BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012034
(472 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/472 (79%), Positives = 419/472 (88%), Gaps = 3/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VGHFLRKQ+RE KTKFNNV+VKNL ESTTDE+L FGEYGTITSA++
Sbjct: 186 MLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALI 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKS+CFGFVNFEN DDAAKAVE LNGKKFDD+EWYVGKAQKKSEREQELKG+FEQ
Sbjct: 246 MRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQ 305
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DK+ GLNLY+KNL D+I DEKLKE+F+++GTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 306 SIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFS 365
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+RAL EMNGKM KPLYVA+AQRKEERRARLQAQFSQMRPVA+ PSV PRMP+Y
Sbjct: 366 TPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLY 425
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQFLYGQ PPA++PPQAGFGYQQQLVPGMRP G PMP+FFVP+V QGQQGQR
Sbjct: 426 PPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQR 485
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
P GRRG GPVQQ QQP+P+M QM PRG YRYP GRNMQD P + AG ML VP DMG
Sbjct: 486 PVGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQVAAGGMLSVPYDMG- 544
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA VGQPMPI AL+TALANA PEQQRT+LGE+LYPLV+QLE D+AAKVTGMLLEM
Sbjct: 545 GLPMRDA-VGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEM 603
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQ EVLHL+ESP+ALKAKVAEAM+VLR+VAQQQ NPADQLASLSLN+NLVS
Sbjct: 604 DQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQT-NPADQLASLSLNDNLVS 654
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD++ D L +F + G + S V RD +S +G+VNF N DAA+A++
Sbjct: 36 SLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDV 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++R + S R+ L+ K N++IKNL +ID + L
Sbjct: 96 LNFTPLNNRSIRI----MYSHRDPSLR------------KSGTANIFIKNLDKAIDHKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG+SKG GFV F E A A+ ++NG +I K +YV
Sbjct: 140 HDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFL 199
Query: 209 RKEERRARL 217
RK++R L
Sbjct: 200 RKQDRENAL 208
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPE 183
++F +LY+ +L +++D +L +LF++ G + S +V RD + S G G+V FS P+
Sbjct: 28 NANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQ 87
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A+RAL +N + ++ + + + R R
Sbjct: 88 DAARALDVLNFTPLNNRSIRIMYSHRDPSLR 118
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/473 (79%), Positives = 414/473 (87%), Gaps = 2/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F+RKQERE+ KTKFNNV+VKNL ESTTDEDLK IFGEYG ITSAVV
Sbjct: 183 MLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVV 242
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DGDGKSKCFGFVNFENADDAA++VEALNGKKFDD+EWYVGKAQKK+ERE ELKG+FEQ
Sbjct: 243 MQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQ 302
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE VDKFQGLNLY+KNL DSI D+KL+ELFSEFGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 303 SLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFS 362
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEASRALA+MNGKM+ SKPLYVA+AQRKE+RRARLQAQFSQMRP AM PSV PRM MY
Sbjct: 363 TAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMY 422
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQ YGQ PPA+IPPQ GFGYQ QLVPGMRP APMPNFFVP+V GQ QR
Sbjct: 423 PPGAPGLGQQLFYGQGPPALIPPQPGFGYQHQLVPGMRPGAAPMPNFFVPMVQPGQPNQR 482
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
PGGRR G GPVQQTQQPLP+M QM PRG YRYP GRNM D P G ML P DM
Sbjct: 483 PGGRRSGTGPVQQTQQPLPLMQQQMLPRGRVYRYPPGRNMADVPIPGVPGGMLSAPYDM- 541
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
AG+P RDA+V QPMPI AL+TALANA P+QQRTLLGE+LYPLV+QLE + AAKVTGMLLE
Sbjct: 542 AGMPFRDAAVSQPMPIGALATALANAPPDQQRTLLGENLYPLVDQLEHEMAAKVTGMLLE 601
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLR+VAQQQANNP D++ASLSLN+ L S
Sbjct: 602 MDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQANNPTDRMASLSLNDTLTS 654
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ ++ L F +G I S + D G+SK +GFV F+N + A A + L
Sbjct: 121 NIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKL 180
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG +K ERE +K + N+Y+KNL +S DE LK
Sbjct: 181 NGMLLNDKQVYVGPFVRKQERE------------SATNKTKFNNVYVKNLLESTTDEDLK 228
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+F E+G ITS VM+D G SK GFV F ++A+R++ +NGK K YV AQ+
Sbjct: 229 NIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQK 288
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 289 KTEREVELKGRFEQ 302
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + TD L +FG+ G + S V RD +S +G+VN+ N DAA+A++
Sbjct: 33 SLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDM 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + S R+ ++ + N++IKNL +ID++ L
Sbjct: 93 LNFTPLNGKPIRI----MYSFRDPSIR------------RSGTANIFIKNLDKAIDNKAL 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG SKG GFV F E A A ++NG ++ K +YV
Sbjct: 137 YDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFV 196
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 197 RKQERES 203
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++ D L +LF + G + S +V RD S S G G+V + ++A+
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
RAL +N + KP+ + + R
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFR 110
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/473 (81%), Positives = 417/473 (88%), Gaps = 3/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VGHFLRK ER++ + K KFNNV+VKNL ESTT+EDLK IFGEYG ITSAV+
Sbjct: 188 MLLNDKQVYVGHFLRKHERDSASNK-KFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVI 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFEN D AAKAVE+LNGKK DD+EWYVGKAQKKSERE ELK QFEQ
Sbjct: 247 MRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQ 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE VDK+QG+NLYIKNL DSI DE LKELFS+FG ITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 307 SMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFS 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRALAEMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMRPVAM PSV PRMP+Y
Sbjct: 367 TPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSVGPRMPIY 426
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PG G+GQQFLYGQ PP +IPPQ GFGYQQQLVPG+RP GAPMPNFFVP+V QGQQGQR
Sbjct: 427 SPGAPGMGQQFLYGQGPPTMIPPQGGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGQQGQR 486
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
GGRRGA PVQQ QQP+P+M QM PRG YRYP GRNM D P AG ML VP DMG
Sbjct: 487 HGGRRGAVPVQQNQQPVPLMHQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMG- 545
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA+ GQP+PITAL+TALANASPE QRTLLGESLYPLV+QLE ++AAKVTGMLLEM
Sbjct: 546 GMPIRDAAAGQPVPITALATALANASPEHQRTLLGESLYPLVDQLEHESAAKVTGMLLEM 605
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLRSV AQQ ANN ADQL SLSLN+ LVS
Sbjct: 606 DQTEVLHLLESPEALKAKVAEAMEVLRSVAAQQHANNTADQLTSLSLNDGLVS 658
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 13/206 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G I S V D G+S+ +GFV F+
Sbjct: 114 HRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFD 173
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A A++ LNG +D++ YVG +K ER+ +F N+Y+K
Sbjct: 174 NEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFN-------------NVYVK 220
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S +E LK +F E+G ITS +MRD G SK GFV F + A++A+ +NGK I
Sbjct: 221 NLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKI 280
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L++QF Q
Sbjct: 281 DDKEWYVGKAQKKSERELELKSQFEQ 306
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ + DAA+A++
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDI 97
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN F+++ + + + + G N++IKNL +ID + L
Sbjct: 98 LNFTPFNNKPIRIMYSHRDPSIRKSGTG----------------NIFIKNLDKTIDHKAL 141
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG S+G GFV F E A A+ ++NG ++ K +YV
Sbjct: 142 HDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFL 201
Query: 209 RKEERRARLQAQFSQM 224
RK ER + +F+ +
Sbjct: 202 RKHERDSASNKKFNNV 217
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/472 (82%), Positives = 426/472 (90%), Gaps = 2/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG FLRKQERET KTKFNNV+VKNL ESTT+EDLK IFGE+G ITS VV
Sbjct: 169 MLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVV 228
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFENADDAA+AVEALNGKKFD++EWYVGKAQKK ERE ELKG+FEQ
Sbjct: 229 MRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQ 288
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE VDKFQG+NLYIKNL DSI D+KLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 289 SMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFS 348
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEASRAL EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMRPV+M PSV PRMPMY
Sbjct: 349 TSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMY 408
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQ YGQ PPAIIPPQAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 409 PPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQR 468
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
PGGRRGAGPVQQ QQP+P+M QM PR G YRYP GRNM D P AG ML +P DMG
Sbjct: 469 PGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVPMPGVAGGMLSIPYDMG 528
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA++GQPMPI+AL++ALANA+P+QQRT+LGESLYPLV+QLE + AAKVTGMLLE
Sbjct: 529 -GVPLRDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLE 587
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
MDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQAN+P +QLASLSLN++LV
Sbjct: 588 MDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLV 639
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DAA+A++
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 79 LNFTPLNGKPIRIMYSHRDP----------------SIRKSGTANIFIKNLDKSIDNKAL 122
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ DPSG SKG GFV F E A A+ ++NG +I K +YV
Sbjct: 123 HDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFL 182
Query: 209 RKEERRARL 217
RK+ER L
Sbjct: 183 RKQERETAL 191
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/473 (82%), Positives = 422/473 (89%), Gaps = 4/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VGHFLRKQ+R+ KFNNVFVKNL ESTTDE+LK IF E+G ITSAVV
Sbjct: 163 MLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVV 222
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFE+ADDAAKAVEALNGKK D EWYVGKAQKKSERE ELKG+FEQ
Sbjct: 223 MRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQ 282
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKETVDKFQGLNLYIKNL DSI+DEKLKELFS+FG ITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 283 SMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFS 342
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRALAEMNGKM++SKPLYVA+AQRKEERRARLQAQFSQMRPV M PSV RMPMY
Sbjct: 343 TPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPMY 402
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQFLYGQ PPA++PPQAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 403 PPGAPGMGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQR 462
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRG GPVQQTQQP+P+M QM PRG YRYP GRNM D P AG ML VP DMG
Sbjct: 463 PGGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMG- 521
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA+ QPMPITAL+TALANA+PEQQRT+LGESLYP+V+QLE D+AAKVTGMLLEM
Sbjct: 522 GMPIRDAA--QPMPITALATALANATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEM 579
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLR+V AQQQ NN ADQL SLSLN+NLVS
Sbjct: 580 DQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNQADQLGSLSLNDNLVS 632
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 81
AI+ +++V +LD + TD L +F + G + S V RD +S +G+VN+ N D
Sbjct: 6 AIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQD 65
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
AA+A++ LN +++ + + + ++ K N++IKNL
Sbjct: 66 AARALDVLNFTPLNNKPIRIMYSHRDP----------------SIRKSGMANIFIKNLDK 109
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
ID + L + FS FG I SCKV D SG SKG GFV F + E A A+ ++NG ++ K
Sbjct: 110 GIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQ 169
Query: 202 LYVAVAQRKEERRARL 217
+YV RK++R L
Sbjct: 170 VYVGHFLRKQDRDGAL 185
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/472 (80%), Positives = 421/472 (89%), Gaps = 3/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VGHFLRKQ+RE KTKFNNV+VKNL ESTTDE+L K FGEYGTITSAV+
Sbjct: 184 MLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVI 243
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKS+CFGFVNFEN DDAAKAVE LNGKK DD+EWYVGKAQKKSEREQELKG+FEQ
Sbjct: 244 MRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQ 303
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE+ DK+QG+NLY+KNL D+I DEKLKE+F+E+GTITSCKVMRDP+GI +GSGFVAFS
Sbjct: 304 SIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFS 363
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL EMNGKMI KPLYVA+AQRKE+RRARLQAQFSQMRPVA+ PSV PRMP+Y
Sbjct: 364 TPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLY 423
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQFLYGQ PPA++PPQAGFGYQQQLVPGMRP G PMP+FFVP+V QGQQGQR
Sbjct: 424 PPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVQQGQQGQR 483
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRG GPVQQ QQP+P+M QM PRG YRYP GRNMQD P AG M+ VP DMG
Sbjct: 484 PGGRRGTGPVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDMG- 542
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA VGQPMPI AL+TALANA PEQQRT+LGE+LYPLV+QLE DAAAKVTGMLLEM
Sbjct: 543 GLPIRDA-VGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEM 601
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQ EVLHL+ESP+ALKAKVAEAM+VLR+VAQQQ NPADQLASLSLN+NLVS
Sbjct: 602 DQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQT-NPADQLASLSLNDNLVS 652
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+++ D L +F + + S V RD +S +G+VNF N DAA+A++
Sbjct: 34 SLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDV 93
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++R + S R+ L+ K N++IKNL +ID + L
Sbjct: 94 LNFTPLNNRPIRI----MYSHRDPSLR------------KSGTANIFIKNLDKAIDHKAL 137
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG+SKG GFV F + E A A+ ++NG +I K +YV
Sbjct: 138 HDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFL 197
Query: 209 RKEERRARL 217
RK++R L
Sbjct: 198 RKQDRENAL 206
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
++F +LY+ +L +++D +L +LF++ + S +V RD + S G G+V FS P++A
Sbjct: 28 NQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVNFSNPQDA 87
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+RAL +N + ++P+ + + R R
Sbjct: 88 ARALDVLNFTPLNNRPIRIMYSHRDPSLR 116
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/472 (80%), Positives = 420/472 (88%), Gaps = 3/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VGHFLRKQERE+ TKF NV+VKNL ESTTD++LKK+FGE+G ITSAVV
Sbjct: 189 MLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVV 248
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGF+NFE A+DAAKAVE+LNGKKFDD+EWYVGKAQKKSEREQELK +FEQ
Sbjct: 249 MRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQ 308
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE VDK+QGLNLY+KNL D+IDDEKLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 309 TAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFS 368
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEASRAL+EMNGKMIVSKPLYVA+AQRKEERRA+LQAQFSQ+RPVAM PS+ PRMP+Y
Sbjct: 369 TSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQLRPVAMPPSLAPRMPIY 428
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPA+IPPQAGFGYQQQLVPGMRP GAPMPNFF+P+V QGQQGQR
Sbjct: 429 PPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPNFFMPLVQQGQQGQR 488
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRGAGPVQQTQQP+P+M QM PRG YRYP GRN + P G ML VP DMG
Sbjct: 489 PGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEGPMPGVPGGMLSVPYDMGG 548
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+P RD+++GQPMPI+ L++ALANA PEQQRT+LGESLYPLV+QLE + AAKVTGMLLEM
Sbjct: 549 MLP-RDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEM 607
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLR+V QQ NPADQLASLSLN+NLVS
Sbjct: 608 DQTEVLHLLESPEALKAKVAEAMEVLRNV--QQTTNPADQLASLSLNDNLVS 657
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 16/221 (7%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+N K + V + R+ K+ N+F+KNLD+S ++ L F +G I S +
Sbjct: 104 VNGKSIRVMY----SHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIAT 159
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D +G+SK +GFV ++N + A A++ LNG +D++ YVG +K ERE
Sbjct: 160 DSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERES---------- 209
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+ KFQ N+Y+KNL +S D++LK++F EFG ITS VMRD G SK GF+ F T
Sbjct: 210 TTGMTKFQ--NVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETA 267
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
E+A++A+ +NGK K YV AQ+K ER L+++F Q
Sbjct: 268 EDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQ 308
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + TD L +F + G + S V RD +S +G+VN+ N +DA++A+E
Sbjct: 39 SLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEM 98
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + V + + T+ K N++IKNL SID++ L
Sbjct: 99 LNFTPVNGKSIRVMYSHRDP----------------TLRKSGSANIFIKNLDKSIDNKAL 142
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D +G SKG GFV + E A A+ ++NG ++ K +YV
Sbjct: 143 HDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFL 202
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 203 RKQERES 209
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/470 (78%), Positives = 407/470 (86%), Gaps = 2/470 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQERE+ A K KFNNVFVKNL ESTTD++LK +FGE+GTITSAVV
Sbjct: 179 MLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVV 238
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFENADDAA+AVEALNGKKFDD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 239 MRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQ 298
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DK+QG NLY+KNL DS+ D+KLKELFS FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 299 SMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 358
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TP+EASRAL EMNGKM+VSKPLYV +AQRKE+RRARLQAQF+QMRPV M PSV PR+PMY
Sbjct: 359 TPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMY 418
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ Y Q PPAIIP Q GFGYQQQLVPGMRP AP+PNFFVP+V QGQQGQR
Sbjct: 419 PPGGPGIGQQIFYAQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQR 478
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
G R G VQQ+QQP+P+MP QM PRG YRYP GR M D AG M VP D+G
Sbjct: 479 -PGGRRTGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGMPDVSMPGVAGGMFSVPYDVG- 536
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDAS+ Q +P+ AL+TALANASPEQQRT+LGE+LYPLVEQLE D AAKVTGMLLEM
Sbjct: 537 GMPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEM 596
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENL 470
DQTEVLHLLESPEALKAKVAEAM+VLR+VAQQQA ADQLASLSLN+NL
Sbjct: 597 DQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTADQLASLSLNDNL 646
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD + + L F +G I S V D G+SK +GFV F+
Sbjct: 105 HRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFD 164
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A KA+E LNG +D++ YVG +K ERE T DK + N+++K
Sbjct: 165 NEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERE------------STADKAKFNNVFVK 212
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S D++LK +F EFGTITS VMRD G SK GFV F ++A+RA+ +NGK
Sbjct: 213 NLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKF 272
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 273 DDKEWYVGKAQKKSERENELKQRFEQ 298
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VNF N DAA+A++
Sbjct: 29 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDV 88
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++R + + + + +G N++IKNL +ID + L
Sbjct: 89 LNFTPLNNRPIRIMYSHRDPSIRKSGQG----------------NIFIKNLDRAIDHKAL 132
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV F E A +A+ ++NG ++ K +YV
Sbjct: 133 HDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFL 192
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 193 RKQERES 199
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++ D +L +LF++ G + S +V RD S S G G+V FS P++A+
Sbjct: 24 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 83
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
RAL +N + ++P+ + + R R
Sbjct: 84 RALDVLNFTPLNNRPIRIMYSHRDPSIR 111
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/472 (78%), Positives = 410/472 (86%), Gaps = 2/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQERE+ A K KFNNVFVKNL ESTTD++LK FGE+GTITSAVV
Sbjct: 182 MLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVV 241
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFENADDAA+AVEALNGK FDD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 242 MRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQ 301
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DK+QG NLY+KNL DSI DEKLKELFS FGTITSCKVMRDP+G+S+GSGFVAFS
Sbjct: 302 SMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFS 361
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL EMNGKM+VSKPLYV +AQRKE+RRARLQAQF+QMRPV M PSV PR+PMY
Sbjct: 362 TPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMY 421
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ Y Q PPAIIP Q GFGYQQQL+PGMRP AP+PNFFVP+V QGQQGQR
Sbjct: 422 PPGGPGIGQQLFYSQGPPAIIPSQPGFGYQQQLMPGMRPGAAPVPNFFVPMVQQGQQGQR 481
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRR VQQ+QQP+P+MP QM PRG YRYP GR + D P AG M VP D+G
Sbjct: 482 PGGRRPGA-VQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPIPGVAGGMFSVPYDVG- 539
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDAS+ Q +P+ AL+TALANASPEQQRT+LGE+LYPLVEQLE D AAKVTGMLLEM
Sbjct: 540 GMPLRDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEM 599
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAM+VLR+VAQQQA ADQLASLSLN+NLVS
Sbjct: 600 DQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTADQLASLSLNDNLVS 651
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD + + L F +G I S V D G+SK +GFV F+
Sbjct: 108 HRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFD 167
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A KA+E LNG +D++ YVG +K ERE DK + N+++K
Sbjct: 168 NEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERE------------SAADKAKFNNVFVK 215
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S D++LK F EFGTITS VMRD G SK GFV F ++A+RA+ +NGK
Sbjct: 216 NLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNF 275
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 276 DDKEWYVGKAQKKSERENELKQRFEQ 301
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VNF N DAA+A++
Sbjct: 32 SLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDV 91
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++R + + + + +G N++IKNL +ID + L
Sbjct: 92 LNFTPLNNRPIRIMYSHRDPSIRKSGQG----------------NIFIKNLDRAIDHKAL 135
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV F E A +A+ ++NG ++ K +YV
Sbjct: 136 HDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFL 195
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 196 RKQERES 202
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++ D +L +LF++ G + S +V RD S S G G+V FS P++A+
Sbjct: 27 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAA 86
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
RAL +N + ++P+ + + R R
Sbjct: 87 RALDVLNFTPLNNRPIRIMYSHRDPSIR 114
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/473 (82%), Positives = 422/473 (89%), Gaps = 4/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG+FLRKQER++ KFNN++VKNL ESTTDEDLK IF E+G ITSAVV
Sbjct: 182 MLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVV 241
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFEN DDAAKAVEALNGKKFDD+EWYVGKAQKKSERE ELKG+FEQ
Sbjct: 242 MRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQ 301
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++ E+V+K+Q +NLYIKNL DS++DEKLKELFS+FGTITSCKVM DPSGIS+GSGFVAFS
Sbjct: 302 SL-ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFS 360
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRALAE+NGKM+VSKPLYVA AQRKEERRARLQAQFSQMRPVAM PSV PRM MY
Sbjct: 361 TPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMAPSVAPRMQMY 420
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQFLYGQ PPA+I PQAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 421 PPGAPGLGQQFLYGQGPPAMI-PQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQR 479
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRG GPVQQTQQP+P+M QM PRG YRYP GRNM D P AG ML VP DMG
Sbjct: 480 PGGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMGV 539
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+P RDA+ GQPMPITAL+TALANA+PEQQRT+LGE LYPLV+QLE D+AAKVTGMLLEM
Sbjct: 540 -MPIRDAAGGQPMPITALATALANATPEQQRTMLGEGLYPLVDQLEHDSAAKVTGMLLEM 598
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLR+V AQQQ NNPAD LASLSLNENLVS
Sbjct: 599 DQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNPADHLASLSLNENLVS 651
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 17/196 (8%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 81
AI+ +++V +LD + TD L +F + G + S V RD +S +G+VN+ N D
Sbjct: 25 AIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQD 84
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
AA+A++ LN +++ + + + ++ K N++IKNL
Sbjct: 85 AARALDVLNFTPLNNKPLRIMYSHRDP----------------SIRKSGMANIFIKNLDK 128
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ID + L + FS FG I SCKV D SG SKG GFV F + E A A+ ++NG +I K
Sbjct: 129 TIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQ 188
Query: 202 LYVAVAQRKEERRARL 217
+YV RK+ER + L
Sbjct: 189 VYVGNFLRKQERDSAL 204
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/472 (79%), Positives = 419/472 (88%), Gaps = 3/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VGHFLRKQERE+ TKF NV+VKNL ESTTD+ LKK+FGE+G ITSAVV
Sbjct: 11 MLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFGEFGNITSAVV 70
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGF+NFE A+DAAKAVE+LNGKKFDD+EWYVGKAQKKSEREQELK +FEQ
Sbjct: 71 MRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQ 130
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE VDK+QGLNLY+KNL D+IDDEKLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 131 TAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFS 190
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEASRAL+EMNGKMIVSKPLYVA+AQRKEERRA+L+AQFSQ+RPVAM PS+ PRMP+Y
Sbjct: 191 TSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLRPVAMPPSLAPRMPIY 250
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPA+IPPQAGFGYQQQLVPGMRP GAPMPNFF+P+V QGQQGQR
Sbjct: 251 PPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPNFFMPLVQQGQQGQR 310
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRGAGPVQQTQQP+P+M QM PRG YRYP GRN + P G ML VP DMG
Sbjct: 311 PGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEGPMPGVPGGMLSVPYDMGG 370
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+P RD+++GQPMPI+ L++ALANA PEQQRT+LGESLYPLV+QLE + AAKVTGMLLEM
Sbjct: 371 MLP-RDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEM 429
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLR+V QQ NPADQLASLSLN+NLVS
Sbjct: 430 DQTEVLHLLESPEALKAKVAEAMEVLRNV--QQTTNPADQLASLSLNDNLVS 479
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 12/142 (8%)
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
A A++ LNG +D++ YVG +K ERE + KFQ N+Y+KNL +
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERES----------TTGMTKFQ--NVYVKNLSE 48
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
S D+ LK++F EFG ITS VMRD G SK GF+ F T E+A++A+ +NGK K
Sbjct: 49 STTDDGLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKE 108
Query: 202 LYVAVAQRKEERRARLQAQFSQ 223
YV AQ+K ER L+++F Q
Sbjct: 109 WYVGKAQKKSEREQELKSKFEQ 130
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/473 (75%), Positives = 404/473 (85%), Gaps = 11/473 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQERE+ K FNNV+VKNL E+TT+EDLKKIFGEYGTITSAVV
Sbjct: 180 MLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVV 239
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDG+GKS+CFGFVNFEN DDAA++VEALNGK FD++EWYVGKAQKKSERE ELKG+FEQ
Sbjct: 240 MRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQ 299
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KETVDKFQGLNLY+KNL DSI D+KLKELFSEFGTITSCKVMRDP+G+S+GSGFVAFS
Sbjct: 300 TLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFS 359
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEASRAL EMNGKM+VSKPLYVA+AQRKEERRARLQAQ+SQ+RP AM P + PRMP+Y
Sbjct: 360 TAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRP-AMAPPIGPRMPIY 418
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+G Q YGQ PPAI+PPQ GFGYQQQLVPGMR PNFFVP+V GQQ QR
Sbjct: 419 PPGTPGIGHQLFYGQGPPAIVPPQPGFGYQQQLVPGMR------PNFFVPMVQPGQQAQR 472
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
P GRR GAG V Q QQPLP+M QM PRG YRYP GR+M D P G MLPVP DMG
Sbjct: 473 PSGRRSGAGAV-QPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPYDMG 531
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RD + QP+ AL+TALANA PEQQRTLLGE+LYPLV+QLE + AAKVTGMLLE
Sbjct: 532 -GMPFRDGAFSQPVQTGALATALANAMPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLE 590
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPE+LKAKVAEAMEVLR+V QQQ N+P D++A+LSLN++LVS
Sbjct: 591 MDQTEVLHLLESPESLKAKVAEAMEVLRTV-QQQVNSPTDRMATLSLNDSLVS 642
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ N+++KNLD++ ++ L F +G+I S V D G+S +GFV F+N
Sbjct: 107 RDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDN 166
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ YVG +K ERE +DK N+Y+KN
Sbjct: 167 EESAKNAIDKLNGMLLNDKQVYVGPFLRKQERE------------SAIDKATFNNVYVKN 214
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ++ +E LK++F E+GTITS VMRD +G S+ GFV F P++A++++ +NGK
Sbjct: 215 LSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFD 274
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 275 EKEWYVGKAQKKSEREVELKGRFEQ 299
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 18/197 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+++ T+ L +F ++G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 30 SLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEV 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + T+ K N+YIKNL +ID++ L
Sbjct: 90 LNFTPVNGKPIRIMYSYRDP----------------TIRKSGTGNIYIKNLDKAIDNKAL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG+I SCKV D G S G GFV F E A A+ ++NG ++ K +YV
Sbjct: 134 HDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFL 193
Query: 209 RKEERRARL-QAQFSQM 224
RK+ER + + +A F+ +
Sbjct: 194 RKQERESAIDKATFNNV 210
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEE 184
V++F +LY+ +L ++ + +L +LF++ G + S +V RD S S G G+V ++ +
Sbjct: 23 VNQFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHD 82
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQR 209
A++A+ +N + KP+ + + R
Sbjct: 83 AAQAIEVLNFTPVNGKPIRIMYSYR 107
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/472 (77%), Positives = 416/472 (88%), Gaps = 4/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQ+R++ KTKFNN++VKNL +ST+++DL+K FGEYGTITS VV
Sbjct: 191 MLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVV 250
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFEN +DAAKAV+ALNGKKFDD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 251 MRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQ 310
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KE VDK+QG+NLY+KNL D+IDDEKLKELFSE+GTITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 311 TVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFS 370
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL EMNGKMIVSKPLYVA+AQRKEERRARLQAQFSQMRPVAM PS+ PRMPMY
Sbjct: 371 TPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMY 430
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PG G+GQQ YGQAPPA+I PQAGFGYQQQLVPGMRP G PMPNFF+P+V QGQQGQR
Sbjct: 431 SPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQR 490
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRGAGP QQTQQP+P+MP Q+ PRG YR+P GRN+ D G MLPVP +MG
Sbjct: 491 PGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPGRNVGDVTMPGVGGGMLPVPYNMGG 550
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+P R+A++GQPMPITAL++ALANA +QQRT+LGE+LYPLV+QLE D AAKVTGMLLEM
Sbjct: 551 MLP-REAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEM 609
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESP+ALKAKVAEAM+VLR+V+Q N ADQL LSLNENLVS
Sbjct: 610 DQTEVLHLLESPDALKAKVAEAMDVLRNVSQP---NVADQLGGLSLNENLVS 658
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 121/205 (59%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ N+F+KNLD+S + L + F +GTI S + D G+SK +GFV +++
Sbjct: 118 RDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDS 177
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ YVG +K +R+ E+ + KF N+Y+KN
Sbjct: 178 EEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEM----------SKTKFN--NIYVKN 225
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L DS ++ L++ F E+GTITS VMRD G SK GFV F PE+A++A+ +NGK
Sbjct: 226 LSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFD 285
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+++F Q
Sbjct: 286 DKEWYVGKAQKKSEREVELKSRFEQ 310
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD+S TD L +F + G + S V RD G+S +G+VN+ N DA +A++
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ V +++ + G N++IKNL SID + L
Sbjct: 101 LNFTPLNNKTIRVSVSRRDPTDRKSGAG----------------NIFIKNLDKSIDIKAL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCK+ D SG SKG GFV + + E A A+ ++NG ++ K +YV V
Sbjct: 145 HETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFL 204
Query: 209 RKEERRARL 217
RK++R + +
Sbjct: 205 RKQDRDSEM 213
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 186
+F +LY+ +L S+ D +L +LF++ G + S +V RD S G S G G+V +S ++A+
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
RA+ +N + +K + V+V++R R
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRRDPTDR 123
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/473 (77%), Positives = 409/473 (86%), Gaps = 11/473 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QERE+ KTKFNNV+VKNL E+TT+EDLKKIFGEYG ITSAVV
Sbjct: 180 MLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVV 239
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKS+CFGFVNFEN DDAA++VEALNGK FD++EWYVGKAQKKSERE ELKGQFEQ
Sbjct: 240 MRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQ 299
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KETVDKF+GLNLY+KNL DSI D+KLKELFSEFGTITSCKVMRDP+G+SKGSGFVA+S
Sbjct: 300 TLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYS 359
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMIVSKPLYVA+AQRKEERRARLQAQFSQMRP AM P+V PRMPMY
Sbjct: 360 TAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRP-AMAPAVGPRMPMY 418
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
P G G+GQQ YGQ PPAI+PPQ GFGYQQQLVPGMR PNFFVP+V GQQ QR
Sbjct: 419 PHGTPGIGQQLFYGQGPPAIVPPQPGFGYQQQLVPGMR------PNFFVPMVQPGQQAQR 472
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
P GRR GAGPV Q QQPLP+M QM PRG YRYP GR+M D P G MLPVP DMG
Sbjct: 473 PSGRRSGAGPV-QPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPYDMG 531
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RD + QPM AL+TALANA+PEQQRTLLGE+LYPLV+QLE + AAKVTGMLLE
Sbjct: 532 -GMPFRDGAFSQPMQTGALATALANATPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLE 590
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPE+L+AKVAEAMEVLR+V QQQAN+P +++A+LSLNENLVS
Sbjct: 591 MDQTEVLHLLESPESLEAKVAEAMEVLRTV-QQQANSPTNRMATLSLNENLVS 642
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ N+++KNLD++ ++ L F +G I S V D G+S +GFV F+N
Sbjct: 107 RDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDN 166
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ YVG ++ ERE DK + N+Y+KN
Sbjct: 167 EESAKNAIDKLNGMLLNDKQVYVGPFLRRQERE------------SGTDKTKFNNVYVKN 214
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ++ +E LK++F E+G ITS VMRD G S+ GFV F P++A+R++ +NGK
Sbjct: 215 LSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFD 274
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ QF Q
Sbjct: 275 EKEWYVGKAQKKSEREVELKGQFEQ 299
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+++ T+ L +F + G I S V RD +S +G+VN+ N DAA+A+E
Sbjct: 30 SLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEV 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + T+ K N+YIKNL +ID++ L
Sbjct: 90 LNFTPVNGKPIRIMYSYRDP----------------TIRKSGAGNIYIKNLDKAIDNKAL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D +G S G GFV F E A A+ ++NG ++ K +YV
Sbjct: 134 HDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFL 193
Query: 209 RKEERRA 215
R++ER +
Sbjct: 194 RRQERES 200
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
++F +LY+ +L ++ + +L +LF++ G I S +V RD S S G G+V ++ +A
Sbjct: 24 NQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDA 83
Query: 186 SRALAEMNGKMIVSKPLYVAVAQR 209
++AL +N + KP+ + + R
Sbjct: 84 AQALEVLNFTPVNGKPIRIMYSYR 107
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/472 (80%), Positives = 414/472 (87%), Gaps = 21/472 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG FLRKQERET KTKFNNV+VKNL ESTT+EDLK IFGE+G ITS VV
Sbjct: 169 MLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVV 228
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFENADDAA+AVEALNGKKFD++EWYVGKAQKK ERE ELKG+FEQ
Sbjct: 229 MRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQ 288
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE VDKFQG+NLYIKNL DSI D+KLKELFSEFGTITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 289 SMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFS 348
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEASRAL EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMRPV+M PSV PRMPMY
Sbjct: 349 TSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMY 408
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQ YGQ PPAIIPPQAGFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 409 PPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQR 468
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
PGGRRGAGPVQQ QQP+P+M QM PR G YRYP GRNM D
Sbjct: 469 PGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPD------------------ 510
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
+P DA++GQPMPI+AL++ALANA+P+QQRT+LGESLYPLV+QLE + AAKVTGMLLE
Sbjct: 511 --VPMPDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLE 568
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
MDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQAN+P +QLASLSLN++LV
Sbjct: 569 MDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLV 620
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DAA+A++
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 79 LNFTPLNGKPIRIMYSHRDP----------------SIRKSGTANIFIKNLDKSIDNKAL 122
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ DPSG SKG GFV F E A A+ ++NG +I K +YV
Sbjct: 123 HDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFL 182
Query: 209 RKEERRARL 217
RK+ER L
Sbjct: 183 RKQERETAL 191
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/472 (79%), Positives = 412/472 (87%), Gaps = 2/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQERE+ KT+FNNV+VKNL E+TT+EDLKK FGEYGTITSAVV
Sbjct: 175 MLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGK+KCFGFVNFENADDAA AVEALNGKKFDD+EW+VGKAQKK+ERE ELK +FEQ
Sbjct: 235 MRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DKFQG NLYIKNL DSI D++LK+LFS FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 295 SMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEAS+AL EMNGKM+VSKPLYVA+AQRKE+RRARLQAQFSQ+RPVAM PSV PRMPMY
Sbjct: 355 TPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAPSVAPRMPMY 414
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG GLGQQ YGQAPPAIIPPQ GFGYQQQLVPGMRP GAPMPNFFVP+V Q Q +
Sbjct: 415 PPGGPGLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQ-GQQGQ 473
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
G R AG QQ+QQP+P+M QM PRG YRYP GR + D P AG ML VP DM +
Sbjct: 474 RPGGRRAGAAQQSQQPVPLMQQQMVPRGRVYRYPPGRGIPDVPMTGVAGGMLSVPYDM-S 532
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA++ QP+PI AL++ALANASPEQQRT+LGE+LYPLVEQLE DAAAKVTGMLLEM
Sbjct: 533 GMPMRDAALSQPIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEM 592
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLRSV QQQA ADQLASLSLN+NLVS
Sbjct: 593 DQTEVLHLLESPEALKAKVAEAMEVLRSVQQQQAGGAADQLASLSLNDNLVS 644
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD+ + L F +G I S V D G+SK +GFV F+
Sbjct: 101 HRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFD 160
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A KA+E LNG +D++ YVG +K ERE +DK + N+Y+K
Sbjct: 161 NEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERE------------SAIDKTRFNNVYVK 208
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E LK+ F E+GTITS VMRD G +K GFV F ++A+ A+ +NGK
Sbjct: 209 NLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKF 268
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K +V AQ+K ER L+ +F Q
Sbjct: 269 DDKEWFVGKAQKKNERENELKVRFEQ 294
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + TD L +F + G + S V RD +S +G+VN+ + DAA+A++
Sbjct: 25 SLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDM 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + +V K N++IKNL ID + L
Sbjct: 85 LNFTPLNGSPIRIMYSHRDP----------------SVRKSGSGNIFIKNLDKGIDHKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV F E A +A+ ++NG ++ K +YV
Sbjct: 129 HDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFL 188
Query: 209 RKEERRARL 217
RK+ER + +
Sbjct: 189 RKQERESAI 197
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/473 (76%), Positives = 408/473 (86%), Gaps = 4/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG FLRKQERE+V+ KTKFNNVFVKNL E+T++EDLK +FGE+G ITS VV
Sbjct: 180 MLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV 239
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDG+GKSKCFGFVNFENADDAA++VEALNGKK D +EWYVGKAQKKSERE ELK +FEQ
Sbjct: 240 MRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DK+QG NLY+KNL DSIDD+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 300 SVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFS 359
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-MPM 239
+PEEA+RALAEMNG+MIVSKPLYVA+AQRKE+RRARLQAQFSQM+P+AM SV PR MPM
Sbjct: 360 SPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPM 419
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG G+GQQ YGQAPP II Q GFGYQQQL+PGMRP G PMPNFFVP+V QGQQGQ
Sbjct: 420 YPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQ 479
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
R G R AG +QQTQQP+P+M QM PRG YRYP GR + D P AG M VP +MG
Sbjct: 480 R-SGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMG 538
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA QP+P+ AL++ALANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLE
Sbjct: 539 -GMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLE 597
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLRSVA QQ+ N ADQLASLSL +NL S
Sbjct: 598 MDQTEVLHLLESPEALKAKVAEAMEVLRSVA-QQSGNAADQLASLSLTDNLDS 649
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G+I S V D G+SK FGFV F+
Sbjct: 106 HRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFD 165
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E LNG +D++ +VG +K ERE +K + N+++K
Sbjct: 166 TEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERE------------SVSEKTKFNNVFVK 213
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E LK +F EFG ITS VMRD G SK GFV F ++A+R++ +NGK +
Sbjct: 214 NLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKV 273
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+++F Q
Sbjct: 274 DGKEWYVGKAQKKSEREVELKSRFEQ 299
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DA++A++
Sbjct: 30 SLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDV 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + V + + +V K N++IKNL +ID + L
Sbjct: 90 LNFTPLNGNPIRVMYSHRDP----------------SVRKSGSGNIFIKNLDKAIDHKAL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG+I SCKV D SG SKG GFV F T E A +A+ ++NG ++ K ++V
Sbjct: 134 HDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFL 193
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 194 RKQERES 200
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/473 (73%), Positives = 399/473 (84%), Gaps = 2/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F+RK ER+ KT+F NVFVKNL EST +E+L+KIFGE+G ITS V
Sbjct: 178 MLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAV 237
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D DGKS+CFGFVNFENA+DAA+AVEALNG K D+++W+VG+AQKKSERE ELK +FEQ
Sbjct: 238 MKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQ 297
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ KE VDK QGLNLYIKNL DSI DEKLKELFS +GTITSCKVMRDPSG+SKGSGFVAFS
Sbjct: 298 SAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFS 357
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
PEEASRAL+EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMRP+AM SV PRMPMY
Sbjct: 358 NPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMY 417
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQQGQ 299
PPG GLGQQ YGQ PA++PPQAGFGYQQQLVPGMRP G PMPNFF+P+V Q +
Sbjct: 418 PPGGPGLGQQIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQR 477
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
G R GA P+QQ QQP+P+M QM PRG YRYP GR + D F G M +P DMG
Sbjct: 478 PGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMG 537
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA + QP+P+ AL+TALAN+SP +QRT+LGE+LYPLVEQLE + AAKVTGMLLE
Sbjct: 538 -GMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLE 596
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLR+V+QQQ++NPADQLASLSLN+ LVS
Sbjct: 597 MDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPADQLASLSLNDGLVS 649
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ ++ N+F+KNLD++ + L F +G I S V D G+SK +GFV +++
Sbjct: 105 RDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDS 164
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A KA+E LNG +D++ YVG +K ER+ VDK + N+++KN
Sbjct: 165 EEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERDM------------AVDKTRFTNVFVKN 212
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S +E+L+++F EFG ITS VM+D G S+ GFV F E+A+RA+ +NG +
Sbjct: 213 LSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLD 272
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
+K +V AQ+K ER L+ +F Q
Sbjct: 273 NKDWFVGRAQKKSEREMELKHRFEQ 297
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + T+ + N++IKNL +ID + L
Sbjct: 88 LNFTPLHGKPIRIMYSNRDP----------------TIRRSGNGNIFIKNLDKAIDHKAL 131
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV + + E A +A+ ++NG ++ K +YV
Sbjct: 132 HDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFV 191
Query: 209 RKEER 213
RK ER
Sbjct: 192 RKHER 196
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/473 (76%), Positives = 407/473 (86%), Gaps = 4/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG FLRKQERE+V+ KTKFNNVFVKNL E+T++EDLK +FGE+G ITS VV
Sbjct: 180 MLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV 239
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDG+GKSKCFGFVNFENADDAA++VEALNGKK D +EWYVGKAQKKSERE ELK +FEQ
Sbjct: 240 MRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DK+QG NLY+KNL DSIDD+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 300 SVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFS 359
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-MPM 239
+PEEA+RALAEMNG+MIVSKPLYVA+AQRKE+R ARLQAQFSQM+P+AM SV PR MPM
Sbjct: 360 SPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPM 419
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG G+GQQ YGQAPP II Q GFGYQQQL+PGMRP G PMPNFFVP+V QGQQGQ
Sbjct: 420 YPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQ 479
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
R G R AG +QQTQQP+P+M QM PRG YRYP GR + D P AG M VP +MG
Sbjct: 480 R-SGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMG 538
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA QP+P+ AL++ALANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLE
Sbjct: 539 -GMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLE 597
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLRSVA QQ+ N ADQLASLSL +NL S
Sbjct: 598 MDQTEVLHLLESPEALKAKVAEAMEVLRSVA-QQSGNAADQLASLSLTDNLDS 649
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G+I S V D G+SK FGFV F+
Sbjct: 106 HRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFD 165
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E LNG +D++ +VG +K ERE +K + N+++K
Sbjct: 166 TEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERE------------SVSEKTKFNNVFVK 213
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E LK +F EFG ITS VMRD G SK GFV F ++A+R++ +NGK +
Sbjct: 214 NLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKV 273
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+++F Q
Sbjct: 274 DGKEWYVGKAQKKSEREVELKSRFEQ 299
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DA++A++
Sbjct: 30 SLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDV 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + V + + +V K N++IKNL +ID + L
Sbjct: 90 LNFTPLNGNPIRVMYSHRDP----------------SVRKSGSGNIFIKNLDKAIDHKAL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG+I SCKV D SG SKG GFV F T E A +A+ ++NG ++ K ++V
Sbjct: 134 HDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFL 193
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 194 RKQERES 200
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/460 (77%), Positives = 396/460 (86%), Gaps = 2/460 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQERE+ + KFNNVFVKNL ESTTD++LKK FGE+GTITSAVV
Sbjct: 185 MLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVV 244
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFE+ DDAA+AVEALNGKK DD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 245 MRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQ 304
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DK+QG NLY+KNL DSI DEKLKELFS +GTITSCKVMRDP+G+S+GSGFVAFS
Sbjct: 305 SMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFS 364
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL EMNGKM+ SKPLYV +AQRKE+RRARLQAQF+QMRPV+M PSV PRMPMY
Sbjct: 365 TPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMY 424
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPAIIP Q GFGYQQQLVPGMRP GAP+PNFFVP+V QGQQGQR
Sbjct: 425 PPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQR 484
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
G R G VQQ+QQP+P+MP QM PRG YRYP GR M D P AG M VP D+G
Sbjct: 485 -PGGRRGGGVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVG- 542
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDAS+ Q +PI AL++ LANASPEQQRT+LGE+LYPLVEQLE D AAKVTGMLLEM
Sbjct: 543 GMPIRDASLSQQIPIGALASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEM 602
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
DQTEVLHLLESPEALKAKVAEAM+VLR+VAQQQA ADQ
Sbjct: 603 DQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQ 642
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G I S V DG G+SK +GFV F+
Sbjct: 111 HRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFD 170
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E LNG +D++ YVG +K ERE T D+ + N+++K
Sbjct: 171 TEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERE------------STGDRAKFNNVFVK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S D++LK+ F EFGTITS VMRD G SK GFV F + ++A+RA+ +NGK I
Sbjct: 219 NLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKI 278
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 279 DDKEWYVGKAQKKSEREHELKIKFEQ 304
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DAA+A++
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++R + + + + +G N++IKNL +ID + L
Sbjct: 95 LNFTPLNNRPIRIMYSHRDPSIRKSGQG----------------NIFIKNLDKAIDHKAL 138
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV F T E A +A+ ++NG ++ K +YV
Sbjct: 139 HDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFL 198
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 199 RKQERES 205
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L ++ D +L +LF++ G + S +V RD + S G G+V +S P++A+R
Sbjct: 31 FVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAAR 90
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N + ++P+ + + R
Sbjct: 91 ALDVLNFTPLNNRPIRIMYSHR 112
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/473 (72%), Positives = 397/473 (83%), Gaps = 8/473 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F+RKQER+ KT+F NVFVKNL EST +E+L+KIFGE+GTITS V
Sbjct: 178 MLLNDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAV 237
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D DGKS+CFGFVNFENA+DAA+AVEALNG K D+++W+VG+AQKKSERE ELK +FEQ
Sbjct: 238 MKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQ 297
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ +E VDK QGLNLY+KNL DSI D+KLKELFS +GTITSCKVMRDPSG+SKGSGFVAFS
Sbjct: 298 SAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFS 357
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL+EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMRP+AM SV PRMPMY
Sbjct: 358 TPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMY 417
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQQGQ 299
PPG GLGQQ YGQ PPA++PPQAGFGYQQQLVPGMRP G PMPNFF+P+V Q +
Sbjct: 418 PPGGPGLGQQIFYGQPPPAMLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQR 477
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
G R GA P+QQ QQP+P+M QM PRG YRYP GR + D F G M +P D+G
Sbjct: 478 PGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPDGAFPGVGGGMFSIPYDIG 537
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
I QP+P+ AL+TALANASP +QRT+LGE+LYPLVEQLE + AAKVTGMLLE
Sbjct: 538 GRIV-------QPIPVGALATALANASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLE 590
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLR+V+QQQ++NPADQLASLSLN+ LVS
Sbjct: 591 MDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPADQLASLSLNDGLVS 643
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 120/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ ++ N+F+KNLD++ + L F +G I S V D G+SK +GFV +++
Sbjct: 105 RDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDS 164
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A KA+E LNG +D++ YVG +K ER+ VDK + N+++KN
Sbjct: 165 DEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERDM------------AVDKTRFTNVFVKN 212
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S +E+L+++F EFGTITS VM+D G S+ GFV F E+A+RA+ +NG +
Sbjct: 213 LSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLD 272
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
+K +V AQ+K ER L+ +F Q
Sbjct: 273 NKDWFVGRAQKKSEREMELKHRFEQ 297
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + T+ + N++IKNL +ID + L
Sbjct: 88 LNFTPLHGKPIRIMYSNRDP----------------TIRRSGNGNIFIKNLDKAIDHKAL 131
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV + + E A +A+ ++NG ++ K +YV
Sbjct: 132 HDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFV 191
Query: 209 RKEER 213
RK+ER
Sbjct: 192 RKQER 196
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/471 (79%), Positives = 409/471 (86%), Gaps = 3/471 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQER+T K +FNNVFVKNL E+TT+EDL K FGE+GTITS VV
Sbjct: 176 MLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVV 235
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFENA+DAAKAVEALNGKK DD+EW+VGKAQKK ERE ELK +FEQ
Sbjct: 236 MRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQ 295
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DKFQG NLYIKNL DSI DEKLKELFS FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 296 SMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 355
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL EMNGK++VSKPLYVA+AQRKE+RRARLQAQFSQMRPVAM PSV PRMPMY
Sbjct: 356 TPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGPRMPMY 415
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP GLGQQ YGQAPPAIIPPQ GFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 416 PPAGPGLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR 475
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
G R AG QQ+QQP+P+M QM PRG YRYP GR + D P AG MLPVP DMG
Sbjct: 476 -PGGRRAGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLPVPYDMG- 533
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA++ Q +P+ AL+TALANA+P+QQRT+LGE+LYPLVEQLE +AAAKVTGMLLEM
Sbjct: 534 GMPMRDAALSQSIPVGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEM 593
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
DQTEVLHLLESPEALKAKV EAMEVLR+V QQQA ADQLASLSLN+NLV
Sbjct: 594 DQTEVLHLLESPEALKAKVNEAMEVLRTV-QQQATGTADQLASLSLNDNLV 643
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G I S V D G+SK +GFV F+
Sbjct: 102 HRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFD 161
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ + A KA+E LNG +D++ YVG +K ER+ DK + N+++K
Sbjct: 162 SEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERD------------TATDKMRFNNVFVK 209
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E L + F EFGTITS VMRD G SK GFV F E+A++A+ +NGK I
Sbjct: 210 NLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKI 269
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K +V AQ+K ER L+ +F Q
Sbjct: 270 DDKEWFVGKAQKKYEREVELKQRFEQ 295
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L+ S TD L +F + G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 25 TSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + V + + T+ K N++IKNL +ID +
Sbjct: 85 MLNFTPLNGSPIRVMYSHRDP----------------TIRKSGAGNIFIKNLDKAIDHKA 128
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV DPSG SKG GFV F + E A +A+ ++NG ++ K +YV
Sbjct: 129 LHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPF 188
Query: 208 QRKEER 213
RK+ER
Sbjct: 189 LRKQER 194
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L S+ D +L +LF++ G + S +V RD S S G G+V +S P++A+R
Sbjct: 22 FVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAAR 81
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N + P+ V + R
Sbjct: 82 ALEMLNFTPLNGSPIRVMYSHR 103
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/471 (76%), Positives = 406/471 (86%), Gaps = 8/471 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQVFVGHFLRKQ+R+ V KTKFNNV+VKNL ES T++DLK FG YGTITSAV+
Sbjct: 183 MLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVL 242
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DG+SKCFGFVNFENA+DAAKAVEALNGKK DD+EWYVGKAQKKSEREQELKG+FEQ
Sbjct: 243 MRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQ 302
Query: 121 AMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+KE+V DKFQGLNLY+KNL DSI DEKLKE+FSEFGTITS K+MRDP+G+S+GSGFVAF
Sbjct: 303 TVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAF 362
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
STPEEASRAL EMNGKMIVSKPLYVAVAQRKE+RRARLQAQFSQMRPVA+ PSV PRMP+
Sbjct: 363 STPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPL 422
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG GLGQQF+YGQ PPA++PPQAGFGYQQQLVPGMRP G PMP++FVP+V QGQQGQ
Sbjct: 423 YPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQ 482
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR-NMQDFPFDMGAGSMLPVPVDM 358
RPGGRRG Q QQ + + PR YRYP GR N+QD P G M+ DM
Sbjct: 483 RPGGRRGGPGQQPPQQVPMMQQQML-PRQRVYRYPPGRSNIQDAPVQNIGGGMM--SYDM 539
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G G+P RD V PMPI AL+TALANA PEQQRT+LGE+LYPLV+QLE D+AAKVTGMLL
Sbjct: 540 G-GLPLRD--VVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLL 596
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNEN 469
EMDQ EVLHL+ESP+ALKAKVAEAMEVLR+V+QQQ N+PADQLASLSLN++
Sbjct: 597 EMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASLSLNDS 647
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 16/221 (7%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+N+K + V + R+ + K+ N+F+KNLD++ + L F +G I S +
Sbjct: 98 MNNKSIRVMY----SHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIAT 153
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
DG G+SK +GFV FE D A A++ LNG +D++ +VG +K +R+ L
Sbjct: 154 DGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL-------- 205
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+ KF N+Y+KNL +S ++ LK F +GTITS +MRD G SK GFV F
Sbjct: 206 --SKTKFN--NVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENA 261
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
E+A++A+ +NGK + K YV AQ+K ER L+ +F Q
Sbjct: 262 EDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQ 302
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
VA + +++V +L+ + D L +F + G + S V RD +S +G+VNF N
Sbjct: 24 NVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNP 83
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DAA+A++ LN +++ V + + K N++IKNL
Sbjct: 84 QDAARALDVLNFTPMNNKSIRVMYSHRDPSSR----------------KSGTANIFIKNL 127
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+ID + L + FS FG I SCK+ D SG SKG GFV F + A A+ ++NG +I
Sbjct: 128 DKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLIND 187
Query: 200 KPLYVAVAQRKEER 213
K ++V RK++R
Sbjct: 188 KQVFVGHFLRKQDR 201
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
++F +LY+ +L +++D +L +LF++ G + S +V RD + S G G+V F+ P++A
Sbjct: 27 NQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA 86
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+RAL +N + +K + V + R R
Sbjct: 87 ARALDVLNFTPMNNKSIRVMYSHRDPSSR 115
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/475 (75%), Positives = 401/475 (84%), Gaps = 16/475 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG FLRKQERE+ A KT+FNNV+VKNL E+TT++DLKKIFGE+G ITS V
Sbjct: 191 MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNF++ DDAA++VEALNGKKFDD+EWYVGKAQKK ERE ELKG+FEQ
Sbjct: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KET DKF+GLNLY+KNL DSI D+KLKELFSEFGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMR P V PRMPMY
Sbjct: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR-----PPVGPRMPMY 425
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP GLGQQ YGQ P IIPPQ GFGYQQQLVPGMR PN+FVP+V GQQ QR
Sbjct: 426 PPVAPGLGQQLFYGQG-PPIIPPQPGFGYQQQLVPGMR------PNYFVPMVQPGQQNQR 478
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
PGGRR G GP+QQ QQP+P+M +M PRG YRYP G N+ D P G MLP P D+G
Sbjct: 479 PGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIG 538
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA+ QPM AL++ALANASPEQQRTLLGE+LYPLV+QLE D AAKVTGMLLE
Sbjct: 539 -GMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE 597
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN--NPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLR+VAQQQA +P D++ASLSLN+N+VS
Sbjct: 598 MDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLSLNDNIVS 652
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ N+F+KNLD+S ++ L F +G I S V D G+S+ +GFV F+N
Sbjct: 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDN 177
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ +VG +K ERE T DK + N+Y+KN
Sbjct: 178 EESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE------------STADKTRFNNVYVKN 225
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ++ ++ LK++F EFG ITS VMRD G SK GFV F P++A+R++ +NGK
Sbjct: 226 LSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 286 DKEWYVGKAQKKYEREMELKGKFEQ 310
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G + S V RD +S +G+VN+ A +A +A++
Sbjct: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + T+ K N++IKNL SID++ L
Sbjct: 101 LNFTPLNGKPIRIMYSYRDP----------------TIRKSGAGNIFIKNLDKSIDNKAL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G S+G GFV F E A A+ ++NG ++ K ++V
Sbjct: 145 HDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204
Query: 209 RKEERRA 215
RK+ER +
Sbjct: 205 RKQERES 211
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEAS 186
+F +LY+ +L S++D +L +LF++ G + S +V RD S S G G+V ++ EA+
Sbjct: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
RAL E+N + KP+ + + R
Sbjct: 96 RALDELNFTPLNGKPIRIMYSYR 118
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/472 (71%), Positives = 383/472 (81%), Gaps = 16/472 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQVFVG FLRKQ+RE+ TKFNNVFVKNL +S T+ DL++IFGEYG ITSAVV
Sbjct: 175 MLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSK FGFVNF N DDAAKAVEALNGK FD +EWYVGKAQKKSERE ELKGQ EQ
Sbjct: 235 MRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KETVDK+ G NLYIKNL DS+ DE+L ELFSEFGTITSCKVMRDP+GIS+GSGFV+FS
Sbjct: 295 ITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
E A+RAL EMNGKM+ KPLYVA+AQRKE+RRARLQAQFSQ RP A+ P+V PRMP+Y
Sbjct: 355 IAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLY 414
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
P G +GQQFLYGQA PA I PQA FGYQQ VPGMRP GA PNF+VP+V QGQQGQR
Sbjct: 415 PLGAPAIGQQFLYGQAAPATI-PQAAFGYQQHFVPGMRPGGA--PNFYVPLVQQGQQGQR 471
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGG RG+GP+QQ QQPLP+M QM PRGH YRYP G NMQ+ G M+
Sbjct: 472 PGGHRGSGPMQQLQQPLPLMHQQMLPRGHVYRYPSGSNMQNIQLAGVPGGMVTY------ 525
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+GQ MP AL++ALANA+PEQQRT+LGE+LYPLV++LE +AAAKVTGMLLEM
Sbjct: 526 -------GIGQQMPTQALASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEM 578
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQ EVLHL+ESP+ALKAKV EAM+VL+ V QQQ+N+PADQLASLSLN+N+ S
Sbjct: 579 DQPEVLHLIESPDALKAKVVEAMDVLKKVTQQQSNSPADQLASLSLNDNVES 630
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K+ NVF+KNLD++ + L F +G I S V D G+SK GFV FE+
Sbjct: 102 RDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFES 161
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ +VG +K +RE L G KF N+++KN
Sbjct: 162 EESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGT----------KFN--NVFVKN 209
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L DS+ + L+ +F E+G ITS VMRD G SKG GFV F+ ++A++A+ +NGK
Sbjct: 210 LLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFD 269
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQM 224
K YV AQ+K ER L+ Q Q+
Sbjct: 270 GKEWYVGKAQKKSERELELKGQHEQI 295
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 96/193 (49%), Gaps = 25/193 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L D L +F + + S + RD +S +G+VNF NA DAAKA++
Sbjct: 25 SLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDV 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSID 144
LN L G+ + M D K N++IKNL +ID
Sbjct: 85 LNFTP--------------------LNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAID 124
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + FS FG I SCKV D SG SKG GFV F + E A A+ ++NG +I K ++V
Sbjct: 125 HKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFV 184
Query: 205 AVAQRKEERRARL 217
RK++R + L
Sbjct: 185 GPFLRKQDRESAL 197
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL- 189
++LY+ +L ++D +L +LF++ + S ++ RD + S G G+V FS +A++A+
Sbjct: 24 ISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAID 83
Query: 190 ----AEMNGKMI 197
+NGK+I
Sbjct: 84 VLNFTPLNGKII 95
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/477 (74%), Positives = 397/477 (83%), Gaps = 7/477 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQER+ V K+KFNNVFVKNL E+TT+EDL K F E+GT+TS VV
Sbjct: 180 MLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVV 239
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKS+CFGFVNFENADDAA+AV+ LNGK DD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 240 MRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQ 299
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
MKE DK+QG NLYIKNL DSI D+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 300 TMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFS 359
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TP+EASRAL EMNGKM+VSKPLYVA+AQRKE+RRARLQAQFSQ+R V M SV PRMP+Y
Sbjct: 360 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIY 419
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQAPPA+IP Q GFGYQQQLVPG+RP G PMPNFFVP+V Q Q +
Sbjct: 420 PPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQ-GQQGQ 478
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
G R AG VQQTQQP+P+M QM PR G YRYP GR + D AG M VP DMG
Sbjct: 479 RPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMG 538
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA+ QP+PI AL++ALANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLE
Sbjct: 539 -GMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLE 597
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSV----AQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLR+V QQQA N ADQLASLSL ENLVS
Sbjct: 598 MDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 654
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G+I S V D G+SK +GFV F+
Sbjct: 106 HRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFD 165
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A KA+E LNG +D++ YVG +K ER+ VDK + N+++K
Sbjct: 166 NEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDG------------VVDKSKFNNVFVK 213
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E L + FSEFGT+TS VMRD G S+ GFV F ++A+RA+ +NGK++
Sbjct: 214 NLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLV 273
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 274 DDKEWYVGKAQKKSEREVELKHRFEQ 299
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 100/185 (54%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L IF + G + S V RD +S +G+VN+ N DAA+A++
Sbjct: 30 SLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + V S R+ ++ K N++IKNL +ID + L
Sbjct: 90 LNFTPLNGKPIRV----MYSHRDPSIR------------KSGAGNIFIKNLDKAIDHKAL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG+I SCKV D SG SKG GFV F E A +A+ ++NG ++ K +YV
Sbjct: 134 HDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFL 193
Query: 209 RKEER 213
RK+ER
Sbjct: 194 RKQER 198
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/477 (75%), Positives = 401/477 (84%), Gaps = 7/477 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQER+ V K+KFNNVFVKNL E+TT+EDL K F E+GT+TS VV
Sbjct: 102 MLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVV 161
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKS+CFGFVNFENADDAA+AV+ LNGK DD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 162 MRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQ 221
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
MKE DK+QG NLYIKNL DSI D+KLKELF+ FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 222 TMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFS 281
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TP+EASRAL EMNGKM+VSKPLYVA+AQRKE+RRARLQAQFSQ+R V M SV PRMP+Y
Sbjct: 282 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIY 341
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQAPPA+IP Q GFGYQQQLVPG+RP G PMPNFFVP+V QGQQGQR
Sbjct: 342 PPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQR 401
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
G R AG VQQTQQP+P+M QM PR G YRYP GR + D AG M VP DMG
Sbjct: 402 -PGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMG 460
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P RDA+ QP+PI AL++ALANA+P+QQRT+LGE+LYPLVEQLE D AAKVTGMLLE
Sbjct: 461 -GMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLE 519
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSV----AQQQANNPADQLASLSLNENLVS 472
MDQTEVLHLLESPEALKAKVAEAMEVLR+V QQQA N ADQLASLSL ENLVS
Sbjct: 520 MDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 576
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G+I S V D G+SK +GFV F+
Sbjct: 28 HRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFD 87
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A KA+E LNG +D++ YVG +K ER+ VDK + N+++K
Sbjct: 88 NEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDG------------VVDKSKFNNVFVK 135
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E L + FSEFGT+TS VMRD G S+ GFV F ++A+RA+ +NGK++
Sbjct: 136 NLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLV 195
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F Q
Sbjct: 196 DDKEWYVGKAQKKSEREVELKHRFEQ 221
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/474 (71%), Positives = 386/474 (81%), Gaps = 20/474 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG F RKQ+RE+ TKFNNV+VKNL E+TT+ DLK IFGEYG ITSAVV
Sbjct: 175 MLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSK FGFVNF N +DAAKAVEALNGK FD +EWYVGKAQKKSERE ELK + EQ
Sbjct: 235 MRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ KETVDK+ G NLYIKNL DS+ DE+L+ELFSEFGTITSCKVMRDPSGIS+GSGFVAFS
Sbjct: 295 STKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
E AS AL EMNGKM+ KPLYVA+AQRKE+RRARLQAQFSQ RPVA+ P+V PRMP+Y
Sbjct: 355 IAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLY 414
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
P G G+GQQ LYGQA P++I PQA FGYQQ VPGMRP GA PNF+VP+V QGQQGQR
Sbjct: 415 PLGAPGIGQQLLYGQAAPSMI-PQAAFGYQQHFVPGMRPGGA--PNFYVPLVQQGQQGQR 471
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
GG+RGAGP+QQ QQPLP+M QM PRGH YRYP G NMQ+ A
Sbjct: 472 SGGQRGAGPMQQLQQPLPLMHQQMLPRGHVYRYPPGSNMQNIQL---------------A 516
Query: 361 GIPRRDAS--VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G+P S +GQPMP AL++ALANA+PEQQRT+LGE+LYPLV++LE + AAKVTGMLL
Sbjct: 517 GVPGGMVSYGIGQPMPTQALASALANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLL 576
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
EMDQ EVLHL+ESP+ALKAKV EAM+VLR V QQQ+N+PADQLASLSLN+N+ S
Sbjct: 577 EMDQPEVLHLIESPDALKAKVVEAMDVLRKVTQQQSNSPADQLASLSLNDNVES 630
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 116/205 (56%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K+ NVF+KNLD++ + L F +G I S + D G+SK GFV FE+
Sbjct: 102 RDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFES 161
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ YVG Q+K +RE L G KF N+Y+KN
Sbjct: 162 EESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGT----------KFN--NVYVKN 209
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ++ + LK +F E+G ITS VMRD G SKG GFV F+ E+A++A+ +NGK
Sbjct: 210 LFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFD 269
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ + Q
Sbjct: 270 GKEWYVGKAQKKSERELELKERNEQ 294
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD D L +F + + S + RD +S +G+VNF NA DAAKA++
Sbjct: 25 SLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDV 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + S R+ + K N++IKNL +ID + L
Sbjct: 85 LNFTPLNGKTIRI----MYSIRDPSAR------------KSGAANVFIKNLDKAIDHKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG SKG GFV F + E A A+ ++NG +I K +YV Q
Sbjct: 129 FDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQ 188
Query: 209 RKEERRARL 217
RK++R + L
Sbjct: 189 RKQDRESAL 197
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALA 190
++LY+ +L ++D +L +LF++ + S ++ RD + S G G+V FS +A++A+
Sbjct: 24 ISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAID 83
Query: 191 EMNGKMIVSKPLYVAVAQRKEERR 214
+N + K + + + R R
Sbjct: 84 VLNFTPLNGKTIRIMYSIRDPSAR 107
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/476 (68%), Positives = 387/476 (81%), Gaps = 9/476 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQERE V+ KFNNV+VKNL ESTT+++LK+IFG++G ITS VV
Sbjct: 190 MLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVV 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MR+GDGKS+CFGFVNFEN DDAA+AVE LNGKKFDD+EWYV +AQKKSERE ELK +FE+
Sbjct: 250 MREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEK 309
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDD-EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+KE DK QG NLY+KNL DSIDD EKLKE+F++FGTITSCKVMRD +G+SKGSGFVAF
Sbjct: 310 NIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAF 369
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ E+ASRAL MNGKMI SKPLYVA+AQRKEERRARLQAQFSQMRP+ M PSV PRMPM
Sbjct: 370 KSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPM 429
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG G+GQQ YGQ PPA + PQ GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ Q
Sbjct: 430 YPPGVPGVGQQLFYGQPPPAFVNPQPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQ 489
Query: 300 RPGGRR-GAGPVQQTQQPLPIMPHQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPV 356
RP GRR G G + QQP+P+ QM PRG YRY GR M D F G G ++P P
Sbjct: 490 RPAGRRAGTGGI---QQPMPMGHQQMLPRGSRGGYRYASGRGMPDNAF-RGVGGLVPSPY 545
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
+MG +P DA +PI AL++ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGM
Sbjct: 546 EMGR-MPLSDAGAPPQVPIGALASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGM 604
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
LLEMDQTEVLHL+ESP+ALKAKVAEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 605 LLEMDQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 660
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +G I S V + G+SK +GFV FE
Sbjct: 117 RDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFEL 176
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+ LNG +D++ YVG +K ERE + G KF N+Y+KN
Sbjct: 177 EEAAQNAISKLNGMLLNDKKVYVGPFVRKQEREN-VSGN---------PKFN--NVYVKN 224
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S ++ LKE+F +FG ITS VMR+ G S+ GFV F P++A+RA+ ++NGK
Sbjct: 225 LSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFD 284
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F +
Sbjct: 285 DKEWYVCRAQKKSEREMELKEKFEK 309
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G++ S V RD + + S + +VNF + DAA+A+E
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + K N++IKNL SID++ L
Sbjct: 100 LNFTPINGKPIRIMYSNRDPSSR----------------KSGAANIFIKNLDKSIDNKAL 143
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV + SG SKG GFV F E A A++++NG ++ K +YV
Sbjct: 144 YDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFV 203
Query: 209 RKEER 213
RK+ER
Sbjct: 204 RKQER 208
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
FQ +LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I KP+ + + R R
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSR 122
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/473 (69%), Positives = 375/473 (79%), Gaps = 4/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQERE KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+
Sbjct: 190 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NF++ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 250 MVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQ 309
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QGLNLY+KNL DSI D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFS
Sbjct: 310 SMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFS 369
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+A LQAQFSQ+RPV M PS+ PR+PMY
Sbjct: 370 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMY 429
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP + LGQQ YGQAPPAI+PPQ GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG R
Sbjct: 430 PP-MAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPR 488
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PG RR Q QQ QM PRG YRYP NM D P G + DMG
Sbjct: 489 PGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG- 547
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G P RDA + P PI L++ALANA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEM
Sbjct: 548 GFPVRDAGL-SPAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEM 606
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALK+KVAEAM+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 607 DQTEVLHLLESPEALKSKVAEAMDVLRNVAQQHNANTPTSQLAALSLGDAIIS 659
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ + L F +G I S V D G+SK FGFV ++ + A A+++L
Sbjct: 128 NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSL 187
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ERE +VDK + N+++KNL +S E L
Sbjct: 188 NGMLINDKPVYVGPFLRKQERE------------NSVDKTKFNNVFVKNLSESTTKEDLV 235
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++F +G ITS +M G S+ GF+ F +P++A+RA+ E+NGK I K YV AQ+
Sbjct: 236 KIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQK 295
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 296 KSEREIELKRRFEQ 309
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ S TD L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + V + + + N++IKNL +ID + L
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKAIDHKTL 143
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 209 RKEER 213
RK+ER
Sbjct: 204 RKQER 208
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + KP+ V + R R
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSR 122
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 328/473 (69%), Positives = 374/473 (79%), Gaps = 4/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQERE KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+
Sbjct: 190 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NF++ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 250 MVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQ 309
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QGLNLY+KNL DSI D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFS
Sbjct: 310 SMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFS 369
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+ LQAQFSQ+RPV M PS+ PR+PMY
Sbjct: 370 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKVMLQAQFSQVRPVPMTPSMAPRLPMY 429
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP + LGQQ YGQAPPAI+PPQ GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG R
Sbjct: 430 PP-MAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPR 488
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PG RR Q QQ QM PRG YRYP NM D P G + DMG
Sbjct: 489 PGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG- 547
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G P RDA + P PI L++ALANA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEM
Sbjct: 548 GFPVRDAGL-SPAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEM 606
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALK+KVAEAM+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 607 DQTEVLHLLESPEALKSKVAEAMDVLRNVAQQHNANTPTSQLAALSLGDAIIS 659
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ + L F +G I S V D G+SK FGFV ++ + A A+++L
Sbjct: 128 NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSL 187
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ERE +VDK + N+++KNL +S E L
Sbjct: 188 NGMLINDKPVYVGPFLRKQERE------------NSVDKTKFNNVFVKNLSESTTKEDLV 235
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++F +G ITS +M G S+ GF+ F +P++A+RA+ E+NGK I K YV AQ+
Sbjct: 236 KIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQK 295
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 296 KSEREIELKRRFEQ 309
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ S TD L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + V + + + N++IKNL +ID + L
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKAIDHKTL 143
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 209 RKEER 213
RK+ER
Sbjct: 204 RKQER 208
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + KP+ V + R R
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSR 122
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 322/473 (68%), Positives = 385/473 (81%), Gaps = 9/473 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQER+ KFNNVFVKNL E+TT++DL++IFG++GTITS VV
Sbjct: 185 MLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVV 244
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MR+GDG+SKCFGFVNFE+ D+AA AV+ LNGKKFDD+EWYVG+AQKKSERE ELK +FE+
Sbjct: 245 MREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEK 304
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++ET DK+Q NLY+KNL D++DDEKL+ELF+EFG ITSCKVMRD +G S+GSGFVAF
Sbjct: 305 NLQETADKYQNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFK 364
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+ E+ASRALAEMN KM+ SKPLYVA+AQRKE+R+ARLQAQFSQ+RPV M P+V PRM M+
Sbjct: 365 SAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPVPMAPTVGPRMAMF 424
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPA I PQ GFG+QQ L+PGMRP GAPMPNF +P+V QGQQ QR
Sbjct: 425 PPGVPGVGQQLFYGQPPPAFINPQPGFGFQQPLMPGMRP-GAPMPNFMMPMVQQGQQPQR 483
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
P GRR G G +QQ+ +P+ QM R G YRYP GR M D P G G +P P ++
Sbjct: 484 PSGRRAGTGGMQQS---MPMGQQQMIARGGRGYRYPTGRGMPD-PAMHGVGGGMPSPYEI 539
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G G+P RDA QP+PI AL+TALANA P+QQR +LGE+LYPLV+QLE D AAKVTGMLL
Sbjct: 540 G-GMPMRDAGASQPVPIGALATALANAPPDQQRMMLGENLYPLVDQLEHDQAAKVTGMLL 598
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
EMDQTEVLHLLESP+ALKAKVAEAMEVLRS AQ +P QLASLSLN++ V
Sbjct: 599 EMDQTEVLHLLESPDALKAKVAEAMEVLRS-AQHTNPSPEQQLASLSLNDHGV 650
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V D G+SK +GFV +E + A
Sbjct: 118 KSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHA 177
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E LNG +D++ YVG +K ER+ G KF N+++KNL ++
Sbjct: 178 AIEKLNGMLMNDKKVYVGPFIRKQERDNS-PGNV---------KFN--NVFVKNLSETTT 225
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L+E+F +FGTITS VMR+ G SK GFV F +P+EA+ A+ ++NGK K YV
Sbjct: 226 EDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYV 285
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F +
Sbjct: 286 GRAQKKSEREMELKEKFEK 304
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G + S V RD KS + +VN+ DAA+A+E
Sbjct: 35 SLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEM 94
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + S R+ L+ K N++IKNL SID++ L
Sbjct: 95 LNFTPINGRPIRI----MYSNRDPSLR------------KSGTANIFIKNLDKSIDNKAL 138
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCKV D SG SKG GFV + E A A+ ++NG ++ K +YV
Sbjct: 139 YDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFI 198
Query: 209 RKEER 213
RK+ER
Sbjct: 199 RKQER 203
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L S+ D +L ++F++ G + S +V RD + S G +V ++TP +A+R
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I +P+ + + R R
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLR 117
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 318/476 (66%), Positives = 386/476 (81%), Gaps = 12/476 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK+VFVG F+RKQ+RE V+ KF+NV+VKNL ++ TD++LK++FG+YGTITSAVV
Sbjct: 186 MLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVV 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKS+CFGFVNFENAD AA+AV+ LNGK F+D+E YVG+AQKKSERE ELK +FE+
Sbjct: 246 MRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEK 305
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++E +KFQ NLY+KNL ++IDDEKL+ELF+E+G ITSCKVMRD +G+S+GSGFVAF
Sbjct: 306 NVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFK 365
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+ E+A+RAL EMNGKM+ SKPLYVA+AQRKE+R+A+LQAQFSQMRPVAM PSV PRMPM+
Sbjct: 366 SAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMF 425
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPA I PQAGF +QQ L+PGMRP G PMPNF +P+V QGQQ QR
Sbjct: 426 PPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRP-GGPMPNFMMPMVQQGQQPQR 484
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
P GRR G QQP+P+ Q P G YRYP GR M D P G+++P +M
Sbjct: 485 PAGRRAGG----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPD-PGMHSVGAVMPPSYEM 539
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G G+P R+A+ QP+PI AL+TALANA P+QQR +LGE+LYPLVEQLER+ AAKVTGMLL
Sbjct: 540 G-GMPMREAAP-QPVPIGALATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLL 597
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA--DQLASLSLNENLVS 472
EMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N + QLA+LSLN+ +VS
Sbjct: 598 EMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLSLNDGVVS 653
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +G I S + D G+S+ +GFV FE
Sbjct: 113 RDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEK 172
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ +VG +K +RE + N+Y+KN
Sbjct: 173 DESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE------------NVSSNIKFSNVYVKN 220
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D++ D++LKE+F ++GTITS VMRD G S+ GFV F + A++A+ E+NGK+
Sbjct: 221 LSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFN 280
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K LYV AQ+K ER L+ +F +
Sbjct: 281 DKELYVGRAQKKSEREMELKEKFEK 305
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 88
+++V +L ES D L +F + G + S V RD + KS + +VN+ N DAA+A+E
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + + G N++IKNL SID++ L
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCK+ DPSG S+G GFV F E A A+ ++NG +I K ++V
Sbjct: 140 YDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFV 199
Query: 209 RKEER 213
RK++R
Sbjct: 200 RKQDR 204
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L +S+ D +L ++FS+ G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 348/450 (77%), Positives = 389/450 (86%), Gaps = 2/450 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG F+RKQERE+ K KFNNVFVKN+ E T+EDL +IFGE+G ITS VV
Sbjct: 181 MLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVV 240
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFEN DDAA +VEALNG+KFDD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 241 MRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQ 300
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
MKE VDKFQG NLYIKNL DSI D+KLKELF++FGTITSCKVMRDP+G+S+GSGFVAFS
Sbjct: 301 NMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFS 360
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEASRALAEMN KM+VSKPLYVA+AQRKE+RRARLQAQFSQMRPV M PSV PR+PMY
Sbjct: 361 SPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMY 420
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP GLGQQ YGQAPPAIIPPQ GFGYQQQLVPGMRPAG PMPNFFVP+V QGQQGQR
Sbjct: 421 PPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQR 480
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
PGGRR GA P+QQTQQ +P+M QM PRG +RYP GR + D P AG M+ VP DMG
Sbjct: 481 PGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVPMPGVAGGMVSVPYDMG 540
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G+P DA++ Q +P+ AL+TALANA P +QRT+LGE+LYPLVEQLE + AAKVTGMLLE
Sbjct: 541 -GMPLHDAAISQSIPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLE 599
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
MDQTEVLHLLESP+ALKAKVAEAMEVLR+V
Sbjct: 600 MDQTEVLHLLESPDALKAKVAEAMEVLRNV 629
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+ + L F +G I S V D G SK GFV F++ + A K
Sbjct: 114 KSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQK 173
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ +VG +K ERE T++K + N+++KN+ + +
Sbjct: 174 AIDKLNGMLLNDKQVFVGPFVRKQERE------------STINKEKFNNVFVKNISEGMT 221
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+E L +F EFG ITS VMRD G SK GFV F ++A+ ++ +NG+ K YV
Sbjct: 222 EEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYV 281
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+++F Q
Sbjct: 282 GKAQKKSEREIELKSRFEQ 300
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 17/193 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L+ + D L +F + G + S V RD +S +G+VN+ N DAA+A++
Sbjct: 30 TSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 89
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + + + + + G N++IKNL ID +
Sbjct: 90 VLNFTPLNGKPIRIMYSHRDPSIRKSGTG----------------NIFIKNLDKGIDHKA 133
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV D SG+SKG GFV F + E A +A+ ++NG ++ K ++V
Sbjct: 134 LHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPF 193
Query: 208 QRKEERRARLQAQ 220
RK+ER + + +
Sbjct: 194 VRKQERESTINKE 206
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEAS 186
+F +LY+ +L +++D +L +LFS+ G + S +V RD S S G G+V +S P++A+
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAA 85
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
RAL +N + KP+ + + R
Sbjct: 86 RALDVLNFTPLNGKPIRIMYSHR 108
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 326/474 (68%), Positives = 375/474 (79%), Gaps = 8/474 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK VFVG FLRKQER+ KTKFNNVFVKNL ESTT EDL K+FGEYG+ITSAVV
Sbjct: 197 MLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVV 256
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NFEN D A++AV+ LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 257 MIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQ 316
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++K+ DK+QGLNLY+KNL DSI D++L+ELFS FG ITS KVMRD +G+SKGSGFVAFS
Sbjct: 317 SLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFS 376
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP-VAMGPSVPPRMPM 239
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+A LQAQFSQMRP V M P++ PR+PM
Sbjct: 377 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPM 436
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPP QQ YGQAPPA+IPPQ GFG+QQQLVPGMRP G MPN+FVPVV QGQQG
Sbjct: 437 YPPMAP---QQLFYGQAPPAMIPPQPGFGFQQQLVPGMRPGGPHMPNYFVPVVQQGQQGP 493
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
RPG RRGAG Q P Q+ PRG YRYP GRNM + P G + DMG
Sbjct: 494 RPGMRRGAGAQGQQPV--PPFQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMIQAYDMG 551
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
G P RDA+V I L++ALANA+PEQQRT+LGE+LYPLVEQLE + AAKVTGMLLE
Sbjct: 552 -GFPVRDAAVSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLE 610
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA-NNPADQLASLSLNENLVS 472
MDQTEVLHLLESP+ALK+KVAEAM+VLR+VA QQ N P +QLA+LSL E ++S
Sbjct: 611 MDQTEVLHLLESPDALKSKVAEAMDVLRNVAHQQNPNTPTNQLAALSLTEGIIS 664
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 16/222 (7%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++N+K + V + R+ + ++ N+F+KNLD++ ++ L + F +GTI S V
Sbjct: 111 VLNNKPIRVMY----SNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVA 166
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
D G+SK FGFV +E + A A+++LNG +D+ +VG +K ER+
Sbjct: 167 MDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDH--------- 217
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ DK + N+++KNL +S E L ++F E+G+ITS VM G S+ GF+ F
Sbjct: 218 ---SFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFEN 274
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
P+ ASRA+ E+NGK I K YV AQ+K ER L+ +F Q
Sbjct: 275 PDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQ 316
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ S +D L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ V + + + N++IKNL +ID++ L
Sbjct: 107 LNFAVLNNKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKTIDNKTL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D +G SKG GFV + E A A+ +NG +I KP++V
Sbjct: 151 HETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFL 210
Query: 209 RKEER 213
RK+ER
Sbjct: 211 RKQER 215
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V FS P +A+RAL
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N ++ +KP+ V + R R
Sbjct: 107 LNFAVLNNKPIRVMYSNRDPSSR 129
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 338/472 (71%), Positives = 379/472 (80%), Gaps = 24/472 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK V+VGHF RKQ+R+ KFNNV+VKNL ES TD+DLK FGEYGTITSAVV
Sbjct: 175 MLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFENAD AA+AVEALNGKKFDD+EWYVGKA KK ERE ELK + EQ
Sbjct: 235 MRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKETVDKF G NLY+KNL DS+ DEKL ELFSEFGT+TSCK++RDP GIS+GSGFVAFS
Sbjct: 295 SMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+RALAEMNGKM+ KPLYVA AQ+KEER+ARLQAQFSQ+RPV M P + PR+P Y
Sbjct: 355 TPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVTMAP-IAPRLPFY 413
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
P G G+GQQ +YGQAPPA I QAGFGY QQLVPGMRP GAPMPNFF+P+V QGQQGQR
Sbjct: 414 PAGVPGMGQQIMYGQAPPAFI-SQAGFGYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQR 472
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGGRRGA P+QQ LP+M QM PRG YRYP GRN Q
Sbjct: 473 PGGRRGASPMQQLPHSLPMMQQQMHPRGRVYRYPTGRNPQ-------------------- 512
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
GIP + G PM AL+TALANA PEQQRT+LGE LYPLVE++E AAKVTGMLLEM
Sbjct: 513 GIPMPGVAGGTPM--QALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEM 570
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQ EVLHL+ESPEALK KVAEA++VLR+VAQQQ+N+P DQLASLSLN+NL S
Sbjct: 571 DQPEVLHLIESPEALKTKVAEAVDVLRNVAQQQSNSPTDQLASLSLNDNLES 622
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD + + L F +G I S + D G SK +GFV FE
Sbjct: 101 HRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFE 160
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A A++ LNG +D+ YVG Q+K +R+ L KF N+Y+K
Sbjct: 161 NEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNA----------KFN--NVYVK 208
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S+ D+ LK F E+GTITS VMRD G SK GFV F + A+ A+ +NGK
Sbjct: 209 NLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKF 268
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV A +K ER L+ + Q
Sbjct: 269 DDKEWYVGKALKKYERELELKERHEQ 294
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD TD L +F + G + S + RD +S +G+VNF N DAAKA++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ + + + +V K N++IKNL +ID + L
Sbjct: 85 LNFTPLNNKPIRIMYSHRDP----------------SVRKSGAANIFIKNLDRAIDHKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG+SKG GFV F E A A+ ++NG ++ KP+YV Q
Sbjct: 129 YDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQ 188
Query: 209 RKEERRARL-QAQFSQMRPVAMGPSV 233
RK++R L A+F+ + + SV
Sbjct: 189 RKQDRDNALSNAKFNNVYVKNLSESV 214
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 324/473 (68%), Positives = 369/473 (78%), Gaps = 6/473 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQERE KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+
Sbjct: 190 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NF++ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 250 MVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQ 309
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QGLNLY+KNL DSI D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFS
Sbjct: 310 SMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFS 369
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T L EMNGKMI KPLYVA AQRKE+R+A LQAQFSQ+RPV M PS+ PR+PMY
Sbjct: 370 TLPFIQ--LTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMY 427
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP + LGQQ YGQAPPAI+PPQ GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG R
Sbjct: 428 PP-MAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPR 486
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PG RR Q QQ QM PRG YRYP NM D P G + DMG
Sbjct: 487 PGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG- 545
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G P RDA + P PI L++ALANA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEM
Sbjct: 546 GFPVRDAGL-SPAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEM 604
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALK+KVAEAM+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 605 DQTEVLHLLESPEALKSKVAEAMDVLRNVAQQHNANTPTSQLAALSLGDAIIS 657
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ + L F +G I S V D G+SK FGFV ++ + A A+++L
Sbjct: 128 NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSL 187
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ERE +VDK + N+++KNL +S E L
Sbjct: 188 NGMLINDKPVYVGPFLRKQERE------------NSVDKTKFNNVFVKNLSESTTKEDLV 235
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++F +G ITS +M G S+ GF+ F +P++A+RA+ E+NGK I K YV AQ+
Sbjct: 236 KIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQK 295
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 296 KSEREIELKRRFEQ 309
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ S TD L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + V + + + N++IKNL +ID + L
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKAIDHKTL 143
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 209 RKEER 213
RK+ER
Sbjct: 204 RKQER 208
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + KP+ V + R R
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSR 122
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 317/473 (67%), Positives = 381/473 (80%), Gaps = 3/473 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQER+ + KFNNV+VKNL E+TT++DLK+IFG++GTITSAVV
Sbjct: 191 MLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVV 250
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MR+GDG+SKCFGFVNFE+ DDAA+AV+ LNGKKFDD+EWYVG+AQKKSERE ELK +FE+
Sbjct: 251 MREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEK 310
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++E DK+Q NLY+KNL DS+DD+KL+ELF+E+GTITSCKVMRD +G+S+GSGFVAF
Sbjct: 311 NLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFK 370
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+ E+ASRALAEMN KM+ SKPLYVA+AQRKE+R+ARLQAQFSQ+RPV + PSV PRMPM+
Sbjct: 371 SAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMF 430
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPA I Q GFG+QQ L+PGMRP PMPNF +P+V QGQQ QR
Sbjct: 431 PPGVPGVGQQLFYGQPPPAFINTQPGFGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQR 490
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
P GRR AG Q M G YRYP GR M D G ++P P +MG
