Your job contains 1 sequence.
>012034
MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV
MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ
AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS
TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY
PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR
PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA
GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM
DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012034
(472 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1459 1.8e-149 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1061 6.2e-142 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1354 2.4e-138 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 713 6.7e-100 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 632 2.2e-82 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 635 4.5e-82 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 634 5.8e-82 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 634 5.8e-82 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 634 5.8e-82 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 634 5.8e-82 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 634 5.8e-82 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 634 7.4e-82 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 633 7.4e-82 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 633 7.4e-82 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 633 1.5e-81 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 632 1.5e-81 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 632 1.5e-81 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 630 3.2e-81 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 630 3.2e-81 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 630 3.2e-81 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 630 3.2e-81 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 630 3.2e-81 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 630 3.2e-81 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 630 3.2e-81 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 630 3.2e-81 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 626 4.0e-81 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 627 6.5e-81 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 623 4.6e-80 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 619 7.4e-80 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 613 2.5e-79 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 602 3.2e-79 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 602 5.2e-79 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 616 8.4e-79 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 626 1.7e-78 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 614 1.7e-78 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 610 3.6e-78 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 599 3.6e-78 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 607 7.5e-78 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 605 1.2e-77 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 607 4.6e-76 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 601 1.2e-75 2
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 604 2.5e-75 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 470 8.2e-75 3
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 596 8.5e-75 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 598 1.1e-74 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 597 8.6e-73 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 567 3.3e-71 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 615 1.1e-70 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 540 1.6e-67 2
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 547 2.0e-67 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 497 3.3e-67 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 562 6.8e-67 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 484 8.0e-67 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 591 8.7e-67 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 497 1.8e-64 2
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 428 2.9e-60 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 607 3.5e-59 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 604 7.3e-59 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 600 1.9e-58 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 497 1.6e-47 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 497 1.6e-47 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 472 5.3e-47 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 492 5.4e-47 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 311 6.0e-46 2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 468 1.9e-44 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 328 3.6e-44 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 328 3.6e-44 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 462 8.1e-44 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 462 8.1e-44 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 459 1.7e-43 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 449 1.9e-42 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 449 1.9e-42 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 428 3.3e-40 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 354 2.3e-32 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 353 2.9e-32 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 350 6.0e-32 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 327 1.6e-29 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 278 3.3e-24 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 251 4.7e-21 2
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 268 2.7e-20 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 264 7.4e-20 1
UNIPROTKB|H0YB86 - symbol:PABPC1 "Polyadenylate-binding p... 231 7.8e-19 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 229 1.3e-18 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 224 1.9e-17 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 183 1.5e-16 2
UNIPROTKB|H0YBN4 - symbol:PABPC1 "Polyadenylate-binding p... 209 2.1e-16 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 228 2.4e-16 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 226 2.8e-16 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 135 3.2e-16 2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 160 3.6e-16 2
UNIPROTKB|H0Y6X6 - symbol:PABPC4 "Polyadenylate-binding p... 206 4.6e-16 1
SGD|S000000517 - symbol:GBP2 "Poly(A+) RNA-binding protei... 224 5.8e-16 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 138 7.4e-16 2
UNIPROTKB|H0YAS6 - symbol:PABPC1 "Polyadenylate-binding p... 204 7.6e-16 1
UNIPROTKB|H0YB75 - symbol:PABPC1 "Polyadenylate-binding p... 204 7.6e-16 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 202 1.3e-15 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 202 1.3e-15 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 197 1.5e-15 3
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 201 1.6e-15 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 200 2.1e-15 1
WARNING: Descriptions of 1231 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
Identities = 300/479 (62%), Positives = 353/479 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F+ K +R+ K KF NV+VKNL ES +DE+L K+FGE+G TS V+
Sbjct: 196 MLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI 255
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDG+GKSK FGFVNFEN+DDAA+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ
Sbjct: 256 MRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DK QG NLY+KNL +S+ D+KL+E F+ FGTITSCKVMRDPSG+S+GSGFVAFS
Sbjct: 316 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFS 375
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXX 240
TPEEA+RA+ EMNGKMIV+KPLYVA+AQRKE+R+ARLQAQFSQMRPV M
Sbjct: 376 TPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMY 435
Query: 241 XXXXXXLGQQFLYGXXXXXXXXXXXGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXX 300
+GQQ YG GFGYQQQLVPGMRP G+PMPNFF
Sbjct: 436 PPGGPPMGQQLFYGQGPPAMIPQP-GFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQ 494
Query: 301 XXXXXXX------XXXXXTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
QQP P+M QM PRG YRYP R++ P +ML V
Sbjct: 495 QQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQ-RDVNTMPGP--TQNMLSV 551
Query: 355 PVDM--GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
P D+ G G+ RD+ QP+PI AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAK
Sbjct: 552 PYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAK 611
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
VTGMLLEMDQTEVLHLLESPEALKAKV EAM+VLRSVAQQQA ADQLASLSL +N+V
Sbjct: 612 VTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDNIV 670
Score = 355 (130.0 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 80/199 (40%), Positives = 116/199 (58%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L + F +G I S V D G+SK +GFV ++ + A
Sbjct: 129 KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQG 188
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ YVG K +R+ G E V KF N+Y+KNL +S+
Sbjct: 189 AIDKLNGMLLNDKQVYVGPFVHKLQRDPS--G-------EKV-KFT--NVYVKNLSESLS 236
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L ++F EFG TSC +MRD G SKG GFV F ++A+RA+ +NGK K +V
Sbjct: 237 DEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFV 296
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F Q
Sbjct: 297 GKAQKKSERETELKQKFEQ 315
Score = 244 (91.0 bits), Expect = 9.3e-18, P = 9.3e-18
Identities = 68/185 (36%), Positives = 97/185 (52%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L + F + G + S V RD +S +G+VN+ DA++A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R V S R+ L+ K V N++IKNL SID + L
Sbjct: 106 LNFMALNGRAIRV----MYSVRDPSLR-------KSGVG-----NIFIKNLDKSIDHKAL 149
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FG I SCKV DPSG SKG GFV + T E A A+ ++NG ++ K +YV
Sbjct: 150 HETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFV 209
Query: 209 RKEER 213
K +R
Sbjct: 210 HKLQR 214
Score = 122 (48.0 bits), Expect = 0.00033, P = 0.00033
Identities = 30/87 (34%), Positives = 51/87 (58%)
Query: 130 QGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
QG +LY+ +L ++ D +L E F++ G + S +V RD + S G G+V ++TP++ASR
Sbjct: 42 QGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASR 101
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL E+N + + + V + R R
Sbjct: 102 ALNELNFMALNGRAIRVMYSVRDPSLR 128
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1061 (378.5 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 217/362 (59%), Positives = 259/362 (71%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVV
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXX 240
TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVY 426
Query: 241 XXXXXXLGQQFLYGXXXXXXXXXXXGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXX 300
+GQQ YG G+GYQQQLVPGMRP G P+P+FF
Sbjct: 427 PPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG 486
Query: 301 XXXXXXXXXXXXTQQPLPIMPHQMPPRGHAYRYPLGRNMQ-DFP-FDMGAGSMLPVPVDM 358
+QQ P+M QM PRG +RYP GR D P +DMG +P+ +
Sbjct: 487 GGRRPGGIQH--SQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNN----MPLTI 540
Query: 359 GA 360
GA
Sbjct: 541 GA 542
Score = 364 (133.2 bits), Expect = 3.7e-67, Sum P(2) = 3.7e-67
Identities = 78/194 (40%), Positives = 110/194 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLDES + L F +G I S V D G+SK +GFV + N + A KA+E L
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG ++ ER+ T +K + N+Y+KNL +S D+ LK
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDS------------TANKTKFTNVYVKNLAESTTDDDLK 232
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F E+G ITS VM+D G SKG GFV F ++A+RA+ +NG K YV AQ+
Sbjct: 233 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 210 KEERRARLQAQFSQ 223
K ER L+ ++ Q
Sbjct: 293 KSERETELRVRYEQ 306
Score = 348 (127.6 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 84/145 (57%), Positives = 101/145 (69%)
Query: 323 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 382
Q P +P GR M +P G +P P DMG +P + I AL++ L
Sbjct: 499 QQNPMMQQQMHPRGR-MFRYPQGRGGSGDVP-PYDMGNNMP---------LTIGALASNL 547
Query: 383 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 442
+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA
Sbjct: 548 SNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 607
Query: 443 MEVLRSVAQQQANNPADQLASLSLN 467
M+VLRSVA A +QLASL+L+
Sbjct: 608 MDVLRSVA---AGGATEQLASLNLS 629
Score = 271 (100.5 bits), Expect = 3.1e-57, Sum P(2) = 3.1e-57
Identities = 70/194 (36%), Positives = 106/194 (54%)
Query: 23 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 28 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 87
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DAA+A++ LN Y+ K ++ + +V + N++IKNL
Sbjct: 88 QDAARAIQELN---------YIPLYGKP------IRVMYSHR-DPSVRRSGAGNIFIKNL 131
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 200 KPLYVAVAQRKEER 213
K +YV R++ER
Sbjct: 192 KQVYVGPFLRRQER 205
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
Identities = 291/480 (60%), Positives = 339/480 (70%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++NDKQ+FVG FLRK+ERE+ A K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVM
Sbjct: 198 VLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVM 257
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDGDGKS+CFGFVNFEN +DAA+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ
Sbjct: 258 RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG 317
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ +KF GLNLY+KNL D++ DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS
Sbjct: 318 SSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSA 377
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXX 241
EASR L EMNGKM+ KPLYVA+AQRKEERRA+LQAQFSQMRP A
Sbjct: 378 ASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFT 436
Query: 242 XXXXXLGQQFLYGXXXXXXXXXXXGFGYQQQLVPGMRPA--GAPMPNFFXXXXXXXXXXX 299
LGQQ YG GFGYQ QLVPGMRPA G PM
Sbjct: 437 GGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQ-----PGQQGPRP 491
Query: 300 XXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDM 358
QQP+P M QM PRG YRYP G RNM D P G M+PV DM
Sbjct: 492 GGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMP---GGMVPVAYDM 548
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
+P QPM L+T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLL
Sbjct: 549 NV-MP-----YSQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLL 602
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ--------QQANNPADQLASLSLNENL 470
EMDQTEVLHLLESPEAL AKV+EA++VLR+V Q ++ +P+D LASLS+N++L
Sbjct: 603 EMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 662
Score = 371 (135.7 bits), Expect = 1.7e-33, P = 1.7e-33
Identities = 81/205 (39%), Positives = 119/205 (58%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R++ A ++ N+FVKNLD+S ++ L + F GTI S V D G+S+ +GFV F+
Sbjct: 124 RDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDT 183
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
D A A+E LNGK +D++ +VG +K ERE DK + N+Y+KN
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES------------AADKMKFTNVYVKN 231
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ++ D++LK F ++G+I+S VMRD G S+ GFV F PE+A+RA+ +NGK
Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L ++ Q
Sbjct: 292 DKEWYVGKAQKKSERELELSRRYEQ 316
Score = 256 (95.2 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 65/187 (34%), Positives = 97/187 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L F E + S V RD S +G+VN+ N DDA KA++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + S + G NL++KNL S+D++ L
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVG----------------NLFVKNLDKSVDNKTL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS GTI SCKV D G S+G GFV F T + A A+ ++NGK++ K ++V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL 210
Query: 209 RKEERRA 215
RKEER +
Sbjct: 211 RKEERES 217
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 713 (256.0 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 140/227 (61%), Positives = 176/227 (77%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SA
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +F
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR 425
Score = 330 (121.2 bits), Expect = 6.3e-58, Sum P(2) = 6.3e-58
Identities = 75/196 (38%), Positives = 112/196 (57%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER ++ E + N+Y+KNL I +++L+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARD----------ENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F +FG I+S VMRD SG S+ GFV F E A+ A+ +MNG + LYV AQ+
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 307 KSEREEELRRKFEQER 322
Score = 298 (110.0 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 77/187 (41%), Positives = 104/187 (55%)
Query: 266 GFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQ--QPLPIMPHQ 323
G+G+Q Q +PGMRP P NF Q Q +M H+
Sbjct: 464 GYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HR 521
Query: 324 MPPRGHAYRYPL--GRNMQDFPFDMGA-GSMLPVPVDMGAGIPRRDASVGQPMPITALST 380
P G Y GRN D G ++P+P+D + I + A + +PI+ L++
Sbjct: 522 NPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTS 577
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
+LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+
Sbjct: 578 SLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVS 637
Query: 441 EAMEVLR 447
EA++VLR
Sbjct: 638 EALDVLR 644
Score = 250 (93.1 bits), Expect = 5.9e-47, Sum P(2) = 5.9e-47
Identities = 67/193 (34%), Positives = 100/193 (51%)
Query: 22 VAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 80
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N +
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 81 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140
DA +A+EALN DR + + + KG N++IKNL
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNLD 144
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++ K
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Query: 201 PLYVAVAQRKEER 213
++V R++ER
Sbjct: 205 QVFVGHFIRRQER 217
Score = 106 (42.4 bits), Expect = 7.7e-32, Sum P(2) = 7.7e-32
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY +L + + L +LF + S +V RD + S G ++ FS P +A RA+ +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + +P+ + ++ R R
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR 131
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 632 (227.5 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 123/225 (54%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK++FG++G S
Sbjct: 97 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 156
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 157 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 216
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 217 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 275
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 276 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 320
Score = 408 (148.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 90/208 (43%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 24 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 82
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 83 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 132
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 133 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 192
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 193 NGKQIYVGRAQKKVERQTELKRKFEQMK 220
Score = 238 (88.8 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 192 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 250
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 251 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 309
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 310 RQAHLTNQYMQRM 322
Score = 213 (80.0 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 478 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 534
Query: 430 ESPEALKAKVAEAMEVLRS-----VAQQQANNP 457
ESPE+L++KV EA+ VL++ AQ+ NNP
Sbjct: 535 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 567
Score = 195 (73.7 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 129
Score = 46 (21.3 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
A RAL MN +I KP+ + +QR R
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLR 30
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 635 (228.6 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
Identities = 126/225 (56%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 422 (153.6 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 93/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 626
Query: 462 AS 463
A+
Sbjct: 627 AA 628
Score = 199 (75.1 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 634 (228.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 126/225 (56%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 424 (154.3 bits), Expect = 3.4e-59, Sum P(2) = 3.4e-59
Identities = 93/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 TGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 523 PYKYASSIRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 580
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 581 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 640
Query: 462 AS 463
A+
Sbjct: 641 AA 642
Score = 199 (75.1 bits), Expect = 6.9e-30, Sum P(2) = 6.9e-30
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 634 (228.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 126/225 (56%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 422 (153.6 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 93/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 626
Query: 462 AS 463
A+
Sbjct: 627 AA 628
Score = 199 (75.1 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 634 (228.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 126/225 (56%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 418 (152.2 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 92/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 493 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 550
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 551 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 610
Query: 462 AS 463
A+
Sbjct: 611 AA 612
Score = 199 (75.1 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 634 (228.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 126/225 (56%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 418 (152.2 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 92/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 522 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 579
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 580 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 639
Query: 462 AS 463
A+
Sbjct: 640 AA 641
Score = 199 (75.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 634 (228.2 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 126/225 (56%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 201 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 261 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 321 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 379
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 380 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 424
Score = 422 (153.6 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 93/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 128 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 186
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 187 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 236
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 237 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 296
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 297 SGKVIFVGRAQKKVERQAELKRKFEQLK 324
Score = 207 (77.9 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 578 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 635
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 636 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 695
Query: 462 AS 463
A+
Sbjct: 696 AA 697
Score = 185 (70.2 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 198
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 233
Score = 48 (22.0 bits), Expect = 5.1e-14, Sum P(2) = 5.1e-14
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+T A RAL MN +I KP+ + +QR R
Sbjct: 100 ATGGTAERALDTMNFDVIKGKPIRIMWSQRDPSLR 134
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 634 (228.2 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 126/225 (56%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 63 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 122
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 123 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 182
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 183 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 241
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 242 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 286
Score = 413 (150.4 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 90/196 (45%), Positives = 128/196 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A KA+E +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + KE N+YIKN G+ +DDE LK
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIKNFGEEVDDESLK 110
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I K ++V AQ+
Sbjct: 111 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Query: 210 KEERRARLQAQFSQMR 225
K ER+A L+ +F Q++
Sbjct: 171 KVERQAELKRKFEQLK 186
Score = 206 (77.6 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 43/95 (45%), Positives = 71/95 (74%)
Query: 371 QPM-PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
QP+ P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+L
Sbjct: 455 QPLQPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 512
Query: 430 ESPEALKAKVAEAMEVLRSV-AQQQANNPADQLAS 463
ESPE+L++KV EA+ VL++ A+++A +A+
Sbjct: 513 ESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAA 547
Score = 185 (70.2 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 95
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 633 (227.9 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 125/225 (55%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 407 (148.3 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 90/208 (43%), Positives = 132/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 626
Query: 462 AS 463
A+
Sbjct: 627 AA 628
Score = 200 (75.5 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 633 (227.9 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 125/225 (55%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 407 (148.3 bits), Expect = 4.9e-57, Sum P(2) = 4.9e-57
Identities = 90/208 (43%), Positives = 132/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 538 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 595
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 596 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 655
Query: 462 AS 463
A+
Sbjct: 656 AA 657
Score = 200 (75.5 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 114 (45.2 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 633 (227.9 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 125/225 (55%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 149
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 150 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 209
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 210 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 268
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 269 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 313
Score = 407 (148.3 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 90/208 (43%), Positives = 132/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 75
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 76 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 125
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 126 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 185
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 186 SGKSIFVGRAQKKVERQAELKRKFEQLK 213
Score = 204 (76.9 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 45/112 (40%), Positives = 73/112 (65%)
Query: 353 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K
Sbjct: 476 PSPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGK 533
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQLAS 463
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +A+
Sbjct: 534 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAA 585
Score = 186 (70.5 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +M
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKM 87
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 122
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 632 (227.5 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 123/225 (54%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 408 (148.7 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 90/208 (43%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 205 (77.2 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 632 (227.5 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 123/225 (54%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 408 (148.7 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 90/208 (43%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 205 (77.2 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 116 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 175
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 176 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 235
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 236 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 294
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 295 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 339
Score = 405 (147.6 bits), Expect = 2.5e-57, Sum P(2) = 2.5e-57
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 43 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 101
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 102 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 151
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 152 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 211
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 212 NGKQIYVGRAQKKVERQTELKRKFEQMK 239
Score = 238 (88.8 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 211 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 269
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 270 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 328
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 329 RQAHLTNQYMQRM 341
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 496 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 552
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 553 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 581
Score = 195 (73.7 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 148
Score = 113 (44.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 37/105 (35%), Positives = 57/105 (54%)
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKE 124
+S + +VNF+ DA +A++ +N FD + GK + S+R+ L+ K
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN---FDVIK---GKPVRIMWSQRDPSLR-------KS 51
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169
V N++IKNL SID++ L + FS FG I SCKV+ D +G
Sbjct: 52 GVG-----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 91
Score = 70 (29.7 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
S G +V F P +A RAL MN +I KP+ + +QR R
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 49
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 405 (147.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 405 (147.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 405 (147.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 405 (147.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 405 (147.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.5e-34, Sum P(2) = 4.5e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 9.3e-31, Sum P(2) = 9.3e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 552 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 608
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 609 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 637
Score = 113 (44.8 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 405 (147.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 8.8e-31, Sum P(2) = 8.8e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 109 (43.4 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 630 (226.8 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 123/225 (54%), Positives = 168/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 129 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 188
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 189 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 248
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 249 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 307
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 352
Score = 339 (124.4 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 75/166 (45%), Positives = 107/166 (64%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 154
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
KE N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 155 --AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 238 (88.8 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 224 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 282
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 283 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 341
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 342 RQAHLTNQYMQRM 354
Score = 204 (76.9 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 509 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 565
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 566 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 594
Score = 113 (44.8 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 108 (43.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 141 DSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
D I + ++ ++S+ ++ V+ D +G SKG GFV F T E A RA+ +MNG ++
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 133
Query: 200 KPLYVAVAQRKEERRARLQAQFSQMRPV 227
+ ++V + ++ER A L A+ + V
Sbjct: 134 RKVFVGRFKSRKEREAELGARAKEFTNV 161
Score = 71 (30.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LN 90
+N
Sbjct: 72 MN 73
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 626 (225.4 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 126/225 (56%), Positives = 167/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 414 (150.8 bits), Expect = 3.6e-58, Sum P(2) = 3.6e-58
Identities = 92/208 (44%), Positives = 133/208 (63%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELFS++G S KVM DP+G SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRRFEQLK 284
Score = 207 (77.9 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS-VAQQQANNPADQL 461
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKEAAQKVGVV 626
Query: 462 ASLS 465
A+ S
Sbjct: 627 AATS 630
Score = 198 (74.8 bits), Expect = 8.0e-30, Sum P(2) = 8.0e-30
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 627 (225.8 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
Identities = 122/225 (54%), Positives = 169/225 (75%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK+IF +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L +Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQ 384
Score = 400 (145.9 bits), Expect = 4.0e-56, Sum P(2) = 4.0e-56
Identities = 88/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE E+ + KE N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKE+F ++G S +VM D SG SKG GFV+F E+A RA+ EMNGK +
Sbjct: 197 NFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 238 (88.8 bits), Expect = 4.2e-34, Sum P(2) = 4.2e-34
Identities = 58/133 (43%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQV+VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 MNGKQVYVGRAQKKGERQT-ELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTSQYMQRM 386
Score = 204 (76.9 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
Identities = 46/105 (43%), Positives = 72/105 (68%)
Query: 362 IPRRDASV---GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
+P + +V GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 529 VPMQQPAVHVQGQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLL 585
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRS-----VAQQQANNPA 458
E+D +E+LH+LESPE+L++KV EA+ VL++ AQ+ +PA
Sbjct: 586 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVPSPA 630
Score = 204 (76.9 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 65/198 (32%), Positives = 101/198 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 210 KEERRARLQAQFSQMRPV 227
++ER A + A+ + V
Sbjct: 176 RKEREAEMGARAKEFTNV 193
Score = 110 (43.8 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 623 (224.4 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
Identities = 121/225 (53%), Positives = 167/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN + DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 390 (142.3 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 85/208 (40%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD ++DE+LKE+F ++G S KVM D +G SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 229 (85.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 57/133 (42%), Positives = 78/133 (58%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N K +FVG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 MNGKSMFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 LPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 209 (78.6 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 66/198 (33%), Positives = 102/198 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L + T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 210 KEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 176 RKEREAELGARAKEFTNV 193
Score = 200 (75.5 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQA 454
ESPE+L++KV EA+ VL++ ++A
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 111 (44.1 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
Score = 39 (18.8 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKV 413
SPE R+ + E++ L ++AA KV
Sbjct: 597 SPESLRSKVDEAVAVLQAHQAKEAAQKV 624
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 619 (223.0 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 122/225 (54%), Positives = 167/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E D+ LK IF +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKS+ FGFV+FE +DA +AV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM D G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 396 (144.5 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
Identities = 86/208 (41%), Positives = 131/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD+KLK++FS++G S +VM D +G S+G GFV+F E+A RA+ EMNGK +
Sbjct: 197 NFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKLIYVGRAQKKVERQTELKRKFEQMK 284
Score = 234 (87.4 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 57/133 (42%), Positives = 78/133 (58%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N K ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 MNGKLIYVGRAQKKVERQT-ELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM DG G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 211 (79.3 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 66/198 (33%), Positives = 102/198 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L + T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 210 KEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 176 RKEREAELGARAKEFTNV 193
Score = 202 (76.2 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHML 595
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQA 454
ESPE+L++KV EA+ VL++ ++A
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 112 (44.5 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 613 (220.8 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 120/225 (53%), Positives = 166/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK+ FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F+ FG+ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Score = 382 (139.5 bits), Expect = 6.3e-54, Sum P(2) = 6.3e-54
Identities = 83/208 (39%), Positives = 128/208 (61%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE F ++G S KVM D G S+G GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 229 (85.7 bits), Expect = 6.3e-33, Sum P(2) = 6.3e-33
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N K +FVG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKAIFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G+ITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 TPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYMQRM 386
Score = 209 (78.6 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 203 (76.5 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 463
ESPE+L++KV EA+ VL++ QA A ++ S
Sbjct: 596 ESPESLRSKVDEAVAVLQA---HQAKEAAQKVVS 626
Score = 113 (44.8 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 602 (217.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 118/217 (54%), Positives = 161/217 (74%)
Query: 9 FVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
FVG F ++ERE + + K F NV++KN E DE LK++FG++G S VM D G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 179
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 216
Score = 265 (98.3 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 59/126 (46%), Positives = 80/126 (63%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
+VG+ + + ERE EL + KE N+YIKN G+ +DDE+LKELF +FG
Sbjct: 1 FVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPAL 50
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+
Sbjct: 51 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 110
Query: 220 QFSQMR 225
+F QM+
Sbjct: 111 KFEQMK 116
Score = 238 (88.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 88 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 146
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 147 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 205
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 206 RQAHLTNQYMQRM 218
Score = 213 (80.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 374 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 430
Query: 430 ESPEALKAKVAEAMEVLRS-----VAQQQANNP 457
ESPE+L++KV EA+ VL++ AQ+ NNP
Sbjct: 431 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 463
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 602 (217.0 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 118/225 (52%), Positives = 166/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 377 (137.8 bits), Expect = 3.2e-54, Sum P(2) = 3.2e-54
Identities = 86/208 (41%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE
Sbjct: 88 QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG KS RE+EL E K V +F N+YIK
Sbjct: 147 TQEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL----EYGAK--VMEFT--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD++L+E+FS FG S KVM D +G S+G GFV + EEA +A++EMNGK +
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ++ ER+ L+ +F Q++
Sbjct: 257 NGRMIYVGRAQKRIERQGELKRKFEQIK 284
Score = 213 (80.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 52/133 (39%), Positives = 76/133 (57%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N + ++VG ++ ER+ +K KF N++VKNLD+ D+ L+K F
Sbjct: 256 VNGRMIYVGRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
YGTITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q +
Sbjct: 374 RKAILTNQYMQRL 386
Score = 211 (79.3 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA S LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 538 GQE-PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 430 ESPEALKAKVAEAMEVLRS-VAQQQANNPADQ 460
ESPE+L +KV EA+ VL++ A++ + A Q
Sbjct: 595 ESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
Score = 187 (70.9 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRD-IATRRSLGYA-YINFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ F E G+ + S+R+ L+ K V N++IKNL +SID++
Sbjct: 70 DTMNF---EVIKGRPIRIMWSQRDPGLR-------KSGVG-----NVFIKNLDESIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ + ER A+ + V
Sbjct: 174 KSRRERELEYGAKVMEFTNV 193
Score = 37 (18.1 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 368 SVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
S+ + MP S A+ N P T L + + P V
Sbjct: 500 SIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAV 534
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 616 (221.9 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
Identities = 123/225 (54%), Positives = 164/225 (72%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E E LK IF E+G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVNF N DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 CVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLY+KNL DSIDDEKL++ F+ +GTITS KVM D G S+G GFV
Sbjct: 281 EQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQ 384
Score = 370 (135.3 bits), Expect = 8.4e-52, Sum P(2) = 8.4e-52
Identities = 84/208 (40%), Positives = 126/208 (60%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KN+DES ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG + + ERE E+ + A++ T N+YIK
Sbjct: 147 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAK---AVEFT-------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ ID EKLK +F+EFG S VM D G S+G GFV F +A RA+ EMNGK +
Sbjct: 197 NFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ++ ER+ L+ +F Q++
Sbjct: 257 NGRVLYVGRAQKRLERQGELKRKFEQIK 284
Score = 217 (81.4 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 54/133 (40%), Positives = 77/133 (57%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N + ++VG ++ ER+ +K KF N++VKNLD+S DE L+K F
Sbjct: 256 LNGRVLYVGRAQKRLERQG-ELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
YGTITSA VM DG G S+ FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 APYGTITSAKVMTDG-GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q +
Sbjct: 374 RKAILTNQYIQRL 386
Score = 195 (73.7 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
Identities = 54/122 (44%), Positives = 77/122 (63%)
Query: 331 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV---GQPMPITALSTALANAS 386
Y+Y G RN+Q + A P PV + + + +V GQ P+TA + LA A
Sbjct: 501 YKYSAGVRNVQQV---INA----PAPV-VHQVVQNTEPAVHMKGQE-PLTA--SMLAAAP 549
Query: 387 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
++Q+ LLGE LYPL++ L A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ VL
Sbjct: 550 LKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVL 609
Query: 447 RS 448
++
Sbjct: 610 QA 611
Score = 129 (50.5 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 43/141 (30%), Positives = 71/141 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA A++
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + S+R+ L+ K V N++IKN+ +SID++ L
Sbjct: 72 MNYEVIKGRPIRI----MWSQRDPGLR-------KSGVG-----NIFIKNMDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV+ D +G
Sbjct: 116 YDTFSAFGNILSCKVVCDENG 136
Score = 97 (39.2 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNYEVIKGRPIRIMWSQR 89
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 626 (225.4 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 127/289 (43%), Positives = 184/289 (63%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ A+K F NV++KNLD T+++ +FG++G ITS
Sbjct: 231 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 290
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+++D + K + FGFVN+ N + A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++
Sbjct: 291 SLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRY 350
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++K+QG+NL+IKNL D +DDE+LK FS FGTITS K+M D G SKG GFV
Sbjct: 351 EQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVC 410
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXX 238
++TPEEA++A+ EMN +M+ KPLYVA+AQRKE RR++L+AQ +
Sbjct: 411 YTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAG 470
Query: 239 XXXXXXXXLGQQFLYGXXXXXXXXXXXGFGYQQQLVPGMRPAGAPMPNF 287
G +YG G G +VPG PMP +
Sbjct: 471 IPAVQYGATGP-LIYGPGGYPIPAAVNGRG--MPMVPGHN---GPMPMY 513
Score = 316 (116.3 bits), Expect = 3.3e-44, Sum P(2) = 3.3e-44
Identities = 72/208 (34%), Positives = 117/208 (56%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K NVF+KNLD + ++ L F +G I S V D G +K +GFV+F+
Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFD 216
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ + A A+E +NG +D++ YVG + ER+ ++ +A+K N+YIK
Sbjct: 217 SVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV-----EALKANFT-----NVYIK 266
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL I +++ +LF +FG ITS +++D + +G GFV ++ E A +A+ E+N K
Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEY 326
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYV AQ+K ER L+ ++ QM+
Sbjct: 327 KGKKLYVGRAQKKHEREEELRKRYEQMK 354
Score = 235 (87.8 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 63/191 (32%), Positives = 100/191 (52%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N +D KA++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 141 LNYTLIKGRPCRI----MWSQRDPSLR------------KMGTGNVFIKNLDPAIDNKAL 184
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G +KG GFV F + E A+ A+ +NG ++ K +YV
Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHV 244
Query: 209 RKEERRARLQA 219
+ ER+++++A
Sbjct: 245 SRRERQSKVEA 255
Score = 182 (69.1 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 54/142 (38%), Positives = 71/142 (50%)
Query: 316 PLPI---MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 372
P+P+ MP Q P G A YP G N + G M+P V AG +A P
Sbjct: 509 PMPMYPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVP 566
Query: 373 -MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
MP + LA E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE
Sbjct: 567 GMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLED 626
Query: 432 PEALKAKVAEAMEVLRSVAQQQ 453
AL +V EA+ VL+ Q+
Sbjct: 627 DSALNERVNEAIGVLQEFVDQE 648
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 614 (221.2 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 122/225 (54%), Positives = 167/225 (74%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + D+ LK++F +YG S
Sbjct: 162 MLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSV 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV++E +DA KAVE +NG + + + +VG+AQKK ER+ ELK +F
Sbjct: 222 KVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKF 281
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 282 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 340
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 341 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 385
Score = 393 (143.4 bits), Expect = 3.2e-54, Sum P(2) = 3.2e-54
Identities = 85/208 (40%), Positives = 131/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 89 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE E+ + KE N+YIK
Sbjct: 148 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAK----AKEFT------NVYIK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD++LKELF ++G S KVM DP+G S+G GFV++ E+A++A+ EMNG +
Sbjct: 198 NFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTEL 257
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 258 NGKTVFVGRAQKKMERQAELKRKFEQLK 285
Score = 195 (73.7 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 64/200 (32%), Positives = 102/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 70
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 71 DTMNFDVVK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 115
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 116 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 174
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A + A+ + V
Sbjct: 175 KSRKEREAEMGAKAKEFTNV 194
Score = 194 (73.4 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 540 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 596
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
ES E+L++KV EA+ VL++ QA A Q
Sbjct: 597 ESHESLRSKVEEAVAVLQA---HQAKKDATQ 624
Score = 113 (44.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183
T + +LY+ +L I + L E FS G + S +V RD + S G +V F P
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 64
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A RAL MN ++ KP+ + +QR R
Sbjct: 65 DAERALDTMNFDVVKGKPIRIMWSQRDPSLR 95
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 610 (219.8 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 121/225 (53%), Positives = 164/225 (72%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN + D L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFVNFE ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V ++QG+NLY+KNL D IDDE+L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 389 (142.0 bits), Expect = 6.6e-54, Sum P(2) = 6.6e-54
Identities = 87/208 (41%), Positives = 129/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G S+ GFV+FE
Sbjct: 88 QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG + + ERE E + AM+ T N+YIK
Sbjct: 147 TQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGAR---AMEFT-------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD +L+E+FS FG S KVM D +G SKG GFV F EEA +A+A+MNGK I
Sbjct: 197 NFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ++ ER++ L+ +F QM+
Sbjct: 257 NGRMVYVGRAQKRLERQSELKRKFEQMK 284
Score = 222 (83.2 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 55/133 (41%), Positives = 77/133 (57%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
IN + V+VG ++ ER++ +K KF N++VKNLD+ DE L+K F
Sbjct: 256 INGRMVYVGRAQKRLERQS-ELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
YGTITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q +
Sbjct: 374 RKAILTNQYMQRL 386
Score = 195 (73.7 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 53/127 (41%), Positives = 79/127 (62%)
Query: 331 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
Y+Y L RN+Q P MG+ +P P G P GQ P+TA + LA A P++
Sbjct: 509 YKYSLAVRNIQ--P--MGS---VP-PGAQQVGEPAVHIQ-GQE-PLTA--SMLAAAPPQE 556
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++
Sbjct: 557 QKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAH 616
Query: 450 AQQQANN 456
+A++
Sbjct: 617 QATEASH 623
Score = 143 (55.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 45/141 (31%), Positives = 72/141 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + S+R+ L+ K V N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPVRI----MWSQRDPGLR-------KSGVG-----NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV+ D +G
Sbjct: 116 YDTFSAFGNILSCKVVCDENG 136
Score = 112 (44.5 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD S S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPVRIMWSQR 89
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 599 (215.9 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 117/225 (52%), Positives = 165/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ F +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 380 (138.8 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 87/208 (41%), Positives = 131/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE
Sbjct: 88 QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG KS RE+EL E K V +F N+YIK
Sbjct: 147 THEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL----EYGAK--VMEFT--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD++L+E+FS FG S KVM D SG S+G GFV + EEA +A++EMNGK +
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ++ ER++ L+ +F Q++
Sbjct: 257 NGRMIYVGRAQKRIERQSELKRKFEQIK 284
Score = 212 (79.7 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 52/133 (39%), Positives = 77/133 (57%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N + ++VG ++ ER++ +K KF N++VKNLD+ D+ L+K F
Sbjct: 256 VNGRMIYVGRAQKRIERQS-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
YGTITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 LPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q +
Sbjct: 374 RKAILTNQYMQRL 386
Score = 206 (77.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 49/131 (37%), Positives = 77/131 (58%)
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-PITALSTALANASPEQQRTLLG 395
R M + + G ++ P+ A + Q P+TA + LA A P++Q+ +LG
Sbjct: 503 RTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPLTA--SLLAGAPPQEQKQMLG 560
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E +YP++ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA
Sbjct: 561 ERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAK 617
Query: 456 NPADQLASLSL 466
A + A SL
Sbjct: 618 ENAQKSAQPSL 628
Score = 179 (68.1 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 39/95 (41%), Positives = 58/95 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL +SID++ L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ M
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTM 158
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + + ER A+ + V
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNV 193
Score = 137 (53.3 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 43/141 (30%), Positives = 71/141 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + S+R+ L+ K V N++IKNL +SID++ L
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLR-------KSGVG-----NVFIKNLDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV+ D G
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG 136
Score = 105 (42.0 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LYI +L + + L E FS G I S +V RD + S ++ F P +A RAL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 607 (218.7 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 120/225 (53%), Positives = 165/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 384 (140.2 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 88/208 (42%), Positives = 128/208 (61%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG + R+ +VG+ + + ERE EL + KE F N+YIK
Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR----AKE----FP--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 229 (85.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 54/132 (40%), Positives = 79/132 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKT----------KFN--NVFVKNLDESTTDEDLKKIFG 50
+N KQ++VG +K ER+T +T ++ N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFS 315
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER
Sbjct: 316 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 111 EQELKGQFEQAM 122
+ L ++ Q M
Sbjct: 375 QAYLTNEYMQRM 386
Score = 195 (73.7 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 37/83 (44%), Positives = 62/83 (74%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 598
Query: 436 KAKVAEAMEVLRSVAQQQANNPA 458
++KV EA+ VL++ ++A A
Sbjct: 599 RSKVDEAVAVLQAHQAKEATQKA 621
Score = 193 (73.0 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 64/185 (34%), Positives = 89/185 (48%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
KQ+R T + + N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 284 KQDRIT---RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVC 339
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET--VDK----- 128
F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M V
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 129 ---FQGLNLYIKNLGDSIDDEKLKELF-SEFGTITSCK---VMRDPSGISKGSGFVAFST 181
F +N ++ L S T + PS I G+ V FST
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFST 459
Query: 182 PEEAS 186
AS
Sbjct: 460 MRPAS 464
Score = 119 (46.9 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L T+ L + F G I S + RD G S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 88 ALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
+N FD + GK + S+R+ L+ K V N+++KNL SI++
Sbjct: 71 TMN---FDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFVKNLDKSINN 112
Query: 146 EKLKELFSEFGTITSCKVMRDPSG 169
+ L + S FG I SC V+ D +G
Sbjct: 113 KALYDTVSAFGNILSCNVVCDENG 136
Score = 101 (40.6 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD--PSGISKGSGFVAF 179
M + + +LY+ +L + + L E FS G I S ++ RD SG S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNF 59
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
++A AL MN +I KP+ + +QR R
Sbjct: 60 QHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 605 (218.0 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 119/225 (52%), Positives = 166/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ LK+IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 374 (136.7 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 87/208 (41%), Positives = 129/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D G S+ +GFV+FE
Sbjct: 88 QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG KS RE+EL E K V +F N+YIK
Sbjct: 147 TQEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL----EYGAK--VMEFT--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD++LKE+FS FG S KVM D SG S+G GFV + EEA +A+ EMNGK +
Sbjct: 197 NFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ++ ER+ L+ +F Q++
Sbjct: 257 NGRMVYVGRAQKRIERQGELKRKFEQIK 284
Score = 210 (79.0 bits), Expect = 7.4e-30, Sum P(2) = 7.4e-30
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N + V+VG ++ ER+ +K KF N++VKNLD+ D+ L+K F
Sbjct: 256 VNGRMVYVGRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
YGTITS VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q +
Sbjct: 374 RKAILTNQYMQRL 386
Score = 195 (73.7 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A ++Q+ +LGE +YPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 538 GQE-PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 466
ESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 595 ESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628
Score = 188 (71.2 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
++++ +L T+ L + F G I S V RD + G+ + N A A AL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRD-IATRRSLGYA-YINFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ F E G+ + S+R+ L+ K V N++IKNL DSID++
Sbjct: 70 DTMNF---EVIKGRPIRIMWSQRDPGLR-------KSGVG-----NVFIKNLDDSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V
Sbjct: 115 LYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ + ER A+ + V
Sbjct: 174 KSRRERELEYGAKVMEFTNV 193
Score = 113 (44.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 180
M T ++ +LYI +L + + L E FS G I S +V RD + S G ++ F
Sbjct: 1 MNATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P +A RAL MN ++I +P+ + +QR
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQR 89
Score = 42 (19.8 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 23/115 (20%), Positives = 42/115 (36%)
Query: 314 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLPVPVDMGAGIPRRDASVGQP 372
Q P P+M P R H+ + + P + + + + + +AS+ +
Sbjct: 445 QPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRVANIGTQTAGARAQVNASIMRA 504
Query: 373 MPITALSTALANASPEQQRTLLGESLYPLV-EQLERDAAAKVTGMLLEMDQTEVL 426
MP S + N P L + L P V Q + A + +Q ++L
Sbjct: 505 MPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPLTASLLAAAPLQEQKQIL 559
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 607 (218.7 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 118/225 (52%), Positives = 165/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 354 (129.7 bits), Expect = 3.2e-48, Sum P(2) = 3.2e-48
Identities = 81/208 (38%), Positives = 125/208 (60%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE
Sbjct: 88 QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+ +NG +DR+ +VG + + ERE EL + A++ T N+Y+K
Sbjct: 147 THEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR---ALEFT-------NIYVK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +D++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK +
Sbjct: 197 NLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LY AQ++ ER+ L+ +F QM+
Sbjct: 257 SGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 205 (77.2 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 44/93 (47%), Positives = 60/93 (64%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+S D+ L+K F YG ITSA VM +G G SK FGFV F + ++A KAV +
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 354 NGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 178 (67.7 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +L
Sbjct: 527 GQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLML 583
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNP 457
ESPE+L AK+ EA+ VL+ A Q P
Sbjct: 584 ESPESLHAKIDEAVAVLQ--AHQAMEQP 609
Score = 135 (52.6 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
Identities = 44/141 (31%), Positives = 70/141 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + S+R+ L+ K V N++IKNL DSID++ L
Sbjct: 72 MNFEMLKGQPIRI----MWSQRDPGLR-------KSGVG-----NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV D G
Sbjct: 116 YDTFSTFGNILSCKVACDEHG 136
Score = 111 (44.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 601 (216.6 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 120/225 (53%), Positives = 164/225 (72%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL + L+ +F ++G I S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE +DA KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ F+ +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQ 384
Score = 370 (135.3 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
Identities = 84/208 (40%), Positives = 127/208 (61%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE
Sbjct: 88 QRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+ +NG +DR+ +VG + + ERE EL + A++ T N+Y+K
Sbjct: 147 THEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGAR---ALEFT-------NIYVK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +D+ L++LFS+FG I S KVMRD SG S+G GFV F E+A +A+ +MNGK +
Sbjct: 197 NLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ++ ER+ L+ +F QM+
Sbjct: 257 SGRLLYVGRAQKRVERQNELKRRFEQMK 284
Score = 207 (77.9 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
KQ+R T + + N++VKNLD+S DE L+K F YG ITSA VM +G G SK FGFV
Sbjct: 284 KQDRLT---RYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKGFGFVC 339
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 180 (68.4 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G +PR++ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLL
Sbjct: 520 GVRVPRQE-------PLTA--SVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLL 570
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
E+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 571 EIDNSELLLMLESPESLSAKVEEALAVLQA 600
Score = 135 (52.6 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + S+R+ L+ K V N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLR-------KSGVG-----NVFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV+ D G
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG 136
Score = 109 (43.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 604 (217.7 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 120/225 (53%), Positives = 165/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + +TK F NV++KN + D+ L +FG +G + S
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG AQKK +R ELK +F
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A++EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQ 384
Score = 363 (132.8 bits), Expect = 1.0e-48, Sum P(2) = 1.0e-48
Identities = 83/207 (40%), Positives = 123/207 (59%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNL+++ ++ L F +G I S V+ D +G SK GFV+FE
Sbjct: 88 QRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR----TKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD+ L LF FG + S KVM D G SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQM 224
K +YV AQ+K +R L+ +F Q+
Sbjct: 257 NGKHIYVGPAQKKVDRHIELKRKFEQV 283
Score = 219 (82.2 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
Identities = 53/133 (39%), Positives = 76/133 (57%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N K ++VG +K +R + +K KF N++VKNLD+ DE L+K F
Sbjct: 256 LNGKHIYVGPAQKKVDRH-IELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEF 314
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITS VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 315 SPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEE 373
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 374 RQAHLTNQYIQRM 386
Score = 174 (66.3 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 42/93 (45%), Positives = 62/93 (66%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P TA ST L A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E LH+L
Sbjct: 536 GQE-PWTA-ST-LGTA-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHML 591
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
+SPE+L ++ EA+ L++ QAN A + A
Sbjct: 592 DSPESLCSRAQEAVSALQA---HQANEAAQKAA 621
Score = 129 (50.5 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 47/143 (32%), Positives = 73/143 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + VNFE DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ + V N++IKNL +ID++
Sbjct: 72 MN---FDVIK---GKPVRIMWSQRDPSLR-------RSGVG-----NVFIKNLNKTIDNK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSG 169
L + FS FG I SCKV+ D +G
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG 136
Score = 107 (42.7 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
MN +I KP+ + +QR R
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLR 94
Score = 43 (20.2 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 22/92 (23%), Positives = 37/92 (40%)
Query: 329 HAYR-YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP 387
+AY+ P G ++ P P + + R A +P P +S A A+P
Sbjct: 398 NAYQPAPSGYSVAAVPQTQNCAPCCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAP 457
Query: 388 EQQRTLL--GESLYPLVEQLER--DAAAKVTG 415
+ T + S P V +R + +A+ TG
Sbjct: 458 KSSFTTVRPSSSHVPQVMAAQRITNTSAQTTG 489
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 470 (170.5 bits), Expect = 8.2e-75, Sum P(3) = 8.2e-75
Identities = 88/169 (52%), Positives = 128/169 (75%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN++ TD++ + +F +YG +TS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSS 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + +DA+KAV+ LN K+F + YVG+AQKK ERE+EL+
Sbjct: 272 SLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKS 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A +E K+QG+NLYIKNL D +DDEKL++LFSEFG ITS KVMRD
Sbjct: 332 YEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 324 (119.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 72/209 (34%), Positives = 122/209 (58%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 138 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A++A++ +NG ++++ YVG K +R+ + F++ MK N+Y+K
Sbjct: 198 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK----FDE-MKANFT-----NIYVK 247
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 196
N+ + D++ + LF ++G +TS + RD +G S+G GFV F++ E+AS+A+ E+N K