Sbjct: 491 PAGRR-AGAGGMQQPMPMGQQQMMARGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMG- 548
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA+ QP+PI AL+TALANA+P+QQR +LGE+LYPLV+QLE + AAKVTGMLLEM
Sbjct: 549 GMPMRDAAASQPVPIGALATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEM 608
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN-NPADQLASLSLNENLVS 472
DQTEVLHLLESPEALKAKVAEAMEVLR+ Q Q N P QLASLSLN+ +VS
Sbjct: 609 DQTEVLHLLESPEALKAKVAEAMEVLRTAQQIQTNATPEQQLASLSLNDGVVS 661
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V D G+SK +GFV +E + A
Sbjct: 124 KSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQA 183
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ YVG +K ER+ GQ KF N+Y+KNL ++
Sbjct: 184 AIDKLNGMLMNDKKVYVGPFIRKQERDNS-PGQV---------KFN--NVYVKNLSENTT 231
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ LKE+F +FGTITS VMR+ G SK GFV F +P++A++A+ E+NGK K YV
Sbjct: 232 EDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYV 291
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F +
Sbjct: 292 GRAQKKSEREMELKEKFEK 310
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G + S V RD + + S + +VN+ + DAA+A+E
Sbjct: 41 SLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEM 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + S R+ L+ K N++IKNL SID++ L
Sbjct: 101 LNFTPINGKPIRI----MYSNRDPSLR------------KSGTANIFIKNLDKSIDNKAL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCKV D SG SKG GFV + E A A+ ++NG ++ K +YV
Sbjct: 145 YDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFI 204
Query: 209 RKEER 213
RK+ER
Sbjct: 205 RKQER 209
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L S+ D +L ++F++ G + S +V RD + S G +V +S+P +A+R
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I KP+ + + R R
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLR 123
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 318/482 (65%), Positives = 381/482 (79%), Gaps = 14/482 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F+ K +R+ K KF NV+VKNL ES +DE+L K+FGE+G TS V+
Sbjct: 190 MLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDG+GKSK FGFVNFEN+DDAA+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ
Sbjct: 250 MRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 309
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DK QG NLY+KNL +S+ D+KL+E F+ FGTITSCKVMRDP+G+S+GSGFVAFS
Sbjct: 310 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFS 369
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRA+ EMNGKMIV+KPLYVA+AQRKE+R+ARLQAQFSQMRPV M P+V PRM MY
Sbjct: 370 TPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMY 429
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG +GQQ YGQ PPA+IPPQ GFGYQQQLVPGMRP G+PMPNFF+P++ QGQQ Q+
Sbjct: 430 PPGGPPMGQQLFYGQGPPAMIPPQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQ 489
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMP---------PRGHAYRYPLGRNMQDFPFDMGAGSM 351
++ ++ + Q P PRG YRYP R++ P +M
Sbjct: 490 QQQQQQQQRPGGGRRGGALPQPQQPSPMMQQQMHPRGRMYRYPQ-RDVNTMP--GLTPNM 546
Query: 352 LPVPVDM--GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
L VP D+ G G+ RD+ Q +PI AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++
Sbjct: 547 LSVPYDVSSGGGVHHRDSPASQSVPIGALATQLANAAPEQQRTMLGENLYPLVEQLEPES 606
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNEN 469
AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAM+VLRSVAQQQA ADQLASLSL +N
Sbjct: 607 AAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDN 666
Query: 470 LV 471
+V
Sbjct: 667 IV 668
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L + F +G I S V D G+SK +GFV ++ + A +
Sbjct: 123 KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQR 182
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ YVG K +R+ + +K + N+Y+KNL +S+
Sbjct: 183 AIDKLNGMLLNDKQVYVGPFVHKLQRD------------PSGEKVKFTNVYVKNLSESLS 230
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L ++F EFG TSC +MRD G SKG GFV F ++A+RA+ +NGK K +V
Sbjct: 231 DEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFV 290
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F Q
Sbjct: 291 GKAQKKSERETELKQKFEQ 309
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +LD + TD L + F + G + S V RD +S +G+VN+ DA++A+
Sbjct: 39 TSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 98
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R V S R+ L+ K V N++IKNL SID +
Sbjct: 99 ELNFMALNGRAIRV----MYSVRDPSLR-------KSGVG-----NIFIKNLDKSIDHKA 142
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L E FS FG I SCKV DPSG SKG GFV + T E A RA+ ++NG ++ K +YV
Sbjct: 143 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPF 202
Query: 208 QRKEER 213
K +R
Sbjct: 203 VHKLQR 208
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L ++ D +L E FS+ G + S +V RD + S G G+V ++TP++ASRAL E
Sbjct: 40 SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 99
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + + + V + R R
Sbjct: 100 LNFMALNGRAIRVMYSVRDPSLR 122
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 317/476 (66%), Positives = 374/476 (78%), Gaps = 10/476 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQERE V KFNNV+VKNL ESTT+++LK++FG +G ITS +V
Sbjct: 193 MLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIV 252
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+R DGKS+CFGFVNFEN DDA AVE LNGKKFDD+E YVG+AQKKSERE +LK FE+
Sbjct: 253 VRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEK 312
Query: 121 AMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ KET D+ QG NLY+KNL S+ DDEKLKELF+EFGTITSCKVMRD +G++KGSGFVAF
Sbjct: 313 SNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAF 372
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ E+A+RAL MNGKM+ SKPLYVA+AQRKEERRARLQAQFSQMRPV M P V PRMPM
Sbjct: 373 KSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMRPV-MPPPVAPRMPM 431
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG G+GQQ YGQ PPA + PQ G+G+QQ ++PGMRP APMPNF +P+V QGQQ Q
Sbjct: 432 YPPGVPGMGQQLFYGQPPPAFVNPQPGYGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQ 491
Query: 300 RPGGRR-GAGPVQQTQQPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPV 356
RP GRR GAG + QQP+P+ QM PRG YRY GR M + F G G M P
Sbjct: 492 RPSGRRAGAGGM---QQPMPMGHQQMVPRGGRGGYRYASGRGMPEAAF-RGVGGMAPSLY 547
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
+MG P D Q + AL++ALAN+ PEQQR +LGESLYPLV+QLE D AAKVTGM
Sbjct: 548 EMGRMTP-GDTGAPQQVSSGALASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGM 606
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
LLEMDQTEVLHL+ESP+ALK+KVAEAMEVLRS QQQ N PADQLA+LSL++ V+
Sbjct: 607 LLEMDQTEVLHLIESPDALKSKVAEAMEVLRSAQQQQTNVPADQLAALSLSDGFVA 662
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +G I S V + G+SK +GFV +E
Sbjct: 120 RDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQ 179
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+ LNG +D++ YVG +K ERE KF N+Y+KN
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS----------PKFN--NVYVKN 227
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S ++ LKELF FG ITS V+R G S+ GFV F P++A A+ ++NGK
Sbjct: 228 LSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFD 287
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K LYV AQ+K ER +L+ F +
Sbjct: 288 DKELYVGRAQKKSEREMQLKESFEK 312
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G++ S V RD + + S + +VNF + DAA+A+E
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + K N++IKNL SID++ L
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSR----------------KSGAANIFIKNLDKSIDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV + SG SKG GFV + E A A+ E+NG ++ K +YV
Sbjct: 147 YDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 209 RKEER 213
RK+ER
Sbjct: 207 RKQER 211
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+RAL
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + KP+ + + R R
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSR 125
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 317/476 (66%), Positives = 374/476 (78%), Gaps = 10/476 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQERE V KFNNV+VKNL ESTT+++LK++FG +G ITS +V
Sbjct: 193 MLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIV 252
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+R DGKS+CFGFVNFEN DDA AVE LNGKKFDD+E YVG+AQKKSERE +LK FE+
Sbjct: 253 VRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEK 312
Query: 121 AMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ KET D+ QG NLY+KNL S+ DDEKLKELF+EFGTITSCKVMRD +G++KGSGFVAF
Sbjct: 313 SNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAF 372
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ E+A+RAL MNGKM+ SKPLYVA+AQRKEERRARLQAQFSQMRPV M P V PRMPM
Sbjct: 373 KSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMRPV-MPPPVAPRMPM 431
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG G+GQQ YGQ PPA + PQ G+G+QQ ++PGMRP APMPNF +P+V QGQQ Q
Sbjct: 432 YPPGVPGMGQQLFYGQPPPAFVNPQPGYGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQ 491
Query: 300 RPGGRR-GAGPVQQTQQPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPV 356
RP GRR GAG + QQP+P+ QM PRG YRY GR M + F G G M P
Sbjct: 492 RPSGRRAGAGGM---QQPMPMGHQQMVPRGGRGGYRYASGRGMPEAAF-RGVGGMAPSLY 547
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
+MG P D Q + AL++ALAN+ PEQQR +LGESLYPLV+QLE D AAKVTGM
Sbjct: 548 EMGRMTP-GDTGAPQQVSSGALASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGM 606
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
LLEMDQTEVLHL+ESP+ALK+KVAEAMEVLRS QQQ N PADQLA+LSL++ V+
Sbjct: 607 LLEMDQTEVLHLIESPDALKSKVAEAMEVLRSAQQQQTNVPADQLAALSLSDGFVA 662
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +G I S V + G+SK +GFV +E
Sbjct: 120 RDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQ 179
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+ LNG +D++ YVG +K ERE KF N+Y+KN
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS----------PKFN--NVYVKN 227
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S ++ LKELF FG ITS V+R G S+ GFV F P++A A+ ++NGK
Sbjct: 228 LSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFD 287
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K LYV AQ+K ER +L+ F +
Sbjct: 288 DKELYVGRAQKKSEREMQLKESFEK 312
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 89
++V +LD S D L +F + G++ S V RD + + S + +VNF + DAA+A+E L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + + + + K N++IKNL SID++ L
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSR----------------KSGAANIFIKNLDKSIDNKALY 147
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV + SG SKG GFV + E A A+ E+NG ++ K +YV R
Sbjct: 148 DTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVR 207
Query: 210 KEER 213
K+ER
Sbjct: 208 KQER 211
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+RAL +
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + KP+ + + R R
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSR 125
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 325/479 (67%), Positives = 385/479 (80%), Gaps = 12/479 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F+ K +R+ K KF NV+VKNL ES +DE+L K+FGE+G TS V+
Sbjct: 196 MLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI 255
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDG+GKSK FGFVNFEN+DDAA+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ
Sbjct: 256 MRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DK QG NLY+KNL +S+ D+KL+E F+ FGTITSCKVMRDPSG+S+GSGFVAFS
Sbjct: 316 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFS 375
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+RA+ EMNGKMIV+KPLYVA+AQRKE+R+ARLQAQFSQMRPV M P+V PRM MY
Sbjct: 376 TPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMY 435
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV------SQ 294
PPG +GQQ YGQ PPA+I PQ GFGYQQQLVPGMRP G+PMPNFF+P++ Q
Sbjct: 436 PPGGPPMGQQLFYGQGPPAMI-PQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQ 494
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
QQ Q+ G G + Q QQP P+M QM PRG YRYP R++ P +ML V
Sbjct: 495 QQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQ-RDVNTMPGP--TQNMLSV 551
Query: 355 PVDM--GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
P D+ G G+ RD+ QP+PI AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAK
Sbjct: 552 PYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAK 611
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
VTGMLLEMDQTEVLHLLESPEALKAKV EAM+VLRSVAQQQA ADQLASLSL +N+V
Sbjct: 612 VTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDNIV 670
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L + F +G I S V D G+SK +GFV ++ + A
Sbjct: 129 KSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQG 188
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ YVG K +R+ + +K + N+Y+KNL +S+
Sbjct: 189 AIDKLNGMLLNDKQVYVGPFVHKLQRD------------PSGEKVKFTNVYVKNLSESLS 236
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L ++F EFG TSC +MRD G SKG GFV F ++A+RA+ +NGK K +V
Sbjct: 237 DEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFV 296
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F Q
Sbjct: 297 GKAQKKSERETELKQKFEQ 315
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +LD + TD L + F + G + S V RD +S +G+VN+ DA++A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R V S R+ L+ K V N++IKNL SID +
Sbjct: 105 ELNFMALNGRAIRV----MYSVRDPSLR-------KSGVG-----NIFIKNLDKSIDHKA 148
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L E FS FG I SCKV DPSG SKG GFV + T E A A+ ++NG ++ K +YV
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPF 208
Query: 208 QRKEER 213
K +R
Sbjct: 209 VHKLQR 214
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L ++ D +L E F++ G + S +V RD + S G G+V ++TP++ASRAL E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + + + V + R R
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLR 128
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 316/480 (65%), Positives = 372/480 (77%), Gaps = 28/480 (5%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++NDKQ+FVG FLRK+ERE+ A K KF NV+VKNL E TTD++LK FG+YG+I+SAVVM
Sbjct: 193 VLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVM 252
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDGDGKS+CFGFVNFEN +DAA+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ
Sbjct: 253 RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG 312
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ +KF GLNLY+KNL D++ DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS
Sbjct: 313 SSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSA 372
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
EASR L EMNGKM+ KPLYVA+AQRKEERRA+LQAQFSQMRP A P V PRMP++P
Sbjct: 373 ASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFP 431
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP 301
G GLGQQ YGQ P IIP Q GFGYQ QLVPG+RP+ F P++ GQQG RP
Sbjct: 432 GGAPGLGQQIFYGQGSPPIIPHQPGFGYQPQLVPGLRPS-------FFPMMQPGQQGPRP 484
Query: 302 GGRR-GAGPV-QQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDM 358
GGRR G GP+ Q QQP+P M QM PRG YRY P GRNM D P G M+PV DM
Sbjct: 485 GGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPPGGRNMPDGPM---LGGMVPVAYDM 541
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G+P + QPM L+T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLL
Sbjct: 542 N-GMP-----IAQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIEHENAAKVTGMLL 595
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ--------QQANNPADQLASLSLNENL 470
EMDQTEVLHLLESPEAL AKV+EA++VLR+V Q ++ +P+D +ASLS+N++
Sbjct: 596 EMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSTQVSEGNKSGSPSDLMASLSINDHF 655
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L + F GTI S V D G+S+ +GFV F+ D A A+E L
Sbjct: 130 NLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKL 189
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NGK +D++ +VG +K ERE DK + N+Y+KNL + D++LK
Sbjct: 190 NGKVLNDKQIFVGPFLRKEERE------------SAADKMKFTNVYVKNLSEVTTDDELK 237
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F ++G+I+S VMRD G S+ GFV F PE+A+RA+ +NGK K YV AQ+
Sbjct: 238 TTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 297
Query: 210 KEERRARLQAQFSQ 223
K ER L ++ Q
Sbjct: 298 KSERELELSRRYEQ 311
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L F E + S V RD S +G+VN+ N +DA KA++
Sbjct: 42 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQK 101
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + S + G NL++KNL S+D++ L
Sbjct: 102 LNYSTLNGKMIRITYSSRDSSARRSGVG----------------NLFVKNLDKSVDNKTL 145
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS GTI SCKV D G S+G GFV F T + A A+ ++NGK++ K ++V
Sbjct: 146 HETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL 205
Query: 209 RKEERRA 215
RKEER +
Sbjct: 206 RKEERES 212
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/481 (66%), Positives = 373/481 (77%), Gaps = 28/481 (5%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++NDKQ+FVG FLRK+ERE+ A K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVM
Sbjct: 198 VLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVM 257
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDGDGKS+CFGFVNFEN +DAA+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ
Sbjct: 258 RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG 317
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ +KF GLNLY+KNL D++ DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS
Sbjct: 318 SSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSA 377
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
EASR L EMNGKM+ KPLYVA+AQRKEERRA+LQAQFSQMRP A P V PRMP++
Sbjct: 378 ASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFT 436
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF-VPVVSQGQQGQR 300
G GLGQQ YGQ PP IIP Q GFGYQ QLVPGMRPA FF P++ GQQG R
Sbjct: 437 GGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPA------FFGGPMMQPGQQGPR 490
Query: 301 PGGRR-GAGPV-QQTQQPLPIMPHQMPPRGHAYRYPL-GRNMQDFPFDMGAGSMLPVPVD 357
PGGRR G GP+ Q QQP+P M QM PRG YRYP GRNM D P G M+PV D
Sbjct: 491 PGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYD 547
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
M +P QPM L+T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGML
Sbjct: 548 MNV-MP-----YSQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGML 601
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ--------QQANNPADQLASLSLNEN 469
LEMDQTEVLHLLESPEAL AKV+EA++VLR+V Q ++ +P+D LASLS+N++
Sbjct: 602 LEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSDGNKSGSPSDLLASLSINDH 661
Query: 470 L 470
L
Sbjct: 662 L 662
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L + F GTI S V D G+S+ +GFV F+ D A A+E L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NGK +D++ +VG +K ERE DK + N+Y+KNL ++ D++LK
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERE------------SAADKMKFTNVYVKNLSEATTDDELK 242
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F ++G+I+S VMRD G S+ GFV F PE+A+RA+ +NGK K YV AQ+
Sbjct: 243 TTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 302
Query: 210 KEERRARLQAQFSQ 223
K ER L ++ Q
Sbjct: 303 KSERELELSRRYEQ 316
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L F E + S V RD S +G+VN+ N DDA KA++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + S + G NL++KNL S+D++ L
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVG----------------NLFVKNLDKSVDNKTL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS GTI SCKV D G S+G GFV F T + A A+ ++NGK++ K ++V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL 210
Query: 209 RKEERRA 215
RKEER +
Sbjct: 211 RKEERES 217
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/481 (66%), Positives = 373/481 (77%), Gaps = 28/481 (5%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++NDKQ+FVG FLRK+ERE+ A K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVM
Sbjct: 198 VLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVM 257
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDGDGKS+CFGFVNFEN +DAA+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ
Sbjct: 258 RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG 317
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ +KF GLNLY+KNL D++ DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS
Sbjct: 318 SSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSA 377
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
EASR L EMNGKM+ KPLYVA+AQRKEERRA+LQAQFSQMRP A P V PRMP++
Sbjct: 378 ASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFT 436
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF-VPVVSQGQQGQR 300
G GLGQQ YGQ PP IIP Q GFGYQ QLVPGMRPA FF P++ GQQG R
Sbjct: 437 GGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPA------FFGGPMMQPGQQGPR 490
Query: 301 PGGRR-GAGPV-QQTQQPLPIMPHQMPPRGHAYRYPL-GRNMQDFPFDMGAGSMLPVPVD 357
PGGRR G GP+ Q QQP+P M QM PRG YRYP GRNM D P G M+PV D
Sbjct: 491 PGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYD 547
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
M +P QPM L+T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGML
Sbjct: 548 MNV-MP-----YSQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGML 601
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ--------QQANNPADQLASLSLNEN 469
LEMDQTEVLHLLESPEAL AKV+EA++VLR+V Q ++ +P+D LASLS+N++
Sbjct: 602 LEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDH 661
Query: 470 L 470
L
Sbjct: 662 L 662
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L + F GTI S V D G+S+ +GFV F+ D A A+E L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NGK +D++ +VG +K ERE DK + N+Y+KNL ++ D++LK
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERE------------SAADKMKFTNVYVKNLSEATTDDELK 242
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F ++G+I+S VMRD G S+ GFV F PE+A+RA+ +NGK K YV AQ+
Sbjct: 243 TTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 302
Query: 210 KEERRARLQAQFSQ 223
K ER L ++ Q
Sbjct: 303 KSERELELSRRYEQ 316
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L F E + S V RD S +G+VN+ N DDA KA++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + S + G NL++KNL S+D++ L
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVG----------------NLFVKNLDKSVDNKTL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS GTI SCKV D G S+G GFV F T + A A+ ++NGK++ K ++V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL 210
Query: 209 RKEERRA 215
RKEER +
Sbjct: 211 RKEERES 217
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 308/472 (65%), Positives = 368/472 (77%), Gaps = 4/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQER+ KFNNV+VKNL E+TT++DLK+IFG++GTITS VV
Sbjct: 276 MLMNDKKVYVGPFVRKQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVV 335
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDG+SKCFGFVNFE+ D+AA AV+ LNGKKF D+EWYVG+AQKKSERE ELK +FE+
Sbjct: 336 MRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEK 395
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++E DK+Q NLY+KNL D++DDEKL+ELF+EFGTITSCKVMRD +G S+GSGFVAF
Sbjct: 396 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 455
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+ ++ASRALAEMN KM+ +KPLYVA+AQRKE+R+ARLQAQFSQMRPV M +V PRM M
Sbjct: 456 SADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML 515
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG +GQQ YGQ PPA I PQ GFG+QQ +PGMRP GAPMPNF +P+V QGQQ QR
Sbjct: 516 PPGVP-VGQQMFYGQ-PPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQR 573
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
P GRR Q + G YRYP GR M D P G G ++ P +MG
Sbjct: 574 PAGRRAGAGGMQQSMQMGQQQMMGRGGGRGYRYPTGRGMPD-PAMHGVGGVMTSPYEMG- 631
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA QP+PI AL++ALAN+ PE QR +LGE+LYPLV+QLE D AAKVTGMLLEM
Sbjct: 632 GMPMRDAGASQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEM 691
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESP+ALKAKVAEAMEV RS Q +P QLASLSLN+ L+S
Sbjct: 692 DQTEVLHLLESPDALKAKVAEAMEVFRSAQQHTNQSPEQQLASLSLNDGLIS 743
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V D G+SK +GFV +E + A
Sbjct: 209 KSGTANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHA 268
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E LNG +D++ YVG +K ER+ KF N+Y+KNL ++
Sbjct: 269 AIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV----------KFN--NVYVKNLAETTT 316
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ LKE+F +FGTITS VMRD G SK GFV F +P+EA+ A+ ++NGK K YV
Sbjct: 317 EDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYV 376
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F +
Sbjct: 377 GRAQKKSEREMELKEKFEK 395
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +LD S D L +F + G + S V RD KS + +VN+ DAA+A+E
Sbjct: 125 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 184
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R + S R+ L+ K N++IKNL SID++
Sbjct: 185 MLNFTPINGRPIRI----MYSNRDPSLR------------KSGTANIFIKNLDKSIDNKA 228
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + F FG I SCKV DP+G SKG GFV + E A A+ ++NG ++ K +YV
Sbjct: 229 LHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPF 288
Query: 208 QRKEER 213
RK+ER
Sbjct: 289 VRKQER 294
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L S+ D +L ++F++ G + S +V RD S S G +V ++TP +A+R
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I +P+ + + R R
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLR 208
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 314/476 (65%), Positives = 381/476 (80%), Gaps = 18/476 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK+VFVG F+RKQ+RE V+ KF+NV+VKNL ++ TD++LK++FG+YGTITSAVV
Sbjct: 186 MLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVV 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKS+CFGFVNFENAD AA+AV+ LNGK F+D+E YVG+AQKKSERE ELK +FE+
Sbjct: 246 MRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEK 305
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++E +KFQ NLY+KNL ++IDDEKL+ELF+E+G ITSCKVMRD +G+S+GSGFVAF
Sbjct: 306 NVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFK 365
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+ E+A+RAL EMNGKM+ SKPLYVA+AQRKE+R+A+LQAQFSQMRPVAM PSV PRMPM+
Sbjct: 366 SAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMF 425
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PPA I P QQ L+PGMRP G PMPNF +P+V QGQQ QR
Sbjct: 426 PPGVPGVGQQLFYGQPPPAFINP------QQPLMPGMRP-GGPMPNFMMPMVQQGQQPQR 478
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
P GRR G QQP+P+ Q P G YRYP GR M D P G+++P +M
Sbjct: 479 PAGRRAGG----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPD-PGMHSVGAVMPPSYEM 533
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G G+P R+A+ QP+PI AL+TALANA P+QQR +LGE+LYPLVEQLER+ AAKVTGMLL
Sbjct: 534 G-GMPMREAAP-QPVPIGALATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLL 591
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA--DQLASLSLNENLVS 472
EMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N + QLA+LSLN+ +VS
Sbjct: 592 EMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLSLNDGVVS 647
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +G I S + D G+S+ +GFV FE
Sbjct: 113 RDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEK 172
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A++ LNG +D++ +VG +K +RE + N+Y+KN
Sbjct: 173 DESAQSAIDKLNGMLINDKKVFVGPFVRKQDREN------------VSSNIKFSNVYVKN 220
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D++ D++LKE+F ++GTITS VMRD G S+ GFV F + A++A+ E+NGK+
Sbjct: 221 LSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFN 280
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K LYV AQ+K ER L+ +F +
Sbjct: 281 DKELYVGRAQKKSEREMELKEKFEK 305
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 88
+++V +L ES D L +F + G + S V RD + KS + +VN+ N DAA+A+E
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + + G N++IKNL SID++ L
Sbjct: 96 LNFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCK+ DPSG S+G GFV F E A A+ ++NG +I K ++V
Sbjct: 140 YDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFV 199
Query: 209 RKEER 213
RK++R
Sbjct: 200 RKQDR 204
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L +S+ D +L ++FS+ G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 328/478 (68%), Positives = 379/478 (79%), Gaps = 10/478 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQER+ K +FNNVFVKNL ESTT EDL KIF EYG ITSAVV
Sbjct: 188 MLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVV 247
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NFE+ DDA +AVE LNGKK +D+EWY G+AQKKSERE +LK +FEQ
Sbjct: 248 MVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQ 307
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QG NLY+KNL D I D++L+ELFS FG ITSCKVMRD +G+SKGSGFVAFS
Sbjct: 308 SMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFS 367
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+A+ EMNGKM+ KPLYVA AQRKEER+A LQAQFSQMRPV + PS+ PR+PMY
Sbjct: 368 TREEASQAITEMNGKMLSGKPLYVAFAQRKEERKAMLQAQFSQMRPVPITPSMTPRLPMY 427
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP + LGQQ YGQAPP ++PPQ GFG+QQQLVPGMRP+GA MPN+FVPVV QGQQG R
Sbjct: 428 PP-MAPLGQQLFYGQAPPPMMPPQPGFGFQQQLVPGMRPSGAHMPNYFVPVVQQGQQGPR 486
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYP--LGRNMQDF-PF-DMGAGSMLPVP 355
PG RR GAG VQ Q QM PRG YRYP GRNM + P +GAG M+ P
Sbjct: 487 PGMRRSGAGSVQGQQS-AQSYQQQMVPRGRVYRYPPGPGRNMPEVQPMAGVGAGGMIQ-P 544
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
DMG G P RDA + PI L++ALANA+P+QQRTLLGESLYPLVE LE + AAKVTG
Sbjct: 545 YDMG-GFPVRDAGLSPAAPIGTLTSALANATPDQQRTLLGESLYPLVELLEHNQAAKVTG 603
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA-NNPADQLASLSLNENLVS 472
MLLEMDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQ N P QLA LS+ ++++S
Sbjct: 604 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQNPNAPTSQLAGLSMTDSIIS 661
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ ++ L F +G I S V D G+SK FGFV +E + A A+++L
Sbjct: 126 NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSL 185
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ER+ + DK + N+++KNL +S E L
Sbjct: 186 NGMLINDKPVYVGPFLRKQERD------------NSFDKARFNNVFVKNLSESTTKEDLV 233
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++FSE+G ITS VM G S+ GF+ F +P++A RA+ E+NGK I K Y AQ+
Sbjct: 234 KIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQK 293
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 294 KSEREMDLKRRFEQ 307
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L+ S TD L ++F + G + S V RD + + S + +VNF N DAA+A+E
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEM 97
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ V + + + N++IKNL +ID++ L
Sbjct: 98 LNFVPLNNKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKTIDNKTL 141
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 142 HDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFL 201
Query: 209 RKEER 213
RK+ER
Sbjct: 202 RKQER 206
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V FS P +A+RAL
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEM 97
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + +KP+ V + R R
Sbjct: 98 LNFVPLNNKPIRVMYSNRDPSSR 120
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 330/478 (69%), Positives = 379/478 (79%), Gaps = 10/478 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQER+ + K KFNNVFVKNL ESTT EDL K+F EYGTITSAVV
Sbjct: 273 MLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVV 332
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGFVNFE+ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE +LK +FEQ
Sbjct: 333 MIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQ 392
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QG NLY+KNL D I D++L+ELFS FG ITSCK+MRD +G+SKGSGFV+FS
Sbjct: 393 SMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFS 452
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMI KPLYVA AQRKEER+A LQAQFSQMRPV M PS+ PR+PMY
Sbjct: 453 TREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMY 512
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRP-AGAPMPNFFVPVVSQGQQGQ 299
PP P+ LGQQ YGQAPPA++PPQ G+G+QQQLVPGMRP GA MPN+FVPVV GQQG
Sbjct: 513 PPMPT-LGQQLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGGGAHMPNYFVPVVQPGQQGP 571
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNM---QDFPFDMGAGSMLPVP 355
RPG RR Q QQ QM PRG YRYP G R+M Q P +G G M+ P
Sbjct: 572 RPGMRRSGPGSAQGQQTPQPFQQQMVPRGRVYRYPPGPRHMAEVQQMP-GVGVGGMVQ-P 629
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
DMG+ P RDA V PI L++ALANA+PEQQRT+LGESLYPLVE+LE AAKVTG
Sbjct: 630 YDMGS-FPVRDAGVSPAPPIGTLTSALANATPEQQRTILGESLYPLVEKLEHQQAAKVTG 688
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA-NNPADQLASLSLNENLVS 472
MLLEMDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQ N P QLA LSL++ ++S
Sbjct: 689 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQNPNAPTSQLAGLSLSDGIIS 746
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 16/221 (7%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+N+K + V + R+ + ++ N+F+KNLD++ ++ L F +G I S V
Sbjct: 188 LNNKPIRVMY----SNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAM 243
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G+SK FGFV +E + A A+++LNG +D+ YVG +K ER+
Sbjct: 244 DDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERD----------- 292
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+ DK + N+++KNL +S E L ++FSE+GTITS VM G S+ GFV F +P
Sbjct: 293 -NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESP 351
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
++A+RA+ E+NGK I K YV AQ+K ER L+ +F Q
Sbjct: 352 DDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQ 392
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
+++V +L+ + TD L ++F + G + S V RD + + S + +VN+ N DAA+A+E
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
ALN +++ V + + + N++IKNL +ID++
Sbjct: 182 ALNFAPLNNKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKTIDNKT 225
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 226 LHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPF 285
Query: 208 QRKEER 213
RK+ER
Sbjct: 286 LRKQER 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L ++ D +L ELFS+ G + S +V RD S S G +V +S P +A+RA+
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + +KP+ V + R R
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSR 205
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 324/476 (68%), Positives = 370/476 (77%), Gaps = 10/476 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK VFVG FLRKQER+ KTKFNNVFVKNL ESTT EDL KIFGEYG ITSAVV
Sbjct: 191 MLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVV 250
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NFEN D A++AV+ LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 251 MIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQ 310
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+K+ DK+QGLNLY+KNL DSI D++L+ELFS FG ITSCKVMRD +G+SKGSGFVAFS
Sbjct: 311 ILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFS 370
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP-VAMGPSVPPRMPM 239
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+A LQAQFSQMRP V M P++ PR+PM
Sbjct: 371 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPM 430
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF--VPVVSQGQQ 297
YPP QQ YGQAPPA+IPPQ GFG+QQQLVPGMRP G MPN+F V QGQQ
Sbjct: 431 YPPMAP---QQLFYGQAPPAMIPPQPGFGFQQQLVPGMRPGGPHMPNYFVPVVQHQQGQQ 487
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 357
G RPG RRGAG Q P Q+ PRG YRYP GRNM + P G + D
Sbjct: 488 GPRPGIRRGAGAQGQQPV--PPFQQQIVPRGRMYRYPTGRNMPEAPAMPGVAGGMMQAYD 545
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
MG G P RDA++ I L++ALANA+PEQQRT+LGE+LYPLVEQLE + AAKVTGML
Sbjct: 546 MG-GFPVRDAALSPAAQIGTLTSALANANPEQQRTILGENLYPLVEQLEPNQAAKVTGML 604
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 472
LEMDQTEVLHLLESP+ALK+KVAEAM+VL +VA QQ AN P QLA+LSL E ++S
Sbjct: 605 LEMDQTEVLHLLESPDALKSKVAEAMDVLHNVAHQQNANTPTSQLAALSLTEGIIS 660
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 124/222 (55%), Gaps = 16/222 (7%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+N+K + V + R+ + ++ N+F+KNLD+ ++ L + F +GTI S V
Sbjct: 106 LNNKPIRVMY----SNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAM 161
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G+SK FGFV +E + A A+++LNG +D+ +VG +K ER+
Sbjct: 162 DEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDH---------- 211
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+ DK + N+++KNL +S E L ++F E+G ITS VM G S+ GF+ F P
Sbjct: 212 --SFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENP 269
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 224
+ ASRA+ E+NGK I K YV AQ+K ER L+ +F Q+
Sbjct: 270 DAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQI 311
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ S +D L ++F + G + S V RD +S + +VNF N DAA+A+E
Sbjct: 41 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEV 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ V + + + N++IKNL ID++ L
Sbjct: 101 LNFAPLNNKPIRVMYSNRDPSSRRSGSA----------------NIFIKNLDKMIDNKSL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D G SKG GFV + E A A+ +NG +I KP++V
Sbjct: 145 HETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFL 204
Query: 209 RKEER 213
RK+ER
Sbjct: 205 RKQER 209
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ELFS+ G + S +V RD S S G +V F+ P +A+RAL
Sbjct: 41 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEV 100
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + +KP+ V + R R
Sbjct: 101 LNFAPLNNKPIRVMYSNRDPSSR 123
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 332/475 (69%), Positives = 388/475 (81%), Gaps = 13/475 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QER++ KT F NV+VKNL ESTTD+DLK IFGE+G ITSAVV
Sbjct: 191 MLLNDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVV 250
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DG+GK K FGFVNFENADDAAKAVE+LNGK FDD+EW+VG+AQKKSERE ELK Q+EQ
Sbjct: 251 MKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQ 310
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++KE DKFQ NLY+KNL DS+ DEKLKELF+ +GT+TSCKVMRDP+G+S+GSGFVAFS
Sbjct: 311 SLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFS 370
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA++A++EM+GKMI +KPLYVAVAQRKE+RRARLQAQFSQMRPVAM P V PRMP+Y
Sbjct: 371 TPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFSQMRPVAMPPPVGPRMPIY 430
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQ YGQAPP +I Q GFGYQQQLVPGMRP GAPM NFF+P+V QGQ QR
Sbjct: 431 PPGGPGIGQPMFYGQAPPTMISSQPGFGYQQQLVPGMRPGGAPMHNFFMPMVQQGQ--QR 488
Query: 301 PGGRRGAG---PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 357
PGGR G QQ Q P+ HQM PRG +RYP GR P G +P +
Sbjct: 489 PGGRHPGGIQQSQQQQQVPMMQQQHQMHPRGRMFRYPQGRGSGGPPDVPGM-----LPYE 543
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
MG+ +P RD + Q +PI AL+++LANA+PE QRTLLGE+LYPLVEQLE ++AAKVTGML
Sbjct: 544 MGSNMPLRDPVLSQHVPIGALASSLANAAPELQRTLLGENLYPLVEQLEAESAAKVTGML 603
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
LEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA A A+QLASL+LN+NLVS
Sbjct: 604 LEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGSAEQLASLNLNDNLVS 655
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ ++ N+F+KNLD+S + L F +G I S V D G+SK +GFV +E
Sbjct: 117 HRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYE 176
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+ LNG +D++ YVG ++ ER+ T +K N+Y+K
Sbjct: 177 TEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERD------------STGNKTIFTNVYVK 224
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S D+ LK +F EFG ITS VM+D G KG GFV F ++A++A+ +NGK
Sbjct: 225 NLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTF 284
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K +V AQ+K ER L+ Q+ Q
Sbjct: 285 DDKEWFVGRAQKKSEREMELKVQYEQ 310
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +LD + TD L F + G + S V RD +S +G+VNF + DAA+A++
Sbjct: 40 TSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQ 99
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + V + + + G N++IKNL SID +
Sbjct: 100 ELNYIPLNGKPVRVMYSHRDPSVRRSGAG----------------NIFIKNLDKSIDHKA 143
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV D SG SKG GFV + T E A +A+ ++NG ++ K +YV
Sbjct: 144 LHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPF 203
Query: 208 QRKEER 213
R++ER
Sbjct: 204 LRRQER 209
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++ D +L + FS+ G + S +V RD + S G G+V F++P++A+
Sbjct: 36 QFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAA 95
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
RA+ E+N + KP+ V + R R
Sbjct: 96 RAIQELNYIPLNGKPVRVMYSHRDPSVR 123
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 314/467 (67%), Positives = 372/467 (79%), Gaps = 24/467 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVV
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM PSV PRMP+Y
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVY 426
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQAPPA+IPPQ G+GYQQQLVPGMRP G P+P+FF+P+V QQ
Sbjct: 427 PPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG 486
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
R G +Q +QQ P+M QM PRG +RYP GR G +P P DMG
Sbjct: 487 G--GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGDVP-PYDMGN 534
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+ P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEM
Sbjct: 535 NM---------PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEM 585
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 467
DQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+
Sbjct: 586 DQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLDES + L F +G I S V D G+SK +GFV + N + A KA+E L
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG ++ ER+ T +K + N+Y+KNL +S D+ LK
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERD------------STANKTKFTNVYVKNLAESTTDDDLK 232
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F E+G ITS VM+D G SKG GFV F ++A+RA+ +NG K YV AQ+
Sbjct: 233 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 210 KEERRARLQAQFSQ 223
K ER L+ ++ Q
Sbjct: 293 KSERETELRVRYEQ 306
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 23 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 28 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 87
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DAA+A++ LN + V + + + G N++IKNL
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNL 131
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 200 KPLYVAVAQRKEER 213
K +YV R++ER
Sbjct: 192 KQVYVGPFLRRQER 205
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 314/467 (67%), Positives = 372/467 (79%), Gaps = 24/467 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVV
Sbjct: 171 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 230
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ
Sbjct: 231 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 290
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+
Sbjct: 291 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 350
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM PSV PRMP+Y
Sbjct: 351 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVY 410
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQAPPA+IPPQ G+GYQQQLVPGMRP G P+P+FF+P+V QQ
Sbjct: 411 PPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG 470
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
R G +Q +QQ P+M QM PRG +RYP GR G +P P DMG
Sbjct: 471 G--GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGDVP-PYDMGN 518
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+ P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEM
Sbjct: 519 NM---------PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEM 569
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 467
DQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+
Sbjct: 570 DQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 613
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLDES + L F +G I S V D G+SK +GFV + N + A KA+E L
Sbjct: 109 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 168
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG ++ ER+ T +K + N+Y+KNL +S D+ LK
Sbjct: 169 NGMLLNDKQVYVGPFLRRQERD------------STANKTKFTNVYVKNLAESTTDDDLK 216
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F E+G ITS VM+D G SKG GFV F ++A+RA+ +NG K YV AQ+
Sbjct: 217 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 276
Query: 210 KEERRARLQAQFSQ 223
K ER L+ ++ Q
Sbjct: 277 KSERETELRVRYEQ 290
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 23 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 12 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 71
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DAA+A++ LN + V + + + G N++IKNL
Sbjct: 72 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNL 115
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 116 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 175
Query: 200 KPLYVAVAQRKEER 213
K +YV R++ER
Sbjct: 176 KQVYVGPFLRRQER 189
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 337/450 (74%), Positives = 378/450 (84%), Gaps = 23/450 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG F+RKQERE+ K KFNNVFVKN+ E T+EDL +IFGE+G ITS VV
Sbjct: 320 MLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVV 379
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKSKCFGFVNFEN DDAA +VEALNG+KFDD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 380 MRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQ 439
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
MKE VDKFQG NLYIKNL DSI D+KLKELF++FGTITSCKVMRDP+G+S+GSGFVAFS
Sbjct: 440 NMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFS 499
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEASRALAEMN KM+VSKPLYVA+AQRKE+RRARLQAQFSQMRPV M PSV PR+PMY
Sbjct: 500 SPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMY 559
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP GLGQQ YGQAPPAIIPPQ GFGYQQQLVPGMRPAG PMPNFFVP+V QGQQGQR
Sbjct: 560 PPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQR 619
Query: 301 PGGRR-GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
PGGRR GA P+QQTQQ +P+M QM PRG +RYP GR + D +P+P
Sbjct: 620 PGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSD----------VPMP---- 665
Query: 360 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
++ Q +P+ AL+TALANA P +QRT+LGE+LYPLVEQLE + AAKVTGMLLE
Sbjct: 666 --------AISQSIPVGALATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLE 717
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
MDQTEVLHLLESP+ALKAKVAEAMEVLR+V
Sbjct: 718 MDQTEVLHLLESPDALKAKVAEAMEVLRNV 747
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+ + L F +G I S V D G SK GFV F++ + A K
Sbjct: 253 KSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQK 312
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ +VG +K ERE T++K + N+++KN+ + +
Sbjct: 313 AIDKLNGMLLNDKQVFVGPFVRKQERE------------STINKEKFNNVFVKNISEGMT 360
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+E L +F EFG ITS VMRD G SK GFV F ++A+ ++ +NG+ K YV
Sbjct: 361 EEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYV 420
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+++F Q
Sbjct: 421 GKAQKKSEREIELKSRFEQ 439
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 88
+++V +LD + TD L +F + + S V RD +S +G+VN+ + +DAA+A++
Sbjct: 170 SLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDV 229
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + + G N++IKNL ID + L
Sbjct: 230 LNFTPLNGKPIRIMYSHRDPSIRKSGTG----------------NIFIKNLDKGIDHKAL 273
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG+SKG GFV F + E A +A+ ++NG ++ K ++V
Sbjct: 274 HDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFV 333
Query: 209 RKEERRARLQAQ 220
RK+ER + + +
Sbjct: 334 RKQERESTINKE 345
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + D L +F + G + S V RD +S +G+VN+ N D +
Sbjct: 31 SLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETI 90
Query: 89 LNGKK------------FDDREWYVGKAQKKSEREQELKGQ----------------FEQ 120
G F Y+ K ++ ER EL+ + E
Sbjct: 91 YEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHEG 150
Query: 121 AMKETVD-------KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SK 172
+ T D +F +LY+ +L ++ D +L +LFS+ + S +V RD + S
Sbjct: 151 LLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSL 210
Query: 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
G G+V ++ E+A+RAL +N + KP+ + + R
Sbjct: 211 GYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHR 247
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEE 184
+F +LY+ +L +++D +L +LFS+ G + S +V RD S S G G+V +S P++
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQD 83
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 307/472 (65%), Positives = 367/472 (77%), Gaps = 4/472 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQER+ KFNNV+VKNL E+TT++DLK+IFG++G ITS VV
Sbjct: 183 MLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVV 242
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDG+SKCFGFVNFE+ D+AA AV+ LNGKKF D+EWYVG+AQKKSERE ELK +FE+
Sbjct: 243 MRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEK 302
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++E DK+Q NLY+KNL D++DDEKL+ELF+EFGTITSCKVMRD +G S+GSGFVAF
Sbjct: 303 NLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFK 362
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+ ++ASRALAEMN KM+ +KPLYVA+AQRKE+R+ARLQAQFSQMRPV M +V PRM M
Sbjct: 363 SADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML 422
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG +GQQ YGQ PPA I PQ GFG+QQ +PGMRP GAPMPNF +P+V QGQQ QR
Sbjct: 423 PPGVP-VGQQMFYGQ-PPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQR 480
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
P GRR Q + G YRY GR M D P G G ++ P +MG
Sbjct: 481 PAGRRAGAGGMQQSMQMGQQQMLGRGGGRGYRYQTGRGMPD-PAMHGVGGVMTSPYEMG- 538
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA QP+PI AL++ALAN+ PE QR +LGE+LYPLV+QLE D AAKVTGMLLEM
Sbjct: 539 GMPMRDAGESQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEM 598
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
DQTEVLHLLESP+ALKAKVAEAMEVLRS Q +P QLASLSLN+ L+S
Sbjct: 599 DQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLNDGLIS 650
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 12/199 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V D G+SK +GFV +E + A
Sbjct: 116 KSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHA 175
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E LNG +D++ YVG +K ER+ G KF N+Y+KNL ++
Sbjct: 176 AIEKLNGMLMNDKKVYVGPFVRKQERDNS-PGNV---------KFN--NVYVKNLAETTT 223
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ LKE+F +FG ITS VMRD G SK GFV F +P+EA+ A+ ++NGK K YV
Sbjct: 224 EDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYV 283
Query: 205 AVAQRKEERRARLQAQFSQ 223
AQ+K ER L+ +F +
Sbjct: 284 GRAQKKSEREIELKEKFEK 302
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G + S V RD KS + +VN+ DAA+A+E
Sbjct: 33 SLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEM 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + S R+ L+ K N++IKNL SID++ L
Sbjct: 93 LNFTPINGRPIRI----MYSNRDPSLR------------KSGTANIFIKNLDKSIDNKAL 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCKV DP+G SKG GFV + E A A+ ++NG ++ K +YV
Sbjct: 137 YDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFV 196
Query: 209 RKEER 213
RK+ER
Sbjct: 197 RKQER 201
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L S+ D +L ++F++ G + S +V RD S S G +V ++TP +A+R
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I +P+ + + R R
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLR 115
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 320/476 (67%), Positives = 380/476 (79%), Gaps = 10/476 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQERE V KFNNV+VKNL ESTT+++LK++FG++G ITS +V
Sbjct: 193 MLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIV 252
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+R DGKS+CFGFVNFEN DDAA+AVE LNGKK DD+E YVG+AQKKSERE +LK +FE+
Sbjct: 253 VRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEK 312
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDD-EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ KET DK QG NLY+KNL S+DD EKLKELF+EFGTITSCKVMRD +G++KGSGFVAF
Sbjct: 313 SNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAF 372
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ E+ASRAL MNGKM+ SKPLYVA+AQRKEERRARLQAQFSQMRPV M P V PRMPM
Sbjct: 373 KSSEDASRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMRPVVMPPPVAPRMPM 432
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
YPPG G+GQQ YGQ PP + PQ GFG+QQ ++PGMRP APMPNF +P+V QGQQ Q
Sbjct: 433 YPPGVPGMGQQMFYGQPPPPFVNPQPGFGFQQHMIPGMRPGVAPMPNFVMPMVQQGQQPQ 492
Query: 300 RPGGRR-GAGPVQQTQQPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPV 356
RP GRR GAG + QQP+P+ QM PRG YRY GR M D PF G G M+P P
Sbjct: 493 RPSGRRAGAGGM---QQPMPMGHQQMLPRGGRGGYRYASGRGMPDSPF-RGVGGMVPSPY 548
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
+MG + D Q +P L++ALAN+ PEQQR +LGESLYPLV+QLE D AAKVTGM
Sbjct: 549 EMGR-MTLNDNGAPQQVPSGTLASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGM 607
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
LLEMDQTEVLHL+ESP+ALK+KVAEAM+VLRS AQQQ + PADQLA+LSL++ V+
Sbjct: 608 LLEMDQTEVLHLIESPDALKSKVAEAMDVLRS-AQQQTSAPADQLAALSLSDGFVA 662
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +GTI S V + G+SK +GFV +E
Sbjct: 120 RDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATEISGESKGYGFVQYEQ 179
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+ LNG +D++ YVG +K ERE KF N+Y+KN
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSP----------KFN--NVYVKN 227
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S ++ LKE+F +FG ITS V+R G S+ GFV F P++A+RA+ ++NGK +
Sbjct: 228 LSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLD 287
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K LYV AQ+K ER +L+ +F +
Sbjct: 288 DKELYVGRAQKKSEREMQLKEKFEK 312
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 99/186 (53%), Gaps = 19/186 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G++ S V RD + + S + +VNF + DAA+A+E
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEM 102
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + + + + S R K N++IKNL SID++
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSR-----------------KSGAANIFIKNLDKSIDNKA 145
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FGTI SCKV + SG SKG GFV + E A A+ E+NG ++ K +YV
Sbjct: 146 LFDTFSAFGTILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPF 205
Query: 208 QRKEER 213
RK+ER
Sbjct: 206 VRKQER 211
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+RA+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEM 102
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + KP+ + + R R
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSR 125
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 321/467 (68%), Positives = 370/467 (79%), Gaps = 28/467 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVV
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DGDGKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ
Sbjct: 247 MKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TSCKVMRDP+G SKGSGFVAFS
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFS 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR AQFSQ+RPVAM PSV PRMP+Y
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR----AQFSQVRPVAMQPSVGPRMPVY 422
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQ PP +IPPQ GFGYQQQLVPGMRP G P PNFF+P+V Q QQ
Sbjct: 423 PPGGPGIGQQMFYGQGPPTMIPPQPGFGYQQQLVPGMRPGGGPGPNFFMPMVQQQQQRPG 482
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
R G +Q QQ P+M QM PRG +RYP GR G +P P DMG
Sbjct: 483 G--GRRPGGIQHPQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGEVP-PYDMGN 530
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+ P+PI AL++ LANASPEQQRT+LGESLYPLVEQLE ++AAKVTGMLLEM
Sbjct: 531 NM---------PLPIGALASHLANASPEQQRTMLGESLYPLVEQLEAESAAKVTGMLLEM 581
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 467
DQTEVLHLLESPEALKAKVAEAM+VLRSVA A A+QLASL+L+
Sbjct: 582 DQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGAAEQLASLNLS 625
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLDES + L F +G I S V D G+SK +GFV + N + A KA+E L
Sbjct: 125 NIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG ++ ER+ T +K + N+Y+KNL +S D+ LK
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERD------------STANKTKFTNVYVKNLAESTTDDDLK 232
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F E+G ITS VM+D G SKG GFV F ++A+RA+ +NG K YV AQ+
Sbjct: 233 NAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 210 KEERRARLQAQFSQ 223
K ER L+ ++ Q
Sbjct: 293 KSERETELRVRYEQ 306
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +LD + TD L F + G + S V RD +S +G+VNF N DAA+A++
Sbjct: 36 TSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQ 95
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + V + + + G N++IKNL +SID +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNLDESIDHKA 139
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++ K +YV
Sbjct: 140 LHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPF 199
Query: 208 QRKEER 213
R++ER
Sbjct: 200 LRRQER 205
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPE 183
T F +LY+ +L ++ D +L + FS+ G + S +V RD + S G G+V F+ P+
Sbjct: 29 TAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQ 88
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A+RA+ E+N + KP+ V + R R
Sbjct: 89 DAARAIQELNYIPLYGKPIRVMYSHRDPSVR 119
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 331/475 (69%), Positives = 376/475 (79%), Gaps = 15/475 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLRKQER+T KT+FNNVFVKNL E+T +EDL K FGE+GTITS VV
Sbjct: 176 MLLNDKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVV 235
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKS+CFGFVNFENADDAAKA EALNGKKFDD+EW+VGKAQKK ERE ELK +FEQ
Sbjct: 236 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 295
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DKFQG NLYIKNL DSI DEK+KELFS FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 296 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 355
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ----AQFSQMRPVAMGPSVPPR 236
TPEEASRAL EMNGKM+ SKPLYVA+AQRKE+RRARL Q + + P
Sbjct: 356 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLSFLKCDQLQWHLQLVVCQCTPLL 415
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
+P+ L ++ +A P+ GFGYQQQLVPGMRP GAPMPNFFVP+V Q
Sbjct: 416 VPV-------LDNKYSMDKAHLLSCHPRLPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQ- 467
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
Q + G R AG QQ+QQP+ +M QM PRG YRYP GR + D P AG ML VP
Sbjct: 468 GQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVP 527
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
DMG G+P RDA++ QP+PI AL+TALANA+P+QQRT+LGE+LYPLVEQLE +AAAKVTG
Sbjct: 528 YDMG-GMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTG 586
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENL 470
MLLEMDQTEVLHLLESPEALK+KV EAMEVLR+V QQQA ADQLASLSLN+NL
Sbjct: 587 MLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTV-QQQATGTADQLASLSLNDNL 640
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD++ + L F +G I S V D G+SK +GFV F+
Sbjct: 102 HRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFD 161
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ + A KA+E LNG +D++ YVG +K ER+ DK + N+++K
Sbjct: 162 SEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERD------------TATDKTRFNNVFVK 209
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ +E L + F EFGTITS VMRD G S+ GFV F ++A++A +NGK
Sbjct: 210 NLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKF 269
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K +V AQ+K ER L+ +F Q
Sbjct: 270 DDKEWFVGKAQKKYEREVELKQRFEQ 295
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + TD L +F + G + S V RD +S +G+VN+ N DAA+A+E
Sbjct: 26 SLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEV 85
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + V + + +V K N++IKNL +ID + L
Sbjct: 86 LNFTPVNGSPIRVMYSHRDP----------------SVRKSGAGNIFIKNLDKAIDHKAL 129
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV DPSG SKG GFV F + E A +A+ ++NG ++ K +YV
Sbjct: 130 HDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFL 189
Query: 209 RKEER 213
RK+ER
Sbjct: 190 RKQER 194
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L ++ D +L +LF++ G + S +V RD S S G G+V +S P++A+R
Sbjct: 22 FVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAAR 81
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N + P+ V + R R
Sbjct: 82 ALEVLNFTPVNGSPIRVMYSHRDPSVR 108
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 323/410 (78%), Positives = 353/410 (86%), Gaps = 4/410 (0%)
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRDGDGKS+CFGFVNFENADDAAKA EALNGKKFDD+EW+VGKAQKK ERE ELK +FEQ
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 60
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKE DKFQG NLYIKNL DSI DEK+KELFS FGTITSCKVMRDP+GIS+GSGFVAFS
Sbjct: 61 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 120
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL EMNGKM+ SKPLYVA+AQRKE+RRARLQAQFSQMRPVAM PSV RMPMY
Sbjct: 121 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSV-GRMPMY 179
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PP GLGQQ YGQ PPAI+PPQ GFGYQQQLVPGMRP GAPMPNFFVP+V QGQQGQR
Sbjct: 180 PPTGPGLGQQIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQR 239
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
G R AG QQ+QQP+ +M QM PRG YRYP GR + D P AG ML VP DMG
Sbjct: 240 -PGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMG- 297
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P RDA++ QP+PI AL+TALANA+P+QQRT+LGE+LYPLVEQLE +AAAKVTGMLLEM
Sbjct: 298 GMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEM 357
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENL 470
DQTEVLHLLESPEALK+KV EAMEVLR+V QQQA ADQLASLSLN+NL
Sbjct: 358 DQTEVLHLLESPEALKSKVNEAMEVLRTV-QQQATGTADQLASLSLNDNL 406
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 14/131 (10%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+DK+ FVG +K ERE V +K +F N+++KNLD+S DE +K++F
Sbjct: 34 FDDKEWFVGKAQKKYERE-VELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELF 92
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITS VMRD +G S+ GFV F ++A++A+ +NGK + YV AQ+K +
Sbjct: 93 SPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKED 152
Query: 110 REQELKGQFEQ 120
R L+ QF Q
Sbjct: 153 RRARLQAQFSQ 163
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/473 (62%), Positives = 337/473 (71%), Gaps = 49/473 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQERE KTKFNNVFVKNL ESTT EDL KIFG YG ITSAV+
Sbjct: 189 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI 248
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NF++ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 249 MVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQ 308
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QGLNLY+KNL DSI D++L ELFS +G ITSCK+MRD +G+SKGSGFVAFS
Sbjct: 309 SMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFS 368
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+A L
Sbjct: 369 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAML----------------------- 405
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
Q GFG+QQQLVPGMRP GA MPN+FVPVV QGQQG R
Sbjct: 406 -----------------------QPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPR 442
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PG RR Q QQ QM PRG YRYP NM D P G + DMG
Sbjct: 443 PGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMG- 501
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G P RDA + P PI L++ALANA+PEQQRT+LGESLYPLVE LE++ AAKVTGMLLEM
Sbjct: 502 GFPVRDAGL-SPAPIGTLTSALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEM 560
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ-ANNPADQLASLSLNENLVS 472
DQTEVLHLLESPEALK+KVAEAM+VLR+VAQQ AN P QLA+LSL + ++S
Sbjct: 561 DQTEVLHLLESPEALKSKVAEAMDVLRNVAQQHNANTPTSQLAALSLGDAIIS 613
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ + L F +G I S V D G+SK FGFV ++ + A A+++L
Sbjct: 127 NIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ERE +VDK + N+++KNL +S E L
Sbjct: 187 NGMLINDKPVYVGPFLRKQEREN------------SVDKTKFNNVFVKNLSESTTKEDLV 234
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++F +G ITS +M G S+ GF+ F +P++A+RA+ E+NGK I K YV AQ+
Sbjct: 235 KIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQK 294
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 295 KSEREIELKRRFEQ 308
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ S TD L + F G + S V RD G+S +VNF N DAA+A+E
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + V + + + N++IKNL +ID + L
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSRRS----------------GSANIFIKNLDKAIDHKTL 142
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 143 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 202
Query: 209 RKEER 213
RK+ER
Sbjct: 203 RKQER 207
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L S+ D +L E F G + S +V RD G S G +V F+ P +A+RAL
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + KP+ V + R R
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSR 121
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 290/428 (67%), Positives = 333/428 (77%), Gaps = 9/428 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQER+ K KFNNVFVKNL ESTT +DL K+F YGTITSAVV
Sbjct: 74 MLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGTITSAVV 133
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CF FVNFE+ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE +LK +FEQ
Sbjct: 134 MIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQ 193
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QG NLY+KNL D I D++L+ELFS FG ITSCK+MRD +G+SKGSGFV+FS
Sbjct: 194 SMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFS 253
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+A LQAQFSQMRPV M PS+ PR+PMY
Sbjct: 254 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPVPMTPSMTPRLPMY 313
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRP-AGAPMPNFFVPVVSQGQQGQ 299
PP P+ LGQQ YGQAPPA++PPQ G+G+QQQLVPGMRP GA MPN+FVPVV GQQG
Sbjct: 314 PPMPT-LGQQLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGGGAHMPNYFVPVVQPGQQGP 372
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-RNM---QDFPFDMGAGSMLPVP 355
RPG RR Q QQ QM PRG YRYP G R+M Q P +G G M+ P
Sbjct: 373 RPGIRRNGPGSAQGQQTPQPFQQQMVPRGCVYRYPPGPRHMPEVQQMP-GVGVGGMVQ-P 430
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
DMG+ P RDA V PI L++ALANA+PEQQRT+LGESLYPLVE+LE AAKVTG
Sbjct: 431 YDMGS-FPVRDAGVSPAPPIGTLTSALANATPEQQRTILGESLYPLVEKLEHQQAAKVTG 489
Query: 416 MLLEMDQT 423
MLLEMDQT
Sbjct: 490 MLLEMDQT 497
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ ++ L F +G I S V D G+SK FGFV +E + A A+++L
Sbjct: 12 NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSL 71
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ER+ + DK + N+++KNL +S + L
Sbjct: 72 NGMLINDKPVYVGPFLRKQERD------------NSFDKAKFNNVFVKNLSESTTKDDLV 119
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++FS +GTITS VM G S+ FV F +P++A+RA+ E+NGK I K YV AQ+
Sbjct: 120 KVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQK 179
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 180 KSEREMDLKRRFEQ 193
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 305/483 (63%), Positives = 370/483 (76%), Gaps = 27/483 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG F+R+QER+ + +KFNNV+VKNL +STTD++LKK+F YG I+SAVV
Sbjct: 175 MLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +GKSKCFGFVNFE+ADDAAKAVEALNGKKFD++EWYVG+AQKKSERE EL+ +FEQ
Sbjct: 235 MRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE ++K+QG+NLY+KNL D+IDDEKL+E+FSE+GTI SCKVMRDP G S+GSGFVAFS
Sbjct: 295 ERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+P+EA+RA+ EMNGKM+ SKPLYVA+AQRKEERR RLQA F+Q PV GP+VP +PMY
Sbjct: 355 SPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPV--GPAVPTSLPMY 412
Query: 241 PPGPSGLGQQF-LYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFF----VPVVSQ 294
P G+G YGQ PP IP Q A FGYQ QL+ RP GA PN+ VP + Q
Sbjct: 413 HPAGPGMGPGMSYYGQHPPGPIPLQPAAFGYQPQLI---RPGGAQFPNYMGFPNVPPLRQ 469
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG--HAYRYPL-GRNMQD--FPFDMGAG 349
GQQGQR GGRRG P QQ Q QM RG +RY RN D P G
Sbjct: 470 GQQGQRAGGRRGGAPQQQQPQ------QQMIQRGGNRNFRYTTNARNTPDVAVPPQGIMG 523
Query: 350 SMLPVPVDMGAGIPRRDASVG---QPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 406
+MLPVP+++G G+P +A G QP+PI+AL++ALA+A PEQQR +LGE LYPLV+QLE
Sbjct: 524 AMLPVPIEIG-GVPVANADAGVPQQPLPISALASALASAPPEQQRAMLGEQLYPLVDQLE 582
Query: 407 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 466
D A KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VLR +AQ + P DQL +L++
Sbjct: 583 HDFAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLR-MAQAVPSPPTDQLGNLAI 641
Query: 467 NEN 469
++
Sbjct: 642 GDS 644
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +GTI S V D G+SK +GFV FE + A
Sbjct: 108 KSGTANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQT 167
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D++ +VG ++ ER+Q V KF N+Y+KNL DS
Sbjct: 168 AIEKVNGMLLNDKQVFVGPFVRRQERDQ----------SGVVSKFN--NVYVKNLADSTT 215
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++LK++F +G I+S VMRD G SK GFV F ++A++A+ +NGK K YV
Sbjct: 216 DDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYV 275
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A+F Q R
Sbjct: 276 GRAQKKSEREAELRAKFEQER 296
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + ++ L +IF + G + S V RD +S + +VN+ NA DA +A+E
Sbjct: 25 SLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALEL 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 85 LNFNAVNGKPIRIMFSHRDP----------------SIRKSGTANIFIKNLDKSIDNKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGTI SCKV DPSG SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 129 HDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFV 188
Query: 209 RKEER 213
R++ER
Sbjct: 189 RRQER 193
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L ++ + +L E+FS+ G + S +V RD + S G +V ++ ++A+R
Sbjct: 21 FVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATR 80
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N + KP+ + + R
Sbjct: 81 ALELLNFNAVNGKPIRIMFSHR 102
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 294/477 (61%), Positives = 362/477 (75%), Gaps = 18/477 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG F+R+QER+ +KFNNV+VKNL E+TT++DLK +FG YGTI+SAVV
Sbjct: 179 MLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVV 238
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFE+ D+AAKAVEALNGKK D++EWYVG+AQKKSERE EL+ +FEQ
Sbjct: 239 MRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQ 298
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE ++K+QG+NLY+KNL D++DDEKL+ELF+++GTITSCKVMRDP G S+GSGFVAFS
Sbjct: 299 ERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFS 358
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEA+RA+ EMNGKM+ SKPLYVA+AQRKEERRARLQA F+QMR ++ P+VP +PMY
Sbjct: 359 SPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQMR-TSVSPAVPTSLPMY 417
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFF----VPVVSQG 295
PGP Q YGQ P IP Q A FGYQ Q++ RP GA PN+ VP+
Sbjct: 418 HPGPGMSPQMPYYGQHPSGPIPLQPAAFGYQPQII---RPGGAQFPNYIGYANVPLRQGQ 474
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD--FPFDMGAGSMLP 353
Q + GGRRG P QQ QQ M + R Y P RNM D P G+M+P
Sbjct: 475 QGQRA-GGRRGGAPQQQQQQLQQQMIQRGGNRNLRYT-PNARNMPDTAVPPQGIMGAMVP 532
Query: 354 VPVDMGAGIPRRDASVG---QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
VP+++G G+P + G QP+PI+AL++ALA+A PEQQR +LGE LYPLV+QLE D A
Sbjct: 533 VPLEIG-GLPVANVDSGVPQQPLPISALASALASAPPEQQRAMLGEQLYPLVDQLEHDYA 591
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 467
KVTGMLLEMDQTEVLHL+ESPEAL+AKVAEAM+VLR +AQ P D+L +LS++
Sbjct: 592 GKVTGMLLEMDQTEVLHLIESPEALRAKVAEAMDVLR-MAQAAPVAPTDELGNLSIS 647
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD++ ++ L F +G I S V DG G+SK +GFV FE + A
Sbjct: 112 KSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALT 171
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D++ +VG ++ ER+Q V KF N+Y+KNLG++
Sbjct: 172 AIEKVNGMLLNDKQVFVGPFVRRQERDQ----------SGGVSKFN--NVYVKNLGENTT 219
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ LK +F +GTI+S VMRD G SK GFV F P+ A++A+ +NGK K YV
Sbjct: 220 EDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYV 279
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A+F Q R
Sbjct: 280 GRAQKKSEREAELRAKFEQER 300
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + ++ L ++F + G + S V RD +S + +VN+ +A DA +A+E
Sbjct: 29 SLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALEL 88
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + ++ K N++IKNL +ID++ L
Sbjct: 89 LNFSVLNGNPIRIMFSHRDP----------------SIRKSGTANIFIKNLDKTIDNKAL 132
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 133 HDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFV 192
Query: 209 RKEER 213
R++ER
Sbjct: 193 RRQER 197
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L ++ + +L ELF++ G + S +V RD + S G +V +++ ++A+R
Sbjct: 25 FVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATR 84
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N ++ P+ + + R
Sbjct: 85 ALELLNFSVLNGNPIRIMFSHR 106
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 286/480 (59%), Positives = 347/480 (72%), Gaps = 22/480 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG F+R QER KF NV+VKNL E+TTD+DLK IFG+YG+ITSAVV
Sbjct: 624 MLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVV 683
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFE 119
MRD G SKCFGFVNF+++D AA AVE LNG F DD+ WYVGKAQ+KSERE EL+ +FE
Sbjct: 684 MRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFE 743
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q K +KF+G NLY+KNL DS++DEKLKELFSEFGTITSCKVM DP G+SKGSGFVAF
Sbjct: 744 QERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAF 803
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP 238
TPEEA+RAL MNGKMI KPLYVAVAQRKEER+ARLQAQF+Q+R P AM P + +P
Sbjct: 804 LTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTP-LQSGVP 862
Query: 239 MYPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQ 294
+ G L QQ +GQ P +IP Q AG+G+QQQL+PGMRP A PNF +P + Q
Sbjct: 863 GFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVA--PNFIMPYQLQRQ 920
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQD---FPFDMGAGS 350
GQ GQR G RRG Q Q P++ +YRY GRN D P + G
Sbjct: 921 GQPGQRMGVRRGGNSQQMQHQQQPLLHRN---SNQSYRYMANGRNGVDPSMVPQGL-MGP 976
Query: 351 MLPVPVDMGAGIPRR--DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
++P+P D+ +G+P D P+P++ L++ALA+ +P+ QR +LGE L+PLVE++ER+
Sbjct: 977 VMPLPFDV-SGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERE 1035
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
A KVTGMLLEMDQTEVLHL+ESP+ALK KVAEAM+VLR A N+ DQL SL LNE
Sbjct: 1036 TAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLR--ASSSGNDVGDQLGSLMLNE 1093
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 13/202 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ F NVF+KNLD S ++ L F +GT+ S + D +G+SK +GFV FE + A
Sbjct: 557 KSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQN 616
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ YVG + ER + KF N+Y+KNL ++
Sbjct: 617 AIKRLNGMLINDKQVYVGLFVRHQERNR----------GNGSPKFT--NVYVKNLSETTT 664
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLY 203
D+ LK +F ++G+ITS VMRD SG+SK GFV F + + A+ A+ +NG K Y
Sbjct: 665 DDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWY 724
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQRK ER A L+A+F Q R
Sbjct: 725 VGKAQRKSEREAELRAKFEQER 746
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD + + L +F + + S V RD ++ + +VNF + DA A+E
Sbjct: 474 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 533
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 534 LNFTPLNGKPIRIMFSHRD----------------PSIRKSGFANVFIKNLDPSIDNKAL 577
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCK+ D +G SKG GFV F E A A+ +NG +I K +YV +
Sbjct: 578 LDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFV 637
Query: 209 RKEER 213
R +ER
Sbjct: 638 RHQER 642
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 186
+F +LY+ +L +I + +L +LF + + S +V RD + S G +V F++P++A+
Sbjct: 469 RFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDAT 528
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
AL +N + KP+ + + R
Sbjct: 529 NALEHLNFTPLNGKPIRIMFSHR 551
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 286/480 (59%), Positives = 347/480 (72%), Gaps = 22/480 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG F+R QER KF NV+VKNL E+TTD+DLK IFG+YG+ITSAVV
Sbjct: 164 MLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVV 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFE 119
MRD G SKCFGFVNF+++D AA AVE LNG F DD+ WYVGKAQ+KSERE EL+ +FE
Sbjct: 224 MRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFE 283
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q K +KF+G NLY+KNL DS++DEKLKELFSEFGTITSCKVM DP G+SKGSGFVAF
Sbjct: 284 QERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAF 343
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP 238
TPEEA+RAL MNGKMI KPLYVAVAQRKEER+ARLQAQF+Q+R P AM P + +P
Sbjct: 344 LTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTP-LQSGVP 402
Query: 239 MYPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQ 294
+ G L QQ +GQ P +IP Q AG+G+QQQL+PGMRP A PNF +P + Q
Sbjct: 403 GFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVA--PNFIMPYQLQRQ 460
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQD---FPFDMGAGS 350
GQ GQR G RRG Q Q P++ +YRY GRN D P + G
Sbjct: 461 GQPGQRMGVRRGGNSQQMQHQQQPLLHRN---SNQSYRYMANGRNGVDPSMVPQGL-MGP 516
Query: 351 MLPVPVDMGAGIPRR--DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
++P+P D+ +G+P D P+P++ L++ALA+ +P+ QR +LGE L+PLVE++ER+
Sbjct: 517 VMPLPFDV-SGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERE 575
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
A KVTGMLLEMDQTEVLHL+ESP+ALK KVAEAM+VLR A N+ DQL SL LNE
Sbjct: 576 TAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLR--ASSSGNDVGDQLGSLMLNE 633
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 13/209 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ F NVF+KNLD S ++ L F +GT+ S + D +G+SK +GFV FE
Sbjct: 90 HRDPSIRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFE 149
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ LNG +D++ YVG + ER + KF N+Y+K
Sbjct: 150 QEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNR----------GNGSPKFT--NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ D+ LK +F ++G+ITS VMRD SG+SK GFV F + + A+ A+ +NG
Sbjct: 198 NLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATF 257
Query: 198 V-SKPLYVAVAQRKEERRARLQAQFSQMR 225
K YV AQRK ER A L+A+F Q R
Sbjct: 258 NDDKVWYVGKAQRKSEREAELRAKFEQER 286
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD + + L +F + + S V RD ++ + +VNF + DA A+E
Sbjct: 14 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 73
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 74 LNFTPLNGKPIRIMFSHRDP----------------SIRKSGFANVFIKNLDPSIDNKAL 117
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCK+ D +G SKG GFV F E A A+ +NG +I K +YV +
Sbjct: 118 LDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFV 177
Query: 209 RKEER 213
R +ER
Sbjct: 178 RHQER 182
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASR 187
F +LY+ +L +I + +L +LF + + S +V RD + S G +V F++P++A+
Sbjct: 10 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 69
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N + KP+ + + R
Sbjct: 70 ALEHLNFTPLNGKPIRIMFSHR 91
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 339/459 (73%), Gaps = 26/459 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ +KQVFVG F+R+QER+ KFNNV+VKNL ++TTD+DLK++FGE+G I+SAVV
Sbjct: 188 MLLIEKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVV 247
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +GKSKCFGFVNFENADDAA AVE LNGKK DD+EWYVG+AQKKSERE EL+ +++Q
Sbjct: 248 MRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQ 307
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE DK+QG+NLY+KNL D+IDD+KL+ELF FGTI SCKVMRDP G SKGSGFVAFS
Sbjct: 308 ERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFS 367
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR--ARLQAQFSQMR-PVAMGPSVPPRM 237
T EEA+RA+ EMNG+M+ +KP+YVA+AQ+++ERR QAQF+ R PV +GP+V +
Sbjct: 368 TTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQFAPFRVPVGLGPAVASSV 427
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQ 296
PM+ PG +G+GQ YGQ PPA P AGF YQQQ++ GMRP G +P + +P+V Q Q
Sbjct: 428 PMFHPG-AGMGQPVFYGQHPPAFPPQPAGFAYQQQMMSGMRPGGPQLPFYSLPIVQRQPQ 486
Query: 297 QGQRPGGRRGAG------PVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAG 349
QRP RRG QQ QQP +M Q+ RG +RY P RN D AG
Sbjct: 487 PQQRPNARRGGAPQQQQQQQQQQQQPPQLMSQQVCCRGRNFRYTPTSRNSSD------AG 540
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
MLPVP++ + G PI L++ALA+ASP QR +LGE LYPLV+ LE +
Sbjct: 541 GMLPVPLEA--------SETGILPPINVLASALASASPTDQRVMLGEQLYPLVDNLEHEC 592
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VLR+
Sbjct: 593 AGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLRN 631
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F ++G I S V D G+S+ +GFV FE D A
Sbjct: 121 KSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQS 180
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +++ +VG ++ ER+ + + KF N+Y+KNLGD+
Sbjct: 181 AIKQVNGMLLIEKQVFVGPFVRRQERD----------LTGGIAKFN--NVYVKNLGDATT 228
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+ LK +F EFG I+S VMRDP G SK GFV F ++A+ A+ E+NGK + K YV
Sbjct: 229 DDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYV 288
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A++ Q R
Sbjct: 289 GRAQKKSEREAELRARYDQER 309
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD + T+ L +F + + S V RD K S + +VN+ DA++A+E
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 98 LNFSLVNGKPIRIMFSHRDP----------------SIRKSGMANIFIKNLDKSIDNKAL 141
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F++FG I SCKV D SG S+G GFV F + A A+ ++NG +++ K ++V
Sbjct: 142 YDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFV 201
Query: 209 RKEER 213
R++ER
Sbjct: 202 RRQER 206
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 276/466 (59%), Positives = 340/466 (72%), Gaps = 33/466 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ +KQVFVG F+R+QER+ TKFNNV+VKNL ++TTD+DLK++FGE+G I+SAVV
Sbjct: 188 MLLIEKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVV 247
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +GKSKCFGFVNFENADDAA AVE LNGKK DD+EWYVG+AQKKSERE EL+ +++Q
Sbjct: 248 MRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQ 307
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE DK+QG+NLY+KNL D+IDD+KL+ELF FGTI SCKVMRDP G SKGSGFVAFS
Sbjct: 308 ERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFS 367
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR--ARLQAQFSQMR-PVAMGPSVPPRM 237
T EEA+RA+ EMNG+M+ +KP+YVA+AQ+++ERR QAQF+ R PV +GP+V +
Sbjct: 368 TTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQFAPFRVPVGLGPAVASSV 427
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV-SQGQ 296
PM+ PG +G+GQ YGQ PPA P AGF YQQQ++ GMRP G +P + +P+V Q Q
Sbjct: 428 PMFHPG-AGMGQPVFYGQHPPAFPPQPAGFAYQQQMMSGMRPGGPQLPFYSLPIVQRQPQ 486
Query: 297 QGQRPGGRRGAG-------------PVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDF 342
QRP RRG QQ QQP +M Q+ RG +RY P RN D
Sbjct: 487 PQQRPNARRGGAPQQQQQQQQQQQQQQQQQQQPPQLMSQQVCCRGRNFRYTPTSRNSSD- 545
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
AG MLPVP++ + G PI L++ALA+ASP QR +LGE LYPLV
Sbjct: 546 -----AGGMLPVPLEA--------SETGILPPINVLASALASASPTDQRVMLGEQLYPLV 592
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ LE + A KVTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VLR+
Sbjct: 593 DNLEHECAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLRN 638
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F ++G I S V D G+S+ +GFV FE D A
Sbjct: 121 KSGMANIFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQS 180
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +++ +VG ++ ER+ + V KF N+Y+KNLGD+
Sbjct: 181 AIKQVNGMLLIEKQVFVGPFVRRQERD----------LTGGVTKFN--NVYVKNLGDATT 228
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+ LK +F EFG I+S VMRDP G SK GFV F ++A+ A+ E+NGK + K YV
Sbjct: 229 DDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYV 288
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A++ Q R
Sbjct: 289 GRAQKKSEREAELRARYDQER 309
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD + T+ L +F + + S V RD K S + +VN+ DA++A+E
Sbjct: 38 SLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEM 97
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 98 LNFSLVNGKPIRIMFSHRDP----------------SIRKSGMANIFIKNLDKSIDNKAL 141
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F++FG I SCKV D SG S+G GFV F + A A+ ++NG +++ K ++V
Sbjct: 142 YDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFV 201
Query: 209 RKEER 213
R++ER
Sbjct: 202 RRQER 206
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 293/480 (61%), Positives = 357/480 (74%), Gaps = 31/480 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ +KQVFVG F+R+QERE KFNNVFVKNL ESTTD++LK++FG +G ITSAVV
Sbjct: 155 MLVAEKQVFVGPFVRRQEREQ---NGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVV 211
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFEN D+AAKAV LNGKK +D+EWYVG+AQKKSERE EL+ ++EQ
Sbjct: 212 MRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQ 271
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE +D++QG NLY+KNL D +DDE+L+E+F++FG+ITSCKVMRD G SKGSGFVA+S
Sbjct: 272 ERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYS 331
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPM 239
PEEA+RA EMNGKMI SKP+YVA+AQRKEERRA+LQAQF+QMR PV + + MPM
Sbjct: 332 APEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQAQFAQMRSPVGVATT----MPM 387
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
Y PG GLGQQ YGQ PPA++PPQ AGF YQQQ++ GMRP G +P++FVPVV
Sbjct: 388 YHPGAPGLGQQLFYGQ-PPALMPPQPAGFAYQQQML-GMRPGGGQLPSYFVPVV------ 439
Query: 299 QRPG---------GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGA 348
QR G RRGA QQ LP QM +RY P RN + P
Sbjct: 440 QRQGPQGGQRAAGARRGAAGTPVPQQQLPPPQQQMIRGNRNFRYTPSARNTPEVPVPPQL 499
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
++LPVP+++ + + + +PI AL++ALA+ASPE QR +LGE LYPLV+QLE D
Sbjct: 500 VNVLPVPLEIPSVPLTPVSPLPPSLPIGALASALASASPEHQRVMLGEQLYPLVDQLEHD 559
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
A KVTGMLLEMDQTE+LHLLE+P+ALKAKVAEAMEVLR Q +P+ +LASLSLNE
Sbjct: 560 HAGKVTGMLLEMDQTEILHLLEAPDALKAKVAEAMEVLR----QAQRSPSTELASLSLNE 615
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 15/201 (7%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD + ++ L F +G I S V D +G+SK +GFV FE + A
Sbjct: 88 KSGTANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQV 147
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +++ +VG ++ EREQ G+F N+++KNLG+S
Sbjct: 148 AIDKVNGMLVAEKQVFVGPFVRRQEREQ--NGKFN-------------NVFVKNLGESTT 192
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++LKE+F FG ITS VMRD G SK GFV F P+EA++A+ +NGK I K YV
Sbjct: 193 DDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYV 252
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A++ Q R
Sbjct: 253 GRAQKKSEREAELRAKYEQER 273
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 21/187 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + ++ L +F + G + S V RD +S + +VN+ N DA +A+E
Sbjct: 5 SLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALEL 64
Query: 89 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LN + GKA + S R+ ++ K N++IKNL +ID++
Sbjct: 65 LNFTPVN------GKAVRIMFSHRDPSIR------------KSGTANIFIKNLDRAIDNK 106
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + F FG I SCKV D +G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 107 ALHDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGP 166
Query: 207 AQRKEER 213
R++ER
Sbjct: 167 FVRRQER 173
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L ++ + +L +LF++ G + S +V RD + S G +V ++ ++A+R
Sbjct: 1 FVSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATR 60
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N + K + + + R
Sbjct: 61 ALELLNFTPVNGKAVRIMFSHR 82
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 302/480 (62%), Positives = 366/480 (76%), Gaps = 19/480 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG F+R+QER+ +KFNNV+VKNL E+TTD++LKK+FG YG I+SAVV
Sbjct: 175 MLLNDKQVFVGPFVRRQERDLSGGVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +GKSKCFGFVNFE ADDAAKAVEALNGKK D++EWYVG+AQKKSERE EL+ +FEQ
Sbjct: 235 MRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
K ++K+QG+NLY+KNL D++DDEKL+ELF+E+GTITSCKVM+DP G S+GSGFVAFS
Sbjct: 295 ERKSRIEKYQGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+RA+ EMN KM+ SKPLYVA+AQRKEERR RLQA F+QMR +GP+VP +PMY
Sbjct: 355 TPEEATRAVTEMNTKMVGSKPLYVALAQRKEERRVRLQAAFAQMR-TPVGPTVPTSLPMY 413
Query: 241 PPGPSGLGQQF-LYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFF-VPVV--SQG 295
PGP GLG Q YGQ P IP Q A FGY Q+ MRP GA +PN+ P V SQG
Sbjct: 414 HPGP-GLGPQMPYYGQHPSGPIPLQPAAFGYPPQI---MRPGGAQIPNYIGYPNVSLSQG 469
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF---PFDMGAGSML 352
QQGQR GGRRG P QQ QQ M + R Y P RN D P G ML
Sbjct: 470 QQGQRAGGRRGGAPQQQQQQSQQQMIQRGGNRNFRYT-PNVRNASDGTAPPPQGMMGVML 528
Query: 353 PVPVDMGAGIPRRDASVG---QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
PVP+++G G+P + G QP+PI+AL++ALA+A P+QQR +LGE LYPLV+QLE +
Sbjct: 529 PVPLEIG-GMPAANVDSGVPQQPLPISALASALASAPPDQQRAMLGEQLYPLVDQLEHEF 587
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNEN 469
A KVTGMLLEMDQTEVLHL+ESPEALKAKV EAMEVLR +AQ + P ++L +LS++ +
Sbjct: 588 AGKVTGMLLEMDQTEVLHLIESPEALKAKVNEAMEVLR-MAQAVPSAPTEELGNLSISNS 646
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD++ ++ L F +G I S V D G+SK +GFV FE + A
Sbjct: 108 KSGAANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQS 167
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D++ +VG ++ ER+ + V KF N+Y+KNLG++
Sbjct: 168 AIEKVNGMLLNDKQVFVGPFVRRQERD----------LSGGVSKFN--NVYVKNLGENTT 215
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++LK++F +G I+S VMRD G SK GFV F ++A++A+ +NGK K YV
Sbjct: 216 DDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYV 275
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A+F Q R
Sbjct: 276 GRAQKKSEREAELRAKFEQER 296
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+V+V +L+ + ++ L +IF + G + S V RD +S + +VN+ +A DA +A+E
Sbjct: 25 SVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALEL 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + S R+ L+ K N++IKNL +ID++ L
Sbjct: 85 LNFTPVNGKPIRI----MFSHRDPSLR------------KSGAANIFIKNLDKAIDNKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SG SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 129 HDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFV 188
Query: 209 RKEER 213
R++ER
Sbjct: 189 RRQER 193
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
++F ++Y+ +L ++ + +L E+FS+ G + S +V RD + S G +V + + ++A
Sbjct: 19 NQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDA 78
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+RAL +N + KP+ + + R R
Sbjct: 79 TRALELLNFTPVNGKPIRIMFSHRDPSLR 107
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 297/483 (61%), Positives = 349/483 (72%), Gaps = 23/483 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV V F+R+QERE TKFNNVFVKNL E TTDEDL ++FG +G I+SAVV
Sbjct: 2 MLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAVV 61
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +G SKCFGFVNF+NADDAAKAVE +NGK F+D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 62 MRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFEQ 121
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE +KFQG+NLY+KN+ DSIDDEKLKELFS FGT+ SCK+MR P G GSGFVA S
Sbjct: 122 LRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALS 181
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PR 236
+ +EA RA+ EMNGKM+ SKPLYVAVAQRK+ERRA+LQAQF+Q+R V +VP
Sbjct: 182 SKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLRNVV--ANVPQMNGSP 239
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ- 294
P+YPP P +GQQ YGQ P ++PPQ +GFGYQ +VPGMRP G MPN+F+P V +
Sbjct: 240 GPLYPPRPPAMGQQVYYGQPPHGLLPPQPSGFGYQHPMVPGMRPGGPQMPNYFLPAVQRP 299
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA--YRYPLGRNMQDFPFDMGAGSML 352
GQQGQR G RR GP QQ P+M QM PRG++ RY + G S+
Sbjct: 300 GQQGQRMGNRR-PGPPFLHQQQQPLMQQQMAPRGNSRPMRYSQSSRVAPDVSLQGYSSL- 357
Query: 353 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
DMG +P + G MP A + A ASPEQQR +LGE LYPLV++LE D A K
Sbjct: 358 ----DMGGALP-NSSDTGLYMPALASALAS--ASPEQQRVMLGEQLYPLVDRLEHDHAGK 410
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA---NNPADQLASLSLNEN 469
VTGMLLEMDQTEVLHL+ESPEALKAKVAEAM+VL+ +AQ A N D ASLSLNE
Sbjct: 411 VTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLQ-MAQANAGASTNGIDHFASLSLNEP 469
Query: 470 LVS 472
L S
Sbjct: 470 LAS 472
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 277/476 (58%), Positives = 334/476 (70%), Gaps = 41/476 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG F+R QER KF NV+VKNL E+TTD+DLK IFG+YG+ITSAVV
Sbjct: 190 MLINDKQVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVV 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFE 119
MRD G SKCFGFVNF+++D AA AVE LNG F DD+ WYVGKAQ+KSERE EL+ +FE
Sbjct: 250 MRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFE 309
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q K +KF+G NLY+KNL DS++DEKL ELFSEFGTITSCKVM DP G+SKGSGFVAF
Sbjct: 310 QERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAF 369
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP 238
TPEEA+RAL MNGKMI KPLYVAVAQRKEER+ARLQAQF+Q+R P AM P + +P
Sbjct: 370 LTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTP-LQSGVP 428
Query: 239 MYPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQ 294
+ G L QQ +GQ P +IP Q AG+G+QQQL+PGMRP A PNF +P + Q
Sbjct: 429 GFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVA--PNFIMPYQLQRQ 486
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
GQ GQR G RRG Q Q P G ++P+
Sbjct: 487 GQPGQRMGVRRGGNSQQMQHQQQP---------------------------ASWGPVMPL 519
Query: 355 PVDMGAGIPRR--DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
P D+ +G+P D P+P++ L++ALA+ +P+ QR +LGE L+PLVE++ER+ A K
Sbjct: 520 PFDV-SGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIERETAGK 578
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
VTGMLLEMDQTEVLHL+ESP+ALK KVAEAM+VLR A N+ DQL SL LNE
Sbjct: 579 VTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLR--ASSSGNDVGDQLGSLXLNE 632
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ F NVF+KNLD S ++ L F +GT+ S + D +G+SK +GFV FE + A
Sbjct: 123 KSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQN 182
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ LNG +D++ YVG + ER KF N+Y+KNL ++
Sbjct: 183 AIKRLNGMLINDKQVYVGLFVRHQERNX----------GNGSPKFT--NVYVKNLSETTT 230
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLY 203
D+ LK +F ++G+ITS VMRD SG+SK GFV F + + A+ A+ +NG K Y
Sbjct: 231 DDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWY 290
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQRK ER A L+A+F Q R
Sbjct: 291 VGKAQRKSEREAELRAKFEQER 312
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD + + L +F + + S V RD ++ + +VNF + DA A+E
Sbjct: 40 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + S R+ ++ K N++IKNL SID++ L
Sbjct: 100 LNFTPLNGKPIRI----MFSHRDPSIR------------KSGFANVFIKNLDPSIDNKAL 143
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCK+ D +G SKG GFV F E A A+ +NG +I K +YV +
Sbjct: 144 LDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFV 203
Query: 209 RKEER 213
R +ER
Sbjct: 204 RHQER 208
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASR 187
F +LY+ +L +I + +L +LF + + S +V RD + S G +V F++P++A+
Sbjct: 36 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 95
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N + KP+ + + R R
Sbjct: 96 ALEHLNFTPLNGKPIRIMFSHRDPSIR 122
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/479 (60%), Positives = 340/479 (70%), Gaps = 24/479 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLIND+QV V F+RKQER+ + K FNNV+VKNL E+TTDEDL+K+F +G I+SAVV
Sbjct: 177 MLINDRQVSVAPFIRKQERDMASSKN-FNNVYVKNLAEATTDEDLRKVFAGFGPISSAVV 235
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFEN DDAA AVE LNGK +++EWYVG+AQKKSERE ELK +FEQ
Sbjct: 236 MRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQ 295
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE +KFQG+NLY+KN+ DSIDDEKL+ELF+ FGT+TSCKVM+ P G S GSGFV FS
Sbjct: 296 VRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFS 355
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMP 238
PEEA +A+ +MNGKM+ SKPLYVA+AQRKEERRARLQAQF+QM+ V P P
Sbjct: 356 APEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQIVAPNAPPMAPNPPS 415
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
MY PGP G+G Q YGQ P ++P QA GFGYQQ +VP MRP A +PN+F+PV GQQ
Sbjct: 416 MYHPGPQGMGHQMFYGQPAPGLLPSQANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQ 475
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG--HAYRYP-LGRNMQDFPFDMGAGSMLPV 354
QRP RRG V Q P Q PRG + RY R M D G G
Sbjct: 476 IQRPVNRRGG--VGPLQPQHHQPPPQQFPRGGNRSMRYSQFSRTMPDSTMQ-GFGM---- 528
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
MGA +AS MP A +ALA+ASPE+QR +LGE LYPLV++LE D A KVT
Sbjct: 529 ---MGAA----NASNIGLMPALA--SALASASPEEQRVMLGEQLYPLVDRLEHDHAGKVT 579
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR-SVAQQQANNPADQLASLSLNENLVS 472
GMLLEMDQ EVLHL++ LKAKVAEAM+VLR + +N+P DQLASLSL E+L S
Sbjct: 580 GMLLEMDQPEVLHLIDLLRQLKAKVAEAMDVLRMAQGSISSNSPLDQLASLSLTESLTS 638
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD ++ +L ++F + G + S V RD KS + +VN+ DA++A+E
Sbjct: 27 SLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALEL 86
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + ++ K N++IKNL SID++ L
Sbjct: 87 LNFTLVKGKPIRIMYSHRDP----------------SIRKSGAANIFIKNLEKSIDNKAL 130
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FGTI SC+V+ D +G SKG GFV F E A A+ ++NG +I + + VA
Sbjct: 131 HDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFI 190
Query: 209 RKEER 213
RK+ER
Sbjct: 191 RKQER 195
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 282/480 (58%), Positives = 341/480 (71%), Gaps = 25/480 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG F+R+QERE KF NV+VKNL E+ TDEDLKK+FG YGTITSA V
Sbjct: 186 MLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATV 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQKKSEREQELKGQFE 119
M+D +GKS+CFGFVNF+N D AA AVE LNG + DR YVG+AQ+K+ERE ELK + E
Sbjct: 246 MKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIE 305
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +K QG NLY+KNL DS DEKLK+LFSEFGTITSCKVM D +G SKGSGFV+F
Sbjct: 306 QERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSF 365
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP 238
STPEEAS+AL EMNGK+I KPLYVAVAQRKEER+A LQAQF+Q+R P M P +P +P
Sbjct: 366 STPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAP-LPAGIP 424
Query: 239 MYPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQ 294
+Y PG L QQ YGQ P +PPQ AGF +QQQ++PGMRP A PNF +P + Q
Sbjct: 425 LYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVA--PNFIMPYHLQRQ 482
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQD---FPFDMGAGS 350
GQ GQR G RR G QQ QQ M H+ +G +RY P GRN D P + G
Sbjct: 483 GQLGQRTGVRRN-GNFQQVQQNQ--MLHRNSNQG--FRYMPNGRNGMDPSLVPHGL-MGP 536
Query: 351 MLPVPVDMGAGIPRRDASVGQPMPI-TALSTALANASPEQQRTLLGESLYPLVEQLE-RD 408
M+P+P D G+G+ +P + T L++ALA+A+PE QR +LGE LYPLVE+L
Sbjct: 537 MMPMPFD-GSGVTAAPNDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQ 595
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
AKVTGMLLEMDQ+EV++L+ESPE LK KV+EAM+VL VA + + DQL S+SLNE
Sbjct: 596 YTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLHEVA---SGSEVDQLGSMSLNE 652
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 13/209 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S ++ L F +GT+ S V D G+SK +GFV F+
Sbjct: 112 QRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFD 171
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A A++ LNG +D++ YVG ++ EREQ KF N+Y+K
Sbjct: 172 NEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQ----------TNGSPKFT--NVYVK 219
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ DE LK+LF +GTITS VM+D +G S+ GFV F P+ A+ A+ +NG I
Sbjct: 220 NLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTI 279
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQRK ER A L+A+ Q R
Sbjct: 280 NNDRVLYVGRAQRKAEREAELKAKIEQER 308
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +L+ + +E L +F + I S V RD +S + +VNF NA DA+ A+E
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + +Q+ + G N++IKNL SID++ L
Sbjct: 96 LNFTPLNGKPIRIMFSQRDPSIRKSGHG----------------NVFIKNLDTSIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCKV D SG SKG GFV F E A A+ +NG +I K +YV +
Sbjct: 140 HDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFI 199
Query: 209 RKEER 213
R++ER
Sbjct: 200 RRQER 204
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASR 187
F +LY+ +L ++++E+L +LFS+ I S +V RD + S G +V F+ ++AS
Sbjct: 32 FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASN 91
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
A+ +N + KP+ + +QR
Sbjct: 92 AMELLNFTPLNGKPIRIMFSQR 113
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/331 (77%), Positives = 285/331 (86%), Gaps = 2/331 (0%)
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
I DEKLKELFS +GTITSCKVMRDPSG+SKGSGFVAFS PEEASRAL+EMNGKM+VSKPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 203 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 262
YVA+AQRKEERRARLQAQFSQMRP+AM SV PRMPMYPPG GLGQQ YGQ PA++P