Sbjct: 248 NINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKE 307
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ + R
Sbjct: 308 FHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 244 (91.0 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
Identities = 66/197 (33%), Positives = 109/197 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 226 PKKDR----QSKFDEMK 238
Score = 180 (68.4 bits), Expect = 8.2e-75, Sum P(3) = 8.2e-75
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
AG P G P + A+A+ +P QQ+ +LGE+++P ++ + + A K+TGMLLE
Sbjct: 651 AGAPAGARGAGAPEGLQGQLAAVAD-NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLE 709
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 463
MD TE++ L+E+ AL++KV EA+ V +QQ + Q S
Sbjct: 710 MDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGAQAPS 753
Score = 152 (58.6 bits), Expect = 8.2e-75, Sum P(3) = 8.2e-75
Identities = 31/57 (54%), Positives = 45/57 (78%)
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
G SKG GFV F+ P++A++A+AEMN +M+ +KPLYVA+AQRK+ R+ +L+ Q Q R
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQAR 485
Score = 117 (46.2 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 124
GKSK FGFV F N DDA KAV +N + +++ YV AQ+K R+ +L+ Q QA +
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQARNQ 487
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 596 (214.9 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 118/225 (52%), Positives = 164/225 (72%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F +G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNF+ ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 371 (135.7 bits), Expect = 7.4e-50, Sum P(2) = 7.4e-50
Identities = 83/208 (39%), Positives = 129/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE
Sbjct: 88 QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+ +NG +DR+ +VG + + ERE EL + AM+ T N+Y+K
Sbjct: 147 THEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR---AMEFT-------NIYVK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +D++ L++LFS FG + S KVMRD SG S+G GFV F EEA +A+ +MNGK +
Sbjct: 197 NLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ++ ER++ L+ +F Q++
Sbjct: 257 SGRLLYVGRAQKRVERQSELKRRFEQLK 284
Score = 211 (79.3 bits), Expect = 4.6e-28, Sum P(2) = 4.6e-28
Identities = 52/116 (44%), Positives = 70/116 (60%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
KQ+R T + + N++VKNLD+S DE L+K F YG ITSA VM +G G SK FGFV
Sbjct: 284 KQDRLT---RYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVC 339
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 131
F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q + TV G
Sbjct: 340 FSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRLS-TVRALGG 394
Score = 177 (67.4 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 369 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 428
+GQ P+TA + LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +
Sbjct: 565 LGQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLM 621
Query: 429 LESPEALKAKVAEAMEVLRS 448
LESPE+L AKV EA+ VL++
Sbjct: 622 LESPESLNAKVEEALAVLQA 641
Score = 136 (52.9 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + S+R+ L+ K V N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLR-------KSGVG-----NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV+ D G
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG 136
Score = 109 (43.4 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 598 (215.6 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 118/225 (52%), Positives = 165/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NG++ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 372 (136.0 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
Identities = 83/208 (39%), Positives = 128/208 (61%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE
Sbjct: 88 QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+ +NG +DR+ +VG + + ERE EL + AM+ T N+Y+K
Sbjct: 147 THEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGAR---AMEFT-------NIYVK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +D+++L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ MNG+ +
Sbjct: 197 NLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ++ ER+ L+ +F QM+
Sbjct: 257 SGRLLYVGRAQKRVERQNELKRRFEQMK 284
Score = 209 (78.6 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
KQ+R T + + N++VKNLD+S DE L+K F YG ITSA VM +G G SK FGFV
Sbjct: 284 KQDRLT---RYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVC 339
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 174 (66.3 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +L
Sbjct: 530 GQE-PLTA--SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLML 586
Query: 430 ESPEALKAKVAEAMEVLRS 448
ESPE+L AKV EA+ VL++
Sbjct: 587 ESPESLNAKVEEALAVLQA 605
Score = 136 (52.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 44/141 (31%), Positives = 71/141 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + S+R+ L+ K V N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLR-------KSGVG-----NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV+ D G
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG 136
Score = 109 (43.4 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 597 (215.2 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 116/223 (52%), Positives = 167/223 (74%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +Q+RE A F N++VKNL ++ L+ +F ++G S
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +G+S+ FGF+NFE ++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +F
Sbjct: 221 KVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E +++QG+NLY+KNL DSI+D++LKE+FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382
Score = 351 (128.6 bits), Expect = 1.0e-45, Sum P(2) = 1.0e-45
Identities = 78/201 (38%), Positives = 124/201 (61%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 95 RSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + +RE EL + A+ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRQKREAELGAR---ALGFT-------NIYVKNLRVDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG S KVMRD +G S+G GF+ F EEA +A+ MNGK + + LYV
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRAERQNELKRRFEQMK 284
Score = 209 (78.6 bits), Expect = 8.0e-26, Sum P(2) = 8.0e-26
Identities = 49/122 (40%), Positives = 72/122 (59%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
KQER+ + + N++VKNLD+S D+ LK++F YG ITSA VM + SK FGFV
Sbjct: 284 KQERQN---RYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSKGFGFVC 339
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV-DKFQGLNL 134
F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ + + +V FQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTS 399
Query: 135 YI 136
Y+
Sbjct: 400 YL 401
Score = 206 (77.6 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 60/193 (31%), Positives = 104/193 (53%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L T+ L ++F GTI S V RD +S + ++NF+ DA +A++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+N + + + S R+ L+ M G N++IKNL +SID++
Sbjct: 71 TMNFEMIKGQPIRI----MWSHRDPGLR---RSGM--------G-NIFIKNLENSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG+I S KV+ + G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 115 LYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF 173
Query: 208 QRKEERRARLQAQ 220
+ +++R A L A+
Sbjct: 174 KSRQKREAELGAR 186
Score = 157 (60.3 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 378 LSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 436
L+ ++ +A+P +Q+ ++GE LY L+ K+TGMLLEMD E+L LLESPE+L
Sbjct: 526 LTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLH 585
Query: 437 AKVAEAMEVLRS 448
AK EA+ VL++
Sbjct: 586 AKAEEAVAVLKA 597
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 567 (204.7 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 120/236 (50%), Positives = 162/236 (68%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +ND++VFVG F +++R+ + + K F NV++KNL E DE L+ +F +G S
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKF 280
Query: 119 EQAMKETVDKF-----------QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167
Q MK+ K QG+NLY+KNL D IDDE+L++ FS FGTITS KV +
Sbjct: 281 GQ-MKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME- 338
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 339 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 401 (146.2 bits), Expect = 8.6e-53, Sum P(2) = 8.6e-53
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD S + L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
++A +A+E +NG +DR+ +VG+ + + +R+ EL + KE N+YIK
Sbjct: 147 TQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NLG+ +DDE+L++LFS FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 212 (79.7 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 45/96 (46%), Positives = 61/96 (63%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+ DE L+K F +GTITSA V +G G+SK FGFV F + ++A KAV +
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEM 363
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
NG+ + YV AQ+K ER+ L Q+ Q M T
Sbjct: 364 NGRIVATKPLYVALAQRKEERQAHLSNQYMQRMAST 399
Score = 205 (77.2 bits), Expect = 7.8e-27, Sum P(2) = 7.8e-27
Identities = 66/200 (33%), Positives = 101/200 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTR-RSLGYASV-NFQQLEDAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N+++KNL SID +
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFVKNLDRSIDSKT 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ + +R+A L A+ + V
Sbjct: 174 KSRRDRQAELGARAKEFTNV 193
Score = 172 (65.6 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 380
PH P P R + + + G + P ++ + + ++V + +
Sbjct: 499 PH--PAAASTAAAPAARTVTQYKYTAGVRNP-PQHLNTQPQVTTQRSAVSAQGKESLTVS 555
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
LA+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV
Sbjct: 556 MLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVD 615
Query: 441 EAMEVLRSVAQQQANNPA 458
EA+ VL++ ++ + A
Sbjct: 616 EAIAVLQAHQAKETSQKA 633
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 615 (221.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 123/230 (53%), Positives = 170/230 (73%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F N++VKN+D + ++E +K+F +G ITS
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSI 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVNFE+ + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 263 YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL D+ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 323 EAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR 225
F+TPEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q +QMR
Sbjct: 383 FTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMR 432
Score = 350 (128.3 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 81/208 (38%), Positives = 120/208 (57%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 129 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A+E +NG +DRE +VGK K +RE + FE+ MK N+Y+K
Sbjct: 189 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK----FEE-MKANFT-----NIYVK 238
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + +E ++LFS FG ITS + +D G SKG GFV F E A +A+ E+N K I
Sbjct: 239 NIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEI 298
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER L+ Q+ +R
Sbjct: 299 NGQKIYVGRAQKKRERLEELKKQYEAVR 326
Score = 218 (81.8 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 58/204 (28%), Positives = 100/204 (49%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74
+++ E+ + +++V L+ S + L +IF G ++S V RD KS + +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG----------------NI 142
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
+IKNL +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 195 KMIVSKPLYVAVAQRKEERRARLQ 218
++ + ++V K++R ++ +
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFE 226
Score = 119 (46.9 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 378 LSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+L LL+ E
Sbjct: 541 LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDE 600
Query: 434 ALKAKVAEAMEVLRSVAQQQANNPADQLA 462
+A+ + +A A++ A
Sbjct: 601 LFNNHFEDALTAFEEYKKSEAAGNAEEQA 629
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 540 (195.1 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 114/227 (50%), Positives = 155/227 (68%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F + +R +T +F NV+VKN + E L+K+F ++G ITS
Sbjct: 183 MLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSC 242
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM +GKSK FGFV F N ++A AV+AL+ + D + +V +AQKKSER ELK
Sbjct: 243 EVMTV-EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKK 301
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +++DD+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 302 KHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGF 361
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 362 VCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQ 408
Score = 339 (124.4 bits), Expect = 6.9e-45, Sum P(2) = 6.9e-45
Identities = 81/214 (37%), Positives = 123/214 (57%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+ ++ + F +G I S V D DG SK +GFV+FE
Sbjct: 109 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG ++ +VGK Q +++R +EL G ET +F N+Y+K
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL-G-------ETAKQFT--NVYVK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD + E L++LF++FG ITSC+VM G SKG GFVAF+ PEEA A+ ++ I
Sbjct: 219 NFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTI 277
Query: 198 --VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
L+V AQ+K ER A L+ + Q + M
Sbjct: 278 EGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 217 (81.4 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 47/110 (42%), Positives = 65/110 (59%)
Query: 15 RKQERETVAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 72
+K E+ K+ N++VKNLDE+ D+ LKK F YG ITSA VM D +G+SK FG
Sbjct: 301 KKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFG 360
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
FV FE ++A AV +N K + YV AQ+K +R +L Q+ Q +
Sbjct: 361 FVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 410
Score = 208 (78.3 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 60/189 (31%), Positives = 96/189 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L + L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N F+ GK + + Q + AM+ + G N++IKNL ID++ +
Sbjct: 93 MN---FEALH---GKPMRI------MWSQRDPAMRRSG---AG-NIFIKNLDKVIDNKSI 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A A+ ++NG ++ K ++V Q
Sbjct: 137 YDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ 196
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 197 PRAQRNREL 205
Score = 164 (62.8 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 39/88 (44%), Positives = 60/88 (68%)
Query: 369 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEV 425
+G P+T S LA A+P++Q+ LLGE +Y L+E+L +DA K+TGM+LE+D +E+
Sbjct: 563 IGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAG-KITGMMLEIDNSEL 619
Query: 426 LHLLESPEALKAKVAEAMEVLRSVAQQQ 453
+ +L+ E ++KV EA VL S AQ+Q
Sbjct: 620 IMMLQDSELFRSKVDEAASVLVS-AQKQ 646
Score = 115 (45.5 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 177
+ +T + +LY+ +L +++ L E FS G + S +V RD + +S G +V
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
F P +A RA+ MN + + KP+ + +QR R
Sbjct: 79 NFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMR 115
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 547 (197.6 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 116/227 (51%), Positives = 155/227 (68%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML++DK+V+VG F + +R E K+ NVFVKN E E L +F ++G ITSA
Sbjct: 208 MLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSA 267
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VVM D GK K FGFV F + D A +AVE LN + D + V +AQKKSER ELK
Sbjct: 268 VVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKR 327
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++E +E V ++QG+NLY+KN+ + ++D+ L++ FS FGTITS KVM D +G SKG GF
Sbjct: 328 KYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGF 387
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
V F PEEA+ A+ +MN KMI +KPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 388 VCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 434
Score = 343 (125.8 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 77/210 (36%), Positives = 121/210 (57%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A + N+F+KNLD ++ + F +G I S V D +G SK +GFV+FE
Sbjct: 134 QRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 193
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A A+E +NG D++ YVGK Q +++R +EL G E +K T N+++K
Sbjct: 194 TEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKEL-G--ESGLKYT-------NVFVK 243
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D EKL +FS+FG ITS VM D G KG GFVAF+ + A +A+ ++N ++
Sbjct: 244 NFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 303
Query: 198 VSKPLYVAV--AQRKEERRARLQAQFSQMR 225
++V AQ+K ER A L+ ++ ++
Sbjct: 304 EGTDCKLSVCRAQKKSERSAELKRKYEALK 333
Score = 199 (75.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 40/93 (43%), Positives = 58/93 (62%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKN++E D+ L+ F +GTITSA VM D +G+SK FGFV FE ++A AV +
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDM 403
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
N K + YV AQ+K +R +L Q+ Q +
Sbjct: 404 NSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 436
Score = 199 (75.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 55/189 (29%), Positives = 91/189 (48%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
++++ +L ++ L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL ID++ +
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRAGNG----------------NIFIKNLDRVIDNKSV 161
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T A A+ ++NG ++ K +YV Q
Sbjct: 162 YDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQ 221
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 222 PRAQRMKEL 230
Score = 156 (60.0 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 433
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ E
Sbjct: 603 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAE 662
Query: 434 ALKAKVAEAMEVLRSVAQQQANNPA 458
++KV EA VL + A+ A
Sbjct: 663 LFRSKVEEAFGVLTNAQSAAASTSA 687
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 497 (180.0 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 108/234 (46%), Positives = 151/234 (64%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPL----YVAVAQRKEERRARLQ--AQFSQMRP 226
FS + + A N + +P Y A + + RA +Q +Q+RP
Sbjct: 340 FSYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 393
Score = 405 (147.6 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
Identities = 89/208 (42%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 210 (79.0 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 90 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 208 QRKEERRARLQAQFSQMRPV 227
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 501 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 557
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 558 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 586
Score = 113 (44.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 562 (202.9 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 119/224 (53%), Positives = 154/224 (68%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IN ++VFVG F +ER + KF NVF KNL E + LK++ +YG IT+ +
Sbjct: 161 MMINGQKVFVGPFKSSKERGQPT-EVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITI 219
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGF NFE+A+ A VE NGK F + Y G+AQKK ERE ELK FE
Sbjct: 220 MADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFET 279
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAF 179
K+QG+NLYIKN+ DSID++KL+E+FS+FGTITS VM+D SKG GFV +
Sbjct: 280 -------KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+ P+EA+RA+ EMNG+MI +KPLYVA+AQRK+ RRA+L+ Q Q
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQ 376
Score = 308 (113.5 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 73/204 (35%), Positives = 107/204 (52%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+ + L F +G I S V+ D SK FGFV++E
Sbjct: 87 QRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+ +NG + ++ +VG + ER GQ T KF N++ K
Sbjct: 147 TQESADKAIAKVNGMMINGQKVFVGPFKSSKER-----GQ------PTEVKFT--NVFFK 193
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + + ++LKEL ++G IT+ +M D G SKG GF F + E A + NGK+
Sbjct: 194 NLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIF 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
KP+Y AQ+K ER A L+ F
Sbjct: 254 HGKPIYAGRAQKKIEREAELKHTF 277
Score = 230 (86.0 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 63/199 (31%), Positives = 107/199 (53%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
++++V +L +++ L +IF + G +++ V RD + + S + +VN+ N DA +A++
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 88 ALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
LN GKA + S+R+ L+ K V N++IKNL ID
Sbjct: 70 TLNNTPIR------GKACRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKGIDH 111
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV+ D SKG GFV + T E A +A+A++NG MI + ++V
Sbjct: 112 KALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG 171
Query: 206 VAQRKEERRARLQAQFSQM 224
+ +ER + +F+ +
Sbjct: 172 PFKSSKERGQPTEVKFTNV 190
Score = 217 (81.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 46/128 (35%), Positives = 77/128 (60%)
Query: 2 LINDKQVFVGHFLRKQERETV---AIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTIT 56
+ + K ++ G +K ERE +TK+ N+++KN+D+S ++ L+++F ++GTIT
Sbjct: 252 IFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTIT 311
Query: 57 SAVVMRDGDGK-SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 115
SA+VM+D SK FGFV + D+A +AV +NG+ + YV AQ+K R +L+
Sbjct: 312 SAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLE 371
Query: 116 GQFEQAMK 123
Q +Q K
Sbjct: 372 MQHQQKFK 379
Score = 136 (52.9 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 41/126 (32%), Positives = 63/126 (50%)
Query: 326 PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST-ALAN 384
PR + R G+ Q+ P +G+ P+PV + +AL+ ++ N
Sbjct: 440 PRQNGPRQNGGQPRQNGPRPDVSGAQ-PIPVQQQTTLDVAQTQQAASSAESALNLQSIIN 498
Query: 385 A-SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEALKAKVAEA 442
S +QQ LGE LYPL+ + D A K+TGMLL+ + E+ L + + L K+ EA
Sbjct: 499 LPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREA 558
Query: 443 MEVLRS 448
+EVL S
Sbjct: 559 LEVLGS 564
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 484 (175.4 bits), Expect = 8.0e-67, Sum P(2) = 8.0e-67
Identities = 97/217 (44%), Positives = 142/217 (65%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D DE+ +K+F ++G ITSA
Sbjct: 193 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 253 TLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E K+QG+NLY+KNL D +DD+KL+ELF +GTITS KVMRD + +
Sbjct: 313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVET------ 366
Query: 179 FSTPEEASRALAEM-NGKMIVSKPLYVAVAQRKEERR 214
+TPE ++ A N K + A + KEE++
Sbjct: 367 -ATPESETKESANKENEKAAEGEKEPAAEEKEKEEKK 402
Score = 361 (132.1 bits), Expect = 7.3e-53, Sum P(2) = 7.3e-53
Identities = 82/208 (39%), Positives = 121/208 (58%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++ +NG +D++ +VG K +R+ + FE+ MK N+YIK
Sbjct: 179 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK----FEE-MKANFT-----NIYIK 228
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ ++DE+ ++LF +FG ITS + RD G S+G GFV FST E A A+ EMN K +
Sbjct: 229 NIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
S+ LYV AQ+K ER L+ Q+ R
Sbjct: 289 RSQKLYVGRAQKKHEREEELRKQYEAAR 316
Score = 224 (83.9 bits), Expect = 6.9e-34, Sum P(2) = 6.9e-34
Identities = 57/190 (30%), Positives = 103/190 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ + +A++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 103 LNYTLIKGKPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDSAIDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G+SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 147 HDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 206
Query: 209 RKEERRARLQ 218
K++R+++ +
Sbjct: 207 SKKDRQSKFE 216
Score = 220 (82.5 bits), Expect = 8.0e-67, Sum P(2) = 8.0e-67
Identities = 51/116 (43%), Positives = 72/116 (62%)
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLV 402
G G + P+ M G R +VGQP P T + AL+ A P+QQ+ +LGE+LYP +
Sbjct: 600 GRGGV-PLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKI 658
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
+ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA
Sbjct: 659 QATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
Score = 173 (66.0 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 407 KPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 111 (44.1 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183
T + +LY+ L S+ + L ELFS G + S +V RD + S G +V ++
Sbjct: 35 TTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTA 94
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQR 209
RAL E+N +I KP + +QR
Sbjct: 95 HGERALDELNYTLIKGKPCRIMWSQR 120
Score = 108 (43.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
Score = 47 (21.6 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 16/50 (32%), Positives = 17/50 (34%)
Query: 328 GHAYRYPL---GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
G AY P G Q F G M P M G+P R P P
Sbjct: 484 GQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPFP 533
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 591 (213.1 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 116/230 (50%), Positives = 167/230 (72%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
Score = 312 (114.9 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 74/208 (35%), Positives = 112/208 (53%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE
Sbjct: 115 QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFE 174
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A +A++ALNG + +E YV + ER+ +L+ ET K NLY+K
Sbjct: 175 EEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE--------ET--KAHYTNLYVK 224
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ DE+ +ELF++FG I S + +D G KG GFV + E+A +A+ +N +
Sbjct: 225 NINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 285 NGEKLYVGRAQKKNERMHVLKKQYEAYR 312
Score = 215 (80.7 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 61/200 (30%), Positives = 103/200 (51%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + S+R+ L+ K G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRI----MWSQRDPSLR-----------KKGSG-NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 106 (42.4 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
Score = 100 (40.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 106 KKSEREQELKGQFEQAMKETVDKFQGL-----NLYIKNLGDSIDDEKLKELFSEFGTITS 160
K +E+ + L Q +Q T + Q + +LY+ +L S+ + L ++FS G+++S
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 66
Query: 161 CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
+V RD + S G +V F+ E +A+ ++N I + + +QR R +
Sbjct: 67 IRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKK 123
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 497 (180.0 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 97/220 (44%), Positives = 152/220 (69%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ DK+++VG F++K +R V + K+ N+++KNLD +++ L++ F E+G I S +
Sbjct: 176 IVADKEIYVGKFMKKTDR--VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA 233
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+D + + + FVNF+N +DA +A E +NG KF + YVG+AQKK+EREQ L+ QF++
Sbjct: 234 KDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEK 293
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+E + N+Y+KN+ ++ +E+L++ FS+ GTITS K+M D G SKG GFV FST
Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
PEEA A+ +G+M KPLYVA+AQ+KE+R+ +LQ QF
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
Score = 336 (123.3 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 80/194 (41%), Positives = 112/194 (57%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE D A A++ L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+E YVGK KK++R +K + +K+ NLY+KNL + ++ L+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR---VKPE---------EKYT--NLYMKNLDADVSEDLLR 218
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E F+EFG I S + +D + + +G FV F PE+A RA +NG SK LYV AQ+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 210 KEERRARLQAQFSQ 223
K ER L+ QF +
Sbjct: 279 KAEREQLLREQFKE 292
Score = 205 (77.2 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 52/185 (28%), Positives = 92/185 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L S T+ L F E+ ++TS + +D G+S C+G+ NF + DA A+E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + + + + G N+++KNL +S+ + L
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG----------------NVFVKNLPESVTNAVL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV G S+G GFV F + A A+ +N ++ K +YV
Sbjct: 129 QDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM 188
Query: 209 RKEER 213
+K +R
Sbjct: 189 KKTDR 193
Score = 178 (67.7 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 53/133 (39%), Positives = 68/133 (51%)
Query: 318 PIMPHQMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 375
P M P + R L RN + P + MLP+ D R G+ M
Sbjct: 453 PPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKK 512
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
+ E Q LLGE L+PLVE+LE A K+TGMLLEMD++E+L LL+SPE L
Sbjct: 513 SIQQRQSETVGMEMQ--LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDL 570
Query: 436 KAKVAEAMEVLRS 448
+V EA EVL+S
Sbjct: 571 AVRVDEAFEVLKS 583
Score = 92 (37.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ + L + F+EF ++TS ++ +D S G S G+ F + ++A+ A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
N ++ K + V + R + R
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 428 (155.7 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 84/140 (60%), Positives = 111/140 (79%)
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
DDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 204 VAVAQRKEERRARLQAQFSQ 223
VA+AQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 218 (81.8 bits), Expect = 6.1e-33, Sum P(2) = 6.1e-33
Identities = 52/131 (39%), Positives = 77/131 (58%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
++ K +FVG +K ER+ +K KF N+++KNLD++ DE L+K F
Sbjct: 11 MSGKSIFVGRAQKKVERQA-ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 69
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 70 SPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 128
Query: 110 REQELKGQFEQ 120
R+ L Q+ Q
Sbjct: 129 RKAHLTNQYMQ 139
Score = 207 (77.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 293 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 350
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 461
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 351 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 410
Query: 462 AS 463
A+
Sbjct: 411 AA 412
Score = 89 (36.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 39
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 122/225 (54%), Positives = 165/225 (73%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG S
Sbjct: 33 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSV 89
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 90 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 149
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 150 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 208
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 209 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 253
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 74/166 (44%), Positives = 105/166 (63%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 58
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
KE N+YIKN G+ +DDE+LK+LF G S KVM D SG SKG GFV+F
Sbjct: 59 --AKEFT------NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSF 107
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 108 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 153
Score = 238 (88.8 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 125 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 183
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 184 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 242
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 243 RQAHLTNQYMQRM 255
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 119/226 (52%), Positives = 168/226 (74%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
LI ++ + V F+ + + + + F NV+VKNL E+ TD DLK++FGE+G ITSAVVM
Sbjct: 95 LIRNQHIHVCPFVSRGQWDKSRV---FTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-Q 120
+DG+GKS+ FGFVNFE A+ A A+E +NG D++E +VG+AQ+K+ R ++LK +FE +
Sbjct: 152 KDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELE 211
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ + +G+NLY+KNL DS+D+ KL+ELFSEFGTITSCKVM +GISKG GFV FS
Sbjct: 212 KIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFS 271
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 226
T EEAS+A+ +MNGKM+ +KP+YV++AQ KE+ + LQ QF+ P
Sbjct: 272 TSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPP 317
Score = 273 (101.2 bits), Expect = 4.6e-22, P = 4.6e-22
Identities = 73/192 (38%), Positives = 101/192 (52%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNLDES ++ L +F +G + S V RD G SK +GFV F + A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ +V + GQ++++ T N+Y+KNL ++ D LK
Sbjct: 92 NGTLIRNQHIHVCPFVSR--------GQWDKSRVFT-------NVYVKNLVETATDADLK 136
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
LF EFG ITS VM+D G S+ GFV F E A A+ +MNG ++ K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 210 KEERRARLQAQF 221
K R L+A+F
Sbjct: 197 KTNRTEDLKAKF 208
Score = 163 (62.4 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 37/96 (38%), Positives = 61/96 (63%)
Query: 113 ELKGQFEQAM---KETVDKFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
+LKG+ + M ++ ++ G N+++KNL +SID+++L ++FS FG + SCKV RD S
Sbjct: 8 KLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS 67
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G+SKG GFV F + A NG +I ++ ++V
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 118/217 (54%), Positives = 160/217 (73%)
Query: 9 FVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
FVG F ++ERE + + K F NV++KN E DE LK +FG++G S VM D G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 180
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 217
Score = 262 (97.3 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
+VG+ + + ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG
Sbjct: 2 FVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPAL 51
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+
Sbjct: 52 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 111
Query: 220 QFSQMR 225
+F QM+
Sbjct: 112 KFEQMK 117
Score = 238 (88.8 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 57/133 (42%), Positives = 79/133 (59%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 89 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 147
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 148 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 206
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 207 RQAHLTNQYMQRM 219
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 102/211 (48%), Positives = 145/211 (68%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F NV++KN DE LK +F +YG S