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLP 120
Query: 263 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 321
PQAGFGYQQQLVPGMRP G PMPNFF+P+V QGQQGQRPG RR GA P+QQ QQP+P+M
Sbjct: 121 PQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLMQ 180
Query: 322 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 381
QM PRG YRYP GR + D F G M +P DMG G+P RDA + QP+P+ AL+TA
Sbjct: 181 QQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMG-GMPVRDAGIVQPIPVGALATA 239
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LAN+SP +QRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESPEALKAKVAE
Sbjct: 240 LANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 299
Query: 442 AMEVLRSVAQQQANNPADQLASLSLNENLVS 472
AMEVLR+V+QQQ++NPADQLASLSLN+ LVS
Sbjct: 300 AMEVLRNVSQQQSSNPADQLASLSLNDGLVS 330
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 41 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100
+DE LK++F YGTITS VMRD G SK GFV F N ++A++A+ +NGK + Y
Sbjct: 2 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 61
Query: 101 VGKAQKKSEREQELKGQFEQ 120
V AQ+K ER L+ QF Q
Sbjct: 62 VALAQRKEERRARLQAQFSQ 81
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 268/473 (56%), Positives = 327/473 (69%), Gaps = 12/473 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK+VFVG F+R QER KF NV+VKNL E+T+DEDLKK F YG ITSA+V
Sbjct: 184 MLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIV 243
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D GKSK FGFVNF++ D AA AVE LNG F+D+ WYVG+AQ+K ERE ELK +FEQ
Sbjct: 244 MKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQ 303
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+K + NLY+KNL D IDDEKLKELFSEFG+ITSCKVM D G+SKGSGFVAFS
Sbjct: 304 ERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFS 363
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL MNGKMI KPLYVAVAQR+EER+ARLQA F+Q++ + P +P +P Y
Sbjct: 364 TPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQIQAPGLSP-MPSGLPGY 422
Query: 241 PPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG L QQ +GQ ++PPQ AG+G+QQQL+PGMR AG PNF +P Q Q
Sbjct: 423 HPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGMR-AGVG-PNFVMPYQMQRQGQ 480
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG-AGSMLPVPVD 357
Q G Q Q + H+ +G Y + G G ++P P +
Sbjct: 481 QGQRMGIRRGGNHQQIQQQQQLLHRNTNQGLRYMGNARNGIDSSAAPQGFVGPVVPFPFE 540
Query: 358 MGAGIPR--RDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+G+P DA P+PI+AL+TALA+A+PE++ +LGE LYPLVE+LE D AKVTG
Sbjct: 541 -ASGMPVTPSDAQRTAPVPISALTTALASATPEKRMVMLGEQLYPLVERLEPDQVAKVTG 599
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
MLLEMDQTEVLHL+ESP+ALK KVAEAM+VL+ V A++ DQL SL+LNE
Sbjct: 600 MLLEMDQTEVLHLIESPDALKKKVAEAMQVLQEVG---ASSVGDQLGSLALNE 649
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD S ++ L++ F +G++ S V D +G+SK +GFV FEN + A
Sbjct: 117 KSGHANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQS 176
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ LNG +D+E +VG+ + ER E + N+Y+KNL ++
Sbjct: 177 AINRLNGMLINDKEVFVGRFVRHQER------------IEATGSPKFTNVYVKNLSETTS 224
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LK+ FS +G ITS VM+D SG SKG GFV F +P+ A+ A+ ++NG K YV
Sbjct: 225 DEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYV 284
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQRK ER A L+A+F Q R
Sbjct: 285 GRAQRKGEREAELKARFEQER 305
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 21/188 (11%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVE 87
++++V +L+ + + L +F + + S V RD ++ + +VNF N DA+ A+E
Sbjct: 33 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAME 92
Query: 88 ALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
LN + GKA + S R+ ++ K N++IKNL SID+
Sbjct: 93 LLNFTPLN------GKAIRIMVSHRDPSMR------------KSGHANVFIKNLDTSIDN 134
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L+E F+ FG++ SCKV D +G SKG GFV F E A A+ +NG +I K ++V
Sbjct: 135 KALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVG 194
Query: 206 VAQRKEER 213
R +ER
Sbjct: 195 RFVRHQER 202
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++++ +L +LFS+ + S +V RD + S G +V FS P++AS
Sbjct: 29 QFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAS 88
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
A+ +N + K + + V+ R R
Sbjct: 89 NAMELLNFTPLNGKAIRIMVSHRDPSMR 116
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/459 (58%), Positives = 325/459 (70%), Gaps = 19/459 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDKQV+VG F+R+QERE KF NV+VKNL E+ TDEDLKK+FG YGTITSA V
Sbjct: 186 MLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATV 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQKKSEREQELKGQFE 119
M+D +GKS+CFGFVNF+N D AA AVE LNG + DR YVG+AQ+K+ERE ELK + E
Sbjct: 246 MKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIE 305
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +K QG NLY+KNL DS DEKLK+LFSEFGTITSCKVM D +G SKGSGFV+F
Sbjct: 306 QERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSF 365
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP 238
STPEEAS+AL EMNGK+I KPLYVAVAQRKEER+A LQAQF+Q+R P M P +P +P
Sbjct: 366 STPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAP-LPAGIP 424
Query: 239 MYPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQ 294
+Y PG L QQ YGQ P +PPQ AGF +QQQ++PGMRP A PNF +P + Q
Sbjct: 425 LYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSFQQQILPGMRPGVA--PNFIMPYHLQRQ 482
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD---FPFDMGAGSM 351
GQ GQR G RR Q Q M H+ +G Y P GRN D P + G M
Sbjct: 483 GQLGQRTGVRRNGNFQQVQQN--QQMLHRNSNQGFRY-MPNGRNGMDPSLVPHGL-MGPM 538
Query: 352 LPVPVDMGAGIPRRDASVGQPMPI-TALSTALANASPEQQRTLLGESLYPLVEQLE-RDA 409
+P+P D G+G+ +P + T L++ALA+A+PE QR +LGE LYPLVE+L
Sbjct: 539 MPMPFD-GSGVTAAPNDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQY 597
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
AKVTGMLLEMDQ+EV++L+ESPE LK KV+EAM+VL+S
Sbjct: 598 TAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLQS 636
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 13/209 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S ++ L F +GT+ S V D G+SK +GFV F+
Sbjct: 112 QRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFD 171
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A A++ LNG +D++ YVG ++ EREQ KF N+Y+K
Sbjct: 172 NEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQ----------TNGSPKFT--NVYVK 219
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ DE LK+LF +GTITS VM+D +G S+ GFV F P+ A+ A+ +NG I
Sbjct: 220 NLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTI 279
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQRK ER A L+A+ Q R
Sbjct: 280 NNDRVLYVGRAQRKAEREAELKAKIEQER 308
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +L+ + +E L +F + I S V RD +S + +VNF NA DA+ A+E
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + +Q+ + G N++IKNL SID++ L
Sbjct: 96 LNFTPLNGKPIRIMFSQRDPSIRKSGHG----------------NVFIKNLDTSIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCKV D SG SKG GFV F E A A+ +NG +I K +YV +
Sbjct: 140 HDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFI 199
Query: 209 RKEER 213
R++ER
Sbjct: 200 RRQER 204
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASR 187
F +LY+ +L ++++E+L +LFS+ I S +V RD + S G +V F+ ++AS
Sbjct: 32 FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASN 91
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
A+ +N + KP+ + +QR
Sbjct: 92 AMELLNFTPLNGKPIRIMFSQR 113
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 266/476 (55%), Positives = 334/476 (70%), Gaps = 22/476 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M +NDKQV+VG F+R+QER KF NV+VKNL E+ T+EDL+K+FG YGTITSA+V
Sbjct: 196 MCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALV 255
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDREWYVGKAQKKSEREQELKGQFE 119
M+D GKS+ FGFVNF++ D AA AVE LNG DD+ WYVG+AQ+KSERE ELK +FE
Sbjct: 256 MKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFE 315
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q ++ + NLY+KNL D+I+D KLKELFSEFG+ITSCKVM D G+SKGSGFVAF
Sbjct: 316 QERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAF 375
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMP 238
STPEEASRAL EMNGKMI KPLYVA+AQRKEER+ARLQA F+ +R P A+ P +P +P
Sbjct: 376 STPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKARLQAHFALVRAPGALAP-LPSGIP 434
Query: 239 MYPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQ 294
Y G L QQ +GQ P ++PPQ AG+G+QQQ++ MRPA PNF +P + Q
Sbjct: 435 GYNAGAPRLAPQQLYFGQGTPGMMPPQHAGYGFQQQILTSMRPAVG--PNFIIPYHLQRQ 492
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG-AGSMLP 353
GQ GQR G RRG P Q QQ + H+ +G Y + G AG M+P
Sbjct: 493 GQPGQRMGMRRGGNPQQMQQQ--QQLLHRNNNQGLRYVGNARNSGNSSVVPQGLAGPMVP 550
Query: 354 VPVDM-GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
+P ++ GA + V P+ I+ L++ALA+A+PE++ +LG+ LYPLVE+L+ D AK
Sbjct: 551 LPFEVSGASV-----DVQPPVTISTLASALASATPEKRTEMLGDHLYPLVERLQPDHVAK 605
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
VTGMLLEMDQTEVLHL+ESP++LK KVAEAM+VLR + N DQL SL LNE
Sbjct: 606 VTGMLLEMDQTEVLHLIESPDSLKKKVAEAMQVLR----EATANVGDQLGSLVLNE 657
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 13/202 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ + NVF+KNLD + ++ L + F +GT+ S V D +G+SK +GFV FEN + A +
Sbjct: 129 KSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAER 188
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ L+G +D++ YVG ++ ER + KF N+Y+KNL ++I
Sbjct: 189 AISFLDGMCLNDKQVYVGFFVRQQERTR----------TNGSPKFT--NVYVKNLSETIT 236
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLY 203
+E L+++F +GTITS VM+D +G S+G GFV F P+ A+ A+ ++NG K Y
Sbjct: 237 NEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWY 296
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQRK ER A L+A+F Q R
Sbjct: 297 VGRAQRKSEREAELKAKFEQER 318
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +L+++ +E L +F + + S V RD +S +G+VNF N DAA A++A
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + + G N++IKNL ++D++ L
Sbjct: 106 LNFTPLNGKPIRIMFSHRDPSIRKSGYG----------------NVFIKNLDSTLDNKLL 149
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E F+ FGT+ SCKV D +G SKG GFV F E A RA++ ++G + K +YV
Sbjct: 150 HETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFV 209
Query: 209 RKEER 213
R++ER
Sbjct: 210 RQQER 214
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEAS 186
+F L+LY+ +L ++++E+L +LFS+ + S +V RD + S G G+V FS P++A+
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
A+ +N + KP+ + + R
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHR 123
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 268/471 (56%), Positives = 321/471 (68%), Gaps = 34/471 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK+VFVG F+R QER KF NV+VKNL E+T+DEDLKK F YG+ITSA+V
Sbjct: 174 MLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIV 233
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D GKSK FGFVNF++ D AA AVE LNG F+D+ WYVG+AQ+K ERE ELK +FEQ
Sbjct: 234 MKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQ 293
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+K + NLY+KNL D IDDEKLKELFSEFG+ITSCKVM D G+SKGSGFVAFS
Sbjct: 294 ERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFS 353
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL MNGKMI KPLYVAVAQR+EER+ARLQA F+Q++ + P +P +P Y
Sbjct: 354 TPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQIQAPGLSP-MPSGLPGY 412
Query: 241 PPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG L QQ +GQ ++PPQ AG+G+QQQL+PGMR AG PNF +P Q Q
Sbjct: 413 HPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGMR-AGVG-PNFVMPYQMQRQGQ 470
Query: 299 QRPGG--RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPV 356
Q RRG HQ + Y L Q FP + A M P
Sbjct: 471 QGQRMGIRRGGN-------------HQQIQQQQQVHYRLNV-FQRFP-PLTASGMPVTP- 514
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
DA P+PI+AL+TALA+A+PE++ +LGE LYPLVE+LE D AKVTGM
Sbjct: 515 --------SDAQRTAPVPISALTTALASATPEKRMVMLGEQLYPLVERLEPDHVAKVTGM 566
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 467
LLEMDQTEVLHL+ESP+ALK KVAEAM+VL+ V A++ DQL SL+LN
Sbjct: 567 LLEMDQTEVLHLIESPDALKKKVAEAMQVLQEVG---ASSVGDQLGSLALN 614
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD S ++ L++ F +G + S V D +G+SK +GFV FEN + A
Sbjct: 107 KSGHANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQS 166
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ LNG +D+E +VG+ + ER E + N+Y+KNL ++
Sbjct: 167 AINRLNGMLINDKEVFVGRFVRHQER------------IEATGSPKFTNVYVKNLSETTS 214
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LK+ FS +G+ITS VM+D SG SKG GFV F +P+ A+ A+ ++NG K YV
Sbjct: 215 DEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYV 274
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQRK ER A L+A+F Q R
Sbjct: 275 GRAQRKGEREAELKARFEQER 295
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVE 87
++++V +L+ + + L +F + + S V RD ++ + +VNF N DAA A+E
Sbjct: 23 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAME 82
Query: 88 ALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
LN + GKA + S R+ ++ K N++IKNL SID+
Sbjct: 83 LLNFTPLN------GKAIRIMVSHRDPSMR------------KSGHANVFIKNLDTSIDN 124
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L+E F+ FG + SCKV D +G SKG GFV F E A A+ +NG +I K ++V
Sbjct: 125 KALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVG 184
Query: 206 VAQRKEER 213
R +ER
Sbjct: 185 RFVRHQER 192
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++++ +L +LFS+ + S +V RD + S G +V FS P++A+
Sbjct: 19 QFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAA 78
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
A+ +N + K + + V+ R R
Sbjct: 79 NAMELLNFTPLNGKAIRIMVSHRDPSMR 106
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/331 (73%), Positives = 281/331 (84%), Gaps = 2/331 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+VFVG FLRKQ+RE A TKFNNVFVKNL ESTT+++L +IFGEYG ITSAVV
Sbjct: 19 MLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTEDNLLEIFGEYGNITSAVV 78
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MR+GDGKSKCFGFVNFE+ + AAKAV+ LNGKKFD +EWYVGKAQKKSERE ELKG+FEQ
Sbjct: 79 MREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQ 138
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
M+E DK QG NLY+KNL DSI D+KL+ELFSEFG+ITSCKVMRDP+G+S+GSGFVAF
Sbjct: 139 RMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQ 198
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+P++AS+ALAEMNGKMI SKPLYVA+AQRKE+RRARLQAQFSQMRPVA+ PSV PR+PMY
Sbjct: 199 SPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQMRPVAIPPSVAPRVPMY 258
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ- 299
P G G+GQQ YGQ PP +IPPQ GFG+QQ LVPGMRP A MPNF++P+V QGQQ Q
Sbjct: 259 PAGAPGMGQQLFYGQPPPTLIPPQPGFGFQQPLVPGMRPGVAAMPNFYMPLVQQGQQAQR 318
Query: 300 RPGGRRGAGPVQQTQQ-PLPIMPHQMPPRGH 329
G R G GP+QQTQQ P+P++ QM P G
Sbjct: 319 PGGRRAGGGPMQQTQQHPMPLIQQQMLPLGR 349
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 12/142 (8%)
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
A A+E LNG +D++ +VG +K +RE T + + N+++KNL +
Sbjct: 9 AHNAIEKLNGMLLNDKKVFVGPFLRKQDRE------------NTANSTKFNNVFVKNLSE 56
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
S ++ L E+F E+G ITS VMR+ G SK GFV F PE A++A+ E+NGK K
Sbjct: 57 STTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKE 116
Query: 202 LYVAVAQRKEERRARLQAQFSQ 223
YV AQ+K ER L+ +F Q
Sbjct: 117 WYVGKAQKKSEREMELKGRFEQ 138
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 257/478 (53%), Positives = 323/478 (67%), Gaps = 23/478 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ND++V+VG F+R+ ER KF NV+VKNL E+T+DEDLKKIF YG ITSA+V
Sbjct: 184 MLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIV 243
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKS+ FGFVNF++ D AA AVE LNG F D+ WYVG+AQ+K ERE ELK +FEQ
Sbjct: 244 MKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQ 303
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+K + NLY+KNLGD+ID+E+LKELFSEFG+ITSCKVM D G+SKGSGFVAFS
Sbjct: 304 ERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFS 363
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEASRAL+EMNGKMI KPLYVA+AQR+EER ARLQA FSQ++ + P++P +P Y
Sbjct: 364 TPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQIQAPGL-PTLPSGLPGY 422
Query: 241 PPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPV------V 292
PG L Q +GQ P ++PPQ AG+ +Q QL+PGMR A PNF +P
Sbjct: 423 HPGTPRLAPHQLYFGQGTPGMMPPQPAGYSFQPQLLPGMRAAVG--PNFVMPYQLQRQGQ 480
Query: 293 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG-AGSM 351
+ G RPGG Q + H+ +G Y + G G +
Sbjct: 481 QGQRMGMRPGG-------NHQQMQQQQLLHRNTNQGVRYVGNARNGIDSSVVPQGFVGPV 533
Query: 352 LPVPVDM-GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
+P+P + G I A P+PI+ L+TALA+A+PE + +LGE LYPLVE LE D
Sbjct: 534 MPLPFEASGMPITPSHAQPTTPVPISTLTTALASATPENRMMMLGEQLYPLVECLEPDHV 593
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
AKVTGMLLEMDQTEVLHL+ESP+ALK KVAEAM+VL+ A++ DQ SL+LNE
Sbjct: 594 AKVTGMLLEMDQTEVLHLIESPDALKKKVAEAMQVLQEAG---ASSVGDQPGSLALNE 648
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 121/208 (58%), Gaps = 12/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ ++ NVF+KNLD ++ L + F +G + S V D +G+SK +GF+ FE
Sbjct: 110 HRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFE 169
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N +DA A+ LNG +DRE YVG ++ ER E G KF N+Y+K
Sbjct: 170 NEEDAQSAINRLNGMLVNDREVYVGPFVRRLER-IEANGS---------PKFT--NVYVK 217
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++ DE LK++FS +G ITS VM+D +G S+G GFV F +P+ A+ A+ ++NG
Sbjct: 218 NLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTF 277
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K YV AQRK ER A L+A+F Q R
Sbjct: 278 SDKVWYVGRAQRKGEREAELKAKFEQER 305
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + + L +F + + S V RD G S + +VNF N DAAKA+E
Sbjct: 34 SLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEV 93
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + T + N++IKNL ID++ L
Sbjct: 94 LNFTPLNGKPIRIMFSHRDP----------------TTRRSGHANVFIKNLDTKIDNKAL 137
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E F+ FG + SCKV D +G SKG GF+ F E+A A+ +NG ++ + +YV
Sbjct: 138 YETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFV 197
Query: 209 RKEER 213
R+ ER
Sbjct: 198 RRLER 202
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEAS 186
+F +LY+ +L ++ + +L +LFS+ + S +V RD +G+ S G +V FS P++A+
Sbjct: 29 QFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAA 88
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A+ +N + KP+ + + R R
Sbjct: 89 KAMEVLNFTPLNGKPIRIMFSHRDPTTR 116
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 271/478 (56%), Positives = 336/478 (70%), Gaps = 21/478 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VGHF+R QER A ++F NV+VKNL E+TTD+DLK +F +GTITSA+V
Sbjct: 186 MLLNDKQVYVGHFIRHQER-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIV 244
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFE 119
M D +GKSKCFGFVNF+N D AA AVE L+G DD+ YVG+AQ+K+ERE ELK +FE
Sbjct: 245 MTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFE 304
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q K +K QG NLYIKNL D IDDEKLKELFSE+GTITSCKVM D G+SKGSGFVAF
Sbjct: 305 QERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAF 364
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
S+P+EA++AL EMNGKM KPLYVAVAQRKEER+ARLQAQF+Q+R S+P +P
Sbjct: 365 SSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPG 424
Query: 240 YPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQG 295
+ PG + + QQ YGQ P + PPQ AG+G+Q QL+ GMRP PNF +P QG
Sbjct: 425 FHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMG--PNFLMPYQFQRQG 482
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFP-FDMGAGS-ML 352
Q G R G RRG QQ LP+ + G ++RY RN + P G S M+
Sbjct: 483 QPGPRLGVRRGGNSQPLPQQQLPLRGY-----GQSFRYMNNARNGLETPVLPQGLVSPMM 537
Query: 353 PVPVDMGAGI--PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
P+ D G+G+ P D + +P + L++ALA+AS E QR +LGE LYPLVE+LE A
Sbjct: 538 PLAFD-GSGVSSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHA 596
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
AKVTGMLLEMDQ EVLHL+ESP+ LK+KVAEAMEVLR + + +DQL +L+L +
Sbjct: 597 AKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEP--ELSDQLGALTLTK 652
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 21 TVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVN 75
TVA+ T ++++V +LD+S + L ++FG+ + S V RD + S + +VN
Sbjct: 23 TVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVN 82
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 135
F + DA A+E LN + + + + + ++ K N++
Sbjct: 83 FSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDP----------------SIRKSGYANVF 126
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L++ F+ FGT+ SCKV D +G SKG GFV F + E A ++ ++NG
Sbjct: 127 IKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGM 186
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQM 224
++ K +YV R +ER +QF+ +
Sbjct: 187 LLNDKQVYVGHFIRHQERIRANGSQFTNV 215
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/478 (56%), Positives = 336/478 (70%), Gaps = 21/478 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VGHF+R QER A ++F NV+VKNL E+TTD+DLK +F +GTITSA+V
Sbjct: 186 MLLNDKQVYVGHFIRHQER-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIV 244
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFE 119
M D +GKSKCFGFVNF+N D AA AVE L+G DD+ YVG+AQ+K+ERE EL+ +FE
Sbjct: 245 MTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFE 304
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q K +K QG NLYIKNL D IDDEKLKELFSE+GTITSCKVM D G+SKGSGFVAF
Sbjct: 305 QERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAF 364
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
S+P+EA++AL EMNGKM KPLYVAVAQRKEER+ARLQAQF+Q+R S+P +P
Sbjct: 365 SSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPG 424
Query: 240 YPPGPSGLG-QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQG 295
+ PG + + QQ YGQ P + PPQ AG+G+Q QL+ GMRP PNF +P QG
Sbjct: 425 FHPGAARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMG--PNFLMPYQFQRQG 482
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFP-FDMGAGS-ML 352
Q G R G RRG QQ LP+ + G ++RY RN + P G S M+
Sbjct: 483 QPGPRSGVRRGGNSQPLPQQQLPLRGY-----GQSFRYMNNARNGLESPVLPQGLVSPMM 537
Query: 353 PVPVDMGAGI--PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
P+ D G+G+ P D + +P + L++ALA+AS E QR +LGE LYPLVE+LE A
Sbjct: 538 PLAFD-GSGVSSPPNDIQRSRAVPTSTLASALASASLENQRVMLGEQLYPLVERLEPSHA 596
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
AKVTGMLLEMDQ EVLHL+ESP+ LK+KVAEAMEVLR + + +DQL +L+L +
Sbjct: 597 AKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEP--ELSDQLGALTLTK 652
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 21 TVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVN 75
TVA+ T ++++V +LD+S + L ++FG+ + S V RD + S + +VN
Sbjct: 23 TVAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVN 82
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 135
F + DA A+E LN + + + + + ++ K N++
Sbjct: 83 FSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDP----------------SIRKSGYANVF 126
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L++ F+ FGT+ SCKV D +G SKG GFV F + E A ++ ++NG
Sbjct: 127 IKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGM 186
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQM 224
++ K +YV R +ER +QF+ +
Sbjct: 187 LLNDKQVYVGHFIRHQERIRANGSQFTNV 215
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/320 (75%), Positives = 271/320 (84%), Gaps = 2/320 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK V+VGHF RKQ+R+ KFNNV+VKNL ES TD+DLK FGEYGTITSAVV
Sbjct: 175 MLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFENAD AA+AVEALNGKKFDD+EWYVGKA KK ERE ELK + EQ
Sbjct: 235 MRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MKETVDKF G NLY+KNL DS+ DEKL ELFSEFGT+TSCK++RDP GIS+GSGFVAFS
Sbjct: 295 SMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+RALAEMNGKM+ KPLYVA AQ+KEER+ARL AQFSQ+RPV M P + PR+P Y
Sbjct: 355 TPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLPAQFSQVRPVTMAP-IAPRLPFY 413
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
P G G+GQQ +YGQAPPA I QAGFGY QQLVPGMRP GAPMPNFF+P+V QGQQGQR
Sbjct: 414 PAGVPGMGQQIMYGQAPPAFI-SQAGFGYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQR 472
Query: 301 PGGRRGAGPVQQTQQPLPIM 320
PGGRRGA P+QQ LP+M
Sbjct: 473 PGGRRGASPMQQLPHSLPMM 492
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD + + L F +G I S + D G SK +GFV FE
Sbjct: 101 HRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFE 160
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A A++ LNG +D+ YVG Q+K +R+ L KF N+Y+K
Sbjct: 161 NEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNA----------KFN--NVYVK 208
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S+ D+ LK F E+GTITS VMRD G SK GFV F + A+ A+ +NGK
Sbjct: 209 NLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKF 268
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
K YV A +K ER L+ + Q
Sbjct: 269 DDKEWYVGKALKKYERELELKERHEQ 294
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 18/206 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD TD L +F + G + S + RD +S +G+VNF N DAAKA++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ + + + +V K N++IKNL +ID + L
Sbjct: 85 LNFTPLNNKPIRIMYSHRDP----------------SVRKSGAANIFIKNLDRAIDHKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG+SKG GFV F E A A+ ++NG ++ KP+YV Q
Sbjct: 129 YDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQ 188
Query: 209 RKEERRARL-QAQFSQMRPVAMGPSV 233
RK++R L A+F+ + + SV
Sbjct: 189 RKQDRDNALSNAKFNNVYVKNLSESV 214
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 242/316 (76%), Positives = 275/316 (87%), Gaps = 2/316 (0%)
Query: 157 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
TITSCKVMRDPSGIS+GSGFVAFSTPEE++RAL+EMNGKM++SKPLYVA+AQRKEERRAR
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 217 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 276
LQAQFSQMRPVAM PS+ PRMPMYPPG G+GQQ YGQ PPA+IP QAGFGYQQQLVPG
Sbjct: 61 LQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAMIPSQAGFGYQQQLVPG 120
Query: 277 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG 336
MRP G PMPNFF+P+V QGQQGQRPGGRRG GP+QQ QQP+P+M QM PRG YR+P G
Sbjct: 121 MRPGGTPMPNFFMPMVQQGQQGQRPGGRRGGGPMQQAQQPVPVMQQQMMPRGRMYRFPPG 180
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
RN+ D P M G M VP DM +PR A++ QPMP+TAL++ALANA+PEQQRT+LGE
Sbjct: 181 RNVPDVP--MTGGGMFSVPYDMTGMLPRDAAAIPQPMPVTALASALANATPEQQRTMLGE 238
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 456
+LYPLV+QLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KV EAMEVLR+V QQ N+
Sbjct: 239 NLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKSKVNEAMEVLRNVQQQGNNS 298
Query: 457 PADQLASLSLNENLVS 472
PADQLASLSLN+NLVS
Sbjct: 299 PADQLASLSLNDNLVS 314
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
TITS VMRD G S+ GFV F +++A+A+ +NGK + YV AQ+K ER
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 114 LKGQFEQ 120
L+ QF Q
Sbjct: 61 LQAQFSQ 67
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 249/479 (51%), Positives = 315/479 (65%), Gaps = 29/479 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK+V+VG F+ +QER V KF NV+VKN E+ TDEDL+++F YGTITSAVV
Sbjct: 156 MLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVV 215
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFE 119
M+D DGKS+CFGFVNFE+ D A AVE LNG DD+ YVG+AQ+K+ERE ELK +FE
Sbjct: 216 MKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFE 275
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+K+ G NLY+KNL +I+D+KLKELFSEFGTITSCKVM +P+G SKG GFVAF
Sbjct: 276 LERIRKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAF 335
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
S P A+RAL EMNGKMI +PLYVAVAQRKEER+A L+AQFSQM + +P +P+
Sbjct: 336 SAPRNANRALHEMNGKMIGRRPLYVAVAQRKEERKALLEAQFSQMHALYAITHLPTGIPV 395
Query: 240 YPPGPSGLGQQFL-YGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
Y PG G Q L YGQ P+++ PQ G+G+QQQL+PGM P A PNF +P +Q
Sbjct: 396 YHPGAPRHGPQALHYGQGAPSLVAPQPTGYGFQQQLLPGMHPGVA--PNFIMPY---HRQ 450
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD---FPFDMGAGSMLPV 354
Q P R + + Q M H +G Y G+N D P + A M+P+
Sbjct: 451 RQVPPRLRN---LHRNQ-----MLHLNSSQGFGYM-GNGQNGMDPSVVPHGIVA-PMMPL 500
Query: 355 PVDMGAGI---PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA-- 409
P D G+GI P + G + T ++ALA+A+PE Q +L E LYPLV+++ ++
Sbjct: 501 PFD-GSGISAAPTYNQHPGGSLSNT-FASALASATPENQHLMLAEHLYPLVDEITKNHHQ 558
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 468
KVTGMLLEMDQ+EV+HL ESPE LK KV EAM+ L A + DQL S+SL E
Sbjct: 559 TEKVTGMLLEMDQSEVIHLTESPEDLKIKVFEAMQALGEAA-PDSEEVGDQLGSVSLKE 616
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 117/205 (57%), Gaps = 19/205 (9%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ + NVF+KNLD S ++ L F +G + S+ V D G+SK +GFV F+N + A
Sbjct: 89 KSGYANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQN 148
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGLNLYIKNLGD 141
A++ LNG +D++ YVG + ER Q VD KF N+Y+KN +
Sbjct: 149 AIKELNGMLINDKKVYVGLFVNRQERAQ-------------VDGSPKFT--NVYVKNFSE 193
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SK 200
+ DE L++LFS +GTITS VM+D G S+ GFV F +P+ A A+ +NG + K
Sbjct: 194 TYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDK 253
Query: 201 PLYVAVAQRKEERRARLQAQFSQMR 225
LYV AQRK ER A L+A+F R
Sbjct: 254 VLYVGRAQRKAEREAELKARFELER 278
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
+++V +L+ + + L ++F G I S V RD +S + +VNF N DAA A+E L
Sbjct: 7 SLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHL 66
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + V + + ++ K N++IKNL SID++ L
Sbjct: 67 NFTPLNGKSIRVMFSNRDP----------------SIRKSGYANVFIKNLDISIDNKTLH 110
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F+ FG + S KV D G SKG GFV F E A A+ E+NG +I K +YV +
Sbjct: 111 DTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVN 170
Query: 210 KEER 213
++ER
Sbjct: 171 RQER 174
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/470 (52%), Positives = 302/470 (64%), Gaps = 70/470 (14%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
++DKQ+FVG F+R+QER+ A +KFNNVFVKNL E TTDEDL+K+FG +G I+SAVVM+
Sbjct: 168 LHDKQLFVGPFVRRQERDPPA--SKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMK 225
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
+ DGKSKCFGFVNFEN +DA KAVE L+G F D+E YV +AQKK+ERE ELK +FE
Sbjct: 226 EVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHER 285
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
K+T DK NLY+KNL D IDDEKLK++FS FG +TSCKVMRDP G SKGSGFVAFST
Sbjct: 286 KDTEDK-SPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTS 344
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 242
+ A RA+A+MNGKMI SKPLYVA+AQ+KEER+A+L+AQF+ PV P PP
Sbjct: 345 DAALRAVAQMNGKMIGSKPLYVAMAQKKEERKAKLEAQFASRGPVNFPP---------PP 395
Query: 243 GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG 302
S +GQQ LY + P + AGF +RP MP FF P
Sbjct: 396 LYSAVGQQLLYSRPAPMVPQQPAGFAM-------VRPNVGQMPGFFPP------------ 436
Query: 303 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI 362
Q QQ GHA R P + MQ G+ S P
Sbjct: 437 ---------QRQQ------------GHA-RVPFQQFMQRESTFHGSNSRTP--------- 465
Query: 363 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
+ G + L++ LA+A+PEQQR +LGE LYPLV+ +E + A K+TGMLLEMDQ
Sbjct: 466 -----AYGNNSFLAVLASHLASATPEQQRIMLGEQLYPLVDCIEHNHAGKITGMLLEMDQ 520
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
TEVLHLLESPEAL KV+EAMEVLR QQ P D LASLSL++ L+S
Sbjct: 521 TEVLHLLESPEALNLKVSEAMEVLRD--SQQRLIPPD-LASLSLDDPLMS 567
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 109/196 (55%), Gaps = 14/196 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +F YG I S + D SK GFV F+ D A A+E +
Sbjct: 104 NLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKI 163
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG D++ +VG ++ ER+ KF N+++KNL + DE L+
Sbjct: 164 NGTTLHDKQLFVGPFVRRQERD------------PPASKFN--NVFVKNLSEITTDEDLQ 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF FG I+S VM++ G SK GFV F PE+A +A+ +++G K LYV+ AQ+
Sbjct: 210 KLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQK 269
Query: 210 KEERRARLQAQFSQMR 225
K ER A L+A+F R
Sbjct: 270 KNEREAELKAKFEHER 285
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 89
++V +LD S + + IF + G + S + RD K S + +VN+ N DA++A+E L
Sbjct: 17 LYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAIEEL 76
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + + + + + G NL++KNL SID++ L
Sbjct: 77 NFMPVNGKPVRIMFSYRDPSIRKSGSG----------------NLFVKNLDKSIDNKALH 120
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LFS +G I SCK+ D S +SKG GFV F T + A A+ ++NG + K L+V R
Sbjct: 121 DLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVR 180
Query: 210 KEER 213
++ER
Sbjct: 181 RQER 184
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/267 (74%), Positives = 230/267 (86%), Gaps = 1/267 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDK+V+VG F+RKQERE V+ KFNNV+VKNL ESTT+++LK+IFG++G ITS VV
Sbjct: 190 MLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVV 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MR+GDGKS+CFGFVNFEN DDAA+AVE LNGKKFDD+EWYV +AQKKSERE ELK +FE+
Sbjct: 250 MREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEK 309
Query: 121 AMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+KE DK QG NLY+KNL DSI DDEKLKE+F++FGTITSCKVMRD +G+SKGSGFVAF
Sbjct: 310 NIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAF 369
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ E+ASRAL MNGKMI SKPLYVA+AQRKEERRARLQAQFSQMRP+ M PSV PRMPM
Sbjct: 370 KSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPM 429
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAG 266
YPPG G+GQQ YGQ PPA + PQ G
Sbjct: 430 YPPGVPGVGQQLFYGQPPPAFVNPQLG 456
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ N+F+KNLD+S ++ L F +G I S V + G+SK +GFV FE
Sbjct: 117 RDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFEL 176
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+ LNG +D++ YVG +K ERE + G KF N+Y+KN
Sbjct: 177 EEAAQNAISKLNGMLLNDKKVYVGPFVRKQEREN-VSGN---------PKFN--NVYVKN 224
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +S ++ LKE+F +FG ITS VMR+ G S+ GFV F P++A+RA+ ++NGK
Sbjct: 225 LSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFD 284
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
K YV AQ+K ER L+ +F +
Sbjct: 285 DKEWYVCRAQKKSEREMELKEKFEK 309
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 19/186 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +LD S D L +F + G++ S V RD + + S + +VNF + DAA+A+E
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + + + + S R K N++IKNL SID++
Sbjct: 100 LNFTPINGKPIRIMYSNRDPSSR-----------------KSGAANIFIKNLDKSIDNKA 142
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV + SG SKG GFV F E A A++++NG ++ K +YV
Sbjct: 143 LYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPF 202
Query: 208 QRKEER 213
RK+ER
Sbjct: 203 VRKQER 208
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
FQ +LY+ +L S+ D +L ++FS+ G++ S +V RD + +S G +V FS+P +A+R
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I KP+ + + R R
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSR 122
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/484 (51%), Positives = 321/484 (66%), Gaps = 22/484 (4%)
Query: 1 MLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 57
ML+NDKQVFVGHF+R+Q+R E+ A+ +F NV+VKNL + TD++LKK FG+YG I+S
Sbjct: 208 MLLNDKQVFVGHFVRRQDRSRSESGAVP-RFTNVYVKNLPKEITDDELKKTFGKYGDISS 266
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
AVVM+D G S+ FGFVNFE+ + AA AVE +NG + YVG+AQKKSERE+EL+ +
Sbjct: 267 AVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRAQKKSEREEELRRK 326
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ +K QG NLY+KNL DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFV
Sbjct: 327 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 386
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPR 236
A+S+PEEASRAL+EMNGKMI KPLYVA AQRKEERRA LQ F+ +R P M P +P
Sbjct: 387 AYSSPEEASRALSEMNGKMIGRKPLYVAFAQRKEERRAHLQTLFTHIRSPGTMSP-IPSP 445
Query: 237 MP---MYPPGP--SGLGQQFLY-GQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 289
MP +PPG SG +Y GQ ++PPQ G+GYQ Q +PG+RP P N+ +
Sbjct: 446 MPGFHHHPPGGPMSGPHHPTMYIGQNGQGLVPPQPMGYGYQVQFMPGVRPGAGPA-NYMM 504
Query: 290 --PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG 347
P+ Q Q G R G RRGA +QQ Q I+ P RY G + +
Sbjct: 505 PFPLQRQTQPGPRVGFRRGANNMQQHFQQQQILQQNASP---GMRYMGGAGNRRNGMEAS 561
Query: 348 A-GSMLPVPVDMGAGIPRRDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQ 404
A ++P+P++ A +P + I+ L++ LA A PE+ +LGE+LYPLV Q
Sbjct: 562 APQGIIPLPLNASAISHNAPQHPHKPPLLTISKLASDLALAPPEKHPQMLGENLYPLVAQ 621
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
E + AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +L
Sbjct: 622 QEPEYAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRLSANAPAVSSVDDQFAL 681
Query: 465 SLNE 468
S E
Sbjct: 682 SSTE 685
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 115/196 (58%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 146 NVFIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKL 205
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ +R + G V +F N+Y+KNL I D++LK
Sbjct: 206 NGMLLNDKQVFVGHFVRRQDRSRSESG--------AVPRFT--NVYVKNLPKEITDDELK 255
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F ++G I+S VM+D SG S+ GFV F +PE A+ A+ +MNG + LYV AQ+
Sbjct: 256 KTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRAQK 315
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 316 KSEREEELRRKFEQER 331
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+++
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDS 117
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN DR + + + KG N++IKNL SID++ L
Sbjct: 118 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDPSIDNKAL 161
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 162 YETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 221
Query: 209 RKEER 213
R+++R
Sbjct: 222 RRQDR 226
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY+ +L S+D+ +L +LF++ + + +V RD + S G +V F+ PE+ASRA+ +
Sbjct: 59 SLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSL 118
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N I +P+ + ++ R R
Sbjct: 119 NYAPIRDRPIRIMLSNRDPSTR 140
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/467 (50%), Positives = 306/467 (65%), Gaps = 41/467 (8%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SA
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +F
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVA 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 379 YSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALFSQIR------------- 425
Query: 239 MYPPGP-SGLG-----------QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMP 285
PGP SG Q GQ +++P Q G+G+Q Q +PGMRP P
Sbjct: 426 --APGPMSGFHHPPGGPMSGPPQHMYVGQNGASLVPSQPIGYGFQPQFMPGMRPGSGP-G 482
Query: 286 NFFV--PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQD 341
NF + P+ Q Q G R G RRGA +Q Q +M ++ P G Y GRN D
Sbjct: 483 NFVMPYPLQRQPQTGPRMGFRRGATNMQHHIQQQQLM-NRNPTPGMRYMNGAGNGRNGMD 541
Query: 342 FPFDMGA-GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 400
G ++P+P+D + I + A + +PI+ L+++LA+ASP + +LGE LYP
Sbjct: 542 SSVPQGILPPIMPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYP 597
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
LVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 598 LVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER A E + N+Y+KNL I +++L+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER----------ARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F +FG I+S VMRD SG S+ GFV F E A+ A+ +MNG + LYV AQ+
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 307 KSEREEELRRKFEQER 322
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 17/193 (8%)
Query: 22 VAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 80
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N +
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 81 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140
DA +A+EALN +R + + + KG N++IKNL
Sbjct: 101 DAYRAMEALNYTPLFERPIRIMLSNRDPSTRLSGKG----------------NIFIKNLD 144
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++ K
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Query: 201 PLYVAVAQRKEER 213
++V R++ER
Sbjct: 205 QVFVGHFIRRQER 217
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY +L + + L +LF + S +V RD + S G ++ FS P +A RA+ +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + +P+ + ++ R R
Sbjct: 110 NYTPLFERPIRIMLSNRDPSTR 131
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 237/466 (50%), Positives = 301/466 (64%), Gaps = 39/466 (8%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SA
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +F
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR------------- 425
Query: 239 MYPPGP-SGLG-----------QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMP 285
PGP SG Q GQ +++P Q G+G+Q Q +PGMRP P
Sbjct: 426 --APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-G 482
Query: 286 NFFV--PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQD 341
NF V P+ Q Q G R G RRGA VQQ Q +M H+ P G Y GRN D
Sbjct: 483 NFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMD 541
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
G + + I + A + +PI+ L+++LA+ASP + +LGE LYPL
Sbjct: 542 SSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPL 598
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
VE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 599 VERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER A E + N+Y+KNL I +++L+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER----------ARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F +FG I+S VMRD SG S+ GFV F E A+ A+ +MNG + LYV AQ+
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 307 KSEREEELRRKFEQER 322
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 21 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 200 KPLYVAVAQRKEER 213
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY +L + + L +LF + S +V RD + S G ++ FS P +A RA+ +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + +P+ + ++ R R
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR 131
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 237/466 (50%), Positives = 301/466 (64%), Gaps = 39/466 (8%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SA
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +F
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR------------- 425
Query: 239 MYPPGP-SGLG-----------QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMP 285
PGP SG Q GQ +++P Q G+G+Q Q +PGMRP P
Sbjct: 426 --APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-G 482
Query: 286 NFFVP--VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQD 341
NF VP + Q Q G R G RRGA VQQ Q +M H+ P G Y GRN D
Sbjct: 483 NFIVPYSLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMD 541
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
G + + I + A + +PI+ L+++LA+ASP + +LGE LYPL
Sbjct: 542 SSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPL 598
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
VE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 599 VERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER A E + N+Y+KNL I +++L+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER----------ARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F +FG I+S VMRD SG S+ GFV F E A+ A+ +MNG + LYV AQ+
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 307 KSEREEELRRKFEQER 322
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 21 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 200 KPLYVAVAQRKEER 213
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY +L + + L +LF + S +V RD + S G ++ FS P +A RA+ +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + +P+ + ++ R R
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR 131
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 244/484 (50%), Positives = 320/484 (66%), Gaps = 26/484 (5%)
Query: 1 MLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 57
ML+NDKQVFVGHF+R+Q+R E+ A+ + F NV+VKNL + TD++LKK FG+YG I+S
Sbjct: 209 MLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISS 267
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
AVVM+D G S+ FGFVNF + + AA AVE +NG + YVG+AQKKS+RE+EL+ +
Sbjct: 268 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRK 327
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ +K QG NLY+KNL DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFV
Sbjct: 328 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 387
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPR 236
A+S PEEA A+ EMNGKMI KPLYVA+AQRKEER+A LQ+ F+Q+R P M P VP
Sbjct: 388 AYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSP 446
Query: 237 MP---MYPPGP--SGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV- 289
M +PPG SG G ++P Q G+GYQ Q +PGMRP P PNF +
Sbjct: 447 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMP 505
Query: 290 -PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
P+ Q Q G R G RRGA +QQ Q Q + +A R+ G + + A
Sbjct: 506 FPLQRQTQPGPRVGFRRGANNMQQQFQ------QQQMLQQNASRFMGGAGNRRNGMEASA 559
Query: 349 -GSMLPVPVDMGA---GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 404
++P+P++ A P+R + P+ I+ L++ LA ASP++ +LG+ LYPLVEQ
Sbjct: 560 PQGIIPLPLNASANSHNAPQR-SHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQ 618
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
E AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +L
Sbjct: 619 QEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFAL 678
Query: 465 SLNE 468
S +E
Sbjct: 679 SSSE 682
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ +R + G V F N+Y+KNL I D++LK
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESG--------AVPSFT--NVYVKNLPKEITDDELK 256
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F ++G I+S VM+D SG S+ GFV F +PE A+ A+ +MNG + LYV AQ+
Sbjct: 257 KTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 316
Query: 210 KEERRARLQAQFSQMR 225
K +R L+ +F Q R
Sbjct: 317 KSDREEELRRKFEQER 332
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN DR + + + KG N++IKNL SID++ L
Sbjct: 119 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 209 RKEER 213
R+++R
Sbjct: 223 RRQDR 227
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY+ +L S+++ L +LF++ + + +V RD + S G +V F+ PE+ASRA+ +
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N I +P+ + ++ R R
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTR 141
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 244/484 (50%), Positives = 320/484 (66%), Gaps = 26/484 (5%)
Query: 1 MLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 57
ML+NDKQVFVGHF+R+Q+R E+ A+ + F NV+VKNL + TD++LKK FG+YG I+S
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISS 253
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
AVVM+D G S+ FGFVNF + + AA AVE +NG + YVG+AQKKS+RE+EL+ +
Sbjct: 254 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRK 313
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ +K QG NLY+KNL DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFV
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPR 236
A+S PEEA A+ EMNGKMI KPLYVA+AQRKEER+A LQ+ F+Q+R P M P VP
Sbjct: 374 AYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSP 432
Query: 237 MP---MYPPGP--SGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV- 289
M +PPG SG G ++P Q G+GYQ Q +PGMRP P PNF +
Sbjct: 433 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMP 491
Query: 290 -PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
P+ Q Q G R G RRGA +QQ Q Q + +A R+ G + + A
Sbjct: 492 FPLQRQTQPGPRVGFRRGANNMQQQFQ------QQQMLQQNASRFMGGAGNRRNGMEASA 545
Query: 349 -GSMLPVPVDMGA---GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 404
++P+P++ A P+R + P+ I+ L++ LA ASP++ +LG+ LYPLVEQ
Sbjct: 546 PQGIIPLPLNASANSHNAPQR-SHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQ 604
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
E AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +L
Sbjct: 605 QEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFAL 664
Query: 465 SLNE 468
S +E
Sbjct: 665 SSSE 668
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ +R + G V F N+Y+KNL I D++LK
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESG--------AVPSFT--NVYVKNLPKEITDDELK 242
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F ++G I+S VM+D SG S+ GFV F +PE A+ A+ +MNG + LYV AQ+
Sbjct: 243 KTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 302
Query: 210 KEERRARLQAQFSQMR 225
K +R L+ +F Q R
Sbjct: 303 KSDREEELRRKFEQER 318
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN DR + + + KG N++IKNL SID++ L
Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 148
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 209 RKEER 213
R+++R
Sbjct: 209 RRQDR 213
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY+ +L S+++ L +LF++ + + +V RD + S G +V F+ PE+ASRA+ +
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N I +P+ + ++ R R
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTR 127
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 243/484 (50%), Positives = 319/484 (65%), Gaps = 26/484 (5%)
Query: 1 MLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 57
ML+NDKQVFVGHF+R+Q+R E+ A+ + F NV+VKNL + TD++LKK FG+YG I+S
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISS 253
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
AVVM+D G S+ FGFVNF + + AA AVE +NG + YVG+AQKKS+RE+EL+ +
Sbjct: 254 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRK 313
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ +K QG NLY+KNL DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFV
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPR 236
A+S PEEA A+ EMNGKMI KPLYVA+AQRKEER+A LQ+ F+Q+R P M P VP
Sbjct: 374 AYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSP 432
Query: 237 MP---MYPPGP--SGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV- 289
M +PPG SG G ++P Q G+GYQ Q +PGMRP P PNF +
Sbjct: 433 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMP 491
Query: 290 -PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
P+ Q Q G R G RRGA +QQ Q Q + +A R+ G + + A
Sbjct: 492 FPLQRQTQPGPRVGFRRGANNMQQQFQ------QQQMLQQNASRFMGGAGNRRNGMEASA 545
Query: 349 -GSMLPVPVDMGA---GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 404
++P+P++ A P+R + P+ I+ L++ LA ASP++ +LG+ LYPLVEQ
Sbjct: 546 PQGIIPLPLNASANSHNAPQR-SHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQ 604
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
E AKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +L
Sbjct: 605 QEPANPAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFAL 664
Query: 465 SLNE 468
S +E
Sbjct: 665 SSSE 668
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ +R + G V F N+Y+KNL I D++LK
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESG--------AVPSFT--NVYVKNLPKEITDDELK 242
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F ++G I+S VM+D SG S+ GFV F +PE A+ A+ +MNG + LYV AQ+
Sbjct: 243 KTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 302
Query: 210 KEERRARLQAQFSQMR 225
K +R L+ +F Q R
Sbjct: 303 KSDREEELRRKFEQER 318
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN DR + + + KG N++IKNL SID++ L
Sbjct: 105 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 148
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 209 RKEER 213
R+++R
Sbjct: 209 RRQDR 213
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY+ +L S+++ L +LF++ + + +V RD + S G +V F+ PE+ASRA+ +
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N I +P+ + ++ R R
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTR 127
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 232/466 (49%), Positives = 296/466 (63%), Gaps = 44/466 (9%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SA
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +F
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQ +
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQIR------------------ 420
Query: 239 MYPPGP-SGLG-----------QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMP 285
PGP SG Q GQ +++P Q G+G+Q Q +PGMRP P
Sbjct: 421 --APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-G 477
Query: 286 NFFV--PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY--PLGRNMQD 341
NF V P+ Q Q G R G RRGA VQQ Q +M H+ P G Y GRN D
Sbjct: 478 NFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMD 536
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
G + + I + A + +PI+ L+++LA+ASP + +LGE LYPL
Sbjct: 537 SSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPL 593
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
VE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 594 VERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 639
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER A E + N+Y+KNL I +++L+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER----------ARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F +FG I+S VMRD SG S+ GFV F E A+ A+ +MNG + LYV AQ+
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 307 KSEREEELRRKFEQER 322
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 21 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 200 KPLYVAVAQRKEER 213
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY +L + + L +LF + S +V RD + S G ++ FS P +A RA+ +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + +P+ + ++ R R
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR 131
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/257 (73%), Positives = 217/257 (84%), Gaps = 1/257 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK V+VG FLRKQER+ + K KFNNVFVKNL ESTT EDL K+F EYGTITSAVV
Sbjct: 273 MLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVV 332
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGFVNFE+ DDAA+AVE LNGKK +D+EWYVG+AQKKSERE +LK +FEQ
Sbjct: 333 MIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQ 392
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+MK+ DK+QG NLY+KNL D I D++L+ELFS FG ITSCK+MRD +G+SKGSGFV+FS
Sbjct: 393 SMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFS 452
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+AL EMNGKMI KPLYVA AQRKEER+A LQAQFSQMRPV M PS+ PR+PMY
Sbjct: 453 TREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMY 512
Query: 241 PPGPSGLGQQFLYGQAP 257
PP P+ LGQQ YGQAP
Sbjct: 513 PPMPT-LGQQLFYGQAP 528
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 114/194 (58%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ ++ L F +G I S V D G+SK FGFV +E + A A+++L
Sbjct: 211 NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSL 270
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ YVG +K ER+ + DK + N+++KNL +S E L
Sbjct: 271 NGMLINDKPVYVGPFLRKQERDN------------SSDKAKFNNVFVKNLSESTTKEDLI 318
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++FSE+GTITS VM G S+ GFV F +P++A+RA+ E+NGK I K YV AQ+
Sbjct: 319 KVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQK 378
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 379 KSEREMDLKRRFEQ 392
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L+ + TD L ++F + G + S V RD + + S + +VN+ N DAA+A+EA
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +++ V + + + N++IKNL +ID++ L
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSRRS----------------GSANIFIKNLDKTIDNKTL 226
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV + E A A+ +NG +I KP+YV
Sbjct: 227 HDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFL 286
Query: 209 RKEER 213
RK+ER
Sbjct: 287 RKQER 291
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L ++ D +L ELFS+ G + S +V RD S S G +V +S P +A+RA+
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + +KP+ V + R R
Sbjct: 183 LNFAPLNNKPIRVMYSNRDPSSR 205
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/265 (68%), Positives = 223/265 (84%), Gaps = 2/265 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQVFVG F+R+QER+ +KFNNV+VKNL + TTD++LKK+FG +G I+SAVV
Sbjct: 175 MLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVV 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFE+ DDAAKAVEAL GKKFD++EWYVG+AQKKSERE EL+ +FEQ
Sbjct: 235 MRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQ 294
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
KE ++K+QG+NLY+KNL D++DDEK++ELF+E+GTITSCKVMRD G SKGSGFVAFS
Sbjct: 295 ERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFS 354
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+P+EA+RA+ EMNGKM+ +KPLYVA+AQRKEERR RLQA F+QMR +GP+VP +PMY
Sbjct: 355 SPDEATRAVTEMNGKMVGNKPLYVALAQRKEERRMRLQAAFAQMR-THVGPAVPTSLPMY 413
Query: 241 PPGPSGLGQQF-LYGQAPPAIIPPQ 264
PG G+G Q YGQ PP IP Q
Sbjct: 414 HPGAPGMGPQMSYYGQHPPGPIPLQ 438
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 114/196 (58%), Gaps = 12/196 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ L F +G I S V D G+SK +GFV FE + A A+E +
Sbjct: 113 NIFIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKV 172
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER+Q V KF N+Y+KNL D D++LK
Sbjct: 173 NGMLLNDKQVFVGPFVRRQERDQ----------AGGVSKFN--NVYVKNLADVTTDDELK 220
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++F +G I+S VMRD G SK GFV F P++A++A+ + GK K YV AQ+
Sbjct: 221 KVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQK 280
Query: 210 KEERRARLQAQFSQMR 225
K ER A L+A+F Q R
Sbjct: 281 KSEREAELRAKFEQER 296
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + ++ L ++F + G + S V RD +S + +VN+ NA DA +A+E
Sbjct: 25 SLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALEL 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + ++ K N++IKNL SID++ L
Sbjct: 85 LNFTGVNGKPIRIMFSHRDP----------------SIRKSGTANIFIKNLDKSIDNKAL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D SG SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 129 HDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFV 188
Query: 209 RKEER 213
R++ER
Sbjct: 189 RRQER 193
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 186
+F +LY+ +L ++ + +L E+FS+ G + S +V RD + S G +V ++ ++A+
Sbjct: 20 QFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDAT 79
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
RAL +N + KP+ + + R
Sbjct: 80 RALELLNFTGVNGKPIRIMFSHR 102
>gi|294461458|gb|ADE76290.1| unknown [Picea sitchensis]
Length = 313
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 220/315 (69%), Positives = 255/315 (80%), Gaps = 8/315 (2%)
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
MRD G SKGSGFVAFS+P+EASRALAEMNGK++VSKPLYVA+AQRKEERRARLQAQFSQ
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
Query: 224 MR-PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAG 281
+R PV M P+VP R+PMYPPG GL QQ YGQ PPA+IPPQA GFGYQQQL+PGMRP
Sbjct: 61 LRNPVGMAPAVPARVPMYPPGGPGLNQQIFYGQGPPALIPPQAAGFGYQQQLIPGMRPGS 120
Query: 282 APMPNFFVPVV-SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH-AYRYPLGRNM 339
AP+PNF++P++ +Q Q A QQ QQ LP++ QM PRG+ YRYP GRN+
Sbjct: 121 APIPNFYLPLMQAQQGQRPGGRRGGVAPIQQQPQQQLPLLQQQMLPRGNRVYRYPPGRNV 180
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPRRDA--SVGQPMPITALSTALANASPEQQRTLLGES 397
+ P AG M P+P+DMG G+P R A ++ QP+PI AL++ALANA+PEQQRT+LGES
Sbjct: 181 NEIPLSGVAGGMHPLPLDMG-GLPLRAAETTISQPIPIGALASALANATPEQQRTMLGES 239
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR+V Q QA NP
Sbjct: 240 LYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVTQAQA-NP 298
Query: 458 ADQLASLSLNENLVS 472
A+QLA+LSLNE LVS
Sbjct: 299 AEQLAALSLNETLVS 313
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD G SK GFV F + D+A++A+ +NGK + YV AQ+K ER L+ QF Q
Sbjct: 1 MRDFHGHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 223/455 (49%), Positives = 291/455 (63%), Gaps = 24/455 (5%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L+NDK+V+VG+F+R QER + KF NV+VKNL ES T+EDLK++F +G ITS +M
Sbjct: 177 LMNDKKVYVGYFVRCQERSS----PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIM 232
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQ 120
+D +G SK FGFVNF+++D AA AVE LNG +D + +VG+AQKKSERE ELK FEQ
Sbjct: 233 KDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQ 292
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ +KFQG NLY+KN+ S+++EKLKELFSEFGTITSCKVM D G SKG GFVAF+
Sbjct: 293 EKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFT 352
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEAS+A+ EMNGK+I KP+YV+VAQRKEER+A+LQA F ++ +
Sbjct: 353 TPEEASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQLQAHFPAIQVSGGNAGYHSSVQRL 412
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVP--VVSQGQQ 297
P QQF Y Q ++ PQ G+G++ + + + P G PN+ +P + QG
Sbjct: 413 AP------QQFYYEQGTFDLMAPQPNGYGFRPKFMSDVGP-GFVTPNYLLPYHLQRQGHP 465
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 357
G R GGR AG QQ +Q M + P +G Y G+N D G+ M P
Sbjct: 466 GNRMGGRP-AGNFQQVRQKKNQMLPRNPNQGLKYN---GQNGVGMSVDPGSQLMDP---S 518
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGM 416
A + G P+ +L++ALA+AS E Q +L E L+PLV +L AKVT M
Sbjct: 519 ASAATSTGNHHHG-PLSNNSLASALASASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRM 577
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
LLEMDQ+EV+HL+ESPE LK KVAEAM LR +Q
Sbjct: 578 LLEMDQSEVIHLIESPEELKMKVAEAMRFLRDASQ 612
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 17/207 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ + KT F N+F+KNL+ S ++ L + F +G + S V D +G SK GFV F+
Sbjct: 102 HRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFD 161
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A A+E L+G+ +D++ YV G F + + + KF N+Y+K
Sbjct: 162 NDQSAKNAIEKLDGRLMNDKKVYV--------------GYFVRCQERSSPKF--TNVYVK 205
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S +E LK+LF+ FG ITS K+M+D +G SK GFV F + + A+ A+ ++NG
Sbjct: 206 NLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTT 265
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQ 223
K L+V AQ+K ER A L+A F Q
Sbjct: 266 NDGKVLFVGRAQKKSEREAELKAFFEQ 292
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 17/196 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENA 79
T A + + ++++V +L + D L +F + + S V RD +S +G+VN+ NA
Sbjct: 17 TSAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNA 76
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DAA A+E LN + + + + + + K NL+IKNL
Sbjct: 77 RDAANAMENLNYVPLNGKPIRIMFSHRDP----------------LIRKTGFANLFIKNL 120
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L E FS FG + SCKV D +G SKG GFV F + A A+ +++G+++
Sbjct: 121 ETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMND 180
Query: 200 KPLYVAVAQRKEERRA 215
K +YV R +ER +
Sbjct: 181 KKVYVGYFVRCQERSS 196
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 209/459 (45%), Positives = 273/459 (59%), Gaps = 44/459 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML ND+++FVG +R++ RE KF NV++KNL +D+DL++ F +G ITSAVV
Sbjct: 188 MLANDREMFVGLHMRRRNREV-----KFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVV 242
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +G SKCFGFVNFE + A +AV+ NGK +D+ YVG+AQKK+ER+ ELK +F+Q
Sbjct: 243 MRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQ 302
Query: 121 AMKET-VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
++ VDK G+NLY+KN+ DSI+DE LK LF EFG +TSCKVM D G SKGSGFV F
Sbjct: 303 EDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLF 362
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+T E A+ MNG+++ KPLYV +AQ KEERRA L A F+Q R +AM S
Sbjct: 363 ATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQ-RNLAMAAS------- 414
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAG-FGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
P QQ +G P IPPQA FG+ Q VP M P M + Q
Sbjct: 415 ----PYAGPQQVYFGHPAPGQIPPQAAVFGFPQHFVPAMGPVSPVM-------MPHNMQR 463
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
R +R GP QQ I + H RY +P +MLP
Sbjct: 464 SRYPRQRTGGPAAYRQQQAMIHANA----NHNIRYMPNARHGAYP------AMLP----- 508
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G P A V Q ++++TA+A+A P Q+ +LG LY LVEQLE D A KVTGMLL
Sbjct: 509 -QGFP--SAMVSQQHDGSSITTAVASAEPADQQQILGNKLYALVEQLEHDHAGKVTGMLL 565
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
EMD+ ++L LL+SPE L+AKV EAM+VL+ + + +P
Sbjct: 566 EMDKVKILQLLQSPEVLRAKVREAMDVLQRTKAEGSADP 604
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAV 86
++++V +L ES + L +F + + S V RD G S +G+VNF + +A A+
Sbjct: 36 ISSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCAL 95
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
EALN + V S R+ L+ K NL++KNL SID +
Sbjct: 96 EALNFAPLSGKHIRV----MFSNRDPSLR------------KSGRANLFVKNLEPSIDSK 139
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L E+FS FGTI SCKV D +G SKG GFV + T E A A+ +NG + + ++V +
Sbjct: 140 NLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGL 199
Query: 207 AQRKEERRARLQAQFSQMRPV 227
R+ R + + + P
Sbjct: 200 HMRRRNREVKFTNVYIKNLPT 220
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 208/451 (46%), Positives = 275/451 (60%), Gaps = 28/451 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N +++FVG F+R+QERE F NV+VKNL + +D DL F +G ITSA+V
Sbjct: 212 MLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIV 271
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +G S+CFGFVNFE ++ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 272 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 331
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ +K Q +NLY+KNL D I+DE L++LF FG + SCKVM D G SKG GFV+F+
Sbjct: 332 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 391
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPM 239
T E+A+ A+ +MNGKM+ KPLYVAVAQRKEER+A L A F+++R +A M P++
Sbjct: 392 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTL------ 445
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
GP+ QF +G PA+ PP G+ Q P +PN +P Q Q GQ
Sbjct: 446 ---GPNIAPHQFNFGHGVPALFPPPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQ 494
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 356
R G G P PHQM + +R+ P RN P + P+
Sbjct: 495 RSGPPHGGMPRHLHN------PHQMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPM 548
Query: 357 DMGAGIPRRDASVGQ-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+ VG+ P L T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTG
Sbjct: 549 QPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTG 608
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
MLLE+D+TEVL+L+ESP+ L+ KVAEAM+VL
Sbjct: 609 MLLELDKTEVLNLVESPDTLRDKVAEAMKVL 639
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ NVF+KNL+ + ++ L ++F +GTI S+ V D +GKSK +GF+ FE+
Sbjct: 139 RDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFES 198
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
A A+ LNG + ++ +VG ++ ERE T D N+Y+KN
Sbjct: 199 ESSAKDAINGLNGMLANGQKIFVGLFIRRQEREH------------TGDANNFTNVYVKN 246
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D L FS FG ITS VMRD +G+S+ GFV F E A A+ +NGK I
Sbjct: 247 LPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIG 306
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
LYVA AQ+K ER+A L+A+F
Sbjct: 307 DMVLYVARAQKKSERQAELKAKFEH 331
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEA 88
++V +L+ S ++ L +F + + SA V RD G KS +G+VNF + +DA +A+E
Sbjct: 62 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 147
LN + + V S R+ L+ GL N++IKNL +ID++
Sbjct: 122 LNFTVVNGKPIRV----MFSNRDPTLRK-------------SGLANVFIKNLEPNIDNKS 164
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L E+FS FGTI S KV D +G SKG GF+ F + A A+ +NG + + ++V +
Sbjct: 165 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 224
Query: 208 QRKEER 213
R++ER
Sbjct: 225 IRRQER 230
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 208/451 (46%), Positives = 275/451 (60%), Gaps = 28/451 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N +++FVG F+R+QERE F NV+VKNL + +D DL F +G ITSA+V
Sbjct: 236 MLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIV 295
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +G S+CFGFVNFE ++ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 296 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 355
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ +K Q +NLY+KNL D I+DE L++LF FG + SCKVM D G SKG GFV+F+
Sbjct: 356 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 415
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPM 239
T E+A+ A+ +MNGKM+ KPLYVAVAQRKEER+A L A F+++R +A M P++
Sbjct: 416 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTL------ 469
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
GP+ QF +G PA+ PP G+ Q P +PN +P Q Q GQ
Sbjct: 470 ---GPNIAPHQFNFGHGVPALFPPPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQ 518
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 356
R G G P PHQM + +R+ P RN P + P+
Sbjct: 519 RSGPPHGGMPRHLHN------PHQMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPM 572
Query: 357 DMGAGIPRRDASVGQ-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+ VG+ P L T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTG
Sbjct: 573 QPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTG 632
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
MLLE+D+TEVL+L+ESP+ L+ KVAEAM+VL
Sbjct: 633 MLLELDKTEVLNLVESPDTLRDKVAEAMKVL 663
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ NVF+KNL+ + ++ L ++F +GTI S+ V D +GKSK +GF+ FE+
Sbjct: 163 RDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFES 222
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
A A+ LNG + ++ +VG ++ ERE T D N+Y+KN
Sbjct: 223 ESSAKDAINGLNGMLANGQKIFVGLFIRRQEREH------------TGDANNFTNVYVKN 270
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D L FS FG ITS VMRD +G+S+ GFV F E A A+ +NGK I
Sbjct: 271 LPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIG 330
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
LYVA AQ+K ER+A L+A+F
Sbjct: 331 DMVLYVARAQKKSERQAELKAKFEH 355
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEA 88
++V +L+ S ++ L +F + + SA V RD G KS +G+VNF + +DA +A+E
Sbjct: 86 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 145
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 147
LN + + V S R+ L+ GL N++IKNL +ID++
Sbjct: 146 LNFTVVNGKPIRV----MFSNRDPTLRK-------------SGLANVFIKNLEPNIDNKS 188
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L E+FS FGTI S KV D +G SKG GF+ F + A A+ +NG + + ++V +
Sbjct: 189 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 248
Query: 208 QRKEER 213
R++ER
Sbjct: 249 IRRQER 254
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 208/451 (46%), Positives = 275/451 (60%), Gaps = 28/451 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N +++FVG F+R+QERE F NV+VKNL + +D DL F +G ITSA+V
Sbjct: 213 MLANGQKIFVGLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIV 272
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +G S+CFGFVNFE ++ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 273 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 332
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ +K Q +NLY+KNL D I+DE L++LF FG + SCKVM D G SKG GFV+F+
Sbjct: 333 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 392
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPM 239
T E+A+ A+ +MNGKM+ KPLYVAVAQRKEER+A L A F+++R +A M P++
Sbjct: 393 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTL------ 446
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
GP+ QF +G PA+ PP G+ Q P +PN +P Q Q GQ
Sbjct: 447 ---GPNIAPHQFNFGHGVPALFPPPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQ 495
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 356
R G G P PHQM + +R+ P RN P + P+
Sbjct: 496 RSGPPHGGMPRHLHN------PHQMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPM 549
Query: 357 DMGAGIPRRDASVGQ-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+ VG+ P L T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTG
Sbjct: 550 QPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTG 609
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
MLLE+D+TEVL+L+ESP+ L+ KVAEAM+VL
Sbjct: 610 MLLELDKTEVLNLVESPDTLRDKVAEAMKVL 640
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ K+ NVF+KNL+ + ++ L ++F +GTI S+ V D +GKSK +GF+ FE+
Sbjct: 140 RDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFES 199
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
A A+ LNG + ++ +VG ++ ERE T D N+Y+KN
Sbjct: 200 ESSAKDAINGLNGMLANGQKIFVGLFIRRQEREH------------TGDANNFTNVYVKN 247
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D L FS FG ITS VMRD +G+S+ GFV F E A A+ +NGK I
Sbjct: 248 LPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIG 307
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
LYVA AQ+K ER+A L+A+F
Sbjct: 308 DMVLYVARAQKKSERQAELKAKFEH 332
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEA 88
++V +L+ S ++ L +F + + SA V RD G KS +G+VNF + +DA +A+E
Sbjct: 63 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAMEN 122
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 147
LN + + V S R+ L+ GL N++IKNL +ID++
Sbjct: 123 LNFTVVNGKPIRV----MFSNRDPTLRK-------------SGLANVFIKNLEPNIDNKS 165
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L E+FS FGTI S KV D +G SKG GF+ F + A A+ +NG + + ++V +
Sbjct: 166 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 225
Query: 208 QRKEER 213
R++ER
Sbjct: 226 IRRQER 231
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 208/450 (46%), Positives = 268/450 (59%), Gaps = 51/450 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N++++FVG +R+++RE KF NV++KNL +++DL++ F +G ITSAVV
Sbjct: 186 MLANNRKMFVGLHMRRRDREV-----KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVV 240
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DG SKCFGFVNF+ + A +AVE NGK D+ YVG+AQKK ER+ ELK +F +
Sbjct: 241 MRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGR 300
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
VDK G+NLY+KN+ D I+DE LK+LF EFG + SCKVM D G SKGSGFV+F+
Sbjct: 301 GRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFA 360
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T E RA+ MNG+++ KPLYV +AQ KEER+A L A F+Q R +AM S Y
Sbjct: 361 TAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQ-RNLAMAAS------QY 413
Query: 241 PPGPSGLGQQFLYGQ--APPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
GP QQ +G +P I PPQ A FG+ Q VPGM P PV+
Sbjct: 414 -AGP----QQVYFGHPSSPGPIAPPQGAVFGFPQHFVPGMGP--------ISPVMMPPHN 460
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 357
QRP G P +Q Q + + MP N + P+ P
Sbjct: 461 MQRP-RYPGPAPYRQQQAMIHANANHMP------------NARPGPYPAMPPQAFP---- 503
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
GAG A+ Q ++ +TA+A+A P Q +LG LY LVEQLERD A KVTGML
Sbjct: 504 -GAG-----ATAWQQHAVSRTTTAVASAGPADQHQILGNKLYALVEQLERDHAGKVTGML 557
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
LEMD+ E+L LL SPEAL+AKV EAM VL+
Sbjct: 558 LEMDKAEILQLLRSPEALRAKVREAMAVLQ 587
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 21/201 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L E+ + L +F + + + V RD G S +G+VNF + +A +A+EA
Sbjct: 36 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 95
Query: 89 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LN +GK + S R+ L+ K NL++KNL +ID +
Sbjct: 96 LNFTPL------IGKYIRVMFSNRDPSLR------------KSGRANLFVKNLEPNIDSK 137
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L E+FS FG I SCKV D +G SKG GFV + T E A A+ +NG + ++ ++V +
Sbjct: 138 NLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGL 197
Query: 207 AQRKEERRARLQAQFSQMRPV 227
R+ +R + + + P
Sbjct: 198 HMRRRDREVKFTNVYIKNLPT 218
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 219/485 (45%), Positives = 283/485 (58%), Gaps = 80/485 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI +VFVGHF ++Q+R + N +VKN+ TD DL K F +G + SAVV
Sbjct: 143 MLIAGTEVFVGHFQKRQDRPDA---DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 199
Query: 61 MRDGDG--KSKCFGFVNFENADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQE 113
M+D ++ FGFVN+E +D A KAV+ALNGK + D E YVGKAQK+SERE+E
Sbjct: 200 MKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERE 259
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L+ +FEQ E ++K+QG+NLY+KNL D + D++L+E F+E GTITS +VMRDP+G S+G
Sbjct: 260 LRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRG 319
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
GFV FSTPEEA++A+AEMNGK+I KP+YVA+AQRKE RRA+L+AQ +Q R G V
Sbjct: 320 FGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQR---AGMVV 376
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAP-----PAIIPPQA--GFGYQQQLVP----------G 276
MPM GQ +YG AP P +PPQA GF Y QQ++P G
Sbjct: 377 GRGMPM--------GQPPMYGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQRGPMPYG 428
Query: 277 MRPAGAPMPNFF-VPVV-----------SQGQQGQRPGGR-RGAGPVQQTQQPLPIMPHQ 323
R GAP P + +P + + G RP G R P T + P
Sbjct: 429 ARVPGAPAPGGYPMPWLRHAHAAAAWPAASWPSGPRPAGSLRALRPTAATSSTR-LTPAT 487
Query: 324 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
P R D P G M P AG P P+T S ALA
Sbjct: 488 TPAR-------------DVP---PQGVMPPAAPVQNAG----------PEPLT--SAALA 519
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
ASPE Q+ ++GE LYPL+ + + + A K+TGMLLEMD E+LHLLESPEAL+AK+ EAM
Sbjct: 520 AASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAM 579
Query: 444 EVLRS 448
VL +
Sbjct: 580 TVLEA 584
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNF 76
+R+ K+ N+FVKNLD S ++ L F +G I S V + G SK +G+V++
Sbjct: 68 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHY 127
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
E A+ A +A+ +NG E +VG QK+ +R D N Y+
Sbjct: 128 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRP---------------DADDWTNCYV 172
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNG 194
KN+ D L + F FG + S VM+D + ++G GFV + + A +A+ +NG
Sbjct: 173 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNG 232
Query: 195 KMI-----VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + +YV AQ++ ER L+ +F Q++
Sbjct: 233 KSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLK 268
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 53 GTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 111
G + S V RD +S + +VNF N DA +A++ +N + +Q+
Sbjct: 15 GPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSLR 74
Query: 112 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV-MRDPSGI 170
+ G N+++KNL SID++ L + FS FG I SCKV + +G
Sbjct: 75 KSGVG----------------NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGN 118
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
SKG G+V + T E A+ A+A++NG +I ++V Q++++R
Sbjct: 119 SKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR 161
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 163/227 (71%), Positives = 188/227 (82%), Gaps = 2/227 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK VFVG F+RKQER+ KTKFNNVFVKNL ESTT EDL KIFGEYG ITSAVV
Sbjct: 185 MLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVV 244
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKS+CFGF+NFEN D A+ AV+ LNGKK +D+EWYVG+AQKKSERE ELK +FEQ
Sbjct: 245 MIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQ 304
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++K+ DK+QGLNLY+KNL DSI D++L ELFS FG ITS KVMRD +G+SKGSGFVAFS
Sbjct: 305 SLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFS 364
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
T EEAS+AL EMNGKMI KPLYVA AQRKE+R+A LQ + ++PV
Sbjct: 365 TREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQV--TVLKPV 409
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD++ ++ L + F +GTI S V D G+SK FGFV ++ + A A+++L
Sbjct: 123 NIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSL 182
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D+ +VG +K ER+ + DK + N+++KNL +S E L
Sbjct: 183 NGMLINDKPVFVGPFVRKQERDH------------SFDKTKFNNVFVKNLSESTTKEDLL 230
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++F E+G ITS VM G S+ GF+ F P+ AS A+ E+NGK I K YV AQ+
Sbjct: 231 KIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQK 290
Query: 210 KEERRARLQAQFSQ 223
K ER L+ +F Q
Sbjct: 291 KSEREMELKRRFEQ 304
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 19/186 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L+ + +D L ++F + G + S V RD + S + +VN+ N DAA+A+E
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN +++ V + + S R N++IKNL +ID++
Sbjct: 95 LNFAALNNKPIRVMYSNRDPSSRRS-----------------GSANIFIKNLDKTIDNKT 137
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L E FS FGTI SCKV D +G SKG GFV + E A A+ +NG +I KP++V
Sbjct: 138 LHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPF 197
Query: 208 QRKEER 213
RK+ER
Sbjct: 198 VRKQER 203
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L ++ D +L ELFS+ G + S +V RD S S G +V +S P +A+RAL
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + +KP+ V + R R
Sbjct: 95 LNFAALNNKPIRVMYSNRDPSSR 117
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 217/478 (45%), Positives = 281/478 (58%), Gaps = 67/478 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI +VFVG F ++Q+R + N +VKN+ TD DL K F +G + SAVV
Sbjct: 197 MLIAGTEVFVGQFQKRQDRPDA---DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 253
Query: 61 MRDGDG--KSKCFGFVNFENADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQE 113
M+D ++ FGFVN+E +D A KAV+ALNGK + D E YVGKAQK+SERE+E
Sbjct: 254 MKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERE 313
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L+ +FEQ E ++K+QG+NLY+KNL D + D++L+E F+E GTITS +VMRDP+G S+G
Sbjct: 314 LRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRG 373
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
GFV FSTPEEA++A+AEMNGK+I KP+YVA+AQRKE RRA+L+AQ +Q R G V
Sbjct: 374 FGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQR---AGMVV 430
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAP-----PAIIPPQA--GFGYQQQLVP----------G 276
MPM GQ +YG AP P +PPQA GF Y QQ++P G
Sbjct: 431 GRGMPM--------GQPPMYGAAPMFYGQPGQLPPQARQGFMYPQQMMPRGVQRGPMPYG 482
Query: 277 MR------PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA 330
R P G PMP + +P+ Q Q +R G Q + R H
Sbjct: 483 ARVPGAPAPGGYPMPGYGMPMQQQRGQPRRGRQGPGPQGPQGAPANRRNFKYTANARNHP 542
Query: 331 YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
R D P G M P AG P P+T S ALA ASPE Q
Sbjct: 543 AR--------DVP---PQGVMPPAAPVQNAG----------PEPLT--SAALAAASPEIQ 579
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ ++GE LYPL+ + + + A K+TGMLLEMD E+LHLLESPEAL+AK+ EAM VL +
Sbjct: 580 KNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVLEA 637
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNF 76
+R+ K+ N+FVKNLD S ++ L F +G I S V + G SK +G+V++
Sbjct: 122 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHY 181
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
E A+ A +A+ +NG E +VG+ QK+ +R D N Y+
Sbjct: 182 ETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDRP---------------DADDWTNCYV 226
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNG 194
KN+ D L + F FG + S VM+D + ++G GFV + + A +A+ +NG
Sbjct: 227 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNG 286
Query: 195 KMI-----VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + +YV AQ++ ER L+ +F Q++
Sbjct: 287 KSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLK 322
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V ++ T+ L +IF G + S V RD +S + +VNF N DA +A++
Sbjct: 46 SLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDT 105
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + +Q+ + G N+++KNL SID++ L
Sbjct: 106 MNFTSIKGVPCRIMWSQRDPSLRKSGVG----------------NIFVKNLDTSIDNKAL 149
Query: 149 KELFSEFGTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I SCKV + +G SKG G+V + T E A+ A+A++NG +I ++V
Sbjct: 150 YDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQF 209
Query: 208 QRKEER 213
Q++++R
Sbjct: 210 QKRQDR 215
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ ++ + + L E+F+ G + S +V RD + S G +V F +A R
Sbjct: 42 FHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAER 101
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL MN I P + +QR R
Sbjct: 102 ALDTMNFTSIKGVPCRIMWSQRDPSLR 128
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 201/498 (40%), Positives = 286/498 (57%), Gaps = 58/498 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG+ + ++ER++ +K +F N+++KNLD S T ++ +++F +YG +TSA
Sbjct: 195 MLLNDKKVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSA 254
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+V D +G SK FGFVN+E+ ++A AV+AL+ ++ +V +AQKK+ERE+EL+ +
Sbjct: 255 IVQVDEEGNSKGFGFVNYEHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSY 314
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D +DDEKL+ F FGTITSCKVMRD SKG GFV
Sbjct: 315 EQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKSTSKGFGFVC 374
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KMI SKPLYV++AQR+E RR +L++Q +Q + M + +P
Sbjct: 375 FSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGIP 434
Query: 239 --------MYPPGPSGL---GQQFL-YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPN 286
YPPGP G+ + YGQ P ++PP+ + VPG G P+P
Sbjct: 435 GGYINGPMYYPPGPGSFPPQGRNMMGYGQ--PGMLPPRPRYPAGNGQVPG----GMPIPP 488
Query: 287 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDM 346
+ P S G P G PV + P P+ PR +A P N
Sbjct: 489 YGQPPQSYGGMPGYPRGGAPRPPVARGPGSSPTNPNAPIPRANA---PPSVNGAAARGGA 545
Query: 347 GAGSMLPV---------------------PVDMGAGIPRRDASVGQPMPITALST----- 380
GS+ P P AG P VGQ P A +T
Sbjct: 546 PQGSVPPNRPPPAGAPAPGNRPPQGYKLNPQTRNAGAP----PVGQTSPAQAPATQSEVP 601
Query: 381 -----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
ALANASP +Q+ +LGE +Y + + + A K+TGMLLEMD E+LHLLESP+++
Sbjct: 602 TLTAGALANASPMEQKQMLGEVIYMKIAPAQPELAGKITGMLLEMDNAELLHLLESPDSM 661
Query: 436 KAKVAEAMEVLRSVAQQQ 453
KV EA+ VL + +
Sbjct: 662 AGKVNEALAVLHDFTKDE 679
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G+SK +GFV++E
Sbjct: 121 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYE 180
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
+ A A++A+NG +D++ YVG + ER+ E+K QF NL
Sbjct: 181 TGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQF-------------TNL 227
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL S+ ++ +E+F ++G +TS V D G SKG GFV + EEA A+ ++
Sbjct: 228 YIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALHD 287
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I K L+V+ AQ+K ER L+ + Q +
Sbjct: 288 TDIRGKKLFVSRAQKKAEREEELRRSYEQAK 318
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 20/198 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V LD + T+ L +IF G + S V RD +S + +VN+ N D +A+E L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 106 NYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKALH 149
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 150 DTFAAFGNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHIS 209
Query: 210 KEERRARL---QAQFSQM 224
++ER+++L +AQF+ +
Sbjct: 210 RKERQSKLDEMKAQFTNL 227
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 205/473 (43%), Positives = 282/473 (59%), Gaps = 47/473 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL DSI+DE+L+ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
M+PPG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QMFPPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG------------QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD 341
G G + P + AG ++ T PI + + Y NM++
Sbjct: 447 TGNSGFATMQGPFRTTPRAPTAQ--AGTMRSTLSARPITAVGVSAQSRPSNYKYTSNMRN 504
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
P M + P PV I ++ P+TA + LA A P++Q+ +LGE L+PL
Sbjct: 505 PPQAMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPL 553
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 554 IQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 606
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 204/493 (41%), Positives = 294/493 (59%), Gaps = 59/493 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ +++RE + K K F NV++KN+DE+ D++L ++F +YG+ITS
Sbjct: 153 MLLNGKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSC 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ +A KAV L+GK+ + + +YVG+AQKK+ER+ ELK +
Sbjct: 213 KVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE L+ FS FGTITS KVM D G SKG GFV
Sbjct: 273 FEQYKIERMNRYQGINLYVKNLDDTIDDEHLRREFSVFGTITSAKVMMD-DGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ EMN +++ +KPLYVA+AQRKEER+A L AQ+ Q MR ++G
Sbjct: 332 CFSSPEEATKAVTEMNNRIVGTKPLYVALAQRKEERKAHLNAQYLQSNTNMRMQSIG--- 388
Query: 234 PPRMPMYPPGPSG--------LGQQFLYGQAPPAIIPPQAGFGYQQQL-VPGMRPAGAPM 284
P+Y PG S GQ+F YG A I PQ + Q Q+ + + A A
Sbjct: 389 ----PIYQPGASSGYFVPTIPQGQRF-YGPAQMTQIRPQPRWASQPQVRIATPQNAAAGH 443
Query: 285 PNFFVPVVSQGQQGQRPGGRR----GAGPVQQTQQPLPIMPHQMP--------------P 326
PN + G + P G++ G V + +P+ Q+P
Sbjct: 444 PNMATQYRNIGARAPVPAGQQAAFTGNSMVNRNSRPISTAQQQIPGAVSAGSVRVPSARS 503
Query: 327 RGHAYRYPLGRNMQDFPFD-MGAGSML----PVPVDMGAGIPRRDASVGQPMPITALSTA 381
G Y+Y NM++ P + G G P PV + ++ P+TA +
Sbjct: 504 SGSGYKYTA--NMRNPPGEAQGMGQAQPRQPPAPVQAALHVHGQE-------PLTA--SM 552
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA+A PE Q+ +LGE L+PL++++ K+TGMLLE+D +EVLH+LE E+LK KV E
Sbjct: 553 LASAKPEDQKQMLGERLFPLIQRIYPKFTGKITGMLLEIDNSEVLHMLEHQESLKIKVQE 612
Query: 442 AMEVLRSVAQQQA 454
A+ V+++ QQ
Sbjct: 613 AVAVIQAHQTQQT 625
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 126/202 (62%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD++ ++ + F +G I S V +D G+SK +GFV+F+ A +
Sbjct: 86 KSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQ 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ +VG+ + +RE+EL GQ + N+YIKN+ ++++
Sbjct: 146 SIEKVNGMLLNGKKVFVGRFVGRKDREKEL-GQKAKLF---------TNVYIKNIDENVN 195
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLY 203
D++L E+F ++G+ITSCKVM G S+G GFVAF P+EA +A++E++GK K Y
Sbjct: 196 DKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYY 255
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q +
Sbjct: 256 VGRAQKKAERQNELKRKFEQYK 277
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+N DA A++
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFEILNGCPMRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F + A++++ ++NG ++ K ++V
Sbjct: 107 YDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFV 166
Query: 209 RKEERRARL 217
+++R L
Sbjct: 167 GRKDREKEL 175
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 210/481 (43%), Positives = 284/481 (59%), Gaps = 52/481 (10%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
N KQ++V F+R++ER+ + +KF NV+ KNL + TD+DL ++F +GTITSAVVM+D
Sbjct: 187 NGKQLYVDLFIRREERQHIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKD 246
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 123
GDG+SKCFGFVN+E + A +AVE LNGK D YVG+A++K ER+ ELK +F++
Sbjct: 247 GDGESKCFGFVNYEKTEYAEEAVEKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERN 306
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
+ + K +G NLY+KNL SIDDE L+ LF F I +CKVM D G SKG GFV F+T E
Sbjct: 307 DKIRKSKGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIE 366
Query: 184 EASRALAEMNGKMIV-SKPLYVAVAQRKEERRARLQAQFSQMRPV-----AMGPSVPPRM 237
A++A++ N + +V +K LYV VAQRKEER A L AQF++ V AM ++ PR
Sbjct: 367 AANKAVSXRNERKLVGTKLLYVCVAQRKEERSAILAAQFARRHMVGARTPAMPQNIAPR- 425
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQ---LVPGMRPAGAP---MP-NFFV 289
P Y F YG P ++ PQA GFGYQQ ++PG+ P GAP MP +
Sbjct: 426 PFY----------FGYG-VPGVLVRPQATGFGYQQYPQPVIPGLNP-GAPSLMMPYHMLR 473
Query: 290 PVVSQGQQ--GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQ-DFPFDM 346
P+ Q QQ Q P Q + MP +A P M F
Sbjct: 474 PIHHQPQQQMAQLP----------NWNQIVRYMP-------NACNGPTNSAMAPQMDFVA 516
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 406
+ V D P S+ + I +L+TALA+A PE+Q +LGE L PLV QLE
Sbjct: 517 PVVPQISVLTDSVVTAP----SISEEPSIDSLATALASAEPEKQHLILGERLQPLVAQLE 572
Query: 407 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 466
+ A KVT MLLE+++ VL L+ES E L+ KV +AME LR ++ N+PA+ +SLSL
Sbjct: 573 PEHAGKVTEMLLELEKAVVLELIESAENLQEKVNQAMESLRPKKEEGTNDPAEP-SSLSL 631
Query: 467 N 467
+
Sbjct: 632 S 632
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 19/188 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+V+V NL+ S T++ L +F + + S + D G+S + +VNF + +DA A+E
Sbjct: 32 SVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEY 91
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + + T+ + NL+IKNL +I + L
Sbjct: 92 FNFTVVNGKSIRVMFSNRDP----------------TLRRSGAANLFIKNLEPNIVAKSL 135
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 206
++FS FG I SCKV D +G SKG GFV F + E A A+ +NGK+ K LYV +
Sbjct: 136 HQMFSRFGIILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDL 195
Query: 207 AQRKEERR 214
R+EER+
Sbjct: 196 FIRREERQ 203
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKI 48
+I+D ++VG RKQER+ +K KF+ N+++KNLD S DE L+ +
Sbjct: 276 IISDVALYVGRAKRKQERQA-ELKEKFDKERNDKIRKSKGCNLYLKNLDCSIDDEYLRNL 334
Query: 49 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKK 107
FG + I + VM D +G+SK FGFV F + A KAV N +K + YV AQ+K
Sbjct: 335 FGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVCVAQRK 394
Query: 108 SEREQELKGQF 118
ER L QF
Sbjct: 395 EERSAILAAQF 405
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALA 190
+++Y+ NL S+ +++L +LFS+ + S ++ D +G S G +V F + E+A AL
Sbjct: 31 VSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALE 90
Query: 191 EMNGKMIVSKPLYVAVAQR 209
N ++ K + V + R
Sbjct: 91 YFNFTVVNGKSIRVMFSNR 109
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 207/487 (42%), Positives = 288/487 (59%), Gaps = 45/487 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R V P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVIN 398
Query: 235 PRMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAG 281
P P P G P + Y + A + P + Q Q +PG +RPA
Sbjct: 399 PYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQLRPSPRWTAQGARPHPFQNMPGAIRPA- 457
Query: 282 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP----RGHAYRYPLG- 336
AP P F + Q + +R A QT P P G Y+Y G
Sbjct: 458 APRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTGPQYKYAAGV 517
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
RN Q +M V + GQ P+TA + LA+A P++Q+ +LGE
Sbjct: 518 RNPQQHLNTQPQVAMQQPAVHVQ----------GQE-PLTA--SMLASAPPQEQKQMLGE 564
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQ 451
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ
Sbjct: 565 RLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQ 624
Query: 452 QQANNPA 458
+ NNPA
Sbjct: 625 KAVNNPA 631
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 205/471 (43%), Positives = 282/471 (59%), Gaps = 43/471 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
++ PG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QIFQPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG--QRPGGRRGA--------GPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 343
G G G R A G ++ T PI + + Y NM++ P
Sbjct: 447 TGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITAVGVSAQSRPSNYKYTSNMRNPP 506
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 403
M + P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 507 QAMAIPT--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQ 555
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+ K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 556 CMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 606
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 197/459 (42%), Positives = 278/459 (60%), Gaps = 34/459 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP---------LGRNMQDFPFDMGAG 349
RP G +G + P P + H + P G P P+ +
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGVPTAVPNLAPRAAVAAAAPRAVAPYKYASS 499
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + +
Sbjct: 500 VRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNL 557
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 596
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 212/472 (44%), Positives = 281/472 (59%), Gaps = 49/472 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M + K+VFV F+++ +R +TKF NVFVKNLD +E++K+ F +G IT+ V+
Sbjct: 188 MQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGVITNVVI 247
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D + KSK FGFVNF++ + A AVE +N + R YVG+AQKK+EREQ L+ QFE+
Sbjct: 248 MKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEE 307
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
E K+QG NLY+KNL DSIDDE LK+ FS +G ITS KVMRD GISKG GFV F+
Sbjct: 308 KRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFT 367
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEASRA E NG MI KP+YVA+AQRKE R+A+LQ Q++Q M P Y
Sbjct: 368 SPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQRMSGLMPPPGAQVAAAY 427
Query: 241 PPGPSGLGQQFLYGQAPPAIIP--PQ-AGFGYQQQLVPGM---------RPAGAPMPNF- 287
PP +Y APPA++P PQ G YQ + PG RP+ P+P +
Sbjct: 428 PP---------VYYAAPPALLPQVPQRQGLMYQPVMRPGWRTGPLAPPGRPSLQPLPPYA 478
Query: 288 FVPVVSQGQQGQR---PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 344
VP + Q+ R PGG+ P+ Q Q P + P G+ GRN Q P
Sbjct: 479 LVPNAQRQQRQVRNRPPGGQ----PLAQIPQLQIPQPQAIQPGGYKEN---GRNQQQRPR 531
Query: 345 DMGAGSMLPVPVDMGAGIPRRDASVGQP-------MPI--TALSTALANASPEQQRTLLG 395
+M V G PR A+ G P MP+ + + ++ ASP+QQ+ LLG
Sbjct: 532 Q----AMKYV----NNGRPRDGAAAGGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLLG 583
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
E L+PLV + D A K+TGMLLEMD +E+L LLE+PEAL +KV EA++VL+
Sbjct: 584 ERLFPLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALASKVDEAVQVLQ 635
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 13/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLDES ++ L F +G I S + DG+SK +GFV+FE
Sbjct: 115 HRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ-DGRSKGYGFVHFE 173
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NG + ++ +V K K+S+R A ET KF N+++K
Sbjct: 174 TDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDR--------LAATGET--KFT--NVFVK 221
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + +E++KE FS FG IT+ +M+D + SKG GFV F PE A A+ MN +
Sbjct: 222 NLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQL 281
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
S+ +YV AQ+K ER L+ QF + R
Sbjct: 282 GSRTIYVGRAQKKAEREQILRRQFEEKR 309
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 18/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LDE+ + L IF + G +TS V RD +S +G+VN+ + DA +A+EA
Sbjct: 39 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 98
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + + G N++IKNL +SID++ L
Sbjct: 99 LNYTPINGKTIRIMWSHRDPSTRKSGVG----------------NIFIKNLDESIDNKAL 142
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCK+ G SKG GFV F T E A+ A+ ++NG +V K ++VA
Sbjct: 143 HDTFIAFGPILSCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFV 201
Query: 209 RKEERRA 215
++ +R A
Sbjct: 202 KRSDRLA 208
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 189
G++LY+ +L +++ + +L +FS+ G +TS +V RD + S G G+V +S+ +A RA+
Sbjct: 37 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAM 96
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERR 214
+N I K + + + R R
Sbjct: 97 EALNYTPINGKTIRIMWSHRDPSTR 121
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 201/490 (41%), Positives = 294/490 (60%), Gaps = 53/490 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ +++RE + K K + NV++KN+DE+ D++L ++F +YG+ITS
Sbjct: 153 MLLNGKKVFVGRFVGRKDREKELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSF 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ ++A KAV L+GK+ + + +YVG+AQKK+ER+QELK +
Sbjct: 213 KVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L++ FS FGTITS KVM D G SKG GFV
Sbjct: 273 FEQYKIERMNRYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMD-DGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ +MNG+++ +KPLYVA+AQRKE+R+A L +Q+ Q MR ++G
Sbjct: 332 CFSSPEEATKAVTDMNGRIVGTKPLYVALAQRKEDRKAHLDSQYLQRNTNMRMQSIG--- 388
Query: 234 PPRMPMYPPGPSG------LGQ-QFLYGQAPPAIIPPQAGFGYQQQLVPGM-RPAGAPMP 285
P+Y PG S + Q Q YG I PQ + Q Q+ G + A A P
Sbjct: 389 ----PIYQPGASSGYFVPTIPQPQRFYGPTQMTQIRPQPRWASQPQVRAGTPQAAAAGYP 444
Query: 286 NFFVPVVSQGQQGQRPGGRRGA----GPVQQTQQPLPIMPHQMP------------PRGH 329
N + G + P G++ A V + +P+ QMP RG
Sbjct: 445 NMATQYRNIGARAPVPAGQQAALARNAMVDRNARPISTAQQQMPGAVAAGGVRVPGARGT 504
Query: 330 AYRYPLGRNMQDFPFD-MGAGSML----PVPVDMGAGIPRRDASVGQPMPITALSTALAN 384
Y NM++ P G G P PV + ++ P+TA T LA
Sbjct: 505 GSGYKYTANMRNPPGQAQGMGQAQPGQPPAPVQAAVHVHGQE-------PLTA--TMLAT 555
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
A PE Q+ +LGE L+PL++++ + K+TGMLLE+D +++LH+LE E+LK KV E +
Sbjct: 556 AKPEDQKQMLGERLFPLIQRMYPELTGKITGMLLEIDNSDLLHMLEHHESLKNKVEEVVA 615
Query: 445 VLRSVAQQQA 454
VL++ QQ
Sbjct: 616 VLQAHQAQQT 625
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD S ++ + F +G I S V +D G+SK +GFV+FE A +
Sbjct: 86 KSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQ 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ +VG+ + +RE+EL GQ + N+YIKN+ ++++
Sbjct: 146 SIEKVNGMLLNGKKVFVGRFVGRKDREKEL-GQKAKLY---------TNVYIKNIDENVN 195
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLY 203
D++L E+F ++G+ITS KVM G S+G GFVAF PEEA +A+ E++GK K Y
Sbjct: 196 DKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYY 255
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q +
Sbjct: 256 VGRAQKKAERQQELKRKFEQYK 277
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+N DA +A++
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ +
Sbjct: 63 MNFDILKGRPMRIMWSQRDPSLRKSGVG----------------NVFIKNLDRSIDNKAM 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F + A++++ ++NG ++ K ++V
Sbjct: 107 YDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFV 166
Query: 209 RKEERRARL 217
+++R L
Sbjct: 167 GRKDREKEL 175
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 197/482 (40%), Positives = 281/482 (58%), Gaps = 35/482 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R V P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVIN 398
Query: 235 PRMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQQ------QLVPGMRPAGA 282
P P P G P + Y + + P + Q Q +PG A
Sbjct: 399 PYQPAPPSGYFMAAIPQTQNRAAYYPTSQITQLRPSPRWAAQGARPHPFQNMPGAIRPTA 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVTRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVSQY 511
Query: 343 PFDMGAGS-MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
+ G + + + + V P+TA + LA+A P++Q+ +LGE L+PL
Sbjct: 512 KYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPL 569
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANN 456
++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ NN
Sbjct: 570 IQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNN 629
Query: 457 PA 458
PA
Sbjct: 630 PA 631
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 199/494 (40%), Positives = 279/494 (56%), Gaps = 60/494 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNP 399
Query: 239 MYPPGPSGL---------GQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGA 282
P PSG + Y A + P + Q Q + MRP+ A
Sbjct: 400 YQPAPPSGYFMAAIPQAQNRAAYYSANQLAQLRPSPRWATQGVRPQHFQNIQNAMRPS-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG------ 336
P P F + A TQ P + +MP + + R
Sbjct: 459 PRPQTFNAI--------------RASTATNTQVPRMMASQRMPTQALSQRPAAASATTAP 504
Query: 337 -RNMQDFPFDMGA-------GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
R M + + G S VP +P+ V P+TA + LA A P+
Sbjct: 505 VRAMPQYKYAPGVRNPQQHMASQQQVP------MPQPAVHVQGQEPLTA--SMLAAAPPQ 556
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 557 EQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 616
Query: 449 V----AQQQANNPA 458
A Q++ PA
Sbjct: 617 HQAKEAAQKSTTPA 630
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + + N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKELF +G S +VM D +G SKG GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGRQVYVGRAQKKGERQNELKRKFEQMK 284
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +PL + +QR
Sbjct: 72 MNFDVIKGRPLRIMWSQR 89
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 203/476 (42%), Positives = 276/476 (57%), Gaps = 53/476 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++FG+YG S
Sbjct: 148 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSV 207
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE ++A KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 208 KVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRF 267
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 268 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 326
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----------------S 222
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ +
Sbjct: 327 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANAILN 386
Query: 223 QMRPVAMG---PSVP---PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 276
Q +P A G P+VP R P Y P Q P Q G Q +P
Sbjct: 387 QFQPAAGGYFMPAVPQAQSRPPYYAPNQ--------MTQIRPNPRWQQGGRPQGFQGMPN 438
Query: 277 MRPAGAPMPNFFVPVVSQGQQGQR--PGG--RRGAGPVQQTQQPLPIMPHQMPPRGHAYR 332
MR +G P PN + Q R PG R G P P P Q+P Y+
Sbjct: 439 MRQSG-PRPNLRHLAPAGNAQASRGLPGAPQRVGIPPTGPNLAPRPPAAAQVPRAVPPYK 497
Query: 333 YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
Y + P P P+ V P+TA + LA A P++Q+
Sbjct: 498 Y-------------ASSVRSPHPAVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQ 542
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 543 MLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 598
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 75 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 133
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 134 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 183
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELF ++G S KVM DP+G SKG GFV+F EEA++A+ EMNGK I
Sbjct: 184 NFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDI 243
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 244 NGKMVFVGRAQKKVERQAELKRRFEQLK 271
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 55 ITSAVVMRDGDGKSKCF-GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
+ S V RD + F +VNF+ DA +A++ +N + + +Q+ +
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 83
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
G N++IKNL SID++ L + FS FG I SCKV+ D +G SKG
Sbjct: 84 GVG----------------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKG 126
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
FV F T + A RA+ +MNG ++ + ++V + ++ER A L A+
Sbjct: 127 YAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 173
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 198/466 (42%), Positives = 278/466 (59%), Gaps = 48/466 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 178 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 237
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 238 KVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 297
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL+ FS FG+ITS KVM + G SKG GFV
Sbjct: 298 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVC 356
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 357 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 410
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ--- 294
S + QF P AG GY VP + P P ++ P ++Q
Sbjct: 411 -----ASAILNQF----------QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRP 450
Query: 295 ---GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP---------LGRNMQDF 342
QQG RP G +G + P P + H + P G P
Sbjct: 451 NPRWQQGGRPQGFQGMPSALRQSGPRPALRH-LAPTGVPTAVPNLAPRAAVAAAAPRAVA 509
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 510 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 567
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 568 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 613
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 105 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 163
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 164 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 213
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD LKELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 214 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 273
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 274 SGKAIFVGRAQKKVERQAELKRKFEQLK 301
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 89 MNFDVMKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 132
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 133 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 191
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 192 SRKEREAELGAK 203
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 196/459 (42%), Positives = 276/459 (60%), Gaps = 34/459 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRG---------HAYRYPLGRNMQDFPFDMGAG 349
RP G +G + P P + H + P G P+ +
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGVPTAVQNLAPRAAVAAAAPRAVAPYKYASS 499
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + +
Sbjct: 500 VRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNL 557
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 AGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 596
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 197/465 (42%), Positives = 278/465 (59%), Gaps = 46/465 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + D LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-- 236
FS+P+EA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVS 293
+ + P P G F+ PA+ PQA Y + MRP
Sbjct: 398 INQFQPTPGGY---FM-----PAV--PQAQNRPPYYAPNQIAQMRPN------------P 435
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPR----------GHAYRYPLGRNMQDFP 343
+ QQG RP G +G + P P + H P R + P R + P
Sbjct: 436 RWQQGGRPQGFQGVPNTIRQSGPRPALRHLTPARVPTAVQNLSPRPSVATPAPRAVP--P 493
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 403
+ A P P P+ V P+TA + LA A P++Q+ +LGE L+PL++
Sbjct: 494 YKYAANVRSPHPAIQPLQTPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQ 551
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 552 TMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 596
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD +LKELFS++G S KVM DPSG SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 198/466 (42%), Positives = 278/466 (59%), Gaps = 48/466 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL+ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 393
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ--- 294
S + QF P AG GY VP + P P ++ P ++Q
Sbjct: 394 -----ASAILNQF----------QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRP 433
Query: 295 ---GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP---------LGRNMQDF 342
QQG RP G +G + P P + H + P G P
Sbjct: 434 NPRWQQGGRPQGFQGMPSALRQSGPRPALRH-LAPTGVPTAVPNLAPRAAVAAAAPRAVA 492
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 493 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 550
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 551 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 596
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD LKELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKAIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVMK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 207 AQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 173 FKSRKEREAELGAK 186
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 198/489 (40%), Positives = 280/489 (57%), Gaps = 48/489 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
P PSG Y A +A + + QL RP+ P + +QG +
Sbjct: 400 YQPAPPSG------YFMAAIPQTQNRAAYYHTNQLAQLARPS----PRW----TAQGARP 445
Query: 299 Q----RPGGRRGAGP----------------VQQTQQPLPIMPHQMPPRGHAYRYPLGRN 338
PG R A P V TQ+ M PR A
Sbjct: 446 HPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPA 505
Query: 339 MQDFP-FDMGAGSMLP---VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
++ P + AG P + + + V P+TA + LA+A P++Q+ +L
Sbjct: 506 VRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQML 563
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSV 449
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL +
Sbjct: 564 GERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 623
Query: 450 AQQQANNPA 458
AQ+ NNP
Sbjct: 624 AQKAVNNPT 632
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ++ ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKRVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 199/479 (41%), Positives = 281/479 (58%), Gaps = 58/479 (12%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-- 236
FS+P+EA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVS 293
+ + P P G F+ PA+ PQA Y + MRP
Sbjct: 398 INQFQPTPGGY---FM-----PAV--PQAQNRPPYYAPNQIAQMRPN------------P 435
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG---HAYRYPLGRNMQDF-- 342
+ QQG RP G +G + P P + H P RG R + +Q+
Sbjct: 436 RWQQGGRPQGFQGVPNAIRQSGPRPTLRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSP 495
Query: 343 -------------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
P+ A P P P+ V P+TA + LA A P++
Sbjct: 496 RPSVATPAPRAVPPYKYAANVRSPHPAIQPLQTPQPAVHVQGQEPLTA--SMLAAAPPQE 553
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 554 QKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELFS++G S KVM D SG SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 206/482 (42%), Positives = 283/482 (58%), Gaps = 56/482 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
++ PG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QIFQPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG----------------QRPGGRR-----GAGPVQQTQQPLPIMPHQMPPRGHAYR 332
G G +PG R G +Q P + R Y+
Sbjct: 447 TGSSGFATMQGPFRAAPRAPTAQPGAMRSQQTVGGANMQSRSMAGPAVGVSAQSRPSNYK 506
Query: 333 YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
Y NM++ P M + P PV I ++ P+TA + LA A P++Q+
Sbjct: 507 YT--SNMRNPPQAMAIPT--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQ 553
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
+LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +
Sbjct: 554 MLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAK 613
Query: 453 QA 454
QA
Sbjct: 614 QA 615
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 199/478 (41%), Positives = 283/478 (59%), Gaps = 56/478 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML------ 352
RP G +G + P P + H + P G+A P R + +G + +
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNA---PASRGLPTTTQRVGVPTAVPNLAPR 496
Query: 353 ----------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
P P P+ V P+TA + LA A P++Q
Sbjct: 497 AAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQ 554
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 555 KQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 283/475 (59%), Gaps = 50/475 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----------YRYPLGRNMQDF------ 342
RP G +G + P P + H + P G+A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAV 499
Query: 343 ---------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
P+ + P P P+ V P+TA + LA A P++Q+ +
Sbjct: 500 AAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQM 557
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKVL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 281/474 (59%), Gaps = 48/474 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG---HAYRYPLGRNMQDF------- 342
RP G +G + P P + H P RG A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVA 500
Query: 343 --------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
P+ + P P P+ V P+TA + LA A P++Q+ +L
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQML 558
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 559 GERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 282/474 (59%), Gaps = 48/474 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQIRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG---HAYRYPLGRNMQDF------- 342
RP G +G + P P + H P RG A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVA 500
Query: 343 --------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
P+ + P P P+ V P+TA + LA A P++Q+ +L
Sbjct: 501 AAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQML 558
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 559 GERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/483 (41%), Positives = 284/483 (58%), Gaps = 43/483 (8%)
Query: 1 MLINDKQVFVGHFL------RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 54
ML+NDK+V+VGH + R+++ + +K +F N++VKNLD T +D K+F ++G
Sbjct: 195 MLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGN 254
Query: 55 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 114
+TSAV+ D G+S+ FGFVNFE ++A KAVE L+ ++ R+ +V +AQKK+ERE+EL
Sbjct: 255 VTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAEREEEL 314
Query: 115 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 174
+ +EQA E + K+QG+NLYIKNL D IDDE+L++ F FG+ITS KVMRD G SKG
Sbjct: 315 RKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKGTSKGF 374
Query: 175 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP 234
GFV FS+P+EA++A+AEMN KMI SKPLYV++AQR+E RR +L++Q +Q + M +
Sbjct: 375 GFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAA 434
Query: 235 PRMP-MYPPGP----------SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
+P Y GP G + + G P ++PP+ + Q+ PAG P
Sbjct: 435 AGIPGGYLNGPMYYPPGPGAYPPPGGRGMMGYGQPGMLPPRPRYAPNNQV-----PAGIP 489
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP----PRGHAYRYPLGRNM 339
+P + Q G R GP + P P+ P PRG+A P G
Sbjct: 490 IPAPYGQAPPQAYGGIPGYPRAPRGPPPAGRGGPPADPNSPPVNGAPRGNA---PQGAAA 546
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPR--------RDASVGQPMPITALSTALANASPEQQR 391
P AG P A P+ A G+ ITA ALANASP +Q+
Sbjct: 547 NRPP----AGGQPPAARAPTANRPQARQAPPAAVAAPTGEVPTITA--AALANASPMEQK 600
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE +Y + + + A K+TGMLLEMD TE+LHLLESP+A+ +KV EA+ VL +
Sbjct: 601 QMLGEVIYMKIAPSQPELAGKITGMLLEMDNTELLHLLESPDAMNSKVNEALAVLHEFTK 660
Query: 452 QQA 454
+++
Sbjct: 661 EES 663
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 114/208 (54%), Gaps = 6/208 (2%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G+SK +GFV++E
Sbjct: 121 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYE 180
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++A+NG +D++ YVG + +E + + E+ K Q N+Y+K
Sbjct: 181 TAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLEEM------KAQFTNIYVK 234
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + + +LF +FG +TS + D G S+G GFV F T EEA +A+ ++
Sbjct: 235 NLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEY 294
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V+ AQ+K ER L+ + Q +
Sbjct: 295 HGRKLFVSRAQKKAEREEELRKSYEQAK 322
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 24/212 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 45 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 104
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 105 LNYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 148
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV---- 204
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 208
Query: 205 ---AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A ++ ++ + ++AQF+ + + P V
Sbjct: 209 SRKASSRERQSKLEEMKAQFTNIYVKNLDPEV 240
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 283/475 (59%), Gaps = 50/475 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----------YRYPLGRNMQDF------ 342
RP G +G + P P + H + P G+A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAV 499
Query: 343 ---------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
P+ + P P P+ V P+TA + LA A P++Q+ +
Sbjct: 500 AAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQM 557
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 206/482 (42%), Positives = 282/482 (58%), Gaps = 56/482 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK +F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
++ PG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QIFQPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG----------------QRPGGRR-----GAGPVQQTQQPLPIMPHQMPPRGHAYR 332
G G +PG R G +Q P + R Y+
Sbjct: 447 TGSSGFATMQGPFRAAPRAPTAQPGAMRSQQTVGGANMQNRSMAGPAVGVTAQSRPSNYK 506
Query: 333 YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
Y NM++ P M + P PV I ++ P+TA + LA A P++Q+
Sbjct: 507 YT--SNMRNPPQAMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQ 553
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
+LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +
Sbjct: 554 MLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAK 613
Query: 453 QA 454
QA
Sbjct: 614 QA 615
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLK++F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 199/478 (41%), Positives = 281/478 (58%), Gaps = 56/478 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML------ 352
RP G +G + P P + H + P G+A P R + +G + +
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGVPTAVQTLAPR 496
Query: 353 ----------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
P P P+ V P+TA + LA A P++Q
Sbjct: 497 AAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQ 554
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 555 KQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 209/491 (42%), Positives = 284/491 (57%), Gaps = 65/491 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL DSI+DE+L+ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
M+PPG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QMFPPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG------------QRPGGRRGAGPVQQTQQPLPIMPHQ------MPPRGHA----- 330
G G + P + AG ++ T PI Q M R A
Sbjct: 447 TGNSGFATMQGPFRTTPRAPTAQ--AGTMRSTLSARPITGQQAVGGANMQSRSMAGPAVG 504
Query: 331 -------YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
Y NM++ P M + P PV I ++ P+TA + LA
Sbjct: 505 VSAQSRPSNYKYTSNMRNPPQAMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLA 553
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+
Sbjct: 554 AAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAV 613
Query: 444 EVLRSVAQQQA 454
VL++ +QA
Sbjct: 614 AVLQAHQAKQA 624
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 199/489 (40%), Positives = 279/489 (57%), Gaps = 48/489 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
P PSG Y A +A + QL RP+ P + +QG +
Sbjct: 400 YQPAPPSG------YFMAAIPQTQNRAAYYPTNQLAQLARPS----PRW----TAQGARP 445
Query: 299 Q----RPGGRRGAGP----------------VQQTQQPLPIMPHQMPPRGHAYRYPLGRN 338
PG R A P V TQ+ M PR A
Sbjct: 446 HPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPA 505
Query: 339 MQDFP-FDMGAGSMLP---VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
++ P + AG P + + + V P+TA + LA+A P++Q+ +L
Sbjct: 506 VRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQML 563
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSV 449
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL +
Sbjct: 564 GERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 623
Query: 450 AQQQANNPA 458
AQ+ NNP
Sbjct: 624 AQKAVNNPT 632
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 199/478 (41%), Positives = 281/478 (58%), Gaps = 56/478 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML------ 352
RP G +G + P P + H + P G+A P R + +G + +
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGVPTAVQSLAPR 496
Query: 353 ----------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
P P P+ V P+TA + LA A P++Q
Sbjct: 497 AAVAAAAPRAVAPYKYASSVRSPHPAMQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQ 554
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 555 KQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 282/475 (59%), Gaps = 50/475 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----------YRYPLGRNMQDF------ 342
RP G +G + P P + H + P G+A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAV 499
Query: 343 ---------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
P+ + P P P+ V P+TA + LA A P++Q+ +
Sbjct: 500 AAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQM 557
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 199/489 (40%), Positives = 279/489 (57%), Gaps = 48/489 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 176 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 235
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 236 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 295
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 296 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 354
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 355 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 414
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
P PSG Y A +A + QL RP+ P + +QG +
Sbjct: 415 YQPAPPSG------YFMAAIPQTQNRAAYYPTNQLAQLARPS----PRW----TAQGARP 460
Query: 299 Q----RPGGRRGAGP----------------VQQTQQPLPIMPHQMPPRGHAYRYPLGRN 338
PG R A P V TQ+ M PR A
Sbjct: 461 HPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPA 520
Query: 339 MQDFP-FDMGAGSMLP---VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
++ P + AG P + + + V P+TA + LA+A P++Q+ +L
Sbjct: 521 VRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQML 578
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSV 449
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL +
Sbjct: 579 GERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 638
Query: 450 AQQQANNPA 458
AQ+ NNP
Sbjct: 639 AQKAVNNPT 647
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 103 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 161
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 162 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 211
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 212 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 271
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 272 NGKQIYVGRAQKKVERQTELKRKFEQMK 299
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 198/477 (41%), Positives = 281/477 (58%), Gaps = 52/477 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----------YRYPLGRNMQDFP----- 343
RP G +G + P P + H + P G+A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAV 499
Query: 344 ------------FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
+ + P P P+ V P+TA + LA A P++Q+
Sbjct: 500 AAATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQK 557
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 QMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 614
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 282/475 (59%), Gaps = 50/475 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----------YRYPLGRNMQDF------ 342
RP G +G + P P + H + P G+A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAV 499
Query: 343 ---------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
P+ + P P P+ V P+TA + LA A P++Q+ +
Sbjct: 500 AAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQM 557
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 206/468 (44%), Positives = 271/468 (57%), Gaps = 69/468 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M + K+VFV F+++ +R +TKF NVFVKNLD +E++ + F +G IT+ V+
Sbjct: 187 MQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEEEINEHFSTFGVITNVVI 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D + KSK FGFVNF++ + A AVE +N + R YVG+AQKK+EREQ L+ QFE+
Sbjct: 247 MKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEE 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
E K+QG NLY+KNL DSIDDE LK+ FS +G ITS KVMRD GISKG GFV F+
Sbjct: 307 KRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFT 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEASRA E NG MI KP+YVA+AQRKE R+A+LQ Q++Q M P Y
Sbjct: 367 SPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQRMSGLMPPPGAQVAAAY 426
Query: 241 PPGPSGLGQQFLYGQAPPAIIP--PQ-AGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
PP +Y APPA++P PQ G YQ PV+
Sbjct: 427 PP---------VYYAAPPALLPQVPQRQGLMYQ-------------------PVM----- 453
Query: 298 GQRPGGRRG--AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA---GSML 352
RPG R G A P + + QPLP Y L RN + P + + G M
Sbjct: 454 --RPGWRTGPLAPPGRPSLQPLP-------------PYALVRNKKGVPLSISSYIVGVMQ 498
Query: 353 PVPVD----MGAGIPRRDASVGQP-------MPI--TALSTALANASPEQQRTLLGESLY 399
P + G PR A+ G P MP+ + + ++ ASP+QQ+ LLGE L+
Sbjct: 499 QRPRQAMKYVNNGRPRDGAAAGGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLLGERLF 558
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
PLV + D A K+TGMLLEMD +E+L LLE+PEAL +KV EA++VL+
Sbjct: 559 PLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALASKVDEAVQVLQ 606
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 13/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLDES ++ L F +G I S + DG+SK +GFV+FE
Sbjct: 114 HRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKIAHQ-DGRSKGYGFVHFE 172
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NG + ++ +V K K+S+R A ET KF N+++K
Sbjct: 173 TDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDR--------LAATGET--KFT--NVFVK 220
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + +E++ E FS FG IT+ +M+D + SKG GFV F PE A A+ MN +
Sbjct: 221 NLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQL 280
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
S+ +YV AQ+K ER L+ QF + R
Sbjct: 281 GSRTIYVGRAQKKAEREQILRRQFEEKR 308
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 18/187 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LDE+ + L IF + G +TS V RD +S +G+VN+ + DA +A+EA
Sbjct: 38 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 97
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + + + + G N++IKNL +SID++ L
Sbjct: 98 LNYTPINGKTIRIMWSHRDPSTRKSGVG----------------NIFIKNLDESIDNKAL 141
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG I SCK+ G SKG GFV F T E A+ A+ ++NG +V K ++VA
Sbjct: 142 HDTFIAFGPILSCKIAHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFV 200
Query: 209 RKEERRA 215
++ +R A
Sbjct: 201 KRSDRLA 207
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 189
G++LY+ +L +++ + +L +FS+ G +TS +V RD + S G G+V +S+ +A RA+
Sbjct: 36 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAM 95
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERR 214
+N I K + + + R R
Sbjct: 96 EALNYTPINGKTIRIMWSHRDPSTR 120
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 196/483 (40%), Positives = 276/483 (57%), Gaps = 36/483 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 97 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 156
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 157 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 216
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 217 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 275
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 276 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 335
Query: 239 MYPPGPSGL----------------GQQFLYGQAPPAIIPPQAGFGYQQQLVPG-MRPAG 281
P PSG Q P Q + Q +PG +RPA
Sbjct: 336 YQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPA- 394
Query: 282 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD 341
AP P F + Q + +R A QT P P P R +
Sbjct: 395 APRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AATAATPSVRTVPQ 447
Query: 342 FPFDMGAGS-MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 400
+ + G + + + + V P+TA + LA+A P++Q+ +LGE L+P
Sbjct: 448 YKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFP 505
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQAN 455
L++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N
Sbjct: 506 LIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVN 565
Query: 456 NPA 458
NP
Sbjct: 566 NPT 568
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 24 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 82
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 83 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 132
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 133 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 192
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 193 NGKQIYVGRAQKKVERQTELKRKFEQMK 220
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 200/487 (41%), Positives = 285/487 (58%), Gaps = 49/487 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R V P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVIN 398
Query: 235 PRMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAG 281
P P P G P + Y + A + P + Q Q + +RPA
Sbjct: 399 PYQPAPPSGYFMAAIPQTQNRAAYYPASQIAQLRPSPRWTAQGARPHPFQNMPSAIRPA- 457
Query: 282 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQD 341
AP P F + Q + +R A QT P P A P R +
Sbjct: 458 APRPPFGTMRPASTQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQ 510
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLL 394
+ + G + P P+ ++ QP P+TA + LA+A P++Q+ +L
Sbjct: 511 YKYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQML 562
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSV 449
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL +
Sbjct: 563 GERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Query: 450 AQQQANN 456
AQ+ NN
Sbjct: 623 AQKAVNN 629
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 277/475 (58%), Gaps = 50/475 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQREAGMRALPANAILN 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P G F+ PA+ PQA G P P P + QQG
Sbjct: 400 QFQPAAGGY---FV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA----------YRYPLGRNMQDF------ 342
RP G +G + P P + H + P G+A R + +Q+
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRAAV 499
Query: 343 ---------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
P+ + P P P+ V P+TA + LA A P++Q+ +
Sbjct: 500 AAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQM 557
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 612
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 195/457 (42%), Positives = 265/457 (57%), Gaps = 44/457 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K++R+ + + NV+VKNLD + T E+ +K+F +YG ITSA
Sbjct: 230 MLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSA 289
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFVNF + AAKAVE LN +F ++ ++G+AQKKSERE+EL+ +
Sbjct: 290 AIATDQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAY 349
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NLYIKNL + DDE+L+E F+ FGT TS KVMR P+G S+G GFV
Sbjct: 350 EAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGASRGFGFVC 409
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
+S PEEA++A+AEMNGKMI ++PLYVA+AQRK+ R +L AQ +Q+R +
Sbjct: 410 YSAPEEANKAVAEMNGKMIENRPLYVALAQRKDVRHQQLAAQMMQHNQLRLQQQQAAAAA 469
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
MYP P +Y PPA AG G Q +RP AP
Sbjct: 470 AAQMYPGAPG------MYYPQPPAA----AGMG---QFPGQVRPQYAPGI---------- 506
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
QG P + AGP P Q PP G +P G P A
Sbjct: 507 MQGMPPMAGQPAGPYP---------PGQFPPAGGM--FPQGYRPPRPPRGAAAPPAGAPA 555
Query: 356 VDMGAGIPRRDASV-GQPM----PITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
R A+V QP+ P + ALANASPE+Q+ +LGE++YP + + A
Sbjct: 556 GVPAGAGAPRTAAVPAQPVQPAQPEVLTAAALANASPEEQKQMLGEAIYPKIASTQPQLA 615
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
K+TGM+LE+ E+LHL+E EAL +KV EA+ VLR
Sbjct: 616 GKLTGMILELPVGELLHLVEDDEALASKVDEALTVLR 652
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
+++V L+ + + L +IF G ++S V RD +S + +VNF NA+D+ +A+E
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN R + +Q+ + + +G N++IKNL ++ID++
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQG----------------NIFIKNLDEAIDNKA 183
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + F+ FG I SCKV + G S G GFV + + + A A+ +NG ++ K +YV
Sbjct: 184 LHDTFAAFGKILSCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHH 242
Query: 208 QRKEERRARLQ---AQFSQMRPVAMGPSV 233
K++R+A+++ A ++ + + P+V
Sbjct: 243 ISKKDRQAKIEEARAHYTNVYVKNLDPAV 271
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 200/461 (43%), Positives = 280/461 (60%), Gaps = 27/461 (5%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E T+E L+ +F +YG ITS
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSY 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
+M DGKSK FGFV FE+ + A AVEALNGK+ D + YVG+AQKK+ER+QELK +
Sbjct: 222 KIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRR 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE E ++++QG+NLY+KNL D+IDDE+L++ FS FGTITS KVM + + SKG GFV
Sbjct: 282 FEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDNR-SKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q +R MG +
Sbjct: 341 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANIRMHQMGQFI 400
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P P+ Q YG A A I + Q + PG + G+ P +P
Sbjct: 401 QPGTSSGYFVPTIPAPQRFYGAAQMAQIRTNPRWPAQTPVRPGAQ--GSANPYGTIPTTY 458
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 353
+ RP + A P PI Q PP PL P +G + P
Sbjct: 459 RA--APRPPN-QSAALRSNINVPRPITGQQ-PPNIQG--RPLASQAVVAPAGLGISNAAP 512
Query: 354 VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
V ++ + P+TA T LA A P++Q+ +LGE L+PL++++ D A K+
Sbjct: 513 V---------QQAVHIQGQEPLTA--TMLAAAPPQEQKQMLGERLFPLIQRMYPDLAGKI 561
Query: 414 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 562 TGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 602
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD S ++ + F +G I S V +D +G SK +GFV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANK 154
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ YVG+ + ERE+EL E+A T N+Y+KN G+ +
Sbjct: 155 SIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLFT-------NVYVKNFGEDLT 204
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
+E+L+ +F ++G ITS K+M G SKG GFVAF +PE A A+ +NGK I+ KPLY
Sbjct: 205 EEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLY 264
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F ++
Sbjct: 265 VGRAQKKAERQQELKRRFEALK 286
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ +
Sbjct: 72 MNFDLIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDRSIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 281/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 35 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 94
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 95 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 154
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 155 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 213
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 214 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 273
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 274 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 332
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 333 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 385
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 386 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 437
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 438 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 497
Query: 456 NPADQLAS 463
A A+
Sbjct: 498 QKAVNSAT 505
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 11/166 (6%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+RD +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + +
Sbjct: 4 VVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 62
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 63 EFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 112
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 113 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 158
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
+CKV+RD +G SKG GFV F T E A RA+ +MNG ++ + ++V + ++ER A L A
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 220 Q 220
+
Sbjct: 60 R 60
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 281/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 281/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 206/491 (41%), Positives = 283/491 (57%), Gaps = 65/491 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
++ PG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QIFQPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG----------------QRPGGRR--------------GAGPVQQTQQPLPIMPHQ 323
G G +PG R G +Q P +
Sbjct: 447 TGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTVGGANMQSRSMAGPAVGVS 506
Query: 324 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
R Y+Y NM++ P M + P PV I ++ P+TA + LA
Sbjct: 507 AQSRPSNYKYT--SNMRNPPQAMAIPT--PTPVQQAVHIQGQE-------PLTA--SMLA 553
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+
Sbjct: 554 AAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAV 613
Query: 444 EVLRSVAQQQA 454
VL++ +QA
Sbjct: 614 AVLQAHQAKQA 624
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 202/493 (40%), Positives = 280/493 (56%), Gaps = 58/493 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNP 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ--QLVPGMRPAG--------APMPNFF 288
P PSG + A P A + Q QL PG R A MPN
Sbjct: 400 YQPAPPSG-----YFMAAIPQAQNRAAYYSANQLAQLRPGPRWATQGVRPQHFQNMPNAM 454
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH------------------A 330
P + Q P A TQ P + ++P +
Sbjct: 455 RPTAPRPQ----PLNTIRAAATTNTQVPRMMASQRIPTQAVNQRPANASAAAAPVRAMPQ 510
Query: 331 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
Y+Y G RN Q +M V + GQ P+TA + LA A P++
Sbjct: 511 YKYAAGVRNTQQHMASQPQVTMQQPAVHVQ----------GQE-PLTA--SMLAAAPPQE 557
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 558 QKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 617
Query: 450 ----AQQQANNPA 458
A Q+++ PA
Sbjct: 618 QAKEAAQKSSTPA 630
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + + N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKELFS++G S +VM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGRQVYVGRAQKKGERQNELKRKFEQMK 284
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +PL + +QR
Sbjct: 72 MNFDVIKGRPLRIMWSQR 89
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 199/490 (40%), Positives = 278/490 (56%), Gaps = 66/490 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
RP G +G + P P + H P R DF A L
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRHLAPTGSEC----PDRLAMDFGGAGAAQQGLTDSCQS 496
Query: 359 GAGIP-----------------------RRDASVGQPMPITA-----------------L 378
G G+P + +SV P P
Sbjct: 497 GGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLT 556
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 557 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 616
Query: 439 VAEAMEVLRS 448
V EA+ VL++
Sbjct: 617 VDEAVAVLQA 626
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 129 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 188
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 189 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 248
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 249 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 307
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVQAVPNPVINP 367
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 368 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 426
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 427 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 479
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 480 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 531
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 532 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 590
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 11/166 (6%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + +
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 157 EFT----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 50/192 (26%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N FD +KG+ + M D
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDP-------------------- 91
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
++ V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 92 --------SLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 142
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 143 SRKEREAELGAR 154
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 58/479 (12%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + D LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-- 236
FS+P+EA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVS 293
+ + P P G F+ PA+ PQA Y + MRP
Sbjct: 398 INQFQPTPGGY---FM-----PAV--PQAQNRPPYYAPNQIAQMRPN------------P 435
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG---HAYRYPLGRNMQDF-- 342
+ QQG RP G +G + P P + H P RG R + +Q+
Sbjct: 436 RWQQGGRPQGFQGVPNTIRQSGPCPALRHLTPASNTQASRGLPTTPQRVGVPTAVQNLSP 495
Query: 343 -------------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
P+ A P P P+ V P+TA + LA A P++
Sbjct: 496 RPSVATPAPRAVPPYKYAANVRSPHPAIQPLQTPQPAVHVQGQEPLTA--SMLAAAPPQE 553
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 554 QKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD +LKELFS++G S KVM DPSG SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 281/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SQKEREAELGAR 186
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 207/494 (41%), Positives = 288/494 (58%), Gaps = 59/494 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNP 399
Query: 239 MYPPGPSGL---------GQQFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGA 282
P PSG + Y A + P + Q Q +PG MRP+ A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYSANQLAQLRPSPRWTTQGVRPQHFQNMPGAMRPS-A 458
Query: 283 PMP---NFFVPVVSQGQQGQR-------PG---GRRGAGPVQQTQQPLPIMPHQMPPRGH 329
P P N P + Q R P G+R AG P+ MP
Sbjct: 459 PRPQALNAIRPTAAGNAQVPRMMASQRMPAQTLGQRAAGASTTAAAPVRTMPQ------- 511
Query: 330 AYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
Y+Y G RN Q S VP+ A + + GQ P+TA + LA+A P+
Sbjct: 512 -YKYAAGVRNPQQH-----MASQPQVPMQQPAVLVQ-----GQE-PLTA--SMLASAPPQ 557
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++K+ EA+ VL++
Sbjct: 558 EQKQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSELLHMLESPESLRSKMDEAVAVLQA 617
Query: 449 V----AQQQANNPA 458
A Q++ PA
Sbjct: 618 HQAKEAAQKSTTPA 631
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + + N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKELFS++G S +VM D G SKG GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGRQVYVGRAQKKGERQNELKRKFEQMK 284
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +PL + +QR
Sbjct: 72 MNFDVIKGRPLRIMWSQR 89
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 201/481 (41%), Positives = 283/481 (58%), Gaps = 63/481 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD- 357
RP G +G + P P + H + P G+A P R + +G +P V
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA---PASRGLPTTTQRVG----VPTAVQN 492
Query: 358 ------------------MGAGIPRRDASVGQPM------------PITALSTALANASP 387
A R QP+ P+TA + LA A P
Sbjct: 493 LAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAQPAVHVQGQEPLTA--SMLAAAPP 550
Query: 388 EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 551 QEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 610
Query: 448 S 448
+
Sbjct: 611 A 611
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 97 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 156
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 157 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 216
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 217 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 275
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 276 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 335
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 336 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 394
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 395 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 447
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 448 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 499
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 500 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 559
Query: 456 NPADQLAS 463
A A+
Sbjct: 560 QKAVNSAT 567
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 24 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 82
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 83 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 132
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 133 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 192
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 193 NGKQIYVGRAQKKVERQTELKRKFEQMK 220
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 181 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 240
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 241 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 300
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 301 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 359
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 360 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 419
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 420 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 478
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 479 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 531
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 532 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 583
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 584 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 642
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 108 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 166
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 167 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 216
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 217 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 276
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 277 NGKQIYVGRAQKKVERQTELKRKFEQMK 304
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 208/491 (42%), Positives = 285/491 (58%), Gaps = 65/491 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
++ PG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QIFQPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG------------QRPGGRRGAGPVQQTQQPLPIMPHQ------MPPRGHA----- 330
G G + P + AG ++ T PI Q M R A
Sbjct: 447 TGSSGFATMQGPFRAAPRAPTAQ--AGTMRNTLSARPITGQQAVGGANMQNRSMAGPAVG 504
Query: 331 -------YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
Y NM++ P M + P PV I ++ P+TA + LA
Sbjct: 505 VSAQSRPSNYKYTSNMRNPPQAMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLA 553
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+
Sbjct: 554 AAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAV 613
Query: 444 EVLRSVAQQQA 454
VL++ +QA
Sbjct: 614 AVLQAHQAKQA 624
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ D+ +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 102 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 161
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 162 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 221
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 222 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 280
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 281 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 340
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 341 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 399
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 400 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 452
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 453 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 504
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 505 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 564
Query: 456 NPADQLAS 463
A A+
Sbjct: 565 QKAVNSAT 572
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 29 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 87
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 88 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 137
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 138 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 197
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 198 NGKQIYVGRAQKKVERQTELKRKFEQMK 225
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 281/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D G SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLHKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 165 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 224
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 225 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 284
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 285 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 343
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 344 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 403
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 404 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 462
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 463 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 515
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 516 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 567
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 568 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 627
Query: 456 NPADQLAS 463
A A+
Sbjct: 628 QKAVNSAT 635
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 125/196 (63%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 104 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 162
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK
Sbjct: 163 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLK 212
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 213 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 272
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ +F QM+
Sbjct: 273 KVERQTELKRKFEQMK 288
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 14/192 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K V G N++IKNL SID++ L
Sbjct: 72 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVGGGVG-NIFIKNLDKSIDNKAL 119
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 120 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 178
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 179 SRKEREAELGAR 190
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 202/473 (42%), Positives = 283/473 (59%), Gaps = 30/473 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ +K +F N++VKN+D T E+ ++F +G ITSA
Sbjct: 158 MLLNDKKVYVGHHISRKERQSKIEEMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSA 217
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D +GKS+ FGFVNF+ ++A AVEAL+ R+ +V +AQKK+ERE+EL+ +
Sbjct: 218 VLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSY 277
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D IDDE+L+ F FG ITS KVMRD GISKG GFV
Sbjct: 278 EQAKMEKMSKYQGVNLYIKNLEDDIDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVC 337
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KMI +KPLYV++AQR+E RR +L++Q +Q + M + +P
Sbjct: 338 FSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAATGIP 397
Query: 239 -MYPPGP----------SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNF 287
Y GP G + + G P ++PP+ + Q VPGM P+P
Sbjct: 398 GGYINGPMYYPPGPGAYPPPGGRGMMGYGQPGMLPPRPRYAPNGQ-VPGM-----PLPTP 451
Query: 288 FVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG 347
+ Q G PG R P Q + P P P+ P G A R P G
Sbjct: 452 YGQAPPQAYGGM-PGYPRAPRPPQAGRAPPPTDPNAPPANGAAPR-PAGPQGAPAARPPP 509
Query: 348 AGSMLPVPVDMGAGIPR----RDASVGQ-PMP----ITALSTALANASPEQQRTLLGESL 398
AG+ P G P+ R + GQ P P T + ALANASP +Q+ +LGE +
Sbjct: 510 AGAQPPAARGPAPGRPQQQPPRGPAPGQGPAPGGEVPTITAAALANASPMEQKQMLGEVI 569
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
Y + Q + + A K+TGMLLEMD TE+LHLLE+P+++ KV EA+ VL +Q
Sbjct: 570 YMKIVQSQPELAGKITGMLLEMDNTELLHLLETPDSMNTKVNEALAVLHEFSQ 622
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G+SK +GFV++E
Sbjct: 84 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYE 143
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG +D++ YVG + ER+ +E+K QF N+
Sbjct: 144 TAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKNQF-------------TNI 190
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + E+ +LF FG ITS + D G S+G GFV F T EEA A+ ++
Sbjct: 191 YVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHD 250
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + L+VA AQ+K ER L+ + Q +
Sbjct: 251 SDVKGRKLFVARAQKKAEREEELRRSYEQAK 281
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 8 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 67
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 68 LNYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 111
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 112 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 171
Query: 209 RKEERRARLQA---QFSQMRPVAMGPSV 233
++ER+++++ QF+ + + P V
Sbjct: 172 SRKERQSKIEEMKNQFTNIYVKNVDPEV 199
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 197 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 257 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 317 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 375
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 376 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 435
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 436 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 494
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 495 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 547
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 548 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 599
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 600 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 659
Query: 456 NPADQLAS 463
A A+
Sbjct: 660 QKAVNSAT 667
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 124 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 183 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 232
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 233 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 292
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 293 NGKQIYVGRAQKKVERQTELKRKFEQMK 320
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 124 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 183
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 184 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 243
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 244 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 302
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 303 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 362
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 363 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 421
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 422 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 474
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 475 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 526
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 527 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 585
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 51 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 109
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 110 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 159
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 160 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 219
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 220 NGKQIYVGRAQKKVERQTELKRKFEQMK 247
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 52 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 111
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 112 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 171
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 172 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 230
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 231 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 290
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 291 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 349
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 350 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 402
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA A P++Q+ +LG
Sbjct: 403 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLAFAPPQEQKQMLG 454
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 455 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 514
Query: 456 NPADQLAS 463
A A+
Sbjct: 515 QKAVNSAT 522
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 11/184 (5%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101
++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +V
Sbjct: 3 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 61
Query: 102 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161
G+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF +FG S
Sbjct: 62 GRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFGKFGPALSV 111
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F
Sbjct: 112 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 171
Query: 222 SQMR 225
QM+
Sbjct: 172 EQMK 175
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
ID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + +
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 203 YVAVAQRKEERRARLQAQ 220
+V + ++ER A L A+
Sbjct: 60 FVGRFKSRKEREAELGAR 77
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 199/468 (42%), Positives = 280/468 (59%), Gaps = 36/468 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + D LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-- 236
FS+P+EA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 237 MPMYPPGPSGLGQQFLYG-----QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
+ + P P G F+ PP P Q Q + P + G P VP
Sbjct: 398 INQFQPTPGGY---FMPAVPQAQNRPPYYAPNQIA---QMRPNPRWQQGGRPQGFQGVPN 451
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQ--QPLPIMPHQ---------MPPRGHAYRYPLGRNMQ 340
+ Q G RP R P TQ + LP P + + PR + P R +
Sbjct: 452 TIR-QSGPRPALRH-LTPASNTQASRGLPTTPQRVGVPTAVQNLSPRP-SVATPAPRAVP 508
Query: 341 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 400
P+ A P P P+ V P+TA + LA A P++Q+ +LGE L+P
Sbjct: 509 --PYKYAANVRSPHPAIQPLQTPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFP 564
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
L++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 565 LIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD +LKELFS++G S KVM DPSG SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 623
Query: 456 NPADQLAS 463
A A+
Sbjct: 624 QKAVNSAT 631
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A + E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 206/491 (41%), Positives = 282/491 (57%), Gaps = 65/491 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK +F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
++ PG G G F+ P I PQ +G Q P PN P
Sbjct: 398 ----QIFQPG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQ 446
Query: 294 QGQQG----------------QRPGGRR--------------GAGPVQQTQQPLPIMPHQ 323
G G +PG R G +Q P +
Sbjct: 447 TGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTVGGANMQNRSMAGPAVGVT 506
Query: 324 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
R Y+Y NM++ P M + P PV I ++ P+TA + LA
Sbjct: 507 AQSRPSNYKYT--SNMRNPPQAMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLA 553
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+
Sbjct: 554 AAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAV 613
Query: 444 EVLRSVAQQQA 454
VL++ +QA
Sbjct: 614 AVLQAHQAKQA 624
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLK++F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 198 NFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 AEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 284/506 (56%), Gaps = 82/506 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM----------------QDF 342
RP G +G + P P + H + P G+A P R + DF
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDF 496
Query: 343 PFDMGAGSMLPVPVDMGAGIP-----------------------RRDASVGQPMPITA-- 377
A L G G+P + +SV P P
Sbjct: 497 GGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 556
Query: 378 ---------------LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D
Sbjct: 557 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 616
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRS 448
+E+LH+LESPE+L++KV EA+ VL++
Sbjct: 617 SELLHMLESPESLRSKVDEAVAVLQA 642
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 199/486 (40%), Positives = 287/486 (59%), Gaps = 40/486 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 181 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 240
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 241 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 300
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 301 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 359
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R V + P
Sbjct: 360 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 419
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPM 284
PP P + Y + A + P + Q Q +PG +RPA AP
Sbjct: 420 YQPPSGYFMAAIPQTQNRAAYYPASQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-APR 478
Query: 285 PNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 344
P F + Q + +R A QT P P A P R + + +
Sbjct: 479 PPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQYKY 531
Query: 345 DMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGES 397
G + P P+ ++ QP P+TA + LA+A P++Q+ +LGE
Sbjct: 532 AAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGER 583
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 584 LFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 643
Query: 458 ADQLAS 463
A A+
Sbjct: 644 AVNSAT 649
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 108 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 166
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 167 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 216
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 217 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 276
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 277 NGKQIYVGRAQKKVERQTELKRKFEQMK 304
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRVVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S + L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID + L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDIKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 149
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 150 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 209
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 210 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 268
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 269 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 328
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 329 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 387
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 388 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 440
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 441 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 492
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 493 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 552
Query: 456 NPADQLAS 463
A A+
Sbjct: 553 QKAVNSAT 560
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 76 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 125
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 126 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 185
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 186 NGKQIYVGRAQKKVERQTELKRKFEQMK 213
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 202/485 (41%), Positives = 284/485 (58%), Gaps = 50/485 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE ++A KAVE +NGK + + +VG+AQKK+ER+ ELK +F
Sbjct: 221 KVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ Q+ Y P P P + QQG
Sbjct: 398 INQFQPAA-GGYFM-----PAVPQAQSRPTY---YAPNQMTQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMP-----PRG---HAYRYPLGRNMQDF-------- 342
RP G +G + P P + H P RG A R +G Q+
Sbjct: 441 GRPQGFQGMPNAMRQSGPRPALRHLSPANAPASRGLPAAAQRVGVGTAAQNLAPRPPVAA 500
Query: 343 -------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLG 395
P+ + P P P+ V P+TA + LA A P++Q+ +LG
Sbjct: 501 PAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVLVQGQEPLTA--SMLAAAPPQEQKQMLG 558
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA
Sbjct: 559 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQAK 615
Query: 456 NPADQ 460
A Q
Sbjct: 616 KEAAQ 620
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELF ++G S KVM DP+G SKG GFV+F EEA++A+ EMNGK I
Sbjct: 197 NFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K L+V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMLFVGRAQKKAERQAELKRRFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D I+DE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGINDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHAQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 328 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 387
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 388 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 447
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 448 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 506
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 507 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 566
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 567 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 625
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 626 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 678
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 679 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 730
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 731 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 790
Query: 456 NPADQLAS 463
A A+
Sbjct: 791 QKAVNSAT 798
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 255 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 313
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 314 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 363
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 364 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 423
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 424 NGKQIYVGRAQKKVERQTELKRKFEQMK 451
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 207 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 266
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 267 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 326
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 327 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 385
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 386 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 445
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 446 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 504
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 505 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 557
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 558 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 609
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 610 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 668
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 134 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 192
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 193 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 242
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 243 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 302
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 303 NGKQIYVGRAQKKVERQTELKRKFEQMK 330
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 122/218 (55%), Gaps = 17/218 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 78 NADDAAKAVEALNGKKFD---------DREWYVGKAQKKSEREQ--ELKGQFEQAMKETV 126
+ A +A+E +NG + D E A++ + +KG+ + M
Sbjct: 76 TQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQR 135
Query: 127 D---KFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
D + G+ N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T
Sbjct: 136 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 194
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
E A RA+ +MNG ++ + ++V + ++ER A L A+
Sbjct: 195 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 232
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 197/482 (40%), Positives = 290/482 (60%), Gaps = 31/482 (6%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ER E + K K F NV+VKNL+E+ D+ L+++F +G I SA
Sbjct: 162 MLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISA 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+M +G+ + FGFV+F++ + AAKAVE LN K+ + +E YVG+AQKK+ER+ ELK +F
Sbjct: 222 KMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKF 281
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E ++++QG+NLY+KNL + IDDE+L++ FS+FGTITS +VM + G +KG GFV
Sbjct: 282 ERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTE-GGRTKGFGFVC 340
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++V+KPLYVA+AQRKE+R+A L AQ+ Q R M
Sbjct: 341 FSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLAAQYMQ-RIAGMRMQGQGVNQ 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPA-GAPMPNFFVPVVSQGQQ 297
++ PG +G F+ P + GF Q+ P +R PN P
Sbjct: 400 IFGPGGTGY---FV----PTMAQTQRGGFYAPTQIAPQVRSTPRWQAPN---PRAQTAGY 449
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR-NMQDFPFDMGAGSMLPVPV 356
Q PG P TQQ + + P G +R P + N P M AG P
Sbjct: 450 AQLPGSGPMRNPRPNTQQ-VRAGANSRPITGE-FRMPGAQVNRPAQPGAMQAGGQQRAPF 507
Query: 357 DMGAGIPRRDASV----GQPMPITAL---------STALANASPEQQRTLLGESLYPLVE 403
+ V QP TA+ ++ LA A+P++Q+ +LGE L+PL++
Sbjct: 508 KYTQAVRNATGQVPGGAAQPQAQTAVVIQGQEPLTASMLAAAAPQEQKQMLGERLFPLIQ 567
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 463
+ D A K+TGMLLE+D +E+LH+LES E+LKAKV EA+ VL++ +++ +P L S
Sbjct: 568 SMYPDLAGKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQAHQAKESTDPIPSLKS 627
Query: 464 LS 465
S
Sbjct: 628 SS 629
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 119/201 (59%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD++ ++ L F +G I S + D +G S +GFV+FE + A
Sbjct: 96 KSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARN 154
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ +VG+ + ER + L + KF N+Y+KNL +++D
Sbjct: 155 SIEKVNGMLLNGKKVFVGRFMSRKERLEML--------GDKAKKF--TNVYVKNLNETMD 204
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+KL+E+F FG I S K+M G +G GFV+F E A++A+ E+N K + K +YV
Sbjct: 205 DKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYV 264
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F +M+
Sbjct: 265 GRAQKKAERQAELKEKFERMK 285
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ L
Sbjct: 73 MNFDAIKGRPIRIMWSQRDPSLRKSGVG----------------NIFIKNLDKNIDNKAL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D +G S G GFV F T E A ++ ++NG ++ K ++V
Sbjct: 117 YDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFM 175
Query: 209 RKEER 213
++ER
Sbjct: 176 SRKER 180
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 202/486 (41%), Positives = 281/486 (57%), Gaps = 51/486 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ Q+ Y P P P + QQG
Sbjct: 398 INQFQPAA-GGYFM-----PAVPQAQSRPTY---YAPNQMTQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG---HAYRYPLGRNMQDF------- 342
RP G +G + P P + H P RG A R +G Q+
Sbjct: 441 GRPQGFQGMPNAMRQSGPRPALRHLAPAGSAPASRGLPAAAQRVGVGTAAQNLGPRPPVA 500
Query: 343 --------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
P+ + P P P+ V P+TA + LA A P++Q+ +L
Sbjct: 501 APAPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQML 558
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA
Sbjct: 559 GERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQA 615
Query: 455 NNPADQ 460
A Q
Sbjct: 616 KKEAAQ 621
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELFS++G S KVM DP+G SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 283/506 (55%), Gaps = 82/506 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM----------------QDF 342
RP G +G + P P + H + P G+A P R + DF
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDF 496
Query: 343 PFDMGAGSMLPVPVDMGAGIP-----------------------RRDASVGQPMPITA-- 377
A L G G+P + +SV P P
Sbjct: 497 GGAGAAQQGLTDSCQSGGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 556
Query: 378 ---------------LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D
Sbjct: 557 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 616
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRS 448
+E+LH+LESPE+L++KV EA+ VL++
Sbjct: 617 SELLHMLESPESLRSKVDEAVAVLQA 642
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 283/488 (57%), Gaps = 42/488 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 149
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 150 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 209
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 210 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 268
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 269 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 328
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 329 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 387
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 388 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVAQY 440
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 441 KYAPGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 492
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 493 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 552
Query: 456 NPADQLAS 463
A A+
Sbjct: 553 QKAVNSAT 560
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 76 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 125
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 126 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 185
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 186 NGKQIYVGRAQKKVERQTELKRKFEQMK 213
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 204/492 (41%), Positives = 284/492 (57%), Gaps = 67/492 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK+ F +YG S
Sbjct: 161 MLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-- 236
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTL 397
Query: 237 MPMYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAG-APMP 285
+ + P P G F+ Q+ P P + Q+ PG RP G PMP
Sbjct: 398 INQFQPAPGGY---FVPAVPQTQSRPTYYAP----NHMAQIRPGPRWQQTGRPQGFQPMP 450
Query: 286 NFFV------------PVVSQGQQG-----QRPGGRRGAGPVQQTQQPLPIMPHQMPPRG 328
N P +QG +G QR G + P +PP
Sbjct: 451 NTLRHSGPRQSLRHMPPSNAQGTRGIPGVTQRVGVSSSTQTMGPRPPVSAPPPRAVPP-- 508
Query: 329 HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
Y+Y + P+PV P+ V P+TA + LA+A P+
Sbjct: 509 --YKY----------------TRCPLPVVQPLQAPQPAVHVQGQEPLTA--SMLASAPPQ 548
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 549 EQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 608
Query: 449 VAQQQANNPADQ 460
QA A Q
Sbjct: 609 ---HQAKKDAAQ 617
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE FS++G S KVM DPSG SKG GFV+F E+A++A+ +MNGK +
Sbjct: 197 NFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKIMFVGRAQKKVERQAELKRRFEQLK 284
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
+ ER A L A+
Sbjct: 175 CRREREAELGAK 186
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 279/476 (58%), Gaps = 36/476 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT M PR A ++
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQT----------MGPRPAAAATAATPAVRTV 508
Query: 343 P-FDMGAGSMLP---VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
P + AG P + + + V P+TA + LA+A P++Q+ +LGE L
Sbjct: 509 PQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERL 566
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 567 FPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 202/474 (42%), Positives = 282/474 (59%), Gaps = 58/474 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER+ +++ F NV+ KN+D TDE+ +K+F YG ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEESRANFTNVYAKNVDPDVTDEEFEKLFTRYGKITSC 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD DGKSK FGFVNFE+ ++A AV+ L+ F ++ +V +AQKKSERE+EL+ +
Sbjct: 257 VLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + KFQG+NLY+KN+ +S DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGP 231
+S PEEA++A++EMNGKM+ ++PLYVA+AQRK++RR +L+AQ Q + A G
Sbjct: 377 YSVPEEANKAVSEMNGKMLDNRPLYVALAQRKDDRRQQLEAQIMQRNQLRLQQQAAAQGM 436
Query: 232 SVP------PRMPMYPPGPSGLGQQFLYGQAPPAIIP---PQAGFGYQQQLVPGM----- 277
P P+ +P P G+ + Y AP ++P P A +G Q GM
Sbjct: 437 GYPGPGMYYPQPGAFPGQPGGMMPRPRY--APAGMMPQGMPMAPYGQPGQFPAGMMPQGY 494
Query: 278 RPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR 337
RPA P G RP P + QP+P P PRG A R P GR
Sbjct: 495 RPARPPRGAPNAAGGPAPPAGARPPAGVNGAP-RPAGQPVPGQPM---PRGPAAR-PAGR 549
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
P+ +A+ GQP + ALA ASPE+Q+ +LGE+
Sbjct: 550 -------------------------PQGEAA-GQPG--ALTAAALAKASPEEQKQMLGEA 581
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+YP V + + A K+TGM+LE+ TE+LHLL+ EAL AKV EA+EVL+ Q
Sbjct: 582 IYPKVAASQPELAGKLTGMILELPVTELLHLLDESEALDAKVNEALEVLKEYQQ 635
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 111/204 (54%), Gaps = 11/204 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ +T N+F+KNLD ++ L F +G I S V + G S +GFV++E
Sbjct: 124 QRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++ +NG +D++ YVG + ER+ ++ +E+ F N+Y K
Sbjct: 183 TAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKI--------EESRANF--TNVYAK 232
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + DE+ ++LF+ +G ITSC + RD G SKG GFV F EA A+ E++
Sbjct: 233 NVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDF 292
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
+ L+VA AQ+K ER L+ +
Sbjct: 293 KGQKLFVARAQKKSEREEELRRSY 316
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
+++V LD S T+ L +IF G + S V RD +S + +VNF NA D +A+E
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN +R + +Q+ + A++ T QG N++IKNL ID++
Sbjct: 107 QLNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKA 150
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + F+ FG I SCKV + +G S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 151 LHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHH 209
Query: 208 QRKEERRARLQ---AQFSQMRPVAMGPSV 233
++ER+A+++ A F+ + + P V
Sbjct: 210 IPRKERQAKIEESRANFTNVYAKNVDPDV 238
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 201/484 (41%), Positives = 283/484 (58%), Gaps = 53/484 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAG---------------FGYQQQLVPGMRPAGAP 283
+ P+ G F+ PA+ PQA F QLV +RP A
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQASKECQVLYASLGLVQLFAIWLQLVM-LRPLVAS 448
Query: 284 MPNFFVPVVSQGQQGQRPGGRR------------GAGPVQ-------QTQQPLPIMPHQM 324
+ V + GG R GAG Q Q+ +P +
Sbjct: 449 LLPLRESVSKLALRSVAWGGGRSECPDRLAMDFGGAGAAQQGLTDSCQSGGGVPTAVQNL 508
Query: 325 PPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALAN 384
PR A R + P+ + P P P+ V P+TA + LA
Sbjct: 509 APR-TAVATAAPRAVA--PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAA 563
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+
Sbjct: 564 APPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 623
Query: 445 VLRS 448
VL++
Sbjct: 624 VLQA 627
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 130/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I K ++V
Sbjct: 204 DESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F Q++
Sbjct: 264 GRAQKKVERQAELKRKFEQLK 284
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 200/505 (39%), Positives = 287/505 (56%), Gaps = 81/505 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
RP G +G + P P + H + P G+A P R + +G+ + +D
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDF 496
Query: 359 G---------------AGIP-----------------------RRDASVGQPMPIT---- 376
G G+P + +SV P P
Sbjct: 497 GGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQ 556
Query: 377 -------------ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 423
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +
Sbjct: 557 APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS 616
Query: 424 EVLHLLESPEALKAKVAEAMEVLRS 448
E+LH+LESPE+L++KV EA+ VL++
Sbjct: 617 ELLHMLESPESLRSKVDEAVAVLQA 641
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 199/481 (41%), Positives = 277/481 (57%), Gaps = 47/481 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE +DA KAV+ +NGK + + YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPP-----AIIPP--------------QAGFGYQQQLVPG-MR 278
Y P PS + PP A PP Q + Q +PG +R
Sbjct: 398 PYQPPPSS----YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIR 453
Query: 279 PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH----AYRYP 334
P P F + Q + +R A QT P P Y+Y
Sbjct: 454 PTAPRPPTFSTMRPASNQVPRVVSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYA 513
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN Q +M V + GQ P+TA + LA A P++Q+ +
Sbjct: 514 AGVRNPQQHLNTQPQVAMQQPAVHVQ----------GQE-PLTA--SMLAAAPPQEQKQM 560
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++
Sbjct: 561 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE 620
Query: 454 A 454
A
Sbjct: 621 A 621
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE+F ++G S KVM D +G SKG GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKAIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 199/497 (40%), Positives = 277/497 (55%), Gaps = 85/497 (17%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVA-IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML++ K+VFVGHF+ ++ER E + + K+ N++VKN + +D++ + +F + G I S
Sbjct: 170 MLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSC 229
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD GKS+ FGFV++E + A KAVE LN K+FD R YV +AQKKSER L+ Q+
Sbjct: 230 VVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQY 289
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + +FQG+NLY+KNL D IDD KL++ F+ FGTITS KVM D GIS+G GFV
Sbjct: 290 EQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVC 349
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG++I+SKPLYVA+AQRKE+R+A+L AQ+ Q R+P
Sbjct: 350 FSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRKAQLAAQYVQRMSTL-------RIP 402
Query: 239 MYPPGPSGLGQQFLY-GQAPPAI---------------IPPQAGFGYQQQLVP------- 275
PG G+ Q F G P + +P + + QQ +
Sbjct: 403 Q--PGQPGVNQMFQQGGYYMPGMHQGQQQQQRFYATQQMPARPRWQNQQMMRNSGGGSSY 460
Query: 276 -------------GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ-TQQPLPIMP 321
GMR AG P SQGQQ P R A + QP
Sbjct: 461 GGIGGGSQMGRGRGMRFAGVPR--------SQGQQNVNPSQRSAAANAALVSNQP----- 507
Query: 322 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA-GIPRRDASVGQPMPITALST 380
+ PP H+ N+++ P P + P +DA L+T
Sbjct: 508 -RHPPYKHS-------NVRNIP------PQAPSQANHQTRAQPAQDAD--------NLTT 545
Query: 381 ALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
L+ QQ+ +LGE LYP VE + + A K+TGMLLE++ EVLH+LES EAL +KV
Sbjct: 546 HLSQVDEPQQKQILGEKLYPRVEAICGSEKAGKITGMLLEIENAEVLHMLESKEALDSKV 605
Query: 440 AEAMEVLRSVAQQQANN 456
EA++VL ++ Q +N
Sbjct: 606 QEAIDVLDKHSKTQESN 622
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 115/200 (57%), Gaps = 10/200 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL++ ++ + F +G I S + D +G SK + FV+FE + A +A+E +
Sbjct: 108 NIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ +VG + ER +++ G A K T NLY+KN D I D++ +
Sbjct: 168 NGMLLSGKKVFVGHFMSRKERMEKI-GNL--AAKYT-------NLYVKNFRDDISDDEFR 217
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF + G I SC VMRD SG S+G GFV++ T E A +A+ +N K + +YVA AQ+
Sbjct: 218 DLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQK 277
Query: 210 KEERRARLQAQFSQMRPVAM 229
K ER A L+ Q+ Q + M
Sbjct: 278 KSERSALLRRQYEQKKQEMM 297
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 17/188 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L + L + F G I+S V RD +S + +VNF+ +DA +A++ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + + +Q+ + G N++IKNL ID++ +
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVG----------------NIFIKNLEKDIDNKAIY 124
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCK+ D +G SKG FV F T E A+RA+ ++NG ++ K ++V
Sbjct: 125 DTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMS 184
Query: 210 KEERRARL 217
++ER ++
Sbjct: 185 RKERMEKI 192
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 204/515 (39%), Positives = 284/515 (55%), Gaps = 100/515 (19%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 149
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 150 KVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 209
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL+ FS FG+ITS KVM + G SKG GFV
Sbjct: 210 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVC 268
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 269 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 322
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ--- 294
S + QF P AG GY VP + P P ++ P ++Q
Sbjct: 323 -----ASAILNQF----------QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRP 362
Query: 295 ---GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM------------ 339
QQG RP G +G + P P + H + P G+A P R +
Sbjct: 363 NPRWQQGGRPQGFQGMPSALRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECP 418
Query: 340 QDFPFDMGAGSML-----------------PVPVDMGAGIPRRDASVG------------ 370
D G P G RR G
Sbjct: 419 DRLAMDFGGAGAAQQGLTDSCQCWRRPYSRAKPCTSGRSCCRRSQGCGSIQVRLQLSAAA 478
Query: 371 ----QPM-------------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
QP+ P+TA + LA A P++Q+ +LGE L+PL++ + + A K+
Sbjct: 479 LPAIQPLQAPQPAVQVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKI 536
Query: 414 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 537 TGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 571
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLDES ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 75
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 76 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 125
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD LKELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 126 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 185
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 186 SGKAIFVGRAQKKVERQAELKRKFEQLK 213
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 199/487 (40%), Positives = 280/487 (57%), Gaps = 36/487 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E D LK++FG++G S
Sbjct: 230 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSV 289
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G SK FGFVNFE +DA KAVE +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 290 KVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKF 349
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 350 EQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 408
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLY+A+AQRKEER+A L Q+ Q +R V + P
Sbjct: 409 FSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNP 468
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPM 284
PP P + Y + A + P + Q Q L +RPA A
Sbjct: 469 YQPPSGYFMTAIPQTQNRPAYYPASQMAPLRPSPRWTSQGARPHPFQNLPGAIRPAAARP 528
Query: 285 P-NFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPR----GHAYRYPLG-RN 338
P P SQ +G R Q PL G Y+Y G RN
Sbjct: 529 PFGSMRPTSSQLPRGVGASQRIVNSSTQALGPPLGASAGAAGAPGVRMGPQYKYAAGVRN 588
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
Q V V A + + V P+TA + LA A P++Q+ +LGE L
Sbjct: 589 PQHH-----------VNVQPQASVQQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERL 635
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A
Sbjct: 636 FPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 695
Query: 459 DQLASLS 465
+ A+ +
Sbjct: 696 VKSAAAT 702
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D G SK +GFV+FE
Sbjct: 157 QRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFE 215
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 216 TRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 265
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD +LK LF +FG S KVM D SG SKG GFV F E+A +A+ EMNGK +
Sbjct: 266 NFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKEL 325
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 326 NGKKIYVGRAQKKGERQTELKRKFEQLK 353
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 278/467 (59%), Gaps = 34/467 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA +AVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ Q+ Y P P P + QG QG
Sbjct: 398 INQFQPAA-GGYFM-----PAVPQAQSRPTY---YAPNQMAQMRPNPRWQQAGRLQGFQG 448
Query: 299 QRPGGRRGAGPV-----------QQTQQPLPIMPHQ--MPPRGH--AYRYPLGRNMQDF- 342
P R +GP Q + LP P + +PP A R P+
Sbjct: 449 M-PNAMRQSGPRPALRHLTPAGNAQASRGLPAAPQRVGVPPAAQNLAPRAPVAAATPRAV 507
Query: 343 -PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL
Sbjct: 508 PPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPL 565
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 566 IQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELFS++G S KVM DPSG SKG GFV+F E+A++A+ +MNGK I
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 3 TTASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N + + +Q+ + G N++IKNL
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNL 106
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++
Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLND 165
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 166 RKVFVGRFKSRKEREAELGAK 186
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 267/483 (55%), Gaps = 67/483 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E E LK IF E+G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVNF N DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 CVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLY+KNL DSIDDEKL++ F+ +GTITS KVM D G S+G GFV
Sbjct: 281 EQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R + GP++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRLASIRAIP-GPAIP 398
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
Q G GY VP +R +PN P
Sbjct: 399 TTY--------------------------QQGSGYYMTSVPQVRSFYNAVPN-LRPAPRW 431
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQM--PPRGHAYRYPLGRNMQ---DFPFDMGAG 349
Q R +G P Q +Q +P P R + + P N Q + G
Sbjct: 432 ASQAPRT---QGPFPAQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGG 488
Query: 350 SMLPVPV------DMGAGIPRRDASVGQPMPITA-----------------LSTALANAS 386
V AG+ + P P+ L+ ++ A+
Sbjct: 489 RAAGTAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAA 548
Query: 387 P-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
P ++Q+ LLGE LYPL++ L A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ V
Sbjct: 549 PLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAV 608
Query: 446 LRS 448
L++
Sbjct: 609 LQA 611
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KN+DES ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE E+ +A++ T N+YIKN G+ ID
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREAEMGA---KAVEFT-------NVYIKNFGEDID 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
EKLK +F+EFG S VM D G S+G GFV F +A RA+ EMNGK + + LYV
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRLERQGELKRKFEQIK 284
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNYEVIKGRPIRIMWSQR 89
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 284/493 (57%), Gaps = 63/493 (12%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E ++E L+ +F ++G ITS
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSY 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV FE+ + A AV+ALNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRR 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI------- 170
FE E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + +
Sbjct: 282 FEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTR 341
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRP 226
SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q MR
Sbjct: 342 SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANMRM 401
Query: 227 VAMGPSVPPRMPMYPPGPSGL-------GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR- 278
MG PPGPS Q++ G I + Q + PG +
Sbjct: 402 HQMGHQ------FMPPGPSSYFVPTIPTAQRYFTGGTQLTPIRSNPRWAAQTPIRPGAQG 455
Query: 279 PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP------------- 325
A M N + P Q G G V P PI Q P
Sbjct: 456 GTAAYMANSYRPSARPPNQPMAMRNNIGLGNV-----PRPITGQQPPNMQGRPLAGQQVV 510
Query: 326 ----PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 381
R ++Y NM++ P M G+M PV I ++ P+TA T
Sbjct: 511 VATGSRAATFKYT--SNMRNPPQAM--GTMPATPVQQAVHIQGQE-------PLTA--TM 557
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA A P++Q+ +LGE L+PL++++ D A K+TGMLLE+D TE+LH+LE E+LK KV E
Sbjct: 558 LAAAQPQEQKQMLGERLFPLIQRMYADLAGKITGMLLEIDNTELLHMLEHNESLKNKVEE 617
Query: 442 AMEVLRSVAQQQA 454
A+ VL++ +QA
Sbjct: 618 AVAVLQAHQAKQA 630
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD S ++ + F +G I S V +D +G SK +GFV+FE + A K
Sbjct: 95 KSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANK 154
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ YVG+ + ERE+EL E+A T N+Y+KN G+ +
Sbjct: 155 SIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLFT-------NVYVKNFGEDLS 204
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
+E+L+ +F +FG ITS KVM G SKG GFVAF +PE A A+ +NGK +V KPLY
Sbjct: 205 EEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLY 264
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F ++
Sbjct: 265 VGRAQKKAERQQELKRRFEALK 286
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ +
Sbjct: 72 MNFDLIRGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDRSIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 272/478 (56%), Gaps = 55/478 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE + KF NV++KN E TDE LK++F +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM+D G+S+ FGFVN+ + +DA KAV +NGK+ + + YVG+AQK+ ER+ ELK +F
Sbjct: 221 RVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+Q ++ + ++QG+NLY+KNL DSIDDE+L++ F+ +GTITS KVM D S SKG GFV
Sbjct: 281 DQIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQ-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQR+EER+A L ++ Q R + P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQ-RLATLRTMASPLID 398
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRP----AGAPMPNFFVPVVSQ 294
Y Q Y P PP F Y V +RP G P P P +Q
Sbjct: 399 SY-------HQSGYYVTLPQ---PPMRSF-YNHSAVSSVRPVPRWTGQP-PRPQGPYTTQ 446
Query: 295 GQQGQRPGGRRGAGPV-----QQTQQPLPIMPHQMP-----------------PRGHAYR 332
G P RRG+ P+ TQ P + Q R Y+
Sbjct: 447 LVSGSVP--RRGSTPIATVRQASTQAPRIVTSTQKTNDIGTQTVGGRTDIASVARSSQYK 504
Query: 333 YPLG-RNMQDFPFDMGAGSMLPVP-VDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
Y RN Q +P P V + + P P+TA + LA A P Q
Sbjct: 505 YASAVRNPQQV-------VTVPAPMVHNDLQLMEPPVHIQGPEPLTA--SVLAAAPPMDQ 555
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ LLGE LYPL+ L + A K+TGMLLE+D +E+LH+LES E+L AKV EA+ VL++
Sbjct: 556 KQLLGERLYPLIHALHPNLAGKITGMLLEIDNSELLHMLESQESLHAKVDEAIAVLQA 613
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KN+DES ++ L F +G I S V+ D G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKG-SKGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE E +AMK T N+YIKN G+
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREVEFGS---KAMKFT-------NVYIKNFGEDFT 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS FG S +VM+D G S+G GFV ++ E+A +A+ EMNGK I K LYV
Sbjct: 204 DEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRLERQGELKRKFDQIK 284
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L + FS G I S +V RD + S G +V F P +A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +P+ + +QR
Sbjct: 72 MNYDVIKGRPIRIMWSQR 89
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 202/506 (39%), Positives = 283/506 (55%), Gaps = 82/506 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 174 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 233
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 234 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 293
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 294 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 352
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 353 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 410
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 411 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 453
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM----------------QDF 342
RP G +G + P P + H + P G+A P R + DF
Sbjct: 454 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDF 509
Query: 343 PFDMGAGSMLPVPVDMGAGIP-----------------------RRDASVGQPMPITA-- 377
A L G G+P + +SV P P
Sbjct: 510 GGAGAAQQGLTDGCQSGGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 569
Query: 378 ---------------LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D
Sbjct: 570 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 629
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRS 448
+E+LH+LESPE+L++KV EA+ VL++
Sbjct: 630 SELLHMLESPESLRSKVDEAVAVLQA 655
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 101 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 159
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 160 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 209
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 210 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 269
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 270 SGKVIFVGRAQKKVERQAELKRKFEQLK 297
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADD-----AA 83
+++V +L T+ L + F G + S V RD +S + +VNF+ D +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTS 71
Query: 84 KAVEALNGKKFDDREWYVGKAQ----KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
+ + + D + V K + S+R+ L+ K V N++IKNL
Sbjct: 72 SSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNL 119
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++
Sbjct: 120 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLND 178
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
+ ++V + ++ER A L A+
Sbjct: 179 RKVFVGRFKSRKEREAELGAK 199
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 200/504 (39%), Positives = 286/504 (56%), Gaps = 80/504 (15%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
RP G +G + P P + H + P G+A P R + +G+ + +D
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDF 496
Query: 359 G---------------AGIP-----------------------RRDASVGQPMPIT---- 376
G G+P + +SV P P
Sbjct: 497 GGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQ 556
Query: 377 ------------ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 424
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E
Sbjct: 557 AQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSE 616
Query: 425 VLHLLESPEALKAKVAEAMEVLRS 448
+LH+LESPE+L++KV EA+ VL++
Sbjct: 617 LLHMLESPESLRSKVDEAVAVLQA 640
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 280/471 (59%), Gaps = 48/471 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI +VFVGHF ++QER + + N +VKNL TD DL++ F +G + SAVV
Sbjct: 227 MLIAGTEVFVGHFQKRQERPDI---EDWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVV 283
Query: 61 MRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQEL 114
M+D ++ FGFVN+E+AD A AVE L+GK F D E YVGKAQK++ERE+EL
Sbjct: 284 MKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTEREREL 343
Query: 115 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 174
+ +F+Q E ++K+QG+NLY+KNL D + DE+L+E F+ +GTITS +VMRD +G S+G
Sbjct: 344 RQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGF 403
Query: 175 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM-------RPV 227
GFV FSTPEEA+ A+AEMNGK+I KP+YVA AQRKE RRA+L+AQ +Q R +
Sbjct: 404 GFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRKEVRRAQLEAQHAQRATGVLVNRGM 463
Query: 228 AMGPSVPPRMPMYPPGPSGL----GQQFLY-GQAPPAIIPPQAGFGYQQQLVPGMRPAGA 282
MG PM+ P+ + Q ++Y Q P + P+ FG+ ++ PAG
Sbjct: 464 PMGQPPMYGAPMFYAQPNQMPMQGRQAYMYPQQMLPRGVHPRVPFGFGGRMPGAPGPAGF 523
Query: 283 PMPNFFVPVVSQGQQGQR-----PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR 337