Sbjct: 219 LLKGCKVFVGRFKNRKDREA-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 277
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 278 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 337
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 338 EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLIC 396
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 397 FSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 84/208 (40%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 145 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + A + T N+YIK
Sbjct: 204 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK---ASEFT-------NVYIK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 314 NGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 206 (77.6 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 66/213 (30%), Positives = 109/213 (51%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
K + VA K + +++V +L T++ L + F G + S + RD + + G+
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR-RSLGYA- 112
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NL 134
+ N A A +AL+ FD + GK+ ++ + Q ++ + G+ N+
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNV 158
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
+IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNG
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNG 217
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
K++ ++V + +++R A L+++ S+ V
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAELRSKASEFTNV 250
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 102/211 (48%), Positives = 145/211 (68%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F NV++KN DE LK +F +YG S
Sbjct: 161 LLKGCKVFVGRFKNRKDREA-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 339 FSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 84/208 (40%), Positives = 130/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + A + T N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK---ASEFT-------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 202 (76.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 65/207 (31%), Positives = 107/207 (51%)
Query: 22 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81
VA K + +++V +L T++ L + F G + S + RD + + G+ + N
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR-RSLGYA-YVNFLQ 60
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLG 140
A A +AL+ FD + GK+ ++ + Q ++ + G+ N++IKNL
Sbjct: 61 LADAQKALDTMNFDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNVFIKNLD 106
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK++
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGC 165
Query: 201 PLYVAVAQRKEERRARLQAQFSQMRPV 227
++V + +++R A L+++ S+ V
Sbjct: 166 KVFVGRFKNRKDREAELRSKASEFTNV 192
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 472 (171.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 100/225 (44%), Positives = 147/225 (65%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ K++FV F+ K ER +A NV+VKNL E+ TD+ L +F +YGT++S VVM
Sbjct: 175 MVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVM 234
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDG G+S+ FGFVNF N ++A KA+E+L G + ++ +VGKA KK ER + LK +F
Sbjct: 235 RDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDN 294
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ + NLY+KNL +S+++ +L+E+F +G I S KVM +G SKG GFV FS
Sbjct: 295 FIAKPN-MRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSN 353
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 226
EE+ +A +NG ++ KP+ V VA+RKE+R RLQ Q+ Q +P
Sbjct: 354 CEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQ-QYFQAQP 397
Score = 327 (120.2 bits), Expect = 6.7e-31, Sum P(2) = 6.7e-31
Identities = 78/198 (39%), Positives = 115/198 (58%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
+T F N++VKNLD S T L+++F +G+I S V+ + +G+SK FGFV F+ A
Sbjct: 108 RTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVS 166
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A AL+G ++ +V K K ER AM D N+Y+KNL +++
Sbjct: 167 ARSALHGSMVYGKKLFVAKFINKDERA---------AMAGNQDS---TNVYVKNLIETVT 214
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+ L LFS++GT++S VMRD G S+G GFV F PE A +A+ + G + SK L+V
Sbjct: 215 DDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Query: 205 AVAQRKEERRARLQAQFS 222
A +K+ERR L+ +FS
Sbjct: 275 GKALKKDERREMLKQKFS 292
Score = 236 (88.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 64/191 (33%), Positives = 103/191 (53%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAK 84
++F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ LN D + GKA + +++L + + T F NLY+KNL SI
Sbjct: 78 AMTRLN---HSDLK---GKAMRIMWSQRDLAYR-----RRTRTGFA--NLYVKNLDSSIT 124
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
L+ +F FG+I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 205 AVAQRKEERRA 215
A K+ER A
Sbjct: 184 AKFINKDERAA 194
Score = 37 (18.1 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 209 RKEERRARLQAQFS 222
RKEERR L + S
Sbjct: 511 RKEERRLTLSGKLS 524
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 99/188 (52%), Positives = 134/188 (71%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEAS 186
FS+PEEA+
Sbjct: 340 FSSPEEAT 347
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 88/208 (42%), Positives = 128/208 (61%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG + R+ +VG+ + + ERE EL + KE F N+YIK
Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR----AKE----FP--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 119 (46.9 bits), Expect = 0.00026, P = 0.00026
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L T+ L + F G I S + RD G S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 88 ALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
+N FD + GK + S+R+ L+ K V N+++KNL SI++
Sbjct: 71 TMN---FDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFVKNLDKSINN 112
Query: 146 EKLKELFSEFGTITSCKVMRDPSG 169
+ L + S FG I SC V+ D +G
Sbjct: 113 KALYDTVSAFGNILSCNVVCDENG 136
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 311 (114.5 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 64/117 (54%), Positives = 87/117 (74%)
Query: 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 164
QKK E + ELK +FEQ ++ + ++QG+NLY+KNL DSID E+L++ FS FGTITS KVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSID-ERLRKQFSPFGTITSAKVM 59
Query: 165 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
+ G SK GF+ FS+ EEA +A+ EMNGK++ +KPLYVA+AQ KEE + L Q+
Sbjct: 60 ME-GGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 188 (71.2 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 39/93 (41%), Positives = 65/93 (69%)
Query: 362 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 421
+P+ + G +TA + LA+A P++Q+ +LGE L+PL++ L A K+TGMLLE+D
Sbjct: 234 VPQYKYAAGGQEHLTA--SMLASAPPQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEID 291
Query: 422 QTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+E+LH+L SPE+L +KV EA+ +L++ ++A
Sbjct: 292 NSELLHMLASPESLHSKVDEAVALLQAHQVKEA 324
Score = 188 (71.2 bits), Expect = 7.2e-28, Sum P(2) = 7.2e-28
Identities = 44/93 (47%), Positives = 58/93 (62%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+S DE L+K F +GTITSA VM +G G SK FGF+ F + ++A KAV +
Sbjct: 29 NLYVKNLDDSI-DERLRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSSHEEAFKAVMEM 86
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
NGK + YV AQ K E + L Q+ M
Sbjct: 87 NGKIVATKPLYVALAQHKEECQTHLTNQYMHRM 119
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 95/210 (45%), Positives = 138/210 (65%)
Query: 2 LINDKQVFVGHFLRKQERETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ D +FV F +++RE + +F NV++KN + DE L+ +F +YG S
Sbjct: 161 LLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVK 220
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM+D GKSK FGFV+F++ A AVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 221 VMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFE 280
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q KE + Q LYIKNL D+IDDE L++ FS FG+I KVM++ +G SKG G + F
Sbjct: 281 QMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICF 339
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+PE A++A+AEMNG+++ SKPL +A+ Q+
Sbjct: 340 FSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 82/208 (39%), Positives = 129/208 (62%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D +G SK +GFV+++
Sbjct: 87 QRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NGK D +V + + + +RE EL+ E+ + T N+YIK
Sbjct: 146 DQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR---EKPAEFT-------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE L+ +FS++G S KVM+D SG SK GFV+F + + A A+ +MNG+ I
Sbjct: 196 NFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F QM+
Sbjct: 256 NGQTIFVGRAQKKVERQAELKEMFEQMK 283
Score = 151 (58.2 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 52/153 (33%), Positives = 81/153 (52%)
Query: 22 VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 78
++++TK+ +++V +L E T++ L + F G + S + RD +S +G+VNF
Sbjct: 1 MSVETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQ 60
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYI 136
DA KA+E +N FD GK+ + S+R+ L+ K + N++I
Sbjct: 61 VGDAQKALETMN---FD---LIKGKSIRLMWSQRDACLR-------KSGIG-----NVFI 102
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169
KNL SID++ L E FS FG I S KVM D G
Sbjct: 103 KNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG 135
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 328 (120.5 bits), Expect = 3.6e-44, Sum P(2) = 3.6e-44
Identities = 72/153 (47%), Positives = 97/153 (63%)
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
+ NA A K A + YVG Q ++ R LK +F+ E +K QG+NL
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL D IDD L+ELF FGTITS KVMRD SKG GFV F++ EEA++A+ EM+
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
K+I KPLYV +A+++E+R +RLQ +F +M P+
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPI 544
Score = 258 (95.9 bits), Expect = 5.4e-33, Sum P(2) = 5.4e-33
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +
Sbjct: 100 KSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKE 159
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + + YVG KKSER A +T KF NLY+KN DS+
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKNFPDSVT 205
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLY 203
+ L++LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I +
Sbjct: 206 ETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKITDDGQID 263
Query: 204 VAVAQRKEERRARLQAQFSQ 223
+KEE A +Q
Sbjct: 264 ETYDPKKEEATASTSGAANQ 283
Score = 217 (81.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 61/185 (32%), Positives = 98/185 (52%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN Y K + + + + +++++ G N+++KNL SID++ L
Sbjct: 77 LN---------YTNI---KGQPARLMWSHRDPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 209 RKEER 213
+K ER
Sbjct: 181 KKSER 185
Score = 204 (76.9 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 48/127 (37%), Positives = 69/127 (54%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ K V+VG F++K ER T TKF N++VKN +S T+ L+++F YG ITS +V
Sbjct: 169 LGSKNVYVGPFIKKSERATN--DTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKM 226
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQA 121
D K++ F F+N+ +A+ A A++ LNGKK DD + KK E G Q
Sbjct: 227 DN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQT 284
Query: 122 MKETVDK 128
DK
Sbjct: 285 TGTDADK 291
Score = 180 (68.4 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 38/89 (42%), Positives = 59/89 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD+ D L+++F +GTITSA VMRD +SK FGFV F + ++A KAV +
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 175 (66.7 bits), Expect = 3.6e-44, Sum P(2) = 3.6e-44
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 320 MPHQMPPRGHAYRYPLGRNMQDFP------FDMGAGSMLPVPVDMGAGIP--RRDASVGQ 371
M HQ P+G + + MQ P F A + + +P + + +V
Sbjct: 737 MNHQAQPQGAQAQQKNPQQMQQVPQGNNFKFTAQARNRMELPNKNANKVNTMNNNMNVNF 796
Query: 372 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
T + ALA+A P Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+
Sbjct: 797 NNNSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLEN 856
Query: 432 PEALKAKVAEAMEVLR 447
E LK K+ EA+ VL+
Sbjct: 857 EEQLKKKIDEALVVLQ 872
Score = 89 (36.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ +L + + + L E+F+ G ++S +V RD + S G +V + +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I +P + + R R
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLR 99
Score = 37 (18.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKF 28
+IN K ++VG K+E+ ++ +F
Sbjct: 514 IINGKPLYVG-LAEKREQRLSRLQQRF 539
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 328 (120.5 bits), Expect = 3.6e-44, Sum P(2) = 3.6e-44
Identities = 72/153 (47%), Positives = 97/153 (63%)
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
+ NA A K A + YVG Q ++ R LK +F+ E +K QG+NL
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL D IDD L+ELF FGTITS KVMRD SKG GFV F++ EEA++A+ EM+
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
K+I KPLYV +A+++E+R +RLQ +F +M P+
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPI 544
Score = 258 (95.9 bits), Expect = 5.4e-33, Sum P(2) = 5.4e-33
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +
Sbjct: 100 KSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKE 159
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + + YVG KKSER A +T KF NLY+KN DS+
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKNFPDSVT 205
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLY 203
+ L++LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I +
Sbjct: 206 ETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKITDDGQID 263
Query: 204 VAVAQRKEERRARLQAQFSQ 223
+KEE A +Q
Sbjct: 264 ETYDPKKEEATASTSGAANQ 283
Score = 217 (81.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
Identities = 61/185 (32%), Positives = 98/185 (52%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN Y K + + + + +++++ G N+++KNL SID++ L
Sbjct: 77 LN---------YTNI---KGQPARLMWSHRDPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 209 RKEER 213
+K ER
Sbjct: 181 KKSER 185
Score = 204 (76.9 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 48/127 (37%), Positives = 69/127 (54%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ K V+VG F++K ER T TKF N++VKN +S T+ L+++F YG ITS +V
Sbjct: 169 LGSKNVYVGPFIKKSERATN--DTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKM 226
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQA 121
D K++ F F+N+ +A+ A A++ LNGKK DD + KK E G Q
Sbjct: 227 DN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQT 284
Query: 122 MKETVDK 128
DK
Sbjct: 285 TGTDADK 291
Score = 180 (68.4 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 38/89 (42%), Positives = 59/89 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD+ D L+++F +GTITSA VMRD +SK FGFV F + ++A KAV +
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 175 (66.7 bits), Expect = 3.6e-44, Sum P(2) = 3.6e-44
Identities = 48/136 (35%), Positives = 71/136 (52%)
Query: 320 MPHQMPPRGHAYRYPLGRNMQDFP------FDMGAGSMLPVPVDMGAGIP--RRDASVGQ 371
M HQ P+G + + MQ P F A + + +P + + +V
Sbjct: 737 MNHQAQPQGAQAQQKNPQQMQQVPQGNNFKFTAQARNRMELPNKNANKVNTMNNNMNVNF 796
Query: 372 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
T + ALA+A P Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+
Sbjct: 797 NNNSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLEN 856
Query: 432 PEALKAKVAEAMEVLR 447
E LK K+ EA+ VL+
Sbjct: 857 EEQLKKKIDEALVVLQ 872
Score = 89 (36.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ +L + + + L E+F+ G ++S +V RD + S G +V + +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I +P + + R R
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLR 99
Score = 37 (18.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKF 28
+IN K ++VG K+E+ ++ +F
Sbjct: 514 IINGKPLYVG-LAEKREQRLSRLQQRF 539
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 100/212 (47%), Positives = 141/212 (66%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
FS+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 83/201 (41%), Positives = 126/201 (62%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+ +F ++R
Sbjct: 272 GRAQKKIERLAELRRRFERLR 292
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEAL 89
++V +LD T++ L K F G + + RD +S +G+VNF DA A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N FD GK + + + ++ K V N++IKNL SID+ L
Sbjct: 80 N---FD---LINGKPFRLMWSQPD-----DRLRKSGVG-----NIFIKNLDKSIDNRALF 123
Query: 150 ELFSEFGTITSCKVMRDPSG 169
LFS FG I SCKV+ D +G
Sbjct: 124 YLFSAFGNILSCKVVCDDNG 143
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 100/212 (47%), Positives = 141/212 (66%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 6 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 64
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 65 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 124
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 125 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVC 183
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
FS+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 184 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 279 (103.3 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 61/137 (44%), Positives = 88/137 (64%)
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD IDDEKL
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDIDDEKL 51
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
KELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 209 RKEERRARLQAQFSQMR 225
+K ER A L+ +F ++R
Sbjct: 112 KKIERLAELRRRFERLR 128
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 100/211 (47%), Positives = 138/211 (65%)
Query: 3 INDKQVFVGHFLRKQERET-VAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
+N++QV+VG F +ER V + K F NVFVKN + D+ LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVK 229
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +FE
Sbjct: 230 VIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFE 289
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G + F
Sbjct: 290 RLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICF 348
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
S+ EEA++A+ EMNG+++ SKPL V + Q +
Sbjct: 349 SSFEEATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 83/201 (41%), Positives = 127/201 (63%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G+I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T DK N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDKATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+KLKELFSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+ +F ++R
Sbjct: 272 GRAQKKIERLAELRRRFERLR 292
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 45/140 (32%), Positives = 69/140 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEAL 89
++V +LD T++ L K F G + + RD +S +G+VNF DA A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N FD GK + + + ++ K + N++IKNL SID+ L
Sbjct: 80 N---FD---LINGKPFRLMWSQPD-----DRLRKSGIG-----NIFIKNLDKSIDNRALF 123
Query: 150 ELFSEFGTITSCKVMRDPSG 169
LFS FG+I SCKV+ D +G
Sbjct: 124 YLFSAFGSILSCKVVCDDNG 143
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 100/212 (47%), Positives = 138/212 (65%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LKK+F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + VG+AQKK ER EL+ +F
Sbjct: 229 KVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
FS+ EEAS+A+ EMNG+++ SK L+V + Q +
Sbjct: 348 FSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 81/201 (40%), Positives = 125/201 (62%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLK+LFSE+G S KV+RD +G SKG GFV + T E A +A+ E++GK I K L V
Sbjct: 212 DEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCV 271
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+ +F +++
Sbjct: 272 GRAQKKIERLAELRRRFERLK 292
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/155 (32%), Positives = 72/155 (46%)
Query: 18 ERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFV 74
E T K K+ ++V +LD T++ L K F G + + RD +S +G+V
Sbjct: 5 EPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 64
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
NF DA A+ +N FD GK + + + + K V N+
Sbjct: 65 NFRFPADAEWALNTMN---FD---LINGKPFRLMWSQPD-----DHLRKSGVG-----NI 108
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169
+IKNL SID+ L LFS FG I SCKV+ D +G
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG 143
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 99/212 (46%), Positives = 137/212 (64%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN DE LK+IF YG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK + + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
FS+ E+A++A+ EMNG+ + SKPL+V + Q +
Sbjct: 348 FSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 80/201 (39%), Positives = 125/201 (62%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN G+ +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGNDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS +G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+ +F ++R
Sbjct: 272 GRAQKKIERLAELRRRFERLR 292
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEAL 89
++V +LD T++ L K F G + + RD +S +G+VNF DA A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N FD GK + + + ++ K V N++IKNL SID+ L
Sbjct: 80 N---FD---LINGKPFRLMWSQPD-----DRLRKSGVG-----NIFIKNLDKSIDNRALF 123
Query: 150 ELFSEFGTITSCKVMRDPSG 169
LFS FG I SCKV+ D +G
Sbjct: 124 YLFSAFGNILSCKVVCDDNG 143
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 82/167 (49%), Positives = 117/167 (70%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 165
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS K R
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 81/208 (38%), Positives = 125/208 (60%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE
Sbjct: 88 QRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+ +NG +DR+ +VG + + ERE EL + A++ T N+Y+K
Sbjct: 147 THEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR---ALEFT-------NIYVK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +D++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK +
Sbjct: 197 NLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LY AQ++ ER+ L+ +F QM+
Sbjct: 257 SGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 135 (52.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 44/141 (31%), Positives = 70/141 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + S+R+ L+ K V N++IKNL DSID++ L
Sbjct: 72 MNFEMLKGQPIRI----MWSQRDPGLR-------KSGVG-----NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSG 169
+ FS FG I SCKV D G
Sbjct: 116 YDTFSTFGNILSCKVACDEHG 136
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 77/167 (46%), Positives = 111/167 (66%)
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 42 IVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK- 99
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV+
Sbjct: 100 ---AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 63/122 (51%), Positives = 86/122 (70%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 74 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 133
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 134 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 193
Query: 119 EQ 120
EQ
Sbjct: 194 EQ 195
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 67/121 (55%), Positives = 91/121 (75%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101
DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 102 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161
G+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 162 K 162
K
Sbjct: 122 K 122
Score = 207 (77.9 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 42/81 (51%), Positives = 56/81 (69%)
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 62 GRAQKKVERQTELKRKFEQMK 82
Score = 113 (44.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 54 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 112
Query: 50 GEYGTITSA 58
+GTITSA
Sbjct: 113 SPFGTITSA 121
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 172
ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SK
Sbjct: 2 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 60
Query: 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
G GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 61 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 206 (77.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD++ DE L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 81 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 76/178 (42%), Positives = 110/178 (61%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG + R+ +VG+ + + ERE EL + KE F N+YIK
Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR----AKE----FP--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 228 (85.3 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 47/95 (49%), Positives = 64/95 (67%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
VM D GKSK FGFV+FE +DA KAV+ +NGK+
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Score = 176 (67.0 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+++KNL SI+++ L + S FG I SC V+ D +G SKG GFV F T E A RA+ +M
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQ 220
NG ++ + ++V + ++ER A L A+
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR 186
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L T+ L + F G I S + RD G S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 88 ALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
+N FD + GK + S+R+ L+ K V N+++KNL SI++
Sbjct: 71 TMN---FDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFVKNLDKSINN 112
Query: 146 EKLKELFSEFGTITSCKVMRDPSG 169
+ L + S FG I SC V+ D +G
Sbjct: 113 KALYDTVSAFGNILSCNVVCDENG 136
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 278 (102.9 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 64/196 (32%), Positives = 111/196 (56%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 210 KEERRARLQAQFSQMR 225
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 238 (88.8 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 50/125 (40%), Positives = 81/125 (64%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 235 MLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 294
Query: 120 QAMKE 124
+ ++
Sbjct: 295 ERKRQ 299
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 251 (93.4 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 70/217 (32%), Positives = 111/217 (51%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK-IFGEYGTITSAVV 60
LI K + V F+ K ER V N VF +N DES T E L++ + +G I S ++
Sbjct: 337 LILGKPINVERFVSKVERYKVE-----NKVFFRNADESITIEILQQELSNRFGEIESCIL 391
Query: 61 MRDGDGKSKCFGFVNFENADDAAKA--------VEALNGKKFDDREWYVGKAQKKSEREQ 112
D +GKSK G V F+N +DA K + ++G + K
Sbjct: 392 KNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITID 451
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 172
+K + E+ E K L+L+I N+ +SID + +KE F++ GTI K+++D + +K
Sbjct: 452 RIKSKVER-FTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNK 510
Query: 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
G GF++FS +EA +AL +NG SK + V+ + +
Sbjct: 511 GFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNK 547
Score = 180 (68.4 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 59/181 (32%), Positives = 84/181 (46%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ KT N+FVKNL++ + L F +G I S V + G SK +G+V+FE
Sbjct: 264 RDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFET 322
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-ELKGQFEQAMKE-TVDKFQGLNLYI 136
D A KA+E +NG + V + K ER + E K F A + T++ Q
Sbjct: 323 NDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENKVFFRNADESITIEILQ------ 376
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
+EL + FG I SC + D +G SKG G V F E+A + L E +
Sbjct: 377 ------------QELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALI 424
Query: 197 I 197
I
Sbjct: 425 I 425
Score = 168 (64.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+++KNL +D+ L + FS FG I SCKV + GISKG G+V F T + A +A+ ++
Sbjct: 275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKV 333
Query: 193 NGKMIVSKPLYVAVAQRKEER 213
NG +I+ KP+ V K ER
Sbjct: 334 NGTLILGKPINVERFVSKVER 354
Score = 161 (61.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 40/127 (31%), Positives = 69/127 (54%)
Query: 3 INDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDL-KKIFGEYGTITSAVV 60
IN K + + K ER T KT ++F+ N+DES D DL K+ F ++GTI +
Sbjct: 443 INGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESI-DRDLIKEEFAKHGTIIGIKI 501
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFE 119
++D + ++K FGF++F +A KA+++LNG F ++ V + K + + +L G
Sbjct: 502 VQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGNST 561
Query: 120 QAMKETV 126
+ K +
Sbjct: 562 KITKNII 568
Score = 107 (42.7 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 39/140 (27%), Positives = 65/140 (46%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENADDAA 83
+ +++V +L + L ++F + G I S V RD + +S + +VNF N DA
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
+A++ LN GK + + + K + G N+++KNL +
Sbjct: 242 RALDTLNYTLVH------GKPCR-------IMWSYRDPTKRKTNV--G-NIFVKNLEKGV 285
Query: 144 DDEKLKELFSEFGTITSCKV 163
D+ L + FS FG I SCKV
Sbjct: 286 DNAMLYDTFSSFGNILSCKV 305
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEASRAL 189
+LY+ +L +++ L ELFS+ G I S V RD + + S G +V F +A RAL
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERR 214
+N ++ KP + + R +R
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKR 269
Score = 68 (29.0 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 374 PITALSTA-LANASPEQQRTLLGESLYPLVEQLER---DAAAKVTGMLLEM--DQTEVLH 427
P T ++ + NA+ E+ LG +Y LV + AAK+ GM+++ + E+
Sbjct: 731 PKTTITLEFITNATAEEATETLGSEVYNLVLAKYNNNIELAAKIAGMIVDAVPEHKELFE 790
Query: 428 LLESPEALKAKVAEAMEVLRSVAQQ 452
++ + + +++K+ EA +L Q+
Sbjct: 791 IISNGQ-IQSKIEEAKSLLDQPDQE 814
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 268 (99.4 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 68/192 (35%), Positives = 104/192 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVK+L DEDL+ +F +YG + S+ VM D G S +GFV F + ++A A+E L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G ++ +++ L + K+ NL+IK L + D++L+
Sbjct: 170 DGYQYQNKK---------------LLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK---PLYVAV 206
+LF FG I CKVM D +G SK +GFV FS+ +AS+A+ MNG I PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 207 AQRKEERRARLQ 218
A ++++ +R Q
Sbjct: 275 ADTEQQKISRKQ 286
Score = 156 (60.0 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
NN+F+K L TD+ L+K+F +G I VM D +G+SK GFV F + DA+KA++A
Sbjct: 197 NNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDA 256
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
+NG + + Y K ++ EQ+ K +Q +T+
Sbjct: 257 MNGVRINKDSGYP-LVVKYADTEQQ-KISRKQRKMQTI 292
Score = 140 (54.3 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL++ +L +DD L +LFS+FG + S +V+ D +G +KG GFV F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 192 MNGKMIVSKPLYVAVAQRKE 211
MNG I SK L V + KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 264 (98.0 bits), Expect = 7.4e-20, P = 7.4e-20
Identities = 66/200 (33%), Positives = 102/200 (51%)
Query: 25 KTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 83
K K N + ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A
Sbjct: 119 KKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAE 178
Query: 84 KAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN------ 133
KA A+N K DR +W + + E + E+ + +KF+G+
Sbjct: 179 KARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKS 236
Query: 134 -LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
L I+NL +++ LK++FSEFGT+ K+ P G +G FV F EA +AL M
Sbjct: 237 RLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAM 296
Query: 193 NGKMIVSKPLYV--AVAQRK 210
NGK I + + V A+A+ K
Sbjct: 297 NGKKIKDRQVAVDWAIAKDK 316
Score = 162 (62.1 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 43/136 (31%), Positives = 71/136 (52%)
Query: 24 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 83
IK K + + ++NL ++DLK+IF E+GT+ A + DGK + F FV F+ +A
Sbjct: 232 IKLK-SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAG 290
Query: 84 KAVEALNGKKFDDRE----WYVGK-----AQKKSE----REQELKGQFEQAMKETVDKFQ 130
KA+ A+NGKK DR+ W + K Q S +E+ + G+ E+A + K +
Sbjct: 291 KALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKK 350
Query: 131 GLNLYIKNLGDSIDDE 146
++ + D DD+
Sbjct: 351 SISKKSDSSEDEDDDD 366
Score = 134 (52.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 28/85 (32%), Positives = 52/85 (61%)
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL E
Sbjct: 4 VTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKE 63
Query: 192 MNGKMIVSKPLYVAVAQRKEERRAR 216
+ K+ + ++V VA++K + + R
Sbjct: 64 V--KLYDDQKIFVTVAKKKLDDKKR 86
Score = 133 (51.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV+ L E+ ++E L +IF E G + + V+ D + K + FG+V F DDA +A++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 91 GKKFDDREWYVGKAQKKSEREQELK 115
K +DD++ +V A+KK + ++ K
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDKKRKK 88
Score = 108 (43.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
D +G ++I+NL ++E L+E+ +FG ++ +V+ +P +G+SKG F F + E A
Sbjct: 434 DVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAA 493
Query: 186 SRALA 190
+ +A
Sbjct: 494 EKCIA 498
Score = 72 (30.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 34/107 (31%), Positives = 45/107 (42%)
Query: 107 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL-FSEFG----TITSC 161
K R +ELK + + V K + L + NL S+D KL L S G I C
Sbjct: 569 KRTRFEELKRARLKDINVYVSKTR---LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIEC 625
Query: 162 KVMRDPS-------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
++M D G S G GFV F E A +AL +N + P
Sbjct: 626 RIMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGP 672
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 231 (86.4 bits), Expect = 7.8e-19, P = 7.8e-19
Identities = 48/75 (64%), Positives = 60/75 (80%)
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
KE FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 3 KE-FSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 209 RKEERRARLQAQFSQ 223
RKEER+A L Q+ Q
Sbjct: 61 RKEERQAHLTNQYMQ 75
Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 46 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 106 KKSEREQELKGQFEQAM 122
+K ER+ L Q+ Q M
Sbjct: 61 RKEERQAHLTNQYMQRM 77
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 229 (85.7 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 61/202 (30%), Positives = 98/202 (48%)
Query: 9 FVGHFLRKQERETVAIKTKFN---NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG- 64
F+ + + + E + A+ V++ N+ + T+E L K+ E+G + VM D
Sbjct: 53 FIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKY 112
Query: 65 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 124
G+S+ FGF ++ +DA VE LNG + RE V +K +L +
Sbjct: 113 SGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLS-VLQSEDSA 171
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTP 182
VD +Y+ NL ++ E L+ LFSE G + S KV R P G SK G GFV FS+
Sbjct: 172 FVDS--PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVP-GTSKSTGFGFVTFSSE 228
Query: 183 EEASRALAEMNGKMIVSKPLYV 204
E+ A+ +N ++ + + V
Sbjct: 229 EDVEAAIVALNNSLLEGQKIRV 250
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR-DGDGKSKCFGFVN 75
Q ++ + + + V+V NL ++ T E L+ +F E G + SA V R G KS FGFV
Sbjct: 166 QSEDSAFVDSPYK-VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVT 224
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKA 104
F + +D A+ ALN + ++ V KA