M + +P+ Q Q + P G P ++ + R H R LG
Sbjct: 524 SMAGYGMPMQQQRQPRRGRQVPGPAGAPNGMPNRRN------FKYTTGARNHPSREGLGN 577
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
NM +G ++P G+ P G P S ALA ASPE Q+ ++GE
Sbjct: 578 NM--------SGGVMP----QGSSTPMG----GAPALEPLTSAALAAASPEAQKNMIGER 621
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LYPL+ + + + A K+TGMLLEMD +E+LHLLESP+AL +K+ EA++VL +
Sbjct: 622 LYPLIHRQQNELAGKITGMLLEMDNSELLHLLESPDALDSKIQEAIQVLEA 672
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 21/214 (9%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD S ++ L F +G I S V D G+SK +G+V++E
Sbjct: 153 QRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYVHYE 212
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A +A+ +NG E +VG QK+ ER D N Y+K
Sbjct: 213 TAEAATEAINKINGMLIAGTEVFVGHFQKRQERP---------------DIEDWTNCYVK 257
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 196
NL D L+ F FG + S VM+DP S ++G GFV + + A A+ ++GK
Sbjct: 258 NLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKT 317
Query: 197 I-----VSKPLYVAVAQRKEERRARLQAQFSQMR 225
V LYV AQ++ ER L+ +F Q++
Sbjct: 318 FKGVNGVDLELYVGKAQKRTERERELRQKFDQLK 351
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V ++ T+ L +IF G + S V RD +S + +VNF N DA +A++
Sbjct: 77 SLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAERALDT 136
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + +Q+ + G N+++KNL SID++ L
Sbjct: 137 MNFTCIKGVPCRIMWSQRDPSLRKSGVG----------------NIFVKNLDPSIDNKAL 180
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV DP+G SKG G+V + T E A+ A+ ++NG +I ++V Q
Sbjct: 181 YDTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQ 240
Query: 209 RKEER 213
+++ER
Sbjct: 241 KRQER 245
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 184
V FQ +LY+ ++ + + L E+F+ G + S +V RD + S G +V F +
Sbjct: 70 VQPFQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVD 129
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
A RAL MN I P + +QR R
Sbjct: 130 AERALDTMNFTCIKGVPCRIMWSQRDPSLR 159
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 200/504 (39%), Positives = 286/504 (56%), Gaps = 80/504 (15%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D++LK++F ++G S
Sbjct: 183 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSV 242
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 243 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 302
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 303 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 361
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 362 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 419
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 420 LSQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 462
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
RP G +G + P P + H + P G+A P R + +G+ + +D
Sbjct: 463 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDF 518
Query: 359 GA---------------GIP----------------------RRDASVGQPMPIT----- 376
G G+P + ASV P P
Sbjct: 519 GGAGAAQQGLTDSCQSGGVPAAVPSLAPRATVAAAPRAVAPYKYAASVRSPHPAIQPLQA 578
Query: 377 ------------ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 424
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E
Sbjct: 579 PQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSE 638
Query: 425 VLHLLESPEALKAKVAEAMEVLRS 448
+LH+LESPE+L++KV EA+ VL++
Sbjct: 639 LLHMLESPESLRSKVDEAVAVLQA 662
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 110 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 169 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD+ LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 219 NFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 278
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 279 SGKAIFVGRAQKKVERQAELKRKFEQLK 306
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 93
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 94 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 137
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 138 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 196
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 197 SRKEREAELGAK 208
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 199/490 (40%), Positives = 286/490 (58%), Gaps = 56/490 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E +DE L+++F +YG ITS
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ D A +A LNGK+ + + YVG+AQKK+ER++ELK +
Sbjct: 222 KVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG--- 230
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIF 400
Query: 231 ----------PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP--PQAGFGYQQQLVPGMR 278
P++PP Y P + A PA+ P A Y P M+
Sbjct: 401 QPGGTGGYFVPTIPPAQRFYGPAQMTQIRPSPRWTAQPAVRPNAQSAASAY-----PNMQ 455
Query: 279 PAGAPMPNFFVPVVSQGQQGQRP-GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR 337
P P P + G RP G++G + PI+P P G+ Y
Sbjct: 456 PPFRPAPRGPAQAALRSSMGARPITGQQGVATASSIRA--PIVPQSGRPAGYKYT----S 509
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
NM++ P P+ + P+T +T LA A ++Q+ +LGE
Sbjct: 510 NMRNPP------------------APQPAVHIQGQEPLT--TTMLAAAPLQEQKQMLGER 549
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
L+PL++++ D A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +Q
Sbjct: 550 LFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQQATK 609
Query: 458 ADQLASLSLN 467
D++A L +N
Sbjct: 610 KDEVA-LKIN 618
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K++E +NG + ++ YVG+ + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ DE L+E+F ++G ITS KVM G S+G GFVAF P+ A RA E+NGK +
Sbjct: 198 NFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKEL 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 258 VEGKPLYVGRAQKKAERQKELKRKFEQLK 286
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A+E
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKTIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 280/488 (57%), Gaps = 47/488 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 96 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 155
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 156 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 215
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 216 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 274
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KP YVA+AQRKEER+A L Q Q P P
Sbjct: 275 FSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRMASVQAVPNPVINP 334
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 335 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 393
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 394 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 446
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 447 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 498
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVA 450
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + A
Sbjct: 499 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 558
Query: 451 QQQANNPA 458
Q+ N+ A
Sbjct: 559 QKAVNSAA 566
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 23 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 81
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 82 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 131
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 132 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 191
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 192 NGKQIYVGRAQKKVERQTELKRKFEQMK 219
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 280/488 (57%), Gaps = 47/488 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 149
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 150 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 209
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 210 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 268
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KP YVA+AQRKEER+A L Q Q P P
Sbjct: 269 FSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRMASVQAVPNPVINP 328
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 329 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 387
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 388 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 440
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 441 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 492
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVA 450
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + A
Sbjct: 493 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAA 552
Query: 451 QQQANNPA 458
Q+ N+ A
Sbjct: 553 QKAVNSAA 560
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 17 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 75
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 76 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 125
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 126 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 185
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 186 NGKQIYVGRAQKKVERQTELKRKFEQMK 213
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 200/491 (40%), Positives = 280/491 (57%), Gaps = 70/491 (14%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD- 357
RP G +G + P P + H P R DF GAG+ D
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPALRHLAPTGSEC----PDRLAMDFG---GAGAAQQGLTDS 493
Query: 358 -MGAGIP-----------------------RRDASVGQPMPIT----------------A 377
G+P + +SV P P
Sbjct: 494 CQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAQPAVHVQGQEPL 553
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++
Sbjct: 554 TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRS 613
Query: 438 KVAEAMEVLRS 448
KV EA+ VL++
Sbjct: 614 KVDEAVAVLQA 624
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 190/382 (49%), Positives = 238/382 (62%), Gaps = 37/382 (9%)
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
A AVE +NG D YVG+AQKKSERE+EL+ +FEQ +K QG NLY+KNL DS
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+S PEEA RAL+EMNGKMI KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 203 YVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP-SGLG-----------QQ 250
Y+A+AQRKE+RRA LQA FSQ+R PGP SG Q
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIR---------------APGPMSGFHHPPGGPMPGPPQH 166
Query: 251 FLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGA 307
GQ +++P Q G+G+Q Q +PGMRP P NF V P+ Q Q G R G RRGA
Sbjct: 167 MYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGA 225
Query: 308 GPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 365
VQQ Q +M H+ P G Y GRN D G + + I +
Sbjct: 226 TNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQ 284
Query: 366 DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 425
A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+
Sbjct: 285 KAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEI 341
Query: 426 LHLLESPEALKAKVAEAMEVLR 447
LHL+ESPEALK+KV+EA++VLR
Sbjct: 342 LHLMESPEALKSKVSEALDVLR 363
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 14/131 (10%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+ D ++VG +K ERE ++ KF N+++KNLD+S DE LK++F
Sbjct: 13 LGDDVLYVGRAQKKSEREE-ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMF 71
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
EYG +TS+ VM + G S+ FGFV + N ++A +A+ +NGK + Y+ AQ+K +
Sbjct: 72 SEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 131
Query: 110 REQELKGQFEQ 120
R L+ F Q
Sbjct: 132 RRAHLQALFSQ 142
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 267/483 (55%), Gaps = 67/483 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E E LK IF E+G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVNF N DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 CVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLY+KNL DSIDDEKL++ F+ +GTITS KVM D G S+G GFV
Sbjct: 281 EQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R + GP++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRLASIRAIP-GPAIP 398
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
Q G GY VP +R +PN P
Sbjct: 399 TTY--------------------------QQGSGYYMTSVPQVRSFYNAVPN-LRPAPRW 431
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQM--PPRGHAYRYPLGRN---MQDFPFDMGAG 349
Q R +G P Q +Q +P P R + + P N M + G
Sbjct: 432 AFQAPRT---QGPFPAQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIGTQTAGG 488
Query: 350 SMLPVPV------DMGAGIPRRDASVGQPMPITA-----------------LSTALANAS 386
V AG+ + P P+ L+ ++ A+
Sbjct: 489 RAAGTAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAA 548
Query: 387 P-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
P ++Q+ LLGE LYPL++ L A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ V
Sbjct: 549 PLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAV 608
Query: 446 LRS 448
L++
Sbjct: 609 LQA 611
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KN+DES ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE E+ +A++ T N+YIKN G+ ID
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREAEMGA---KAVEFT-------NVYIKNFGEDID 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
EKLK +F+EFG S VM D G S+G GFV F +A RA+ EMNGK + + LYV
Sbjct: 204 SEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRLERQGELKRKFEQIK 284
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNYEVIKGRPIRIMWSQR 89
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 201/512 (39%), Positives = 288/512 (56%), Gaps = 95/512 (18%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 393
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ--- 294
S + QF P AG GY VP + P P ++ P ++Q
Sbjct: 394 -----ASAILNQF----------QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRP 433
Query: 295 ---GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
QQG RP G +G + P P + H + P G+A P R + +G+
Sbjct: 434 NPRWQQGGRPQGFQGMPSALRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECP 489
Query: 352 LPVPVDMG---------------AGIP-----------------------RRDASVGQPM 373
+ +D G G+P + +SV P
Sbjct: 490 DRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPH 549
Query: 374 PIT-----------------ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
P ++ LA A P++Q+ +LGE L+PL++ + + A K+TGM
Sbjct: 550 PAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 609
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 610 LLEIDNSELLHMLESPESLRSKVDEAVAVLQA 641
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD LKELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKAIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVMK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 207 AQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 173 FKSRKEREAELGAK 186
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 195/481 (40%), Positives = 274/481 (56%), Gaps = 50/481 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPA----------------------- 495
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
A + P + + V P+TA + LA+A P++Q+ +LGE L+PL+
Sbjct: 496 -----AAAAAATPAVRTVTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLI 548
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A A
Sbjct: 549 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSA 608
Query: 463 S 463
+
Sbjct: 609 T 609
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLHKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 201/486 (41%), Positives = 281/486 (57%), Gaps = 51/486 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 167 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 226
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 227 KVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRF 286
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 287 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 345
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 346 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 403
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ Q+ Y P P P + QQG
Sbjct: 404 INQFQPAA-GGYFM-----PAVPQAQSRPTY---YAPNQMAQMRPNPRW--------QQG 446
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG------HAYRYPLGRNM------- 339
RP G +G + P P + H P RG A G+N+
Sbjct: 447 GRPQGFQGMPSALRQSGPRPALRHLAPAGTAPVSRGLPVSAQRAGVTTAGQNLAPRPPVA 506
Query: 340 -----QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
P+ + P P P+ V P+TA + LA A P++Q+ +L
Sbjct: 507 APAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQML 564
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA
Sbjct: 565 GERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQA 621
Query: 455 NNPADQ 460
A Q
Sbjct: 622 KKEAAQ 627
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 94 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 152
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 153 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 202
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELFS++G S KVM DP+G SKG GFV+F E+A++A+ EMNGK I
Sbjct: 203 NFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDI 262
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 263 NGKMVFVGRAQKKVERQAELKRRFEQLK 290
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 201/512 (39%), Positives = 287/512 (56%), Gaps = 95/512 (18%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL+ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 393
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ--- 294
S + QF P AG GY VP + P P ++ P ++Q
Sbjct: 394 -----ASAILNQF----------QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRP 433
Query: 295 ---GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
QQG RP G +G + P P + H + P G+A P R + +G+
Sbjct: 434 NPRWQQGGRPQGFQGMPSALRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECP 489
Query: 352 LPVPVDMG---------------AGIP-----------------------RRDASVGQPM 373
+ +D G G+P + +SV P
Sbjct: 490 DRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPH 549
Query: 374 PIT-----------------ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGM 416
P ++ LA A P++Q+ +LGE L+PL++ + + A K+TGM
Sbjct: 550 PAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 609
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 610 LLEIDNSELLHMLESPESLRSKVDEAVAVLQA 641
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD LKELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKAIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVMK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 207 AQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 173 FKSRKEREAELGAK 186
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 203/489 (41%), Positives = 279/489 (57%), Gaps = 65/489 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----------------S 222
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILN 399
Query: 223 QMRPVAMG---PSVPP---RMPMYPPG------PSGLGQQFLYGQA----PPAIIPPQAG 266
Q +P A G P+VP R P Y P P+ QQ Q P AI
Sbjct: 400 QFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAI------ 453
Query: 267 FGYQQQLVPGMR---PAGAPMPNFFV---PVVSQGQQGQRPGGRRGAGPVQ-QTQQPLPI 319
Q P +R P G+ P+ QQG G + G P QT P
Sbjct: 454 --RQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAA 511
Query: 320 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 379
+ P Y+Y + P P P+ V P+TA
Sbjct: 512 VAAAAPRAVAPYKY-------------ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA-- 556
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 557 SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKV 616
Query: 440 AEAMEVLRS 448
EA+ VL++
Sbjct: 617 DEAVAVLQA 625
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 199/487 (40%), Positives = 276/487 (56%), Gaps = 44/487 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE L+++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKS+ FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-----------------QQLVPGMRPAG 281
PSG + A P AG Q Q + G+RP+G
Sbjct: 400 YQAAPPSGYFMAAIPQAQNRAAYYPAAGQMAQLRPGPRWTTQNVRPQHFQNMSGGIRPSG 459
Query: 282 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP---IMPHQMPPRGH-AYRYPLG- 336
P P F V Q + +R T P P P RG Y+Y G
Sbjct: 460 -PRPQTFSTVRPSSQVPRMMTTQRVGQSTDTTMGPRPATAAAAAATPVRGVPQYKYAAGV 518
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
RN Q +M V + GQ P+TA + LA A P++Q+ +LGE
Sbjct: 519 RNPQQHMNTQPQVTMQQPAVHVQ----------GQE-PLTA--SMLAAAPPQEQKQMLGE 565
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQ 451
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ
Sbjct: 566 RLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQ 625
Query: 452 QQANNPA 458
+ N A
Sbjct: 626 KTVTNSA 632
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDEKL+ELFS++G S +VM D +G S+G GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKLMYVGRAQKKVERQTELKRKFEQMK 284
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KGQ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 171 GRFKSRKEREAELGAR 186
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 203/489 (41%), Positives = 279/489 (57%), Gaps = 65/489 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----------------S 222
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILN 399
Query: 223 QMRPVAMG---PSVPP---RMPMYPPG------PSGLGQQFLYGQA----PPAIIPPQAG 266
Q +P A G P+VP R P Y P P+ QQ Q P AI
Sbjct: 400 QFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAI------ 453
Query: 267 FGYQQQLVPGMR---PAGAPMPNFFV---PVVSQGQQGQRPGGRRGAGPVQ-QTQQPLPI 319
Q P +R P G+ P+ QQG G + G P QT P
Sbjct: 454 --RQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAA 511
Query: 320 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 379
+ P Y+Y + P P P+ V P+TA
Sbjct: 512 VAAAAPRAVAPYKY-------------ASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA-- 556
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 557 SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKV 616
Query: 440 AEAMEVLRS 448
EA+ VL++
Sbjct: 617 DEAVAVLQA 625
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 201/506 (39%), Positives = 285/506 (56%), Gaps = 70/506 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVG + ++ER++ +K+ F N++VKNLD +E+ + +F ++G ITSA
Sbjct: 225 MLLNDKKVFVGQHISRKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSA 284
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ +D +G SK FGFVNFEN +DA +AVE L+ K+ + +VG+AQKKSERE+EL+ Q+
Sbjct: 285 VIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQY 344
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E K+QG NLYIKNL D +DDEKL+ F FGTITSCKVMRD G SKG GFV
Sbjct: 345 EQAKYEKAGKYQGSNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDEKGTSKGFGFVC 404
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP---VAMGPSVPP 235
FS+P+EA+RA++EMN K++ +KPLYVA+AQRK+ R+ +L++Q +Q +A + P
Sbjct: 405 FSSPDEATRAMSEMNNKIVGTKPLYVALAQRKDVRKQQLESQIAQRNNQLRLAAAQGI-P 463
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP---VV 292
MP YG AP P AG+ Q+ V G PA P + P +
Sbjct: 464 NMP--------------YGAAPMFYQPAAAGYPPGQRPVMGYPPAPGPARMRYAPGQQMA 509
Query: 293 SQGQQGQRPGGRRGAGPVQQTQQPLPI--------------MPHQMPPRGHAYRYPLGRN 338
G Q+P P+ +P PRG + G N
Sbjct: 510 GMAVPPPYGQPPVPYGMGTPYQRPRPVRQPGGPGGPGAPAPVPLSSAPRGPSAPVVTGGN 569
Query: 339 MQDFPFD------MGAGSMLPVPVDMGAGIPR--------------RDASVGQPMPITAL 378
P GAG+ P P G+P+ R+A+ +
Sbjct: 570 GTRLPMAGPGGPVTGAGAGRPAPTP--NGVPQNGGQAQAYKLNPNTRNATTTGQATTGPV 627
Query: 379 ST-------ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
ST LANAS +Q+ +LGE++Y + ++ + A K+TGMLLEM+ TE++HL+E+
Sbjct: 628 STEPPINAALLANASAGEQKQILGEAIYMKIHAMQPELAGKITGMLLEMETTELIHLIET 687
Query: 432 PEALKAKVAEAMEVL----RSVAQQQ 453
P+AL+ KVAEA+ VL ++ QQQ
Sbjct: 688 PDALQNKVAEAITVLEEFSKNAEQQQ 713
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 16/204 (7%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT N+F+KNLD+ ++ L F +GT+ S V D G SK +GFV++++ + A
Sbjct: 158 KTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEA 217
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
A++A+NG +D++ +VG+ + ER+ E+K F NLY+KNL
Sbjct: 218 AIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSHF-------------TNLYVKNLDT 264
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ +E+ + LFS+FG ITS + +D G SKG GFV F E+A RA+ E++ K I KP
Sbjct: 265 EVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKP 324
Query: 202 LYVAVAQRKEERRARLQAQFSQMR 225
++V AQ+K ER L+ Q+ Q +
Sbjct: 325 VFVGRAQKKSEREEELRKQYEQAK 348
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD T+ L +IF G + S V RD +S + +VN+ N +D +A++
Sbjct: 75 SLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQ 134
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + +Q+ + +G N++IKNL ID++ L
Sbjct: 135 LNYSQIRGKPCRIMWSQRDPGLRKTGQG----------------NIFIKNLDQGIDNKAL 178
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCKV D SG+SKG GFV + + E A A+ +NG ++ K ++V
Sbjct: 179 HDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHI 238
Query: 209 RKEERRARL 217
++ER++++
Sbjct: 239 SRKERQSKI 247
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALA 190
++LY+ L + + L E+F+ G + S +V RD + S G +V + + RAL
Sbjct: 74 VSLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALD 133
Query: 191 EMNGKMIVSKPLYVAVAQR 209
++N I KP + +QR
Sbjct: 134 QLNYSQIRGKPCRIMWSQR 152
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 202/472 (42%), Positives = 275/472 (58%), Gaps = 49/472 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
+I+ KQ++ G F+RK +R K+ N+++KNLD T+E L++ F E+G I S V+
Sbjct: 163 FIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVI 222
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+D +G S+ FGFVNFE+ +DA +A+EALNG + + YV +AQKK+EREQ L+ QFE+
Sbjct: 223 SKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEE 282
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
E + K++G N+Y+KN+ D+++D+ L+E FS G ITS K+MRD GISKG GFV FS
Sbjct: 283 KRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFS 342
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TP+EAS+A+ +G M KPLYVA+AQRKE+R+A+LQ ++Q GPS P Y
Sbjct: 343 TPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGY 402
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ----------QQLVPGMRPAGAPMPNFFVP 290
PP LY APP +IPP+ G YQ L+P RPA P +P
Sbjct: 403 PP---------LYYTAPPGVIPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQPSSIPLMP 453
Query: 291 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPR---------------GHAYRYPL 335
+ + R GR Q MPH P G A P
Sbjct: 454 NTPRQHRQNR--GRTNGHIPQGGGHSTAFMPHLQQPTQPVISPKDSINQQRAGQAKYVPN 511
Query: 336 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLG 395
GR+ ++M GS +P G S G M LS+ LA ASPEQQ+ +LG
Sbjct: 512 GRS-----YEMSKGSGIPSAASNSVGT----GSQGSEM----LSSMLAAASPEQQKQILG 558
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
E LYPLV++ + D AAK+TGMLLEMD +E+L LLESPE+L AKV EA++VL+
Sbjct: 559 EHLYPLVQKQKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLK 610
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 122/208 (58%), Gaps = 12/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ A ++ NVFVKNL +S + L+ +F ++G I S V+ DGKSK +GFV FE
Sbjct: 89 HRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFE 148
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ + A A+E LNG D ++ Y GK +K++R + K+ NLYIK
Sbjct: 149 SEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDR----------VLPNPDAKYT--NLYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + +E L+E F EFG I S + +D +G+S+G GFV F +PE+A RAL +NG +
Sbjct: 197 NLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER L+ QF + R
Sbjct: 257 GSKVLYVARAQKKAEREQLLRRQFEEKR 284
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L TD L F E+ ++ S + RD G+S C+G+VNF + DA+ A+EA
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + V + + + + G N+++KNL DSID+ +L
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDARRSGIG----------------NVFVKNLSDSIDNVRL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ +F +FG I SCKV+ G SKG GFV F + E A+ A+ ++NG +I K +Y
Sbjct: 117 QAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFV 176
Query: 209 RKEER 213
RK +R
Sbjct: 177 RKTDR 181
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I D L + FSEF ++ S ++ RD S G S G+V F +P++AS A+
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
N M+ K + V + R + R
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDAR 95
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 203/492 (41%), Positives = 283/492 (57%), Gaps = 67/492 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK+ F +YG S
Sbjct: 167 MLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSV 226
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 227 KVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRF 286
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 287 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 345
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR-- 236
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 346 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTL 403
Query: 237 MPMYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAG-APMP 285
+ + P P G F+ Q+ P P + Q+ PG RP G PMP
Sbjct: 404 INQFQPAPGGY---FVPAVPQTQSRPTYYAPN----HMAQIRPGPRWQQTGRPQGFQPMP 456
Query: 286 NFFV------------PVVSQGQQG-----QRPGGRRGAGPVQQTQQPLPIMPHQMPPRG 328
N P +QG +G QR G + P +PP
Sbjct: 457 NTLRQSGPRQSLRHMPPSNTQGTRGIPSVTQRVGVSSSTQTMGPRPPVSAPPPRAVPP-- 514
Query: 329 HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
Y+Y + P+P P+ V P+TA + LA+A P+
Sbjct: 515 --YKY----------------TRCPLPGVQPLQTPQPAVHVQGQEPLTA--SMLASAPPQ 554
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 555 EQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 614
Query: 449 VAQQQANNPADQ 460
QA A Q
Sbjct: 615 ---HQAKKDAAQ 623
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
ER+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 94 ERDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 152
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 153 TQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFT----------NVYIK 202
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE FS++G S KVM DPSG SKG GFV+F E+A++A+ +MNGK +
Sbjct: 203 NFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDV 262
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 263 NGKIMFVGRAQKKVERQAELKRRFEQLK 290
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 32/212 (15%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 78
T A +++V +L T+ L + F G + S V RD +S + +VNF+
Sbjct: 2 HTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 79 ADDAAK----------AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 128
D GK F W+ SER+ L+ K V
Sbjct: 62 PADGEYGNLLFDRMDVCFHVAGGKAFT-LLWF-------SERDPSLR-------KSGVG- 105
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 188
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA
Sbjct: 106 ----NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRA 160
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
+ +MNG ++ + ++V + + ER A L A+
Sbjct: 161 IEKMNGMLLNDRKVFVGRFKCRREREAELGAK 192
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 285/502 (56%), Gaps = 70/502 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV- 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + GP +
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLG 398
Query: 234 ---------------PPRMPMYPPGPSG---LGQQFLYGQA------PPA----IIPPQA 265
PP Y P P Q+ Q+ PPA +PP+
Sbjct: 399 SFQQPANYFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRR 458
Query: 266 GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP 325
+ M+ A +P V Q+ G + Q + MPH
Sbjct: 459 ----MSSNISTMKQASTQVPR----VAPHSQRVANIGTQTAGARAQVNPSIMRTMPH--- 507
Query: 326 PRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALAN 384
Y+Y RN+Q + ++ V M GQ P+TA ++LA+
Sbjct: 508 -----YKYSCAVRNVQPIGTNTHLQQVMEPAVLMQ----------GQE-PLTA--SSLAS 549
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+
Sbjct: 550 APPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVA 609
Query: 445 VLRSVAQQQANNPADQLASLSL 466
VL++ QA + + A SL
Sbjct: 610 VLQA---HQAKENSQKSAQQSL 628
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++L+E+FS FG S KVM D +G S+G GFV + EEA +A++EMNGK + + +YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRIERQGELKRKFEQIK 284
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL +SID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 197/489 (40%), Positives = 275/489 (56%), Gaps = 51/489 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE L+++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKS+ FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PSG + A P A G QL PG P + V
Sbjct: 400 YQAAPPSGYFMAAIPQAQNRAAYYPAA--GQMAQLRPG--------PRWTTQNVRPQHFQ 449
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
GG R +GP QT + P PR + + M P A + PV
Sbjct: 450 NMSGGIRPSGPRPQTFS--TVRPSSQVPRMMTTQRVGTQTMGPRPATAAAAAATPV---- 503
Query: 359 GAGIPRRDASVG----------QPM--------------PITALSTALANASPEQQRTLL 394
G+P+ + G QP P+TA + LA A P++Q+ +L
Sbjct: 504 -RGVPQYKYAAGVRNPQQHMNTQPQVTMQQPAVHVQGQEPLTA--SMLAAAPPQEQKQML 560
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSV 449
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL +
Sbjct: 561 GERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620
Query: 450 AQQQANNPA 458
AQ+ N A
Sbjct: 621 AQKTVTNSA 629
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDEKL+ELFS++G S +VM D +G S+G GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKLMYVGRAQKKVERQTELKRKFEQMK 284
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KGQ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 171 GRFKSRKEREAELGAR 186
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 273/472 (57%), Gaps = 40/472 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 129 MLLNDRKVFVGPFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSV 188
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 189 KVMTDESGKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKF 248
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 249 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 307
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L + Q P P
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNLYMQRMASVRAVPNPLINP 367
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPGMRPAGAP 283
P PS + Q A PP Q + Q +PG AP
Sbjct: 368 YQPAPPSAYFMAAIPQTQNRAAYYPPRQIAQLRPSPRWTAQGARPHPFQNMPGAIHPAAP 427
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 343
P F + Q + +R A QT+ P P A P R + +
Sbjct: 428 RPPFSTMRPASSQVPRVMSTQRVADTSTQTKGPRPAA-------AAAAATPAVRTVPQYK 480
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGE 396
+ +G + P P+ ++ QP P+TA + LA+A P++Q+ +LGE
Sbjct: 481 YAVGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGE 532
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 533 WLFPLIQAMHPSLAGKITGMLLEIDNSELLHILESPESLRSKVDEAVAVLQA 584
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 103/166 (62%), Gaps = 11/166 (6%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D +G K +GFV+FE + A +A+E +NG +DR+ +VG + + ERE EL + +
Sbjct: 98 VVCDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGARAK 156
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ N+YIKN G+ +DDE LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 157 EFT----------NVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ MNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERHEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 50/192 (26%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N FD +KG+ + M D
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDP-------------------- 91
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
++ V+ D +G KG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 92 --------SLRKSGVVCDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFK 142
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 143 SRKEREAELGAR 154
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 203/522 (38%), Positives = 287/522 (54%), Gaps = 85/522 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 157 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 216
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 217 KVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 276
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+IT +VM + G SKG GFV
Sbjct: 277 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVC 335
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 336 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 393
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 394 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 436
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM----------------QDF 342
RP G +G + P P + H + P G+A P R + DF
Sbjct: 437 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDF 492
Query: 343 PFDMGAGSMLPVPVDMGAGIP-----------------------RRDASVGQPMPIT--- 376
A L G G+P + +SV P P
Sbjct: 493 GGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIPPL 552
Query: 377 --------------ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
++ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D
Sbjct: 553 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 612
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
+E+LH+LESPE+L++KV EA+ VL++ A A Q+ +
Sbjct: 613 SELLHMLESPESLRSKVDEAVAVLQA---HHAKKEAAQMVGI 651
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 84 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 142
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 143 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 192
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 193 NFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEI 252
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 253 SGKVIFVGRAQKKVERQAELKRKFEQLK 280
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 96 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 154
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 155 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 189
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 152/259 (58%), Positives = 190/259 (73%), Gaps = 4/259 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M +NDKQV+VG F R+ ER + KFNNV+VKNL E+ +DE L++ F E+G +TS V+
Sbjct: 188 MELNDKQVYVGPFQRRAERSNTG-EAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVI 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +GKSK FGFV +E + AA AVE L+G D++ W V +AQKK+ERE ELK +F+Q
Sbjct: 247 MRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQ 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+E ++K G NLYIKNL D DDEKL+ELF EFGTITSC+VMRD SG+S+GS FVAFS
Sbjct: 307 ERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFS 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+P+EA+RA+ EMNGKM+ +KPLYVA+AQRKEERR RLQAQF+Q P G +P M Y
Sbjct: 367 SPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRMP---GAGMPGGMAPY 423
Query: 241 PPGPSGLGQQFLYGQAPPA 259
P P G YGQ PPA
Sbjct: 424 MPPPGVPGAPMYYGQPPPA 442
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 17/224 (7%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+IN K + V + +R+ ++ N+F+KNLD++ ++ L F ++GTITSA V
Sbjct: 102 VINGKPIRVLY----SQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVA 157
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
DG G SK +GFV FE + A A++ +NG + +D++ YVG Q+++ER + +F
Sbjct: 158 MDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFN-- 215
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
N+Y+KNL +++ DEKL+E F+E G +TSC +MRD G SKG GFV +
Sbjct: 216 -----------NVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEE 264
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
PE A+ A+ +++G K V AQ+K ER A L+A+F Q R
Sbjct: 265 PEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQER 308
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 19/198 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L+ S T+ L + F G + S V RD +S + +VNF++ +DAA A++
Sbjct: 37 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAID 96
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDE 146
LN + + + V L Q + A++ + G+ N++IKNL +ID++
Sbjct: 97 VLNFQVINGKPIRV------------LYSQRDPAVRRS-----GVGNIFIKNLDKAIDNK 139
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + F++FGTITS KV D G SKG GFV F T E A A+ +NG + K +YV
Sbjct: 140 ALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGP 199
Query: 207 AQRKEERRARLQAQFSQM 224
QR+ ER +A+F+ +
Sbjct: 200 FQRRAERSNTGEAKFNNV 217
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 66/81 (81%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+ L++ L+ A+P+QQR +LGE+LYPL+E + AAK+TGMLLEMDQ+EVLHL+ESP+
Sbjct: 492 PMAILASQLSAAAPDQQRMILGEALYPLIESKDAANAAKITGMLLEMDQSEVLHLIESPD 551
Query: 434 ALKAKVAEAMEVLRSVAQQQA 454
AL +KV EA+ VL++ A++ A
Sbjct: 552 ALTSKVQEALAVLKAAAEEGA 572
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 282/479 (58%), Gaps = 56/479 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E +DE L+++F +YG ITS
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ D A +A LNGK+ + + YVG+AQKK+ER++ELK +
Sbjct: 222 KVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG--- 230
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 341 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIF 400
Query: 231 ----------PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP--PQAGFGYQQQLVPGMR 278
P++PP Y P + A PA+ P A Y P M+
Sbjct: 401 QPGGTGGYFVPTIPPAQRFYGPAQMTQIRPSPRWTAQPAVRPNAQSAASAY-----PNMQ 455
Query: 279 PAGAPMPNFFVPVVSQGQQGQRP-GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR 337
P P P + G RP G++G + PI+P P G+ Y
Sbjct: 456 PPFRPAPRGPAQAALRSSMGARPITGQQGVATAASIRA--PIVPQSGRPAGYKYT----S 509
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
NM++ P P+ + P+T +T LA A ++Q+ +LGE
Sbjct: 510 NMRNPP------------------APQPAVHIQGQEPLT--TTMLAAAPLQEQKQMLGER 549
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQAN 455
L+PL++++ D A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ A+QQA
Sbjct: 550 LFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQQAT 608
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K++E +NG + ++ YVG+ + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ DE L+E+F ++G ITS KVM G S+G GFVAF P+ A RA E+NGK +
Sbjct: 198 NFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKEL 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 258 VEGKPLYVGRAQKKAERQKELKRKFEQLK 286
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A+E
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKTIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 205/483 (42%), Positives = 285/483 (59%), Gaps = 64/483 (13%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M++NDK+VFVG F+ K+ER E + + K F NVFVKN +S +E LK++FG++G ITS
Sbjct: 162 MMLNDKKVFVGEFMSKRERLEKLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSC 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVM + GKSK FGFV FE + A AV LNG + + R+ V +AQKK+ER ELK +F
Sbjct: 222 VVMAES-GKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKSRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E ++++QG+NLYIKNL D +DDE+L+ FS +GTITS KVM+D GISKG GFV
Sbjct: 281 EAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKDEKGISKGFGFVC 340
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG---- 230
FS+P+EA++A+ EMNG+++V+KPLYVA+AQRKEERRA+L QF Q +R A G
Sbjct: 341 FSSPDEATKAVTEMNGRILVTKPLYVALAQRKEERRAQLSTQFLQRVNPLRYNASGTMPQ 400
Query: 231 --------------PSVPP-RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG-YQQQLV 274
P+VP + P + + + QAP IP + + Q+
Sbjct: 401 AGYSFQAGQPGFYIPTVPTNQRPFITQSVNQITRPRWQSQAPVQQIPANTQYASHVTQIR 460
Query: 275 PGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ-------QTQQPLPIMPH--QMP 325
G P P P QG RR P Q Q +PI P+ +
Sbjct: 461 AGAAP---PRPR---------HQGAPNVARREPAPYQPGMGTRTMPSQQVPIRPNVPAVA 508
Query: 326 PRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALAN 384
+ AY+Y P RN +P AG M+ G P + A++ Q P ST LA
Sbjct: 509 QQRTAYKYNPNTRN--QYP----AGQMI--------GQPDQAAAIIQG-PDQLTSTILAT 553
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
A+P +Q+ ++GE L+PLV++ + A K+TGMLLE+D +E+LH+LES + L+AKV EA++
Sbjct: 554 ATPTEQKQMIGERLFPLVQEFQPHLAGKITGMLLEIDNSELLHMLESRDLLRAKVEEAVQ 613
Query: 445 VLR 447
VL+
Sbjct: 614 VLQ 616
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 11/204 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD++ ++ L F +G I S + D S+ +GFV++E
Sbjct: 88 QRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKNVSRGYGFVHYE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+ +NG +D++ +VG+ K ER ++L Q KF+ N+++K
Sbjct: 148 TKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQ--------AKKFK--NVFVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GDS+D+EKLKE+F + G ITSC VM + SG SKG GFVAF PE A A+ E+NG I
Sbjct: 198 NFGDSLDEEKLKEMFGKHGEITSCVVMAE-SGKSKGFGFVAFEAPEAAEAAVNELNGLEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
+ L V AQ+K ER L+++F
Sbjct: 257 EGRKLVVCRAQKKAERTMELKSRF 280
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 17/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ T+ L + F + G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAIDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ L
Sbjct: 72 MNYDPIKGRPCRIMWSQRDPTLRRSGVG----------------NIFIKNLDKNIDNKGL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D +S+G GFV + T E A A+A++NG M+ K ++V
Sbjct: 116 YDAFSAFGNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFM 175
Query: 209 RKEERRARLQAQFSQMRPV 227
K ER +L Q + + V
Sbjct: 176 SKRERLEKLGDQAKKFKNV 194
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 180
M+ T + +LY+ +L + + L E FS+ G + S +V RD + S G +V F
Sbjct: 1 MQSTTQNYPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P +A RA+ MN I +P + +QR
Sbjct: 61 QPADAERAIDTMNYDPIKGRPCRIMWSQR 89
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 201/486 (41%), Positives = 280/486 (57%), Gaps = 51/486 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRALPANTI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ Q+ Y P P P + QQG
Sbjct: 398 INQFQPAA-GGYFM-----PAVPQAQSRPTY---YAPNQMAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMP------PRG---HAYRYPLGRNMQDF------- 342
RP G +G + P P + H P RG A R + Q
Sbjct: 441 GRPQGFQGMPNAMRQSGPRPALRHLAPAGTAPASRGLPVSAQRVGVTTAGQSLAPRPPVA 500
Query: 343 --------PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
P+ + P P P+ V P+TA + LA A P++Q+ +L
Sbjct: 501 APAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQML 558
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
GE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ QA
Sbjct: 559 GERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA---HQA 615
Query: 455 NNPADQ 460
A Q
Sbjct: 616 KKEAAQ 621
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELFS++G S KVM DP+G SKG GFV+F E+A++A+ EMNGK I
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKMVFVGRAQKKVERQAELKRRFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 203/495 (41%), Positives = 281/495 (56%), Gaps = 57/495 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK+ FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F+ FG+ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPP-----AIIPPQAGFGYQQQLVP-------GMRP------A 280
Y P PS + PP A PP G QL P G RP A
Sbjct: 398 PYQPPPSS----YFMAAIPPAQNRAAYYPP----GQIAQLRPSPRWTAQGARPHPFQNMA 449
Query: 281 G-----APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH----AY 331
G AP P F + Q + +R A QT P P Y
Sbjct: 450 GAIRPSAPRPPTFSTMRPTSQVPRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQY 509
Query: 332 RYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
+Y G RN Q +M V + GQ P+TA + LA A P++Q
Sbjct: 510 KYAAGVRNTQQHLNTQPQVAMQQPAVHVQ----------GQE-PLTA--SMLAAAPPQEQ 556
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 557 KQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA-- 614
Query: 451 QQQANNPADQLASLS 465
QA A ++ S +
Sbjct: 615 -HQAKEAAQKVVSAT 628
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE F ++G S KVM D G S+G GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 198/493 (40%), Positives = 279/493 (56%), Gaps = 52/493 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ F +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV- 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + GP +
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLG 398
Query: 234 ---------------PPRMPMYPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLV 274
PP Y P P Q + PP PP Q
Sbjct: 399 SFQQPANYFLSAMPQPPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRR 458
Query: 275 PGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 334
+ + VP V+Q Q G + AG Q P M MP Y+Y
Sbjct: 459 MSSNISTMKQASTQVPRVAQHSQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYS 511
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN+Q ++ V M GQ P+TA + LA A P++Q+ +
Sbjct: 512 CGVRNVQPIVSSTHLQQVMEPAVLMQ----------GQE-PLTA--SLLAGAPPQEQKQM 558
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE +YP++ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ Q
Sbjct: 559 LGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQ 615
Query: 454 ANNPADQLASLSL 466
A A + A SL
Sbjct: 616 AKENAQKSAQPSL 628
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++L+E+FS FG S KVM D SG S+G GFV + EEA +A++EMNGK + + +YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F Q++
Sbjct: 264 GRAQKRIERQSELKRKFEQIK 284
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL +SID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 265/470 (56%), Gaps = 49/470 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER + ++ +F NV++KN+D TD + + + +G S
Sbjct: 197 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISV 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD G SK FGFVN+EN + A KAV+ LN K+ + ++ Y G+AQ KSERE ELK
Sbjct: 257 ALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSH 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLY+KNL D DD++L+ F FGTITS KVMRD SG+S+G GFV
Sbjct: 317 EEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+P+EA++A++EMNGKMI +KPLYVA+AQRK+ RR L++Q +Q M +
Sbjct: 377 YSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRM------QYG 430
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG G Q +YG PP G+G Q +PGM P PM + P Q
Sbjct: 431 AGFPGMQGYMGQPMYG------YPPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQ 479
Query: 299 QRPGGRRGAGPVQQTQQPLP--IMPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAG 349
RP QPLP + + MPP+ G+ R P G + P G
Sbjct: 480 SRPR-------FNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPR 531
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGE 396
+ P PV G+P G MP A LA A+P +Q+ +LGE
Sbjct: 532 NGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGE 591
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 592 ALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+S ++ L F +G I S V D +GKS+ F FV++
Sbjct: 123 QRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYS 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER---EQELKGQFEQAMKETVDKFQGLNL 134
+ A A++A+NG +D++ YVG K ER +EL+ QF N+
Sbjct: 183 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF-------------TNV 229
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D + ++L FG S + RD G+SKG GFV + E A +A+ E+N
Sbjct: 230 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNE 289
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + K LY AQ K ER A L+ + R
Sbjct: 290 KEVNGKKLYAGRAQTKSEREAELKKSHEEKR 320
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN K + + + Q + A+++T QG N++IKNL SID++ L
Sbjct: 107 LNYSLI------------KGQSCRIMWSQRDPALRKT---GQG-NIFIKNLDQSIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ L+AQF+ +
Sbjct: 211 GKKERLSKVEELRAQFTNV 229
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 197/506 (38%), Positives = 289/506 (57%), Gaps = 70/506 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ + +RE + + K + NV++KN+DE+ +++L ++F +YGTITS
Sbjct: 467 MLLNGKKVFVGRFVGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSC 526
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ +A KAV L+GKK + + +YV +AQKK+ER+QELK +
Sbjct: 527 KVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRK 586
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L+ FS FGTI S KVM D G SKG GFV
Sbjct: 587 FEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFV 645
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ +MNG+++ +KPLYV +AQRK++R+A L +Q+SQ MR ++G
Sbjct: 646 YFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRMQSIG--- 702
Query: 234 PPRMPMYPPGPSG------LGQ-QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP-MP 285
P+Y PG S + Q Q+ YG I Q + +Q Q+ G AP P
Sbjct: 703 ----PIYQPGASNGYFVPTIPQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQTAAPGYP 758
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGP----VQQTQQPLPIMPHQMP--------------PR 327
N + G + P G++ A V +P+ +MP
Sbjct: 759 NMATQHQNIGARAPVPAGQQAALARNVMVDTNARPISTAQQKMPGAVSAGSVHVPGARDT 818
Query: 328 GHAYRY-PLGRNMQDFPFDMGAGSMLPVPVD-MGAGIPRRDASVGQPM------------ 373
G Y+Y P RN D G G P MG P + +GQ
Sbjct: 819 GSGYKYTPNMRN--PLSQDQGIGQAQPGQAQGMGQSQPGQAQGMGQAQSGQAQGMEQVQP 876
Query: 374 -----------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
P+TA T LA A PE Q+ +LGE L+PL+E++ + K+TGMLLE+D
Sbjct: 877 DKAAVHVYGQEPLTA--TMLATAKPEDQKQMLGERLFPLIERMYPELTGKITGMLLEIDN 934
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRS 448
+++LH+LE E+LK +V +A+ +L++
Sbjct: 935 SDLLHMLEHHESLKNQVEKAVAMLQA 960
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 107/167 (64%), Gaps = 11/167 (6%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V +D G SK +GFV+FE A +++E +NG + ++ +VG+ +++RE+EL GQ
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKEL-GQ-- 491
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
QA T N+YIKN+ +++++++L E+F ++GTITSCKVM G S+G GFVAF
Sbjct: 492 QAKLYT-------NVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAF 544
Query: 180 STPEEASRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 225
P+EA +A+ E++GK K YV AQ+K ER+ L+ +F Q +
Sbjct: 545 EDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYK 591
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 202/495 (40%), Positives = 283/495 (57%), Gaps = 60/495 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E D LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G SK FGFVNFE +DA KAVE +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G +KG GFV
Sbjct: 281 EQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRNKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLY+A+AQRKEER+A L Q+ Q +R V + P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRMASIRAVPNPVLNP 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPM 284
PP P + Y + A + P + Q Q L +RPA A
Sbjct: 400 YQPPSGYFMTAIPQTQNRPAYYPASQMAPLRPSPRWTSQGARPHPFQNLPGAIRPA-ASR 458
Query: 285 PNF--FVPVVSQGQQGQRPGGRRGAGPVQQ----TQQPLPIMPHQMPPR--------GHA 330
P F P+ SQ RG G Q+ + Q L + P G
Sbjct: 459 PPFGSMRPMSSQ---------LRGVGASQRIANSSTQALGLPPGASAGAAGAPGVRMGPQ 509
Query: 331 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
Y+Y G RN Q V + A + + V P+TA + LA A P++
Sbjct: 510 YKYAAGVRNPQQH-----------VNIQPQARVQQPAVHVQGQEPLTA--SMLAAAPPQE 556
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL--- 446
Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL
Sbjct: 557 QKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 616
Query: 447 --RSVAQQQANNPAD 459
+ AQ+ N AD
Sbjct: 617 QAKEAAQKAVKNAAD 631
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD +LK LF +FG S KVM D SG SKG GFV F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 257 NGKKIYVGRAQKKGERQTELKRKFEQLK 284
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L ++ L + F G I S V RD +S + +VNF+ DA +A+E
Sbjct: 12 SLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALET 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G SKG GFV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 FDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 198/488 (40%), Positives = 274/488 (56%), Gaps = 63/488 (12%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL----------------QAQFS 222
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L A +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILN 399
Query: 223 QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA 282
Q +P A G VP P G+ PP P Q Q+ P R
Sbjct: 400 QFQPAAGGYFVPAV-------PQAQGR-------PPYYTPNQLA-----QMRPNPRWQQG 440
Query: 283 PMPNFFVPVVSQ-GQQGQRPGGRR-----------------GAGPVQQ----TQQPLPIM 320
P F + S Q G RP R GAG QQ + Q +
Sbjct: 441 GRPQGFQGMPSALRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGV- 499
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 380
P +P P+ + P P P+ V P+TA +
Sbjct: 500 PTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--S 557
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 558 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 617
Query: 441 EAMEVLRS 448
EA+ VL++
Sbjct: 618 EAVAVLQA 625
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 197/505 (39%), Positives = 287/505 (56%), Gaps = 81/505 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
RP G +G + P P + H + P G+A P R + +G+ + +D
Sbjct: 441 GRPQGFQGMPSALRQSGPRPALRH-LAPTGNA---PASRGLPTTAQRVGSECPDRLAMDF 496
Query: 359 G---------------AGIP-----------------------RRDASVGQPMPITA--- 377
G G+P + ++V P P
Sbjct: 497 GGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQ 556
Query: 378 -------------LSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 423
L+ ++ A+P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D +
Sbjct: 557 APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS 616
Query: 424 EVLHLLESPEALKAKVAEAMEVLRS 448
E+LH+LESPE+L++KV EA+ VL++
Sbjct: 617 ELLHMLESPESLRSKVDEAVAVLQA 641
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 196/479 (40%), Positives = 278/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V VG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 116 MLLNDRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 175
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 176 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 235
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 236 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 294
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ MNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 295 FSSPEEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 354
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 355 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 413
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 414 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 466
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 467 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 518
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 519 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 577
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 50 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 109 AIEKMNGMLLNDRKVSVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 158
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 159 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 219 GRAQKKVERQTELKRKFEQMK 239
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 25/158 (15%)
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
+S + +VNF+ DA +A++ +N FD +KG+ + M
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN---FD-----------------VIKGKPVRIMWSQR 44
Query: 127 D---KFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
D + G+ N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T
Sbjct: 45 DPPLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 103
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
E A RA+ +MNG ++ + + V + ++ER A L A+
Sbjct: 104 EAAERAIEKMNGMLLNDRKVSVGRFKSRKEREAELGAR 141
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 206/511 (40%), Positives = 273/511 (53%), Gaps = 94/511 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +NDK VFVG + ++ER+ ++ F N+++KNL T E+L ++F +YG +TSA
Sbjct: 208 MQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSA 267
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V D GK + FGFVN+EN + A+KAVEAL+ K + YV +AQK+ ER+ EL+
Sbjct: 268 AVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAH 327
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ET K+QG+NLYIKNL D DDEKL+ F FGTITSCKVM+D G+S+G GFV
Sbjct: 328 EQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVC 387
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ---MRPVAMGPSVPP 235
FS P+EA++A+AEMNGKM+ SKPLYV++AQRK+ R+ +L+AQ SQ MR + + P
Sbjct: 388 FSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVRKQQLEAQMSQRAQMRSQQIAAAGIP 447
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
P P Q YG A A PP G Y P PAG P
Sbjct: 448 GAPYGAPP-----NQMYYGGAA-AYPPPGRGMAYP----PNGMPAGMP------------ 485
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM---QDFPFDMG----- 347
RP R A P Q +P PH PP+G+ YP G D + G
Sbjct: 486 ---PRP---RYAPPGQMPPMGMPGAPHYQPPQGYP-GYPAGDPAFPGADHAYPAGDPGYP 538
Query: 348 ------AGSM------------------------------LPVPVDMGAGIPR-RDASVG 370
AGSM +P M P+ RD +
Sbjct: 539 AGGPAPAGSMRGMPGPPGGPAPAGFRGPGGPNGPPIGRNGMPPAGGMRGAPPQSRDPAYH 598
Query: 371 QP--------------MPITALS-TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
QP P T LS ALA ASP +Q+ +LGE+LYP + + + + A K+TG
Sbjct: 599 QPSTLSGRATSHRAPEAPQTGLSPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITG 658
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
M+LE+D E+LHLLE+ AL AKV+EA++VL
Sbjct: 659 MILEIDNAELLHLLENTTALDAKVSEAVQVL 689
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE+ ++ L F +G I S V D G SK +GFV++
Sbjct: 134 QRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFVHYV 193
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG + +D+ +VG + ER+ E++ F NL
Sbjct: 194 TAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHF-------------TNL 240
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL + E+L E+FS++G +TS V D SG +G GFV + E AS+A+ ++
Sbjct: 241 YIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHD 300
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYVA AQ++ ER A L+ Q +
Sbjct: 301 KDYKGNILYVARAQKRVERDAELRRAHEQQK 331
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 20/200 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
+++V LD + T+ L +IF G ++S V RD +S + +VN+ NA DA +A+E
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN ++ + +Q+ + +G N++IKNL ++ID++
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQG----------------NIFIKNLDETIDNKA 160
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + F+ FG I SCKV D +G SKG GFV + T E A A+ +NG + K ++V +
Sbjct: 161 LHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIH 220
Query: 208 QRKEERRARL---QAQFSQM 224
+ ER+A++ +A F+ +
Sbjct: 221 VPRRERQAKIDEVRAHFTNL 240
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 277/479 (57%), Gaps = 45/479 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM+D +G S+ FGFVNFE ++A KAV +NGK+ R+ YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG++I +KPLYVA+AQRKEERRA L Q+ S MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERRAILSNQYMQRLSTMRALGVPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
S P P P + YG A I P + Q RP+ A M
Sbjct: 400 SQQPTSYFLPAMPQPPARAAYYGSGSVATIQPAPRWAAQPP-----RPSCASMV------ 448
Query: 292 VSQGQQGQRPGG--RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP-LGRNMQDFPFDMGA 348
RP RR + +Q +PH +P H R +G G
Sbjct: 449 --------RPPATPRRPLAQLSTVRQASTQVPHPVP---HTQRVANIGTQTTGPGGAEGC 497
Query: 349 GS-MLPVPVDMGAGIPRRDASVGQPM----PITALSTALANASPEQQRTLLGESLYPLVE 403
S L +P + + PM P+TA + LA A P +Q+ ++GE LYPL+
Sbjct: 498 TSGQLLLPYRHSSAAHNVHRVLESPMHRQEPLTA--SMLAAALPHEQKQMIGERLYPLIY 555
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP-ADQL 461
+ A K+TGMLLE+D +E+L +LESPE+L+AK+ EA+ VL+ A Q +P AD L
Sbjct: 556 GVYPHLAGKITGMLLEIDNSELLLMLESPESLQAKIEEAVAVLQ--AHQAMEHPRADLL 612
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL+ +AM+ T N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREAELRA---RAMEFT-------NIYVKNLQVDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVM+D +G S+G GFV F EEA +A+ +MNGK + + LYV
Sbjct: 204 EQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRKFEQMK 284
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + +KGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A++ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L+A+
Sbjct: 171 GHFKSRREREAELRAR 186
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 197/506 (38%), Positives = 289/506 (57%), Gaps = 70/506 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ + +RE + + K + NV++KN+DE+ +++L ++F +YGTITS
Sbjct: 153 MLLNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSC 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ +A KAV L+GKK + + +YV +AQKK+ER+QELK +
Sbjct: 213 KVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L+ FS FGTI S KVM D G SKG GFV
Sbjct: 273 FEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ +MNG+++ +KPLYV +AQRK++R+A L +Q+SQ MR ++G
Sbjct: 332 YFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQRNTNMRMQSIG--- 388
Query: 234 PPRMPMYPPGPSG------LGQ-QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP-MP 285
P+Y PG S + Q Q+ YG I Q + +Q Q+ G AP P
Sbjct: 389 ----PIYQPGASNGYFVPTIPQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQTAAPGYP 444
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGP----VQQTQQPLPIMPHQMP--------------PR 327
N + G + P G++ A V +P+ +MP
Sbjct: 445 NMATQHQNIGARAPVPAGQQAALARNVMVDTNARPISTAQQKMPGAVSAGSVHVPGARDT 504
Query: 328 GHAYRY-PLGRNMQDFPFDMGAGSMLPVPVD-MGAGIPRRDASVGQPM------------ 373
G Y+Y P RN D G G P MG P + +GQ
Sbjct: 505 GSGYKYTPNMRN--PLSQDQGIGQAQPGQAQGMGQSQPGQAQGMGQAQSGQAQGMEQVQP 562
Query: 374 -----------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
P+TA T LA A PE Q+ +LGE L+PL+E++ + K+TGMLLE+D
Sbjct: 563 DKAAVHVYGQEPLTA--TMLATAKPEDQKQMLGERLFPLIERMYPELTGKITGMLLEIDN 620
Query: 423 TEVLHLLESPEALKAKVAEAMEVLRS 448
+++LH+LE E+LK +V +A+ +L++
Sbjct: 621 SDLLHMLEHHESLKNQVEKAVAMLQA 646
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 132/221 (59%), Gaps = 13/221 (5%)
Query: 8 VFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
+ GH +R +R+ K+ NVF+KNLD S ++ + F +G I S V +D
Sbjct: 67 ILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDET 126
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G SK +GFV+FE A +++E +NG + ++ +VG+ +++RE+EL GQ +
Sbjct: 127 GNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKEL-GQRAKLY--- 182
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
N+YIKN+ +++++++L E+F ++GTITSCKVM G S+G GFVAF P+EA
Sbjct: 183 ------TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEA 236
Query: 186 SRALAEMNGKMI-VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+A+ E++GK K YV AQ+K ER+ L+ +F Q +
Sbjct: 237 EKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYK 277
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 25/193 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V R +S + +VNF+N DA +A++
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD LKG + M D + G+ N++IKNL SID
Sbjct: 63 MN---FDI-----------------LKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSID 102
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ + + FS FG I SCKV +D +G SKG GFV F T + A++++ ++NG ++ K ++V
Sbjct: 103 NKAMYDTFSAFGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFV 162
Query: 205 AVAQRKEERRARL 217
+ +R L
Sbjct: 163 GRFVGRNDREKEL 175
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 265/470 (56%), Gaps = 49/470 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER + ++ +F NV++KN+D TD + + + +G S
Sbjct: 199 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISV 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD G SK FGFVN+EN + A +AV+ LN K+ + ++ Y G+AQ KSERE ELK
Sbjct: 259 ALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSH 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLYIKNL D DD++L+ F FGTITS KVMRD SG+S+G GFV
Sbjct: 319 EEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+P+EA++A++EMNGKMI +KPLYVA+AQRK+ RR L++Q +Q M +
Sbjct: 379 YSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRM------QYG 432
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG G Q +YG PP G+G Q +PGM P PM + P Q
Sbjct: 433 AGFPGMQGYMGQPMYG------YPPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQ 481
Query: 299 QRPGGRRGAGPVQQTQQPLP--IMPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAG 349
RP QPLP + + MPP+ G+ R P G + P G
Sbjct: 482 SRP-------RFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPR 533
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGE 396
+ P PV G+P G MP A LA A+P +Q+ +LGE
Sbjct: 534 NGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGE 593
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 594 ALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 643
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+S ++ L F +G I S V D +GKS+ F FV++
Sbjct: 125 QRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYS 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER---EQELKGQFEQAMKETVDKFQGLNL 134
+ A A++A+NG +D++ YVG K ER +EL+ QF N+
Sbjct: 185 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF-------------TNV 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D + ++L FG S + RD G+SKG GFV + E A +A+ E+N
Sbjct: 232 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNE 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I K LY AQ K ER A L+ + R
Sbjct: 292 KEINGKKLYAGRAQTKSEREAELKKSHEEKR 322
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL SID++ L
Sbjct: 109 LNYSLIKGQSCRIMWSQR------------DPALRKT---GQG-NIFIKNLDQSIDNKAL 152
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 153 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 212
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ L+AQF+ +
Sbjct: 213 GKKERLSKVEELRAQFTNV 231
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 214/557 (38%), Positives = 287/557 (51%), Gaps = 123/557 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D TDE+ +++FG++G ITSA
Sbjct: 201 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSA 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + ++A AV+ LN K F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 261 TISRDDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-------- 170
E A E K+QG+NLY+KNL D +DDEKL+ELFS FGTITS KVMRD G
Sbjct: 321 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEE 380
Query: 171 --------------------------------------SKGSGFVAFSTPEEASRALAEM 192
SKG GFV FS+P+EAS+A+ EM
Sbjct: 381 TKESSEEVEEPKEEETNAKTEDEDKTDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEM 440
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLG 248
N +M+ KPLYVA+AQRK+ R+++L+A + + P+ M P G G
Sbjct: 441 NQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPG 500
Query: 249 QQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------ 301
QQ FL G A Q G + Q PGM AG P G+ GQ P
Sbjct: 501 QQGFLPGNA------GQRGMAFAPQ--PGMVMAGIP----------GGRPGQYPGGFPQQ 542
Query: 302 GGRRGAGPVQQTQ---QPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLPVPV 356
GGR AGP Q Q Q +PI Q P G + YP M F GAG VP
Sbjct: 543 GGRGIAGPNQIPQNFGQGIPIGAMQAGPGGIPNGMAYP---QMAQVQFGRGAGGRGQVP- 598
Query: 357 DMGAGIP----------------------------RRDASVGQP-----MPITALSTALA 383
GIP ++ G P P T AL
Sbjct: 599 ---QGIPPNVGGPRGGPGFGQGRGGMPPRPGPGGRGQNVPAGAPAAPEGTPGTLTLQALT 655
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
A P+QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L L++ AL+AKV EA+
Sbjct: 656 AAPPQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLIDDESALRAKVDEAL 715
Query: 444 EVLRSVAQQQANN-PAD 459
V + + ++ PAD
Sbjct: 716 HVYDEYMKNKGSDEPAD 732
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 127 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 186
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 187 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 233
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ +ELF +FG ITS + RD SG S+G GFV + E A A+ ++N
Sbjct: 234 YVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLND 293
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q+ R
Sbjct: 294 KDFHGQKLYVGRAQKKHEREEELRRQYEAAR 324
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 111 LNYTLIKGRPCRIMWSQR 128
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 206/547 (37%), Positives = 282/547 (51%), Gaps = 114/547 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D DE+ +K+F ++G ITSA
Sbjct: 193 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 253 TLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------------ 166
E A E K+QG+NLY+KNL D +DD+KL+ELF +GTITS KVMRD
Sbjct: 313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESE 372
Query: 167 ---------------------------------------PSGISKGSGFVAFSTPEEASR 187
P G SKG GFV FS+P+EAS+
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASK 432
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--------------AMGPSV 233
A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + M P+V
Sbjct: 433 AVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV 492
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
Y PG G F+ G + PPQ G PG P P P
Sbjct: 493 -----FYGPGQQG----FIPGAQRGGMFPPQPGMMMGMPGRPGQYP--GPFP-------- 533
Query: 294 QGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMPPRGHAYRYPL--------------- 335
GQQG RG GP QQ Q LP+ Q P + YP+
Sbjct: 534 -GQQGG-----RGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVP 587
Query: 336 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQR 391
G G +P+ M G R +VGQP P T + + AL+ A P+QQ+
Sbjct: 588 GMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V +
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMK 707
Query: 452 QQANNPA 458
+++ PA
Sbjct: 708 NKSDEPA 714
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 179 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNI 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ ++DE+ ++LF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 286 KEVRSQKLYVGRAQKKHEREEELRKQYEAAR 316
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183
T + +LY+ L S+ + L ELFS G + S +V RD + S G +V ++
Sbjct: 35 TTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTA 94
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQR 209
RAL E+N +I KP + +QR
Sbjct: 95 HGERALDELNYTLIKGKPCRIMWSQR 120
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 197/484 (40%), Positives = 274/484 (56%), Gaps = 48/484 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK+IF ++G TS
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G + FGFV+FEN +DA KAV+ +NGK+ + R +VG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL D IDDE+L++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q A + P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLITQYMQRVANARAAANPVMNP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPPQAGFGYQQQLVPG-------------------MR 278
P PSG + Q+ A P G QL PG MR
Sbjct: 400 YQPAPPSGFIMTAIPQAQSRSAYYPTA---GQMAQLRPGPRWTTQSVRPQHFQNMPGVMR 456
Query: 279 PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG-R 337
P P P F V + Q +R A + P+ + G Y+Y G R
Sbjct: 457 PP-RPRPQNFSTVRASSQVPPMMNTQRVAAQSSGPRHPVATAATHVRG-GPQYKYSTGVR 514
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
N Q ++ P + P+TA + LA A ++Q+ +LGE
Sbjct: 515 NPQQHVATQPQVTLQPA------------VHIQGQEPLTA--SMLAAAPLQEQKQMLGER 560
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQ 452
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + VAQ+
Sbjct: 561 LFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEVAQK 620
Query: 453 QANN 456
A N
Sbjct: 621 PATN 624
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G S+ +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + + N+YIK
Sbjct: 147 THDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKE+FS+FG TS +VM D SG +G GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGRIMFVGRAQKKMERQMELKRRFEQMK 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +P+ + +QR
Sbjct: 72 MNFDVIKGQPVRIMWSQR 89
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 276/467 (59%), Gaps = 70/467 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++F +YG S
Sbjct: 148 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSI 207
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + R+ YVG+AQKK ER+ ELK +F
Sbjct: 208 RVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKF 267
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 268 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 326
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A +VP P
Sbjct: 327 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY--MQRMATVRAVPN--P 382
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P Y APP+ +F+ + Q Q
Sbjct: 383 VLNP----------YQPAPPS--------------------------GYFMAAIPQTQ-- 404
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPR--GHAYRYPLG-RNMQDFPFDMGAGSMLPVP 355
R Q Q P P R H+Y+Y G RN Q S V
Sbjct: 405 ----NRAAYYSANQLAQLRP-SPRWNDSRECAHSYKYAAGVRNPQQH-----MASQPQVA 454
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+ A + + GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 455 MQQPAVLVQ-----GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKITG 506
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV----AQQQANNPA 458
MLLE+D +E+LH+LESPE+L++K+ EA+ VL++ A Q++ PA
Sbjct: 507 MLLEIDNSELLHMLESPESLRSKMDEAVAVLQAHQAKEAAQKSTTPA 553
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 75 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 133
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + + N+YIK
Sbjct: 134 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFT----------NVYIK 183
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKELFS++G S +VM D SG SKG GFV+F E+A +A+ +MNGK +
Sbjct: 184 NFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKEL 243
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER+ L+ +F QM+
Sbjct: 244 NGRQVYVGRAQKKGERQNELKRKFEQMK 271
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 265/470 (56%), Gaps = 49/470 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER + ++ +F NV++KN+D TD + + + +G S
Sbjct: 199 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISV 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD G SK FGFVN+E+ + A KAV+ LN K+ + ++ Y G+AQ KSERE ELK
Sbjct: 259 ALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSH 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLYIKNL D DD++L+ F FGTITS KVMRD SG+S+G GFV
Sbjct: 319 EEKRLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+P+EA++A++EMNGKMI +KPLYVA+AQRK+ RR L++Q +Q M +
Sbjct: 379 YSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRM------QYG 432
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG G Q +YG PP G+G Q +PGM P PM + P Q
Sbjct: 433 TGFPGMQGYMGQPMYG------YPPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQ 481
Query: 299 QRPGGRRGAGPVQQTQQPLP--IMPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAG 349
RP QPLP + + MPP+ G+ R P G + P G
Sbjct: 482 SRP-------RFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPR 533
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGE 396
+ P PV G+P G MP A LA A+P +Q+ +LGE
Sbjct: 534 NGGPSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGE 593
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 594 ALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 643
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+S ++ L F +G I S V D +GKS+ F FV++
Sbjct: 125 QRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYS 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER---EQELKGQFEQAMKETVDKFQGLNL 134
+ A A++A+NG +D++ YVG K ER +EL+ QF N+
Sbjct: 185 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF-------------TNV 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D + ++L FG S + RD G+SKG GFV + E A +A+ E+N
Sbjct: 232 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNE 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + K LY AQ K ER A L+ + R
Sbjct: 292 KEVNGKKLYAGRAQTKSEREAELKKSHEEKR 322
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN K + + + Q + A+++T QG N++IKNL SID++ L
Sbjct: 109 LNYSLI------------KGQSCRIMWSQRDPALRKT---GQG-NIFIKNLDQSIDNKAL 152
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 153 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 212
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ L+AQF+ +
Sbjct: 213 GKKERLSKVEELRAQFTNV 231
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 199/487 (40%), Positives = 283/487 (58%), Gaps = 58/487 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN + D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +G+SK FGFVNFE ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V+++QG+NLY+KNL D IDDE+L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P PP P + YG +P + P + Q P + P P+ VP
Sbjct: 400 FQTPSGYFLPPMPQPQTRAAFYGPSPVVPVRPATRWSAQPSR-PPLYPEATPILRAAVP- 457
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH----------AYRYP----LGR 337
RR + T+Q +P ++PP+ + R P L R
Sbjct: 458 -----------PRRLLSNISTTRQASTQVP-RVPPQAQRLVNIGTQTVSTRLPSSSALPR 505
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQ 390
Q + + A +M P MG P VG+P P+TA + LA A P++Q
Sbjct: 506 GTQQYKYSSSARNMQP----MGHMPP-----VGEPAVHVQGQEPLTA--SLLAAAPPQEQ 554
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
+ ++GE LYPL+ L A K+TGMLLE+D +E+L LLESP++L++K+ EA+ VL+ A
Sbjct: 555 KQMIGERLYPLIHVLHPSLAGKITGMLLEIDNSELLLLLESPDSLRSKIEEAVTVLQ--A 612
Query: 451 QQQANNP 457
Q P
Sbjct: 613 HQSTETP 619
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE E+ + + N+YIKN GD +D
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREAEVGAR----------AIEFTNVYIKNFGDDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++L+E+FS FG S KVM D +G SKG GFV F EEA +A+A+MNGK I + LYV
Sbjct: 204 DDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRLERQSELKRKFEQMK 284
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
++ER A + A+
Sbjct: 175 SRKEREAEVGAR 186
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 278/479 (58%), Gaps = 55/479 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K V+VG F+ ++ERE + K K F NV+VKN E +DE LK +F +YG ITS
Sbjct: 153 MLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSH 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ D A +A LNGK+ + + YVG+AQKK+ER++ELK +
Sbjct: 213 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 273 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 332 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIF 391
Query: 234 PPR------MPMYPPGPSGLGQQFL---------YGQAPPAIIPPQAGFGYQQQLVPGMR 278
P +P PP P G + + PP QA Y M+
Sbjct: 392 QPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY-----ANMQ 446
Query: 279 PAGAPMPNFFVPVVSQGQQGQRP-GGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGR 337
P P P + G RP G++G + +P P++ P + Y
Sbjct: 447 PTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRP-PLVSQSSRPANYKY----TP 501
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
NM++ P P+ + P+T ST LA A ++Q+ +LGE
Sbjct: 502 NMRNPP------------------APQPAVHIQGQEPLT--STMLAAAPLQEQKQMLGER 541
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQAN 455
L+PL++++ D A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ A+QQA
Sbjct: 542 LFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAKQQAT 600
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 126/209 (60%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V +D G SK +GFV+FE
Sbjct: 79 QRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFE 138
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K++E +NG + + YVG+ + ERE+EL E+A T N+Y+K
Sbjct: 139 TEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELG---EKAKLFT-------NVYVK 188
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ DE LK++F ++G ITS KVM G S+G GFVAF P+ A RA E+NGK +
Sbjct: 189 NFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKEL 248
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 249 VEGKPLYVGRAQKKAERQKELKRKFEQLK 277
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 63 MNFDIIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 107 FDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 201/475 (42%), Positives = 274/475 (57%), Gaps = 47/475 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEY-GTITS 57
ML+ND++VFVG F ++ERE A +F NV++KN + DE L++ F +Y G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKTLS 220
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
VM D GKSK FGFV+FE +DA KAV+ +N K+ + R YVG+AQKK+ER+ ELK +
Sbjct: 221 VKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRK 280
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE +E + K+QG+NLY+KNL D+I+DE+L + FS FGTITS KVM + G S+G GFV
Sbjct: 281 FEMLKQERMSKYQGVNLYVKNLDDNINDERLWKEFSPFGTITSAKVMME-EGRSRGFGFV 339
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG++I SKPLYVA+AQRKEER+ L +QF M+ +A +VPP
Sbjct: 340 CFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLTSQF--MQRLAGMRAVPPSA 397
Query: 238 PM---YPPGPSGL----------GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM 284
+ P SG G+ Y +P A + P + Q +RP GA
Sbjct: 398 IIGQYQPAAASGYFMAAMPQQAQGRTAYYTPSPMAPMRPNPRWPLQ------VRPQGAHA 451
Query: 285 PNFFVPVVSQGQQGQRPGGRRGAGP--------VQQTQQPLPIMPHQMP-PRGH-AYRYP 334
F Q RP R P Q P P P Q PR Y+Y
Sbjct: 452 AGFQAITGPMRQPAPRPTQMRTVNPASVPQVPRASQGMMPRPTFPTQAAGPRALPGYKYT 511
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
RN Q P G G+M P+ + P+TA + LA A P +Q+ +
Sbjct: 512 GSVRNPQQ-PGVQGPGAMQQA--------PQSAVHIQGQEPLTA--SMLAAAPPHEQKQM 560
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L+AKV EA+ VL++
Sbjct: 561 LGERLFPLIHGMYPTLAGKITGMLLEIDNSELLHMLESPESLRAKVEEAVAVLQA 615
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 124/209 (59%), Gaps = 12/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE E + + N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAKAREF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEF-GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
N GD +DDE+L+E F ++ G S KVM D G SKG GFV+F E+A +A+ EMN K
Sbjct: 197 NFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKE 256
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + +YV AQ+K ER+ L+ +F ++
Sbjct: 257 LNGRAIYVGRAQKKAERQTELKRKFEMLK 285
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LYI +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++ KP+ + +QR
Sbjct: 72 MNFDVVKGKPIRIMWSQR 89
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 198/482 (41%), Positives = 275/482 (57%), Gaps = 51/482 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK+IF +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV++E +DA KAVE +NG + + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV- 233
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q MR + +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIIN 399
Query: 234 ---PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL-------VPGMRPAGAP 283
P P P + Y A + P + Q +P P
Sbjct: 400 QFQPTSGYFMPAVPQAQNRTTYYAPNQLAQMRPNPRWQQQGGRSQGGFQAMPSSLRQPGP 459
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM----PHQMPPRGHAYRYPLG-RN 338
N S QG R GG Q+ P P + P MPP Y+Y G RN
Sbjct: 460 RANLRHMSPSSSTQGPRAGG--------QSMGPRPSVGVSGPRAMPP----YKYATGVRN 507
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
+ P+ + P V P+TA + LA A P++Q+ +LGE L
Sbjct: 508 ---------PNPQVVQPIALQQTQP--AVHVQGQEPLTA--SMLAAAPPQEQKQMLGERL 554
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
+PL++ + + A K+TGMLLE+D +E+LH+LES E+L++KV EA+ VL++ QA A
Sbjct: 555 FPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQA---HQAKKDA 611
Query: 459 DQ 460
Q
Sbjct: 612 TQ 613
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKE+F ++G S KVM DPSG S+G GFV++ E+A++A+ EMNG +
Sbjct: 197 NFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKTVFVGRAQKKMERQAELKRKFEQLK 284
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF DA +A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 56/495 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ LK+IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP- 290
P P P + F Y P A + P + Q P +P AP+ P
Sbjct: 400 FQQPANYFLPTMPQPSNRAF-YSPNPVAPVRPAPQWASHQSRPPQYQPP-APLMRAVPPR 457
Query: 291 ------------------VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYR 332
V Q Q+ G + Q + MPH Y+
Sbjct: 458 RMHSNISTMKQASTQVPRVPLQSQRVANIGTQTAGARAQVNASIMRAMPH--------YK 509
Query: 333 YPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
Y G RN+Q +L V M GQ P+TA + LA A ++Q+
Sbjct: 510 YSCGVRNVQPIGSSAHLQQVLEPAVLMQ----------GQE-PLTA--SLLAAAPLQEQK 556
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE +YPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++
Sbjct: 557 QILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA--- 613
Query: 452 QQANNPADQLASLSL 466
QA A + A SL
Sbjct: 614 HQAKESAPKSAPQSL 628
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++LKE+FS FG S KVM D SG S+G GFV + EEA +A+ EMNGK + + +YV
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRIERQGELKRKFEQIK 284
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 278/471 (59%), Gaps = 70/471 (14%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVG ++ K+ER E + + KF NV+VKN + DE +K+I E G I S
Sbjct: 164 MLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSL 223
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE ++A +AV LNGK+ R + G+A+K++ER E+K +
Sbjct: 224 KVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEI 283
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ +E +++FQG+NLYIKNL D IDDE+L+E FS +GTI+S KVM+D G SKG GFV
Sbjct: 284 EKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVC 343
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ----FSQMR-PVAMGPSV 233
FS+PEEA++A+ EMNG++++SKPLYVA+AQR+EER+A+L AQ S +R P
Sbjct: 344 FSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLAAQHMHRISGLRMHQGQRPFF 403
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P+MP P +G P QQ MRP G V +
Sbjct: 404 TPQMPQVRP---------RWGMPP-------------QQQQQQMRPTG---------VQN 432
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ------MPPRGHAYRYPLGRNMQDFPFDMG 347
G Q P G GP +P MP Q +PP+ Y++ + +++ P
Sbjct: 433 MGGQAGMPQG----GPAG-----MPRMPVQQARMGGVPPQRQPYKF--SQTVRNPP---P 478
Query: 348 AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 407
AG M + G GIP G P+ + LA A+P++Q+ +LGE L+PL++
Sbjct: 479 AGQM----PEGGQGIP------GGQEPLN--PSVLAAATPQEQKQMLGERLFPLIQTNHP 526
Query: 408 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
D A K+TGMLLE+D E+LH+LES +AL+ KV EA+ VLR+ +++ A
Sbjct: 527 DMAGKITGMLLEIDNAELLHMLESRDALQMKVDEAVSVLRAHQAKESTTAA 577
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 126/209 (60%), Gaps = 10/209 (4%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 76
Q+R+ K+ N+F+KNLD+S ++ L F +G I S + +D G K +GFV+F
Sbjct: 89 QQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGNPKGYGFVHF 148
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
E D A +A+ ++G +D++ +VG+ K ER +++ Q + KF N+Y+
Sbjct: 149 ETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPK--------KF--TNVYV 198
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KN GD +DDE++KE+ +E G I S KVM DP G SKG GFV+F TPEEA A+ +NGK
Sbjct: 199 KNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKE 258
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I + L+ A+++ ER A ++A+ + R
Sbjct: 259 IGGRRLWAGRAKKRAERAAEVKAEIEKKR 287
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G++ S V RD +S + +VNF+ A KA++
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDT 73
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + Q+ + G N++IKNL SID++ L
Sbjct: 74 MNFDPIKGRPCRIMWQQRDPSLRKSGVG----------------NIFIKNLDKSIDNKSL 117
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ +D G KG GFV F T + A A+A ++G ++ K ++V
Sbjct: 118 YDTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWM 177
Query: 209 RKEERRARLQAQ 220
K+ER ++ Q
Sbjct: 178 SKKERIEKMGTQ 189
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 197/493 (39%), Positives = 278/493 (56%), Gaps = 52/493 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ F +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV- 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + GP +
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLG 398
Query: 234 ---------------PPRMPMYPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLV 274
PP Y P P Q + PP PP Q
Sbjct: 399 SFQQPANYFLSAMPQPPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRR 458
Query: 275 PGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 334
+ + VP V+Q Q G + AG Q P M MP Y+Y
Sbjct: 459 MSSNISTMKQASTQVPRVAQHSQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYS 511
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN+Q ++ V M GQ P+TA + LA A ++Q+ +
Sbjct: 512 CGVRNVQPIVSSTHLQQVMEPAVLMQ----------GQE-PLTA--SLLAGAPLQEQKQM 558
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE +YP++ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ Q
Sbjct: 559 LGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQ 615
Query: 454 ANNPADQLASLSL 466
A A + A SL
Sbjct: 616 AKENAQKSAQPSL 628
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++L+E+FS FG S KVM D SG S+G GFV + EEA +A++EMNGK + + +YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F Q++
Sbjct: 264 GRAQKRIERQSELKRKFEQIK 284
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL +SID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 276/476 (57%), Gaps = 40/476 (8%)
Query: 3 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S V
Sbjct: 163 LNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKV 222
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ
Sbjct: 223 MTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQ 282
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++ + ++Q +NLY+KNL D+IDDE+L++ FS FGTITS KVM + G SKG GFV FS
Sbjct: 283 MKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFS 341
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR---PVAMGPSVPPRM 237
+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q + P P + P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQ 401
Query: 238 PMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQQ------QLVPG-MRPAGAPM 284
P P G P Y + A + P + Q Q PG +RPA +
Sbjct: 402 PAPPSGYFMAAVPQTQNHAAYYPPSQTAQLRPSPCWTAQGARPHPFQNKPGAIRPAAPRV 461
Query: 285 P-NFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLP-IMPHQMPPRGHA---YRYPLG-RN 338
P N P SQ + P +R A +T P P P H Y+Y G RN
Sbjct: 462 PFNTMRPASSQVPRVMSP--QRVANKSTKTVGPRPAAAAAAATPAVHTVPRYKYAAGVRN 519
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
Q ++ + + +V T + LA+A P++Q+ +LGE L
Sbjct: 520 PQQH-------------LNAQPQVKMQQPAVHVQGQETLTAAMLASAPPKEQKQMLGERL 566
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+PL++ + A K+TGMLLE D +E+LH+LESPE+L +KV EA+ VL++ ++A
Sbjct: 567 FPLIQAMHPTLAGKITGMLLETDNSELLHMLESPESLCSKVDEAVVVLQAHQAKEA 622
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G + S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEFP----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKCKFEQMK 284
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A AL MN +I KPL + +QR
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 277/479 (57%), Gaps = 45/479 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSV 217
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 218 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 277
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 278 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 336
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 337 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 396
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 397 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 455
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 456 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 508
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 509 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 560
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 561 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 619
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 14/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+L FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 254 NGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 277/479 (57%), Gaps = 45/479 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSV 217
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 218 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 277
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 278 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 336
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 337 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 396
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 397 YQPAPPSGYFMAAIPQTQNRAAYYPPSQVAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 455
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 456 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 508
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 509 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 560
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 561 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 619
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 14/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+L FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 254 NGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 277/479 (57%), Gaps = 45/479 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSV 217
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 218 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 277
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 278 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 336
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 337 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 396
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 397 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 455
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 456 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 508
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 509 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 560
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 561 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 619
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 14/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+L FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 254 NGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 195/488 (39%), Positives = 281/488 (57%), Gaps = 74/488 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITS 57
ML+ND++VFVGHF ++ERE V TK F N+++KN ++ TDE LK+ F +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKERE-VEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLS 219
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
VMRD G+S+ FGFVN+ + +DA KAV+ +NGK+ + + YVG+AQK+ ER+ ELK +
Sbjct: 220 VRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRK 279
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
F+Q ++ + ++QG+NLY+KNL DSIDDE+L++ FS +GTITS KVM + +G SKG GFV
Sbjct: 280 FDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTE-AGQSKGFGFV 338
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG+++ +KPLYVA+AQR+EER+A L ++ Q RM
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQ------------RM 386
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
PS + Y Q+ + PQ Y V +R P+P + Q Q+
Sbjct: 387 ATLRTMPSPIIDS--YHQSGYYMTVPQVRSFYNHNAVSNVR----PIPRW----PGQPQR 436
Query: 298 GQRP------GG---RRGAGPVQ-----QTQQPLPIMPHQMPP----------------- 326
Q P GG RRG+ + TQ P I Q
Sbjct: 437 PQDPYSSHIVGGSFARRGSTTITTVKQASTQAPRIIASTQKTNNIGTQTVGGRADVAGVL 496
Query: 327 RGHAYRY------PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 380
R Y+Y PL ++ P M ++PV + + P P+TA +
Sbjct: 497 RSGQYKYSSAVRNPL--HVVTVPAPMTRSQVVPV------SMVEPPVHILGPEPLTA--S 546
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
LA A P Q+ LLG+ LYPL+ + + A K+TGMLLE+D +E+LH+LESPE+LK+KV
Sbjct: 547 MLAAAPPMDQKQLLGDRLYPLILAQQPNLAGKITGMLLEIDNSELLHMLESPESLKSKVD 606
Query: 441 EAMEVLRS 448
EA+ VL++
Sbjct: 607 EAIAVLQA 614
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KN+D+S ++ L F +G I S V+ D G SK +GFV+FE
Sbjct: 88 QRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG + + ERE E + MK T N+YIK
Sbjct: 147 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFG---TKVMKFT-------NIYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD++ DEKLKE FS FG S +VMRD G S+G GFV ++ E+A +A+ EMNGK +
Sbjct: 197 NFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ++ ER+ L+ +F Q++
Sbjct: 257 NGKIIYVGRAQKRLERQGELKRKFDQLK 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKN+ DSID++ L
Sbjct: 72 MNYDVIKGRPIRIMWSQRDPALRKSGVG----------------NIFIKNIDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G SKG GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
++ER
Sbjct: 175 SRKER 179
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 210/560 (37%), Positives = 287/560 (51%), Gaps = 126/560 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D TDE+ +++FG+YG ITSA
Sbjct: 201 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSA 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + +A AV+ LN K F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 261 TISRDDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-------- 170
E A E K+QG+NLY+KNL D +DD+KL+ELFS FGTITS KVMRD G+
Sbjct: 321 EAARLEKASKYQGVNLYVKNLTDDVDDDKLRELFSPFGTITSAKVMRDTVGVSSDSDKEE 380
Query: 171 ----------------------------------------SKGSGFVAFSTPEEASRALA 190
SKG GFV FS+P+EAS+A+
Sbjct: 381 GKEASEKEGEEASEKEETKVKAEDEEKTETKKPEKKVFGKSKGFGFVCFSSPDEASKAVT 440
Query: 191 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSG 246
EMN +M+ KPLYVA+AQRK+ R+++L+A + + P+ M P G
Sbjct: 441 EMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYG 500
Query: 247 LGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP---- 301
GQQ FL A Q G G+ Q PGM AG P G+ GQ P
Sbjct: 501 PGQQGFLPANA------GQRGLGFAPQ--PGMVMAGIP----------GGRPGQYPGGFP 542
Query: 302 --GGRRGAGPVQQT----QQPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGSMLP 353
GGR GP QQ Q +PI Q P G + YP M F GAG
Sbjct: 543 QQGGRGIGGPNQQIPQNFGQGIPIGAMQAGPGGIPNGMAYP---QMAQVQFGRGAGGRGQ 599
Query: 354 VPVDMGAGIP----------------------------RRDASVGQPM-----PITALST 380
VP GIP ++ G P+ P +
Sbjct: 600 VP----QGIPPNVGGPRGGPGFGQGRGGMPPRPGPGGRGQNVPAGAPVAPEGAPGSLTLQ 655
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
L+ A P+QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L L++ AL+AKV
Sbjct: 656 TLSAAPPQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLIDDESALRAKVD 715
Query: 441 EAMEVLRSVAQQQANN-PAD 459
EA+ V + + ++ P+D
Sbjct: 716 EALHVYDEYMKNKGSDEPSD 735
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 127 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 186
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 187 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 233
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ +ELF ++G ITS + RD SG S+G GFV + + A A+ E+N
Sbjct: 234 YVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELND 293
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K S+ LYV AQ+K ER L+ Q+ R
Sbjct: 294 KDFHSQKLYVGRAQKKHEREEELRRQYEAAR 324
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 111 LNYTLIKGRPCRIMWSQR 128
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 194/486 (39%), Positives = 280/486 (57%), Gaps = 44/486 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK+IF +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L +Q+ Q +R V P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRMASVRAVP-NPVLN 398
Query: 235 PRMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFG--------YQQQLVPGMRPA 280
P P P G P + Y + A + P + +Q +RP+
Sbjct: 399 PYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQGVRPQHFQNMPNAAVRPS 458
Query: 281 GAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPHQMPPRG-HAYRYPLG-R 337
AP P F PV Q + +R G+ + RG Y+Y G R
Sbjct: 459 -APRPQTFNPVRPASQVPRMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVR 517
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 397
N Q +P + P +P+ + L+ A P++Q+ +LGE
Sbjct: 518 NPQQ---------RMPTQPQVPMQQPAVHVQGQEPLTASMLAAA----PPQEQKQMLGER 564
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQ 452
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+
Sbjct: 565 LFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 624
Query: 453 QANNPA 458
+PA
Sbjct: 625 SVPSPA 630
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE E+ + ++ N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDEKLKE+F ++G S +VM D SG SKG GFV+F E+A RA+ EMNGK +
Sbjct: 197 NFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A + A+
Sbjct: 175 SRKEREAEMGAR 186
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 278/473 (58%), Gaps = 45/473 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E +DE L+ +F +YG ITS
Sbjct: 153 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSH 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DG S+ FGFV FE+ D A +A LNGK+ + + YVG+AQKK+ER++ELK +
Sbjct: 213 KVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 273 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 332 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIF 391
Query: 234 PPR------MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNF 287
P +P PP Q YG A + P + Q + P + A + PN
Sbjct: 392 QPGSAGGYFVPTIPPA------QRFYGPAQITQMRPSQRWTAQPPVRPSTQTAASAYPNM 445
Query: 288 FVPV--VSQGQQGQRPGGRRGAGPV--QQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 343
P ++G GA P+ QQ P + + P G Y +++ P
Sbjct: 446 QAPFRPTTRGPTQTALRTSLGARPITGQQGVAAAPSIRAPLVPSGRTAGYKYTSTVRNPP 505
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 403
P+ + P+TA + LA A ++Q+ +LGE L+PL++
Sbjct: 506 ------------------APQPAVHIQGQEPLTA--SMLAAAPLQEQKQMLGERLFPLIQ 545
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQAN 455
++ D A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ A+QQA
Sbjct: 546 RMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQQAT 598
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 128/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D +G SK +GFV+FE
Sbjct: 79 QRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENGASKGYGFVHFE 138
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K++E +NG + ++ YVG+ + ERE+EL E+A T N+Y+K
Sbjct: 139 TEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLFT-------NVYVK 188
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ DE L+++F ++G ITS KVM G S+G GFVAF P+ A RA E+NGK +
Sbjct: 189 NFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKEL 248
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
V KPLYV AQ+K ER+ L+ +F Q++
Sbjct: 249 VEGKPLYVGRAQKKAERQKELKRKFEQLK 277
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKAIDNKAM 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D +G SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 199/502 (39%), Positives = 279/502 (55%), Gaps = 66/502 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG+F ++ERE A +F NV++KN E ++E L++ F +G S
Sbjct: 161 MLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFVNFE DA KAVE +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V ++QG+NLY+KNL D IDDE+L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MR--------- 225
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATLRTLPGPLFCS 399
Query: 226 ----PVAMGPSVP---PRMPMYP--------PGPSGLGQQFL----YGQAPPAI---IPP 263
P PS+P PR P Y P P GQ Y A P + PP
Sbjct: 400 FQPPPGYFVPSIPQPQPRTPYYNASPVAPVRPAPRWNGQHSRPPSSYHTATPVLRTNAPP 459
Query: 264 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 323
+ + MR A +P VP P +R A QT P
Sbjct: 460 RRILNN----ISTMRQASTQVPR--VP----------PNAQRMANIGTQTVSVRAPSPPT 503
Query: 324 MPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 382
Y+Y RN+Q +M P+P+ + + P+TA + L
Sbjct: 504 FSRGISQYKYSSAVRNIQPL------NAMPPIPMQQ---VVEPAVHIHGQEPLTA--SML 552
Query: 383 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 442
A A P++Q+ +LGE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L +K+ EA
Sbjct: 553 AAAPPQEQKQILGERLYPLIHAMHPFLAGKITGMLLEIDNSELLLMLESPESLHSKIEEA 612
Query: 443 MEVLRSVAQQQANNPADQLASL 464
+ VL+ ++++ + A L
Sbjct: 613 VAVLQVHQMSESSHKSASTAFL 634
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE E +AM+ T N+YIKN G+ +
Sbjct: 154 AIATMNGMLLNDRKVFVGNFKSRREREAEYGA---KAMEFT-------NVYIKNFGEEMS 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+E+L+E FS FG S KVM D G SKG GFV F ++A +A+ +MNGK I + LYV
Sbjct: 204 NERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F Q++
Sbjct: 264 GRAQKRMERQSELKRKFEQIK 284
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NIFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G S+G GFV F T E A+RA+A MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFK 174
Query: 209 RKEERRARLQAQ 220
+ ER A A+
Sbjct: 175 SRREREAEYGAK 186
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 190/465 (40%), Positives = 272/465 (58%), Gaps = 45/465 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND +VFVGHF ++ERE A +F N++VKNL ++ L+++F ++G + S
Sbjct: 161 MLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALGSPFLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P GQ YG + ++ PPQ P R P P
Sbjct: 400 FQQPTSYFLPAVPQPPGQAAYYGSS--SMPPPQ----------PAPRWTSQP------PR 441
Query: 292 VSQGQQGQRPG-GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP-LGRNMQDFPFDMGAG 349
S + PG RR + + +Q +P +P H R +G G G
Sbjct: 442 SSSASMVRPPGMSRRPSAHISSMRQASTQVPRPLP---HTQRVANIGTQTTG---SSGTG 495
Query: 350 SMLP----VPVDMGAGIPR-RDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLV 402
+P +P R ++ +V P P+T + LA A +Q+ ++GE LYPL+
Sbjct: 496 CCMPGRPLLPYKSTHNTHRVQEPAVHVPGQEPLTV--SMLAAAPLHEQKQMIGERLYPLI 553
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
+++ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL+
Sbjct: 554 REVQSQLAGKITGMLLEIDNSELLLMLESPESLHAKVEEAVAVLQ 598
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL+ S ++ L F +G I S V D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQH 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +D + +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDHKVFVGHFKSRREREVELGA---RAMEFT-------NIYVKNLQADVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L+ELFS+FG + S KVMRD SG S+G GFV F T EEA +A+ MNGK + + LYV
Sbjct: 204 EQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFEMIKGQPIRIMWSQRDPGLRKSGVG----------------NIFIKNLEASIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G S+G GFV F T E A A+ MNG ++ ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER L A+
Sbjct: 175 SRREREVELGAR 186
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 276/485 (56%), Gaps = 39/485 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +NDK VFVG + +++R+ ++++F N+++KNL TT E+L ++FG++G ITSA
Sbjct: 324 MQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSA 383
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V D GK + FGFVN+EN + A+KAV+AL+ K + YV +AQK++ER+ ELK
Sbjct: 384 AVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAH 443
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ET K+QG+NLY+KNL D DDEKL+ F+ FGTITSCKVM+D G SKG GFV
Sbjct: 444 EQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVC 503
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRP---VAMG-P 231
FS+P+EA++A+AEMNGKM+ SKPLYV++AQRKE R+ +L+AQ SQMR A G P
Sbjct: 504 FSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIP 563
Query: 232 SVP---PRMPMYPPG----PSGLGQQFLY-GQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
P P PMY G P G+ +Y PA +PP+ + Q+ P P GAP
Sbjct: 564 GAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQMAPMGMPGGAP 623
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQM----PPR---GHAYRYPLG 336
P Q G P + +P P + PP G+ P
Sbjct: 624 YPPH--------PQDYPGYPVGGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPM 675
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS-------VGQPMPITALSTALANASPEQ 389
P G GSM P G S V P+ ALA ASP +
Sbjct: 676 NGRGSAPSTNGPGSMRGAPPQSRDGYAPSSLSGRAVSHRVSDIAPVGLSPAALAKASPAE 735
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ +LGE+LYP + + + + A K+TGM+LE++ E++HLLE+ AL AKV EA++VL
Sbjct: 736 QKQMLGEALYPQIAEKQPEKAGKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEY 795
Query: 450 AQQQA 454
++ A
Sbjct: 796 ERKDA 800
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE+ ++ L F +G I S V D G SK +GFV++
Sbjct: 250 QRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYV 309
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A A++ +NG + +D+ +VG + +R+ E++ QF NL
Sbjct: 310 TGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQF-------------TNL 356
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL E+L E+F +FG ITS V D G +G GFV + E AS+A+ ++
Sbjct: 357 YIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHD 416
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYVA AQ++ ER A L+ Q +
Sbjct: 417 KDYKGNVLYVARAQKRTERDAELKKAHEQQK 447
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 20/200 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA DA +A+E
Sbjct: 173 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 232
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN ++ + +Q+ + +G N++IKNL ++ID++
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQG----------------NIFIKNLDETIDNKA 276
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + F+ FG I SCKV D G SKG GFV + T E A A+ +NG + K ++V +
Sbjct: 277 LHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIH 336
Query: 208 QRKEERRARL---QAQFSQM 224
+ +R+A++ ++QF+ +
Sbjct: 337 VPRRDRQAKIDEVRSQFTNL 356
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 276/485 (56%), Gaps = 39/485 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +NDK VFVG + +++R+ ++++F N+++KNL TT E+L ++FG++G ITSA
Sbjct: 235 MQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSA 294
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V D GK + FGFVN+EN + A+KAV+AL+ K + YV +AQK++ER+ ELK
Sbjct: 295 AVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAH 354
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ET K+QG+NLY+KNL D DDEKL+ F+ FGTITSCKVM+D G SKG GFV
Sbjct: 355 EQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVC 414
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRP---VAMG-P 231
FS+P+EA++A+AEMNGKM+ SKPLYV++AQRKE R+ +L+AQ SQMR A G P
Sbjct: 415 FSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIP 474
Query: 232 SVP---PRMPMYPPG----PSGLGQQFLY-GQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
P P PMY G P G+ +Y PA +PP+ + Q+ P P GAP
Sbjct: 475 GAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQMAPMGMPGGAP 534
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQM----PPR---GHAYRYPLG 336
P Q G P + +P P + PP G+ P
Sbjct: 535 YPPH--------PQDYPGYPVGGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGNGAPIPPM 586
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDAS-------VGQPMPITALSTALANASPEQ 389
P G GSM P G S V P+ ALA ASP +
Sbjct: 587 NGRGSAPSTNGPGSMRGAPPQSRDGYAPSSLSGRAVSHRVSDIAPVGLSPAALAKASPAE 646
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ +LGE+LYP + + + + A K+TGM+LE++ E++HLLE+ AL AKV EA++VL
Sbjct: 647 QKQMLGEALYPQIAEKQPEKAGKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEY 706
Query: 450 AQQQA 454
++ A
Sbjct: 707 ERKDA 711
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE+ ++ L F +G I S V D G SK +GFV++
Sbjct: 161 QRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYV 220
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A A++ +NG + +D+ +VG + +R+ E++ QF NL
Sbjct: 221 TGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQF-------------TNL 267
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL E+L E+F +FG ITS V D G +G GFV + E AS+A+ ++
Sbjct: 268 YIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHD 327
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYVA AQ++ ER A L+ Q +
Sbjct: 328 KDYKGNVLYVARAQKRTERDAELKKAHEQQK 358
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA DA +A+E
Sbjct: 85 SLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQ 144
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++ + +Q+ + +G N++IKNL ++ID++ L
Sbjct: 145 LNYSLIKNKACRIMWSQRDPSLRKTGQG----------------NIFIKNLDETIDNKAL 188
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D G SKG GFV + T E A A+ +NG + K ++V +
Sbjct: 189 HDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHV 248
Query: 209 RKEERRARL---QAQFSQM 224
+ +R+A++ ++QF+ +
Sbjct: 249 PRRDRQAKIDEVRSQFTNL 267
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 195/490 (39%), Positives = 282/490 (57%), Gaps = 47/490 (9%)
Query: 2 LINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FE
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCF 340
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPP 235
S+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q +R V P + P
Sbjct: 341 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINP 399
Query: 236 RMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGA 282
P P G P + Y + A + P + Q Q G+RPA
Sbjct: 400 YQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPHPFQNKPGGIRPAAP 459
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYP 334
+P F + Q + +R A QT P P + PR Y+Y
Sbjct: 460 RLP-FSTMRPTSSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYA 515
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN Q ++ + + ++V T ++ LA+A P++Q+ +
Sbjct: 516 AGVRNPQQH-------------LNAQPQVTMQQSAVHVQGQETLTASMLASAPPQEQKQM 562
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+P ++ + A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ ++
Sbjct: 563 LGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKE 622
Query: 454 ANNPADQLAS 463
A A A+
Sbjct: 623 ATQKAVNSAT 632
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 100 NIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEF----------PNVYIKNFGEDMDDERLK 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQK 268
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ +F QM+
Sbjct: 269 KVERQTELKRKFEQMK 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 195/487 (40%), Positives = 274/487 (56%), Gaps = 51/487 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + +TK F NV++KN + D+ L +FG +G + S
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG AQKK +R ELK +F
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRM 237
FS+PEEA++A++EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q M V GP+ +
Sbjct: 340 FSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGPN--SLI 397
Query: 238 PMYPPGPSGLG------QQFLYGQAPPAIIPPQAGFGYQQQ--------LVPGMRPAGAP 283
Y P PSG Q P I+ P + Q V G AP
Sbjct: 398 NAYQPAPSGYSVAAVPQTQNCAPCCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAP 457
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQT--QQP-LPIMPHQMPPRGH-AYRYPLG-RN 338
+F S Q +R QT Q+P L P P R Y+Y G RN
Sbjct: 458 KSSFTTVRPSSSHVPQVMAAQRITNTSAQTTGQRPALASSPATTPVRSIPQYKYATGVRN 517
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ---PMPITALSTALANASPEQQRTLLG 395
Q + A + ++ + Q P + L TA P++Q+ +LG
Sbjct: 518 SQQH---------------LNAQLVQQPSVCIQGQEPWTASTLGTA-----PQEQKQMLG 557
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
E L+PL++ + A K+TGMLLE+D +E LH+L+SPE+L ++ EA+ L++ QAN
Sbjct: 558 ERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSRAQEAVSALQA---HQAN 614
Query: 456 NPADQLA 462
A + A
Sbjct: 615 EAAQKAA 621
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 11/200 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ NVF+KNL+++ ++ L F +G I S V+ D +G SK GFV+FE + A +
Sbjct: 95 RSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN GD +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFT----------NVYIKNFGDRMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+ L LF FG + S KVM D G SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Query: 205 AVAQRKEERRARLQAQFSQM 224
AQ+K +R L+ +F Q+
Sbjct: 264 GPAQKKVDRHIELKRKFEQV 283
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 192/463 (41%), Positives = 265/463 (57%), Gaps = 38/463 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL + L+ +F ++G I S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE +DA KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ F+ +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRLSTMRALGSPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ-----LVPGMRPAGAP-MP 285
P P P Q Y PP PP+ + Q +RPA P
Sbjct: 400 LQQPTSYFLPAVPQPPAQSPYYASGPPVQPPPR----WTAQPPRPSCASVVRPAAVSRRP 455
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFD 345
+ VP+ S Q PV QTQ I P P G +
Sbjct: 456 S--VPISSSRQVSIHV-----PRPVPQTQGVANIGTQTTGPGVMGCATPSGPLLTHKCCS 508
Query: 346 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 405
S P + G +PR++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 509 ATHNS--PRVQEPGVRVPRQE-------PLTA--SVLAAAPLHEQKQMIGERLYPLIYNM 557
Query: 406 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 558 HTQLAGKITGMLLEIDNSELLLMLESPESLSAKVEEALAVLQA 600
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQN 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AIRTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L++LFS+FG I S KVMRD SG S+G GFV F E+A +A+ +MNGK + + LYV
Sbjct: 204 ERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NVFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A A+ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER A L A+
Sbjct: 175 SRREREAELGAR 186
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 196/483 (40%), Positives = 277/483 (57%), Gaps = 60/483 (12%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG+F+ ++ER + + +F NVF+KNL E D L + G+YG+I SA
Sbjct: 162 MLLNGKKVYVGYFIPRKERLMQMGDHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSA 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+M D D KSK FGF++FE+ + A V+ +NG + + R Y G+AQKK+ER ELK +F
Sbjct: 222 KIMFD-DSKSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKARF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E +E ++QG+NLYIKNL D IDDE+L++ FS +GTITS KVM D SKG GFV
Sbjct: 281 EALKQERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKANSKGFGFVC 340
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP----VAMGPSVP 234
FS+PEEA++A+ EMNG+++V+KPLYVA+AQRK+ERRA+L +Q+ Q V S
Sbjct: 341 FSSPEEATKAVTEMNGRILVAKPLYVALAQRKDERRAQLASQYMQRVAPQVRVGQQASQQ 400
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPA---IIPPQAGFGYQQQLVPGMRPAG---------A 282
P P+YP + Y P A I P AG QL P A
Sbjct: 401 PVNPVYPT------MAYHYAAMPQAQRNIFP--AG-----QLAQVRHPRWSQQPQQARTA 447
Query: 283 PMPNF-FVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPI--MPHQMPPRGH---AYRYPLG 336
PNF +P G G++ G R Q +QP+P +P Q P G P
Sbjct: 448 AQPNFQTIP----GAAGRQFGAPRAGTATGQVRQPMPATRVPVQAAPAGQRVGGMGAPTQ 503
Query: 337 RNMQDFPFDMGAGSMLPVPVDM-GAGIPRRDASVGQP---MPITAL---------STALA 383
+ M+ +GAG+ L +PR+ P +P+ AL S LA
Sbjct: 504 QQMR-----LGAGAQLSAAKQYPKFAVPRQGMPGQMPAENVPVQALHVPGQEPLTSAMLA 558
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+A P++Q+ +LGE L+ ++ + +D A K+TGMLLE+D +E+LH+LE EAL+ KV EA+
Sbjct: 559 SALPQEQKQMLGERLFSIISETHKDLAGKITGMLLEIDNSELLHMLEVQEALEKKVEEAV 618
Query: 444 EVL 446
+VL
Sbjct: 619 QVL 621
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 119/208 (57%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ + F +G I S V+ D +G +K +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTDENGVNKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG + ++ YVG + ER ++ G ++ Q N++IK
Sbjct: 148 TQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQM-GDHQK---------QFTNVFIK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + +DD KL E ++G+I S K+M D S SKG GF++F E A+ + +NG +
Sbjct: 198 NLAEDVDDGKLAEFGGQYGSILSAKIMFDDSK-SKGFGFISFEDHEAANDFVKTINGSEV 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LY AQ+K ER A L+A+F ++
Sbjct: 257 NGRTLYAGRAQKKAERAAELKARFEALK 284
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 20/200 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 11 NSLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+N R + +Q+ + G N++IKNL SID++
Sbjct: 71 TMNFDTLKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKA 114
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ + FS FG I SCKV+ D +G++KG GFV F T E A++A+ ++NG ++ K +YV
Sbjct: 115 MYDTFSAFGHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYF 174
Query: 208 QRKEERRARL---QAQFSQM 224
++ER ++ Q QF+ +
Sbjct: 175 IPRKERLMQMGDHQKQFTNV 194
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 205/497 (41%), Positives = 287/497 (57%), Gaps = 66/497 (13%)
Query: 1 MLINDKQVFVGHFL-RKQERETVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ RK+ ++ + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 184 MLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 243
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ + A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 244 KVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRK 303
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 304 FEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFV 362
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG--- 230
FS PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 363 CFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGQIF 422
Query: 231 -----------PSVPPRMPMYPPGPSGLGQQFLYGQAP--PAIIPPQA-----GFGYQQ- 271
P++P Y GP+ + Q + P P + P A GF Q
Sbjct: 423 HQPGNAGSYFVPTLPQPQRFY--GPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFASMQA 480
Query: 272 -----------QLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM 320
+R + P + VS Q R AGP + +
Sbjct: 481 APFRAAPRAPAAQAGALRNNMSARPITGLQAVSNNMQ-----SRSMAGPA------VGVS 529
Query: 321 PHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST 380
P Q P + Y NM++ P A LP P G + + GQ P+TA +
Sbjct: 530 PGQSRPSNYKYT----ANMRNPP---QAAMALPTPS--GPSMQQAVHIQGQE-PLTA--S 577
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
LA A P++Q+ +LGE L+PL+ + K+TGMLLE+D +E+LH+LE E+LKAKV
Sbjct: 578 MLAAAPPQEQKQMLGERLFPLIHDMNPQLTGKITGMLLEIDNSELLHMLEHKESLKAKVD 637
Query: 441 EAMEVLRSVAQQQANNP 457
EA+ VL++ +QA P
Sbjct: 638 EAVAVLQAHQAKQAVAP 654
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 128/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 110 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFE 169
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K++E +NG + ++ YVGK + ER++EL E+A T N+Y+K
Sbjct: 170 TEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKELG---EKAKLFT-------NVYVK 219
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P A +A+ ++NGK I
Sbjct: 220 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEI 279
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 280 AEGKCMYVGRAQKKAERQQELKRKFEQLK 308
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 7/195 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V NL T+ L + F G + S V RD +S + +VNF+ D +
Sbjct: 12 SLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGDG 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQ--ELKGQFEQAMKETVD---KFQGL-NLYIKNLGDS 142
+G +A++ + +KG+ + M D + G+ N++IKNL +
Sbjct: 72 GSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKN 131
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
ID++ + + FS FG I SCKV +D SG SKG GFV F T E A++++ ++NG ++ K +
Sbjct: 132 IDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 191
Query: 203 YVAVAQRKEERRARL 217
YV ++ER+ L
Sbjct: 192 YVGKFIPRKERQKEL 206
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 209/510 (40%), Positives = 282/510 (55%), Gaps = 88/510 (17%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ERE + K K F NV+VKN + TDE LK++F +YGTITS
Sbjct: 153 MLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKYGTITSH 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM + KS+ FGFV FEN + A AV+ LNGK+ D + YVG+AQKK+ER+ ELK +
Sbjct: 213 RVMIK-ENKSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRR 271
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL DSIDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 272 FEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGRSKGFGFV 330
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS EEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 331 CFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQHMG--- 387
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF----- 288
++ PG +G G P I PQ FG Q V +R P +F
Sbjct: 388 ----QIFQPGGNG-------GYYVPTIPQPQRFFGKQ---VSQIRTT----PGWFRANAA 429
Query: 289 ----------------VPVVSQGQQGQRPGGRRG--------------------AGPVQQ 312
+ + G Q ++ G RG A P+
Sbjct: 430 NQNAVAANAAGGAYPAMAAATAGNQYRQAGNVRGQQQQAPNAQAQAASAAMRNSARPITG 489
Query: 313 TQ-----QPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDA 367
Q Q P+ P + A Y +NM++ P A PV ++
Sbjct: 490 QQAGGNMQTRPVAPQMAANQARAANYKYTQNMRNPPAQPVAIPTQPV--------AQQAV 541
Query: 368 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLH 427
V P+TA T LA A P +Q+ +LGE L+PL+E + A K+TGMLLE+D +E++H
Sbjct: 542 HVKGQEPLTA--TMLAAAQPAEQKQMLGERLFPLIEPMYPSIAGKITGMLLEIDNSELVH 599
Query: 428 LLESPEALKAKVAEAMEVLRSVAQQQANNP 457
+LE E+LKAKV EA+ VL A QQ P
Sbjct: 600 MLEHSESLKAKVDEAVAVLH--AHQQKTQP 627
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE + A
Sbjct: 86 KSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANT 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ +VG+ + ERE+EL E+A T N+Y+KN GD +
Sbjct: 146 SIEKVNGMLLNAKKVFVGRFIPRKEREKELG---EKAKLFT-------NVYVKNFGDELT 195
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
DE LKE+F ++GTITS +VM + S+G GFVAF PE A A+ E+NGK + K LY
Sbjct: 196 DESLKEMFEKYGTITSHRVMIKENK-SRGFGFVAFENPESAEVAVQELNGKELGDGKVLY 254
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q++
Sbjct: 255 VGRAQKKNERQMELKRRFEQLK 276
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D G SKG GFV F T E A+ ++ ++NG ++ +K ++V
Sbjct: 107 YDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 279/481 (58%), Gaps = 49/481 (10%)
Query: 3 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
+N+ +V+VG F ++ERE A +F NV++KN E ++ L ++FG++G S V
Sbjct: 468 LNNLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKV 527
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGFV++E +DA +AV+ +NGK+F+ + YVG+AQKK ER+ ELK FEQ
Sbjct: 528 MTDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQ 587
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+E ++QG+NLY+KNL DSIDDE+L++ FS FGTITS KVM + G S+G GFV FS
Sbjct: 588 VKQERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVMME-GGHSRGFGFVCFS 646
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-------MRPVAMGPSV 233
PEEA++A++EMNGK++ +KPLYVA+AQRK +R+ L Q+ Q M P
Sbjct: 647 APEEAAKAVSEMNGKLVATKPLYVALAQRKRDRQVHLTNQYMQRMASFQAMSNPVFSPYQ 706
Query: 234 PP---RMPMYP-PGPSGLGQQFLYGQ------APPAIIPPQAGFGYQQQLVPG-MRPAG- 281
PP R M P P P + YGQ +PP P F + Q VPG MRP G
Sbjct: 707 PPPTSRYFMTPLPQPQSRPAYYPYGQIPQFRPSPPHWAVPGGRF-HPFQTVPGVMRPRGP 765
Query: 282 --APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM--PHQMPPRGHAYRYPLGR 337
AP P F PV S + PV I+ QM + P R
Sbjct: 766 APAPAPAPFNPVTSS------------SVPVSALMNTQHIVNPSSQMLGPPNPPFMPPMR 813
Query: 338 NMQDFPFDMGAGS----MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
++Q + + G + +P+PV P+ P+TA + LA P++Q+ +
Sbjct: 814 SVQQYKYAAGVRNPKHLNMPLPVT----TPQPAGLFEFQEPLTA--SMLAATPPQEQKQI 867
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+PL++ L A K+TGMLLE+D +E+LH+LESPE+L+AKV EA+ VL + ++
Sbjct: 868 LGERLFPLIQALNPALAGKITGMLLEIDNSELLHMLESPESLQAKVDEAVAVLEAHQAKE 927
Query: 454 A 454
A
Sbjct: 928 A 928
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNL++S ++ L K F +G I S V+ D +G SK +GFV+FE
Sbjct: 393 QRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNILSCKVISDENG-SKGYGFVHFE 451
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A KA+E +NG + ++ + YVG+ + + ERE EL + + N+YIK
Sbjct: 452 NQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELGARAREFT----------NVYIK 501
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D+++L E+F +FG S KVM D SG SKG GFV++ E+A RA+ EMNGK
Sbjct: 502 NFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEF 561
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ F Q++
Sbjct: 562 NGKRIYVGRAQKKGERQTELKRHFEQVK 589
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F +A R L
Sbjct: 317 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLET 376
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
MN +I KP+ + +QR R
Sbjct: 377 MNLDVIKGKPVRIMWSQRDPSLR 399
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 195/479 (40%), Positives = 273/479 (56%), Gaps = 45/479 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV+FE +DA KAVE +NG + + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 ELLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++PP
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRAMPPNAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G PA+ Q Y P P P +
Sbjct: 398 INQFQPTS-------GYFMPAVPQAQNRTTY---YAPNQLAQMRPNPRWQQQGGRGQGGF 447
Query: 299 QR-PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPV 356
Q P R GP M H P G G++M P MG G P
Sbjct: 448 QGMPSSLRQPGPRGN-------MRHMSPSGGSQGPRASGQSMAPRP-SMGVPGPRTMSPY 499
Query: 357 DMGAGIPRRDASVGQPM---------------PITALSTALANASPEQQRTLLGESLYPL 401
+ + V QP+ P+TA + LA A P++Q+ +LGE L+PL
Sbjct: 500 KYATSVRNPNPQVVQPIALQQAQPAVHIQGQEPLTA--SMLAAAPPQEQKQMLGERLFPL 557
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
++ + + A K+TGMLLE+D +E+LH+LES E+L++KV EA+ VL++ QA A Q
Sbjct: 558 IQAMHANLAGKITGMLLEIDNSELLHMLESHESLQSKVEEAVAVLQA---HQAKKDATQ 613
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD ++DE+LKE+F ++G S KVM D SG S+G GFV+F E+A++A+ E+NG +
Sbjct: 197 NFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F ++
Sbjct: 257 NGKTVFVGRAQKKMERQAELKRKFELLK 284
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF DA +A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 204/505 (40%), Positives = 281/505 (55%), Gaps = 82/505 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPR 236
FS PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q M V M
Sbjct: 341 CFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANVRM------- 393
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIP----PQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 292
+GQ F G A +P PQ +G Q P PN P
Sbjct: 394 --------QQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNA 445
Query: 293 SQGQQG-----------------------------------QRPGG-----RRGAGPVQQ 312
G G Q GG R AGP
Sbjct: 446 QTGNSGFASMQSAPFRAAPRAPAAQAGALRNSMSARPITGQQAVGGANMQSRSMAGPA-- 503
Query: 313 TQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 372
+ + P Q P + Y NM++ P + + +P G + + GQ
Sbjct: 504 ----VGVSPGQSRPPNYKYT----ANMRNPP-----QTAMALPAPSGPSVQQAVHIQGQE 550
Query: 373 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 432
P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE
Sbjct: 551 -PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPSLTGKITGMLLEIDNSELLHMLEHN 607
Query: 433 EALKAKVAEAMEVLRSVAQQQANNP 457
E+LKAKV EA+ VL++ +QA P
Sbjct: 608 ESLKAKVEEAVAVLQAHQAKQAVAP 632
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 148 TEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK I
Sbjct: 198 NFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDI 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 258 SEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG SKG GFV F T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 273/487 (56%), Gaps = 46/487 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + +E L+ +F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPPQAGFGYQQQLVPGMR-PAGAPMPNFF----VPVV 292
P PSG + Q A P G QL P R P P F +
Sbjct: 400 YQPAPPSGYFMTAIPQAQNRGAYYP---AAGQMAQLRPSPRWPTQGVRPQHFQNMQSAMR 456
Query: 293 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA---------------YRYPLG- 336
S G + Q G R + + + + M PR Y+Y G
Sbjct: 457 SSGPRPQMFGSMRPSSQLPRMTANQRVATQAMGPRTATTATSITANSVRGVSQYKYATGV 516
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
RN Q + V V A + + GQ P+T +T LA A +Q+ +LGE
Sbjct: 517 RNTQQH-----VNAQPQVTVQQPAVVVQ-----GQE-PLT--TTMLAAAPLHEQKQMLGE 563
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQ 451
L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ
Sbjct: 564 RLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQ 623
Query: 452 QQANNPA 458
+ N A
Sbjct: 624 KSVTNSA 630
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 129/201 (64%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + + N+YIKN GD +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFT----------NVYIKNFGDDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+EKL+++F+++G S +VM D SG S+G GFV+F E+A +A+ EMNGK + KP+YV
Sbjct: 204 EEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F QM+
Sbjct: 264 GRAQKKVERQAELKRKFEQMK 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +P+ + +QR
Sbjct: 72 MNFDVIKGRPVRIMWSQR 89
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 197/485 (40%), Positives = 283/485 (58%), Gaps = 65/485 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKT------KFNNVFVKNLDESTTDEDLKKIFGEYGT 54
ML+NDK+VFVG FL + ER IK +F NV++KN + ++ L+ +F +YG
Sbjct: 4 MLLNDKKVFVGKFLTRSER----IKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGV 59
Query: 55 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-----WYVGKAQKKSE 109
+ S VMRD DG S+ FGFV +++ ++A AVEA+NG++ + YVG+AQKK E
Sbjct: 60 VKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQE 119
Query: 110 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169
R+QEL+GQ+EQ +E + +FQG+NLY+KNL D++ D++L+E F+ +GTITS K+M D
Sbjct: 120 RQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGEC 179
Query: 170 I----SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
S+G GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQR+E+R+A L AQ+ Q
Sbjct: 180 STGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRM 239
Query: 226 PVAMGP--SVPPRMPMYP----PGPSGL-----GQQFLYGQA------PPAIIPPQAGFG 268
+MG + P +M P G SG G Q Y Q+ P PQ GF
Sbjct: 240 TSSMGVRMATPNQMIGQPFQAAAGASGYFMPFQGAQRTYMQSQIIRTTPRWQHNPQGGF- 298
Query: 269 YQQQLVPGMRPAG--APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 326
Q+ MR G AP P+ +Q G RG P M HQ
Sbjct: 299 ---QMAGDMRSVGPRAPTTPAIRPMATQ-------VGARG------VIHPQHQMMHQQAM 342
Query: 327 RGHAYRYPLG-RN--MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
+ A++Y G RN M +P + + + V P+T S+ LA
Sbjct: 343 QQPAFKYTQGVRNPAMAGYPQSGQPQAQQQADQSLQQAV-----HVQGQEPLT--SSMLA 395
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+A P++Q+ +LGE LYPL+EQ D A+K+TGMLLE+D +E+LH+LES E+LKAKV EA+
Sbjct: 396 SAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEAV 455
Query: 444 EVLRS 448
VL++
Sbjct: 456 AVLQA 460
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 15/142 (10%)
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NG +D++ +VGK +SER ++ M E V +F N+YIKN GD D++ L
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKK--------MGERVRQF--TNVYIKNFGDKYDEKTL 50
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-----VSKPLY 203
+ +F ++G + S VMRD G S+G GFVA+ + EEA A+ MNG+ I + LY
Sbjct: 51 QVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILY 110
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K+ER+ L+ Q+ Q +
Sbjct: 111 VGRAQKKQERQQELRGQYEQQK 132
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 263/465 (56%), Gaps = 42/465 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NG++ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPILGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG PP + P R P V
Sbjct: 400 FQQPASYFLPAVPQPPAQAPYYGSGPP--------------IQPAPRWTAQPPRPSCASV 445
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS- 350
V +RP PV ++Q +PH +P H R P G +
Sbjct: 446 VRPAAMSRRP-----LTPVGSSRQVSTHVPHLVP---HTQRVANIGTQTTGPSMTGCSTP 497
Query: 351 MLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVE 403
P+ + R V +P P+TA + LA A +Q+ ++GE L+PLV
Sbjct: 498 SRPLLTHTYSTPAHRTDRVQEPAVHVPGQEPLTA--SMLAAAPLHEQKQMIGERLFPLVY 555
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 556 NVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 600
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQN 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREVELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ MNG+ + + LYV
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A A++ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER L A+
Sbjct: 175 SRREREVELGAR 186
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 277/483 (57%), Gaps = 38/483 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPP 235
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q M V P+ PP
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFF 288
P Y + A + P + Q Q +RP GAP F
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFS 458
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH-------QMPPRGHAYRYPLG-RNMQ 340
+ Q + +R A QT P P + PR Y+Y G RN Q
Sbjct: 459 TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTVPR---YKYAAGVRNPQ 515
Query: 341 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 400
++ + + +V T ++ LA+A P++Q+ +LGE L+P
Sbjct: 516 QH-------------LNAQPEVTMQQPAVHVQGQETLTASMLASAPPQKQKQMLGERLFP 562
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
L+E + A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ ++A A
Sbjct: 563 LIEAMRPTLAGKITGMLLEIDNSELLHMLESPESLGSKVDEAVAVLQAHQAKEATQKAVN 622
Query: 461 LAS 463
A+
Sbjct: 623 SAT 625
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF----------PNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKRKFEQMK 284
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 196/481 (40%), Positives = 265/481 (55%), Gaps = 57/481 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER++ + KF N+F+KNL+ T +DL+ +F +G I SA
Sbjct: 208 MLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSA 267
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ DG SK F FVN+ D A KAV+ LN K+ + ++ YVG+AQK++ER++EL+
Sbjct: 268 ALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMH 327
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLY+KN+ D DD++L+ F GTITS KVMRD G S+G GFV
Sbjct: 328 EERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVC 387
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS P+EA+RA+ EMNGKMI +KPLYV++AQ+KE RR L++Q Q + +
Sbjct: 388 FSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRNAQRLQYAA----- 442
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+GLG Y QAP P M P G PM VV G G
Sbjct: 443 -----ANGLGGPQGYMQAP--------------MYYPPMGPYGGPMMPVRGGVV--GYPG 481
Query: 299 QRP--GGRRGAGPVQ-QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV- 354
P G R G P Q P+P+ MPP G YP M ++P + P
Sbjct: 482 APPMMGARPGRYPPSGQPGAPVPM--GYMPPGGAGGNYP---GMPNYPVRPAGNARPPTA 536
Query: 355 ------PVDMGAGIPR-----------RDASVGQPMPITALSTALANASPEQQRTLLGES 397
P G+PR A+ GQP +TA ALA ASP +QR +LGE+
Sbjct: 537 ARPNGSPSGAQQGLPRGQVPARPQGDGAQAAAGQPR-LTA--QALARASPGEQRQMLGEA 593
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
+YPL+ + + + A K+TGMLLEMD E+LHL+ESP AL KV EA+ VL + P
Sbjct: 594 IYPLIHESQPELAGKITGMLLEMDNAELLHLVESPAALTEKVDEALRVLEDWGKNDEEKP 653
Query: 458 A 458
A
Sbjct: 654 A 654
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+ ++ L F +G I S V D +G S+ F FV++E
Sbjct: 134 QRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYE 193
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++++NG +D++ YVG K ER+ +++ EQ K T N++IK
Sbjct: 194 TGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVE---EQRAKFT-------NIFIK 243
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + L+++F FG I S + G+SKG FV ++T + A +A+ E+N K I
Sbjct: 244 NLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEI 303
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYV AQ++ ER L+ + R
Sbjct: 304 NGKKLYVGRAQKRAERDEELRRMHEERR 331
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + + Q + A+++T QG N++IKNL D ID++ L
Sbjct: 118 LNYSLIKNRPCRI------------MWSQRDPALRKT---GQG-NIFIKNLDDKIDNKAL 161
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV + T E A A+ +NG ++ K +YV
Sbjct: 162 HDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHI 221
Query: 209 RKEERRARLQAQ 220
K+ER+++++ Q
Sbjct: 222 SKKERQSKVEEQ 233
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 271/476 (56%), Gaps = 67/476 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE + KF N+++KN E DE LK++F +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM+D G+S+ FGFVNF + +DA KAV+ +NGK+ + + YVG+AQK+ ER+ ELK +F
Sbjct: 221 RVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 177
E ++ + ++QG+NLY+KNL DSIDDE+L++ F+ +GTITS KVM D P S+G GFV
Sbjct: 281 ELIKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQ--SRGFGFV 338
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG+++ +KPLYVA+AQR+EER+A L ++ Q R + P +
Sbjct: 339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQ-RLATLRTMTSPII 397
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR--PAGAPMPNFFVPVVSQG 295
Y QA + PQ Y V MR P P+ QG
Sbjct: 398 DSYQ-------------QAGYYMTVPQPRSFYSPNAVSTMRALPRWTGQPHRL-----QG 439
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPH--------------------QMP--PRGHAYRY 333
G RRG+ P+ +Q P+ ++P PR Y+Y
Sbjct: 440 PYTIVSGPRRGSTPIASVRQASTQAPNVISSAQKTNNIGTQTVGGRAELPGVPRSGQYKY 499
Query: 334 PLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
RN Q P G +L V + GQ P+TA + LA A Q+
Sbjct: 500 SSAVRNAQQVP-----GPVLEPSVYIQ----------GQE-PLTA--SMLAAAPLMDQKQ 541
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LLGE LYPL+ L + A K+TGMLLE+D +E+LH+LE+PE+L +KV EA+ VL++
Sbjct: 542 LLGERLYPLISTLHPNLAGKITGMLLEIDNSELLHMLETPESLHSKVDEAIAVLQA 597
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KN+DES ++ L F +G I S V+ D G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETEEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE+EL +A+K T N+YIKN G+ +
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREEELGS---KALKFT-------NIYIKNFGEDYN 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+F+ FG S +VM+D G S+G GFV F+ E+A +A+ EMNGK + K +YV
Sbjct: 204 DEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F ++
Sbjct: 264 GRAQKRLERQGELKRKFELIK 284
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L + FS G I S +V RD + S G ++ F P +A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I +P+ + +QR
Sbjct: 72 MNYDVIKGRPIRIMWSQR 89
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 198/478 (41%), Positives = 278/478 (58%), Gaps = 43/478 (8%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV++E +DA KAVE +NG + + + +VG+AQKK+ER+ ELK +F
Sbjct: 221 KVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ +A ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRIAGMRAMPANTI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G PA+ Q Y P P P + G QG
Sbjct: 398 INQFQPTS-------GYFMPAVPQAQNRTTY---YAPNQLAQMRPNPRWQQQGGRGGFQG 447
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA-GSMLPVPVD 357
P R GP +Q P Q PRG A + M P MG G P
Sbjct: 448 M-PNTLRQPGPRGNMRQMTPNSSSQ-GPRGSA------QTMAPRP-SMGVPGPRNVTPYK 498
Query: 358 MGAGIPRRDASVGQPM-------------PITALSTALANASPEQQRTLLGESLYPLVEQ 404
G+ + V QP+ P+T + LA A P++Q+ +LGE L+PL++
Sbjct: 499 YATGVRNPNPQVVQPIALQQPAVHVQGQEPLT--PSMLAAAPPQEQKQMLGERLFPLIQA 556
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
+ + A K+TGMLLE+D +E+LH+LES E+L++KV EA+ VL++ QA A Q A
Sbjct: 557 MHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQA---HQAKKDATQKA 611
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELF ++G S KVM DP+G S+G GFV++ E+A++A+ +MNG +
Sbjct: 197 NFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F ++
Sbjct: 257 NGKTVFVGRAQKKNERQAELKRKFEMLK 284
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF DA +A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 210/539 (38%), Positives = 280/539 (51%), Gaps = 105/539 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D+ TT+E+ + +F ++G ITSA
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + D+AA AVEALN K F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 TLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +GTITS KVMRD
Sbjct: 326 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEK 385
Query: 167 ------------------------------------------PSGISKGSGFVAFSTPEE 184
P G SKG GFV FS+P+E
Sbjct: 386 EAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDE 445
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYP 241
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + +R + P
Sbjct: 446 ASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQ 505
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQ--QLVPGMRPAGAPM-------------- 284
P YG IP Q G +QQ ++PGM P G
Sbjct: 506 PA-------VFYGPGQQNFIPNQRGGMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGM 557
Query: 285 -PNFFVPVVSQGQQGQR-PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQD 341
PN +P + G Q P G +GAG P M P G + P G+ M
Sbjct: 558 NPNQQIPPNAYGIGAQGLPMGMQGAGIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPP 615
Query: 342 FPFDMGAGSML--PVPVDMGAGIPRRDASVGQPMPITALSTALANASPE----------- 388
MG G +PV G G P + A GQ P A+ NASP
Sbjct: 616 NVQGMGPGGQYGRGMPVQQGMGRPGQ-AGRGQGAPAQAVGQRDENASPSGLTLQVLNAAP 674
Query: 389 --QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 675 PAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ +E+ ++LF +FG ITS + RD SG S+G GFV F++ + A+ A+ +N
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q+ R
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAAR 330
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 186/465 (40%), Positives = 254/465 (54%), Gaps = 75/465 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + +++R++ A+K F NV+VKNLD TT+E+ K+F +YG ITS
Sbjct: 220 MLLNDKKVYVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSL 279
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D GK + F FVNF D A +AV+ LN ++ ++ YVG+AQKK ER++EL+ Q+
Sbjct: 280 SLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQY 339
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++K+QG+NL++KNL D IDDE+LK FS FGTITS KVM D + SKG GFV
Sbjct: 340 EQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVC 399
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA++A+AEMN +M+ KPLYVA+AQRKE RR++L+AQ + V
Sbjct: 400 YSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAA- 458
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
YG AP I+ FG P G PMP PV ++G
Sbjct: 459 ------GIPAAAVQYGAAP--IV-----FG----------PGGYPMP----PVNARG--- 488
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQ---------MPPRGHAYRYPLGRNMQDFPFDMGAG 349
+PI+P Q MP G YP
Sbjct: 489 ------------------MPIVPGQPGAIPMYSGMPQYGAPGAYP--------------- 515
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
+ P V G DA +P + LA A E ++ ++GE LYP V E +
Sbjct: 516 GVAPAEVPAVEGDKPADAPTEAALPARLTAEDLARAPEENRKQMIGEFLYPKVYVREEEL 575
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
A K+TGMLLEMD +E+L LLE+ L KV EA+ VLR A ++A
Sbjct: 576 AGKITGMLLEMDNSELLELLENDGMLNEKVDEALAVLREYAAKEA 620
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 25/213 (11%)
Query: 16 KQERETVAIKTKFNN--------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG 66
K E+ + KTK N +++ LD T+ L ++F G + S V RD
Sbjct: 48 KDSSESASNKTKSENGNTSTSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTR 107
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
+S + +VNF N +D KA++ LN R + +Q+ ++
Sbjct: 108 RSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDP----------------SL 151
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
K N++IKNL +ID++ L + FS FG I SCKV D G SKG GFV F + + A+
Sbjct: 152 RKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSAN 211
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
A+ +NG ++ K +YV + +R+++ +A
Sbjct: 212 AAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEA 244
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 210/539 (38%), Positives = 280/539 (51%), Gaps = 105/539 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D+ TT+E+ + +F ++G ITSA
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + D+AA AVEALN K F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 TLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +GTITS KVMRD
Sbjct: 326 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEK 385
Query: 167 ------------------------------------------PSGISKGSGFVAFSTPEE 184
P G SKG GFV FS+P+E
Sbjct: 386 EAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDE 445
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYP 241
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + +R + P
Sbjct: 446 ASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQ 505
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQ--QLVPGMRPAGAPM-------------- 284
P YG IP Q G +QQ ++PGM P G
Sbjct: 506 PA-------VFYGPGQQNFIPNQRGGMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGM 557
Query: 285 -PNFFVPVVSQGQQGQ-RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQD 341
PN +P + G Q P G +GAG P M P G + P G+ M
Sbjct: 558 NPNQQIPPNAYGIGAQGLPMGMQGAGIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPP 615
Query: 342 FPFDMGAGSML--PVPVDMGAGIPRRDASVGQPMPITALSTALANASPE----------- 388
MG G +PV G G P + A GQ P A+ NASP
Sbjct: 616 NVQGMGPGGQYGRGMPVQQGMGRPGQ-AGRGQGAPAQAVGQRDENASPSGLTLQVLNAAP 674
Query: 389 --QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 675 PAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ +E+ ++LF +FG ITS + RD SG S+G GFV F++ + A+ A+ +N
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q+ R
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAAR 330
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGRPCRI------------MWSQRDPALRKTG---QG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 193/490 (39%), Positives = 282/490 (57%), Gaps = 47/490 (9%)
Query: 2 LINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FE
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFE 281
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCF 340
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPP 235
S+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q +R V P + P
Sbjct: 341 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQRMASVRAVP-NPVINP 399
Query: 236 RMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGA 282
P P G P + Y + A + P + Q Q G+RPA
Sbjct: 400 YQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPHPFQNKPGGIRPAAP 459
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYP 334
+P F + Q + +R A QT P P + PR Y+Y
Sbjct: 460 RLP-FSTMRPTSSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYA 515
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN Q ++ + + ++V T ++ LA+A P++Q+ +
Sbjct: 516 AGVRNPQQH-------------LNAQPQVTMQQSAVHVQGQETLTASMLASAPPQEQKQM 562
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+P ++ + A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ ++
Sbjct: 563 LGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKE 622
Query: 454 ANNPADQLAS 463
A A A+
Sbjct: 623 ATQKAVNSAT 632
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 100 NIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEF----------PNVYIKNFGEDMDDERLK 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQK 268
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ +F QM+
Sbjct: 269 KVERQTELKRKFEQMK 284
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 199/490 (40%), Positives = 275/490 (56%), Gaps = 57/490 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + D+ LK++F +YG S
Sbjct: 162 MLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSV 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV++E +DA KAVE +NG + + + +VG+AQKK ER+ ELK +F
Sbjct: 222 KVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKF 281
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 282 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 340
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG---- 230
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q MR +
Sbjct: 341 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIIN 400
Query: 231 ----------PSVPP---RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM 277
P+VP R Y P Q + P Q +P
Sbjct: 401 QFQPAGGYFMPAVPQAQNRTTYYAPN------QLTQMRPNPRWQQQGGRGQGGFQGMPSS 454
Query: 278 RPAGAPMPNFFVPVVSQGQQGQR--PGGRRGAGPVQQTQQPLPIM----PHQMPPRGHAY 331
P N + QG R P G + G Q P P M P MPP Y
Sbjct: 455 LRQPGPRANIRHLAPNASNQGPRGMPTGAQRVGGTGQPMGPRPAMGMTTPRAMPP----Y 510
Query: 332 RYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
+Y RN Q + P+ + P V P+TA + LA A P++Q
Sbjct: 511 KYASTIRNTQ---------PQVVQPIALQQAQP--AVHVQGQEPLTA--SMLAAAPPQEQ 557
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LES E+L++KV EA+ VL++
Sbjct: 558 KQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQA-- 615
Query: 451 QQQANNPADQ 460
QA A Q
Sbjct: 616 -HQAKKDATQ 624
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 89 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE E+ + ++ N+YIK
Sbjct: 148 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFT----------NVYIK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD++LKELF ++G S KVM DP+G S+G GFV++ E+A++A+ EMNG +
Sbjct: 198 NFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTEL 257
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 258 NGKTVFVGRAQKKMERQAELKRKFEQLK 285
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 73 MNFDVVKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 117 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 175
Query: 209 RKEERRARLQAQ 220
++ER A + A+
Sbjct: 176 SRKEREAEMGAK 187
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 202/504 (40%), Positives = 281/504 (55%), Gaps = 80/504 (15%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E T++ LK +F +YGTITS
Sbjct: 205 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKYGTITSH 264
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 265 KVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRK 324
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 325 FEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFV 383
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q +R MG
Sbjct: 384 CFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANVRMQQMGQIF 443
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
PS G F+ P + PQ +G Q P PN P
Sbjct: 444 Q---------PSNAGSYFV-----PTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNTQ 489
Query: 294 QGQQG-----------------------------------QRPGG-----RRGAGPVQQT 313
G G Q GG R AGP
Sbjct: 490 TGTSGFASMQAAPFRAAPRAPAAQAGALRNSMSARPITGQQAVGGANMQSRTMAGPA--- 546
Query: 314 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
+ + P Q P + Y NM++ P + + +P G + + GQ
Sbjct: 547 ---VGVSPGQSRPSNYKYT----ANMRNPP-----QTAMAIPAPSGPSVQQAVHIQGQE- 593
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE E
Sbjct: 594 PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHSE 651
Query: 434 ALKAKVAEAMEVLRSVAQQQANNP 457
+LKAKV EA+ VL++ +QA P
Sbjct: 652 SLKAKVEEAVAVLQAHQAKQAVAP 675
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 131 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ YVGK + ERE+EL E+A T N+Y+K
Sbjct: 191 TEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVK 240
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + ++KLK++F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK I
Sbjct: 241 NFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEI 300
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 301 AEGKCMYVGRAQKKAERQQELKRKFEQLK 329
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 193/490 (39%), Positives = 282/490 (57%), Gaps = 47/490 (9%)
Query: 2 LINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 130 LLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 189
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +FE
Sbjct: 190 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFE 249
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV F
Sbjct: 250 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCF 308
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPP 235
S+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q +R V P + P
Sbjct: 309 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQRMASVRAVP-NPVINP 367
Query: 236 RMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGA 282
P P G P + Y + A + P + Q Q G+RPA
Sbjct: 368 YQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPHPFQNKPGGIRPAAP 427
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYP 334
+P F + Q + +R A QT P P + PR Y+Y
Sbjct: 428 RLP-FSTMRPTSSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYA 483
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN Q ++ + + ++V T ++ LA+A P++Q+ +
Sbjct: 484 AGVRNPQQH-------------LNAQPQVTMQQSAVHVQGQETLTASMLASAPPQEQKQM 530
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+P ++ + A K+TGMLLE+D +E+LH+LESP++L++KV EA+ VL++ ++
Sbjct: 531 LGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVDEAVAVLQAHQAKE 590
Query: 454 ANNPADQLAS 463
A A A+
Sbjct: 591 ATQKAVNSAT 600
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 11/166 (6%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + +
Sbjct: 98 VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAKAK 156
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 157 EF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMK 252
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 210/539 (38%), Positives = 280/539 (51%), Gaps = 105/539 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D+ TT+E+ + +F ++G ITSA
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + D+AA AVEALN K F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 TLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +GTITS KVMRD
Sbjct: 326 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEK 385
Query: 167 ------------------------------------------PSGISKGSGFVAFSTPEE 184
P G SKG GFV FS+P+E
Sbjct: 386 EAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDE 445
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYP 241
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + +R + P
Sbjct: 446 ASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQ 505
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQ--QLVPGMRPAGAPM-------------- 284
P YG IP Q G +QQ ++PGM P G
Sbjct: 506 PA-------VFYGPGQQNFIPNQRGGMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGM 557
Query: 285 -PNFFVPVVSQGQQGQR-PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQD 341
PN +P + G Q P G +GAG P M P G + P G+ M
Sbjct: 558 NPNQQIPPNAYGIGAQGLPMGMQGAGIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPP 615
Query: 342 FPFDMGAGSML--PVPVDMGAGIPRRDASVGQPMPITALSTALANASPE----------- 388
MG G +PV G G P + A GQ P A+ NASP
Sbjct: 616 NVQGMGPGGQYGRGMPVQQGMGRPGQ-AGRGQGAPAQAVGQRDENASPNGLTLQVLNAAP 674
Query: 389 --QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 675 PAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ +E+ ++LF +FG ITS + RD SG S+G GFV F++ + A+ A+ +N
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q+ R
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAAR 330
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 197/483 (40%), Positives = 268/483 (55%), Gaps = 49/483 (10%)
Query: 1 MLINDKQVFVGHFLRKQERE-TVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVG F+ + ERE + K + F NV+VKN E D LK++F YG ITSA
Sbjct: 162 MLLNEKKVFVGKFVPRSERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSA 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM D GKS+ FGFV+FEN D+A +AV+ LN K+ + ++ YVG+AQKK+ER +LK +
Sbjct: 222 RVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGF 176
FEQ E + ++QG+NLY+KNL D IDDE+L+ F+ +GTITS KVM D +G SKG GF
Sbjct: 282 FEQLKMERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGF 341
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-P 235
V FS+PEEA++A+ EMNG++IV KPLYVA+AQRKE+RRA L +QF Q G VP
Sbjct: 342 VCFSSPEEATKAVTEMNGRIIVQKPLYVALAQRKEDRRAHLSSQFVQR---FTGVRVPFG 398
Query: 236 RMPMYPPGPSGLG-------QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG------- 281
+MP P+ + F + PQ G QQ V G
Sbjct: 399 QMPFNHSTPTSFIVPASMHPRAFFASGNVANNVRPQRWAGGQQIRVSGQYAMAGGAPMAT 458
Query: 282 --------APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY 333
AP P QGQ G + +P+ H G R
Sbjct: 459 AAAANFQRAPRPTM---------QGQNAGVAAARNATMSSTRPITSTIHGAAGSGTQSRN 509
Query: 334 PLGRNMQ-------DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-PITALSTALANA 385
+G Q F F + P A + +A + Q P+T + LA A
Sbjct: 510 RVGVAPQQAPNSRPTFKFTNSVRNAQPSTPAGAAPMNASNAVLVQGQEPLT--TQMLAEA 567
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
P Q+ +LGE L+PL+ + D A K+TGMLLE+D +E+LH+LE E+L+AKV EA+ V
Sbjct: 568 CPRDQKQMLGERLFPLIYAMHADLAGKITGMLLEIDNSELLHMLEHSESLRAKVEEAVAV 627
Query: 446 LRS 448
L++
Sbjct: 628 LQA 630
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNL + ++ + F +G I S V D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANE 154
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG ++++ +VGK +SER E+ M + F N+Y+KN G+ +D
Sbjct: 155 AINKVNGMLLNEKKVFVGKFVPRSER--------ERMMGDKARLF--TNVYVKNFGEELD 204
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
D KLKE+F +G ITS +VM D +G S+G GFV+F P+ A +A+ E+N K + + K +Y
Sbjct: 205 DGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIY 264
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER + L+ +F Q++
Sbjct: 265 VGRAQKKAERLSDLKRKFEQLK 286
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD T+ L + F + G + S V RD +S + +VNF DA +A++
Sbjct: 12 SLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + +R + +Q+ + G N++IKNL ID++ +
Sbjct: 72 MNFEPLKNRPMRIMWSQRDPSLRKSGVG----------------NVFIKNLHKDIDNKAI 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SC+V D G S+G GFV F T E A+ A+ ++NG ++ K ++V
Sbjct: 116 FDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFV 175
Query: 209 RKEER 213
+ ER
Sbjct: 176 PRSER 180
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 191/469 (40%), Positives = 271/469 (57%), Gaps = 53/469 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +QERE A +F N++VKN +E D+ L+++F E+G S
Sbjct: 146 MLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSV 205
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +G S+ FGFVNFE ++A KAV ++NGK R YVG+AQK++ER+ ELK +F
Sbjct: 206 KVMVDENGHSRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRF 265
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V+++QG+NLY+KNL D IDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 266 EQMKQERVNRYQGVNLYVKNLDDVIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 324
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q V + P
Sbjct: 325 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRISVLRNINGP---- 380
Query: 239 MYPPGPSGLGQQFLYGQAPPAI--IPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ 296
P P+ FL PAI P +A F + P +RP AP + P
Sbjct: 381 -VFPQPTNY---FL-----PAIPQSPTRASFYSPSTMAP-IRP--APRWTSYSPRSLCAF 428
Query: 297 QGQRPGG-RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM-LPV 354
P RR + +Q +P P +MQ ++G +M
Sbjct: 429 VVFLPATPRRSTSNISTVRQASTQVPRAGP------------HMQRV-VNIGTQTMGTGC 475
Query: 355 PVDMGAGIPRRDASVGQPM---------------PITALSTALANASPEQQRTLLGESLY 399
P G IP+ S P P+TA + LA+A P++Q+ +LG+ LY
Sbjct: 476 PGSPGQAIPQYKYSSAMPNAHQVMERAVHIQGQEPLTA--SMLASAPPQEQKQMLGDRLY 533
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
PL+ + A K+TGMLLE+D +E+L +LESPE+L +K+ EA+ L++
Sbjct: 534 PLIYGVHAQLAGKITGMLLEIDNSELLLMLESPESLHSKIEEAVAALQA 582
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 11/172 (6%)
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
T+ V+ D +G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + ERE E
Sbjct: 109 TLCRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAE 167
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L + + N+Y+KN + +DD+ L+ELFSEFG S KVM D +G S+G
Sbjct: 168 LGAR----------ALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRG 217
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
GFV F EEA +A+ MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 218 FGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMK 269
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 196/502 (39%), Positives = 280/502 (55%), Gaps = 70/502 (13%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ + +R V P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVP-NPVIN 398
Query: 235 PRMP-------------------MYPPG--------PSGLGQ---QFLYGQAPPAIIP-- 262
P P YPP P Q + P AI P
Sbjct: 399 PYQPAPPSGYFMAAVPQTQNHAAYYPPSQIAQLRPSPCWTAQGARPHPFQNKPSAICPAA 458
Query: 263 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 322
P+ F MRPA + +P V+S + G P P +
Sbjct: 459 PRVPFS-------TMRPASSQVPR----VMSTQRVANTSTQTVGPRPAAAAAAATPAV-- 505
Query: 323 QMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 381
+ PR Y+Y G RN Q ++ + + +V T ++
Sbjct: 506 RTVPR---YKYAAGVRNPQQH-------------LNAQPEVTMQQPAVHVQGQETLTASM 549
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA+A P++Q+ +LGE L+PL+E + A K+TGMLLE+D +E+LH+LESPE+L +KV E
Sbjct: 550 LASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDNSELLHMLESPESLGSKVDE 609
Query: 442 AMEVLRSVAQQQANNPADQLAS 463
A+ VL++ ++A A A+
Sbjct: 610 AVAVLQAHQAKEATQKAVNSAT 631
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKRKFEQMK 284
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 279/471 (59%), Gaps = 30/471 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+++ +VFVGHF ++ERE A +F NV++KN E + L +IFG +G S
Sbjct: 152 IVLKSLKVFVGHFKSRKERELELGARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSV 211
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFV++ +DA +AV+ +NGK+ + R YVG+AQKK ER+ ELK F
Sbjct: 212 KVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHF 271
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ V ++QG+NLY+KNL D+IDDE+L+ FS FGTITS KVM + G S+G GFV
Sbjct: 272 EQIKQDRVTRYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVMME-GGHSRGFGFVC 330
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS P+EA++A+ EMNGK++ SKPLYVA+AQRKEER+A L Q+ + + P P
Sbjct: 331 FSAPDEAAKAVTEMNGKLVTSKPLYVALAQRKEERQAHLTNQYMRRMANIQTFANPVLNP 390
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR------PAGAPMPNFFVPVV 292
+ P S +++ P + + + Y Q VP +R P G +P F P V
Sbjct: 391 YHQPTSSS---RYIMTTVPSSQT-RTSYYPYGQ--VPQLRTSSHWGPPGGRLPPF--PTV 442
Query: 293 SQGQQGQRPG-----GRRGAGPV--QQTQQPLPIMPHQM--PPRGHAYRYPLGRNMQDFP 343
S + + P R +GPV T Q + P+Q+ PPR P R +Q +
Sbjct: 443 SGVVRPKTPRPPFNPMRSASGPVPRMMTTQRVVNPPNQVFGPPRPPF--IPNLRAVQQYK 500
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 403
+ G + + M IP+ +TA + LA+A P++Q+ +LGE L+PL++
Sbjct: 501 YAAGVRNPKRFELPMQINIPQPAVHAAAQEVLTA--SMLADALPQEQKQMLGERLFPLIQ 558
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+ A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 559 VMHPALAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQVKEA 609
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNL++S + L F +G I S V+ D +G SK +GFV+FE
Sbjct: 79 QRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDENG-SKGYGFVHFE 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG + +VG + + ERE EL + + N+YIK
Sbjct: 138 TQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARAREFT----------NVYIK 187
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D+ +L E+F FG S KVM D G SKG GFV+++T E+A RA+ EMNGK +
Sbjct: 188 NFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKEL 247
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER+ L+ F Q++
Sbjct: 248 NGRRIYVGRAQKKGERQTELKRHFEQIK 275
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ + DA + +E
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SID+ L
Sbjct: 63 MNLDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLEKSIDNRAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A +A+ +MNG ++ S ++V +
Sbjct: 107 FDAFSGFGNILSCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFK 165
Query: 209 RKEERRARLQAQ 220
++ER L A+
Sbjct: 166 SRKERELELGAR 177
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 194/481 (40%), Positives = 284/481 (59%), Gaps = 46/481 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YGTITS
Sbjct: 162 MLLNGKKVYVGKFISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE+ + A +AV LNGK+ + + YVG+AQKK+ER+QELK +
Sbjct: 222 KVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSVKVMME-DGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMG--- 230
FS EEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q +R MG
Sbjct: 341 CFSLAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYLQRVANIRMQHMGQVF 400
Query: 231 ----------PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ---AGFGYQQQLVPGM 277
P++P Y GP+ + Q + P + P AG + P
Sbjct: 401 QAGGAGSYFVPTLPQPQRFY--GPAQMAQIRTTPRWPAQPVRPNAQAAGSNFATMQTPFR 458
Query: 278 RPAGAPMPNFFVPVVSQGQQGQRP-GGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRY 333
AP +++ RP G++ GA +Q P + + P+ Y
Sbjct: 459 AAPRAPTAQ---SSMARNALSARPITGQQAVPGAANMQNRSMAGPAVG--VSPQSRTSNY 513
Query: 334 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
NM++ P M + P ++ + P+TA + LA+A P++Q+ +
Sbjct: 514 KYTANMRNPPQTMAMPAQTPA---------QQAVHIQGQEPLTA--SMLADAPPQEQKQM 562
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +Q
Sbjct: 563 LGERLFPLIQCMYPHLTGKITGMLLEIDNSELLHMLEHGESLKAKVEEAVAVLQAHQAKQ 622
Query: 454 A 454
A
Sbjct: 623 A 623
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE + A K+++ +
Sbjct: 100 NVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRV 159
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN G+ + D+KLK
Sbjct: 160 NGMLLNGKKVYVGKFISRKEREKELG---EKAKLFT-------NVYVKNFGEDMTDDKLK 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQ 208
E+F ++GTITS KVM G S+G GFVAF P A RA+A++NGK I K +YV AQ
Sbjct: 210 EMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQ 269
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F Q++
Sbjct: 270 KKAERQQELKRKFEQLK 286
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDIIKGRPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SC+V +D SG SKG GFV F T E A++++ +NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 SRKEREKEL 184
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 261/465 (56%), Gaps = 44/465 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NG++ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPVLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG PP I P + Q RP+ +P
Sbjct: 400 FQQPASYFLPAVPQPPAQAQYYGSGPP--IQPAPRWTAQPP-----RPSCDRLPARV--- 449
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS- 350
RR PV ++Q MPH +P H R P G +
Sbjct: 450 -----------SRRPLAPVGSSRQLSTHMPHLVP---HTQRVANIGTQTIGPSVTGCSTP 495
Query: 351 -------MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 403
P + V P+TA + LA A +Q+ ++GE L+PLV
Sbjct: 496 SRPLLTHKYSTPAHCTDRVQEPAVCVLGQEPLTA--STLAAAPLHEQKQMIGERLFPLVY 553
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 554 NVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 598
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQN 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREVELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ MNG+ + + LYV
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A A++ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER L A+
Sbjct: 175 SRREREVELGAR 186
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 195/481 (40%), Positives = 265/481 (55%), Gaps = 57/481 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER++ + KF N+F+KNL+ T +DL+ +F +G I SA
Sbjct: 208 MLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSA 267
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ DG SK F FVN+ D A KAV+ LN K+ + ++ YVG+AQK++ER++EL+
Sbjct: 268 ALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMH 327
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLY+KN+ D DD++L+ F GTITS KVMRD G S+G GFV
Sbjct: 328 EERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVC 387
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS P+EA+RA+ EMNGKMI +KPLYV++AQ+KE RR L++Q Q + +
Sbjct: 388 FSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRNAQRLQYAA----- 442
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+GLG Y QAP P M P G PM VV G G
Sbjct: 443 -----ANGLGGPQGYMQAP--------------MYYPPMGPYGGPMMPVRGGVV--GYPG 481
Query: 299 QRP--GGRRGAGPVQ-QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV- 354
P G R G P Q P+P+ MPP G YP M ++P + P
Sbjct: 482 APPMMGARPGRYPPSGQPGAPVPM--GYMPPGGAGGNYP---GMPNYPVRPAGNARPPTA 536
Query: 355 ------PVDMGAGIPR-----------RDASVGQPMPITALSTALANASPEQQRTLLGES 397
P G+PR A+ GQP +TA ALA ASP +Q+ +LGE+
Sbjct: 537 ARPNGSPSGAQQGLPRGQVPARPQGDGAQAAAGQPR-LTA--QALARASPGEQKQMLGEA 593
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
+YPL+ + + + A K+TGMLLEMD E+LHL+ESP AL KV EA+ VL + P
Sbjct: 594 IYPLIHESQPELAGKITGMLLEMDNAELLHLVESPAALTEKVDEALRVLEDWGKNDEEKP 653
Query: 458 A 458
A
Sbjct: 654 A 654
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+ ++ L F +G I S V D +G S+ F FV++E
Sbjct: 134 QRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYE 193
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++++NG +D++ YVG K ER+ +++ EQ K T N++IK
Sbjct: 194 TGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVE---EQRAKFT-------NIFIK 243
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + L+++F FG I S + G+SKG FV ++T + A +A+ E+N K I
Sbjct: 244 NLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEI 303
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYV AQ++ ER L+ + R
Sbjct: 304 NGKKLYVGRAQKRAERDEELRRMHEERR 331
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + + Q + A+++T QG N++IKNL D ID++ L
Sbjct: 118 LNYSLIKNRPCRI------------MWSQRDPALRKT---GQG-NIFIKNLDDKIDNKAL 161
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV + T E A A+ +NG ++ K +YV
Sbjct: 162 HDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHI 221
Query: 209 RKEERRARLQAQ 220
K+ER+++++ Q
Sbjct: 222 SKKERQSKVEEQ 233
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 189/492 (38%), Positives = 271/492 (55%), Gaps = 78/492 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ------------------- 272
P P P Q YG P + P Q + Q
Sbjct: 400 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRP 457
Query: 273 --LVPGMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 326
+ +R A +P VP V + G Q PGG P + P++P++
Sbjct: 458 PAHISSVRQASTQVPR-MVPHTQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSS 510
Query: 327 RGHA-YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 385
H+ YR + IP ++ P+TA + LA A
Sbjct: 511 AAHSTYRVQ----------------------EPAVHIPGQE-------PLTA--SMLAAA 539
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ V
Sbjct: 540 PLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAV 599
Query: 446 LRSVAQQQANNP 457
L+ A Q P
Sbjct: 600 LQ--AHQAVEQP 609
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 194/499 (38%), Positives = 276/499 (55%), Gaps = 93/499 (18%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 393
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ + QF P AG GY VP + P P + + +Q
Sbjct: 394 -----ANAILNQF----------QPAAG-GY---FVPAV-----PQPGPWSASLVSDEQC 429
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM----------------QDF 342
P G +G + P P + H + P G+A P R + DF
Sbjct: 430 LSPPGFQGMPSAIRQSGPRPTLRH-LAPTGNA---PASRGLPTTTQRVGSECPDRLAMDF 485
Query: 343 PFDMGAGSMLPVPVDMGAGIP-----------------------RRDASVGQPMPITA-- 377
A L G G+P + +SV P P
Sbjct: 486 GGAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAPAPRAVAPYKYASSVRSPHPAIQPL 545
Query: 378 --------------LSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
L+ ++ A+P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D
Sbjct: 546 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 605
Query: 423 TEVLHLLESPEALKAKVAE 441
+E+LH+LESPE+L++KV+E
Sbjct: 606 SELLHMLESPESLRSKVSE 624
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 265/459 (57%), Gaps = 28/459 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+++F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A M V
Sbjct: 400 FQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVP 454
Query: 292 VSQGQQ--GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
R + V TQ+ I P G P GR + A
Sbjct: 455 RRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAH 513
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
S V + IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 514 STYRVQ-EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQL 563
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 564 AGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L+ELFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 272/478 (56%), Gaps = 77/478 (16%)
Query: 6 KQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
K V+VGH + K++R++ +K KF NV+VKN+D ++ + +++F ++G +TS + D
Sbjct: 222 KHVYVGHHVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVD 281
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 123
+GKS+ FGFVN+EN +DAA+AVE L+ ++ DR+ YV +AQKK ERE+EL+ Q+EQA
Sbjct: 282 ENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKL 341
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
+ ++K+ G+NL++KNL D IDDE+L++ FS +GTITS K+M D +G SKG GFV FS+P+
Sbjct: 342 DKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPD 401
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-------QMRPVAMGPSVPPR 236
EA++A+ EMN +M+ KPLYVA+AQRK+ RR++L++Q + Q + A G S
Sbjct: 402 EATKAITEMNQRMVSGKPLYVALAQRKDVRRSQLESQINARNQLRIQQQAAAAGMSPQYG 461
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
MP P YGQ P +P P G +P +PA P +VP
Sbjct: 462 MPGAP---------MFYGQGPTGFMPAGPMTDRG-----MPFPQPAMVPSRPRWVP---- 503
Query: 295 GQQGQRPGG------------------------RRGAGPVQQTQQPLPIMPHQMPP-RGH 329
QQ +P G R G P Q P+MP M P G
Sbjct: 504 -QQSGQPNGQAISQIYPGMSGYNAYLAIQGRSQRSGQVPRPQGIPSRPMMPMAMRPLLGS 562
Query: 330 AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
Y +G N ++ D +D+G+ + +LA ASPE
Sbjct: 563 TRMYRVGSNTRNGTKD---------GIDVGS-------------DDLLTAASLAAASPEN 600
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ +LGE LYP V+ E A K+TGMLLEMD +E+LHL+E AL+AKV EA+ VL+
Sbjct: 601 QKQMLGEVLYPKVQAQEPGFAGKITGMLLEMDNSELLHLIEDDVALRAKVEEALIVLK 658
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 20/201 (9%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT NVF+KNLD S ++ L F +G+I S V D G SK +GFV+++ ++ A
Sbjct: 160 KTGTGNVFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEA 219
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ + YVG K +R+ + K + N+Y+KN+ I
Sbjct: 220 AIKHV----------YVGHHVSKKDRQSKFDDM----------KLKFTNVYVKNIDPEIS 259
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ + +ELF +FG +TS + D +G S+G GFV + E+A+RA+ E++ + LYV
Sbjct: 260 EAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYV 319
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ Q +
Sbjct: 320 CRAQKKHEREEELRKQYEQAK 340
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 36/202 (17%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N+ D V
Sbjct: 72 SLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSD----VNL 127
Query: 89 LNGKKFDDREWYV---GKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
L G++ D Y GK + S+R+ L+ K N++IKNL SI
Sbjct: 128 LTGERALDELNYTLIKGKPCRIMWSQRDPSLR------------KTGTGNVFIKNLDASI 175
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
D++ L + F+ FG+I SCKV D G SKG GFV + T E A A+ K +Y
Sbjct: 176 DNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAI----------KHVY 225
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V K++R Q++F M+
Sbjct: 226 VGHHVSKKDR----QSKFDDMK 243
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 270/470 (57%), Gaps = 34/470 (7%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ER E A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G+S+CFGFVNFE ++A KAV +NGK+ R Y +AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A M PV
Sbjct: 400 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASMVR--PPV 452
Query: 292 VSQGQQGQRPGGRRGAG----PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG 347
+ + R+ + V TQ+ I P G P GR + +
Sbjct: 453 MPRCPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPYKCSSA 511
Query: 348 AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 407
A S V + IP + P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 512 AHSTDQVQ-EPAVHIPGHE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHT 561
Query: 408 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 562 QLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ--AHQAVEQP 609
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ER EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRRERAAELGA---RALEFT-------NIYVKNLPADVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
+ AQ++ ER+ L+ +F QM+
Sbjct: 264 SRAQKRVERQNELKRKFEQMK 284
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G+I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRRERAAELGAR 186
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 189/492 (38%), Positives = 270/492 (54%), Gaps = 78/492 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ------------------- 272
P P P Q YG P + P Q + Q
Sbjct: 400 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRP 457
Query: 273 --LVPGMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 326
+ +R A +P VP V + G Q PGG P + P++P++
Sbjct: 458 PAHISSVRQASTQVPR-MVPHTQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSS 510
Query: 327 RGH-AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 385
H YR + IP ++ P+TA + LA A
Sbjct: 511 AAHNTYRVQ----------------------EPAVHIPGQE-------PLTA--SMLAAA 539
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ V
Sbjct: 540 PLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAV 599
Query: 446 LRSVAQQQANNP 457
L+ A Q P
Sbjct: 600 LQ--AHQAVEQP 609
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 189/483 (39%), Positives = 272/483 (56%), Gaps = 76/483 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ------------------- 272
P P P Q YG P + P Q + Q
Sbjct: 400 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVMPRRP 457
Query: 273 --LVPGMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 326
+ +R A +P VP V + G Q PGG P + P++P++
Sbjct: 458 PAHISSVRQASTQVPR-MVPHTQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSS 510
Query: 327 RGHA-YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 385
H+ YR +Q+ + VP GQ P+TA + LA A
Sbjct: 511 AAHSTYR------IQE--------PAVHVP--------------GQE-PLTA--SMLAAA 539
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ V
Sbjct: 540 PLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAV 599
Query: 446 LRS 448
L++
Sbjct: 600 LQA 602
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 198/464 (42%), Positives = 277/464 (59%), Gaps = 50/464 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER+ K++F NVF+KNLD S DE K+I YG I SA
Sbjct: 189 MLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VV +D G S+ FGFVN++N ++AAKAVE+LN + D ++ + +AQKK+ERE+EL+ +
Sbjct: 249 VVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQKKNEREEELRRNY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+ G+NLY+KNL D DDE+L F FGTITS K+MRD G SKG GFV
Sbjct: 309 EQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRDEKGTSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM----GPSVP 234
FS+P+EA++A++E++GKMI SKPLYV++AQR++ RR +L++Q +Q + + VP
Sbjct: 369 FSSPDEATKAVSELSGKMIGSKPLYVSLAQRRDVRRQQLESQIAQRNQLRLQHQAAAGVP 428
Query: 235 -----PRMPMY--PPGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPN 286
P PMY PP + G + +YGQ P PP+ G+ QQ VPGM
Sbjct: 429 ISGFMPGAPMYYQPPPGAYPGGRSMYGQ--PGFAPPRPRGYPAGQQ-VPGMPIPSP---- 481
Query: 287 FFVPVVSQGQQGQRPGGRRGAGPVQ----QTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
QG P R A P + Q Q P + P + P G
Sbjct: 482 -----YGPPPQGYMPANYRPARPARANGAQVQGGSPTANNVRPAVPASGPRPAG------ 530
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
+PV GA P + + G P++A + LANA P +Q+ +LGE+LYP +
Sbjct: 531 ---------VPVRPAQGAAKPAKQEAGG---PLSA--SVLANAPPAEQKQMLGEALYPKI 576
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
++ + A K+TGMLLEM+ +E+L LLE+ EALK+KV EA+ VL
Sbjct: 577 FNIQPELAGKITGMLLEMENSELLFLLENEEALKSKVDEAIAVL 620
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE+ ++ L F +G + S V D +G S+ +GFV++E
Sbjct: 115 QRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNSRGYGFVHYE 174
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A+ A++ +NG +D++ YVG K ER+ ++ Q K Q N++IK
Sbjct: 175 NGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQ----------KSQFTNVFIK 224
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL S+DDEK K++ +G I S V +D G S+G GFV + EEA++A+ +N +
Sbjct: 225 NLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEV 284
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++ A AQ+K ER L+ + Q +
Sbjct: 285 DGKKIFAARAQKKNEREEELRRNYEQAK 312
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 17/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ N D +A+E
Sbjct: 39 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQ 98
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 99 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEAIDNKAL 142
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D +G S+G GFV + E AS A+ +NG ++ K +YV
Sbjct: 143 HDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHV 202
Query: 209 RKEERRARLQAQFSQMRPV 227
K+ER+A++ Q SQ V
Sbjct: 203 SKKERQAKIDEQKSQFTNV 221
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 188
Q +LY+ L ++ + L E+F+ G + S +V RD + S G +V + ++ RA
Sbjct: 36 QSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERA 95
Query: 189 LAEMNGKMIVSKPLYVAVAQR 209
L ++N +I ++ + +QR
Sbjct: 96 LEQLNYSLIKNRACRIMWSQR 116
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 185/465 (39%), Positives = 265/465 (56%), Gaps = 40/465 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q P P+
Sbjct: 400 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---------PPRPS----- 443
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS- 350
RR + +Q +PH +P H R P +G +
Sbjct: 444 -CASVVRPPVVPRRPPAHISSVRQASTQVPHTVP---HTQRVANIGTQTTGPSGVGCCTP 499
Query: 351 ---MLPVPVDMGAGIPRR--DASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVE 403
+LP A R + +V P P+TA + LA A +Q+ ++GE LYPL+
Sbjct: 500 GRPLLPYKCSSAAHSTYRVQEPAVHIPGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIH 557
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 558 DVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 270/470 (57%), Gaps = 34/470 (7%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ER E A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G+S+CFGFVNFE ++A KAV +NGK+ R Y +AQK+ ER+ ELK +F
Sbjct: 221 KVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD KL++ FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRVSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A M PV
Sbjct: 400 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASMVR--PPV 452
Query: 292 VSQGQQGQRPGGRRGAG----PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG 347
+ + G R+ + V TQ+ I P G P GR + +
Sbjct: 453 MPRCPPAHIGGIRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPYKCSSA 511
Query: 348 AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 407
A S V + IP + P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 512 AHSTDQVQ-EPAVHIPGHE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHT 561
Query: 408 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP 457
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+ A Q P
Sbjct: 562 QLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ--AHQAVEQP 609
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ER EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRRERAAELGA---RALEFT-------NIYVKNLPADVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
+ AQ++ ER+ L+ +F QM+
Sbjct: 264 SRAQKRVERQNELKRRFEQMK 284
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G+I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRRERAAELGAR 186
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 264/459 (57%), Gaps = 28/459 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A M V
Sbjct: 400 FQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVP 454
Query: 292 VSQGQQ--GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
R + V TQ+ I P G P GR + A
Sbjct: 455 RRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAH 513
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
S V + IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 514 STYRVQ-EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQL 563
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 564 AGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 201/487 (41%), Positives = 275/487 (56%), Gaps = 59/487 (12%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ER E + K KFNNV+VKN E DE L+ +F YG I SA
Sbjct: 166 MLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISA 225
Query: 59 VVMRDGDGKSKCFGF-VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
VM D V+FE+ + A KAVEALNG + YVG+AQKK ER+ ELK +
Sbjct: 226 KVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEK 285
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ E ++++QG+NLY+KNL D+IDDE+L++ F++FGTITS KVM + G SKG GFV
Sbjct: 286 FERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTE-GGRSKGFGFV 344
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM---GPSVP 234
FS+PEEA++A+ EMNG+++V+KPLYVA+AQRKE+R+A L +Q+ Q R +M G +
Sbjct: 345 CFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLASQYMQ-RITSMRMQGQQIG 403
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPAIIP--PQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 292
M+ PG +G +P PQA Y P PA P + V
Sbjct: 404 QVSQMFQPGSAGY------------FVPTMPQAQRTY---FTPNNMPAMRSNPRWQTTVR 448
Query: 293 SQGQQG--------------QRPGGRRG------AGPVQQTQQPLPIMPHQMP------- 325
GQ G QRP G+ A P+ Q P +MP
Sbjct: 449 PTGQPGSGFQTMPGAPQIRQQRPTGQTNVRAGVSARPI-TGQSGTPNAQQRMPVNQQVGG 507
Query: 326 -PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGI---PRRDASVGQPMPITALSTA 381
P+G P N Q G G M+ G+ P + V P+TA T
Sbjct: 508 RPQGGQPTVPAAANRQQGYKSYGGGQMMKQQPGQTPGMQQAPPQAVIVQGQDPLTA--TM 565
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA A P++Q+ +LGE L+PL+ + D A K+TGMLLE+D +E+LH+LES E+L+AKV E
Sbjct: 566 LATAPPQEQKQMLGERLFPLISTMFPDLAGKITGMLLEIDNSELLHMLESQESLEAKVKE 625
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 626 AVAVLQA 632
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 118/202 (58%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S ++ D G S+ +GFV+FE + A
Sbjct: 100 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARI 158
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ +VG+ + ER + + + + KF N+Y+KN + I+
Sbjct: 159 AIEKVNGMLLNGKKVFVGRFMSRRER--------LEVLGDKMRKFN--NVYVKNFSEEIN 208
Query: 145 DEKLKELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
DE L+++F +G I S KVM D SG KG GFV+F PE A +A+ +NG K LY
Sbjct: 209 DETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILY 268
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+A L+ +F ++R
Sbjct: 269 VGRAQKKIERQAELKEKFERIR 290
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 77 MNFDTIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 120
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK++ D G S+G GFV F T E A A+ ++NG ++ K ++V
Sbjct: 121 YDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVG--- 176
Query: 209 RKEERRARLQAQFSQMR 225
R RR RL+ +MR
Sbjct: 177 RFMSRRERLEVLGDKMR 193
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 262/459 (57%), Gaps = 47/459 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ A+K F NV++KNLD T+++ +FG++G ITS
Sbjct: 231 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 290
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+++D + K + FGFVN+ N + A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++
Sbjct: 291 SLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRY 350
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++K+QG+NL+IKNL D +DDE+LK FS FGTITS K+M D G SKG GFV
Sbjct: 351 EQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVC 410
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
++TPEEA++A+ EMN +M+ KPLYVA+AQRKE RR++L+AQ +Q R
Sbjct: 411 YTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFR---------- 460
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
L QQ PA+ +G L+ G P G P +P G
Sbjct: 461 -----------LQQQVAAAAGIPAV-----QYGATGPLIYG--PGGYP-----IPAAVNG 497
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
+ G G P+ P MP Q P G A YP G N + G M+P
Sbjct: 498 RGMPMVPGHNGPMPM------YPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGS 550
Query: 356 VDMGAGIPRRDASVGQP-MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
V AG +A P MP + LA E ++ +LGE LYP V E + K+T
Sbjct: 551 VP-SAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKIT 609
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
GMLLEM +E+L LLE AL +V EA+ VL+ Q+
Sbjct: 610 GMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFVDQE 648
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG + ER+ ++ +A+K N+YIKNL I +++
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKV-----EALKANF-----TNVYIKNLDTEITEQEFS 278
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ ++ QM+
Sbjct: 339 KHEREEELRKRYEQMK 354
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N +D KA++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 141 LNYTLIKGRPCRI----MWSQRDPSLR------------KMGTGNVFIKNLDPAIDNKAL 184
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G +KG GFV F + E A+ A+ +NG ++ K +YV
Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHV 244
Query: 209 RKEERRARLQA 219
+ ER+++++A
Sbjct: 245 SRRERQSKVEA 255
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 192/480 (40%), Positives = 269/480 (56%), Gaps = 43/480 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ +K +F N+++KNLD T E+ ++F YG +TS+
Sbjct: 193 MLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSS 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+V D +GKSK FGFVN+E ++A +AV+ L+ ++ +V +AQKK+ERE EL+ +
Sbjct: 253 LVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D DD+KL+ F FG ITSCKVMRD G SKG GFV
Sbjct: 313 EQAKLEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVC 372
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KMI +KPLYV++AQR+E RR +L++Q +Q + M + +P
Sbjct: 373 FSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGVP 432
Query: 239 -MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV----PVVS 293
Y GP Y P + GY Q PGM P PN V PV
Sbjct: 433 GGYINGP------MYYPPGPGFPPQGRGMMGYGQ---PGMMPPRIRYPNGQVPSMPPVPG 483
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPL-------PIMPHQMPPRGHAYRYPLGRNMQDFPFDM 346
QG +P G G P + P+ P P PR + P G + P
Sbjct: 484 PYGQGPQPYGMPGYPPRGAPRPPVARGPGSSPTHPSVPMPRANG-PAPNGGAARPAPQGA 542
Query: 347 GAGSML------------------PVPVDMGAGIPRRDASVGQPMPITALST-ALANASP 387
AGS P GA + + A+ Q + L+ LA ASP
Sbjct: 543 PAGSRAPPPGAPAPGRAPQPAYNKPQARPQGAPVTAQPAAAPQQSSLPNLTADQLAAASP 602
Query: 388 EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
+Q+ +LGE +Y + + + A K+TGMLLEMD E+L LL+S EA+ AKV EA VL+
Sbjct: 603 MEQKQMLGEVIYMRIVPSQPELAGKITGMLLEMDNNELLALLDSEEAMNAKVQEANTVLQ 662
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLDE+ ++ L F +G + S V D G+SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++++NG +D++ YVG + ER+ E+K QF NL
Sbjct: 179 TAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQF-------------TNL 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL + E+ ELF+ +G +TS V D G SKG GFV + EEA RA+ E++
Sbjct: 226 YIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHD 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ K L+VA AQ+K ER L+ + Q +
Sbjct: 286 TDLKGKKLFVARAQKKAEREDELRRSYEQAK 316
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 43 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 103 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NVFIKNLDEAIDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 147 HDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHI 206
Query: 209 RKEERRARL---QAQFSQM 224
++ER+++L +AQF+ +
Sbjct: 207 SRKERQSKLDEMKAQFTNL 225
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 277/484 (57%), Gaps = 39/484 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPP 235
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q M V P+ PP
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFF 288
P Y + A + P + Q Q +RP GAP F
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFS 458
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNM 339
+ Q + +R A QT P P + PR Y+Y G RN
Sbjct: 459 TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNP 515
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLY 399
Q +M + V + GQ T ++ LA+A P++Q+ +LGE L+
Sbjct: 516 QQHRNAQPQVTMQQLAVHVQ----------GQE---TLTASRLASAPPQKQKQMLGERLF 562
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 459
PL++ + A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 563 PLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAV 622
Query: 460 QLAS 463
A+
Sbjct: 623 NSAT 626
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ F QM+
Sbjct: 264 GRAQKKVERQTELKRTFEQMK 284
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SI+++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLDKSINNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ S FG I SC V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 204/508 (40%), Positives = 271/508 (53%), Gaps = 85/508 (16%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV +E + A AV+ALNGK D + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ + G+NLY+KNL DSIDDE+L++ FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
F +P EA+ A+ E+NG++I SKPLYVA+AQRKEER+A L +Q+ MR + G +
Sbjct: 333 CFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLG 389
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG-------------YQQQLVPGMRPAGA-- 282
++PP +G G P + P Q FG QQQ MRPA A
Sbjct: 390 QLFPPNTAG-------GFFVPTMTPSQRFFGPQITTPMRSTPRWAQQQ----MRPATAVQ 438
Query: 283 ------------------PMPNFFVPVVSQGQQGQRPGGRRGAGP-VQQTQQPLPIMPHQ 323
VP Q Q G RG P VQ T
Sbjct: 439 SVQAGAASAAGAAAVGGFQGAAGAVPT----QFRQSGAGARGTQPQVQGTHAAAAAAAAA 494
Query: 324 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV-------------- 369
R R G+ + A +M + G +R AS
Sbjct: 495 NNMRSSGARAITGQQ------SVAAPNMQIAGAQIAGGAQQRAASYKYTSNMRNPPVQQM 548
Query: 370 --GQPMPI--------TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
QP+P +++ LANA P++Q+ +LGE LYP++E++ A K+TGMLLE
Sbjct: 549 QQAQPLPSQLQGKNQEKLIASLLANAKPQEQKQILGERLYPMIERMHATLAGKITGMLLE 608
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLR 447
++ +E+LH+LE EALKAKV EA+ VL+
Sbjct: 609 IENSELLHMLEDQEALKAKVEEAVAVLQ 636
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD++ ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVA+ T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N D+ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLIRDKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 189/492 (38%), Positives = 276/492 (56%), Gaps = 54/492 (10%)
Query: 3 INDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
+ND +VFVG F ++ERE A +F NV++KN E DE LK +FG++G S V
Sbjct: 163 LNDCKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKV 222
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ
Sbjct: 223 MTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++ + ++Q +NLY+KNL D+IDDE+L++ FS FGTITS KVM + G SKG GFV FS
Sbjct: 283 MKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFS 341
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR---PVAMGPSVPPRM 237
+PEEA++A+ EMNG+++ ++PLYVA+AQRKEER+A L ++ Q + P P + P
Sbjct: 342 SPEEATKAVTEMNGRIVATEPLYVALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQ 401
Query: 238 PMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQQ------QLVPG--------- 276
P P G P + + + A + P + Q Q PG
Sbjct: 402 PAPPSGYFMAAVPQTQNRAAYHPPSQTAQLRPSPCWTAQGARPHPFQNKPGAIHPAAPRV 461
Query: 277 ----MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYR 332
MRPA + +P P + G R P P + H +P Y+
Sbjct: 462 PFNTMRPASSRVPRVMSPQRVANTSTKTVGPR----PAAAAAAATPAV-HTVP----RYK 512
Query: 333 YPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
Y +G RN Q ++ + + +V T + LA+A P++Q+
Sbjct: 513 YAVGVRNPQQH-------------LNAQPQVKMQQPAVHVQGQETLTAAMLASAPPKEQK 559
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE L+PL++ + A K+TGMLLE D +E+LH+LESPE+L +KV EA+ VL++
Sbjct: 560 QMLGERLFPLIQAMHPTLAGKITGMLLETDNSELLHMLESPESLCSKVDEAVVVLQAHQA 619
Query: 452 QQANNPADQLAS 463
++A A A+
Sbjct: 620 KEATQKAVNSAT 631
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G + S V+ D +G SK +GFV+F
Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFVHFG 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +D + +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGARAKEFP----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A AL MN +I KPL + +QR
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 277/484 (57%), Gaps = 39/484 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPP 235
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q M V P+ PP
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFF 288
P Y + A + P + Q Q +RP GAP F
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFS 458
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNM 339