Sbjct: 225 FSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 224 (83.9 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 59/198 (29%), Positives = 103/198 (52%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 74
+ +E + +K K +FV NL S + D+ ++FG+ GT+ + ++R DGK++ F FV
Sbjct: 84 KTEETQNSNLKRK---LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN 133
+ ++A A++ + + R V A++ K + A +T K
Sbjct: 141 TMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHK----- 195
Query: 134 LYIKNLGDSIDDEKLKELFS--EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
LY+ NL L+ELF+ +F +++ V DP G S G GFV+F+T EEA A+ +
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 192 MNGKMIVSKPLYVAVAQR 209
+NGK I+ +P+ + + R
Sbjct: 256 LNGKEIMGRPITLKFSLR 273
Score = 113 (44.8 bits), Expect = 0.00096, P = 0.00096
Identities = 28/106 (26%), Positives = 55/106 (51%)
Query: 108 SEREQELKGQFEQAMKETVDKFQGLNL----YIKNLGDSIDDEKLKELFSEFGTITSCKV 163
S E+E E + +E ++ Q NL ++ NL S+ + ELF + GT+ + ++
Sbjct: 67 SVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI 126
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+R G ++G FV ++ EEA A+ + + + + + V+ A+R
Sbjct: 127 IRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 86
+F+KNL+ TT+E LK++F + GT+ S + + G S FGFV + + A KA+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ L G D + V +++ ++ L + + K+T K + ++N+
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK-----ILVRNIPFQAHSR 846
Query: 147 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 188
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 847 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 163 (62.4 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSGI--SKGS 174
E+ +E + G L+IKNL +EKLKE+FS+ GT+ SC + + + +G+ S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 175 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
GFV + PE+A +AL ++ G ++ L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Score = 131 (51.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 43/195 (22%), Positives = 94/195 (48%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 85
T + V ++ + T++++ + + +V R+ G + FV+F N ++ +A
Sbjct: 291 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIV-RNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 86 V----EALNGKK---FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ E + G+ F ++ K K+ + +G+ +E D + L+++N
Sbjct: 350 LKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKS-WQGRILGENEEEEDLAESGRLFVRN 408
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI 197
L + +E L++LFS++G ++ D + KG F+ F PE A +A +E++G++
Sbjct: 409 LPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVF 468
Query: 198 VSKPLYVAVAQRKEE 212
+ L+V + K+E
Sbjct: 469 QGRMLHVLPSTIKKE 483
Score = 124 (48.7 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 37/129 (28%), Positives = 62/129 (48%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
N + + G L + E E ++ +FV+NL ++T+EDL+K+F +YG ++ D
Sbjct: 379 NTTKSWQGRILGENEEEEDLAES--GRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPID 436
Query: 64 G-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE---LKGQFE 119
K K F F+ F + A KA ++G+ F R +V + K E ++ L
Sbjct: 437 SLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSY 496
Query: 120 QAMKETVDK 128
+ KE DK
Sbjct: 497 KKKKEAQDK 505
Score = 112 (44.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A KA +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 89 LNGKKFDD 96
N K F D
Sbjct: 62 FN-KSFID 68
Score = 60 (26.2 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ VKNL T L++ FG +G++ V++ +G G + V F +A KA L
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSL-GRVLLPEG-GIT---AIVEFLEPLEARKAFRHLA 643
Query: 91 GKKFDD----REWY-VGKAQKKSEREQELKGQFEQAMKE 124
KF EW VG + ++++L+ + M++
Sbjct: 644 YSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEK 682
Score = 59 (25.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
+ +KNL +L+E F FG++ +V+ GI+ V F P EA +A +
Sbjct: 589 ILVKNLPAGTLAAQLQETFGHFGSLG--RVLLPEGGIT---AIVEFLEPLEARKAFRHLA 643
Query: 194 GKMIVSKPLYV 204
PLY+
Sbjct: 644 YSKFHHVPLYL 654
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 106 KKSEREQELKGQFEQAMKETVDKFQ 130
KK E+++++ GQ E+ ++T +FQ
Sbjct: 112 KKDEKKKKVAGQLEKLKEDT--EFQ 134
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 209 (78.6 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 52 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 111
+ I V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE
Sbjct: 69 FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 127
Query: 112 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169
EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D SG
Sbjct: 128 AELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 149 (57.5 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S
Sbjct: 108 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 167
Query: 59 VVMRDGDG 66
VM D G
Sbjct: 168 KVMTDESG 175
Score = 115 (45.5 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+ N D E+ + + F I V+ D +G SKG GFV F T E A RA+ +MNG
Sbjct: 51 YV-NFQQPADAERALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 107
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
++ + ++V + ++ER A L A+ + V
Sbjct: 108 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 140
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 228 (85.3 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 56/171 (32%), Positives = 90/171 (52%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAK 84
+K +VFV +L + ++E LK F ++G ++ A V+RD KSK +GFV+F N +A
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NGK R A +K+ E K FEQ T K ++Y+ N+
Sbjct: 282 AIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNST--KADNTSVYVGNISQQTT 339
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
D L++LFS +G I ++ + ++ FV + E A++A+ EMNGK
Sbjct: 340 DADLRDLFSTYGDIAEVRIFK-----TQRYAFVRYEKKECATKAIMEMNGK 385
Score = 154 (59.3 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 177
E M+ +D + ++++ +L + +E LK F++FG ++ KV+RD + SKG GFV
Sbjct: 212 EPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFV 271
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 224
+F + A A+A MNGK I + + A RK R + F Q+
Sbjct: 272 SFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQV 318
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 226 (84.6 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 53/181 (29%), Positives = 100/181 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NLD + T++ + +F + G++T V+ DG + FV F + A++A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
+ DRE V A + +++ ++ +T F ++++ +L +D++KL+E
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKI---------DTTRHF---HVFVGDLSSEVDNQKLRE 153
Query: 151 LFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F FG ++ KV+RD + SKG GFV++ EEA RA+ +MNG+ + + + A R
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 213
Query: 210 K 210
K
Sbjct: 214 K 214
Score = 202 (76.2 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 50/197 (25%), Positives = 106/197 (53%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L+ D+++ V + ++++ T+ +VFV +L ++ L++ F +G ++ A V+
Sbjct: 108 LLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVI 167
Query: 62 RDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
RD + KSK +GFV++ ++A +A+E +NG+ R A +K +++ E+
Sbjct: 168 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEK 227
Query: 121 AMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ E ++ G N +Y+ N+ +DE +++ F+ FG IT ++ + +G FV
Sbjct: 228 SYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIFK-----MQGYAFVK 281
Query: 179 FSTPEEASRALAEMNGK 195
F + A++A+ +MN +
Sbjct: 282 FDNKDAAAKAIVQMNNQ 298
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 135 (52.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 120 (47.3 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGK 195
+NG+
Sbjct: 186 LNGQ 189
Score = 111 (44.1 bits), Expect = 0.00039, P = 0.00039
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGK 92
LNG+
Sbjct: 186 LNGQ 189
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 54/202 (26%), Positives = 102/202 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 89
+FV + +S +E++K +F I S ++++ + + FV+ + ++A +A+E L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 90 NGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+ K + + Q K ++ EQE + A K L++ L S ++E++
Sbjct: 65 HNSK--KFQGVLNNLQVKYADSEQE-----KLASK----------LFVGMLPRSYEEEQI 107
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVS-KPLYVAV 206
+ELF G + ++R P+ SKG GF+ F E A A+A +NG K+ S PL V
Sbjct: 108 RELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKF 167
Query: 207 A-----QRKEERRARLQAQFSQ 223
A ++K++++ ++Q Q Q
Sbjct: 168 ADTEKDKKKKQKQQQIQIQMQQ 189
Score = 152 (58.6 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRA 188
QG NL++ N+ + D L LF ++G + S KV D + G+SKG GFV++ P A+ A
Sbjct: 401 QGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLA 460
Query: 189 LAEMNGKMIVSKPLYVAVAQ 208
++ ++G+M+ K L V++ Q
Sbjct: 461 ISNLHGQMMAGKKLKVSLKQ 480
Score = 124 (48.7 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 28/103 (27%), Positives = 55/103 (53%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV L S +E ++++F +G + ++R + +SK GF+ F+N + A A+
Sbjct: 91 SKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIAT 150
Query: 89 LNGKKFDD--REWYVG-----KAQKKSEREQELKGQFEQAMKE 124
LNG K D V K +KK +++Q+++ Q +Q ++
Sbjct: 151 LNGMKLDGSPNPLVVKFADTEKDKKKKQKQQQIQIQMQQRQQQ 193
Score = 120 (47.3 bits), Expect = 0.00036, P = 0.00036
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
+N+FV N+ +D DL +F +YG + SA V D + G SK FGFV+++N A A+
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQ 112
L+G+ ++ V Q + Q
Sbjct: 463 NLHGQMMAGKKLKVSLKQTSGQGSQ 487
>UNIPROTKB|H0Y6X6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
ProteinModelPortal:H0Y6X6 PRIDE:H0Y6X6 Ensembl:ENST00000437136
Bgee:H0Y6X6 Uniprot:H0Y6X6
Length = 195
Score = 206 (77.6 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 43/106 (40%), Positives = 68/106 (64%)
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 77 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 134
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 135 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 180
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 224 (83.9 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 60/191 (31%), Positives = 95/191 (49%)
Query: 15 RKQERETVAIKTKF-NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
R ER+ A K F N++FV+NL T EDLK++FG G + A ++ G + G
Sbjct: 107 RDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGT 165
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
V F + A+ +G F DR+ V + E +E ++A +E +D G
Sbjct: 166 VEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFS---KKATREEIDN--GFE 220
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
++I NL S++ + LK++F E G + V D +G S+G G V + T +E RA+ N
Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFN 280
Query: 194 GKMIVSKPLYV 204
G + + L V
Sbjct: 281 GMEVEGRVLEV 291
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 118 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 175
+E M E D NL + L ++ E+L+ LFS G I S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYG 64
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 137 (53.3 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEAS A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAI 302
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 131 (51.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+L+ +F G I SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++A+ A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 111 (44.1 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
Score = 93 (37.8 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 89 LNGKK 93
NG K
Sbjct: 167 FNGHK 171
>UNIPROTKB|H0YAS6 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000520868
Uniprot:H0YAS6
Length = 169
Score = 204 (76.9 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 74 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 130
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 131 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 159
>UNIPROTKB|H0YB75 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR002004
Pfam:PF00658 PROSITE:PS51309 SMART:SM00517 GO:GO:0005737
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000522658 Bgee:H0YB75
Uniprot:H0YB75
Length = 183
Score = 204 (76.9 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 88 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 144
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNPA 458
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 145 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 173
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 202 (76.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 209 RKEERRA 215
+ER A
Sbjct: 166 SHKEREA 172
Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 37/113 (32%), Positives = 61/113 (53%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL ++ ++ L IF +G I S V D G K +GFV+F+
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQ 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 130
+ A +A++A+NG + R+ +VG+ + ERE E Q+ V F+
Sbjct: 138 KQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFE 190
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 202 (76.2 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 209 RKEERRA 215
+ER A
Sbjct: 166 SHKEREA 172
Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 37/113 (32%), Positives = 61/113 (53%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL ++ ++ L IF +G I S V D G K +GFV+F+
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQ 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 130
+ A +A++A+NG + R+ +VG+ + ERE E Q+ V F+
Sbjct: 138 KQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFE 190
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 197 (74.4 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 59 (25.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 24/64 (37%), Positives = 28/64 (43%)
Query: 314 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA---SVG 370
Q P P P +PPRG + P+G M P G +P P GAG PR G
Sbjct: 327 QMPPP--PMGVPPRG-PFGPPMGPPMH--PGMRGPPPPMPPP-GYGAGPPRPPPFGFQRG 380
Query: 371 QPMP 374
PMP
Sbjct: 381 PPMP 384
Score = 41 (19.5 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 325 PPRGHAYRYPLGRN---MQDFPFD-MGAGSMLPVPVDM-GAGIPRRDASVGQPMP 374
PP GH P G + M P G M+P P G+ PR P P
Sbjct: 277 PPPGHPPFPPAGMHPPGMPHMPMPPTGPPGMVPPPPGPPGSNQPRAPPPPQMPPP 331
Score = 39 (18.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 274 VPGMRPAGA--PMP 285
+PGM P GA P+P
Sbjct: 234 IPGMPPPGAFPPVP 247
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 201 (75.8 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 209 RKEERRA 215
+ER A
Sbjct: 166 SHKEREA 172
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL ++ ++ L IF +G I S V D G K +GFV+F+
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQ 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 130
+ A +A++ +NG + R+ +VG+ + ERE E Q+ V F+
Sbjct: 138 KQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFE 190
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 200 (75.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 209 RKEERRA 215
+ER A
Sbjct: 166 SHKEREA 172
Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 37/113 (32%), Positives = 61/113 (53%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL ++ ++ L IF +G I S V D G K +GFV+F+
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQ 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 130
+ A +A++A+NG + R+ +VG+ + ERE E Q+ V F+
Sbjct: 138 KQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFE 190
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 118 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 175
+E M E D NL + L ++ E+L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FV + T ++A RA++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 134 (52.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
Score = 94 (38.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 89 LNGKK 93
NG K
Sbjct: 167 FNGHK 171
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 118 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 175
+E M E D NL + L ++ E+L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FV + T ++A RA++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 134 (52.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 112 (44.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
Score = 94 (38.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 89 LNGKK 93
NG K
Sbjct: 167 FNGHK 171
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 207 (77.9 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 55/186 (29%), Positives = 93/186 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGT--ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+FV NL + L +F + GT I+ + RD D +S+ FGFV ++A KAVE
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTD-QSRGFGFVTMSTVEEAEKAVEK 173
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + R V +A + R + ++ A + +Y+ NL +D +L
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR----------IYVGNLPWDVDSGRL 223
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ LFSE G + +V+ D +G S+G GFV S E + A+A ++G+ + + + V VA
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Query: 208 QRKEER 213
+ + R
Sbjct: 284 EERTRR 289
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 28/96 (29%), Positives = 51/96 (53%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFV 74
+ ER+ F ++V NL L+++F E+G + A V+ D + G+S+ FGFV
Sbjct: 195 RPERQPRVYDAAFR-IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFV 253
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
N ++ A+ AL+G+ + R V A++++ R
Sbjct: 254 QMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 198 (74.8 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 60/187 (32%), Positives = 94/187 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 MNFDVINGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+FS FG I SCKV D G KG GFV F E A RA+ +NG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 165
Query: 209 RKEERRA 215
+ER A
Sbjct: 166 SHKEREA 172
Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 44/129 (34%), Positives = 69/129 (53%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL ++ ++ L IF +G I S V D G K +GFV+F+
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQ 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ALNG + R+ +VG+ + ERE E +G + A + T F K
Sbjct: 138 KQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-RGAW--ARQSTSADF-------K 187
Query: 138 NLGDSIDDE 146
+ D DDE
Sbjct: 188 DFDDDSDDE 196
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 218 (81.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 60/210 (28%), Positives = 105/210 (50%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG 66
+F H + QE + + +++ NLD +E L ++F + G + + + RD +G
Sbjct: 1 MFTQH--KNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKING 58
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
+GFV +E + A LN K GKA + ++ Q+ K +
Sbjct: 59 YHAGYGFVEYEYEYECEYAANILNMTKL------FGKALRCNKATQD---------KRSF 103
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
D G NL+I NL D +D++ L ++FS FG I + KVMR+ SKG GF+++ E +
Sbjct: 104 DV--GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSD 161
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
A+ MN + I +K ++++ A +K+ + R
Sbjct: 162 LAIENMNNQFICNKKVHISYAFKKDSKGER 191
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+ NLD+ ++ L IF +G I + VMR+ D SK GF++++N + + A+E +
Sbjct: 108 NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENM 167
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
N + +++ ++ A KK + E G A + + + LNLY N
Sbjct: 168 NNQFICNKKVHISYAFKKDSKG-ERHGT---AAERFIAANKALNLYPLN 212
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 218 (81.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 60/210 (28%), Positives = 105/210 (50%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG 66
+F H + QE + + +++ NLD +E L ++F + G + + + RD +G
Sbjct: 1 MFTQH--KNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKING 58
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
+GFV +E + A LN K GKA + ++ Q+ K +
Sbjct: 59 YHAGYGFVEYEYEYECEYAANILNMTKL------FGKALRCNKATQD---------KRSF 103
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
D G NL+I NL D +D++ L ++FS FG I + KVMR+ SKG GF+++ E +
Sbjct: 104 DV--GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSD 161
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
A+ MN + I +K ++++ A +K+ + R
Sbjct: 162 LAIENMNNQFICNKKVHISYAFKKDSKGER 191
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+ NLD+ ++ L IF +G I + VMR+ D SK GF++++N + + A+E +
Sbjct: 108 NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENM 167
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
N + +++ ++ A KK + E G A + + + LNLY N
Sbjct: 168 NNQFICNKKVHISYAFKKDSKG-ERHGT---AAERFIAANKALNLYPLN 212
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 134 (52.2 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 134 (52.2 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 118 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 175
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 115 (45.5 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L S+ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITN 166
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
Score = 94 (38.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L S T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+
Sbjct: 107 NLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITN 166
Query: 89 LNGKK 93
NG K
Sbjct: 167 FNGHK 171
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 134 (52.2 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 134 (52.2 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 118 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 175
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 112 (44.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
Score = 94 (38.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 107 NLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 89 LNGKK 93
NG K
Sbjct: 167 FNGHK 171
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 134 (52.2 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + T ++A RA+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 192 MNGKMIVSKPLYVAVAQRKEE 212
+NG + SK + V+ A+ E
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 112 (44.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
Score = 94 (38.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 89 LNGKK 93
NG K
Sbjct: 167 FNGHK 171
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 134 (52.2 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 251 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 310
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 311 ASLNGYRLGDKILQVSFKTNKSHK 334
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 118 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 175
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 13 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 72
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 73 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 109
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 127 (49.8 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 89 LNGLRLQSKTIKVSYARPSSE 109
Score = 112 (44.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 115 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 174
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 175 FNGHKPPGSSEPITVKFAANPNQNK 199
Score = 94 (38.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 115 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 174
Query: 89 LNGKK 93
NG K
Sbjct: 175 FNGHK 179
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 215 (80.7 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 58/177 (32%), Positives = 87/177 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+FV L + D LK+ F G + A V+M GKS+ +G+V+FE+ A KA+E +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 90 NGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
GK+ D R + GK K Q+ + D L+I NL + +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK-QYGDSQSPPSD-----TLFIGNLSFNANR 283
Query: 146 EKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ L +F E+G + SC+V P KG G+V FS+ +EA AL MNG+ I +P
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRP 340
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 34/116 (29%), Positives = 56/116 (48%)
Query: 96 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 155
D E K +K E ++E +++ K + L++ L +IDD LK F
Sbjct: 133 DSEEEPSKKRKAEESKEEESAPVKKS-KPAASTEEPATLFVGRLSWNIDDAWLKREFEHI 191
Query: 156 GTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
G + +V M +G S+G G+V F + A +AL EM GK I +P+ + ++ K
Sbjct: 192 GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+ +F+ NL + ++L +FGEYG + S V D + K FG+V F + D+A A+E
Sbjct: 270 DTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALE 329
Query: 88 ALNGKKFDDR 97
A+NG+ + R
Sbjct: 330 AMNGEYIEGR 339
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 215 (80.7 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 58/177 (32%), Positives = 87/177 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+FV L + D LK+ F G + A V+M GKS+ +G+V+FE+ A KA+E +
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 90 NGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
GK+ D R + GK K Q+ + D L+I NL + +
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAK-QYGDSQSPPSD-----TLFIGNLSFNANR 283
Query: 146 EKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ L +F E+G + SC+V P KG G+V FS+ +EA AL MNG+ I +P
Sbjct: 284 DNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRP 340
Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 34/116 (29%), Positives = 56/116 (48%)
Query: 96 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 155
D E K +K E ++E +++ K + L++ L +IDD LK F
Sbjct: 133 DSEEEPSKKRKAEESKEEESAPVKKS-KPAASTEEPATLFVGRLSWNIDDAWLKREFEHI 191
Query: 156 GTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
G + +V M +G S+G G+V F + A +AL EM GK I +P+ + ++ K
Sbjct: 192 GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+ +F+ NL + ++L +FGEYG + S V D + K FG+V F + D+A A+E
Sbjct: 270 DTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALE 329
Query: 88 ALNGKKFDDR 97
A+NG+ + R
Sbjct: 330 AMNGEYIEGR 339
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 214 (80.4 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 158 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 215
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 216 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 210 K 210
K
Sbjct: 176 K 176
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 216 (81.1 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 58/191 (30%), Positives = 99/191 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
++FV +L +D L + F E Y ++ +A V+ D + G+SK +GFV F + ++ KA+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDD 145
+NG K R +G A + + +G + + T + +N +++ L S+ D
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
E LK+ FSEFG I S K+ P G KG GFV F A AL ++NG +I + + ++
Sbjct: 320 EDLKQPFSEFGEIVSVKI---PVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 374
Query: 206 VAQRKEERRAR 216
+ ++ R
Sbjct: 375 WGRNPANKQPR 385
Score = 154 (59.3 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 53/202 (26%), Positives = 91/202 (45%)
Query: 12 HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF--GEYGTITSAVVMRDG-DGKS 68
H + + A + ++V +L + L F E I S V+R+ +G S
Sbjct: 86 HHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSS 145
Query: 69 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK-GQFEQAMKETVD 127
+ +GFV FE+ D A K ++ NG + +++ L F K +
Sbjct: 146 EGYGFVEFESHDVADKVLQEFNGAPMPN-----------TDQPFRLNWASFSTGEKRLEN 194
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPS-GISKGSGFVAFSTPEEA 185
L++++ +L + D L E FSE + ++ + KV+ D + G SKG GFV F E
Sbjct: 195 NGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 254
Query: 186 SRALAEMNGKMIVSKPLYVAVA 207
++A+ EMNG S+ + + A
Sbjct: 255 TKAMTEMNGVKCSSRAMRIGPA 276
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 214 (80.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 158 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 215
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 216 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 210 K 210
K
Sbjct: 176 K 176
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 211 (79.3 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 57/187 (30%), Positives = 97/187 (51%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVM--RDGDGKSKCFGFVNFENADDAAKAVEA 88
+FV NL + L +F + GT+ A V+ R+ D +S+ FGFV + D+A AVE
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETD-QSRGFGFVTMSSVDEAETAVEK 210
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + R V KA + R + +E A + +Y+ NL +D+ +L
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR----------VYVGNLPWDVDNGRL 260
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
++LFSE G + +V+ D +G S+G GFV S +E + A++ ++G+ + + + V VA
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 208 QRKEERR 214
+ + RR
Sbjct: 321 EERPPRR 327
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFV 74
+ ER + F V+V NL + L+++F E+G + A V+ D + G+S+ FGFV
Sbjct: 232 RPERAPRVYEPAFR-VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
+ D+ +A+ AL+G+ + R V A+++ R
Sbjct: 291 TMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 214 (80.4 bits), Expect = 5.8e-15, P = 5.8e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 174 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 231
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 232 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 113
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 174 MGGQWLGGRQIRTNWATRK 192
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 214 (80.4 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 214 (80.4 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 214 (80.4 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 134 (52.2 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 270 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 329
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 330 ASLNGYRLGDKILQVSFKTNKSHK 353
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + T ++A RA+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 192 MNGKMIVSKPLYVAVAQRKEE 212
+NG + SK + V+ A+ E
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 127 (49.8 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ SE
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 112 (44.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 134 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 193
Query: 192 MNGKMIV--SKPLYVAVAQRKEERR 214
NG S+P+ V A + +
Sbjct: 194 FNGHKPPGSSEPITVKFAANPNQNK 218
Score = 94 (38.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L + T +D++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ +
Sbjct: 134 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 193
Query: 89 LNGKK 93
NG K
Sbjct: 194 FNGHK 198
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 213 (80.0 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 213 (80.0 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 205 (77.2 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 57/196 (29%), Positives = 100/196 (51%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 89
V++ NLDE +D + ++ + G I + + +D +S + +GFV F + +DA A +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + V KA ++ E+ G L++ NL + ++ L
Sbjct: 75 NGIRLYGKPIRVNKASADKQKSVEI----------------GAELFVGNLDPMVTEQVLY 118
Query: 150 ELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG + + KV RD S +SKG GFV+F+ E + A+A MNG+ +++K + V A
Sbjct: 119 DTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAY 178
Query: 209 RKEERRARLQAQFSQM 224
+K+ + R Q +M
Sbjct: 179 KKDGKGERHGDQAERM 194
Score = 44 (20.5 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 314 QQPLPIMPHQMP-PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPR--RDASVG 370
Q P +P Q P A + R M P D G G + +P + P S+
Sbjct: 205 QVPTQALPPQFTAPAAPAMPADMSRPMSTGPADQGMGRVPMLPPQLVGFSPNVATQQSLA 264
Query: 371 QP-MP-ITA 377
+P +P +TA
Sbjct: 265 RPGLPSVTA 273
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 213 (80.0 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 213 (80.0 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 58/175 (33%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS +E K +FE + ++ K +Y +
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASG 232
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ D+ +++ FS FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 214 (80.4 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 56/183 (30%), Positives = 100/183 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV NLD + TDE L +F + G + A ++ +G + + FV F + + A A+++ N
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEG--LNDPYAFVEFSDHNQATLALQSHN 99
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ ++E +V A + E G+ ++ ET F ++++ +L ID KL+E
Sbjct: 100 GRELLEKEMHVTWAFEPRE-----PGE-NRSKPETSRHF---HVFVGDLCSEIDSTKLRE 150
Query: 151 LFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F +FG ++ K++RD + KG GFV++ E+A RA+ EMNG + + + A R
Sbjct: 151 AFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATR 210
Query: 210 KEE 212
K +
Sbjct: 211 KPD 213
Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
Identities = 47/183 (25%), Positives = 85/183 (46%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+VFV +L L++ F ++G ++ A ++RD + K K +GFV++ +DA +A++
Sbjct: 133 HVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDE 192
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
+NG R W K + ER + +G D++ + + D I
Sbjct: 193 MNGAWLGRRTIRTNWATRKPDEDGERGGD-RGDRRGGGGGGRDRYHNQS---EKTYDEIF 248
Query: 145 DEKLKELFSEF-GTITSC---KVMR--DPSG-ISK-------GSGFVAFSTPEEASRALA 190
++ + S + G I + ++ R D G I++ G FV F T E A+RA+
Sbjct: 249 NQAAADNTSVYVGNIANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIV 308
Query: 191 EMN 193
+MN
Sbjct: 309 QMN 311
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 182 (69.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 86
+F+KNL+ STT+E LK +F + G + S + + G+ S FGFV + + A KA+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ L G D + V +++ ++ + + K+T K + ++N+ D
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSK-----ILVRNIPFQADKR 846
Query: 147 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 188
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 847 EIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 150 (57.9 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSG--ISKGS 174
E+ +E + G L+IKNL S +E LK +FS+ G + SC + + + +G +S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 175 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
GFV + PE+A +AL ++ G ++ S L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISER 811
Score = 128 (50.1 bits), Expect = 0.00012, P = 0.00012
Identities = 45/174 (25%), Positives = 82/174 (47%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 112
++R+ G + FV+F + ++ +A+ E + G+ F ++ K K+ +
Sbjct: 327 IVRNAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKP 386
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 171
+G+ +E D L+I+NL + +E L+ LFS+FG ++ D +
Sbjct: 387 -WQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKP 445
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
KG FV F PE A RA AE++G++ + L+V + K+E Q S +
Sbjct: 446 KGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYK 499
Score = 121 (47.7 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 34/130 (26%), Positives = 65/130 (50%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L N + + G L + E E + +F++NL ++T+EDL+++F ++G ++
Sbjct: 380 LKNSAKPWQGRTLGENEEEEDLADS--GRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYP 437
Query: 62 RDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQELKGQF 118
D K K F FV F + A +A ++G+ F R +V +K++ + + +G
Sbjct: 438 IDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSS 497
Query: 119 EQAMKETVDK 128
+ KE+ DK
Sbjct: 498 YKKKKESKDK 507
Score = 104 (41.7 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL ++ +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNH 61
Query: 89 LNGKKFDD 96
N + F D
Sbjct: 62 FN-RSFID 68
Score = 61 (26.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ VKNL T +L++ FG +G++ V++ +G G + V F +A KA L
Sbjct: 591 ILVKNLPAGTLVAELQETFGRFGSL-GRVLLPEG-GIT---AIVEFLEPLEARKAFRHLA 645
Query: 91 GKKFDDREWYV 101
KF Y+
Sbjct: 646 YSKFHHTPLYL 656
Score = 59 (25.8 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
+ +KNL +L+E F FG++ +V+ GI+ V F P EA +A +
Sbjct: 591 ILVKNLPAGTLVAELQETFGRFGSLG--RVLLPEGGIT---AIVEFLEPLEARKAFRHLA 645
Query: 194 GKMIVSKPLYV 204
PLY+
Sbjct: 646 YSKFHHTPLYL 656
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 215 (80.7 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 59/202 (29%), Positives = 102/202 (50%)
Query: 15 RKQERETVAIKTKFN-------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 67
RK E E A K N+FV NL + T+E L + F ++G +++ ++ G+
Sbjct: 256 RKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGR 315
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 127
S+ FG+V F NA DAAKA EA+ + D R+ + A + + + G F++ +
Sbjct: 316 SRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQ--GGFKERAQNRAR 373
Query: 128 KF------QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 180
F + L++ NL S +++ + E+F G + ++ D SG KG G+V +S
Sbjct: 374 SFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYS 433
Query: 181 TPEEASRALAEMNGKMIVSKPL 202
+ +EA +A E+ G I +P+
Sbjct: 434 SVDEARKAYNELQGAEIDGRPI 455
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/191 (29%), Positives = 96/191 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
++FV +L +D L + F E Y ++ +A V+ D + G+SK +GFV F + ++ KA+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 88 ALNGKKFDDREWYVGKAQ-KKSEREQELKGQFEQA-MKETVDKFQGLNLYIKNLGDSIDD 145
+NG K R +G A +K+ Q+ G + +++ L S+ D
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
E LK+ F+EFG I S K+ P G KG GFV F A AL ++NG +I + + ++
Sbjct: 318 EDLKQPFNEFGEIVSVKI---PVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLS 372
Query: 206 VAQRKEERRAR 216
+ ++ R
Sbjct: 373 WGRNPANKQPR 383
Score = 156 (60.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 56/205 (27%), Positives = 92/205 (44%)
Query: 12 HFLRKQERETV---AIKTKFNNVFVKNLDESTTDEDLKKIF--GEYGTITSAVVMRD-GD 65
H L Q R A + ++V +L + L F G+ I S V+R+ +
Sbjct: 81 HHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNN 140
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK-GQFEQAMKE 124
G S+ +GFV FE+ D A K + NG + +++ L F K
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPN-----------TDQPFRLNWASFSTGEKR 189
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPS-GISKGSGFVAFSTP 182
+ L++++ +L + D L E FSE + ++ + KV+ D + G SKG GFV F
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Query: 183 EEASRALAEMNGKMIVSKPLYVAVA 207
E ++A+ EMNG S+ + + A
Sbjct: 250 NERTKAMTEMNGVKCSSRAMRIGPA 274
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 189 (71.6 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 48/164 (29%), Positives = 87/164 (53%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 86
+F+KNL+ STT+E LK +F + G + S + + G S FGFV ++ + A KA+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ L G D + V +++ ++ + + A K+T K + ++N+ D
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSK-----ILVRNIPFQADSR 851
Query: 147 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 188
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 852 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRA 895
Score = 149 (57.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSG--ISKGS 174
E+ +E + G L+IKNL S +E LK +FS+ G + SC + + + +G +S G
Sbjct: 722 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 781
Query: 175 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
GFV + PE+A +AL ++ G ++ L V +++R
Sbjct: 782 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISER 816
Score = 136 (52.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 42/161 (26%), Positives = 81/161 (50%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 112
++R+ G + FV+F + ++ KA+ E + G+ F ++ KA K+ +
Sbjct: 325 IVRNAHGNKTGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKA 384
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 171
+G+ +E D L+++NL + +E L++LFS++G ++ D +
Sbjct: 385 -WQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKP 443
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
KG FV F PE A +A AE++G++ + L+V + K+E
Sbjct: 444 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 484
Score = 121 (47.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 36/129 (27%), Positives = 63/129 (48%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
N + + G L + E E + +FV+NL ++++EDL+K+F +YG ++ D
Sbjct: 380 NSTKAWQGRTLGEHEEEEDLADS--GRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPID 437
Query: 64 G-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQELKGQFE- 119
K K F FV F + A KA ++G+ F R +V +K++ + + G
Sbjct: 438 SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTPGSSSY 497
Query: 120 QAMKETVDK 128
+ KE+ DK
Sbjct: 498 KKKKESKDK 506
Score = 106 (42.4 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 89 LNGKKFDD 96
N K F D
Sbjct: 62 FN-KSFID 68
Score = 62 (26.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ KNL T +L++ FG +G++ V++ +G G + V F A +A KA L
Sbjct: 590 ILAKNLPAGTQAAELQETFGRFGSL-GRVLLPEG-GVT---AIVEFLEALEARKAFRHLA 644
Query: 91 GKKF 94
KF
Sbjct: 645 YSKF 648
Score = 50 (22.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL +L+E F FG++ +V+ G++ V F EA +A +
Sbjct: 593 KNLPAGTQAAELQETFGRFGSLG--RVLLPEGGVT---AIVEFLEALEARKAFRHLAYSK 647
Query: 197 IVSKPLYV 204
PLY+
Sbjct: 648 FHHVPLYL 655
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 133 (51.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 90 NGKKFDDREWYVG-KAQKK 107
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGK--MIVSKPLYVAVAQRKEER 213
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 111 (44.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ + ++++++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 133 (51.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 90 NGKKFDDREWYVG-KAQKK 107
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGK--MIVSKPLYVAVAQRKEER 213
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 111 (44.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ + ++++++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 133 (51.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 90 NGKKFDDREWYVG-KAQKK 107
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGK--MIVSKPLYVAVAQRKEER 213
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 111 (44.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ + ++++++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 133 (51.9 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 90 NGKKFDDREWYVG-KAQKK 107
NG + +R V K K+
Sbjct: 347 NGYRLGERVLQVSFKTSKQ 365
Score = 128 (50.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 284 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K+ +
Sbjct: 344 ASLNGYRLGERVLQVSFKTSKQHK 367
Score = 126 (49.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 27/95 (28%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGK--MIVSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ + ++P+ V A ++ QA +Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQKTG--QALLTQL 218
Score = 111 (44.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/65 (30%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ + ++++++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 136 (52.9 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 128 (50.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS+FG I + +++ D +G+S+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKG 214
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA S +
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKSS--QALLSHL 247
Score = 121 (47.7 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 113 (44.8 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 21/65 (32%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F ++G I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKG 214
Query: 89 LNGKK 93
LNG+K
Sbjct: 215 LNGQK 219
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 135 (52.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 131 (51.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 262 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 322 ASLNGYRLGDRVLQVSFKTNKTHK 345
Score = 116 (45.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 197 (74.4 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 48 (22.0 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLG 336
+P P MPH MPPRG + P+G
Sbjct: 331 RPPPGMPHPGPPPMGMPPRGPHFGSPMG 358
Score = 48 (22.0 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 19/57 (33%), Positives = 20/57 (35%)
Query: 318 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
P PH PP G +P MQ G G P P G P R G P P
Sbjct: 286 PPHPHAFPPGG--MHHPGMPPMQVHHGPPGMGQHHPGPPGSGGQPPPRPPP-GMPHP 339
Score = 46 (21.3 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 19/57 (33%), Positives = 22/57 (38%)
Query: 318 PIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
P+ H PP G + P G Q P G P P MG +P R G PM
Sbjct: 304 PMQVHHGPPGMGQHHPGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPHFGSPM 357
Score = 41 (19.5 bits), Expect = 1.7e-14, Sum P(3) = 1.7e-14
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 273 LVPGMRPAGAPMPNFF 288
L PG+ P G P P F
Sbjct: 228 LGPGVTPPGLPPPGSF 243
Score = 40 (19.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 316 PLPIMPHQMPPRGHAYRYPL 335
PLP P Q PP G R PL
Sbjct: 395 PLPPRPAQRPP-GVPPRGPL 413
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 116 (45.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 135 (52.6 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 131 (51.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 116 (45.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 135 (52.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 133 (51.9 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 131 (51.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 128 LNGLRLQTKTIKVSYARPSS 147
Score = 126 (49.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 213
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 214 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 246
Score = 122 (48.0 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 303 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 363 ASLNGYRLGDRVLQVSFKTNKTHK 386
Score = 116 (45.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 213
Query: 89 LNGKK 93
LNG+K
Sbjct: 214 LNGQK 218
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 137 (53.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 90 NGKKFDDREWYVGKAQK 106
NG + DR V K K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 135 (52.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 131 (51.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 126 (49.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 247
Score = 118 (46.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 190 AEMNGKMIVSKPLYV 204
A +NG + + L V
Sbjct: 365 ASLNGYRLGDRVLQV 379
Score = 116 (45.9 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 89 LNGKK 93
LNG+K
Sbjct: 215 LNGQK 219
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 135 (52.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 133 (51.9 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 126 (49.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 247
Score = 122 (48.0 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 116 (45.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 89 LNGKK 93
LNG+K
Sbjct: 215 LNGQK 219
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 190 (71.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 210 K 210
K
Sbjct: 185 K 185
Score = 129 (50.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 89 LNGKKFDDREWYVGKAQKK 107
+ G+ R+ A +K
Sbjct: 167 MGGQWLGGRQIRTNWATRK 185
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 205 (77.2 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 53/200 (26%), Positives = 100/200 (50%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74
++E++T + ++V NL + T +L +IFGE GT+ ++ D +S+ FGFV
Sbjct: 103 EEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE-LKGQFEQAMKETVDKFQGLN 133
+ ++A +A++ N + R V + E E ++ + + VD
Sbjct: 163 TMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPH--K 220
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEM 192
+Y NLG ++ + LK+ F + + KV+ + + G S+G GF++F + E ALA M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 193 NGKMIVSKPLYVAVAQRKEE 212
NG + + L + +A +E+
Sbjct: 281 NGVEVEGRALRLNLASEREK 300
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 170 (64.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 48/164 (29%), Positives = 87/164 (53%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD--GK--SKCFGFVNFENADDAAKAV 86
+F+KNL+ +TT+ LK+ F + G + S + + D G S FGFV ++ + A KA+
Sbjct: 719 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 778
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
L G D + V K +++ R +K + K+TV K + + ++N+
Sbjct: 779 RRLQGCIVDGHKLEV-KISERAVRPA-VKSSRK---KQTVKKQKTSKILVRNIPFQATVR 833
Query: 147 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 188
+++ELFS FG + + ++ + +G +G GFV F T ++A +A
Sbjct: 834 EIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 877
Score = 157 (60.3 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
K VEAL K+ ++R G K E + + E ++ + G L+IKNL +
Sbjct: 670 KNVEALE-KEGEERLVPDGDTTVKGSEETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTT 728
Query: 144 DDEKLKELFSEFGTITSCKVMR--DPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+ LKE FS+ G + SC + + D +G +S G GFV + PE A +AL + G ++
Sbjct: 729 TEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDG 788
Query: 200 KPLYVAVAQR 209
L V +++R
Sbjct: 789 HKLEVKISER 798
Score = 120 (47.3 bits), Expect = 0.00085, P = 0.00085
Identities = 45/217 (20%), Positives = 108/217 (49%)
Query: 16 KQERETVAIKTKF-NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGF 73
KQ+ + + + + V ++ + T++ +++ F + A+ M ++ GKS F F
Sbjct: 281 KQKNQVSSAEASTPHTVKLRGAPLNVTEQKIREFFSPLKPL--AIRMGKNTQGKSTGFIF 338
Query: 74 VNFENADDAAKAVEALNGKKFDDREWY-VGKAQKKSEREQELKGQFE--QAMKETVDKFQ 130
V+ ++ + KA++ K++ ++ V + + + K + Q MK ++ +
Sbjct: 339 VDLKSEAEVQKALK--RKKEYIGGQYVEVSRCENAPKETVTAKTDDQPWQRMKRDDEEEE 396
Query: 131 GLN----LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
L+ L+++NL + +E L+++FS++G ++ D + KG F+ + PE A
Sbjct: 397 DLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHA 456
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 222
+A AEM+G++ + +++ + K+ + + A+ S
Sbjct: 457 VKAYAEMDGQVFQGRMMHLLPSTIKKLKIEDIDAEES 493
Score = 110 (43.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74
K++ E ++ +FV+NL ++T+EDL+KIF +YG ++ D K K F F+
Sbjct: 389 KRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFI 448
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA---MKETVDK 128
+ + A KA ++G+ F R ++ + K + +++ + + KE DK
Sbjct: 449 TYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKKLKIEDIDAEESSSYKKQKEAKDK 505
Score = 108 (43.1 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL ++ +K+F +GT+T + DGK + FGF+ +++ D+A A+
Sbjct: 2 SRLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAALNH 61
Query: 89 LNGKKFDD 96
N + F D
Sbjct: 62 FN-RSFID 68
Score = 62 (26.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
+ +KNL + +L+ +F + G++ +V+ GI+ V F P EA +A ++
Sbjct: 589 ILVKNLPATTSTAELEAVFGKHGSLG--RVLLPTGGIT---AIVEFLEPIEAKQAFTKLA 643
Query: 194 GKMIVSKPLYV 204
S PLY+
Sbjct: 644 YSKFHSVPLYL 654
Score = 61 (26.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ VKNL +T+ +L+ +FG++G++ V++ G G + V F +A +A L
Sbjct: 589 ILVKNLPATTSTAELEAVFGKHGSL-GRVLLPTG-GIT---AIVEFLEPIEAKQAFTKLA 643
Query: 91 GKKFDDREWYV 101
KF Y+
Sbjct: 644 YSKFHSVPLYL 654
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 208 (78.3 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 54/174 (31%), Positives = 87/174 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+FV L S DE LKK F G + A V+ G +S+ +G+V+FEN A KA++ +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
GK+ D R + K + +F E D L++ NL + D + +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSD-----TLFLGNLSFNADRDAIF 284
Query: 150 ELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
ELF++ G + S ++ P KG G+V FS E+A +AL + G+ I ++P+
Sbjct: 285 ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 31/101 (30%), Positives = 51/101 (50%)
Query: 103 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 162
K++ E E E +Q +ET + +++ L SIDDE LK+ F G + +
Sbjct: 142 KSEDAEEEEDEESSNKKQKNEETEEP---ATIFVGRLSWSIDDEWLKKEFEHIGGVIGAR 198
Query: 163 VMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
V+ + + S+G G+V F A +A+ EM GK I +P+
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 239
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 113 ELKGQFEQAMK-ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGI 170
++ +E M E +D NL + L ++ ++L+ LFS G + S K++RD +G
Sbjct: 16 DMSNGYEDHMADELIDS--KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGH 73
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
S G GFV + P +A RA++ +NG + SK + V+ A+
Sbjct: 74 SLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYAR 111
Score = 131 (51.2 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 257 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAI 316
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + K L V+ K +
Sbjct: 317 ASLNGYRLGDKILQVSFKTSKSHK 340
Score = 124 (48.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV + ++AA A+ +L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + D+ V KS +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 122 (48.0 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ + ++L+ +F G + SA ++RD G S +GFVN+ N +DA +A+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 89 LNGKKFDDREWYVGKAQKKSE 109
LNG + + V A+ S+
Sbjct: 95 LNGLRLQSKTIKVSYARPSSD 115
Score = 116 (45.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
D + NLYI L ++ + ++E+F +G I + +V+ D SG+S+G F+ F EA
Sbjct: 115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEA 174
Query: 186 SRALAEMNGK 195
A+ ++NG+
Sbjct: 175 EDAIKDLNGQ 184
Score = 111 (44.1 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+++ L ++ T +D++++FG YG I ++ V+ D G S+ F+ F+ +A A++
Sbjct: 121 NLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKD 180
Query: 89 LNGKK 93
LNG+K
Sbjct: 181 LNGQK 185
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 175 (66.7 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 123 KETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDPSGISKGSGFVAFS 180
KE DK G NL+I NL +D+ L + FS FGTI + KVMRD +G+SKG F+ F
Sbjct: 88 KENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFD 147
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
+ E + A+ MN + + +KP+ V A++K+
Sbjct: 148 SFEASDAAIEAMNSQFLCNKPISVTYARKKD 178
Score = 137 (53.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT-SAVVMRDGDGKSKCFG 72
++K+ ++ V I N+F+ NLD + L F +GTI + VMRD +G SK F
Sbjct: 86 IKKENKDKVDIGA---NLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFA 142
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 112
F+NF++ + + A+EA+N + ++ V A+KK E+
Sbjct: 143 FINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNER 182
Score = 55 (24.4 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 14/77 (18%), Positives = 37/77 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
+ +++LD T+ L ++F + + + +D + +V F+++ DA A++ +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 90 NGKKFDDREWYVGKAQK 106
+ ++E + K K
Sbjct: 75 KFVRLFNKEIKIKKENK 91
Score = 52 (23.4 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 314 QQPLPI---MPHQMPPRGHAYRYP---LGRNMQDF-PFDMGAGSMLPVP 355
Q P+P +PHQ+ P H + P + F P M G M P P
Sbjct: 308 QHPIPHPHPLPHQLRPHPHPHHPPPPPFNPMLMQFNPMMMPFGGMPPPP 356
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 211 (79.3 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 133 NLYIKNLGDSI--DDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRAL 189
NL++KNL D+I + ++L+ELFS+FG I SC + PS ISKG GFV+FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 226
+NG + K L+V A+++E+R+ RL A FSQ P
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYP 516
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 30 NVFVKNLDESTTD--EDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAV 86
N+FVKNLD++ + L+++F ++G I S + + SK +GFV+F + +A +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
LNG F + +V A+K+ +R++ L F Q+ V
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVV 519
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 132 (51.5 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 129 (50.5 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 191 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 223
Score = 128 (50.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 105 LNGLRLQTKTIKVSYAR 121
Score = 124 (48.7 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 105 LNGLRLQTKTIKVSYARPSS 124
Score = 119 (46.9 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 267 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 327 ASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 117 (46.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 89 LNGKK 93
LNG+K
Sbjct: 191 LNGQK 195
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 175 (66.7 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 52/171 (30%), Positives = 90/171 (52%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM--RDGDGK--SKCFGFVNFENADDAAK 84
+ +F+KNL+ T++E L+K F + G + S + RD GK S +GFV ++ + A K
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM--KETVDKFQGLNLYIKNLGDS 142
A+ L D+ + V K SERE +K QA K+T K + ++N+
Sbjct: 762 AMRQLQHCTVDEHQLEV----KISERE--VKSGVAQAKRKKQTARKQTTSKILVRNIPFQ 815
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEM 192
++L+ELF FG + + ++ + G S +G GF+ F T ++A +A + +
Sbjct: 816 ATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 140 (54.3 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 33/111 (29%), Positives = 61/111 (54%)
Query: 105 QKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
+K + + ++ + E+ +E D+ G L+IKNL +E L++ FS+ G + SC +
Sbjct: 674 EKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTI 733
Query: 164 M--RDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
RD +G +S G GFV + TPE A +A+ ++ + L V +++R+
Sbjct: 734 SKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISERE 784
Score = 140 (54.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 45/207 (21%), Positives = 98/207 (47%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 74
+K R + T+F V ++ + ++ +K+ + ++ DG++ + +V
Sbjct: 277 QKSTRPAIEPTTEFT-VKLRGAPFNVKEQQVKEFMMPLKPVAIRFA-KNSDGRNSGYVYV 334
Query: 75 NFENADDAAKAV----EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK---ETVD 127
+ + + +A+ + + G+ + K ++S + E++ F + +K E D
Sbjct: 335 DLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEED 394
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 186
+ L+I+N+ + +E LKELFS+ G ++ D + KG FV + PE A
Sbjct: 395 VAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 454
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEER 213
ALA+++G + L+V ++ K+E+
Sbjct: 455 SALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 124 (48.7 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL ++ +K+F ++GT+T + DGK + FGFV F+ +DA KA++
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 89 LNGKKFDD 96
N K F D
Sbjct: 62 FN-KSFVD 68
Score = 120 (47.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 9 FVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGK 67
FV +E E VA + +F++N+ + T+EDLK++F ++G ++ + D K
Sbjct: 382 FVRELKDDEEEEDVA---ESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKK 438
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
K F FV + ++A A+ L+G F R +V ++ K E+ +
Sbjct: 439 PKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQ 484
Score = 78 (32.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
+ +KNL + L+ LFS G++ +V+ PSG++ V F P EA RA ++
Sbjct: 587 ILVKNLPSGVQVADLEALFSPHGSLG--RVLLPPSGLT---AIVEFLEPTEAKRAFMKLA 641
Query: 194 GKMIVSKPLYV 204
PLY+
Sbjct: 642 YTKFQHVPLYL 652
Score = 53 (23.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 97 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
R W Q S+++ E K EQ KE + LN+ LGD DE +E +
Sbjct: 87 RPWSKHTRQPSSKKDTEEKKTHEQGEKEKKKPKKILNV----LGDLEKDESFQEFLA 139
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 129 (50.5 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 117 (46.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 89 LNGKK 93
LNG+K
Sbjct: 193 LNGQK 197
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 129 (50.5 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 117 (46.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 89 LNGKK 93
LNG+K
Sbjct: 193 LNGQK 197
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 208 (78.3 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 57/197 (28%), Positives = 104/197 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC--FGFVNFENADDAAKAVEA 88
++V LD T++ LK+IF G + S ++ D + SK +GFV F++ A +A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG++ E V A + + +E +T + F ++++ +L + ++DE L
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKE----------DTSNHF---HIFVGDLSNEVNDEVL 198
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG+++ +VM D +G S+G GFVAF +A +AL M+G+ + S+ + A
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWA 258
Query: 208 QRKEERRARLQAQFSQM 224
+K + Q + M
Sbjct: 259 NQKGQPSISQQQAMAAM 275
Score = 113 (44.8 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F DA KA+ +
Sbjct: 183 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTS 242
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQEL 114
++G+ R W K Q ++Q +
Sbjct: 243 MDGEWLGSRAIRCNWANQKGQPSISQQQAM 272
Score = 78 (32.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+ NL + LF FG + ++ D +G F+ T E A+ A+ ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 195 KMIVSKPL 202
+ +PL
Sbjct: 366 YNVNGRPL 373
>TAIR|locus:2090654 [details] [associations]
symbol:MPC "maternally expressed pab C-terminal"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006417 "regulation of translation" evidence=TAS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR002004 Pfam:PF00658
PROSITE:PS51309 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006417 GO:GO:0003723 EMBL:AB025624 Gene3D:1.10.1900.10
SUPFAM:SSF63570 HSSP:P11940 EMBL:BT024667 IPI:IPI00529629
RefSeq:NP_188566.1 UniGene:At.50202 ProteinModelPortal:Q9LT82
SMR:Q9LT82 STRING:Q9LT82 EnsemblPlants:AT3G19350.1 GeneID:821469
KEGG:ath:AT3G19350 TAIR:At3g19350 eggNOG:NOG272598
HOGENOM:HOG000153094 InParanoid:Q9LT82 OMA:VEELEPQ PhylomeDB:Q9LT82
ProtClustDB:CLSN2915372 Genevestigator:Q9LT82 Uniprot:Q9LT82
Length = 103
Score = 187 (70.9 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 40/72 (55%), Positives = 54/72 (75%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA+ P++QR L+GE+L+ +VE+LE A K+TGM+LE+DQ +VLHLL +P+A K V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 442 AMEVL-RSVAQQ 452
AMEVL S QQ
Sbjct: 83 AMEVLAHSFLQQ 94
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
Score = 129 (50.5 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKTS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 117 (46.2 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 89 LNGKK 93
LNG+K
Sbjct: 198 LNGQK 202
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 129 (50.5 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 117 (46.2 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 89 LNGKK 93
LNG+K
Sbjct: 198 LNGQK 202
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 129 (50.5 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 218
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 119 (46.9 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 117 (46.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 129 (50.5 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 218
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 119 (46.9 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 117 (46.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 50 (22.7 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDM-GAGSMLP 353
+P P MPH MPPRG + P+G P M G ++P
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP 381
Score = 43 (20.2 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
PH + GH + P G Q P G P P MG +P R G PM
Sbjct: 316 PHGL---GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 267 FGYQQQLVPGMRPAGAP 283
+GYQ+ +P RP P
Sbjct: 394 YGYQRGPLPPPRPTPRP 410
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 50 (22.7 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDM-GAGSMLP 353
+P P MPH MPPRG + P+G P M G ++P
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP 381
Score = 43 (20.2 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
PH + GH + P G Q P G P P MG +P R G PM
Sbjct: 316 PHGL---GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 267 FGYQQQLVPGMRPAGAP 283
+GYQ+ +P RP P
Sbjct: 394 YGYQRGPLPPPRPTPRP 410
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 50 (22.7 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDM-GAGSMLP 353
+P P MPH MPPRG + P+G P M G ++P
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP 381
Score = 43 (20.2 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
PH + GH + P G Q P G P P MG +P R G PM
Sbjct: 316 PHGL---GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 267 FGYQQQLVPGMRPAGAP 283
+GYQ+ +P RP P
Sbjct: 394 YGYQRGPLPPPRPTPRP 410
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 50 (22.7 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDM-GAGSMLP 353
+P P MPH MPPRG + P+G P M G ++P
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP 381
Score = 43 (20.2 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
PH + GH + P G Q P G P P MG +P R G PM
Sbjct: 316 PHGL---GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 267 FGYQQQLVPGMRPAGAP 283
+GYQ+ +P RP P
Sbjct: 394 YGYQRGPLPPPRPTPRP 410
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 197 (74.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 50 (22.7 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDM-GAGSMLP 353
+P P MPH MPPRG + P+G P M G ++P
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP 381
Score = 43 (20.2 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
PH + GH + P G Q P G P P MG +P R G PM
Sbjct: 316 PHGL---GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 267 FGYQQQLVPGMRPAGAP 283
+GYQ+ +P RP P
Sbjct: 394 YGYQRGPLPPPRPTPRP 410
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 208 (78.3 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 62/178 (34%), Positives = 90/178 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 89
VFV L + D+ L + F EYGTI A V+ DG G+SK +G+V+FE + AAKA A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE-AAKAAVAA 323
Query: 90 NG-KKFDDREWYVGKAQKKSEREQ----ELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
NG K+ D R + + + Q + G F + E D +++ NL +
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSD-----TVFVGNLSFNAT 378
Query: 145 DEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
++ L F G I S ++ DP SG KG G+V FS + A + + EMNG I +P
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
Score = 134 (52.2 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 164
+KK + E + + + K + D + +++ L ++DD+ L + F E+GTI +V+
Sbjct: 236 EKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295
Query: 165 RD-PSGISKGSGFVAFSTPEEASRALA-----EMNGKMI 197
D SG SKG G+V F TPE A A+A E++G+M+
Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 38 (18.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 450 AQQQANNPADQLASLS 465
AQQ+A N DQL+ S
Sbjct: 350 AQQRAGNFGDQLSEPS 365
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 129 (50.5 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 117 (46.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 89 LNGKK 93
LNG+K
Sbjct: 193 LNGQK 197
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 129 (50.5 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 117 (46.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 89 LNGKK 93
LNG+K
Sbjct: 193 LNGQK 197
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 129 (50.5 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 209 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 241
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 123 LNGLRLQTKTIKVSYAR 139
Score = 124 (48.7 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 123 LNGLRLQTKTIKVSYARPSS 142
Score = 119 (46.9 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 298 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 358 ASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 117 (46.2 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 89 LNGKK 93
LNG+K
Sbjct: 209 LNGQK 213
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 129 (50.5 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 197 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 229
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 111 LNGLRLQTKTIKVSYAR 127
Score = 124 (48.7 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 111 LNGLRLQTKTIKVSYARPSS 130
Score = 119 (46.9 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 300 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 360 ASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 117 (46.2 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 89 LNGKK 93
LNG+K
Sbjct: 197 LNGQK 201
>POMBASE|SPAC1610.03c [details] [associations]
symbol:crp79 "poly(A) binding protein Crp79"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=IMP] [GO:0008143 "poly(A) RNA
binding" evidence=IDA] [GO:0030437 "ascospore formation"
evidence=IDA] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0061013 "regulation of mRNA catabolic process" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC1610.03c GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0006406 GO:GO:0030437
eggNOG:COG0724 GO:GO:0008143 GO:GO:0061013 EMBL:AF432874
EMBL:AB054316 RefSeq:NP_001018242.1 ProteinModelPortal:Q9P6M8
STRING:Q9P6M8 EnsemblFungi:SPAC1610.03c.1 GeneID:3361521
KEGG:spo:SPAC1610.03c OrthoDB:EOG486CPJ NextBio:20811563
Uniprot:Q9P6M8
Length = 710
Score = 189 (71.6 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 47/99 (47%), Positives = 63/99 (63%)
Query: 133 NLYIKNLGDSIDDEK--LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 189
NLY+KNL D++ K L++LFS FG+I S + P SGISKG GFVAF E A RA
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
+NG M+ K ++V A+RK +R RLQA F+ +P +
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFAN-KPTS 480
Score = 132 (51.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/103 (33%), Positives = 59/103 (57%)