+ Q + +R A QT P P + PR Y+Y G RN
Sbjct: 459 TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNP 515
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLY 399
Q +M + V + GQ T ++ LA+A P++Q+ +LGE L+
Sbjct: 516 QQHRNAQPQVTMQQLAVHVQ----------GQE---TLTASRLASAPPQKQKQMLGERLF 562
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 459
PL++ + A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 563 PLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAV 622
Query: 460 QLAS 463
A+
Sbjct: 623 NSAT 626
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ F QM+
Sbjct: 264 GRAQKKVERQTELKRTFEQMK 284
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SI+++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLDKSINNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ S FG I SC V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 186/456 (40%), Positives = 262/456 (57%), Gaps = 63/456 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + +++R++ A+K F NV++KN+D TDE+ +F ++G ITS
Sbjct: 230 MLLNDKKVYVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSF 289
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+++D GK + FGFVNFE+ + A KAV+ +N +F ++ YVG+AQK+ ERE EL+ ++
Sbjct: 290 SLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRY 349
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E + K+QG+NL+IKNL D +DD LK FS FGTITS KVM D +G SKG GFV
Sbjct: 350 EQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVC 409
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+PEEA++A+AEMN +M+ KPLYVA+AQRK+ RR++L+AQ M V
Sbjct: 410 YSSPEEATKAIAEMNQRMLAGKPLYVALAQRKDVRRSQLEAQIQARNQFRMQQQV----- 464
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+G+ QF IP +G P G P+P V
Sbjct: 465 ----AAAGMSAQFG--------IPGAMYYG----------PGGYPLPAGARGVPMPHPNM 502
Query: 299 QRPGGRR---GAGPVQQTQQP--LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 353
P G+ GA P QP +P+ YP G +FP G P
Sbjct: 503 MPPNGKWPVDGAAP-----QPGMVPV-------------YPPGVAAPNFP-----GYPRP 539
Query: 354 -VPVDMGAGIPRRDASVGQPMPITALS-TALANASPEQQRTLLGESLYPLVEQLERDAAA 411
VP + AG ++AS G +P+ A A + +PE Q+ +LGE YPL+ Q E + A
Sbjct: 540 VVPSEQPAG---QEASNG-AVPVPAFDMNAFSAETPENQKQILGEYFYPLIAQREAELAG 595
Query: 412 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
K+TGMLLEMD E+L L++ EAL KV EA+ VL+
Sbjct: 596 KITGMLLEMDNAELLGLVQDIEALNGKVDEALSVLK 631
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT N+F+KNLD + ++ L F +GTI S V D G SK +GFV+F + D A
Sbjct: 163 KTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANA 222
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D++ YVG + +R+ + +AMK N+YIKN+ +
Sbjct: 223 AIEHVNGMLLNDKKVYVGHHVSRRDRQSKF-----EAMKANF-----TNVYIKNIDPEVT 272
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+ LF +FG ITS +++D SG +G GFV F + E A +A+ EMN K LYV
Sbjct: 273 DEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYV 332
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER A L+ ++ QM+
Sbjct: 333 GRAQKRHEREAELRKRYEQMK 353
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 17/194 (8%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKA 85
K +++V LD S T+ L +IF G + S V RD + S + +VN+ NADD KA
Sbjct: 77 KNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKA 136
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
+E LN R + +Q+ + G N++IKNL +ID+
Sbjct: 137 LEELNYSLIKGRACRIMWSQRDPSLRKTGTG----------------NIFIKNLDPAIDN 180
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FGTI SCKV D G SKG GFV F++ + A+ A+ +NG ++ K +YV
Sbjct: 181 KALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVG 240
Query: 206 VAQRKEERRARLQA 219
+ +R+++ +A
Sbjct: 241 HHVSRRDRQSKFEA 254
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 264/465 (56%), Gaps = 63/465 (13%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K F NV+VKN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+ D A +
Sbjct: 167 KKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQ 226
Query: 85 AVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL DSI
Sbjct: 227 AVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSI 286
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
DDE+L++ F+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+KPLY
Sbjct: 287 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 345
Query: 204 VAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPA 259
VA+AQRKE+R+A L +Q+ Q MR MG ++ PG G G F+ P
Sbjct: 346 VALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-----PT 391
Query: 260 IIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG----------------QRPGG 303
I PQ +G Q P PN P G G +PG
Sbjct: 392 IPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGA 451
Query: 304 RR--------------GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
R G +Q P + R Y+Y NM++ P M
Sbjct: 452 MRSTLSARPITGQQTVGGANMQSRSMAGPAVGVSAQSRPSNYKYT--SNMRNPPQAMAIP 509
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
+ P PV I ++ P+TA + LA A P++Q+ +LGE L+PL++ +
Sbjct: 510 T--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQL 558
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 559 TGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 603
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 115/209 (55%), Gaps = 32/209 (15%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + ++ + N+Y+K
Sbjct: 148 TEEAANKSIDRVNGMLLNGKKLFT-------------------------------NVYVK 176
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 177 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 236
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 237 AEGKCMYVGRAQKKAERQQELKRKFEQLK 265
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K L+ V
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTNV 173
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN MI +P+ + +QR
Sbjct: 72 MNFDMIKGRPIRIMWSQR 89
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 272/477 (57%), Gaps = 49/477 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M++N K+V+VG F+ + ER + +F N++VKN + D+ L+ F +YG + SA
Sbjct: 163 MMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSA 222
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM D G S+ FGFV++E D A KA E +N + DD R YVG+AQKK+ER+ ELK +
Sbjct: 223 KVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAK 282
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ +E + ++QG+NLY+KNL +ID+E L++ FS+FGTITS KVM + +G SKG GFV
Sbjct: 283 FEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTE-NGRSKGFGFV 341
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG+++VSKPLYVA+AQRKE+R+A+L +Q+ Q R M RM
Sbjct: 342 CFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQYMQ-RMAGM------RM 394
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQA----GFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P P G + P P Q QQ P MRP G +P
Sbjct: 395 PAPQPNQMFQGSSYFMPSMQPRYFPSQMAQVRASPRWQQAAP-MRPGGQATAFQAMPAAG 453
Query: 294 Q---------------GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRN 338
Q + R P Q+ + M +Q P G+ Y
Sbjct: 454 SRFPAATAPRAAAAAVRQVAPQAMARTTQPPAQRMAGRVAAMANQQPRPGYKYT----AT 509
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
M++ P +M P V + GQ P+T ST LA A P++Q+ +LGE L
Sbjct: 510 MRNPPSGGQPQAMNPSAVHVQ----------GQE-PLT--STMLAAAPPQEQKQMLGERL 556
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQA 454
+PL++ D A K+TGMLLE+D E+LH+LES E+LKAKV EA+ VL++ A++QA
Sbjct: 557 FPLIQNSHPDLAGKITGMLLEIDNAELLHMLESRESLKAKVEEAVAVLQAHQAKEQA 613
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 123/209 (58%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ + F +G I S V +D G SK FGFV+FE
Sbjct: 89 QRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFE 148
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+ +NG + ++ YVG+ +SER AM E +F N+Y+K
Sbjct: 149 TQEAADEAMAKVNGMMLNGKKVYVGRFVPRSER--------LAAMGEAQKRF--TNIYVK 198
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD DD+KL++ F ++G + S KVM D G S+G GFV++ P+ A +A EMN +
Sbjct: 199 NFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEV 258
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER+A L+A+F +++
Sbjct: 259 DDGRRIYVGRAQKKAERQAELKAKFEKIK 287
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 21/191 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 13 SLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 72
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 73 MN---FDTIK---GKPMRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 114
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ + FS FG I SCKV +D +G SKG GFV F T E A A+A++NG M+ K +YV
Sbjct: 115 AIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGR 174
Query: 207 AQRKEERRARL 217
+ ER A +
Sbjct: 175 FVPRSERLAAM 185
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 204/493 (41%), Positives = 289/493 (58%), Gaps = 70/493 (14%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ERE + K K F NV+VKN E +D+ L+++F +YG ITS
Sbjct: 162 MLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV FE+ + A KAV +LNGK+ + + +VG+AQKK+ER+QELK +
Sbjct: 222 KVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRK 281
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KN+ D+IDDE+L++ F+ FGTITS KVM + G SKG GFV
Sbjct: 282 FEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTPFGTITSAKVMLE-DGRSKGFGFV 340
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS+ EEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q +R +G
Sbjct: 341 CFSSAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQKMANIRMQQIG--- 397
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ-----------LVPGMRPAGA 282
P++ P G F+ P PPQ FG Q P RP G
Sbjct: 398 ---QPVFQPSSGGY---FV----PTIPQPPQRFFGPAQMAQIRTATTRWPTQPQSRP-GT 446
Query: 283 PMPNFFVPVV------SQGQQGQRPGGRR-------GAGPVQQTQQPLPIMPHQMPP--- 326
P P + Q +P R G GP+ QTQ P P P MPP
Sbjct: 447 QQPQTAYPAIPGPFRPGPRPQAAQPALRSISARPITGGGPM-QTQIP-PRAP--MPPTVS 502
Query: 327 -----RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 381
R Y+Y NM++ P +G + P V + ++ P+T +T
Sbjct: 503 VNAAQRPTNYKYTA--NMRNPPQTLGHVAHQP-QVQQAVHVQGQE-------PLT--TTM 550
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA+A ++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LE E+LK+KV E
Sbjct: 551 LADAPLQEQKQMLGERLFPLISAMYSKLAGKITGMLLEIDNSELLHMLEHRESLKSKVEE 610
Query: 442 AMEVLRSVAQQQA 454
A+ VL++ +QA
Sbjct: 611 AVAVLQAHEAKQA 623
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 128/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + + +VGK + ERE+EL E+A + T N+Y+K
Sbjct: 148 TEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELG---EKAKRFT-------NVYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ D+ L+E+F ++G ITS KVM G SKG GFVAF PE A +A+A +NGK I
Sbjct: 198 NFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEI 257
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
V KPL+V AQ+K ER+ L+ +F Q++
Sbjct: 258 VEGKPLFVGRAQKKAERQQELKRKFEQLK 286
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD K S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ +
Sbjct: 72 MNYDPLKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG SKG GFV F T E A++++ ++NG ++ K ++V
Sbjct: 116 YDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 197/491 (40%), Positives = 275/491 (56%), Gaps = 59/491 (12%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVG F+ ++ERE + K K F NV+VKN E T+E L ++F +YG+ITS
Sbjct: 162 MLLNEKKVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSH 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FEN D A +AV+ LN K+ D + YVG+AQKK+ER+ ELK +
Sbjct: 222 RVMMK-DGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRR 280
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++ G+NLY+KNL D+IDDE+L++ F+ +GTITS KVM D G SKG GFV
Sbjct: 281 FEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFV 339
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS P+EA++A+ EMNG+++ SKPLYVA+AQRKEER++ L +Q+ Q +R +G
Sbjct: 340 CFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQRVNSLRMQHIGQVY 399
Query: 234 PPRMPMYPPGPSGLGQ-QFLYG-QAPPAIIPPQAGFGYQ------QQLVPGMRPAGAPMP 285
+ P + Q Q YG Q P+ Q Q V PAGA
Sbjct: 400 QQSGSYFMP---TIAQPQRFYGPQVAQVRTAPRWSANAQMRPNAANQSVAANAPAGAYQA 456
Query: 286 NFFVPVVSQG---QQGQRPGG------------------RRGAGPVQQTQ-----QPLPI 319
+ Q G GG R A P+ Q Q P+
Sbjct: 457 MSAAAHAANNQYRQAGNVRGGANQQAQNAQSAQATSAAMRNSARPITGQQPGANMQTRPV 516
Query: 320 MPHQMP--PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 377
P PR +Y+Y P +P+P+ + ++ V P+TA
Sbjct: 517 APQMTAAQPRPQSYKYTANMRNPQVP------QQVPIPLQQ---VNQQAVIVKGQEPLTA 567
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+ LA A P +Q+ +LGE L+PL+E + K+TGMLLE+D +E+LH+LE E+LKA
Sbjct: 568 --SMLAAAQPAEQKNMLGERLFPLIEAMHPQLTGKITGMLLEIDNSELLHMLEHHESLKA 625
Query: 438 KVAEAMEVLRS 448
KV EA+ VL++
Sbjct: 626 KVEEAVAVLQA 636
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 123/202 (60%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+ ++ + F +G I S V +D G+SK +GFV+FE + A
Sbjct: 95 KSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANT 154
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG ++++ +VG+ + ERE+EL E+A T N+Y+KN G+ +
Sbjct: 155 SIEKVNGMLLNEKKVFVGRFISRKEREKELG---EKAKLFT-------NVYVKNFGEDLT 204
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
+E L E+F ++G+ITS +VM G S+G GFVAF P+ A RA+ E+N K + K LY
Sbjct: 205 EEALHEMFEKYGSITSHRVMMK-DGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLY 263
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q++
Sbjct: 264 VGRAQKKNERQMELKRRFEQLK 285
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL ID++ +
Sbjct: 72 MNFDTIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKKIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D G SKG GFV F T E A+ ++ ++NG ++ K ++V
Sbjct: 116 YDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 SRKEREKEL 184
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 185/459 (40%), Positives = 263/459 (57%), Gaps = 28/459 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A +
Sbjct: 400 FQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASVVRPPAVP 454
Query: 292 VSQGQQ--GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
R + V TQ+ I P G P GR + A
Sbjct: 455 RRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAH 513
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
S V + IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 514 STYRVQ-EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQL 563
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 564 AGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 190/458 (41%), Positives = 266/458 (58%), Gaps = 44/458 (9%)
Query: 2 LINDKQVFVGHFL-RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
L+ND +V+VG F+ RK T + NVF+KN E TD L +F +YG+I SAVV
Sbjct: 167 LLNDMKVYVGKFIPRKDRSHTNGFNQHYTNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVV 226
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DG+G SK FGFV+FE+ + A+ AV+A++ + R+ Y G+AQKK+ER +EL + E+
Sbjct: 227 MKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYCGRAQKKNERSRELMRRKEE 286
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+E + ++QG+NLYIKNL D++ +EKLK FS+FG+ITS K+M D G SKG GFV FS
Sbjct: 287 QRQERLSRYQGVNLYIKNLEDTLGEEKLKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFS 346
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP-RMPM 239
+PEEA++A+ EMNG+++VSKPLYVA+AQRKEER+A L AQ +M+ +A G +P +M M
Sbjct: 347 SPEEATKAVTEMNGRIVVSKPLYVALAQRKEERQAHLAAQ--RMQRIARG--IPQGQMQM 402
Query: 240 YPPGPS-GLGQQ--FLYGQAPPAIIPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPV 291
YPP G+ Q F A P G + G A P P+
Sbjct: 403 YPPYYMPGIQNQRPFFTAMAAGYTARPWQGGPMHRPFSGGYNMHHRTRANVPRPSVGGAG 462
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ-MPPRGHAYRYPLGRNMQDFPFDMGAGS 350
+ GQ+ P QTQ+ I P Q + P+G P G F GA
Sbjct: 463 GAGGQRMNTP----------QTQR---IAPQQRLNPQGR----PGGVQQTKLQFSAGA-- 503
Query: 351 MLPVPVDMGAGIPRRDASVGQ-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
+ G +GQ P P++ LS P +++ ++GE LY + D
Sbjct: 504 -----RNQPGGPMGGGMDLGQDPEPLSTLS----QTDPMKRKQIIGEHLYRAISASHPDK 554
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
A K+TGMLLEMD +E+LH+LE+PE+L +KV EA+ VLR
Sbjct: 555 AGKITGMLLEMDNSELLHMLEAPESLNSKVEEAVNVLR 592
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 109/200 (54%), Gaps = 11/200 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+S + L F +G I S V DG+ SK FGFV+F+
Sbjct: 92 QRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVATDGNRHSKGFGFVHFD 151
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NGK +D + YVGK + +R F Q N++IK
Sbjct: 152 EQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSH--TNGFNQHYT---------NVFIK 200
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ D L ++F ++G+I S VM+D G+SKG GFV+F + E AS A+ ++ ++
Sbjct: 201 NFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIV 260
Query: 198 VSKPLYVAVAQRKEERRARL 217
+ +Y AQ+K ER L
Sbjct: 261 NGRQVYCGRAQKKNERSREL 280
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L +++ L E FS+ G + S +V RD + S G +V F P +A RAL
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN + I +P + +QR
Sbjct: 76 MNYEPIKGQPCRIMWSQR 93
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 193/484 (39%), Positives = 277/484 (57%), Gaps = 39/484 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+M D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 ELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPP 235
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q M V P+ PP
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFF 288
P Y + A + P + Q Q +RP GAP F
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFS 458
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNM 339
+ Q + +R A QT P P + PR Y+Y G RN
Sbjct: 459 TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNP 515
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLY 399
Q +M + V + GQ T ++ LA+A P++Q+ +LGE L+
Sbjct: 516 QQHRNAQPQVTMQQLAVHVQ----------GQE---TLTASRLASAPPQKQKQMLGERLF 562
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 459
PL++ + A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 563 PLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAV 622
Query: 460 QLAS 463
A+
Sbjct: 623 NSAT 626
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S ++M D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ F QM+
Sbjct: 264 GRAQKKVERQTELKRTFEQMK 284
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SI+++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLDKSINNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ S FG I SC V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 190/485 (39%), Positives = 273/485 (56%), Gaps = 54/485 (11%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+L+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 62 LLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 121
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKS+ FGFV++E +DA KAV+ +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 122 KVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 181
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 182 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 240
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----------------S 222
F + EEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ +
Sbjct: 241 FPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHVAGLRALPAGAILN 300
Query: 223 QMRPVAMGPSVPP------RMPMYPPG------PSGLGQQ--FLYG-QAPPAIIP---PQ 264
Q +P A G VP R P Y P P+ QQ L G Q P+ + P
Sbjct: 301 QFQPAAGGYFVPEVPQAQGRPPYYTPNQLAQMRPNPCWQQGGRLQGFQGMPSALRQSGPG 360
Query: 265 AGFGYQQQLVP-GMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 323
G+ L P G PA +P V + GAG QQ
Sbjct: 361 PALGH---LAPTGNAPASRGLPTIIAQRVRSECPDRLAMDFGGAGAAQQG---------- 407
Query: 324 MPPRGHAYRYPLGR-NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 382
+ + P R N+ P + + ++ + P+TA + L
Sbjct: 408 LTDSCQSGGVPTARPNLAPPATVAATAPRAVAPYKYASSVRSPHPTIQRQEPLTA--SML 465
Query: 383 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 442
A A P++Q+ +LGE L+PL++ + + A K+TGMLLE+ +E+LH+LE+PE+L +KV EA
Sbjct: 466 AAARPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIGNSELLHMLETPESLCSKVDEA 525
Query: 443 MEVLR 447
+ VL+
Sbjct: 526 VAVLQ 530
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 126/196 (64%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A KA+E +
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DD LK
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEEVDDGNLK 109
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELFS+FG S KVMRD SG S+G GFV++ E+A++A+ EMNGK + K ++V AQ+
Sbjct: 110 ELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQK 169
Query: 210 KEERRARLQAQFSQMR 225
K ER+A L+ +F Q++
Sbjct: 170 KVERQAELKRKFEQLK 185
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 94
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 204/545 (37%), Positives = 284/545 (52%), Gaps = 125/545 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KNLD+ ++E+ +++F ++G ITSA
Sbjct: 199 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVN+ D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 TLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D IDDEKL+E+F+ +GTITS KVMRD +
Sbjct: 319 EAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSD 378
Query: 169 -----------------------------------------GISKGSGFVAFSTPEEASR 187
G SKG GFV FS+P+EAS+
Sbjct: 379 KEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASK 438
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL 247
A+ EMN +MI KPLYVA+AQRK+ RR++L+A + + +G+
Sbjct: 439 AVTEMNQRMINGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAA---------AAGM 489
Query: 248 GQQFLYGQAPPAII--PPQAGFGYQQQLVPGMRPAG---APMPNFFVPVVSQGQQGQRPG 302
Q ++ PA+ P Q GF +PG + G AP P + V G+ GQ PG
Sbjct: 490 PQPYMQ----PAVFYGPGQQGF------IPGGQRGGLPFAPQPGMMMGVPG-GRPGQYPG 538
Query: 303 ------GRRGAGPVQQT----QQPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGS 350
G RG GP QQ Q +P+ M P G + YP M F GAG
Sbjct: 539 PFPGQQGGRGMGPNQQIPPNFAQGIPM--GAMGPGGIPNGMGYP---QMGQVQFGRGAGG 593
Query: 351 MLPVP-VDMGAGIPRRD----------------------------ASVGQPMPITALST- 380
VP + MG G+ A G+ P L+
Sbjct: 594 RGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQ 653
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
+LA A QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV
Sbjct: 654 SLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVD 713
Query: 441 EAMEV 445
EA+ V
Sbjct: 714 EALSV 718
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL I +E+ +++F +FG ITS + RD G S+G GFV +ST + A A+ EMN
Sbjct: 232 YIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + + LYV AQ+K ER L+ Q+ R
Sbjct: 292 KEVKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 109 LNYTLIKGKPCRIMWSQR 126
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 194/495 (39%), Positives = 266/495 (53%), Gaps = 71/495 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ +K +F N+++KNLD T E+ ++F YG +TS+
Sbjct: 193 MLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSS 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+V D +GKSK FGFVN+E ++A +AV+ L+ ++ +V +AQKK+ERE EL+ +
Sbjct: 253 LVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D DD+KL+ F FG ITSCKVMRD G SKG GFV
Sbjct: 313 EQAKLEKLSKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVC 372
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KMI +KPLYV++AQR+E RR +L++Q +Q + M + +P
Sbjct: 373 FSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGVP 432
Query: 239 -MYPPGP----------------SGLGQQFLYGQAPPAI------------IPPQAGFGY 269
Y GP G GQ G PP I +P G G
Sbjct: 433 GGYINGPMYYPPGPGFPPQGRGMMGYGQP---GMMPPRIRYPNGQVPSMPPVPGPYGQGP 489
Query: 270 QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR-RGAGPVQQTQQPLPIMPHQMPPRG 328
Q +PG P GAP P S P R G P +P P Q P G
Sbjct: 490 QPYGMPGYPPRGAPRPPVARGPGSSPTHPSVPMPRANGPAPNGGAARPAP----QGAPTG 545
Query: 329 H----------------AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP 372
AY P R Q P + VP +G+P A
Sbjct: 546 SRAPPPGAPAPGRAPQPAYNKPQARP-QGAPVTAQPAA---VPAPQQSGLPNLTAD---- 597
Query: 373 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 432
LA ASP +Q+ +LGE +Y + + + A K+TGMLLEMD E+L LL+S
Sbjct: 598 --------QLAAASPMEQKQMLGEVIYMRIVPSQPELAGKITGMLLEMDNNELLALLDSE 649
Query: 433 EALKAKVAEAMEVLR 447
EA+ AKV EA VL+
Sbjct: 650 EAMNAKVQEANTVLQ 664
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLDE+ ++ L F +G + S V D G+SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++++NG +D++ YVG + ER+ E+K QF NL
Sbjct: 179 TAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQF-------------TNL 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL + E+ ELF+ +G +TS V D G SKG GFV + EEA RA+ E++
Sbjct: 226 YIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHD 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ K L+VA AQ+K ER L+ + Q +
Sbjct: 286 TDLKGKKLFVARAQKKAEREDELRRSYEQAK 316
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 43 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 103 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NVFIKNLDEAIDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 147 HDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHI 206
Query: 209 RKEERRARL---QAQFSQM 224
++ER+++L +AQF+ +
Sbjct: 207 SRKERQSKLDEMKAQFTNL 225
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 261/477 (54%), Gaps = 66/477 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A T F N++VKNL + L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NG + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E ++ +++ QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVAMGPSVP 234
FS+PEEA++A+ EMNG++I +KPLYVA+AQRKEER+A L Q+ S MR + GP +
Sbjct: 340 FSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALG-GPFL- 397
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV--PVV 292
G QQ P PP Y G P+ P P + P
Sbjct: 398 -----------GSFQQPTSYFLPAMAQPPAQAEHY------GSSPSRQPAPRWTTQPPRP 440
Query: 293 SQGQQGQRPG-GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
S + P RR V +Q +P+ +P H R G+
Sbjct: 441 SSASMVRPPAMSRRPLAQVCSVRQTSTQVPYLVP---HTQRVA------------NIGTQ 485
Query: 352 LPVPVDMGAGIPRRD--------------------ASVGQPMPITALSTALANASPEQQR 391
P P G P R + P P+TA + LA A QQ+
Sbjct: 486 TPGPGGAGCSTPGRSLPTHRYFLATPNTHEVQEPAVRILGPEPLTA--SMLAAAPLHQQK 543
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
++GE LYPL+ ++ A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 544 QMIGERLYPLIYEVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 600
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL G A N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREAEL-GARATAFT---------NIYVKNLPGHVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ +MNG + + LYV
Sbjct: 204 ERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F +
Sbjct: 264 GRAQKRGERQNELKRRFEHTK 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NVFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A +A++ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER A L A+
Sbjct: 175 SRREREAELGAR 186
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 184/469 (39%), Positives = 262/469 (55%), Gaps = 60/469 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG + ++ER++ I+ +F N++VKNLD +++ +K+F YGTITSA
Sbjct: 264 MLLNDKKVYVGRHIPRKERQSKLDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSA 323
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D DGKSK FGFVN+E + A KAV+ALN K + ++ +VG+AQK++ER++EL+ F
Sbjct: 324 VLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTF 383
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ A E + K QG+NLYIKN+ D +DDEKL+ F +GTITS K+MRD G+SKG GFV
Sbjct: 384 DAAKMERLAKLQGVNLYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVC 443
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTP+EA+RA+AEMN KMI SKPLYV++AQR++ RR +L++Q SQ + M + +
Sbjct: 444 FSTPDEATRAIAEMNNKMIGSKPLYVSLAQRRDVRRQQLESQISQRNQIRMQQAAAAGLT 503
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
Y GP +Y AP P Q G GY AG P
Sbjct: 504 GYINGP-------MYYGAPG--FPAQGGRGY----------AGYP--------------- 529
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
PG + P+P +P G+A + P M P+ G P
Sbjct: 530 --PGMTGPGRGGYRGPMPVPPIP------GYAGQAPQPYGMN--PYAPRPGPGGPRGGAP 579
Query: 359 GAGIPRRDASVGQPMPITALS--------------TALANASPEQQRTLLGESLYPLVEQ 404
G PR A G P A + + + +A E Q+ L+GE +Y V
Sbjct: 580 TNGTPRSGAGRGLPQAAPATTAAPKTATKPTELDISHITSAPAEGQKQLIGEIIYMRVYG 639
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
D A K+TGMLLEM+ +E++ LL+ +L K+ EA+ VL A ++
Sbjct: 640 PYPDLAGKITGMLLEMENSELIRLLKDTPSLDMKINEALAVLHEYAPKE 688
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 17/223 (7%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
LI K V + Q R+ KT N+F+KNLDE ++ L F +G + S V
Sbjct: 175 LIKGKPWHVSRIMWSQ-RDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFGNVLSCKVA 233
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQF 118
D G SK +GFV++E A+ A A++A++G +D++ YVG+ + ER+ E++ QF
Sbjct: 234 VDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSKLDEIRAQF 293
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
N+Y+KNL ID+++ ++LF +GTITS + D G SKG GFV
Sbjct: 294 -------------TNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVN 340
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
+ T E A +A+ +N K I K L+V AQ++ ER L+ F
Sbjct: 341 YETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTF 383
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 17/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ N+ D +A+E
Sbjct: 111 SLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQ 170
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + W+V + + Q + A+++T QG N++IKNL + ID++ L
Sbjct: 171 LNYSLIKGKPWHVSRI---------MWSQRDPALRKTG---QG-NIFIKNLDEGIDNKAL 217
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG + SCKV D G SKG GFV + T E A A+ ++G ++ K +YV
Sbjct: 218 HDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHI 277
Query: 209 RKEERRARL---QAQFSQM 224
++ER+++L +AQF+ +
Sbjct: 278 PRKERQSKLDEIRAQFTNI 296
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 270/476 (56%), Gaps = 36/476 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+L+ND ++FVGHF +++RE+ + +T+ F NV++KN E ++ L KIF ++G S
Sbjct: 260 ILLNDLKIFVGHFKSRKDRESELGAQTREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSV 319
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G+SK FGFVNF+ +DA A++ +NGK+ + R+ Y G+AQKK ER+ +L+ F
Sbjct: 320 KVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHF 379
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ + + ++QG+NLYIKNL D IDDE L++ FS FGTITS KVM + +G SKG GFV
Sbjct: 380 EQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN-NGRSKGFGFVC 438
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS PEEA+ A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q R + + P +
Sbjct: 439 FSAPEEATTAVTEMNGRLVASKPLYVALAQRKEERKAHLANQYVQ-RMARIRSTATPTLG 497
Query: 239 MYPPGPSG------LGQ-----------QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAG 281
Y G S L Q F ++ P + Q + + P
Sbjct: 498 PYRTGASSRYFFTPLTQSQSRGAYYSPNHFAQLRSSPHWSAQRVRSHSFQTITGPIHPKF 557
Query: 282 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP--RGHAYRYPLGRNM 339
P +S + +R +R P + P +P Y+Y G N
Sbjct: 558 CRSPLMSTSHMSTSRISRRITTQRVTSPAHTLRPLCPPGTTFIPTLRSTQQYKY-TGANY 616
Query: 340 QDFPFDMGAGSMLP-VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
+ F +G +P + + A +P GQ I + STAL P+ Q+ +LGE L
Sbjct: 617 NHYQF-IGIPPRIPTLTRQLVAHLP------GQEPAIPSTSTAL----PQPQKRVLGERL 665
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+PL++ L A K+TGMLL+ +E+L +L SPE L++K++EAM VL++ +++A
Sbjct: 666 FPLIQDLHPTLAGKITGMLLDRQNSEILRMLNSPECLRSKISEAMAVLQAHNEKEA 721
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 120/201 (59%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVFVKNL++S ++ L F +G I S V+ D +G SK +GFV+FE+ + A +
Sbjct: 194 KSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAER 252
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +D + +VG + + +RE EL Q + N+YIKN G+ +D
Sbjct: 253 AIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREFT----------NVYIKNFGEDMD 302
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L ++F +FG S KVMRD G SKG GFV F E+A A+ MNGK + + +Y
Sbjct: 303 EDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYA 362
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ +LQ F Q++
Sbjct: 363 GRAQKKLERQTQLQRHFEQLK 383
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F +A R + +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I KP+ + +QR
Sbjct: 171 MNLYIIKGKPVRLMWSQR 188
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 281/477 (58%), Gaps = 57/477 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER+ + KF NV+ KN+D TDE +K+F YG ITS
Sbjct: 195 MLLNDKKVYVGHHIPRKERQAKIEESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSC 254
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD DGKSK FGFVNFE+ ++A KAV+ L+ F ++ +V +AQKKSERE+EL+ +
Sbjct: 255 VLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLFVARAQKKSEREEELRRSY 314
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + KFQG+NLY+KN+ +S DDE+L+E F+ FGTITSCK+MR PSG+S+G GFV
Sbjct: 315 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGVSRGFGFVC 374
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA++A++EMNGKM+ ++PLYVA+AQRK+ RR +L+AQ Q + + +
Sbjct: 375 YSVPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGM 434
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
YP G Y Q P P Q G +VP R A A M +P+ GQ G
Sbjct: 435 GYP------GPGMYYPQ--PGAFPGQPG-----GMVPRPRYAPAGMMPQGMPMAPYGQPG 481
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY--------------------PLGRN 338
Q P AG + Q +P PPRG P G+
Sbjct: 482 QFP-----AGMMPQGYRPA------RPPRGAPNAAGGPAPPAGARPPAGVNGAPRPAGQP 530
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
+ P G G+ AG P+ A GQP T + ALA ASPE+Q+ +LGE++
Sbjct: 531 VPGQPMPRGPGA-------RPAGRPQEVA--GQPG--TLTAAALAKASPEEQKQMLGEAI 579
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q +
Sbjct: 580 YPKVAASQPELAGKLTGMILELPVTELLHLLEEQEALDAKVNEALEVLKEYQQNETT 636
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 114/204 (55%), Gaps = 11/204 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ +T N+F+KNLD ++ L F +G I S V + G S +GFV++E
Sbjct: 122 QRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYE 180
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++ +NG +D++ YVG + ER+ ++ +E+ KF N+Y K
Sbjct: 181 TAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKI--------EESRAKF--TNVYCK 230
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + DE+ ++LF+ +G ITSC + RD G SKG GFV F EEA +A+ E++
Sbjct: 231 NVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDF 290
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
+ L+VA AQ+K ER L+ +
Sbjct: 291 HGQKLFVARAQKKSEREEELRRSY 314
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
+++V LD S T+ L +IF G + S V RD +S + +VNF NA D +A+E
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN +R + +Q+ + A++ T QG N++IKNL ID++
Sbjct: 105 QLNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKA 148
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + F+ FG I SCKV + +G S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 LHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHH 207
Query: 208 QRKEERRARLQ---AQFSQMRPVAMGPSV 233
++ER+A+++ A+F+ + + P V
Sbjct: 208 IPRKERQAKIEESRAKFTNVYCKNVDPEV 236
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 194/531 (36%), Positives = 276/531 (51%), Gaps = 119/531 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN+ TD++ + +F +G +TS+
Sbjct: 185 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSS 244
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAVE LN K F ++ YVG+AQKK ERE+EL+ +
Sbjct: 245 SLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSY 304
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 167
E A E +K+QG+NLYIKNL D +DDEKL+ LF++FG ITS KVMRD
Sbjct: 305 EAARLEKANKYQGVNLYIKNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEEGS 364
Query: 168 ---------------------------------SGISKGSGFVAFSTPEEASRALAEMNG 194
G SKG GFV FS P++A++A+AEMN
Sbjct: 365 SEEKEKENKPEAEEKTEEKEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQ 424
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 254
+M+ KPLYVA+AQRK+ R+++L+A +A + P+ M PP GQQ ++
Sbjct: 425 RMVHGKPLYVALAQRKDVRKSQLEASIQARNQLAAAAAGLPQQYMQPPVFYAGGQQPVFP 484
Query: 255 QAP-----------------------PAIIPPQAGFGYQQQL-----VPGMRPAGAPMPN 286
Q P P Q G G QQ+ +PG P GAP PN
Sbjct: 485 QGGRGMPFPQPGMPMPAVQGGRPGQFPGGYPQQGGRGVPQQMPPVYGMPGQFPPGAPYPN 544
Query: 287 F----FVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
F+ + QG G +PG RGA P PR +A
Sbjct: 545 SGNPQFLAAIQQG--GNQPGAGRGANP--------------NGPRNNA------------ 576
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 402
PF G P D+ + +S+ Q LS+A N P QQ+ +LGE ++P +
Sbjct: 577 PFPQGGRGAAPAQ-DLNS------SSLIQ----QQLSSAAGN--PGQQKQILGEVIFPKI 623
Query: 403 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
+ ++ + A K+TGMLLEM+ E+++L+E ALKAKV EA+ V + Q
Sbjct: 624 QAMQPELAGKITGMLLEMENAELVNLIEDESALKAKVDEALGVYEEYIKNQ 674
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 111 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 170
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 171 TDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 217
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + + D++ ++LF+ FG +TS + RD G S+G GFV F+T E A++A+ ++N
Sbjct: 218 YVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNN 277
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 278 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 308
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 190/490 (38%), Positives = 279/490 (56%), Gaps = 46/490 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q +R V P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQRMASVRAVP-NPVIN 398
Query: 235 PRMPMYPPG------PSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAG 281
P P P G P + Y + A + P + Q Q +RPA
Sbjct: 399 PYQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPHPFQNKPSAIRPAA 458
Query: 282 APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH-------QMPPRGHAYRYP 334
+P F + Q + +R A QT P P + PR Y+Y
Sbjct: 459 PRVP-FSTMRPTSSQVPRVMSTQRVANTSTQTVGPRPAAAAAAATPAVRTVPR---YKYA 514
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN Q ++ + + +V T ++ LA+A P++Q+ +
Sbjct: 515 AGVRNPQQH-------------LNAQPQVTMQQPAVHVQGQETLTASMLASAPPQEQKQM 561
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE L+ ++ + A K+TGMLLE+D +E+LH+LES ++L++KV EA+ VL++ ++
Sbjct: 562 LGERLFRPIQAMHPTLAGKITGMLLEIDNSELLHMLESSQSLRSKVDEAVAVLQAHQVKE 621
Query: 454 ANNPADQLAS 463
A A A+
Sbjct: 622 ATQKAVNSAT 631
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 100 NIFVKNLDKSINNKVLYDTASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------PNVYIKNFGEDMDDERLK 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ +F QM+
Sbjct: 269 KVERQTELKRKFEQMK 284
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A RAL MN +I KP+ + +QR
Sbjct: 61 HPKDAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 188/460 (40%), Positives = 261/460 (56%), Gaps = 33/460 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGS 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQ 296
P L PA+ P A Y P+ P P + P VS
Sbjct: 400 FQQPASYFL----------PAVPQPPAQAAYY-----ASSPSVQPAPRWTAQPPRVSSAS 444
Query: 297 QGQRPGG-RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP-LGRNM---QDFPFDMGAGSM 351
+ P RR V +Q +P PP H R +G + G +
Sbjct: 445 MVRPPAMLRRPPAQVNSVRQASTQVP---PPGPHTQRVANIGTQTTGASGVGYSTPTGPV 501
Query: 352 LPVPVDMGAGIP-RRDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
L A P R+++V P P+TA + LA A +Q+ ++GE LYPL+
Sbjct: 502 LTHKYSSAAHNPGVRESAVCIPGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIYDTHTQ 559
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 560 LAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 599
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AIATMNGMLLNDRKVFVGHFKSRREREAELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD G S+G GFV F EEA +A+ +MNGK + + LYV
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + +KGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+A MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/491 (39%), Positives = 265/491 (53%), Gaps = 90/491 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL+ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMG------ 230
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q A+G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGS 399
Query: 231 ---------PSVP------------------PRMPMYPPGPSGLGQQFLYGQAPPA--II 261
P+VP PR PP PS PPA +I
Sbjct: 400 FQQPASYFLPAVPQPPAQTAYYASSSPMQPAPRWTAQPPRPS--------STYPPAASMI 451
Query: 262 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ----GQRPGGRRGAGPVQQTQQPL 317
P A V G+R A +P P V Q+ G + G GAG PL
Sbjct: 452 RPPAMLRRPPAQVSGVRQASTQVP----PTVPHTQRVANIGTQTTGASGAG-YPAPSGPL 506
Query: 318 PIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA 377
+ H + P R IP ++ P+TA
Sbjct: 507 LTHKYSSATYNHGVQEPAVR------------------------IPGQE-------PLTA 535
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+ LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 536 --SMLAAAPLHEQKQMIGERLYPLIYDAHTQLAGKITGMLLEIDNSELLLMLESPESLNA 593
Query: 438 KVAEAMEVLRS 448
KV EA+ VL++
Sbjct: 594 KVEEALAVLQA 604
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AIVTMNGMLLNDRKVFVGHFKSRREREAELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ +MNGK + + LYV
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIRGQPIRIMWSQRDPGLRKSGVG----------------NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER A L A+
Sbjct: 175 SRREREAELGAR 186
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 182/457 (39%), Positives = 260/457 (56%), Gaps = 25/457 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F +G + S
Sbjct: 161 MLLNDRKVFVGHFKSQREREAELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV+ +NGK+ ++ YVG+AQK++ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ +++G+NLY+KNL DSI DEKL+ +FS +G ITS KVM + SKG GFV
Sbjct: 281 EQLKQDRQTRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGDH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG ++ +KPLYVA+AQRKEER+A L Q+ + S P
Sbjct: 340 FSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMKRLSTVQALSRPVLGS 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
P FL G PPA P G + P R P VV
Sbjct: 400 FQQP-----NSYFLPTGAQPPAQAPCCGSSGSVAPVQPAPRWTAQPQRPSTASVV----- 449
Query: 298 GQRPGG--RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV- 354
RP G RR V +Q +PH + P + M S+LP
Sbjct: 450 --RPPGLPRRPQANVSSVRQASTQVPH-LAPHTKKVANIGTQTMGRAACSTEGPSLLPCT 506
Query: 355 ---PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 411
V + G+P V P+TA + LA A +Q+ ++GE LY L+ ++ A
Sbjct: 507 CSSTVHIAHGVPEPAVHVPGQEPLTA--SMLAAAPLHEQKQMIGERLYHLIPEVYASLAG 564
Query: 412 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
K+TGMLLE+D +++L +LESPE+L+AK+ EA+ VL++
Sbjct: 565 KITGMLLEIDNSDLLLMLESPESLQAKIEEAVAVLQA 601
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 121/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNL++S + L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL QA++ T N+Y+KNL +D
Sbjct: 154 AIGTMNGMLLNDRKVFVGHFKSQREREAELGA---QALEFT-------NIYVKNLSVDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LF FG + S KVMRD SG S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 204 EQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRAERQNELKRRFEQLK 284
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAV 86
++++V +L T+ L + F G I S V RD +S + ++NF+ DA +A+
Sbjct: 10 LSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ +N + + + +Q+ + G N++IKNL DSID +
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NVFIKNLEDSIDSK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 114 ALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGH 172
Query: 207 AQRKEERRARLQAQ 220
+ + ER A L AQ
Sbjct: 173 FKSQREREAELGAQ 186
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 201/466 (43%), Positives = 280/466 (60%), Gaps = 39/466 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER+ +T+ F NV+ KN+D TD++ +K+F ++G ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD DGKSK FGFVNFE+ ++A KAV+ L+ F ++ +V +AQKKSERE+EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + KFQG+NLY+KN+ +S DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA++A++EMNGKM+ ++PLYVA+AQRK+ RR +L+AQ Q + + +
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGM 436
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
YP G Y Q P P Q G +VP R A A M +P+ GQ G
Sbjct: 437 GYP------GPGMYYPQ--PGAFPGQPG-----GMVPRPRYAPAGMMPQGMPMAPYGQPG 483
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM-----LP 353
Q P AG + Q +P PPRG G P
Sbjct: 484 QFP-----AGMMPQGYRPA------RPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQP 532
Query: 354 VPVDMGAGIPRRDAS--VGQP---MPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
VP G +PR A+ G+P P + ALA ASPE+Q+ +LGE++YP V + +
Sbjct: 533 VP---GQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPE 589
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q +
Sbjct: 590 LAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 113/204 (55%), Gaps = 11/204 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ +T N+F+KNLD ++ L F +G I S V + G S +GFV++E
Sbjct: 124 QRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++ +NG +D++ YVG + ER+ ++ +ET F N+Y K
Sbjct: 183 TAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKI--------EETRANF--TNVYAK 232
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + D++ ++LF++FG ITSC + RD G SKG GFV F EA +A+ E++
Sbjct: 233 NVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDF 292
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
+ L+VA AQ+K ER L+ +
Sbjct: 293 KGQKLFVARAQKKSEREEELRRSY 316
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 21/220 (9%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
E+ A +++V LD S T+ L +IF GT+ S V RD +S + +VNF
Sbjct: 36 EQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNF 95
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
NA D +A+E LN +R + +Q+ + A++ T QG N++I
Sbjct: 96 LNAADGERAMEQLNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFI 139
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL ID++ L + F+ FG I SCKV + +G S G GFV + T E A A+ +NG +
Sbjct: 140 KNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGML 198
Query: 197 IVSKPLYVAVAQRKEERRARLQ---AQFSQMRPVAMGPSV 233
+ K +YV ++ER+A+++ A F+ + + P V
Sbjct: 199 LNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEV 238
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 169
EQ G EQ + D +LY+ L S+ + L E+FS GT+ S +V RD +
Sbjct: 28 EQPAVGNGEQ--RNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTR 85
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 86 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 125
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 199/462 (43%), Positives = 271/462 (58%), Gaps = 35/462 (7%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ DKQ++VG F++K +R + K+ N++VKNLD T+E L++ F E+G I S +
Sbjct: 165 IVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIA 224
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RD G S+ FGFVNFEN DDA A+E +NG + + YVG+AQK++EREQ L+ QFE+
Sbjct: 225 RDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEK 284
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
KE + KF+G N+Y+KN+ D + DE+L+E FS+ GTITS K+M+D G SKG GFV FS+
Sbjct: 285 RKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSS 344
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP----RM 237
EEAS+A+ +G M KPLYVA+AQRKEER+A+LQ Q++Q GPS P
Sbjct: 345 SEEASKAVNTFHGYMFHRKPLYVAIAQRKEERQAQLQLQYAQRIAGFHGPSTPVIPGGYT 404
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP-MPNFFVPVVSQGQ 296
P+Y PS + + P A+ P G G+ P +P+ P MP +SQ Q
Sbjct: 405 PLYYTAPSQVHPRPGMMYQPLAMRPGWRGNGFAPPSRPVFQPSHLPVMP------ISQRQ 458
Query: 297 QGQR----------PGGRRGAGPVQQTQQPLPIMPHQMPPR-GHAYRYPLGRNMQDFPFD 345
Q GG + VQQ QPL + R G A P GR
Sbjct: 459 HKQGRVRMNGHVLPQGGTQSVSYVQQPAQPLTSLKDPSNQRAGQAKYVPNGRTCD---VS 515
Query: 346 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 405
G+G + P G P S LS+ LA ASP++Q+ +LGE LYPLV +
Sbjct: 516 KGSGVLSAAPNSTG---PVSQGS-------EVLSSMLAAASPDEQKQILGEQLYPLVRKH 565
Query: 406 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
+ D AK+TGMLLEMD +E+L LLESPE+L AKV EA++VL+
Sbjct: 566 KPDLVAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLK 607
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ A + NV+VKNL ES + L+++FGE+GT+ S V DGKSK GFV FE
Sbjct: 90 HRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFE 149
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A+E LNG D++ YVGK KKS+R + K+ NLY+K
Sbjct: 150 SEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDR----------VLPSPDAKY--TNLYVK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL I +E L+E FSEFG I S + RD G S+G GFV F P++A A+ MNG +
Sbjct: 198 NLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTEL 257
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYV AQ++ ER L+ QF + R
Sbjct: 258 GSKVLYVGRAQKRAEREQILRRQFEEKR 285
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAK 84
T +++V L +D L F E+ T+ S V RD G+S C+G+VNF + +DA +
Sbjct: 10 TATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIR 69
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E N + + V + + + + G N+Y+KNL +SID
Sbjct: 70 AIETKNHTPLNGKLMRVMWSHRDPDARRNGIG----------------NVYVKNLSESID 113
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L+ELF EFGT+ SCKV G SKG GFV F + + A+ A+ ++NG ++ K +YV
Sbjct: 114 NVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYV 173
Query: 205 AVAQRKEER 213
+K +R
Sbjct: 174 GKFVKKSDR 182
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAF 179
A+ T+ +LY+ L + D +L + FSEF T+ S +V RD S G S G+V F
Sbjct: 2 AVPSTISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNF 61
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+PE+A RA+ N + K + V + R + R
Sbjct: 62 ISPEDAIRAIETKNHTPLNGKLMRVMWSHRDPDAR 96
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/274 (56%), Positives = 199/274 (72%), Gaps = 10/274 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG F R+ ER T FNNV+VKNL ES ++ LK++FG G +TS V+
Sbjct: 171 MLLNDKQVYVGPFQRRGERG--GGPTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVI 228
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNG-KKFDDREWYVGKAQKKSEREQELKGQFE 119
M+DG+GKSK FGFV FE ++ A++AVE L+G K +D+ W V +AQKK+ERE ELK +F+
Sbjct: 229 MKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFD 288
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+E ++K G NLYIKNL D++DD KL+ELF+EFGTITSC+VMRD SG S+GS FVAF
Sbjct: 289 AERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRGSAFVAF 348
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
S+ +EA+RA+ EMNGKM +KPLYVA+AQRKE+RR RLQAQF+Q R VA G M
Sbjct: 349 SSADEATRAVTEMNGKMAGTKPLYVALAQRKEDRRMRLQAQFAQ-RAVANGGMPGMPYGM 407
Query: 240 YPPGPSGLGQQFLYGQAPPAII---PPQAGFGYQ 270
PPG G YGQ PP ++ PQ GFG+Q
Sbjct: 408 PPPGVPG---AMYYGQPPPGVMGPPQPQPGFGFQ 438
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 15/209 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+ ++ L F ++G I SA V DG G SK +GFV F
Sbjct: 97 QRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYGFVQFA 156
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +D++ YVG Q++ ER T + N+Y+K
Sbjct: 157 EQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGER---------GGGPTTFN-----NVYVK 202
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KM 196
NL +S+D++KLKE+F G +TS +M+D G SKG GFV F E AS A+ +++G
Sbjct: 203 NLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDK 262
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I K V AQ+K ER A L+A+F R
Sbjct: 263 IEDKAWVVCRAQKKAEREAELKAKFDAER 291
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++ +LD + T+ L ++F G + S V RD +S + +VNF+ DAA+A++
Sbjct: 20 TSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAID 79
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + + +Q+ + G N++IKNL ID++
Sbjct: 80 VLNFNVVNGKPIRIMYSQRDPALRKSGVG----------------NIFIKNLDKEIDNKA 123
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS+FG I S KV D G+SKG GFV F+ E A +A+ ++NG ++ K +YV
Sbjct: 124 LYDTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPF 183
Query: 208 QRKEER 213
QR+ ER
Sbjct: 184 QRRGER 189
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 191/491 (38%), Positives = 271/491 (55%), Gaps = 65/491 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M++NDK+VFVGH + K+ER++ A + F NVFVKN+D S T+++ + + ++G S
Sbjct: 191 MMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSI 250
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKSK FGFVN+ + + A KAV+ LN K+ + ++ + G+AQK+ ER+ EL+
Sbjct: 251 ALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTI 310
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ +E K G+NLY+KNL D DD++L+ F FGTITSCKVM+D G+S+ GFV
Sbjct: 311 EEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVC 370
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+PEEA++A++EMNGKMI SKPLYVA+AQR+E RR L++Q +Q R+P
Sbjct: 371 YSSPEEATKAVSEMNGKMIGSKPLYVALAQRREARRQALESQIAQ--------RTNQRVP 422
Query: 239 MYPPG-PSGLGQQFLYGQAPPAIIPPQAGFG------------YQQQLVPGMRPAGAPMP 285
P G P G Q +YG PP G+G Y Q++ RP P P
Sbjct: 423 YAPGGMPQGYMNQPMYG------YPPMPGYGQPGMMPMRPMMGYNPQMMQ-QRPRYPPAP 475
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPR--------GHAYRYPL-- 335
Q G QQ MP+ +PP G + R P
Sbjct: 476 -----------MNQPGMGMPPMPYGMPPQQ----MPYAIPPNYPVRPGPGGISARPPTSA 520
Query: 336 -----GRNMQDFPFDMGAGSMLP--VPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
GR + P +G S LP +P M P D QP + ALA A
Sbjct: 521 PAPAQGR-INGGPSPVGYSSGLPGSMPRQMPMARPGYDQV--QPQQNKLSAQALARAPLA 577
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE+LYPL+ + + A K+TGMLLEMD +E+LHL+ESP AL KV EA++VL
Sbjct: 578 EQKQMLGEALYPLIGATQPELAGKITGMLLEMDNSELLHLIESPPALLEKVDEALKVLEE 637
Query: 449 VAQQQANNPAD 459
++ + D
Sbjct: 638 WGKEGGHADGD 648
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 113/208 (54%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDES ++ L F +G I S V D DGKS+ F FV+++
Sbjct: 117 QRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQ 176
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ ++G +D++ +VG K ER+ + + Q + N+++K
Sbjct: 177 TGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQ----------RAHFTNVFVK 226
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ S+ +++ ++L S+FG S + D G SKG GFV + + E A +A+ E+N K +
Sbjct: 227 NVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEV 286
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+ AQ++ ER L+ + R
Sbjct: 287 NGQKLWAGRAQKRVERDTELRKTIEEKR 314
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 17/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 41 SLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +SID++ L
Sbjct: 101 LNYSAIKGRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDESIDNKAL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D G S+G FV + T E A A+ ++G M+ K ++V
Sbjct: 145 HDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHI 204
Query: 209 RKEERRARLQAQFSQMRPV 227
K+ER+++ + Q + V
Sbjct: 205 GKKERQSKAEEQRAHFTNV 223
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 189
G +LY+ L S+ + L E+F+ G + S +V RD + S G +V + + RAL
Sbjct: 39 GASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 98
Query: 190 AEMNGKMIVSKPLYVAVAQR 209
+N I +P + +QR
Sbjct: 99 EHLNYSAIKGRPCRIMWSQR 118
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 261/474 (55%), Gaps = 60/474 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG+F ++ERE + KF NV++KN E TDE LK++F +G S
Sbjct: 159 MLLNDRKVFVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSV 218
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM+D G+S+ FGFVNF + DA KAV+ +NG + + + YVG+AQK+ ER+ ELK +F
Sbjct: 219 RVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKF 278
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 177
E ++ + ++QG+NLY+KNL D IDDE+L++ F+ +GTITS KVM D P S+G GFV
Sbjct: 279 ELIKQDRIQRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTDGPQ--SRGFGFV 336
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG+++ +KPLYVA+AQR+EER+A L ++ Q R + P +
Sbjct: 337 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQ-RLATLRTMSSPVI 395
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR--PAGAPMPNFFVPVVSQG 295
Y QQ Y P PP F Y V MR P P+ QG
Sbjct: 396 DSY--------QQAGYYMTVPQ--PPTRSF-YSPNAVSAMRALPRWTGQPHRL-----QG 439
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMP----------------------PRGHAYRY 333
G RRG+ P+ +Q P+ + PR Y+Y
Sbjct: 440 PYTIVSGPRRGSTPIASVRQASTQAPNIISSAQKTNNIGTQTVGGRADIPGIPRSGQYKY 499
Query: 334 PLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
RN Q + V P+ + P+TA + LA A Q+
Sbjct: 500 SSAVRNAQHV-----------IAVHAPPTRPQPSVHIQGQEPLTA--SMLAAAPLMDQKQ 546
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
LLGE LYPL+ L + A K+TGMLLE+D +E+LH+LE+PE+L +KV+ L
Sbjct: 547 LLGERLYPLISALHPNLAGKITGMLLEIDNSELLHMLETPESLHSKVSSRSSTL 600
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 10/158 (6%)
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 127
SK +GFV+FE + A +A+E +NG +DR+ +VG + + ERE+EL +A+K T
Sbjct: 135 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELG---SKALKFT-- 189
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 187
N+YIKN G+ DEKLKE+FS FG S +VM+D G S+G GFV F+ +A +
Sbjct: 190 -----NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQK 244
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
A+ EMNG + K +YV AQ++ ER+ L+ +F ++
Sbjct: 245 AVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIK 282
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 179/391 (45%), Positives = 236/391 (60%), Gaps = 28/391 (7%)
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +G S+CFGFVNFE ++ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ +K Q +NLY+KNL D I+DE L++LF FG + SCKVM D G SKG GFV+F+
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGPSVPPRMPM 239
T E+A+ A+ +MNGKM+ KPLYVAVAQRKEER+A L A F+++R +A M P++
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTL------ 174
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
GP+ QF +G PA+ PP G+ Q P +PN +P Q Q GQ
Sbjct: 175 ---GPNIAPHQFNFGHGVPALFPPPPPAGFGFQ--PNF------VPNMMMPYNMQRQPGQ 223
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPR--GHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 356
R G G P PHQM + +R+ P RN P + P+
Sbjct: 224 RSGPPHGGMPRHLHN------PHQMFHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPM 277
Query: 357 DMGAGIPRRDASVGQ-PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+ VG+ P L T+LA+A+PEQQR +LG+ L+PLVEQL + A KVTG
Sbjct: 278 QPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTG 337
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
MLLE+D+TEVL+L+ESP+ L+ KVAEAM+VL
Sbjct: 338 MLLELDKTEVLNLVESPDTLRDKVAEAMKVL 368
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
I D ++V +K ER+ +K KF N+++KNLD+ DE L+K+F
Sbjct: 34 IGDMVLYVARAQKKSERQA-ELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLF 92
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G + S VM D G+SK GFV+F +DA A+ +NGK + YV AQ+K E
Sbjct: 93 ECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEE 152
Query: 110 REQELKGQF 118
R+ L F
Sbjct: 153 RKAFLAAHF 161
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 181/452 (40%), Positives = 261/452 (57%), Gaps = 46/452 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ DK+VFV F + +R E F N+FVKNL +S + L K F ++G + S
Sbjct: 152 MLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSH 211
Query: 59 VVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
V+ D G SKC GF++F+ D A AVE ++ K+ + ++ Y G+AQKK+ER ELK +
Sbjct: 212 KVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAK 271
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
+E+ +E + ++QG+NLY+KNL DSIDDE L+E F +FG ITS KV+ D +G SKG GFV
Sbjct: 272 YEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG++ KPLYV +AQRKE+R+A LQ Q+ M+ V+ G + M
Sbjct: 332 CFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQY--MQRVSTGIRMQAFM 389
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
G + Q F Q P I+P G Q M P G PM
Sbjct: 390 -----GNQVVNQNF---QPPRYILPTMQGQPVQ------MFPQGTPMVR----------- 424
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 356
R A P Q+ Q P + G +R P RN+Q P ++ +
Sbjct: 425 ----ATPRWAPPNQRVQMPGMVRGRMAQQGGPQFRLTPSVRNVQ-IPSEV---------I 470
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTG 415
M +P ++ G P T S+ LANA+P++Q+ +LGE L+PL++ + D A K+TG
Sbjct: 471 QMPPQMPHQNQPAGDQAPETLTSSMLANANPQEQKQMLGERLFPLIQSMAATDLAGKITG 530
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
MLLE+D +E+LH+L++ E LK+KV EA+ VL+
Sbjct: 531 MLLEIDNSELLHMLDNRELLKSKVDEAVLVLK 562
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 118/197 (59%), Gaps = 12/197 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L F +G I S V+ D +G SK FGFV++E+ + A +A+E +
Sbjct: 91 NVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKV 149
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +V + + +++R +E F A K NL++KNL DS D + L
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMRE----FGDAAKHFT------NLFVKNLPDSWDTDALL 199
Query: 150 ELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F +FG + S KV+ D +G+SK GF++F ++A A+ M+ K I K LY AQ
Sbjct: 200 KNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQ 259
Query: 209 RKEERRARLQAQFSQMR 225
+K ER + L+A++ +++
Sbjct: 260 KKAERSSELKAKYEKIK 276
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + +G N++IKNL SID++ L
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQG----------------NVFIKNLDRSIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV + + E A RA+ ++NG ++ K ++VA +
Sbjct: 107 YDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFK 165
Query: 209 RKEER 213
+ +R
Sbjct: 166 SRNDR 170
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/449 (40%), Positives = 256/449 (57%), Gaps = 28/449 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A M V
Sbjct: 400 FQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVP 454
Query: 292 VSQGQQ--GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
R + V TQ+ I P G P GR + A
Sbjct: 455 RRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAH 513
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
S V + IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 514 STYRVQ-EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQL 563
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAK 438
A K+TGMLLE+D +E+L +LESPE+L AK
Sbjct: 564 AGKITGMLLEIDNSELLLMLESPESLHAK 592
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/462 (39%), Positives = 260/462 (56%), Gaps = 37/462 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F +G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNF+ ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S +R + +G
Sbjct: 340 FSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q Y P P+ P RP+ A + P
Sbjct: 400 FHQPTSYFLPSVPQPPAQAAYYASGLPMQPTPR-------WTAPPPRPSSASVVR--PPA 450
Query: 292 VSQGQQGQRPGGRRGAG----PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNM-QDFPFDM 346
+S+ Q R+ + PV TQ+ I G Y P G + +P
Sbjct: 451 MSRRPPAQVSSVRQASTQVPPPVPHTQRVANIGTQTTGASGVGYSTPGGPLLTHRYP--- 507
Query: 347 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 406
G+ + P+TA + LA A +Q+ ++GE LYPL+
Sbjct: 508 --------SATHNHGVQEPAVRILGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIYNTH 557
Query: 407 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 558 TQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVLQA 599
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AITTMNGMLLNDRKVFVGHFKSRREREVELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS FG + S KVMRD SG S+G GFV F EEA +A+ +MNGK + + LYV
Sbjct: 204 EQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F Q++
Sbjct: 264 GRAQKRVERQSELKRRFEQLK 284
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER L A+
Sbjct: 175 SRREREVELGAR 186
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 192/524 (36%), Positives = 278/524 (53%), Gaps = 98/524 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN++ TD++ +++F ++G +TS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSS 271
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GK++ FGFVNF + AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 272 SLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSY 331
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 167
E A E +K+QG+NLYIKNLGD +DDEKL+ +FSE+G ITS KVMRD
Sbjct: 332 EAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKVMRDSLIEGEEKDEKD 391
Query: 168 ------------------------------SGISKGSGFVAFSTPEEASRALAEMNGKMI 197
G SKG GFV FS P++A++A+ EMN +M+
Sbjct: 392 KENKKEGETKEEEEKEGSAEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMV 451
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
KPLYVA+AQRK+ R+++L+A + M + +G+ QQ++ QAP
Sbjct: 452 DGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AQAGMPQQYM--QAP 500
Query: 258 PAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP---GGRRGAGPVQQTQ 314
Q GF PG R G P P +PV G+ GQ P GGR G P Q
Sbjct: 501 VYYAGQQPGF----MPAPGGR--GVPFPQGGIPVQG-GRPGQYPYQQGGRGGVPPQQMPP 553
Query: 315 QPLPIM---PHQMPPRGHAYRYPLGR--------------NMQDFPFDMGAGSMLPVPVD 357
PI P PP Y +G+ Q P + G + P +
Sbjct: 554 MGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGIPAGIPQG-LQGAPAN 612
Query: 358 MGA-GIPRRDASV-----------GQPMPITA---LSTALANA-SPEQQRTLLGESLYPL 401
G G PR +A+ G P ++A L LA P+ Q+ ++GE+L+P
Sbjct: 613 GGGRGTPRGNANFMAAGRGASPVPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPK 672
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++ ++ A K+TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 673 IQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAV 716
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 138 QRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 198 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + D++ +ELF +FG +TS + RD G ++G GFV F+T E A++A+ ++NG
Sbjct: 245 YVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNG 304
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 305 KDFRGQDLYVGRAQKKHEREEELRRSYEAAR 335
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 122 LNYTLIKGRPCRIMWSQR 139
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 194/487 (39%), Positives = 280/487 (57%), Gaps = 53/487 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG F+ ++ERE + K K F NV+VKN E T+E L+ +F ++G ITS
Sbjct: 153 MLLNEKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSH 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FE +DA +AV+ LNGK+ D + YVG+AQKK+ER+ ELK +
Sbjct: 213 RVMTK-DGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRR 271
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++ G+NLY+KNL D+IDDE+L++ F+ +GTITS KVM D G SKG GFV
Sbjct: 272 FEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFV 330
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS P+EA++A+ EMNG+++ SKPLYVA+AQRKEER++ L +Q+ Q +R +G
Sbjct: 331 CFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQRVNSLRMQHIGQVY 390
Query: 234 PPRMPMYPPGPSGLGQ-QFLYG-QAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
+ P + Q Q YG Q P P+ Q + G + A P P
Sbjct: 391 QQSGSYFMP---TIAQPQRFYGPQVAPVRTAPRWSANAQMRPNAGNQNVAANAPAGGYPA 447
Query: 292 VSQGQ----QGQRPGGRRGAG---------------------PV--QQT---QQPLPIMP 321
++ Q ++ G RGA P+ QQT Q P+ P
Sbjct: 448 MTAAHVANNQYRQAGNVRGANQQAPNAQSAQANSAAMRNAARPITGQQTAANMQTRPVAP 507
Query: 322 HQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTA 381
+ Y ++M++ P + PV A I + GQ P+T ++
Sbjct: 508 QLAAGQARTPNYKFTQSMRN-PQVPQPVPIPAQPVAQQAVIVK-----GQE-PLT--TSM 558
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA A P +Q+ +LGE L+PL+E + + A K+TGMLLE+D +E+LH+LE E+L AK E
Sbjct: 559 LAAAQPAEQKQMLGERLFPLIELMYPNLAGKITGMLLEIDNSELLHMLEHKESLNAKAEE 618
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 619 AVAVLQA 625
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 124/202 (61%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+ ++ + F +G I S V +D G+SK +GFV+FE + A
Sbjct: 86 KSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANT 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG ++++ YVG+ + ERE+EL E+A T N+Y+KN G+ +
Sbjct: 146 SIEKVNGMLLNEKKVYVGRFISRKEREKELG---EKAKLFT-------NVYVKNFGEDLT 195
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
+E L+++F +FG ITS +VM G S+G GFVAF PE+A A+ ++NGK + K LY
Sbjct: 196 EEALRDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLY 254
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q++
Sbjct: 255 VGRAQKKNERQMELKRRFEQLK 276
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL ID++ +
Sbjct: 63 MNFDPIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKKIDNKAM 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 SRKEREKEL 175
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 188/461 (40%), Positives = 261/461 (56%), Gaps = 34/461 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRATRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGS 399
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV--PVVSQGQ 296
P L PA+ P A Y P+ P P + P VS
Sbjct: 400 FQQPASYFL----------PAVPQPPAQAAYY-----ASSPSVQPAPRWTAQPPRVSSAS 444
Query: 297 QGQRPGG-RRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP-LGRNM---QDFPFDMGAGSM 351
+ P RR V +Q +P PP H R +G + G +
Sbjct: 445 MVRPPAMLRRPPAQVNSVRQASTQVP---PPGPHTQRVANIGTQTTGASGVGYSTPTGPV 501
Query: 352 LPVPVDMGAGIP-RRDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
L A P R+++V P P+TA + LA A +Q+ ++GE LYPL+
Sbjct: 502 LTHKYSSAAHNPGVRESAVCIPGQEPLTA--SMLAAAPLHEQKQMIGERLYPLIYDTHTQ 559
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVA-EAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 560 LAGKITGMLLEIDNSELLLMLESPESLNAKVVEEALAVLQA 600
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AIATMNGMLLNDRKVFVGHFKSRREREAELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD G S+G GFV F EEA +A+ +MNGK + + LYV
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + +KGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+A MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 197/485 (40%), Positives = 278/485 (57%), Gaps = 50/485 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN + D L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFVNFE ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V ++QG+NLY+KNL D IDDE+L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM------P 285
PP PP P + Y +P + P + Q P PA P+ P
Sbjct: 400 FQPPPGYFLPPIPQPQPRAAFYSPSPVVPVRPATRWSAQPSRSPTY-PAATPVLRAAVQP 458
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQ-----TQQPLPIMPHQMPPRGH-AYRYPLG-RN 338
V +S +Q R + TQ +P RG Y+Y L RN
Sbjct: 459 RRLVSNISTMRQASTQVPRLTISSLLVAANIGTQTVSARVPSSPTLRGAPHYKYSLAMRN 518
Query: 339 MQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQR 391
+Q MG+ +P VG+P P+TA + LA A P++Q+
Sbjct: 519 IQ----PMGS-------------VPPGAQQVGEPAVHVQGQEPLTA--SMLAAAPPQEQK 559
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
++GE LYPL+ + A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++
Sbjct: 560 QMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAHQA 619
Query: 452 QQANN 456
+A++
Sbjct: 620 TEASH 624
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G S+ GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE E +AM+ T N+YIKN GD +D
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREAEFGA---RAMEFT-------NVYIKNFGDDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D +L+E+FS FG S KVM D +G SKG GFV F EEA +A+A+MNGK I + +YV
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRLERQSELKRKFEQMK 284
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
++ER A A+
Sbjct: 175 SRKEREAEFGAR 186
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 198/486 (40%), Positives = 280/486 (57%), Gaps = 53/486 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN + D L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFVNFE ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V ++QG+NLY+KNL D IDDE+L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM------P 285
PP PP P + Y +P + P + Q P PA P+ P
Sbjct: 400 FQPPPGYFLPPIPQPQTRAAFYSPSPVVPVRPATRWSAQPTRPPPY-PAATPILRAAVQP 458
Query: 286 NFFVPVVSQGQQGQR------PGGRRGAGPVQQTQQPLPIMPHQMPPRGH-AYRYPLG-R 337
+ +S +Q P +R A QT +P RG Y+Y L R
Sbjct: 459 RRLLSNISTMRQASTQVPRVPPQAQRVANIGTQTISAR--VPSSPTLRGAPQYKYSLAVR 516
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQ 390
N+Q MG+ +P VG+P P+TA + LA A P++Q
Sbjct: 517 NIQ----PMGS-------------VPPGAQQVGEPAVHIQGQEPLTA--SMLAAAPPQEQ 557
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++
Sbjct: 558 KQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAHQ 617
Query: 451 QQQANN 456
+A++
Sbjct: 618 ATEASH 623
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G S+ GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E +AM+ T N+YIKN GD +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRKEREAEFGA---RAMEFT-------NVYIKNFGDDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D +L+E+FS FG S KVM D +G SKG GFV F EEA +A+A+MNGK I + +YV
Sbjct: 204 DNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRLERQSELKRKFEQMK 284
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
++ER A A+
Sbjct: 175 SRKEREAEFGAR 186
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 200/483 (41%), Positives = 270/483 (55%), Gaps = 72/483 (14%)
Query: 12 HFLRKQERETVAIKT--KFNNVFV---KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
HF E E A K+ K N + + KN E TD+ LK++F +YGTITS VM DG
Sbjct: 145 HF----ETEEAANKSIDKVNGMLLNGKKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDG 200
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKET 125
KS+ FGFV FE+ D A +AV LNGK+ + + YVG+AQKK+ER+QELK +FEQ E
Sbjct: 201 KSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLER 260
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+ ++QG+NLY+KNL DSI+DE+L+ F+ FGTITS KVM + G SKG GFV FS PEEA
Sbjct: 261 LSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEA 319
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYP 241
++A+ EMNG++IV+KPLYVA+AQRKE+R+A L +Q+ Q MR MG M+P
Sbjct: 320 TKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMG-------QMFP 372
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG--- 298
PG G G F+ P I PQ +G Q P PN P G G
Sbjct: 373 PG--GAGNYFV-----PTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFAT 425
Query: 299 ---------QRPGGRRGAGPVQQTQQPLPIMPHQ------MPPRGHA------------Y 331
+ P + AG ++ T PI Q M R A
Sbjct: 426 MQGPFRTTPRAPTAQ--AGTMRSTLSARPITGQQAVGGANMQSRSMAGPAVGVSAQSRPS 483
Query: 332 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
Y NM++ P M + P PV I ++ P+TA + LA A P++Q+
Sbjct: 484 NYKYTSNMRNPPQAMAIPA--PTPVQQAVHIQGQE-------PLTA--SMLAAAPPQEQK 532
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++
Sbjct: 533 QMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQA 592
Query: 452 QQA 454
+QA
Sbjct: 593 KQA 595
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 40/209 (19%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + + K
Sbjct: 148 TEEAANKSIDKVNGMLLNGK---------------------------------------K 168
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 169 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 228
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 229 AEGKCMYVGRAQKKAERQQELKRKFEQLK 257
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ ++NG ++ K
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 15/130 (11%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEY 52
K ++VG +K ER+ +K KF N++VKNLD+S DE L++ F +
Sbjct: 232 KCMYVGRAQKKAERQQ-ELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPF 290
Query: 53 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 112
GTITSA VM + DG+SK FGFV F ++A KAV +NG+ + YV AQ+K +R+
Sbjct: 291 GTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKA 349
Query: 113 ELKGQFEQAM 122
L Q+ Q +
Sbjct: 350 HLASQYMQRL 359
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN MI +P+ + +QR
Sbjct: 72 MNFDMIKGRPIRIMWSQR 89
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 185/463 (39%), Positives = 251/463 (54%), Gaps = 36/463 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F NVFVKNL TD++LK++F YG ITS+
Sbjct: 202 MLLNDREVFVGKHVSKKDRESKFEEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSS 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNF+N +DA KAV+ LN K+ + YVG+AQKK ER +EL+ Q+
Sbjct: 262 YLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL D+ID EKL+ F FG ITS +VM D G SKG GFV
Sbjct: 322 EATKLEKLSKYQGVNLFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVC 381
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMN +M+ KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 382 FSSPEEATKAITEMNQRMVEGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAAAA 441
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPN---FFVPVVSQG 295
P YGQ P PP G + G P P N +
Sbjct: 442 AGGAIPGQFMNPMFYGQQ-PGFFPPPGANGGRPNGANGAGPNAGPNANPQMMMAAAAAAA 500
Query: 296 QQGQRPGGRRGAG---PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 352
+ GQ P + GAG P QQ P+ + MPP Y G N Q P A M
Sbjct: 501 RGGQIPPPQAGAGWGRPNPNGQQIPPV--YGMPP-----VYQNGPNGQ--PRGAPAPGMY 551
Query: 353 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER----D 408
P G+P L+ L++ PEQQ+ +LGE LYP + R +
Sbjct: 552 P--------------PNGRPTKARDLAAILSSVPPEQQKRILGEELYPKIVSTGRANEPE 597
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
AA K+TGM+L++D E+L LLE E +A+ Q
Sbjct: 598 AAGKITGMMLDLDNQEILSLLEDDELFNNHFEDALTAYEEYKQ 640
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G SKCFGFV++E A+ A A+E +
Sbjct: 140 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENV 199
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE +VGK K +RE +E+K F N+++KNL D+
Sbjct: 200 NGMLLNDREVFVGKHVSKKDRESKFEEMKANF-------------TNVFVKNLAPEYTDQ 246
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+LKELFS +G ITS + +D G SKG GFV F +A +A+ E+N K I +P+YV
Sbjct: 247 ELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGR 306
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ +
Sbjct: 307 AQKKRERMEELRRQYEATK 325
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 20/198 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V L+ S + L +IF G ++S V RD KS + +VNF DD +A+E L
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDL 112
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGEG----------------NIFIKNLHPAIDNKALH 156
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 157 DTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 216
Query: 210 KEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 217 KKDRESKFEEMKANFTNV 234
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ D + E+L D++E ++ +E+ +E + KE + + +LY+
Sbjct: 2 SSDPTQIQESLEKLSLDNKEQ---PPKESTEQSKETTTETSAPAKENLGETSA-SLYVGE 57
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI 197
L S+++ L E+FS G ++S +V RD + S G +V F ++ +A+ ++N +I
Sbjct: 58 LNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDLNYSLI 117
Query: 198 VSKPLYVAVAQR 209
+P + +QR
Sbjct: 118 EGRPCRIMWSQR 129
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/483 (36%), Positives = 264/483 (54%), Gaps = 48/483 (9%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
+Q+ V F++K ER T K+ N+++KNLD+ T+E +K F +YG + S +M+ D
Sbjct: 194 RQLHVATFIKKSERSTNN-DDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDD 252
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G SK FGFV+F+N + A +A E++NG + YV +AQKK+ER+Q L+ E+ E
Sbjct: 253 GTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEI 312
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+ K G N+YIKN+ D + D+ L+E F+EFG ITS K+MRD GISKG GFV ++TPEEA
Sbjct: 313 ITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEA 372
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPG 243
A++ M G M KPLYVA+AQRKEERRA+L+ +F+++ + A P +P P
Sbjct: 373 KCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYP----- 427
Query: 244 PSGLGQQFLYGQAPPAIIPPQA----GF-----GYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
QF + A P+ PQ+ GF G Q+ M P+ + P++
Sbjct: 428 ------QFYF--AHPSTHLPQSPGRQGFMYPPIGISQEWRHNMFPSSHNIQQIHSPIMRN 479
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
+ R R G + + +PH P + + + Q F +P
Sbjct: 480 TPRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEF-----MSMSRQRFSH----AKYIPN 530
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTA----LANASPEQQRTLLGESLYPLVEQLERDAA 410
V M G+ ++ I++L+ A LA A PE+Q+ +LG LYPLVE+ D A
Sbjct: 531 DV-MANGL-----AIHHGDSISSLNDAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLA 584
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA----QQQANNPADQLASLSL 466
+K+TGMLLE+ +EV+ LL S L AK+ E +++L+ V Q+A +P L S +
Sbjct: 585 SKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVKPKPEDQEALHPGFLLDSAGV 644
Query: 467 NEN 469
N N
Sbjct: 645 NAN 647
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A ++ NVFVKNL++ + L+++F ++G I S V ++ DG S+ +GFV F
Sbjct: 116 RDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFAL 175
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A +++ LN F R+ +V KKSER DK+ NLY+KN
Sbjct: 176 QESADASIQNLNNSHFCGRQLHVATFIKKSERS-----------TNNDDKYT--NLYMKN 222
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D I +E +K FS++G + S K+M+ G SKG GFV+F PE A RA MNG ++
Sbjct: 223 LDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLG 282
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER+ LQ + R
Sbjct: 283 SKTLYVARAQKKAERKQYLQCLHEEKR 309
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 17/195 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
++V +L ES +E L ++FG+ GT+TS V RD S +G+VN+ + DAA A+E L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+ V + + + + G N+++KNL D +D+ L+
Sbjct: 100 NHSLILDKPIRVMWSNRDPDARRSGVG----------------NVFVKNLNDLVDNVSLQ 143
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF +FG I SCKV ++ G S+G GFV F+ E A ++ +N + L+VA +
Sbjct: 144 ELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIK 203
Query: 210 KEERRARLQAQFSQM 224
K ER +++ +
Sbjct: 204 KSERSTNNDDKYTNL 218
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 188/495 (37%), Positives = 271/495 (54%), Gaps = 61/495 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L + FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE-----------ERRARLQAQFSQMRP- 226
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE +R A ++A +Q P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPP 399
Query: 227 ----VAMGPSVPPRMPMYPPG--------PSGLGQQ---FLYGQAPPAIIP--PQAGFGY 269
+A P YPP P Q + P AI P P+ F
Sbjct: 400 SGYFMAAVPQTQNHAAYYPPSQVAQLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFS- 458
Query: 270 QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH 329
MRPA + +P Q G R A + +P
Sbjct: 459 ------TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR------- 505
Query: 330 AYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
Y+Y G RN Q ++ + + +V T ++ LA+A P+
Sbjct: 506 -YKYAAGVRNPQQH-------------LNAQPQVTMQQPAVHVQGQETLTASRLASAPPQ 551
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L++K EA+ VL++
Sbjct: 552 KQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKAGEAVAVLQA 611
Query: 449 VAQQQANNPADQLAS 463
++A A A+
Sbjct: 612 HEAKEATEKAVNSAT 626
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMDDERLK 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ F QM+
Sbjct: 269 KVERQTELKRTFEQMK 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 178
M + + +LY+ +L + + L E FS G I S +V RD I++GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDL--ITRGSSNYAYVN 58
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
F P++A AL MN +I KPL + +QR R R
Sbjct: 59 FQHPKDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKR 96
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 259/479 (54%), Gaps = 40/479 (8%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
+Q+ V F++K ER T K+ N+++KNLD+ T+E +K F +YG + S +M+ D
Sbjct: 194 RQLHVATFIKKSERSTNN-DDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDD 252
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G SK FGFV+F+N + A +A E++NG + YV +AQKK+ER+Q L+ E+ E
Sbjct: 253 GTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEI 312
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+ K G N+YIKN+ D + D+ L+E F+EFG ITS K+MRD GISKG GFV ++TPEEA
Sbjct: 313 ITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEA 372
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMPMYPPG 243
A++ M G M KPLYVA+AQRKEERRA+L+ +F+++ + A P +P P
Sbjct: 373 KCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSPVIPTGYP----- 427
Query: 244 PSGLGQQFLYGQAPPAIIPPQA----GFGY-----QQQLVPGMRPAGAPMPNFFVPVVSQ 294
QF + A P+ PQ+ GF Y Q+ M P+ + P++
Sbjct: 428 ------QFYF--AHPSTHLPQSPGRQGFMYPPIGISQEWRHNMFPSSHNIQQIHSPIMRN 479
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
+ R R G + + +PH P + + + Q F +P
Sbjct: 480 TPRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEF-----MSMSRQRFSH----AKYIPN 530
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
+ M G+ M A + LA A PE+Q+ +LG LYPLVE+ D A+K+T
Sbjct: 531 DI-MANGLAIHHGDSISSMN-DAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKIT 588
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA----QQQANNPADQLASLSLNEN 469
GMLLE+ +EV+ LL S L AK+ E +++L+ V Q+A +P L S +N N
Sbjct: 589 GMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVKPKPEDQEALHPGFLLDSAGVNAN 647
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A ++ NVFVKNL++ + L+++F ++G I S V ++ DG S+ +GFV F
Sbjct: 116 RDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFAL 175
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A +++ LN F R+ +V KKSER DK+ NLY+KN
Sbjct: 176 QESADASIQNLNNSHFCGRQLHVATFIKKSERS-----------TNNDDKYT--NLYMKN 222
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D I +E +K FS++G + S K+M+ G SKG GFV+F PE A RA MNG ++
Sbjct: 223 LDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLG 282
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER+ LQ + R
Sbjct: 283 SKTLYVARAQKKAERKQYLQRLHEEKR 309
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 17/195 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
++V +L ES +E L ++FG+ GT+TS V RD S +G+VN+ + DAA A+E L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+ V + + + + G N+++KNL D +D+ L+
Sbjct: 100 NHSLILDKPIRVMWSNRDPDARRSGVG----------------NVFVKNLNDLVDNVSLQ 143
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF +FG I SCKV ++ G S+G GFV F+ E A ++ +N + L+VA +
Sbjct: 144 ELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIK 203
Query: 210 KEERRARLQAQFSQM 224
K ER +++ +
Sbjct: 204 KSERSTNNDDKYTNL 218
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 193/535 (36%), Positives = 278/535 (51%), Gaps = 107/535 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN++ TDE+ +++F ++G +TS+
Sbjct: 211 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSS 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 271 SLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 167
E A E +K+QG+NLYIKNLGD +DD+KL+ +FSE+G ITS KVMRD
Sbjct: 331 EAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEK 390
Query: 168 ------------------------------SGISKGSGFVAFSTPEEASRALAEMNGKMI 197
G SKG GFV FS P++A++A+ EMN +M+
Sbjct: 391 DKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMV 450
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
KPLYVA+AQRK+ R+++L+A + M + +G+ QQ++ QAP
Sbjct: 451 DGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AQAGMPQQYM--QAP 499
Query: 258 PAIIPPQAGFGYQQQLVPGMRPAGAPMP-NFFVPVVSQGQQGQRP---GGRRGAGPVQQT 313
Q GF PG R G P P VP V G+ GQ P GGR G P Q
Sbjct: 500 VYYAGQQPGF----MPAPGGR--GVPFPQGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMP 553
Query: 314 QQPLPIM---PHQMPPRGHAYRYPLGRNMQD------------------FPFDMGAGSML 352
PI P PP Y +G+ P + G +
Sbjct: 554 PMGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAV 613
Query: 353 P------VPVDMGA-GIPRRDASV-----------GQPMPITA---LSTALANA-SPEQQ 390
P P + G G PR +A+ G P ++A L LA P+ Q
Sbjct: 614 PGYPPAGRPQNGGGRGTPRGNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQ 673
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+ ++GE+L+P ++ ++ A K+TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 674 KQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAV 728
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 137 QRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 196
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 197 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 243
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + + DE+ +ELF++FG +TS + RD G S+G GFV F+T E A++A+ E+NG
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 304 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 121 LNYTLIKGRPCRIMWSQR 138
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 181/453 (39%), Positives = 256/453 (56%), Gaps = 58/453 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ IK F N++VKN+D ++EDLKK+F YG ITS
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSI 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVN+E + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 263 YLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL D+ID EKL+E F FGTITS +VM D +G SKG GFV
Sbjct: 323 ENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMN +M KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 383 FSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAT--- 439
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP----GMRPAGAPMPNFFVPVVSQ 294
G P IPP F QQ P G P P P ++ +
Sbjct: 440 ---------------GGIPGQFIPPM--FYGQQGFFPPNGRGNAPFPGPNPQM---IMRR 479
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
GQ P GP QP+P+ + +PP+ AY G+N++
Sbjct: 480 GQPFGGPEQWPRPGP---NGQPVPV--YGIPPQ--AYSDFNGQNIRQ------------- 519
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAA 410
P R+ + G+ L+ +A+A P+QQ+ +LGE LYP + + E +AA
Sbjct: 520 ---QRGYYPNRNQNKGRQQ--RDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAA 574
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
K+TGM+L++D E+L LLE E +A+
Sbjct: 575 GKITGMMLDLDNQEILALLEDDELFTNHFEDAL 607
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 129 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A+E +NG +DRE +VGK K +RE +E+K F N+
Sbjct: 189 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANF-------------TNI 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ +E LK+LF+ +G ITS + +D G SKG GFV + E A +A+ E+N
Sbjct: 236 YVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + +YV AQ+K ER L+ Q+ R
Sbjct: 296 KEINGQKIYVGRAQKKRERMEELKKQYENTR 326
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA+E
Sbjct: 53 SLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEE 112
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 113 LNYSPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 156
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 157 HDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI 216
Query: 209 RKEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 217 SKKDRESKFEEIKANFTNI 235
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 279/536 (52%), Gaps = 108/536 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D T+E+ +KIF ++G ITSA
Sbjct: 202 MLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSA 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVN+ + A AV+ ++ K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 262 TLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D +DDEKL+ELF +GTITS KVMRD +
Sbjct: 322 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDS 381
Query: 169 -------------------------------------------GISKGSGFVAFSTPEEA 185
G SKG GFV FS+P+EA
Sbjct: 382 EKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEA 441
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYP 241
S+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M P
Sbjct: 442 SKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQP 501
Query: 242 PGPSGLGQQFLY--GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
G GQQ GQ PQ G +PG RP P P P GQQG
Sbjct: 502 AVFYGPGQQGFIPAGQRGGMPFAPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG 551
Query: 300 RPGGRRGAGPVQQ---TQQPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLP 353
RG GP QQ Q +P+ Q P P G Y +G+ F G G +
Sbjct: 552 -----RGMGPNQQMPPNFQGIPMGAMQGPGGIPNGMGYPQAMGQ--VQFGRGGGRGQVPG 604
Query: 354 VPVDMGAGIP-----------------RRDASVGQP------MPITALST-ALANASPEQ 389
+P+ G P R + QP P AL+ AL A+P Q
Sbjct: 605 MPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQ 664
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
Q+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 665 QKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 128 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 187
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ E+K F N+
Sbjct: 188 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANF-------------TNI 234
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + +E+ +++F +FG ITS + RDP G S+G GFV +ST E A A+ EM+
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHD 294
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + ++ LYV AQ+K ER L+ Q+ R
Sbjct: 295 KEVKTQKLYVGRAQKKHEREEELRKQYEAAR 325
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 112 LNYTLIKGKPCRIMWSQR 129
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 177/460 (38%), Positives = 259/460 (56%), Gaps = 79/460 (17%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ +++RE + K K F NV++KN + DE L + F +YG +TS
Sbjct: 163 MLLNGKKVFVGRFIPRKDRERELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSH 222
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM DGKS+ FGFV +E+ D A +A + ++ K + + +VG+AQK++ER+ EL+ +F
Sbjct: 223 KVMSSDDGKSRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKF 282
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++++QG+NLY+KNL D+IDDE+L++ F+ +GTITS KVM + G GFV
Sbjct: 283 EQMKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGGFGFVC 342
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSVP 234
FS+PEEA++A+ EMNG+++VSKPLYVA+AQRKE+R+A+L +Q+ Q MR MG
Sbjct: 343 FSSPEEATKAVTEMNGRILVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRMQQMGQ--- 399
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG----YQQQLVPGMRPAGAPMPNF-FV 289
M+ PG G F+ PA I PQ + Q + P P P F F
Sbjct: 400 ----MFQPGGPGY---FM-----PAPIQPQRFYTPAQMAQFRATPRWSAQPQPRPGFKFT 447
Query: 290 PVVSQG-QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
P + QG P G QQ L + +
Sbjct: 448 PAMRNPPSQGSLPSNAMGGSAAGGMQQALVVQGQE------------------------- 482
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
P+TA + LA+A+P Q+ +LGE L+PL++++ D
Sbjct: 483 -------------------------PLTA--SMLASAAPNDQKQMLGERLFPLIQRMYPD 515
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++
Sbjct: 516 MAGKITGMLLEIDNSELLHMLEHNESLKAKVDEAVAVLQA 555
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 89 QRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAGNSKGYGFVHFE 148
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+ +NG + ++ +VG+ + +RE+EL E+A T N+YIK
Sbjct: 149 TEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRERELG---EKAKYFT-------NVYIK 198
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD DDEKL E FS++G +TS KVM G S+G GFV + P+ A RA +M+ K +
Sbjct: 199 NFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACDDMHAKDM 258
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K L+V AQ++ ER+ L+ +F QM+
Sbjct: 259 NGKTLFVGRAQKRNERQTELRRKFEQMK 286
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A+++
Sbjct: 13 SLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 73 MNFDVLRGRPIRIMWSQRDPSLRRSGVG----------------NIFIKNLDKTIDNKAM 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA--V 206
+ FS FG I SCKV +D +G SKG GFV F T E A A+ ++NG ++ K ++V +
Sbjct: 117 YDTFSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFI 176
Query: 207 AQRKEERRARLQAQF 221
++ ER +A++
Sbjct: 177 PRKDRERELGEKAKY 191
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 187/484 (38%), Positives = 274/484 (56%), Gaps = 46/484 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+ +VFVG F ++ERE+ + +K K + N+++KN E+ D+ L +IF +YG S
Sbjct: 195 MLLNNLKVFVGRFKSRRERESELGVKAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSV 254
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFV+F++ +DA AV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 255 KVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHF 314
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ + ++QG+NLYIKNL D+I+DE L++ FS FGTITS KVM + +G SKG GFV
Sbjct: 315 EQIKQNQHIRYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMME-NGRSKGFGFVC 373
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMR--------- 225
FS+ ++A++A EMNGK++ SKPLYV++AQRKEERR L+ Q+ + +R
Sbjct: 374 FSSSKDAAKASREMNGKLVASKPLYVSLAQRKEERRMHLKNQYMYRLAHLRSISNPVFNP 433
Query: 226 -------PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR 278
P M PS+P + S L Q + I P + + + P +
Sbjct: 434 YQLANSSPYFMTPSLPSQSQAALYNASQLAQLRSSPRWISKSIRPPSFHTLTKAICPNIP 493
Query: 279 PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP--PRGHAYRYPLG 336
A F P+ S + + R A Q PLP +P P +Y G
Sbjct: 494 RAT------FSPLRSTSEIPRMGATSRVANSPAQMLGPLPGTGTFLPTVPNVPHLKYDAG 547
Query: 337 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
+ + PF S P + A P S GQ + + + LA+A P +Q+ +LGE
Sbjct: 548 VDYPEQPF-----SKSPY-ISTLARQPAGHIS-GQE---SLMPSMLASALPPEQKRILGE 597
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS-----VAQ 451
L+P+++ + A K+TGMLLE D +E+LHLLESPE+L KV EA VL++ V Q
Sbjct: 598 RLFPIIQGISPTLAGKITGMLLETDNSEILHLLESPESLHCKVKEAAAVLQTHQAKEVTQ 657
Query: 452 QQAN 455
++ N
Sbjct: 658 KEVN 661
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 121/196 (61%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL++S ++ L F +G I S V+ D +G SK +GFV+FE + A KA+E +
Sbjct: 134 NVFVKNLEKSIDNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKM 192
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ + +VG+ + + ERE EL V N+YIKN G+++DD++L
Sbjct: 193 NGMLLNNLKVFVGRFKSRRERESELG----------VKAKDYTNIYIKNFGENMDDQRLT 242
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+F+++G S KVM D G SKG GFV+F + E+A A+ +MNGK + K +YV AQ+
Sbjct: 243 EIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQK 302
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ F Q++
Sbjct: 303 KRERQTELKRHFEQIK 318
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 188/495 (37%), Positives = 271/495 (54%), Gaps = 61/495 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L + FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE-----------ERRARLQAQFSQMRP- 226
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE +R A ++A +Q P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRTASVRAVPNQRAPP 399
Query: 227 ----VAMGPSVPPRMPMYPPG--------PSGLGQQ---FLYGQAPPAIIP--PQAGFGY 269
+A P YPP P Q + P AI P P+ F
Sbjct: 400 SGYFMAAVPQTQNHAAYYPPSQVAQLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFS- 458
Query: 270 QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH 329
MRPA + +P Q G R A + +P
Sbjct: 459 ------TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR------- 505
Query: 330 AYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
Y+Y G RN Q ++ + + +V T ++ LA+A P+
Sbjct: 506 -YKYAAGVRNPQQH-------------LNAQPQVTMQQPAVHVQGQETLTASRLASAPPQ 551
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L++K EA+ VL++
Sbjct: 552 KQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKADEAVAVLQA 611
Query: 449 VAQQQANNPADQLAS 463
++A A A+
Sbjct: 612 HEAKEATEKAVNSAT 626
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMDDERLK 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ F QM+
Sbjct: 269 KVERQTELKRTFEQMK 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 178
M + + +LY+ +L + + L E FS G I S +V RD I++GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDL--ITRGSSNYAYVN 58
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
F P++A AL MN +I KPL + +QR R R
Sbjct: 59 FQHPKDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKR 96
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 192/534 (35%), Positives = 278/534 (52%), Gaps = 106/534 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN++ TDE+ +++F ++G +TS+
Sbjct: 211 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSS 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GK++ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 271 SLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 167
E A E +K+QG+NLYIKNLGD +DD+KL+ +FSE+G ITS KVMRD
Sbjct: 331 EAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEK 390
Query: 168 -----------------------------SGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
G SKG GFV FS P++A++A+ EMN +M+
Sbjct: 391 DKENKKEGEAEEEQKEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVD 450
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 258
KPLYVA+AQRK+ R+++L+A + M + +G+ QQ++ QAP
Sbjct: 451 GKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AQAGMPQQYM--QAPV 499
Query: 259 AIIPPQAGFGYQQQLVPGMRPAGAPMP-NFFVPVVSQGQQGQRP---GGRRGAGPVQQTQ 314
Q GF PG R G P P VP V G+ GQ P GGR G P Q
Sbjct: 500 YYAGQQPGF----MPAPGGR--GVPFPQGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMPP 553
Query: 315 QPLPIM---PHQMPPRGHAYRYPLGRNMQD------------------FPFDMGAGSMLP 353
PI P PP Y +G+ P + G +P
Sbjct: 554 MGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVP 613
Query: 354 ------VPVDMGA-GIPRRDASV-----------GQPMPITA---LSTALANA-SPEQQR 391
P + G G PR +A+ G P ++A L LA P+ Q+
Sbjct: 614 GYPPAGRPQNGGGRGTPRGNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQK 673
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++GE+L+P ++ ++ A K+TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 674 QIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAV 727
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 122/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 137 QRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 196
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 197 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 243
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + + DE+ +ELF++FG +TS + RD G ++G GFV F+T E A++A+ E+NG
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNG 303
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 304 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 121 LNYTLIKGRPCRIMWSQR 138