Query: 29 NNVFVKNLDES--TTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGFVNFENADDAAKA 85
+N++VKNLD++ T L+ +F +G+I S+++ G SK +GFV F + A +A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 128
+ LNG + +V A++KS+R + L+ F A K T ++
Sbjct: 442 KDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFF--ANKPTSEQ 482
Score = 67 (28.6 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-----KSKCF---------GFV 74
+ ++V N+D +DE++ K F +YG + S + R D K+K F GFV
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVES-IFRRLLDSFYPKEKAKPFKPPKNGVQYGFV 75
Query: 75 NFENADDAAKAVEALNGKKFDDRE 98
F NA+ + ++ G R+
Sbjct: 76 KFVNAESIEEVLKDAKGMTLGQRK 99
Score = 56 (24.8 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ NL T DL F + G + V + D + +G V ++ + A+E LN
Sbjct: 207 ILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEKLN 264
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 129 (50.5 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 117 (46.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 89 LNGKK 93
LNG+K
Sbjct: 198 LNGQK 202
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 129 (50.5 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 117 (46.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 89 LNGKK 93
LNG+K
Sbjct: 198 LNGQK 202
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 135 (52.6 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS +E +
Sbjct: 293 FNGQFLFDRPMHV-KMDDKSVPHEEYR 318
Score = 127 (49.8 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 191 EMNGKMIVSKPLYVAVAQRK---EERRA 215
NG+ + +P++V + + EE R+
Sbjct: 292 MFNGQFLFDRPMHVKMDDKSVPHEEYRS 319
Score = 123 (48.4 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G M+E + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 506 LSGPMGSGMRERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 563
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 564 CGTVRFDSPESAEKACRIMNGIKISGREIDV 594
Score = 91 (37.1 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 160 TMN--KYD 165
Score = 42 (19.8 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMP 374
G GSM V MG G+ R +S + P
Sbjct: 462 GMGSMNSVTGGMGMGLDRMSSSFDRMGP 489
>TAIR|locus:2053679 [details] [associations]
symbol:AT2G15500 "AT2G15500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR eggNOG:COG0724
EMBL:AC006248 IPI:IPI00526210 PIR:G84529 RefSeq:NP_179152.1
UniGene:At.52752 ProteinModelPortal:Q9ZQG2 SMR:Q9ZQG2
EnsemblPlants:AT2G15500.1 GeneID:816042 KEGG:ath:AT2G15500
TAIR:At2g15500 Genevestigator:Q9ZQG2 Uniprot:Q9ZQG2
Length = 132
Score = 160 (61.4 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 30/49 (61%), Positives = 37/49 (75%)
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
AVE+L G FDD++W V +AQKKSERE ELK +EQ++KE DKFQ N
Sbjct: 29 AVESLKGNTFDDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
Score = 47 (21.6 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 9/10 (90%), Positives = 10/10 (100%)
Query: 172 KGSGFVAFST 181
+GSGFVAFST
Sbjct: 79 RGSGFVAFST 88
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 206 (77.6 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 53/182 (29%), Positives = 99/182 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NLD++ T++ LK+ F G I + +M D + K+ + FV + + DA A++ LN
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 136
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
GK+ ++ + K + F+ + D F NL++ +L ++DDE L+
Sbjct: 137 GKQIENN---IVK----------INWAFQSQQSSSDDTF---NLFVGDLNVNVDDETLRN 180
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F +F + S VM D +G S+G GFV+F++ ++A A+ M G+ + +PL + A +
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Query: 210 KE 211
++
Sbjct: 241 RD 242
Score = 117 (46.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+FV +L+ + DE L+ F ++ + S VM D G S+ +GFV+F + DDA A+++
Sbjct: 163 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 222
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
+ G+ + R + A K R+ ++Q + G Y N ++++
Sbjct: 223 MQGQDLNGRPLRINWAAK---RDNNNNNNYQQRRNYGNNNRGGFRQYNSNNNNNMN 275
Score = 49 (22.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
YI N+ + L LF FG I K P KG F+ + T E+A+
Sbjct: 344 YIGNIPHFATEADLIPLFQNFGFILDFK--HYPE---KGCCFIKYDTHEQAA 390
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 132 (51.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 240 FNGQFLFDRPMHV-KMDDKSVPHEDYR 265
Score = 126 (49.4 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 179 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 238
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 239 MFNGQFLFDRPMHV 252
Score = 123 (48.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G M+E + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 439 LSGPMGSGMRERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 496
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 497 CGTVRFDSPESAEKACRIMNGIKISGREIDV 527
Score = 91 (37.1 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 47 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 106
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 107 TMN--KYD 112
Score = 39 (18.8 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 334 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
P+G +++ P G G M V MG G+ R +S + P
Sbjct: 384 PVGSGIKN-PGG-GMGGMNSVTGGMGMGLDRMSSSFDRMGP 422
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 133 (51.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 242
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 243 FNGQFLFDRPMHV-KMDDKSVPHEDFR 268
Score = 126 (49.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 182 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 241
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 242 MFNGQFLFDRPMHV 255
Score = 122 (48.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 116 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
G AMKE + +G ++++NL + +KLKE FS+ G + ++ + +G SKG G
Sbjct: 449 GPMGGAMKERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCG 506
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYV 204
V F +PE A +A MNG I + + V
Sbjct: 507 TVRFDSPESAEKACRIMNGIKISGREIDV 535
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 50 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 109
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 110 TMN--KYD 115
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 133 (51.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 126 (49.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 116 (45.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 133 (51.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 126 (49.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 116 (45.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 89 LNGKK 93
LNG+K
Sbjct: 186 LNGQK 190
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 52/181 (28%), Positives = 98/181 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + A KE D ++++ +L + ++DE L +
Sbjct: 147 GRRVHQSEIRVNWAYQAAT----------SATKE--DTSNHFHIFVGDLSNEVNDEVLTQ 194
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 195 AFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 210 K 210
K
Sbjct: 255 K 255
Score = 116 (45.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + DA KA+ +
Sbjct: 177 HIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSS 236
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQEL 114
++G+ R W K Q ++Q +
Sbjct: 237 MDGEWLGSRAIRCNWANQKGQPSIAQQQAM 266
Score = 70 (29.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
+E + +T +Q Y+ NL + LF FG + + D +G F+
Sbjct: 290 YEMVVNQT-PAYQ-TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFI 342
Query: 178 AFSTPEEASRALAEMNGKMIVSKPL 202
+ E A++A+ +NG + +PL
Sbjct: 343 KMDSHENAAQAICGLNGYNVNGRPL 367
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 197 (74.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 125 (49.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 161 AMNGQYLCNRPITVSYAFKKDSK 183
Score = 47 (21.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 315 QPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDM-GAGSMLP 353
+P P MPH +PPRG + P+G P M G ++P
Sbjct: 336 RPPPGMPHPGPPPMGLPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP 381
Score = 44 (20.5 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
PH + GH + P G Q P G P P MG +P R G PM
Sbjct: 316 PHGL---GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--LPPRGPPFGSPM 362
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 267 FGYQQQLVPGMRPAGAP 283
+GYQ+ +P RP P
Sbjct: 394 YGYQRGPLPPPRPTPRP 410
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 205 (77.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 60/190 (31%), Positives = 96/190 (50%)
Query: 16 KQERETVAIKTKF------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKS 68
++E E A KTK + +FV NL + D L + F GT+TSA V+ D + G+S
Sbjct: 220 EEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRS 279
Query: 69 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 128
K FG+V+F ++A KA G D RE V + K+ + G + +TV
Sbjct: 280 KGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSP 339
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
+ L++ NL D++ + FSE + S ++ + SG KG G+V F++ E+A
Sbjct: 340 -ESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 188 ALAEMNGKMI 197
A ++NG+ I
Sbjct: 399 AFEQLNGQSI 408
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 43/114 (37%), Positives = 61/114 (53%)
Query: 95 DDREWYVGKAQ---KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
DD E K + KK + E+E + ++ E DK L++ NL ++DD L E
Sbjct: 201 DDEEEKPAKTEAPSKKRKAEEEEEAPAKKTKTEESDKPS--TLFVGNLSWNVDDAMLAEE 258
Query: 152 FSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
F GT+TS +V+ D SG SKG G+V F+TPEEA +A E G I + + V
Sbjct: 259 FKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKV 312
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 186 (70.5 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 58/207 (28%), Positives = 97/207 (46%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 89
+FV L S E L+++F + G + V+ + K+ + FG+V F +D +A++ +
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQA---MKETVDKFQGL-----NLYIKNLGD 141
F+ + V A+KK + + KG+ E + KE K + L I+NL
Sbjct: 66 T--TFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVADKKARLIIRNLSF 123
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
++ LK +F ++G + + R P G +G FV F EA +AL MN K I +
Sbjct: 124 KCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRT 183
Query: 202 LYV--AVAQRKEERRARLQAQFSQMRP 226
+ V AVA+ K + A + RP
Sbjct: 184 VAVDWAVAKDKYKNTQSASAP-GEKRP 209
Score = 149 (57.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
K ++ VA K + ++NL +++DLK +FG+YG + + R DGK + F FV
Sbjct: 103 KPKKPKVADKKA--RLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQ 160
Query: 76 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQ 117
F+N +A KA++++N K+ R +W V K + K+ + G+
Sbjct: 161 FKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGE 206
Score = 122 (48.0 bits), Expect = 0.00039, P = 0.00039
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 189
GL L++ L S E+L+ELFS+ G + C V+ + S +G G+V FS E+ RAL
Sbjct: 3 GLTLFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 226
E+ + V +A++K+ +++ + + P
Sbjct: 63 KEIT--TFEGCKINVTIAKKKQRNKSKEKGENENSEP 97
Score = 108 (43.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 34/129 (26%), Positives = 63/129 (48%)
Query: 101 VGKAQKKSEREQELKGQFEQAMKETV--DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 158
+ ++ SE +++ Q + K + D +G ++I+NL ++E+L EL +FG +
Sbjct: 294 LAQSDTNSEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDL 353
Query: 159 TSCKVMRDP-SGISKGSGFVAFSTPEEASRAL------AEMNGKMIVSKPLYVAVAQRKE 211
+++ P + SKG F F T E A + L E G + + L V +A ++
Sbjct: 354 KYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLRVDLAVTRD 413
Query: 212 ERRARLQAQ 220
E A+LQ +
Sbjct: 414 EA-AKLQTK 421
Score = 88 (36.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 36/125 (28%), Positives = 54/125 (43%)
Query: 107 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-----SEFGT-ITS 160
K ER + LK Q +K+ L + NL +DD++L++L E G +
Sbjct: 457 KRERFELLK---HQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNATRGEKGVRLKE 513
Query: 161 CKVMRDPSGI-------SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
C+VMRD G+ S G F F E A AL +N + PL + + E
Sbjct: 514 CRVMRDLKGVHGKVKGQSLGYAFAEFQEHEHALTALRHINNNPEIFGPLKRPIVEFSLED 573
Query: 214 RARLQ 218
R +L+
Sbjct: 574 RRKLK 578
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 134 (52.2 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
NG+ DR +V K KS ++ + +A
Sbjct: 293 FNGQFLFDRPMHV-KMDDKSVPHEDYRSHDSKA 324
Score = 126 (49.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 292 MFNGQFLFDRPMHV 305
Score = 120 (47.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G M++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 449 LSGPMGSGMRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 506
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 507 CGTVRFDSPESAEKACRIMNGIKISGREIDV 537
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 160 TMN--KYD 165
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 133 (51.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 251 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 310
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 311 FNGQFLFDRPMHV-KMDDKSVPHEDFR 336
Score = 126 (49.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 250 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 309
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 310 MFNGQFLFDRPMHV 323
Score = 122 (48.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 116 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
G AMKE + +G ++++NL + +KLKE FS+ G + ++ + +G SKG G
Sbjct: 524 GPMGGAMKERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCG 581
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYV 204
V F +PE A +A MNG I + + V
Sbjct: 582 TVRFDSPESAEKACRIMNGIKISGREIDV 610
Score = 91 (37.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 118 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 177
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 178 TMN--KYD 183
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 172 (65.6 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 57/196 (29%), Positives = 90/196 (45%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100
++DLK IF ++G I V++D G K F+ + D A KA AL+ +K
Sbjct: 21 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG--- 77
Query: 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 160
+ + + + E +G+ D+ L++ LG DE ++++F FGTI
Sbjct: 78 MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVRKMFEPFGTIDE 124
Query: 161 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 216
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 125 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 184
Query: 217 ---LQAQFSQMRPVAM 229
+ Q P+A+
Sbjct: 185 MQQVATQLGMFSPIAL 200
Score = 135 (52.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 167
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 360 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 89 LNG 91
+NG
Sbjct: 441 MNG 443
Score = 116 (45.9 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L + TDED++K+F +GTI V+R DG SK FV F+ +A A+ L+
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 157
Query: 91 GKK 93
+
Sbjct: 158 SSR 160
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 58/196 (29%), Positives = 90/196 (45%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100
++DLK IF ++G I V++D G K F+ + D A KA AL+ +K
Sbjct: 22 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG--- 78
Query: 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 160
+ + + + E +G D+ L++ LG DE ++++F FGTI
Sbjct: 79 MNRPIQVKPADSESRG----------DR----KLFVGMLGKQQTDEDVRKMFEPFGTIDE 124
Query: 161 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 216
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 125 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 184
Query: 217 LQ---AQFSQMRPVAM 229
+Q Q P+A+
Sbjct: 185 MQQVATQLGMFSPIAL 200
Score = 135 (52.6 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 167
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 361 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 417
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 418 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 464
Score = 131 (51.2 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 382 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 441
Query: 89 LNG 91
+NG
Sbjct: 442 MNG 444
Score = 116 (45.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L + TDED++K+F +GTI V+R DG SK FV F+ +A A+ L+
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 157
Query: 91 GKK 93
+
Sbjct: 158 SSR 160
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 137 (53.3 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV NLD + LK++FG GT+ A V D DGKS+ G V FE +A +A+ N
Sbjct: 214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
Query: 91 GKKFDDREWYVGKAQKKS 108
G+ DR+ +V K KS
Sbjct: 274 GQMLFDRQMHV-KMDDKS 290
Score = 130 (50.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+F GT+ V D G S+G G V F P EA +A++
Sbjct: 211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAIS 270
Query: 191 EMNGKMIVSKPLYV 204
NG+M+ + ++V
Sbjct: 271 MFNGQMLFDRQMHV 284
Score = 115 (45.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G ++++NL + +KLKE FS G + ++ + +G SKG G V F +PE A +A
Sbjct: 479 GCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACR 537
Query: 191 EMNGKMI 197
MNG I
Sbjct: 538 LMNGTKI 544
Score = 97 (39.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 17 QERETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGF 73
+ER A K T N VF+ N+ + +K + E G +T + +DG+GKS+ G
Sbjct: 67 KERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGV 126
Query: 74 VNFENADDAAKAVEA-----LNGKKFDDREWYVGK-AQKKSEREQELKG 116
V F++ + KA+E LNG+ + +E G+ A++ +R + G
Sbjct: 127 VEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARRVLQRSGRMYG 175
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 197 (74.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 55/189 (29%), Positives = 100/189 (52%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V LD ++E L ++F + G + + V +D + +GF+ + + +DA A++ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA + K+++D G NL+I NL +D++ L
Sbjct: 87 NMIKLHGKPIRVNKASQD---------------KKSLDV--GANLFIGNLDPDVDEKLLY 129
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I S K+MRDP +G S+G GF+++ + E + A+ M G+ + ++ + V+ A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 208 QRKEERRAR 216
+K+ + R
Sbjct: 190 YKKDTKGER 198
Score = 123 (48.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I S +MRD D G S+ FGF+++++ + + A+E
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
++ G+ +R+ V A KK +
Sbjct: 173 SMTGQYLSNRQITVSYAYKKDTK 195
Score = 40 (19.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 15/54 (27%), Positives = 18/54 (33%)
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
PH + G P + P GSM PVP+ P V Q P
Sbjct: 219 PHTLFAMGPPSSAP---QVNGLPRPFANGSMQPVPIPAPRQPPPPPPQVYQTQP 269
Score = 39 (18.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 313 TQQPLPI-MPHQMPP 326
+ QP+PI P Q PP
Sbjct: 245 SMQPVPIPAPRQPPP 259
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 165 (63.1 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 44/164 (26%), Positives = 83/164 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 86
+F+KNL+ TT+E LK +F + G + S + + G S FGFV + + A KA+
Sbjct: 692 LFIKNLNFDTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKAL 751
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ L G D + V + +++ + G+ + + + D ++++ D
Sbjct: 752 KQLQGHVVDGHKLEV-RISERATKSALNSGRHKHSPRRQTDT----KIWVRVCPFQGDSR 806
Query: 147 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 188
+LKE+F+ FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 807 ELKEIFNTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDAKRA 850
Score = 150 (57.9 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 39/127 (30%), Positives = 69/127 (54%)
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
E G++ DR + A+ + E E+E E+ +E++ G L+IKNL +E
Sbjct: 653 ETPEGEQPTDRAAHDASAKMEEEEEEE-----EEEEEESLP---GCTLFIKNLNFDTTEE 704
Query: 147 KLKELFSEFGTITSCKVMR--DPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
LK +FS+ G + SC + + + +G +S G GFV + PE+A +AL ++ G ++ L
Sbjct: 705 TLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKL 764
Query: 203 YVAVAQR 209
V +++R
Sbjct: 765 EVRISER 771
Score = 140 (54.3 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 44/161 (27%), Positives = 81/161 (50%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 112
++R+ G + FV+F + ++ KA+ E + G+ F +R V KA K+ +
Sbjct: 285 IVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNIPVAKAPLKNGAKP 344
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 171
+G+ +E D L+++NL + +E L++LFS +G ++ D +
Sbjct: 345 -WQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKP 403
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
KG FV F PE A +A AE++G++ + L+V + K+E
Sbjct: 404 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 444
Score = 106 (42.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 89 LNGKKFDD 96
N K F D
Sbjct: 62 FN-KSFID 68
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
+F+ + + ++DLK +F ++G I V++D G K F+ + + A KA AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+ +K Q K + E +G+ D+ L++ L +E +
Sbjct: 198 HEQK--TLPGMTRPIQVKPA-DSESRGE---------DR----KLFVGMLNKQQTEEDVY 241
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
LF +G I C V+R P G SKG FV FST EA A++ ++G
Sbjct: 242 RLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 136 (52.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 188
+G NL+I +L D +L ++F FGT+ S KV D + SK GFV+F P A A
Sbjct: 510 EGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAA 569
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERR 214
+ MNG I K L V + + K+ R
Sbjct: 570 IQAMNGFQIGMKRLKVQLKRPKDASR 595
Score = 130 (50.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+F+ +L + D +L ++F +GT+ S+ V D +SKCFGFV+F+N A A++A
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 89 LNG 91
+NG
Sbjct: 573 MNG 575
Score = 116 (45.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L++ T+ED+ ++F YG I V+R DG SK FV F +A A+ AL+
Sbjct: 226 LFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALH 285
Query: 91 GKK 93
G +
Sbjct: 286 GSQ 288
Score = 37 (18.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 5 DKQVFVGHFLRKQERE 20
D+++FVG L KQ+ E
Sbjct: 223 DRKLFVG-MLNKQQTE 237
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 132 (51.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 73 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 132
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 133 FNGQFLFDRPMHV-KMDDKSVPHEDYR 158
Score = 126 (49.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 72 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 131
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 132 MFNGQFLFDRPMHV 145
Score = 116 (45.9 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 343 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 400
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 401 CGTVRFDSPESAEKACRIMNGIKISGREIDV 431
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMP 374
G G M V MG G+ R +S + P
Sbjct: 299 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 326
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 132 (51.5 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 283
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 284 FNGQFLFDRPMHV-KMDDKSVPHEDYR 309
Score = 126 (49.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 223 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 282
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 283 MFNGQFLFDRPMHV 296
Score = 118 (46.6 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G M++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 480 LSGPMGSGMRDRLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 537
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 538 CGTVRFESPESAEKACRIMNGIKISGREIDV 568
Score = 91 (37.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 91 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 151 TMN--KYD 156
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 132 (51.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 182 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 241
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 242 FNGQFLFDRPMHV-KMDDKSVPHEDYR 267
Score = 126 (49.4 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 181 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 240
Query: 191 EMNGKMIVSKPLYV 204
NG+ + +P++V
Sbjct: 241 MFNGQFLFDRPMHV 254
Score = 116 (45.9 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 398 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 455
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 456 CGTVRFDSPESAEKACRIMNGIKISGREIDV 486
Score = 91 (37.1 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 49 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 108
Query: 88 ALNGKKFD 95
+N K+D
Sbjct: 109 TMN--KYD 114
Score = 38 (18.4 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMP 374
G G M V MG G+ R +S + P
Sbjct: 354 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 381
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG + DR V K+ +
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
Score = 128 (50.1 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 192 MNGKMIVSKPLYVAVAQ 208
+NG + +K + V+ A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 124 (48.7 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 89 LNGKKFDDREWYVGKAQKKS 108
LNG + + V A+ S
Sbjct: 149 LNGLRLQTKTIKVSYARPSS 168
Score = 122 (48.0 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NLY+ L ++ ++L++LFS++G I + +++ D +G S+G GF+ F EA A+
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 224
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 235 LNGQKPSGAAEPITVKFANNPSQKTS--QALLSQL 267
Score = 119 (46.9 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 324 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
A +NG + + L V+ K +
Sbjct: 384 ASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 117 (46.2 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A +A++
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 89 LNGKK 93
LNG+K
Sbjct: 235 LNGQK 239
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 197 (74.4 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 54/175 (30%), Positives = 87/175 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS E K +++ + ++ +Y +
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPN--NCTVYCGGVTSG 224
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG FV FS+ E A+ A+ +NG I
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274
Score = 190 (71.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 210 K 210
K
Sbjct: 185 K 185
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 188 (71.2 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 56/188 (29%), Positives = 93/188 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 89
+++ NLDE TD L ++ + G + + + RD S FGF F + D A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K GK + + Q+ +G V+ G NL++ NL +D+ L
Sbjct: 73 NQVKL------FGKPIRVNRASQD-RG---------VNTLIGANLFVGNLDPLVDERVLY 116
Query: 150 ELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS G + +V RD +G SKG GFV++ + E A A+ MN + +++KP+ V+ A
Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAF 176
Query: 209 RKEERRAR 216
++E + R
Sbjct: 177 KREGKGER 184
Score = 113 (44.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N+FV NLD + L F G + A V RD +G+SK +GFV++++ + A A+EA
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 89 LNGKKFDDREW---YVGKAQKKSEREQEL 114
+N + ++ Y K + K ER ++
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGERHGDI 188
Score = 45 (20.9 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 319 IMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDM-GAGIPRRDASVGQPMPIT 376
+ P P G + P + + P + A S+ PVP V + GA S+ +P T
Sbjct: 204 VTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFT 263
Query: 377 A 377
A
Sbjct: 264 A 264
>UNIPROTKB|Q4VXT4 [details] [associations]
symbol:PABPC1L "HCG2019100, isoform CRA_b" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
EMBL:AL008725 EMBL:CH471077 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797
IPI:IPI00640219 SMR:Q4VXT4 STRING:Q4VXT4 Ensembl:ENST00000372824
UCSC:uc002xmw.2 HOGENOM:HOG000136546 HOVERGEN:HBG093144
Uniprot:Q4VXT4
Length = 168
Score = 178 (67.7 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 370 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
GQ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +L
Sbjct: 81 GQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLML 137
Query: 430 ESPEALKAKVAEAMEVLRSVAQQQANNP 457
ESPE+L AK+ EA+ VL+ A Q P
Sbjct: 138 ESPESLHAKIDEAVAVLQ--AHQAMEQP 163
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 172 (65.6 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 57/196 (29%), Positives = 90/196 (45%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100
++DLK IF ++G I V++D G K F+ + D A KA AL+ +K
Sbjct: 97 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG--- 153
Query: 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 160
+ + + + E +G+ D+ L++ LG DE ++++F FGTI
Sbjct: 154 MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVRKMFEPFGTIDE 200
Query: 161 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 216
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 201 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 260
Query: 217 ---LQAQFSQMRPVAM 229
+ Q P+A+
Sbjct: 261 MQQVATQLGMFSPIAL 276
Score = 132 (51.5 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSG 169
+Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D +
Sbjct: 436 QQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATN 492
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 493 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 537
Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 455 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 514
Query: 89 LNG 91
+NG
Sbjct: 515 MNG 517
Score = 116 (45.9 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L + TDED++K+F +GTI V+R DG SK FV F+ +A A+ L+
Sbjct: 174 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 233
Query: 91 GKK 93
+
Sbjct: 234 SSR 236
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 198 (74.8 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 53/176 (30%), Positives = 85/176 (48%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++FV NL +T EDL + F + G + A ++ G + G V F N+DD +A+
Sbjct: 161 NSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIRQ 219
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+G F DR+ +V Q +K + E + + +KNL S++ + L
Sbjct: 220 YDGAFFMDRKIFV--RQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQAL 277
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
K++F E G + V D G+S GSG V+F ++ RA+ + NG I L V
Sbjct: 278 KDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 333
Score = 136 (52.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 53/195 (27%), Positives = 81/195 (41%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 86
K + V VKNL S + LK IF E G + A V DGDG S G V+F + D +A+
Sbjct: 259 KTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAI 318
Query: 87 EALNGKKFDDREWYVGKAQK---KSEREQ-----ELKGQFEQAMKETVDKFQG--LN--L 134
E NG + V + S+ + + E+A K T + G N +
Sbjct: 319 EKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLI 378
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y NL S L +LF G + + ++ D G G V + ++A + +N
Sbjct: 379 YCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLNN 438
Query: 195 KMIVSKPLYVAVAQR 209
L ++ A+R
Sbjct: 439 YNYGGCDLDISYAKR 453
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 192 (72.6 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 58/197 (29%), Positives = 100/197 (50%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENA 79
T ++ + +FV L+ TTD+ L+ F +YG +T VV+++ K S+CFGFV + +
Sbjct: 2 TAQMENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSP 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
D+A A+ A D + +A + + G+ E K V K ++I L
Sbjct: 62 DEADSAMSA-RPHILDGNNVELKRAVAREDA-----GKPEALAK--VKK-----IFIGGL 108
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
D I+++ L++ FS+FG + +V+ D +G +G GFV F + A +A+ + MI
Sbjct: 109 KDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVV-LKFHMIN 167
Query: 199 SKPLYVAVAQRKEERRA 215
+ V A K+E +A
Sbjct: 168 GHKVEVKKALTKQEMQA 184
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 195 (73.7 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 51/178 (28%), Positives = 91/178 (51%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 37 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 96
Query: 88 ALNGKKFDDREWYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N K+D G+ K + + E +A++ T + G +++ NL + +
Sbjct: 97 TMN--KYD----LSGRPLNIKEDPDGE---NARRALQRTAGRL-GSTIFVANLDFKVGWK 146
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
KLKE+FS GT+ + D G S+G G V F EA +A++ NG+ + +P++V
Sbjct: 147 KLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 204
Score = 132 (51.5 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 132 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 191
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK 115
NG+ DR +V K KS ++ +
Sbjct: 192 FNGQFLFDRPMHV-KMDDKSVPHEDYR 217
Score = 116 (45.9 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 517 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 574
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G V F +PE A +A MNG I + + V
Sbjct: 575 CGTVRFDSPESAEKACRIMNGIKISGREIDV 605
Score = 38 (18.4 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMP 374
G G M V MG G+ R +S + P
Sbjct: 473 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 500
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 195 (73.7 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGD 141
+ G+ R+ W K KS E K + + E V++ N +Y +
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTS 223
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG FV F++ E A+ A+ +NG I
Sbjct: 224 GLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 188 (71.2 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 210 K 210
K
Sbjct: 185 K 185
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 195 (73.7 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGD 141
+ G+ R+ W K KS E K + + E V++ N +Y +
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTS 223
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG FV F++ E A+ A+ +NG I
Sbjct: 224 GLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 190 (71.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 210 K 210
K
Sbjct: 185 K 185
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 195 (73.7 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGD 141
+ G+ R+ W K KS E K + + E V++ N +Y +
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTS 223
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG FV F++ E A+ A+ +NG I
Sbjct: 224 GLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 190 (71.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 210 K 210
K
Sbjct: 185 K 185
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 195 (73.7 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 56/176 (31%), Positives = 88/176 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGD 141
+ G+ R+ W K KS E K + + E V++ N +Y +
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTS 223
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG FV F++ E A+ A+ +NG I
Sbjct: 224 GLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 188 (71.2 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 210 K 210
K
Sbjct: 185 K 185
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 140 (54.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 85
T + +FV NL E+ L+ F E+G + S +++ KS FGFV+ E+ + A KA
Sbjct: 14 TPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKK-KFKSNTFGFVDMEDLETANKA 72
Query: 86 VEALNGKKFDDREWYVGKAQKKS 108
V A+NG++FD ++ V A++KS
Sbjct: 73 VAAINGREFDGKQVNVEIAREKS 95
Score = 95 (38.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 125 TVDKFQGLN-LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
T D+ Q L+++N+ S DD KL E F + ++ ++ + SKG GFV F
Sbjct: 192 TADRQQSTTTLFVRNIPYSFDDVKLLETFKDCSPKSAHVIVNKHTNRSKGFGFVEFDDVA 251
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRA 215
+ L +N + S+ L V +A E R A
Sbjct: 252 NQQKGLT-LNKLSVESRELSVKIALVPEPRDA 282
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 53/175 (30%), Positives = 87/175 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS E K +++ + ++ +Y +
Sbjct: 156 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG--NCTVYCGGVTSG 213
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG F+ FS+ E A+ A+ +NG I
Sbjct: 214 LTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTTI 263
Score = 170 (64.9 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 210 K 210
K
Sbjct: 174 K 174
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 168 (64.2 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 51/191 (26%), Positives = 90/191 (47%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADD---AAKAV 86
+FV L S + L+++F + G + V+ + K+ + FG+V F +D A K +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 87 EALNGKKFD---DREWYVGKAQ--KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
G K + ++ K++ +K+E + K + + + DK L I+NL
Sbjct: 66 TTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADK--KARLIIRNLSF 123
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
++ LK +F+ +GT+ + R P G +G F+ F EA +AL N K I +
Sbjct: 124 KCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRT 183
Query: 202 LYV--AVAQRK 210
+ V AVA+ K
Sbjct: 184 VAVDWAVAKDK 194
Score = 149 (57.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
K ++ VA K + ++NL +++DLK +F YGT+ + R DGK + F F+
Sbjct: 103 KHKKAKVADKKA--RLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQ 160
Query: 76 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKG---QFEQAMKETVDK 128
F+N +A KA++ N K+ R +W V K + K + + G E+ KE+ K
Sbjct: 161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERKPKESSKK 220
Query: 129 FQGLNLYIKNLGDSIDDE 146
+ +++ D DD+
Sbjct: 221 SCRVEEQVEDDDDDEDDD 238
Score = 99 (39.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
D +G ++I+NL ++E L E+ +FG + +++ P + SKG F F T E A
Sbjct: 320 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAA 379
Query: 186 SRALA------EMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
+ LA E G + + L V +A ++E A+LQ +
Sbjct: 380 QKCLAAASPETEGGGLKLDGRQLKVDLAVTRDEA-AKLQTK 419
Score = 42 (19.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 218
R+L +M K + SKP Q K++++ Q
Sbjct: 584 RSLQKMGSKPVTSKPQKEQKEQGKDKQQKAAQ 615
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 53/175 (30%), Positives = 87/175 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS E K +++ + ++ +Y +
Sbjct: 163 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG--NCTVYCGGVTSG 220
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG F+ FS+ E A+ A+ +NG I
Sbjct: 221 LTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTTI 270
Score = 190 (71.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 120
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 210 K 210
K
Sbjct: 181 K 181
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 141 (54.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 44/168 (26%), Positives = 82/168 (48%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+ + L + T E+++ +F G I S ++RD + G+ F N A+ A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRD-KVTGQSLGY-GFVNYVREEDALRAV 100
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+ F+ + Q K+ +K + + D+ +G NLY+ + S+ +L+
Sbjct: 101 SS--FNGL-----RLQNKT-----IKVSYARPSN---DQIKGSNLYVSGIPKSMTLHELE 145
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 196
+F FG I + +++ D +G+SKG GFV F +EA A+ +NG +
Sbjct: 146 SIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 132 (51.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G L++ NL DD L +LFS+FG I + K++RD + KG FV+ S EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 191 EMNGKMIVSKPLYV 204
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 129 (50.5 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL I L + E+++ LF+ G I SCK++RD +G S G GFV + E+A RA++
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 192 MNGKMIVSKPLYVAVAQRKEER 213
NG + +K + V+ A+ ++
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQ 124
Score = 111 (44.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 85
K +N++V + +S T +L+ IF +G I ++ ++ D G SK GFV F+ D+A A
Sbjct: 126 KGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVA 185
Query: 86 VEALNG 91
++ LNG
Sbjct: 186 IKTLNG 191
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 443 MEVLRSVAQQQANNPADQLASLSL 466
M + +V+Q A PAD L + +L
Sbjct: 267 MGAITAVSQPTATLPADYLTTSAL 290
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 136 (52.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G N+++ +L D +L + F FG + S ++ RD +G +KG GFV+F+ PE A A+
Sbjct: 149 GANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIK 208
Query: 191 EMNGKMIVSKPLYVAVAQRKE---ERRARLQAQFSQMRPVAM 229
M+G + K L V + + +E + Q Q + +P ++
Sbjct: 209 GMHGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTPAQPYSV 250
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFV +L TD +L + F +G + SA + RD +G++K +GFV+F N + A A++ +
Sbjct: 151 NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGM 210
Query: 90 NG 91
+G
Sbjct: 211 HG 212
Score = 98 (39.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 85
T + +F+ ++ + T+E+LK +YGTIT + + + F+ +E +A KA
Sbjct: 4 TNSSKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKA 63
Query: 86 VEALNGK 92
+EAL+ K
Sbjct: 64 IEALDYK 70
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 136 (52.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G N+++ +L D +L + F FG + S ++ RD +G +KG GFV+F+ PE A A+
Sbjct: 149 GANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIK 208
Query: 191 EMNGKMIVSKPLYVAVAQRKE---ERRARLQAQFSQMRPVAM 229
M+G + K L V + + +E + Q Q + +P ++
Sbjct: 209 GMHGFYVSGKHLKVQLKKGEEHYVQMNTPAQPQLTPAQPYSV 250
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFV +L TD +L + F +G + SA + RD +G++K +GFV+F N + A A++ +
Sbjct: 151 NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGM 210
Query: 90 NG 91
+G
Sbjct: 211 HG 212
Score = 98 (39.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 85
T + +F+ ++ + T+E+LK +YGTIT + + + F+ +E +A KA
Sbjct: 4 TNSSKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKA 63
Query: 86 VEALNGK 92
+EAL+ K
Sbjct: 64 IEALDYK 70
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 187 (70.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 56/191 (29%), Positives = 89/191 (46%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N +FV+NL T+E L + F +YG + A V RD G SK FGF+ FE + A KA E
Sbjct: 73 NGIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEAAQKACEE 132
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N F W+ G+ + R + K AM + ++ +LYI N+ D L
Sbjct: 133 ANNT-F----WH-GRRINVAPRIKASKPGNRDAMNQE-ERTPTSSLYIGNIPYESTDAAL 185
Query: 149 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LF + + ++ D S G +G F E A++A+ ++ ++ + L V +
Sbjct: 186 NNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYS 245
Query: 208 QRKEERRARLQ 218
+ R R+Q
Sbjct: 246 TPRVPRNERMQ 256
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 192 (72.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 53/175 (30%), Positives = 86/175 (49%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A++
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS E K ++ + ++ +Y +
Sbjct: 156 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPS--NCTVYCGGVTSG 213
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ ++ +++ FS FG I +V D KG FV F++ E A+ A+ +NG I
Sbjct: 214 LTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 263
Score = 169 (64.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 210 K 210
K
Sbjct: 174 K 174
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 198 (74.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 64/201 (31%), Positives = 96/201 (47%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY-GTITSAVVMRDG-DGKSKCFG 72
R+ + E K V V NLD + D+ + F E G + ++D GKSK
Sbjct: 473 RRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVA 532
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-G 131
+V F + KA+ A NG +R + +Q +E+ + K A + +D
Sbjct: 533 YVEFYTQEAVIKALAA-NGMMLKNRPIKIQSSQ--AEKNRAAKA----AKHQPIDPNDIP 585
Query: 132 LNLYIKNL-G--DSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
L LYI L G +I +++LK+LF+ FG I ++ RDP +G SKG GF+ F EA
Sbjct: 586 LKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIE 645
Query: 188 ALAEMNGKMIVSKPLYVAVAQ 208
AL MNG + + + V AQ
Sbjct: 646 ALTVMNGMEVAGREIKVGYAQ 666
Score = 139 (54.0 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 37/118 (31%), Positives = 66/118 (55%)
Query: 103 KAQKKSEREQELKGQFEQAMKETVD--KFQGLNLYIKNLGDSIDDEKLKELFSEF-GTIT 159
+ +++ ERE+ K + E+ +KE ++ K L + + NL D+ + E FSE G +
Sbjct: 456 RKERELERERREKIREERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVR 515
Query: 160 SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
+ ++D SG SKG +V F T E +ALA NG M+ ++P+ + +Q ++ R A+
Sbjct: 516 DIQCIKDQRSGKSKGVAYVEFYTQEAVIKALAA-NGMMLKNRPIKIQSSQAEKNRAAK 572
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 198 (74.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 64/201 (31%), Positives = 96/201 (47%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY-GTITSAVVMRDG-DGKSKCFG 72
R+ + E K V V NLD + D+ + F E G + ++D GKSK
Sbjct: 473 RRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVA 532
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-G 131
+V F + KA+ A NG +R + +Q +E+ + K A + +D
Sbjct: 533 YVEFYTQEAVIKALAA-NGMMLKNRPIKIQSSQ--AEKNRAAKA----AKHQPIDPNDIP 585
Query: 132 LNLYIKNL-G--DSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
L LYI L G +I +++LK+LF+ FG I ++ RDP +G SKG GF+ F EA
Sbjct: 586 LKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIE 645
Query: 188 ALAEMNGKMIVSKPLYVAVAQ 208
AL MNG + + + V AQ
Sbjct: 646 ALTVMNGMEVAGREIKVGYAQ 666
Score = 139 (54.0 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 37/118 (31%), Positives = 66/118 (55%)
Query: 103 KAQKKSEREQELKGQFEQAMKETVD--KFQGLNLYIKNLGDSIDDEKLKELFSEF-GTIT 159
+ +++ ERE+ K + E+ +KE ++ K L + + NL D+ + E FSE G +
Sbjct: 456 RKERELERERREKIREERRLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVR 515
Query: 160 SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
+ ++D SG SKG +V F T E +ALA NG M+ ++P+ + +Q ++ R A+
Sbjct: 516 DIQCIKDQRSGKSKGVAYVEFYTQEAVIKALAA-NGMMLKNRPIKIQSSQAEKNRAAK 572
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 36/122 (29%), Positives = 61/122 (50%)
Query: 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
A K R +LK ++ E +D+ L++ L ++ ++++F FGTI C +
Sbjct: 31 AIKLMNRALQLKPAENESRSEHLDR----KLFVGMLSKQQTEDDVRQIFHPFGTIEECTI 86
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRARLQAQ 220
+R P G SKG FV F + +EA A+ ++G + S L V A ++ER+ R Q
Sbjct: 87 LRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQ 146
Query: 221 FS 222
+
Sbjct: 147 MA 148
Score = 128 (50.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 188
+G NL+I +L D +L ++F FG + S KV D + SK GFV+F P A A
Sbjct: 335 EGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAA 394
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERR 214
+ MNG I K L V + + K+ R
Sbjct: 395 IQAMNGFQIGMKRLKVQLKRPKDASR 420
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+F+ +L + D +L ++F +G + S+ V D +SKCFGFV+F+N A A++A
Sbjct: 338 NLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQA 397
Query: 89 LNG 91
+NG
Sbjct: 398 MNG 400
Score = 111 (44.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L + T++D+++IF +GTI ++R DG SK FV F + +A A+ L+
Sbjct: 57 LFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLH 116
Query: 91 GKK 93
G +
Sbjct: 117 GSQ 119
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 186 (70.5 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 52/195 (26%), Positives = 87/195 (44%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL + L ++F G + V+ D G+S+ FGFV + + A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---------QGLNLYIKNLG 140
NG + D R V +RE + + + G +Y+ NL
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+DD L+ LFSE G + +V+ D SG SKG GFV + + +E A+ ++G +
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 200 KPLYVAVAQRKEERR 214
+ + V+ A+ + RR
Sbjct: 273 RQIRVSEAEARPPRR 287
Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N V+V NL D L+ +F E G + A V+ D D G+SK FGFV ++++ + A++
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQ 112
+L+G D R+ V +A+ + R Q
Sbjct: 264 SLDGADLDGRQIRVSEAEARPPRRQ 288
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 171 (65.3 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 89
+FV L+ TT+E L+++F +YG + VV++D + K S+ FGFV FEN +DA A+ A+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKS-EREQELKG 116
NGK D R+ V +A K S +R +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSNDRRGGYRG 95
Score = 124 (48.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +E L+++FS++G + V++D S S+G GFV F PE+A A+ M
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
NGK + + + V A + R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSNDR 89
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 193 (73.0 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 53/193 (27%), Positives = 93/193 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
+FV+ L ++L F + G + A +++D G+SK G+V F++ A A++ L
Sbjct: 176 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ-L 234
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
G+K + + + + Q + K + F LY+ N+ SID+ L+
Sbjct: 235 TGQKLLGIP-IIAQLTEAEKNRQARNSEASSGNKHSAP-FH--RLYVGNIHFSIDENDLQ 290
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+F FG + ++ +D +G S+G GFV F P +A AL +MNG + + + V +
Sbjct: 291 SVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGND 350
Query: 210 K--EERRARLQAQ 220
K E R Q+Q
Sbjct: 351 KFTPENTQRTQSQ 363
Score = 128 (50.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
F+ ++V N+ S + DL+ +F +G + + +D G+S+ +GFV F + + A +A+E
Sbjct: 272 FHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALE 331
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 131
+NG R VG K E + Q + A + FQG
Sbjct: 332 KMNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSN---FQG 372
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 188 (71.2 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 50/174 (28%), Positives = 90/174 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L + +D++ F +G I+ A V++D GKSK +GF++F N DA A++
Sbjct: 98 HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQ 157
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAM--KETVDKFQGLN--LYIKNLGDSI 143
+NG+ R+ A +K S + +G + + +E +++ N +Y + +
Sbjct: 158 MNGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGL 217
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
D+ +++ FS FG I +V + KG FV F + E A+ A+ +NG I
Sbjct: 218 SDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFDSHEGAAHAIVSVNGTCI 266
Score = 169 (64.5 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NL T+ + ++F + G S ++ D G + FV F AA A+ A+N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G+K ++ V A S ++ K+T + F ++++ +L I + ++
Sbjct: 70 GRKILGKDMKVNWASTPSSQK-----------KDTSNHF---HVFVGDLSPEISTDDVRA 115
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I+ +V++D +G SKG GF++F +A A+ +MNG+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR 175
Query: 210 K 210
K
Sbjct: 176 K 176
Score = 115 (45.5 bits), Expect = 0.00071, P = 0.00071
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+D+ Q LY+ NL + + + ++FS+ G SCK++ D +G + FV F A
Sbjct: 3 MDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTG-NDPYCFVEFYENRHA 61
Query: 186 SRALAEMNGKMIVSKPLYV 204
+ ALA MNG+ I+ K + V
Sbjct: 62 AAALAAMNGRKILGKDMKV 80
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 190 (71.9 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 89
+FV L TT + K FG+YG IT +V+M+D G+ + FGFV + ++ K ++
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-- 101
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
D +GK + E+K + + D F+ +++ + S+DD++ K
Sbjct: 102 ------DNHIIIGK-------QVEIKRTIPRGSMSSND-FKTKKIFVGGIPSSVDDDEFK 147
Query: 150 ELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMN 193
E F +FG + ++MRD S G S+G GFV + + + LA+ N
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN 192
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 129 (50.5 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 188
+G NL+I +L D +L ++F FG + S KV D + SK GFV+F P A A
Sbjct: 274 EGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQAA 333
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERR 214
+ MNG I K L V + + K+ R
Sbjct: 334 IQAMNGFQIGMKRLKVQLKRPKDANR 359
Score = 127 (49.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
L++ L ++ ++ LF FG I C ++R P G SKG FV +S+ EA A+ ++
Sbjct: 11 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 70
Query: 194 GKMIV---SKPLYVAVAQRKEERRAR-LQAQFSQM 224
G + S L V A +ER R +Q QM
Sbjct: 71 GSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQM 105
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+F+ +L + D +L ++F +G + S+ V D +SKCFGFV+F+N A A++A
Sbjct: 277 NLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 336
Query: 89 LNG 91
+NG
Sbjct: 337 MNG 339
Score = 105 (42.0 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L++ +++D++++F +G I ++R DG SK FV + + +A A+ AL+
Sbjct: 11 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 70
Query: 91 GKK 93
G +
Sbjct: 71 GSQ 73
Score = 38 (18.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 5 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDEST 40
D+++FVG L KQ+ E ++ F F N++E T
Sbjct: 8 DRKLFVG-MLNKQQSED-DVRRLFE-AF-GNIEECT 39
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 146 (56.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 57/207 (27%), Positives = 88/207 (42%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEY---GTITSAVVMRDGDGK---SKCFGFVNFENA 79
T+ N + VKNL TTDE LKK F + G I S +++ + S +GFV F++
Sbjct: 599 TESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSV 658
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
+ A L G D + + K R ++ G+ K L++KN+
Sbjct: 659 ETATSVYRDLQGTVLDGHALILRFCENK--RSDKV-GKDSNKDKPCT------KLHVKNI 709
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+L++LFS FG I S ++ + G G FV F T +EA A +
Sbjct: 710 AFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYG 769
Query: 200 KPLYVAVAQ---RKEERRARLQAQFSQ 223
+ L + A E R R A+F +
Sbjct: 770 RHLVLEWANDDNSMEAIRKRSAAKFDE 796
Score = 128 (50.1 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+ + VKNL + ++ L+ F + G IT A +MR DGKS+ FGF+ F +A +A +A++
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 89 LN 90
N
Sbjct: 62 FN 63
Score = 119 (46.9 bits), Expect = 0.00092, P = 0.00092
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
+KNL + +++L++ FS+ G IT K+MR G S+ GF+ F + +EA +A+ N
Sbjct: 6 VKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNT 65
Query: 196 MIVSKPLYVAVAQRKEERRA 215
+ + + V +A + + A
Sbjct: 66 YLGTSLIIVEIAHKVGDENA 85
Score = 116 (45.9 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-LYIKNLGDSIDDEKLKELFSEFGTIT 159
VGK E E G+ Q K D L+++NL + +E+L E FS FG I+
Sbjct: 262 VGKDDDGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKIS 321
Query: 160 SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
++ D + S+G ++ + PE A+RA+ E++ + L++ A+ +E
Sbjct: 322 EVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRE 374
Score = 91 (37.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 21/85 (24%), Positives = 48/85 (56%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 89
+FV+NL + T+E+L + F +G I+ ++ D + K S+ ++ + + AA+A+E L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 90 NGKKFDDREWYVGKAQKKSEREQEL 114
+ F R ++ A+ + ++++
Sbjct: 356 DNSSFQGRLLHILPAKHRETSDKQV 380
Score = 78 (32.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
L +KNL + +++L ++F +FG++ K++ P+ K F P EA AL M
Sbjct: 490 LLVKNLPFASTEKELAQMFGKFGSLD--KIILPPT---KTMALAVFLEPAEARAALKGMA 544
Query: 194 GKMIVSKPLYV 204
K PLY+
Sbjct: 545 YKRYKDAPLYL 555
Score = 48 (22.0 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 103 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
KA+K S+ E+ K + A + D + KNL DS D + ++
Sbjct: 179 KAKKSSDTEKTKKSKVVAASDDVSDMEYFKSRIKKNLSDSESDNESED 226
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 193 (73.0 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 51/183 (27%), Positives = 91/183 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV+++ T E+L + F ++ + AV++ D + KS+ FGFV+F DD A+
Sbjct: 35 LFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKSRGFGFVSFTLDDDCLTALVESR 94
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD-EKLK 149
KF DR V A+++ + QE + E++ E ++K + L I+NL S ++LK
Sbjct: 95 KTKFKDRLLRVDVAKRRDRKPQEGNERQEKSHVEPIEKRRA-RLIIRNLPWSCKKPDELK 153
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++FS++G + + + G G FV A +A+ G I + + V A
Sbjct: 154 KIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGLKIDGREVAVDFAVE 213
Query: 210 KEE 212
K +
Sbjct: 214 KSK 216
Score = 129 (50.5 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 16 KQERETVA-IKTKFNNVFVKNLDESTTDED-LKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
+QE+ V I+ + + ++NL S D LKKIF +YG + A + + G+ F F
Sbjct: 121 RQEKSHVEPIEKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAF 180
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM-KETVDKFQGL 132
V + A KAVE G K D RE V A +KS+ EQ + E+ E+ ++ +
Sbjct: 181 VIMKKNSAAEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVEEEEDNESSEEEEEA 240
Query: 133 NLYIKNLGDSIDDEK 147
+ K+ D +++K
Sbjct: 241 DSTNKDENDEEEEDK 255
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 193 (73.0 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 51/183 (27%), Positives = 91/183 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV+++ T E+L + F ++ + AV++ D + KS+ FGFV+F DD A+
Sbjct: 35 LFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERKSRGFGFVSFTLDDDCLTALVESR 94
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD-EKLK 149
KF DR V A+++ + QE + E++ E ++K + L I+NL S ++LK
Sbjct: 95 KTKFKDRLLRVDVAKRRDRKPQEGNERQEKSHVEPIEKRRA-RLIIRNLPWSCKKPDELK 153
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++FS++G + + + G G FV A +A+ G I + + V A
Sbjct: 154 KIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGLKIDGREVAVDFAVE 213
Query: 210 KEE 212
K +
Sbjct: 214 KSK 216
Score = 129 (50.5 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 16 KQERETVA-IKTKFNNVFVKNLDESTTDED-LKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
+QE+ V I+ + + ++NL S D LKKIF +YG + A + + G+ F F
Sbjct: 121 RQEKSHVEPIEKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAF 180
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM-KETVDKFQGL 132
V + A KAVE G K D RE V A +KS+ EQ + E+ E+ ++ +
Sbjct: 181 VIMKKNSAAEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVEEEEDNESSEEEEEA 240
Query: 133 NLYIKNLGDSIDDEK 147
+ K+ D +++K
Sbjct: 241 DSTNKDENDEEEEDK 255
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 193 (73.0 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 58/198 (29%), Positives = 96/198 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 89
+FV L S E L+++F + G + V+ + K+ + FG+V F +D +A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM---KETVDKFQGL-----NLYIKNLGD 141
F+ + V A+KK + + KG+ E + KE K + L I+NL
Sbjct: 66 T--TFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLSF 123
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
++ LK +FS+FGTI + R P G +G FV F EA +AL MN K I +
Sbjct: 124 KCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 202 LYVAVAQRKEERRARLQA 219
+ V A K++ ++ A
Sbjct: 184 VAVDWAVAKDKYKSTQSA 201
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/122 (30%), Positives = 63/122 (51%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
K ++ VA K + ++NL +++DLK +F ++GTI + R DGK + F FV
Sbjct: 103 KPKKAKVADKKA--RLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQ 160
Query: 76 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 131
F+N +A KA++ +N K+ R +W V K + KS + + +E K + Q
Sbjct: 161 FKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKSTQSASIP-DYEGEEKRPEPEHQE 219
Query: 132 LN 133
L+
Sbjct: 220 LD 221
>UNIPROTKB|B4QRJ0 [details] [associations]
symbol:shep "Protein alan shepard" species:7240 "Drosophila
simulans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000363 OrthoDB:EOG4C8687 RefSeq:XP_002083716.1
ProteinModelPortal:B4QRJ0 EnsemblMetazoa:FBtr0213117 GeneID:6736860
KEGG:dsi:Dsim_GD13207 FlyBase:FBgn0184928 Uniprot:B4QRJ0
Length = 576
Score = 126 (49.4 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++++ L + TTD+DL + +YGTI S + D +KC+GFV+FE A AV+ L
Sbjct: 232 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT-TNKCYGFVDFEQPAFAECAVKGL 290
Query: 90 NGK 92
GK
Sbjct: 291 QGK 293
Score = 114 (45.2 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L+G+ QA + NLYI NL + L+ + S++G + S +++RD SKG
Sbjct: 290 LQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKG 349
Query: 174 SGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
GF + E+ + + NG I PL V A
Sbjct: 350 VGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFA 385
Score = 39 (18.8 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 349 GSMLP--VPVDMGAGIPRRDASVGQP------MPITALSTALANASPEQQRT 392
G+M+P + +G + R P MP+T A ASP++ T
Sbjct: 516 GTMMPQLATLQIGNSVSHRSPYYAPPPTIIPTMPMTDSEQASTAASPDEAYT 567
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 168 (64.2 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 48/153 (31%), Positives = 81/153 (52%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G+ + +GFV F + +DA A++ +N K + V KA A +
Sbjct: 8 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS---------------AHNKN 52
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPE 183
+D G N++I NL ID++ L + FS FG I K+MRDP +G SKG F+ F++ +
Sbjct: 53 LDV--GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 110
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
+ A+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 111 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 143
Score = 125 (49.1 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I +MRD D G SK + F+NF + D + A+E
Sbjct: 58 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 117
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 118 AMNGQYLCNRPITVSYAFKKDSK 140
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 168 (64.2 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 89
+F+ L+ T +E L+++F +YG I+ VV++D + K S+ FGFV FEN DDA A+ A+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 90 NGKKFDDREWYVGKAQKKS-EREQELKG 116
NGK D R+ V +A K S +R +G
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGDRRGGYRG 94
Score = 123 (48.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L+I L ++E L+++FS++G I+ V++D + S+G GFV F P++A A+ M
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 193 NGKMIVSKPLYVAVAQRKE-ERR 214
NGK + + + V A + +RR
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGDRR 89
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 187 (70.9 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 51/175 (29%), Positives = 88/175 (50%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+VFV +L T +D++ F +G I+ A V++D GKSK +GFV+F N DA A+
Sbjct: 116 HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 89 LNGKKFDDRE----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDS 142
+ G+ R+ W K KS ++ K +F++ + ++ Q +Y +
Sbjct: 176 MGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSP--QNCTVYCGGIQSG 233
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ + +++ FS FG I +V + KG F+ FS+ E A+ A+ +NG I
Sbjct: 234 LTEHLMRQTFSPFGQIMEIRVFPE-----KGYSFIRFSSHESAAHAIVSVNGTTI 283
Score = 137 (53.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 41/139 (29%), Positives = 70/139 (50%)
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 115
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
++++ +L I + ++ F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 116 HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 192 MNGKMIVSKPLYVAVAQRK 210
M G+ + + + A RK
Sbjct: 176 MGGQWLGGRQIRTNWATRK 194
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 188 (71.2 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 56/194 (28%), Positives = 95/194 (48%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAA 83
+ K V+V NLDE + + ++ + G + + + D ++ + +GFV F+ + A
Sbjct: 8 QNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESAD 67
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
A ALNG + + V KA ++ E+ G L++ NL +
Sbjct: 68 YAARALNGIRVFGKVIRVNKASADKQKTAEI----------------GAELFVNNLDPQV 111
Query: 144 DDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
D++ L + FS FG +T V+RD + ISKG GFV F + E + A MNG+ ++SK +
Sbjct: 112 DEKILFDTFSRFGQLVTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQI 171
Query: 203 YVAVAQRKEERRAR 216
V A +K+ + R
Sbjct: 172 TVEYAYKKDGKGER 185
Score = 39 (18.8 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 266 GFGYQQQLVPGMRPA-GAPMP 285
GFG PG P GAPMP
Sbjct: 362 GFGAPP---PGFAPPNGAPMP 379
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 183 (69.5 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 58/187 (31%), Positives = 93/187 (49%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVV-MRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+FV L+ TTDE L+ F +YG +T VV M +S+CFGFV + + ++A A+ A
Sbjct: 8 LFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA- 66
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
D + +A + + G+ E K V K +++ L D I+DE L+
Sbjct: 67 RPHIVDGNNVDLKRAVAREDA-----GKPEMLAK--VKK-----IFVGGLKDDIEDEHLQ 114
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS+FG I +V+ D +G +G GFV F + A +A+ M I + V A
Sbjct: 115 DYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV-MKFHSICGHKVEVKKAL 173
Query: 209 RKEERRA 215
K+E ++
Sbjct: 174 TKQEMQS 180
Score = 116 (45.9 bits), Expect = 0.00043, P = 0.00043
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+++ V + + +++ + K +FV L + DE L+ F ++G I A V+
Sbjct: 70 IVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVI 129
Query: 62 RDGD-GKSKCFGFVNFENADDAAKAV 86
D D GK + FGFV F++ D A KAV
Sbjct: 130 TDKDTGKKRGFGFVYFDDNDSADKAV 155
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 191 (72.3 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 55/185 (29%), Positives = 91/185 (49%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
+ +FV+NL T +DL F + G I AVV+ + + G+++ +GFV F +DA +A +
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD-E 146
L KK R + A + + E+ +A+K+T+ + L I+NL SI +
Sbjct: 65 ELKNKKLHGRILRLDFATPR--KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L+ FS+FG + K+ G G FV + A A+ +NG I +P+ V
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
Query: 207 AQRKE 211
A K+
Sbjct: 183 AVSKD 187
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 188 (71.2 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NLD S +++ L +F G + S ++R+ G + F+ + N A A+ A+N
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIRE-PGNDP-YAFIEYSNYQAATTALTAMN 66
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
+ F ++E V A + K + ++++ +L I+ E L+E
Sbjct: 67 KRLFLEKEIKVNWATSPGNQP-----------KTDISSHH--HIFVGDLSPEIETETLRE 113
Query: 151 LFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I++C+++RDP + SKG FV+F EA A+ MNG+ I S+ + + R
Sbjct: 114 AFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
Query: 210 K 210
K
Sbjct: 174 K 174
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+D+ Q LY+ NL S+ ++ L LFS G + SCK++R+P + F+ +S + A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPG--NDPYAFIEYSNYQAA 58
Query: 186 SRALAEMNGKMIVSKPLYV 204
+ AL MN ++ + K + V
Sbjct: 59 TTALTAMNKRLFLEKEIKV 77
Score = 101 (40.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVE 87
+++FV +L E L++ F +G I++ ++RD KSK + FV+F +A A++
Sbjct: 95 HHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQ 154
Query: 88 ALNGKKFDDR 97
A+NG+ R
Sbjct: 155 AMNGQWIGSR 164
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL-----AEMNGKMI 197
I D+ + + F +FG I +V +D KG F+ F T E A+ A+ +E++G ++
Sbjct: 233 ISDDLMHKHFVQFGPIQDVRVFKD-----KGFSFIKFVTKEAAAHAIEHTHNSEVHGNLV 287
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
+FV L T ++ L+++F +YG I+ VV++D + +S+ FGFV FEN DDA A+ A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 90 NGKKFDDREWYVGKAQKKSE-REQELKG 116
NGK D R+ V +A K S+ R + +G
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 119 (46.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
L++ L +++ L+++FS++G I+ V++D + S+G GFV F ++A A+ M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 193 NGKMIVSKPLYVAVAQRKEERRAR 216
NGK + + + V A + + R+R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 189 (71.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 55/180 (30%), Positives = 86/180 (47%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++++ L + TTD+DL + +YGTI S + D +KC+GFV+FE A AV+ L
Sbjct: 237 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKT-TNKCYGFVDFEQPAFAECAVKGL 295
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
GK + VG + A+++ D NLYI NL + L+
Sbjct: 296 QGKGVQAQMAKVG-----------IWVLHRPAIQQEQDP---TNLYIANLPPHYKETDLE 341
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVA 207
+ S++G + S +++RD SKG GF + E+ + + NG I PL V A
Sbjct: 342 AMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGGKDPLLVKFA 401
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
L++ L ++ ++ LF FG I C ++R P G SKG FV +S+ EA A+ ++
Sbjct: 3 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 62
Query: 194 GKMIV---SKPLYVAVAQRKEERRAR-LQAQFSQM 224
G + S L V A +ER R +Q QM
Sbjct: 63 GSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQM 97
Score = 125 (49.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 188
+G NL I +L D +L ++F FG + S KV D + SK GFV+F P A A
Sbjct: 268 EGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTA 327
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERR 214
+ MNG I K L V + + K+ R
Sbjct: 328 IQAMNGFQIGMKRLKVQLKRPKDANR 353
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ + +L + D +L ++F +G + S+ V D +SKCFGFV+F+N A A++A
Sbjct: 271 NLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 330
Query: 89 LNG 91
+NG
Sbjct: 331 MNG 333
Score = 105 (42.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L++ +++D++++F +G I ++R DG SK FV + + +A A+ AL+
Sbjct: 3 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 62
Query: 91 GKK 93
G +
Sbjct: 63 GSQ 65
WARNING: HSPs involving 1081 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 472 420 0.00083 118 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1331
No. of states in DFA: 596 (63 KB)
Total size of DFA: 217 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.38u 0.18s 39.56t Elapsed: 00:00:02
Total cpu time: 39.44u 0.18s 39.62t Elapsed: 00:00:02
Start: Tue May 21 07:04:00 2013 End: Tue May 21 07:04:02 2013
WARNINGS ISSUED: 2