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 194/518 (37%), Positives = 264/518 (50%), Gaps = 114/518 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D DE+ +K+F ++G ITSA
Sbjct: 193 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 253 TLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------------ 166
E A E K+QG+NLY+KNL D +DD+KL+ELF +GTITS KVMRD
Sbjct: 313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESE 372
Query: 167 ---------------------------------------PSGISKGSGFVAFSTPEEASR 187
P G SKG GFV FS+P+EAS+
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEEKEAEQKPEKKPLGKSKGFGFVCFSSPDEASK 432
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--------------AMGPSV 233
A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + M P+V
Sbjct: 433 AVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV 492
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
Y PG G F+ G + PPQ G PG P P P
Sbjct: 493 -----FYGPGQQG----FIPGAQRGGMFPPQPGMMMGMPGRPGQYP--GPFP-------- 533
Query: 294 QGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMPPRGHAYRYPL--------------- 335
GQQG RG GP QQ Q LP+ Q P + YP+
Sbjct: 534 -GQQGG-----RGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVP 587
Query: 336 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQR 391
G G +P+ M G R +VGQP P T + + AL+ A P+QQ+
Sbjct: 588 GMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 429
+LGE+LYP ++ + + A K+TGMLLEMD TE+L LL
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLL 685
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 179 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNI 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ ++DE+ ++LF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 286 KEVRSQKLYVGRAQKKHEREEELRKQYEAAR 316
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 111/208 (53%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ + +A++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 103 LNYTLIKGKPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDSAIDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G+SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 147 HDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 206
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 207 SKKDRQSKFEEMKANFTNIYIKNIDPEV 234
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183
T + +LY+ L S+ + L ELFS G + S +V RD + S G +V ++
Sbjct: 35 TTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTA 94
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQR 209
RAL E+N +I KP + +QR
Sbjct: 95 HGERALDELNYTLIKGKPCRIMWSQR 120
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 263/476 (55%), Gaps = 53/476 (11%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
+Q+ V HF++K ER + K+ N+++KNLD+ T+E +K F ++G + S +M+ D
Sbjct: 258 RQLHVAHFIKKSER-SANNDDKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDD 316
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G SK FGFV+F++ D A KA EA+NG + YV +AQKK+ER+Q L+ E+ E
Sbjct: 317 GTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEI 376
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+ K G N+YIKN+ D +DDE L+E F EFG ITS K+MRD GISKG GFV ++TP+EA
Sbjct: 377 LTKSNGSNVYIKNISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEA 436
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPRMP----- 238
A++ M G M KPLYVA+AQRKE+R+ARL+ +F+++ + A P +P P
Sbjct: 437 KCAVSSMRGVMFYDKPLYVAIAQRKEDRKARLEQRFAELATMVGAASPVIPTGYPHVYFA 496
Query: 239 ----MYPPGPSGLGQQFLYGQAPPAIIPPQAGFG--YQQQLVP---GMRPAGAP-MPNFF 288
+P GPS G F+Y P G G ++Q + P ++ AP MPN
Sbjct: 497 HPSTHFPQGPSRQG--FMY---------PPMGLGQEWRQNVFPSPHNIQQIHAPLMPN-- 543
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
P + +G+ G + PH + HA +M F G
Sbjct: 544 TPRQYRNNRGRMTGN-------------MMTFPHTVNYVSHAQTAKDFMSMSRQQF--GH 588
Query: 349 GSMLPVPV-DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 407
+P V G I D P T+L LA A P+QQR +LG LYPLVE+
Sbjct: 589 AKYIPADVMTSGLAIHHSDPVSSVNDPFTSL---LAAAPPDQQRNMLGNRLYPLVERYHP 645
Query: 408 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA-NNPADQLA 462
+ A+K+TGMLL++D ++V+ L+ SP+ L AK+ E ++L+ QQ A P DQ A
Sbjct: 646 ELASKITGMLLDLDSSDVVLLICSPDMLSAKINECAQLLQ--GQQAAKTKPEDQEA 699
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 118/207 (57%), Gaps = 13/207 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A ++ NVFVKNL++ + L+++F ++G I S V R+ DG S+ +GFV F
Sbjct: 180 RDPDARRSGVGNVFVKNLNDHIDNVILQELFSKFGDILSCKVARNDDGTSRGYGFVQFAA 239
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+E LN F+ R+ +V KKSER DK+ NLY+KN
Sbjct: 240 QESADIAIENLNNSHFEGRQLHVAHFIKKSERS-----------ANNDDKYT--NLYMKN 286
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D + +E +K FS+FG + S K+M+ G SKG GFV+F +P+ A +A MNG +
Sbjct: 287 LDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLG 346
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER+ LQ + R
Sbjct: 347 SKSLYVARAQKKAERKQYLQLLHEEKR 373
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 17/195 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEAL 89
++V +L E +E L F + G +TS V RD S +G+VN+ + DA A+E +
Sbjct: 104 LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKM 163
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+ V + + + + G N+++KNL D ID+ L+
Sbjct: 164 NHSLILDKPIRVMWSNRDPDARRSGVG----------------NVFVKNLNDHIDNVILQ 207
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELFS+FG I SCKV R+ G S+G GFV F+ E A A+ +N + L+VA +
Sbjct: 208 ELFSKFGDILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIK 267
Query: 210 KEERRARLQAQFSQM 224
K ER A +++ +
Sbjct: 268 KSERSANNDDKYTNL 282
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 191/456 (41%), Positives = 260/456 (57%), Gaps = 63/456 (13%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KN E TD+ LK++F +YGTITS VM DGKS+ FGFV FE+ D A +AV LNGK+
Sbjct: 168 KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKE 227
Query: 94 F-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
+ + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL DSIDDE+L++ F
Sbjct: 228 VAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEF 287
Query: 153 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+
Sbjct: 288 APFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKED 346
Query: 213 RRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG 268
R+A L +Q+ Q MR MG ++ PG G G F+ P I PQ +G
Sbjct: 347 RKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-----PTIPQPQRFYG 392
Query: 269 YQQQLVPGMRPAGAPMPNFFVPVVSQGQQG------------QRPGGRRGAGPVQQTQQP 316
Q P PN P G G + P + AG ++ T
Sbjct: 393 PAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQ--AGTMRNTLSA 450
Query: 317 LPIMPHQ------MPPRGHA------------YRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
PI Q M R A Y NM++ P M + P PV
Sbjct: 451 RPITGQQAVGGANMQNRSMAGPAVGVSAQSRPSNYKYTSNMRNPPQAMAIPA--PTPVQQ 508
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
I ++ P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLL
Sbjct: 509 AVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLL 559
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 560 EIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 595
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 40/209 (19%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + + K
Sbjct: 148 TEEAANKSIDRVNGMLLNGK---------------------------------------K 168
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLKE+F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 169 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 228
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 229 AEGKCMYVGRAQKKAERQQELKRKFEQLK 257
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 15/130 (11%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEY 52
K ++VG +K ER+ +K KF N++VKNLD+S DE L+K F +
Sbjct: 232 KCMYVGRAQKKAERQQ-ELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPF 290
Query: 53 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 112
GTITSA VM + +G+SK FGFV F ++A KAV +NG+ + YV AQ+K +R+
Sbjct: 291 GTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKA 349
Query: 113 ELKGQFEQAM 122
L Q+ Q +
Sbjct: 350 HLASQYMQRL 359
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN MI +P+ + +QR
Sbjct: 72 MNFDMIKGRPIRIMWSQR 89
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 183/458 (39%), Positives = 255/458 (55%), Gaps = 57/458 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ A+K F NV++KNLD T+++ +FG++G ITS
Sbjct: 217 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 276
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+++D + K + FGFVN+ N + A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ +
Sbjct: 277 SLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKAY 336
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++K+QG+NL+IKNL D +DDE+LK FS FGTITS K+M D G SKG GFV
Sbjct: 337 EQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVC 396
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ------FSQMRPVAMGPS 232
++TPEEA++A+ EMN +M+ KPLYVA+AQRKE RR++L+AQ F + VA
Sbjct: 397 YTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAG 456
Query: 233 VPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVV 292
+P + GP +YG P P A G +VPG P
Sbjct: 457 IPA-VQYGATGP------LIYG--PGGYPIPAAVNGRGMPMVPGHNGPMPMYP---GMPP 504
Query: 293 SQGQQGQRPG--GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 350
RPG G GPV +P+ +MP +P G
Sbjct: 505 LSSLLEVRPGYPGMNARGPVPAQGRPM-MMPGSVPSAG---------------------- 541
Query: 351 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT-LLGESLYPLVEQLERDA 409
P + +P G P TA A A PE+ R +LGE LYP V E
Sbjct: 542 --PAEAEAVPAVP------GMPERFTAADLA---AVPEESRKQVLGELLYPKVFVREEKL 590
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
+ K+TGMLLEM +E+L LLE AL +V EA+ VL+
Sbjct: 591 SGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQ 628
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 112/196 (57%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +
Sbjct: 155 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 214
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG + ER+ ++ +A+K N+YIKNL I +++
Sbjct: 215 NGMLLNDKKVYVGHHVSRRERQSKV-----EALKANFT-----NVYIKNLDTEITEQEFS 264
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+
Sbjct: 265 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 324
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ + QM+
Sbjct: 325 KHEREEELRKAYEQMK 340
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N +D KA++
Sbjct: 67 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 126
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 127 LNYTLIKGRPCRI----MWSQRDPSLR------------KMGTGNVFIKNLDPAIDNKAL 170
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G +KG GFV F + E A+ A+ +NG ++ K +YV
Sbjct: 171 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHV 230
Query: 209 RKEERRARLQA 219
+ ER+++++A
Sbjct: 231 SRRERQSKVEA 241
>gi|293335667|ref|NP_001167831.1| uncharacterized protein LOC100381531 [Zea mays]
gi|223944311|gb|ACN26239.1| unknown [Zea mays]
Length = 249
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 162/254 (63%), Positives = 190/254 (74%), Gaps = 11/254 (4%)
Query: 224 MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
MRPVAM PSV PRMPM+PP G+GQQ YGQ PPA I PQAGF +QQ ++PGMRP G P
Sbjct: 1 MRPVAMAPSVGPRMPMFPPSVPGVGQQLFYGQPPPAFINPQAGFAFQQPMMPGMRPGG-P 59
Query: 284 MPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQ 340
MPNF +P+V QGQQ QRP GRR G+G QQP+P+ Q P G YRY GR M
Sbjct: 60 MPNFMMPMVQQGQQPQRPAGRRAGSG---GMQQPMPMGSQQQIFPRGGRGYRYATGRGMP 116
Query: 341 DFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYP 400
D P G+++P P +MG G+ RDA V QP+PI AL+TALANASP+QQR +LGE+LYP
Sbjct: 117 D-PGMHNVGAVMPSPYEMG-GMAMRDAGVSQPVPIGALATALANASPDQQRLMLGENLYP 174
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA-- 458
LVEQLER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N +
Sbjct: 175 LVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNASTE 234
Query: 459 DQLASLSLNENLVS 472
QLA+LSLN+ ++S
Sbjct: 235 QQLANLSLNDGVLS 248
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 189/456 (41%), Positives = 257/456 (56%), Gaps = 63/456 (13%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KN E TD+ LK +F +YGTITS VM DGKS+ FGFV FE+ D A +AV LNGK+
Sbjct: 168 KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKE 227
Query: 94 F-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
+ + YVG+AQKK+ER+QELK +FEQ E ++++QG+NLY+KNL DSIDDE+L++ F
Sbjct: 228 VAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEF 287
Query: 153 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
+ FGTITS KVM + G SKG GFV FS PEEA++A+ EMNG++IV+KPLYVA+AQRKE+
Sbjct: 288 APFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKED 346
Query: 213 RRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG 268
R+A L +Q+ Q MR MG ++ PG G G F+ P I PQ +G
Sbjct: 347 RKAHLASQYMQRLANMRMQQMG-------QIFQPG--GAGNYFV-----PTIPQPQRFYG 392
Query: 269 YQQQLVPGMRPAGAPMPNFFVPVVSQGQQG----------------QRPGGRR------- 305
Q P PN P G G +PG R
Sbjct: 393 PAQMAQIRTTPRWPAQPNQVRPNAQTGSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARP 452
Query: 306 -------GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM 358
G +Q P + R Y+Y NM++ P M + P PV
Sbjct: 453 ITGQQTVGGANMQNRSMAGPAVGVTAQSRPSNYKYT--SNMRNPPQAMAIPA--PTPVQQ 508
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
I ++ P+TA + LA A P++Q+ +LGE L+PL++ + K+TGMLL
Sbjct: 509 AVHIQGQE-------PLTA--SMLAAAPPQEQKQMLGERLFPLIQCMYPQLTGKITGMLL 559
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E+D +E+LH+LE E+LKAKV EA+ VL++ +QA
Sbjct: 560 EIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 595
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 40/209 (19%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K+++ +NG + + K
Sbjct: 148 TEEAANKSIDRVNGMLLNGK---------------------------------------K 168
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + D+KLK++F ++GTITS KVM G S+G GFVAF P+ A +A+ E+NGK +
Sbjct: 169 NFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 228
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F Q++
Sbjct: 229 AEGKCMYVGRAQKKAERQQELKRKFEQLK 257
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDMIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
+ FS FG I SCKV +D SG+SKG GFV F T E A++++ +NG ++ K
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 15/130 (11%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEY 52
K ++VG +K ER+ +K KF N++VKNLD+S DE L+K F +
Sbjct: 232 KCMYVGRAQKKAERQQ-ELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPF 290
Query: 53 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 112
GTITSA VM + +G+SK FGFV F ++A KAV +NG+ + YV AQ+K +R+
Sbjct: 291 GTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKA 349
Query: 113 ELKGQFEQAM 122
L Q+ Q +
Sbjct: 350 HLASQYMQRL 359
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN MI +P+ + +QR
Sbjct: 72 MNFDMIKGRPIRIMWSQR 89
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 206/565 (36%), Positives = 283/565 (50%), Gaps = 141/565 (24%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNLD ++E+ +++F +YG ITSA
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RDG+ GKS+ FGFVNF + AA AVE LN K++ ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 SISRDGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-------- 169
E A E K+QG+NLY+KNL D IDDEKL++LF FG ITS +VMRD +G
Sbjct: 326 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEK 385
Query: 170 ------------------------------------------ISKGSG--FVAFSTPEEA 185
+ K G FV FS P+EA
Sbjct: 386 EKESANKENVKDEAKKESGEEDSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEA 445
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPRMP 238
S+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P P
Sbjct: 446 SKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQP 505
Query: 239 --MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ---LVPGMRPAGAPMPNFFVPVVS 293
YPPG G F+ PA + G + QQ ++PGM P G P +
Sbjct: 506 AVYYPPGQQG----FI-----PANAAQRGGMAFGQQPGMVIPGM-PGGRPGQ------FA 549
Query: 294 QGQQGQRPGGRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAYRYPLGRNMQDF 342
G GQ+ G RG P QQ Q LPI Q P P G +Y + + F
Sbjct: 550 AGFPGQQGG--RGINPNQQLPPNAFGLGAQGLPIGALQGPGGLPNGLSYPQAIAQVQASF 607
Query: 343 PFDMGAGSMLP----VPVDM--------------------------------------GA 360
G +P +P ++ G
Sbjct: 608 GRGGGGRGQVPGIQGMPPNLANVPGMRAGGQGFAQGRGIPPQQGGMVRSGQAGRGTGPGQ 667
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+P RD SVG P T AL+ A P QQ+ +LGE++YP ++ + + A K+TGMLLEM
Sbjct: 668 AMPPRDESVGGP---TLNLQALSAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEM 724
Query: 421 DQTEVLHLLESPEALKAKVAEAMEV 445
D E+L L++ AL+AKV EA+ V
Sbjct: 725 DNAELLSLVDDDAALRAKVDEAINV 749
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + RD +G S+G GFV F E A+ A+ E+N
Sbjct: 239 YVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 299 DKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 330
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 271/480 (56%), Gaps = 63/480 (13%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ DKQ++VG F+RK +R K+ N++VKNLD +E L++ F E+G I+S ++ R
Sbjct: 167 VGDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISR 226
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D +G S+ FGF+NFEN+DDA +A+E LNG + + Y+ +AQKK+ERE+ L+ +E+
Sbjct: 227 DENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKC 286
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
KE V K++G N+Y+KN+ D + DE+L+E FS+FGTITS K+MRD GI+KG GFV FS P
Sbjct: 287 KEQVLKYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNP 346
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-------- 234
+EA RA+ + G M KPLY+A+AQRKE+R+ +L+ QF+Q GPS
Sbjct: 347 DEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPP 406
Query: 235 ---PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P + PP S G F P + P Y PG +P +P+P +P
Sbjct: 407 YYYPAPGVVPPVASRPGLMF----QPLGMRPGWRPNTYTSPARPGFQP--SPLP--IIPT 458
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDM----- 346
S+ Q Q G G PI+ HQ + +Y +N QD +
Sbjct: 459 ASR-QPRQNRGKMNG-----------PILSHQNGVQSVSYM----QNSQDANQSVVTAKS 502
Query: 347 -----GAGSMLPVPVDMGAGIPRR--------------DASVGQPMPITALSTALANASP 387
G + VP + D S G + LS+ LA++ P
Sbjct: 503 SSNQQWTGQVKYVPNARSCETNKTSGASAAAAAFNSVGDVSQGSQI----LSSMLASSPP 558
Query: 388 EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
+QQ+ +LGE LYPLV++ + D AAK+TGMLLEMD +E+L LLESPE+L AKV EA++VL+
Sbjct: 559 DQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLK 618
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 122/205 (59%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K+ NVFVKNL +S L+++F ++G + S+ V DGKSK +GFV FE+
Sbjct: 92 RDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFES 151
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+E+LNG D++ YVGK +KS+R + K+ NLY+KN
Sbjct: 152 EESANAAIESLNGFTVGDKQIYVGKFVRKSDR----------VLANPDIKY--TNLYVKN 199
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L I +E L+E FSEFG I+S + RD +G+S+G GF+ F ++A RAL +NG +
Sbjct: 200 LDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLG 259
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
SK +Y+A AQ+K ER L+ + +
Sbjct: 260 SKVIYIARAQKKTEREEVLRRHYEE 284
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L TD L F + ++ S + RD G+S +G+VNF + DA A+E
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEV 74
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R V +++ ++ + G N+++KNL DSI+ L
Sbjct: 75 MNHSMLNGRAIRVMWSRRDADARKSGIG----------------NVFVKNLSDSINSLGL 118
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ELF +FG + S KV G SKG GFV F + E A+ A+ +NG + K +YV
Sbjct: 119 QELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFV 178
Query: 209 RKEER 213
RK +R
Sbjct: 179 RKSDR 183
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + D +L + FS F ++ S ++ RD S G S G+V F +P++A+ A+
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEV 74
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
MN M+ + + V ++R + R
Sbjct: 75 MNHSMLNGRAIRVMWSRRDADAR 97
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 191/457 (41%), Positives = 253/457 (55%), Gaps = 54/457 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IND++VFVG F +ER + K+ NV+VKNL E +E+L+ + YG IT+ +
Sbjct: 159 MIINDQKVFVGPFKSSKERGQTQ-ELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTI 217
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D KSK FGF NFE D+A VEA NGK F + YVG+AQKK ERE ELK +FE
Sbjct: 218 MSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFET 277
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR-DPSGISKGSGFVAF 179
K+QG+NLYIKN+ DSID +KL+ F+ +GTITS KVMR D S SKG GFV +
Sbjct: 278 -------KYQGVNLYIKNIDDSIDSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCY 330
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+TP+EAS+A+AEM+G+M+ +KPLYVA AQRKE RR L+AQ ++ + G + P M
Sbjct: 331 TTPDEASKAVAEMHGRMVGNKPLYVAFAQRKEIRRQHLEAQHNKFK----GNRIQPVPSM 386
Query: 240 YPPGPSGLGQQFLYGQAPPAIIP---PQAGFGYQQQLVPGMRPAGAPM-PNFFVPVVSQG 295
Y GP Y Q P + P P+ G+ Q + G G PM PN+ P+ +Q
Sbjct: 387 YAGGP------MFYNQGMPVVYPQMMPRPRPGWNQPVPQGQ---GYPMQPNY--PIRNQR 435
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
G P RG G + P+ P+Q P+ N Q P A + VP
Sbjct: 436 GPGGAPNHPRGPGGAPNQRPRGPMDPNQQVPQ--------AANPQPTPAPATAQEAVAVP 487
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
+ QP AL EQQ LGE LYPL+ + DAA K+TG
Sbjct: 488 SE-------------QPQITLEYVEALPR---EQQNPFLGELLYPLIHASQPDAAGKITG 531
Query: 416 MLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
MLL+ + E+ L + + L K+ EA+EVL SV+Q
Sbjct: 532 MLLDSLTVQELFELAQRADKLGEKIKEALEVL-SVSQ 567
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S + L F +G I S V+ D SK FGFV++E
Sbjct: 85 QRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGNILSCKVVTDETNVSKGFGFVHYE 144
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A KA+ +NG +D++ +VG + ER Q Q +K T N+Y+K
Sbjct: 145 SQDSADKAIMKVNGMIINDQKVFVGPFKSSKERGQ------TQELKYT-------NVYVK 191
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + +++E+L++L +G IT+ +M D SKG GF F TP+EA + NGK+
Sbjct: 192 NLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLF 251
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
K +YV AQ+K ER A L+ +F
Sbjct: 252 HGKVIYVGRAQKKMEREAELKHKF 275
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
++++V +L + TD L +IF + G + + + RD + S + +VN+ N DA +A++
Sbjct: 8 SSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALD 67
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + +Q+ + G N++IKNL S+D +
Sbjct: 68 TLNNTLVKGKACRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSVDHKA 111
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D + +SKG GFV + + + A +A+ ++NG +I + ++V
Sbjct: 112 LFDTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPF 171
Query: 208 QRKEER 213
+ +ER
Sbjct: 172 KSSKER 177
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASR 187
F +LY+ +L + D +L E+F++ G + + ++ RD + S +V + P +A R
Sbjct: 5 FSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAER 64
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N ++ K + +QR R
Sbjct: 65 ALDTLNNTLVKGKACRIMWSQRDPSLR 91
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 256/470 (54%), Gaps = 44/470 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + TK F NV++KN + DE L +FG +G I S
Sbjct: 136 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSV 195
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK +R ELK +F
Sbjct: 196 KVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKF 255
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 256 EQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVC 314
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRM 237
FS+PEEA++A++EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q M V GP+ P
Sbjct: 315 FSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGPN--PVN 372
Query: 238 PMYPPGPSGLG------QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P Y P S Q P I P+ + Q G RP P PN
Sbjct: 373 P-YQPASSSYSVAAVPQTQNCVPCCPSQIAQPRPSARWIAQ---GSRP--HPFPNV---- 422
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
PG A P P H H + P + +
Sbjct: 423 ---------PGAIHPAAPRSSLTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSATA 473
Query: 352 LPVP----VDMGAGIPRR----DASVGQPMPITA-----LSTALANASPEQQRTLLGESL 398
PV AG+ +A + Q + + ++ +P++ + +LGE L
Sbjct: 474 TPVHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERL 533
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+PL++ + A K+TGMLL++D +E L +LESP + ++ EA+ L++
Sbjct: 534 FPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEAVATLQA 583
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 11/195 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNL+++ ++ L F +G I S V+ D +G SK GFV+FE + A +A+E +
Sbjct: 75 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKM 133
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL KE N+YIKN GD +DDE L
Sbjct: 134 NGMLLNDRKVFVGRFKSQKEREAELG----TGTKEFT------NVYIKNFGDRMDDETLN 183
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
LF FG I S KVM D G SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 184 GLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQK 243
Query: 210 KEERRARLQAQFSQM 224
K++R L+ +F Q+
Sbjct: 244 KDDRHTELKHKFEQV 258
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 148 LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L E FS G I S +V RD + S G V F P +A RAL MN +I KP+ +
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 207 AQR 209
+QR
Sbjct: 62 SQR 64
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 211/567 (37%), Positives = 279/567 (49%), Gaps = 146/567 (25%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNLD T+E+ +++FG+YG ITSA
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ D + GKS+ FGFVNF + AA AVE LN K+F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 SITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC---------------- 161
E A E K+QG+NLY+KNL D IDDEKL++LF FG ITS
Sbjct: 326 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEK 385
Query: 162 ------------------------------------KVMRDPSGISKGSGFVAFSTPEEA 185
K + G SKG GFV FS P+EA
Sbjct: 386 EKEISNKENVKEEAKKESAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEA 445
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPRMP 238
S+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P P
Sbjct: 446 SKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQP 505
Query: 239 --MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ---LVPGMRPAGAPMPNFFVPVVS 293
YPPG G F+ PA + G + QQ ++PGM P G P
Sbjct: 506 AVYYPPGQQG----FI-----PANAGQRGGMAFGQQPGMVLPGM-PGGRP---------- 545
Query: 294 QGQ-QGQRPG--GRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAYRYPLGR-- 337
GQ G PG G RG P QQ Q LP+ Q P P G +Y + +
Sbjct: 546 -GQFAGGFPGQQGGRGINPNQQLPPNAFGMGAQGLPMGALQGPGGLPNGLSYPQAIAQVQ 604
Query: 338 --------------NMQDFPFDMGA---------------------GSMLPVPVDMGA-- 360
MQ P MG G P GA
Sbjct: 605 ASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGGQAFTQGRGMPPQQGVARPGQAGRGAGP 664
Query: 361 --GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G+P RD S G P T AL+ A P QQ+ +LGE++YP ++ + + A K+TGMLL
Sbjct: 665 AQGMPPRDESAGGP---TLNLQALSAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLL 721
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEV 445
EMD E+L L++ AL+AKV EA+ V
Sbjct: 722 EMDNAELLSLVDDEAALRAKVDEAINV 748
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + D +G S+G GFV F E A+ A+ E+N
Sbjct: 239 YVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 299 DKEFKGQKLYVGRAQKKHEREEELRKQHEAAR 330
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 193/517 (37%), Positives = 263/517 (50%), Gaps = 114/517 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D DE+ +K+F ++G ITSA
Sbjct: 193 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 253 TLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------------ 166
E A E K+QG+NLY+KNL D +DD+KL+ELF +GTITS KVMRD
Sbjct: 313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESE 372
Query: 167 ---------------------------------------PSGISKGSGFVAFSTPEEASR 187
P G SKG GFV FS+P+EAS+
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASK 432
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--------------AMGPSV 233
A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + M P+V
Sbjct: 433 AVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV 492
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
Y PG G F+ G + PPQ G PG P P P
Sbjct: 493 -----FYGPGQQG----FIPGAQRGGMFPPQPGMMMGMPGRPGQYP--GPFP-------- 533
Query: 294 QGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMPPRGHAYRYPL--------------- 335
GQQG RG GP QQ Q LP+ Q P + YP+
Sbjct: 534 -GQQGG-----RGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVP 587
Query: 336 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQR 391
G G +P+ M G R +VGQP P T + + AL+ A P+QQ+
Sbjct: 588 GMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 428
+LGE+LYP ++ + + A K+TGMLLEMD TE+L L
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGL 684
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 179 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNI 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ ++DE+ ++LF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 286 KEVRSQKLYVGRAQKKHEREEELRKQYEAAR 316
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183
T + +LY+ L S+ + L ELFS G + S +V RD + S G +V ++
Sbjct: 35 TTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTA 94
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQR 209
RAL E+N +I KP + +QR
Sbjct: 95 HGERALDELNYTLIKGKPCRIMWSQR 120
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 209/572 (36%), Positives = 278/572 (48%), Gaps = 156/572 (27%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNLD T+E+ +++FG+YG ITSA
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ D + GKS+ FGFVNF + AA AVE LN K+F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 SITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC---------------- 161
E A E K+QG+NLY+KNL D IDDEKL++LF FG ITS
Sbjct: 326 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEK 385
Query: 162 ------------------------------------KVMRDPSGISKGSGFVAFSTPEEA 185
K + G SKG GFV FS P+EA
Sbjct: 386 EKEISNKENVKEEAKKESAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEA 445
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPRMP 238
S+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P P
Sbjct: 446 SKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQP 505
Query: 239 --MYPPG-----PSGLGQQ--FLYGQAPPAIIPPQAGFGYQQQLVPGMRP----AGAPMP 285
YPPG P+ GQ+ +GQ P ++P +PG RP G P
Sbjct: 506 AVYYPPGQQGFIPTNAGQRGGMAFGQQPGMVLPG----------MPGGRPGQFAGGFP-- 553
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAYRYP 334
GQQG RG P QQ Q LP+ Q P P G +Y
Sbjct: 554 ---------GQQGG-----RGINPNQQLPPNAFGMGAQGLPMGALQGPGGLPNGLSYPQA 599
Query: 335 LGR----------------NMQDFPFDMGA---------------------GSMLPVPVD 357
+ + MQ P MG G P
Sbjct: 600 IAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGGQAFTQGRGMPPQQGVARPGQAG 659
Query: 358 MGA----GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
GA G+P RD S G P T AL+ A P QQ+ +LGE++YP ++ + + A K+
Sbjct: 660 RGAGPAQGMPPRDESAGGP---TLNLQALSAAPPAQQKQMLGEAIYPKIQAQQPELAGKI 716
Query: 414 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
TGMLLEMD E+L L++ AL+AKV EA+ V
Sbjct: 717 TGMLLEMDNAELLSLVDDEAALRAKVDEAINV 748
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + D +G S+G GFV F E A+ A+ E+N
Sbjct: 239 YVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 299 DKEFKGQKLYVGRAQKKHEREEELRKQHEAAR 330
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 264/471 (56%), Gaps = 71/471 (15%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +ND++VFVG + K++R + +K F NVFVKN T+ +L +F YG ITS
Sbjct: 202 MSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSL 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+D +GKSK FGF+NFEN D A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 262 YFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+ E L+E F FGTITS KVM D +G SKG GFV
Sbjct: 322 ETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVC 381
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS PEEA++A+ EMN +M++ KPLYVA+AQRK+ RR++L+ Q Q R +M
Sbjct: 382 FSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQI-QAR---------NQMR 431
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
M +G+ QF+ YGQ P P G G PG P P +P +
Sbjct: 432 MQNAAAAGIPGQFMPPMFYGQQ-PGFFP---GNGRNNGPFPG------PNPQMMMP---R 478
Query: 295 GQ----QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 350
GQ QGQ P AGP QP+P+ + MPP + + P GR + +
Sbjct: 479 GQMPPPQGQWP----RAGP---NGQPVPV--YGMPPVYNDFNGPNGRQQRGY-------- 521
Query: 351 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLE 406
P + G RRD L+ +A+A P+QQ+ +LGE LYP + + E
Sbjct: 522 -FPNNRNQKGG--RRD-----------LAAIIASAPPDQQKRILGEELYPKIVSTGKAQE 567
Query: 407 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM---EVLRSVAQQQA 454
+AA K+TGM+L++D E+L LLE E +A+ E + +++QA
Sbjct: 568 PEAAGKITGMMLDLDNQEILALLEDDELFNNHFEDALTAYEEYKKSSEEQA 618
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S V D G+SKCFGFV++E A+ A A+E +
Sbjct: 140 NIFIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIENV 199
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE +VGK K +R +E+K F N+++KN G +
Sbjct: 200 NGMSLNDREVFVGKHISKKDRVAKFEEMKANF-------------TNVFVKNFGSDFTEA 246
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+L +F +G ITS +D G SKG GF+ F + A +A+ E+N K + + +YV
Sbjct: 247 ELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGR 306
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ R
Sbjct: 307 AQKKRERIEELKKQYETTR 325
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 78
E+VA+ + +++V L+ S + L +IF G ++S V RD KS + +VN+
Sbjct: 44 ESVAVTSA--SLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHK 101
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+D +A+E LN D R + +Q+ + G N++IKN
Sbjct: 102 HEDGERALEQLNYSLIDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKN 145
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG +
Sbjct: 146 LHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLN 205
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ ++V K++R A+ +
Sbjct: 206 DREVFVGKHISKKDRVAKFE 225
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 256/470 (54%), Gaps = 44/470 (9%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + TK F NV++KN + DE L +FG +G I S
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK +R ELK +F
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRM 237
FS+PEEA++A++EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q M V GP+ P
Sbjct: 340 FSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGPN--PVN 397
Query: 238 PMYPPGPSGLG------QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P Y P S Q P I P+ + Q G RP P PN
Sbjct: 398 P-YQPASSSYSVAAVPQTQNCVPCCPSQIAQPRPSARWIAQ---GSRP--HPFPNV---- 447
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
PG A P P H H + P + +
Sbjct: 448 ---------PGAIHPAAPRSSLTTVRPSSSHVQVTTAHRITNTSAQITGQRPAPASSATA 498
Query: 352 LPVP----VDMGAGIPRR----DASVGQPMPITA-----LSTALANASPEQQRTLLGESL 398
PV AG+ +A + Q + + ++ +P++ + +LGE L
Sbjct: 499 TPVHSIPQYKYAAGVQNSQQHLNAQLAQQPAVCIQGQEPWTASMLVTAPQEPKQMLGERL 558
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+PL++ + A K+TGMLL++D +E L +LESP + ++ EA+ L++
Sbjct: 559 FPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEAVATLQA 608
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 11/200 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ NVF+KNL+++ ++ L F +G I S V+ D +G SK GFV+FE + A +
Sbjct: 95 RSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL KE N+YIKN GD +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSQKEREAELG----TGTKEFT------NVYIKNFGDRMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE L LF FG I S KVM D G SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Query: 205 AVAQRKEERRARLQAQFSQM 224
AQ+K++R L+ +F Q+
Sbjct: 264 GRAQKKDDRHTELKHKFEQV 283
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 192/502 (38%), Positives = 273/502 (54%), Gaps = 67/502 (13%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +ND++VFVG F +++R E A +F NV++KNL E DE L+ +F ++G S
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKF 280
Query: 119 ----------EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
EQ ++ + QG+NLY+KNL D IDDE+L++ FS FGTITS KV +
Sbjct: 281 GQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-G 339
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMAST 399
Query: 229 MGPSVPPRMPMYPP-GPSGLGQQFLYG----QAPPAIIPP----QAGFGYQ--------- 270
S P P P PSG F+ Q A P Q G G++
Sbjct: 400 SAVSSPVINPFQPAQAPSGY---FMTTTSQTQNCGAYYAPNQTTQQGPGHRGSAQGARAH 456
Query: 271 --QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ-----TQQPLPIMPHQ 323
Q + ++PA P + P SQ + R G+ Q T +P+P
Sbjct: 457 PFQNMSSAIQPATIPSFSTSGPASSQALRSMSTH-RAGSASTQMMGSHPTARPVP----- 510
Query: 324 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
Y+Y G +++ P + A + + R V +TA + LA
Sbjct: 511 ------QYKYTAG--VRNPPQHLSAQPQVT--------MQRSAVPVQGKASLTA--SMLA 552
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+ASP+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L K+ EA+
Sbjct: 553 SASPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKIDEAI 612
Query: 444 EVLRSVAQQQANNPADQLASLS 465
VL+ A Q P + S++
Sbjct: 613 AVLQ--AHQAKETPQQAVGSVA 632
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD S + L F +G I S V+ D +G SK +GFV+FE ++A +
Sbjct: 95 KSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + +R+ EL + ++ N+YIKNLG+ +D
Sbjct: 154 AIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFT----------NVYIKNLGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L+ LFS+FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKHKFGQMK 284
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD + S + VNF+ +DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SID + L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLDRSIDSKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
+ +R+A L A+
Sbjct: 175 SRRDRQAELGAR 186
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 181/459 (39%), Positives = 256/459 (55%), Gaps = 62/459 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K + N++VKN+D +DE+ +K+F +GTITS
Sbjct: 78 MLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDEEFEKLFVPFGTITSI 137
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVN+E + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 138 YLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 197
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DSID EKL+E F FG+ITS KVM D +G SKG GFV
Sbjct: 198 ESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGFGFVC 257
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
FS+PEEA++A+ EMN +MI+ KPLYVA+AQRK+ RR++L+ Q +QMR S
Sbjct: 258 FSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAS--- 314
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP----GMRPAGAPMPNFFVPV 291
G P IPP F QQ P G P P P +
Sbjct: 315 ------------------GGIPGQFIPPM--FYGQQGFFPPNGRGNAPFPGPNPQM---M 351
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
+ +GQQ P GP QP+P+ + +PP+ + R Q
Sbjct: 352 MRRGQQFPGPEQWPRPGP---NGQPVPV--YGIPPQFQDFNGQPMRQQQ----------- 395
Query: 352 LPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLER 407
G P R+ + G L+ +ANA P+QQ+ +LGE LYP + + E
Sbjct: 396 ------RGGYYPNRNQNKGGRQQ-KDLAAIIANAPPDQQKRILGEELYPKIVATGKAQEP 448
Query: 408 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+AA K+TGM+L ++ E+L LLE E +A+
Sbjct: 449 EAAGKITGMMLGLENQEILDLLEDDELFNNHFEDALTAF 487
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 120/208 (57%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ + ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 4 QRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHYE 63
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A+E +NG +DRE YVGK K +RE +FE+ MK N+Y+K
Sbjct: 64 TAEAAEAAIENVNGMLLNDREVYVGKHISKKDRE----SKFEE-MKANY-----TNIYVK 113
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ DE+ ++LF FGTITS + +D G SKG GFV + T E A +A+ E+N K I
Sbjct: 114 NIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEI 173
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER L+ Q+ R
Sbjct: 174 NGQKIYVGRAQKKRERMEELKKQYESTR 201
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 203/537 (37%), Positives = 289/537 (53%), Gaps = 85/537 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I D+ V+VG F+ K ER++ A K KFNN+++KN T +E LK++F E+G I SA V
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACV 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV F + D A AV+ ++GK+ + R Y +AQ+K ER++ELK + E+
Sbjct: 224 MKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEK 283
Query: 121 AMKETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E + +NLY+KNL D+IDD++L+E FS G+ITS KVM+D + SKG GFV F
Sbjct: 284 QRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCF 343
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSV 233
+ PE+A+RA+ +MNG +I SKPLYVA+AQRKE+RRA+L Q + +Q R PVA M P+V
Sbjct: 344 ANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAV 403
Query: 234 PPR---MPMYPPG---------PSG--LGQQFLYGQAP--PAII------PPQAGF---- 267
P +PP PSG L Q + +A PA I PP AG+
Sbjct: 404 PGHAAPHSFFPPAFQQTQRFYHPSGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSA 463
Query: 268 ------------GYQQQLVPG----MRPAG-APMPNFFVPVV-----SQGQQGQRPGGRR 305
+ Q PG M P G + +P+ + + QQ Q+ GR+
Sbjct: 464 PNPAAITANQMASFAQFRTPGVNRPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQ 523
Query: 306 G----------AGPVQQTQQPLPIMPHQMPPRGH-AYRYPLGRNMQDFPFDMGAGSMLPV 354
G AG + Q+P PP + A R + + G ++
Sbjct: 524 GVVVPQVLGATAGGL--NQRPTAASVVAGPPSVNPAMRQQVASQVPRAVMHSGMSNITST 581
Query: 355 PVDMGAGIPRRDASVGQP--MPITALST--------------ALANASPEQQRTLLGESL 398
++ R+ S QP +P ++ST ALA S E Q+ LGE L
Sbjct: 582 ATNVRFHQTARNVS-AQPTLVPAGSMSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHL 640
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
YP ++ + + A K+TGMLL +D EV++LLES E L+AK E + VLRS QQ +
Sbjct: 641 YPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKCEEGINVLRSSQNQQGD 697
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++L F +G I S ++ D +G+SK +GFV+FE + A +A+E +
Sbjct: 102 NIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N DR YVGK K+ER+ + + K + NLYIKN D+EKLK
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQAR------------KVKFNNLYIKNFPPETDNEKLK 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+F+EFG I S VM+D G SKG GFV F P+ A A+ M+GK I + LY A AQR
Sbjct: 210 EMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQR 269
Query: 210 KEERRARLQAQFSQMR 225
KEER+ L+ + + R
Sbjct: 270 KEERQEELKQRLEKQR 285
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L +D L+ F E G + SA V RD S +G+VNFE+ A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R + +Q+ + KG N++IKNL SI+ ++
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKG----------------NIFIKNLDKSIEQKE 116
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCK++ D +G SKG GFV F E A RA+ ++N +I + +YV
Sbjct: 117 LYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKF 176
Query: 208 QRKEERRAR 216
K ER+++
Sbjct: 177 IPKTERKSQ 185
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 130 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHA 67
Query: 186 SRALAEMNGKMIVSKPLYVAVAQR 209
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYESLMGRPIRIMWSQR 91
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 197/544 (36%), Positives = 278/544 (51%), Gaps = 123/544 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K + NV++KN++ T+E+ ++ F ++G ITS+
Sbjct: 219 MLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSS 278
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GK + FGFVN+ AAK VE +NGK++ +E YVG+AQKK ERE+EL+ +
Sbjct: 279 TLARDAEGKPRGFGFVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSY 338
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E +K+QG+NLYIKNL D +DDEKL+ +F+EFG ITS KVMRD
Sbjct: 339 EAARLEKQNKYQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNK 398
Query: 169 --------------------------------GISKGSGFVAFSTPEEASRALAEMNGKM 196
G SKG GFV F+ P++A++A+AEMN +M
Sbjct: 399 ENNKESEKEGEKKEGEGEGDKKPEVKKPERKLGKSKGFGFVCFANPDDATKAVAEMNQRM 458
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRM--PMYPPGPSGLGQ 249
+ KPLYVA+AQRKE R+++L+A +M+ A +P M P+Y P GQ
Sbjct: 459 VDGKPLYVALAQRKEVRKSQLEASIQARNQLRMQQQAAQAGLPQYMQPPVYYP-----GQ 513
Query: 250 QFLYGQAPPAIIPPQAGFGYQ-QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP------- 301
Q P +PP AG G Q GM P P F P Q +G P
Sbjct: 514 Q-------PGFLPPAAGRGMPFPQGALGMPPVQGGRPGQFPPYPQQAGRGTIPPQVPMYP 566
Query: 302 -GGRRGAGPVQQTQQPL------------------------PIMP----------HQMPP 326
G GA P Q L P +P PP
Sbjct: 567 IGQFPGAYPQPNNPQFLAAMQQVQQAAALAGGRGAPAGRGVPTVPIPQGIQAPGLAGYPP 626
Query: 327 RGHAYRYPLGR----NMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 382
G LGR N +FP GA P+ G+P G+ P L + L
Sbjct: 627 NGRPQNGNLGRGAGPNRSNFPAGRGAPPAGPL------GVP------GELSPAALLQSQL 674
Query: 383 -ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
A +P+QQ+ +LGE+L+P V+ L+ + A K+TGMLLEMD E+++L+E AL AKV E
Sbjct: 675 AATTNPQQQKQILGENLFPKVQALQPELAGKITGMLLEMDNQELINLIEDEAALVAKVNE 734
Query: 442 AMEV 445
AM V
Sbjct: 735 AMAV 738
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V D +G SK +GFV++E
Sbjct: 145 QRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVATDENGNSKGYGFVHYE 204
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ AA+A++ +NG ++++ YVG K +R+ +FE+ MK N+YIK
Sbjct: 205 TDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ----SKFEE-MKANY-----TNVYIK 254
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + +E+ +E FS++G ITS + RD G +G GFV +ST A++ + EMNGK
Sbjct: 255 NINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMNGKEW 314
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ + R
Sbjct: 315 RGQELYVGRAQKKHEREEELRKSYEAAR 342
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V +++ + +AL E
Sbjct: 69 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALEE 128
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 129 LNYTLIKGKPCRIMWSQR 146
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 203/535 (37%), Positives = 289/535 (54%), Gaps = 83/535 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I D+ V+VG F+ K ER++ A K KFNN+++KN T +E LK++F E+G I SA V
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACV 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV F + D A AV+ ++GK+ + R Y +AQ+K ER++ELK + E+
Sbjct: 224 MKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEK 283
Query: 121 AMKETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E + +NLY+KNL D+IDD++L+E FS G+ITS KVM+D + SKG GFV F
Sbjct: 284 QRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCF 343
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSV 233
+ PE+A+RA+ +MNG +I SKPLYVA+AQRKE+RRA+L Q + +Q R PVA M P+V
Sbjct: 344 ANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAV 403
Query: 234 PPR---MPMYPPG---------PSG--LGQQFLYGQAP--PAII------PPQAGF---- 267
P +PP PSG L Q + +A PA I PP AG+
Sbjct: 404 PGHAAPHSFFPPAFQQTQRFYHPSGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSA 463
Query: 268 ------------GYQQQLVPG----MRPAG-APMPNFFVPVV-----SQGQQGQRPGGRR 305
+ Q PG M P G + +P+ + + QQ Q+ GR+
Sbjct: 464 PNPAAITANQMASFAQFRTPGVNRPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQ 523
Query: 306 G----------AGPVQQTQQPLPIM---PHQMP--------PRG--HAYRYPLGRNMQDF 342
G AG + Q ++ P P PR H+ + +
Sbjct: 524 GVVVPQVLGATAGGLNQRPTAASVVAGPPSVNPAMRVASQVPRAVMHSGMSNITSTATNV 583
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST--ALANASPEQQRTLLGESLYP 400
F A ++ P + AG +++ QP+ T ALA S E Q+ LGE LYP
Sbjct: 584 RFHQTARNVSAQPTLVPAG---SMSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHLYP 640
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
++ + + A K+TGMLL +D EV++LLES E L+AK E + VLRS QQ +
Sbjct: 641 RIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKCEEGINVLRSSQNQQGD 695
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++L F +G I S ++ D +G+SK +GFV+FE + A +A+E +
Sbjct: 102 NIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N DR YVGK K+ER+ + + K + NLYIKN D+EKLK
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQAR------------KVKFNNLYIKNFPPETDNEKLK 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+F+EFG I S VM+D G SKG GFV F P+ A A+ M+GK I + LY A AQR
Sbjct: 210 EMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQR 269
Query: 210 KEERRARLQAQFSQMR 225
KEER+ L+ + + R
Sbjct: 270 KEERQEELKQRLEKQR 285
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L +D L+ F E G + SA V RD S +G+VNFE+ A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R + +Q+ + KG N++IKNL SI+ ++
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKG----------------NIFIKNLDKSIEQKE 116
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCK++ D +G SKG GFV F E A RA+ ++N +I + +YV
Sbjct: 117 LYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKF 176
Query: 208 QRKEERRAR 216
K ER+++
Sbjct: 177 IPKTERKSQ 185
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 130 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHA 67
Query: 186 SRALAEMNGKMIVSKPLYVAVAQR 209
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYESLMGRPIRIMWSQR 91
>gi|414588972|tpg|DAA39543.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 246
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 162/253 (64%), Positives = 189/253 (74%), Gaps = 12/253 (4%)
Query: 224 MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
MRPVAM PSV PRMPM+PPG G+GQQ YGQ PPA I PQAGF +QQ L+PGMRP G P
Sbjct: 1 MRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGG-P 59
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQD 341
MPNF +P+V QGQQ QRP GRR G QQP+P+ Q P G YRYP GR M D
Sbjct: 60 MPNFMMPMVQQGQQPQRPAGRRAGG----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPD 115
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
P G+++P +MG G+P R+A+ QP+PI AL+TALANA P+QQR +LGE+LYPL
Sbjct: 116 -PGMHSVGAVMPPSYEMG-GMPMREAAP-QPVPIGALATALANAPPDQQRLMLGENLYPL 172
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA--D 459
VEQLER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N +
Sbjct: 173 VEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQ 232
Query: 460 QLASLSLNENLVS 472
QLA+LSLN+ +VS
Sbjct: 233 QLANLSLNDGVVS 245
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 184/464 (39%), Positives = 260/464 (56%), Gaps = 42/464 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND +V+VG L K++R++ + F NV+VKN++ + ++ L++ F +GTI+S
Sbjct: 198 MLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSI 257
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D GKS+ FGFVNFE +DA KAVE LN K D ++ YVG+AQKKSER + LK Q+
Sbjct: 258 FLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQY 317
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A +E ++K+QG NL++KNL DSIDD KL+E F +GTITS KVM D +G SKG GFV
Sbjct: 318 EAARQEQLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVC 377
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+PEEA++A+ EM+ +M+ KPLYVA+AQRKE RR++L Q + M +
Sbjct: 378 YSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVRRSQLSQQIQARNQMRMQQAA----- 432
Query: 239 MYPPGPSGLGQ---QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
G+GQ YGQ P + P G + M G P P VP VS G
Sbjct: 433 ----AQGGMGQFVAPMFYGQNPGFLPPGARGAPFAAPGQQMMMQQGMPRPGQGVP-VSPG 487
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
Q P G+ PV QP+ ++ P G R P R Q G P
Sbjct: 488 QFRVGPNGQ----PVPMYMQPV---FNEYPQNG---RLPQQRYYQ-------GGRPGQQP 530
Query: 356 VDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAAA 411
G R D +V +L+ L PEQQ+ +LGE LYPL+ + + +AA
Sbjct: 531 PQAGPRGKREDGAV------PSLAQVLPQFPPEQQKRMLGEELYPLIVATGKAQDPEAAG 584
Query: 412 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
K+TGM+LEMD ++L LLE + ++ EA+ ++A+
Sbjct: 585 KITGMMLEMDNQQILALLEDRDLFNSQFEEALSAYEEYKNKEAS 628
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 23/203 (11%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVN 75
Q ET+A +++V LD S T+ DL ++F G +++ V RD K S + +VN
Sbjct: 41 QNSETLA------SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVN 94
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 135
F++ D KA+E LN + + +Q+ + G N++
Sbjct: 95 FQSHADGEKALEELNYTPIKGKACRIMWSQRDPSLRRNGSG----------------NIF 138
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL +ID++ L + FS FG I SCK+ D +G SKG GFV + E A A+ +NG
Sbjct: 139 IKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGM 198
Query: 196 MIVSKPLYVAVAQRKEERRARLQ 218
++ +YV K++R+++++
Sbjct: 199 LLNDHEVYVGPHLAKKDRQSKMR 221
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 185/464 (39%), Positives = 258/464 (55%), Gaps = 76/464 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K F NV+ KN+D ++E+ KK+F YG ITS
Sbjct: 202 MLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSI 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNFEN + A KAV+ LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 262 YLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL D+ID EKL+E F FG+ITS +VM D +G SKG GFV
Sbjct: 322 ENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVC 381
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--PVAMGPSV 233
FS+PEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q +QMR A +
Sbjct: 382 FSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI 441
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P + PP YGQ P PP G P P P +P
Sbjct: 442 PGQ--FIPP--------MFYGQQ-PGFFPPNG---------RGNGPFPGPNPQMMMP--- 478
Query: 294 QGQ----QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
+GQ QGQ P GP QP+P+ + MPP + F+ GA
Sbjct: 479 RGQIPPPQGQWP----RPGP---NGQPVPV--YGMPP------------VYGGDFNNGAN 517
Query: 350 ------SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV- 402
P G ++D L+ +ANA +QQ+ +LGE LYP +
Sbjct: 518 GGRQQRGYYPNRNQNQKGRQQKD-----------LAAIIANAPADQQKRILGEELYPKIV 566
Query: 403 ---EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+ E +AA K+TGM+L++D E+L LLE E +A+
Sbjct: 567 STGKAQEPEAAGKITGMMLDLDNEEILALLEDDELFNTHFEDAL 610
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G SKCFGFV++E A+ A A+E +
Sbjct: 140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENV 199
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE YVGK K +RE +E+K F N+Y KN+ +E
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEMKANF-------------TNVYAKNIDLDFSEE 246
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ K+LF +G ITS + +D G SKG GFV F E A +A+ E+N K I + +YV
Sbjct: 247 EFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGR 306
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ R
Sbjct: 307 AQKKRERLEELKKQYENTR 325
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G + S V RD KS + +VNF +D KA+E
Sbjct: 52 SLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIED 111
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 112 LNYSLIEGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKAL 155
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D GISK GFV + T E A A+ +NG ++ + +YV
Sbjct: 156 HDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHI 215
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 216 SKKDRESKFE 225
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP- 167
E EQ G+ E+A +LY+ L S+++ L E+FS G + S +V RD
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAV 87
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ S G +V F E+ +A+ ++N +I +P + +QR
Sbjct: 88 TKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQR 129
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 266/479 (55%), Gaps = 59/479 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 251 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 310
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 311 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 370
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS K
Sbjct: 371 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK---------------- 414
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
EEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 415 --NSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 472
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 473 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 531
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 532 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 584
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 585 KYAAGVRN----PQQHLNTQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 636
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 637 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 695
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 178 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 236
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 237 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 286
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 287 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 346
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 347 NGKQIYVGRAQKKVERQTELKRKFEQMK 374
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 194/485 (40%), Positives = 263/485 (54%), Gaps = 60/485 (12%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +ND +VFVG F +++R E A +F NV++KNL E DE L+ +FG +G S
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKF 280
Query: 119 EQAMKETVDKFQ-----------GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167
Q MK+ K + G+NLY+KNL D IDDE+L++ FS FGTITS KV +
Sbjct: 281 GQ-MKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME- 338
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRP 226
G SKG GFV FS+PEEA++A+ EMNGK++ +KPLYVA+AQRKEER+A L Q+ Q M
Sbjct: 339 GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMAS 398
Query: 227 VAMGPSVPPRMPMYPP-GPSGLGQQFLYGQAPPAIIPPQ-----------AGFGYQ---- 270
+ GP+ P P P GPSG Q+ A P + G +
Sbjct: 399 TSAGPN-PVVSPFQPAQGPSGYCMTATPTQSRRAYCAPNQTTQQGPSARGSAHGTRAHPF 457
Query: 271 QQLVPGMRPAGAPMPNFFV--PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG 328
Q + + P+ MP+F P SQ + R A Q P P
Sbjct: 458 QNMCSTIHPSHT-MPSFSTSGPTTSQAIR------HRTASTSTQMMGPHPAAAAAAAAPA 510
Query: 329 ----HAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
Y+Y G RN P + P + +P V +TA + LA
Sbjct: 511 TRTITQYKYTAGVRNPPQHP------NTQPHVSTQRSAVP-----VQGKESLTA--SMLA 557
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV EA+
Sbjct: 558 SAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTKVDEAI 617
Query: 444 EVLRS 448
VL++
Sbjct: 618 AVLQA 622
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD S + L F +G I S V+ D +G SK +GFV+FE ++A +
Sbjct: 95 KSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D + +VG+ + + +R+ EL + ++ N+YIKNLG+ +D
Sbjct: 154 AIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFT----------NVYIKNLGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L++LF FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKHKFGQMK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + VNF+ +DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N+++KNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + ++V
Sbjct: 112 SKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + +R+A L A+
Sbjct: 171 GRFKSRRDRQAELGAR 186
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 210/537 (39%), Positives = 276/537 (51%), Gaps = 112/537 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA
Sbjct: 203 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 263 TLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D +DDEKL+ELFS FGTITS KVMRD
Sbjct: 323 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEK 382
Query: 169 -------------------------------------GISKGSGFVAFSTPEEASRALAE 191
G SKG GFV FS+P+EAS+A+ E
Sbjct: 383 EKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTE 442
Query: 192 MNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGL 247
MN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M P G
Sbjct: 443 MNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGP 502
Query: 248 GQQFLY--GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR 305
GQQ GQ PQ G +PG RP P P P GQQG R
Sbjct: 503 GQQGFIPAGQRGGMPFAPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG-----R 547
Query: 306 GAGPVQQTQ---QPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDM 358
G GP QQ Q +P+ Q P P G Y M F GAG VP + M
Sbjct: 548 GMGPNQQIPPNFQGIPMGAMQGPGGIPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPM 602
Query: 359 GAGIPRRDASVG----------------------------QPMPITALSTA--LANASPE 388
G GI G + +P T TA L+ P
Sbjct: 603 GQGIRGPGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPP 662
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L LLE EAL+AKV EA+ V
Sbjct: 663 QQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSV 719
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 129 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 189 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + DE+ +++F +FG ITS + RD G S+G GFV FST + A A+ EMN
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + LYV AQ+K ER L+ Q+ R
Sbjct: 296 KEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 113 LNYTLIKGKPCRIMWSQR 130
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 259/482 (53%), Gaps = 39/482 (8%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L ND+++ V F++K ER + KF N+++K+LD+ T+E +K F ++G I S +M
Sbjct: 194 LFNDRKLHVATFIKKSER-SANNDDKFTNLYMKHLDDDITEELVKLKFSQFGPIVSVKIM 252
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
R DG S FGFV+F+N + A KA E ++G + YV +AQKK ER+Q L+ E+
Sbjct: 253 RRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARAQKKEERKQYLQRLHEEK 312
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
E + K N+YIKN+ D +DD+ L+ F+E+G ITS KVMRD GIS+G GFV +ST
Sbjct: 313 RNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVMRDDKGISRGFGFVCYST 372
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
PEEA + M G M KPLYVA+ QRKEERRA+LQ F+Q+ + V P M P
Sbjct: 373 PEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAKLQQHFAQLARM-----VGPTNSMIP 427
Query: 242 PGPSGLGQQFLYGQAPPAII---PPQAGF-----GYQQQLVPGMRPAGAPMPNFFVPVVS 293
G +Y P A I PP+ GF G + P M P+ +P P++
Sbjct: 428 TGYPQ-----VYFAHPNAHIPQGPPRHGFVYPPMGLSHEWRPNMFPSAPNLPQIHSPMMP 482
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP 353
+ R R G PLP H M HA +M F+
Sbjct: 483 NSPRHYRSNRGRMGG----NMMPLPHAVHAMNYVTHAQPTKEFMSMPRQRFNHSKYFSND 538
Query: 354 VPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLYPLVEQLERDA 409
V M G+ ++ Q P++ + S+ LA+A P +Q+ LLG LYPLVE+ + +
Sbjct: 539 V---MANGL-----AIHQSDPVSTMNDSFSSYLASAPPAEQKNLLGNRLYPLVERHQPEL 590
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA----QQQANNPADQLASLS 465
A+K+TGMLLE+D +EV+ LL S E L KV E +++L++ +A +P + S S
Sbjct: 591 ASKITGMLLELDNSEVVTLLCSSEMLSVKVDECVQLLQATKPKTEDHEALHPGFMMESPS 650
Query: 466 LN 467
+N
Sbjct: 651 VN 652
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 13/207 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A ++ N+FVKNL+ S + L+++F ++G + S V ++ DG S+ +GFV F +
Sbjct: 120 RDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFAS 179
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A +A+ LNG F+DR+ +V KKSER DKF NLY+K+
Sbjct: 180 QESADEAIGNLNGSLFNDRKLHVATFIKKSERS-----------ANNDDKFT--NLYMKH 226
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D I +E +K FS+FG I S K+MR P G S G GFV+F PE A +A M+G ++
Sbjct: 227 LDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLG 286
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+KEER+ LQ + R
Sbjct: 287 SKALYVARAQKKEERKQYLQRLHEEKR 313
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 34/251 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
++V +L E +E L F + GT+TS V RD +S +G+VN+ + DA A++ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+ V + + + + G N+++KNL +S+D+ L+
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVG----------------NIFVKNLNNSVDNASLQ 147
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELFS+FG + SCKV ++ G S+G GFV F++ E A A+ +NG + + L+VA +
Sbjct: 148 ELFSKFGDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIK 207
Query: 210 KEERRARLQAQFS----------------QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 253
K ER A +F+ +++ GP V ++ P G S LG F+
Sbjct: 208 KSERSANNDDKFTNLYMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDG-SSLGFGFVS 266
Query: 254 GQAPPAIIPPQ 264
Q P + I Q
Sbjct: 267 FQNPESAIKAQ 277
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 194/490 (39%), Positives = 276/490 (56%), Gaps = 63/490 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN + D+ L++IF ++G S
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKA----------------VEALNGKKFDDREWYVG 102
VM D G+SK FGFVNFE ++A KA V +NGK+ + R YVG
Sbjct: 221 KVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVG 280
Query: 103 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 162
+AQK+ ER+ ELK +FEQ +E V ++QG+NLY+KNL D IDD++L++ FS +GTITS K
Sbjct: 281 RAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAK 340
Query: 163 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 222
VM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+
Sbjct: 341 VMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYM 399
Query: 223 Q----MRPV---AMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP 275
Q +R + +G PP PP P + Y +P + P + Q
Sbjct: 400 QRLATLRALPGPLLGSFQPPPGYFLPPIPQPQTRATFYSPSPVVPVRPATRWSAQPS--- 456
Query: 276 GMRPAGAPM------PNFFVPVVSQGQQGQR------PGGRRGAGPVQQTQQPL----PI 319
RP P+ P + +S +Q P +R A QT P
Sbjct: 457 --RPPPTPILRAAVPPRRLLTNISTMRQASTQVPRVPPQAQRVANIGTQTVSARVPSSPT 514
Query: 320 MPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL 378
+P P Y+Y RN+Q G M PV V G P V P+TA
Sbjct: 515 LPRGTP----QYKYSSSVRNVQPM------GHMPPV-VAPQVGEP--AVHVQGQEPLTA- 560
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
+ LA A P++Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLESP++L++K
Sbjct: 561 -SVLAAAPPQEQKQMIGERLYPLIYAIHPSLAGKITGMLLEIDNSELLLLLESPDSLRSK 619
Query: 439 VAEAMEVLRS 448
+ EA+ VL++
Sbjct: 620 MEEAVAVLQA 629
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 129/217 (59%), Gaps = 27/217 (12%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG + + ERE E +AM+ T N+YIKN GD +D
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREAEFGA---KAMEFT-------NVYIKNFGDDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR----------------A 188
D++L+E+FS+FG S KVM D +G SKG GFV F EEA + A
Sbjct: 204 DDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQA 263
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+A+MNGK I + +YV AQ++ ER++ L+ +F Q++
Sbjct: 264 VADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIK 300
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
++ER A A+
Sbjct: 175 SRKEREAEFGAK 186
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 210/535 (39%), Positives = 276/535 (51%), Gaps = 110/535 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA
Sbjct: 203 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 263 TLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D +DDEKL+ELFS FGTITS KVMRD
Sbjct: 323 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEK 382
Query: 169 -----------------------------------GISKGSGFVAFSTPEEASRALAEMN 193
G SKG GFV FS+P+EAS+A+ EMN
Sbjct: 383 EKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 442
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQ 249
+M+ KPLYVA+AQRK+ RR++L+A + + P+ M P G GQ
Sbjct: 443 QRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQ 502
Query: 250 QFLY--GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 307
Q GQ PQ G +PG RP P P P GQQG RG
Sbjct: 503 QGFIPAGQRGGMPFAPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG-----RGM 547
Query: 308 GPVQQTQ---QPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGA 360
GP QQ Q +P+ Q P P G Y M F GAG VP + MG
Sbjct: 548 GPNQQIPPNFQGIPMGAMQGPGGIPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQ 602
Query: 361 GIPRRDASVG----------------------------QPMPITALSTA--LANASPEQQ 390
G+ G + +P T TA L P QQ
Sbjct: 603 GMRGPGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQ 662
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 663 KQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSV 717
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 129 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 189 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + DE+ +++F +FG ITS + RD G S+G GFV FST + A A+ EMN
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + LYV AQ+K ER L+ Q+ R
Sbjct: 296 KEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 113 LNYTLIKGKPCRIMWSQR 130
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/243 (54%), Positives = 183/243 (75%), Gaps = 1/243 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ K+V+VG FLR+ ER + + + KF NVFVKNLDE+ +D+++K +F E+GT+ S ++
Sbjct: 192 MLLEGKKVYVGPFLRRSERSSDS-EVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCII 250
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD +GKSK FGF+NFE + AA AV+ALNGK + +E YVG+AQKK+ERE L+ +FE+
Sbjct: 251 MRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEE 310
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
E + K+QG+NLY+KNL D IDDE L+ FS+FGTITS KVM D +G S+G GFV ++
Sbjct: 311 LRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYA 370
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEA+RA+ EMNG+MI KP+YVA+AQR++ RRA+L+ Q+ Q + GP P M+
Sbjct: 371 SPEEATRAVTEMNGRMIKGKPIYVALAQRRDVRRAQLEQQYQQRVAMPPGPRGPMAPGMF 430
Query: 241 PPG 243
PPG
Sbjct: 431 PPG 433
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 123/201 (61%), Gaps = 13/201 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD S ++ L F +G I S V +D G+SK +GFV+FE + A
Sbjct: 125 KSGVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARL 184
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ YVG ++SER + + +F N+++KNL +++
Sbjct: 185 AIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKF-------------TNVFVKNLDEAVS 231
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+++K +F+E GT+ SC +MRD G SKG GF+ F PE+A+ A+ +NGK + K LYV
Sbjct: 232 DDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYV 291
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+A+F ++R
Sbjct: 292 GRAQKKAEREAMLRAKFEELR 312
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
++++V +LD T+ L ++F + G + S V RD +S + +VN+ + D A A
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAER 97
Query: 88 ALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
AL+ + VG+ + S R+ + K V N++IKNL S+D+
Sbjct: 98 ALDQLNYTP---LVGRPMRIMWSHRDPAFR-------KSGVG-----NIFIKNLDRSVDN 142
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV +D G SKG GFV F E A A+ ++NG ++ K +YV
Sbjct: 143 KALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVG 202
Query: 206 VAQRKEERRARLQAQFSQM 224
R+ ER + + +F+ +
Sbjct: 203 PFLRRSERSSDSEVKFTNV 221
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 193/581 (33%), Positives = 276/581 (47%), Gaps = 169/581 (29%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN+ TD++ + +F +G +TS+
Sbjct: 215 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSS 274
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 275 SLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSY 334
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------------ 166
E A E K+QG+NLYIKNL D +DDEKL++LF++FG ITS KVMRD
Sbjct: 335 EAARMEKASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSAKVMRDNATESGNEDEGS 394
Query: 167 ---------------------------------------PSGISKGSGFVAFSTPEEASR 187
P G SKG GFV FS P++A++
Sbjct: 395 SDDKENEPKKEEGEEKAEEAKSEDKEDADKKADKKSDKKPHGKSKGFGFVCFSNPDDATK 454
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPG 243
A+AEMN +M+ KPLYVA+AQRK+ R+++L+A + M + P+ M PP
Sbjct: 455 AVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPV 514
Query: 244 PSGLGQQFLYGQAPPAIIPPQAGF---------------GYQQQL--------------V 274
GQQ ++ Q + PQ G GY QQ +
Sbjct: 515 FYAAGQQPVFPQGGRGMAFPQPGMAMPAVQGGRPGQFPGGYPQQGGRGGLPQQMPPVYGI 574
Query: 275 PGMRPAGAPMPN----FFVPVVSQGQQ--------------------------------- 297
PG P GAP P F+ + Q QQ
Sbjct: 575 PGQFPPGAPYPQPGNPQFLAAIQQVQQATMGGGRGGPQGGRGPVPQGMPMPGPGMPGFPP 634
Query: 298 -----GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 352
G +PG RGA P PR + PF G
Sbjct: 635 NARQGGNQPGAGRGANP--------------NAPR-------------NAPFPQG----- 662
Query: 353 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
G G P +D + G + A A ++P QQ+ +LGE ++P ++ ++ + A K
Sbjct: 663 ------GRGAPAQDLNSGS---LIQQQLAAAGSNPGQQKQILGEVIFPKIQAIQPELAGK 713
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
+TGMLLEMD E+++L+E ALKAKV EA+ V + Q
Sbjct: 714 ITGMLLEMDNAELVNLIEDESALKAKVDEALGVYEEYIKAQ 754
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 141 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 200
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 201 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNI 247
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + + D++ ++LF+ FG +TS + RD G S+G GFV F+T E A++A+ ++NG
Sbjct: 248 YVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNG 307
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 308 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 338
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 125 LNYTLIKGRPCRIMWSQR 142
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 180/474 (37%), Positives = 257/474 (54%), Gaps = 56/474 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K + N++VKN+D + T+++ +++F +G ITS
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSI 277
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNFE + AAKAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 278 YLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQY 337
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL + ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 338 EAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVC 397
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTPEEA++A+ EMN +M+ KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 398 FSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA----- 452
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFF 288
GL QF+ YGQ PP G PG MR G P P
Sbjct: 453 ----AAGGLPGQFMPPMFYGQQ--GFFPPN---GRGNAPFPGPNPQMMMRGRGQPFP--- 500
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
+Q RPG QP+P+ + MPP+ + G+NM+
Sbjct: 501 -------EQWPRPG---------PNGQPVPV--YGMPPQFQDFN---GQNMRPQQQQQQQ 539
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQ 404
P R A G +P L+ +ANA E Q+ +LGE LY + +
Sbjct: 540 QQQQQQQQQQRGYYPNRPA--GGNVPAKDLAALIANAPLEAQKRILGEELYQRIVATGKA 597
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
E +AA K+TGM+L ++ E+L LL+ E EA+ + N A
Sbjct: 598 QEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAA 651
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 121/208 (58%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 144 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYE 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E++NG +DRE YVGK K +RE +L + MK N+Y+K
Sbjct: 204 TEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL-----EEMKANY-----TNIYVK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + +++ +ELF+ FG ITS + +D G SKG GFV F E A++A+ E+N K I
Sbjct: 254 NIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER L+ Q+ +R
Sbjct: 314 NGQKIYVGRAQKKRERTEELKKQYEAVR 341
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74
+++ E+ I +++V L+ S + L +IF G + S V RD KS + +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG----------------NI 157
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
+IKNL +ID++ L + FS FG I S KV D G SK GFV + T E A A+ +NG
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 195 KMIVSKPLYVAVAQRKEERRARLQ 218
++ + +YV K++R ++L+
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLE 241
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 195/545 (35%), Positives = 277/545 (50%), Gaps = 111/545 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN+ +D++ +++F +YG ITS+
Sbjct: 211 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSS 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAVE L+GK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 271 SLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGS--- 174
E A E +K+QG+NLYIKNL D +DDEKL+++F+EFG ITS KVMRD PS S
Sbjct: 331 EAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEK 390
Query: 175 ----------------------------------------GFVAFSTPEEASRALAEMNG 194
GFV FS P++A++A+AEMN
Sbjct: 391 EEDNEKEPEAKEEAKETEEEDADKKADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQ 450
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ 250
+MI KPLYVA+AQRK+ R+++L+A + M + P+ M PP
Sbjct: 451 RMINGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPP-------- 502
Query: 251 FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRG 306
YGQ P I PQ G G +P P P + V G+ GQ PG G RG
Sbjct: 503 VFYGQQPGFI--PQGGRG-----MP------FPQPGIGMGGVQGGRPGQFPGYPQQGGRG 549
Query: 307 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 366
A P QQ + MP Q PP+ P G P G G+P +
Sbjct: 550 AVP-QQIPPNMYGMPGQFPPQYGQPGTPQFMAAMQAQQAAMGGRGAP---QGGRGVPPPN 605
Query: 367 ASV--------------------------------GQPMPITALSTALANASPEQQRTLL 394
A G+ + L LA A P QQ+ +L
Sbjct: 606 AGPGGMPGYPPNNRQGAGRGNGRNNNANGPNQAGRGEGNNASVLQAQLAGAQPAQQKQIL 665
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
GE ++P ++ + + A K+TGMLLEM+ +E+++L+E ALKAKV EA+ V + Q
Sbjct: 666 GEIIFPKIQAINSELAGKITGMLLEMENSELVNLIEDDVALKAKVDEALAVYDEYVKSQG 725
Query: 455 NNPAD 459
N A+
Sbjct: 726 NEGAE 730
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 137 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 196
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A +A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 197 TDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNI 243
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ +ELF ++G ITS + RD G S+G GFV F+T E A++A+ E++G
Sbjct: 244 YVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHG 303
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 304 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 121 LNYTLIKGRPCRIMWSQR 138
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 186/459 (40%), Positives = 256/459 (55%), Gaps = 69/459 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K F NV+VKN+D ++E+++K+F YG ITS
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSL 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNFE+ + A KAVE LN K + ++ YVG+AQKK ER +ELK Q+
Sbjct: 261 HLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NL++KNL DSID KL+E F FGTITS +VM D G SKG GFV
Sbjct: 321 EAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVC 380
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--PVAMGPSV 233
FS+PEEA++A+ EMN +M KPLYVA+AQRK+ RR++L+ Q +QMR A +
Sbjct: 381 FSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI 440
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P + PP YGQ P PP G P P P VP
Sbjct: 441 PGQ--FIPP--------MFYGQQ-PGFFPPNG---------RGSAPFPGPNPQMMVP--- 477
Query: 294 QGQ----QGQRPGGRRGAGPVQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGA 348
+GQ QGQ P AGP QP+P+ + +PP G GR + +
Sbjct: 478 RGQIPPPQGQWP----RAGP---NGQPVPV--YGIPPVYGDFAAANGGRQQRGY------ 522
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER- 407
P R G+P L+ LA+A +QQ+ +LGE LYP + R
Sbjct: 523 -------------YPNRQNQKGRPQ--KDLAALLASAPVDQQKRILGEELYPKIVSTGRA 567
Query: 408 ---DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+AA K+TGM+L++D E+L LLE +A+
Sbjct: 568 QEPEAAGKITGMMLDLDNQEILALLEDDALFNNHFEDAL 606
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 112/199 (56%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G SKCFGFV++E A+ A A+E +
Sbjct: 139 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENV 198
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE YVGK K +RE +E+K F N+Y+KN+ +E
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANF-------------TNVYVKNIDLGFSEE 245
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
++++LF +G ITS + +D G SKG GFV F + E A +A+ E+N K I + LYV
Sbjct: 246 EMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGR 305
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ R
Sbjct: 306 AQKKRERIEELKRQYEAAR 324
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VNF +D KA+E
Sbjct: 51 SLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEE 110
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN D R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 111 LNYSLIDGRPCRIMWSQRDPSLRRNGEG----------------NIFIKNLHPAIDNKAL 154
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + +YV
Sbjct: 155 HDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHV 214
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 215 SKKDRESKFE 224
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 263/471 (55%), Gaps = 51/471 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVG F + ER E +F NVF+KNL D L ++FGE+G++ S
Sbjct: 162 MLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSV 221
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFV+FE + A K VE L+ K+F+ ++ +VG+AQKK+ER+ ELK +F
Sbjct: 222 ALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKF 281
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---GISKGSG 175
E+ E ++QG+NLY+KNL DSI D+ L+E F+ +G ITS KVM D SKG G
Sbjct: 282 EKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFG 341
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP 235
FV F++ EEA++A+ EMNG++I SKPLYVA+AQRK+ER+A LQ Q+ Q M
Sbjct: 342 FVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHLQQQYMQRVTTGM------ 395
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAI-----------IPPQAGFGYQQQLVPGMRPAGAPM 284
R+ +P G ++ PP I P + Y Q + +
Sbjct: 396 RLQAFPTNQPQYGNLYM----PPPIQQHPFRMSIRPTPRWSQVKYDQLVKLRSKIRFLIK 451
Query: 285 PNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF 344
P+ + P+V +GQ PGG R V+ I P P + R Q +
Sbjct: 452 PSQYGPMV----RGQMPGGPRAQNGVRG------IAPITRFPANNYTARAGSRPNQSIIY 501
Query: 345 DMGAGSMLPVPVDMGAGIPRRDASVGQP------MPITALSTALANASPEQQRTLLGESL 398
G + LP P + A IP A+ QP P+ A T LA A P++Q+ LLGE L
Sbjct: 502 KPGVRNPLPTPAE--AQIPAEQAA--QPKAPDTEQPLNA--TILAAAPPQEQKQLLGERL 555
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES---PEALKAKVAEAMEVL 446
YP + QL + K+TGMLLE++ +E+L +L++ P L+ KV EA+ VL
Sbjct: 556 YPSIRQLYPELCGKITGMLLEIENSELLAMLDTKSNPGLLQEKVQEAVTVL 606
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 120/208 (57%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD++ ++ L F +G I S V + G+SK +GFV+FE
Sbjct: 88 QRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGESKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E L+G +D++ +VG+ + + ER +E + +Q N++IK
Sbjct: 148 TEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFT----------NVFIK 197
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL DD KL E+F E G++ S + D +G S+ GFV+F T E A + + +++ K
Sbjct: 198 NLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEF 257
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F +++
Sbjct: 258 EGKKIFVGRAQKKAERQAELKVKFEKLK 285
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 25/198 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
TVA +++V +L T+ L F + G + S V RD +S + +VNF+
Sbjct: 3 TVAPSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRP 62
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLY 135
+DA +A++ +N FD ELKG+ + M D + G+ N++
Sbjct: 63 EDAERAIDTMN---FD-----------------ELKGKAIRIMWSQRDPALRKSGVGNIF 102
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL +ID++ L + FS FG I SCKV + +G SKG GFV F T E A +A+ +++G
Sbjct: 103 IKNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGM 162
Query: 196 MIVSKPLYVAVAQRKEER 213
++ K ++V + + ER
Sbjct: 163 LMNDKKVFVGRFKSRGER 180
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 185/459 (40%), Positives = 257/459 (55%), Gaps = 68/459 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K F NV+VKN+D ++E+++ +F YG ITS
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSL 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNFE+ + A KAVE LN K + + YVG+AQKK ER +ELK Q+
Sbjct: 261 HLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NL++KNL DSID KL+E F FGTITS +VM D G SKG GFV
Sbjct: 321 ETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVC 380
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--PVAMGPSV 233
FS+PEEA++A+ EMN +M KPLYVA+AQRK+ RR++L+ Q +QMR A +
Sbjct: 381 FSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI 440
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P + PP YGQ P PP G P P P VP
Sbjct: 441 PGQF--IPP--------MFYGQQP-GFFPPNG---------RGSAPFPGPNPQMMVP--- 477
Query: 294 QGQ----QGQRPGGRRGAGPVQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGA 348
+GQ QGQ P AGP QP+P+ + +PP G GR + + + G
Sbjct: 478 RGQIPPPQGQWPR----AGP---NGQPVPV--YGIPPVYGDFAAANGGRQQRGYYPNRGQ 528
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER- 407
G P++D L+ LA+A +QQ+ +LGE LYP + + R
Sbjct: 529 NQ---------KGRPQKD-----------LAALLASAPVDQQKRILGEELYPKIVSMGRA 568
Query: 408 ---DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+AA K+TGM+L++D E+L LLE +A+
Sbjct: 569 QEPEAAGKITGMMLDLDNQEILALLEDDALFNNHFEDAL 607
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 111/199 (55%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G SKCFGFV++E A+ A A+E +
Sbjct: 139 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENV 198
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE YVGK K +RE +E+K F N+Y+KN+ +E
Sbjct: 199 NGMLLNDREVYVGKHVSKKDRESKFEEMKANF-------------TNVYVKNIDLGFSEE 245
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+++ LF +G ITS + +D G SKG GFV F + E A +A+ E+N K I + LYV
Sbjct: 246 EMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGR 305
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ R
Sbjct: 306 AQKKRERIEELKRQYETAR 324
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VNF +D KA++
Sbjct: 51 SLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDD 110
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN D R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 111 LNYSLIDGRPCRIMWSQRDPSLRRNGEG----------------NIFIKNLHPAIDNKAL 154
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + +YV
Sbjct: 155 HDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHV 214
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 215 SKKDRESKFE 224
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 264/481 (54%), Gaps = 74/481 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F N++VKN+D + ++E +K+F YG ITS
Sbjct: 202 MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSI 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVNFEN D A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 262 YLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NL++KNL D+ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 322 EAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVC 381
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
F+TPEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q Q R +M
Sbjct: 382 FTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQI-QAR---------NQMR 431
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFF 288
M GL QF+ YGQ PP G PG MR G P P
Sbjct: 432 MQNAAAGGLPGQFMPPMFYGQQ--GFFPPN---GRGNAPYPGPNPQMMMRGRGQPFP--- 483
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
+Q RPG QP+P+ + +PP+ F D
Sbjct: 484 -------EQWPRPG---------PNGQPVPV--YGIPPQ--------------FQQDFNG 511
Query: 349 GSMLPVPVDM---GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV--- 402
+M P G P R+ + + L+ +++ +QQ+ +LGE LYP +
Sbjct: 512 QNMRPQQQQQQPRGGYYPNRNQTNKRD-----LAAIISSVPQDQQKRILGEELYPKIVAT 566
Query: 403 -EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQL 461
+ E +AA K+TGM+L ++ E+L LL+ E +A+ + +A A++
Sbjct: 567 GKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEEQ 626
Query: 462 A 462
A
Sbjct: 627 A 627
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 128 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYE 187
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A+E +NG +DRE +VGK K +RE +E+K F N+
Sbjct: 188 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANF-------------TNI 234
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + +E ++LF+ +G ITS + +D G SKG GFV F + A +A+ E+N
Sbjct: 235 YVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELND 294
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + +YV AQ+K ER L+ Q+ R
Sbjct: 295 KEINGQKIYVGRAQKKRERLEELKKQYEAAR 325
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 78
E+ + +++V L+ S + L +IF G ++S V RD KS + +VN+
Sbjct: 42 ESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHK 101
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+D KA+E LN + R + +Q+ + G N++IKN
Sbjct: 102 YEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKN 145
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG ++
Sbjct: 146 LHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 205
Query: 199 SKPLYVAVAQRKEERRAR---LQAQFSQM 224
+ ++V K++R ++ ++A F+ +
Sbjct: 206 DREVFVGKHISKKDRESKFEEMKANFTNI 234
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 181/459 (39%), Positives = 262/459 (57%), Gaps = 51/459 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+ +V+VG + +++R++ + F NV+VKN+D ++E++K++F +GT+TS
Sbjct: 211 MLLNNNEVYVGPHVARRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSF 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKS+ F FVN+E + A K++E+LN + + ++ YVG+AQKKSER +ELK Q+
Sbjct: 271 YLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQY 330
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K QG+NL++KNL DSIDDEKLKE F FGTI+S KVM D SG SKG GFV+
Sbjct: 331 EAARIEKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVS 390
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--PVAMGPSV 233
FS+PEEASRA++EMN M+ KPLYVA+AQRK+ RR++L+ Q +Q+R A +
Sbjct: 391 FSSPEEASRAISEMNQHMLAGKPLYVALAQRKDVRRSQLEQQIQARNQLRLQQAAAAGGL 450
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPN--FFVPV 291
P + + P P F+YGQ P Q L PG R P+PN F +P
Sbjct: 451 PGQ---FIPTP------FIYGQQP-------------QFLPPGAR---GPLPNQPFLIPR 485
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM 351
QG Q GG+ G Q LP Q P R + P + G
Sbjct: 486 PGQGLPPQAAGGQWVGGRPGQPAYGLPQEFQQFP---QGGRGGFRGGRGNGPRNQGGRGP 542
Query: 352 LP--VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER-- 407
P P+D P G + L++ L N EQQ+ LLGE LY + +
Sbjct: 543 APNAAPID-----PNAQPGAGN---VAQLASILPNVPVEQQKRLLGEELYQRIVSTGKAQ 594
Query: 408 --DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
++A K+TGM+L+++ E+L LLE+ E K +A +
Sbjct: 595 DPESAGKITGMMLDLENQEILSLLENEELFKQHFDDAFQ 633
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNL + ++ L F +G I S V D G+SK FGFV+FE+ + A A+E +
Sbjct: 149 NVFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENV 208
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ E YVG + +R+ +L +E + F N+Y+KN+ +E++K
Sbjct: 209 NGMLLNNNEVYVGPHVARRDRQSKL--------EEVIKSF--TNVYVKNIDLEASEEEVK 258
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF+ FGT+TS + +D G S+G FV + E A +++ +N + K LYV AQ+
Sbjct: 259 ELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQK 318
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 319 KSERLEELKKQYEAAR 334
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD +S + +VN+ N D KA++
Sbjct: 61 SLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDE 120
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + + +G N++IKNL +ID++ L
Sbjct: 121 LNYSVVKGQPIRIMWSQRDPAKRRNGEG----------------NVFIKNLHPAIDNKAL 164
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F +PE A A+ +NG ++ + +YV
Sbjct: 165 HDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHV 224
Query: 209 RKEERRARLQ 218
+ +R+++L+
Sbjct: 225 ARRDRQSKLE 234
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 155/181 (85%)
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
+AV+ LNGKKFDD+EWYVG+AQKKS RE ELK +FE+ ++E DK+Q NLY+KNL DS+
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
DD+KL+ELF+E+GTITSCKVMRD +G+S+GSGFVAF + E+ASRALAEMN KM+ SKPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 204 VAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 263
VA+AQRKE+R+ARLQAQFSQ+RPV + PSV PRMPM+PPG G+GQQ YGQ PPA I
Sbjct: 121 VALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINT 180
Query: 264 Q 264
Q
Sbjct: 181 Q 181
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 14/131 (10%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKF-------------NNVFVKNLDESTTDEDLKKIF 49
+DK+ +VG +K RE + +K KF N+++KNLD+S D+ L+++F
Sbjct: 11 FDDKEWYVGRAQKKSGRE-MELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELF 69
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
EYGTITS VMRD +G S+ GFV F++A+DA++A+ +N K + YV AQ+K +
Sbjct: 70 AEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKED 129
Query: 110 REQELKGQFEQ 120
R+ L+ QF Q
Sbjct: 130 RKARLQAQFSQ 140
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 263/469 (56%), Gaps = 47/469 (10%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ DKQ++VG F++K +R ++ N+++KNLD ++ L++ F +G I S V+ +
Sbjct: 165 VGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAK 224
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G SK FGFVN++N DDA +A+EA+NG K + YV +AQKK+EREQ L QFE+
Sbjct: 225 DNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKR 284
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
KE + K++G N+Y+KN+ D + DE+L++ FS G ITS K+MRD GISKG GFV FSTP
Sbjct: 285 KEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTP 344
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 242
EEA++A+ +G M KPLYVA+AQRKE+R+A+LQ Q++Q GPS YPP
Sbjct: 345 EEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGGYPP 404
Query: 243 GPSGLGQQFLYGQAPPAI--IPPQAGFGYQQQ-LVPGMRPAGAPMP-NFF----VPVVSQ 294
Y A I +PP+AG YQ + PG G +P F VP VS
Sbjct: 405 ---------YYYAATGVISHVPPRAGLMYQHLPMRPGWGANGFALPARSFQQSPVPAVSN 455
Query: 295 GQQGQRPG-GRRGAGPV--------------QQTQQPLPIMPHQMPPRGHAYRYPLGRNM 339
+ R GR P+ QQ QP+ I G A P GR
Sbjct: 456 NTRQHRQNRGRLNGNPIAQGNTHSVTYLPQAQQISQPV-ISSSTQQRTGQAKYLPSGRQR 514
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLY 399
DM GS S L + LA A+PEQQ+ +LGE LY
Sbjct: 515 -----DMEKGSGSSS---------SGSNSGRGSQGSEMLHSMLAGAAPEQQKEILGEHLY 560
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
LV +L+ AAK+TGMLLEMD E+L LLESPE+L AKV EA++VL++
Sbjct: 561 MLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKN 609
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 119/207 (57%), Gaps = 12/207 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K N+FVKNL ES + L+ +F +YG I S+ V+ DGKSK +GFV FE+
Sbjct: 90 RDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFES 149
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ + A+E LNG D++ YVGK KKS+R L G + NLY+KN
Sbjct: 150 EESSNVAIEKLNGSTVGDKQLYVGKFVKKSDR--ILPGPDARYT----------NLYMKN 197
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L + + L+E FS FG I S + +D G+SKG GFV + P++A RA+ MNG +
Sbjct: 198 LDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLG 257
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER L QF + R
Sbjct: 258 SKILYVARAQKKAEREQILHHQFEEKR 284
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L + +D L F ++ ++ S V +D GKS C+G+VNF + DA +A+E
Sbjct: 13 SLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIEL 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V +++ + + G NL++KNL +SID+ L
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDARKNAIG----------------NLFVKNLPESIDNAGL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F ++G I S KV+ G SKG GFV F + E ++ A+ ++NG + K LYV
Sbjct: 117 QDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFV 176
Query: 209 RKEER 213
+K +R
Sbjct: 177 KKSDR 181
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L ++ D L + FS+F ++ S +V +D S G S G+V F +P++A RA+
Sbjct: 13 SLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIEL 72
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
N + K + V ++R + R
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDAR 95
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 191/493 (38%), Positives = 271/493 (54%), Gaps = 57/493 (11%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+V+VG F + R E +F NV++KN + E L+K+F ++G ITSA
Sbjct: 33 MLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSA 92
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKG 116
VM D DGKSK FGFV FEN +DA KAV ++ + +R+ YV +AQKK+ER ELK
Sbjct: 93 AVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKR 152
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++EQ E + ++QG+NLY+KNL D+++D+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 153 RYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGF 212
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
V F P+EA++A+ EMNGKM+ +KPLYVA+AQRKE+R+A+L +Q+ Q R ++
Sbjct: 213 VCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGS 271
Query: 237 MP--MYPPGPSG------LGQQFLYGQAPPAIIP---------------PQAGFGYQQ-- 271
MP +Y PG G L Q + P A IP AGFG Q
Sbjct: 272 MPGTVYTPGTGGFFVSSTLQNQRAF--MPTATIPGAQMRGTTPRWNTIGAAAGFGVQSPY 329
Query: 272 ---------QLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 322
G RPA + V + QQGQ G+ G Q L
Sbjct: 330 MVQSGGYGQAGRGGTRPAASS-----AAVAMRAQQGQYGPGQTGVTRGGPQAQRLTAGGA 384
Query: 323 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP-----RRDASVGQPM-PIT 376
+ +G + GR Q P G M+ G P ++++ V Q P+T
Sbjct: 385 MVQNQGTRSQQMGGRQTQ--PGKPNQGQMMYSSYSAITGRPGQVQSQQNSIVIQGQEPLT 442
Query: 377 ALSTALANASPEQQRTLLGESLYPLVEQLERD-AAAKVTGMLLEMDQTEVLHLLESPEAL 435
A LA A P++Q+ +LGE +YPL+E++ + K+TGM+LEMD +E+L +LE+ E L
Sbjct: 443 A--HMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELL 500
Query: 436 KAKVAEAMEVLRS 448
++KV+EA VL S
Sbjct: 501 QSKVSEAASVLAS 513
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 101/168 (60%), Gaps = 12/168 (7%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V D + SK +GFV+FE + A KA+E +NG + ++ YVGK Q ++ R +E
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLRE------ 54
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
M ET +F N+YIKN D +D E L++LFS+FG ITS VM D G SKG GFVAF
Sbjct: 55 --MGETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAF 110
Query: 180 STPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 225
PE+A +A+ EM+ + + LYV AQ+K ER A L+ ++ Q +
Sbjct: 111 ENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 158
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 182/469 (38%), Positives = 261/469 (55%), Gaps = 81/469 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI+ ++V VGHF+R+ +R + + N ++KN+ D L + F ++G + SA V
Sbjct: 191 MLIDGQEVQVGHFMRRNDRPDI---DSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATV 247
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--------REWYVGKAQKKSEREQ 112
R+ ++ FGF+NF + A AVEALNGK++ ++ YVG+AQKKSERE+
Sbjct: 248 SREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERER 307
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 171
EL+ +FE + + KFQG+NLY+KNL DS+ D+ L++ F+ GTITS +VM+D G S
Sbjct: 308 ELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRS 367
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGP 231
+G GFV +STPEE++RA+ EMNGK+I +KP++VA+AQR+E RRA+L+AQ + A GP
Sbjct: 368 RGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALAQRREVRRAQLEAQHANR---AGGP 424
Query: 232 SVPP--RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV 289
P R PM P GY PGM P +
Sbjct: 425 GQPGMMRAPMGAP------------------------MGY-----PGM-------PMYM- 447
Query: 290 PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
QRPG G P P+MP M P G R P+ M
Sbjct: 448 ---------QRPGPGGGMQPA------YPMMPQMMGPGGR--RVPMAGRGGRGRGPMPGP 490
Query: 350 SMLPVPVDM---GAGIPRRD---ASVGQPMPI----TALSTALANASPEQQRTLLGESLY 399
P+ + AG P ++ G P I ++ALA+ASPE Q+ ++GE LY
Sbjct: 491 GQQPIKFNQQVRNAGPPMQNQPPHQQGAPQAIPHEGALTASALASASPEVQKNMIGERLY 550
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
PL+ Q + + A K+TGMLLEMD +E+LHLLESP+AL +K++EA++VL +
Sbjct: 551 PLIHQSQPELAGKITGMLLEMDNSELLHLLESPDALNSKISEALQVLEA 599
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 24/213 (11%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNF 76
+R+ ++ N+FVKNL+E+ ++ L F +G I S V+ D +G S +G+V++
Sbjct: 116 QRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHY 175
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
E A+ A A+E L+G D +E VG ++++R +D + N YI
Sbjct: 176 ETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDRPD-------------IDSW--TNCYI 220
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KN+ DD +L + F++FG + S V R+ + + G GF+ F+ E A A+ +NGK
Sbjct: 221 KNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKE 280
Query: 197 I--------VSKPLYVAVAQRKEERRARLQAQF 221
+++ +YV AQ+K ER L+A+F
Sbjct: 281 YTTTLDGEEITQQIYVGRAQKKSERERELRAKF 313
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + L +IF G + S V RD +S + +VNF DA +A++
Sbjct: 40 SLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDT 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL ++ID+++L
Sbjct: 100 MNFSMIKGKPCRIMWSQRDPSLRRSGVG----------------NIFVKNLNEAIDNKQL 143
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I SCKV+ D G+S G G+V + T E A+ A+ +++G +I + + V
Sbjct: 144 YDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHF 203
Query: 208 QRKEER 213
R+ +R
Sbjct: 204 MRRNDR 209
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
FQ +LY+ +L +++ L E+FS G + S +V RD + S G +V F +A R
Sbjct: 36 FQTPSLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAER 95
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
A+ MN MI KP + +QR R
Sbjct: 96 AMDTMNFSMIKGKPCRIMWSQRDPSLR 122
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 190/464 (40%), Positives = 267/464 (57%), Gaps = 33/464 (7%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ DK+++VG F++K +R ++ N+++KNLD ++ L++ F +G I S V+ +
Sbjct: 165 VADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAK 224
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D +G SK FGFVN++N DDA KA+EA+NG + + YV +AQKK+EREQ L QFE+
Sbjct: 225 DNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQ 284
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
KE + K++G N+Y+KN+ D + DE+L++ FS GTITS K+MRD GISKG GFV FSTP
Sbjct: 285 KEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTP 344
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPS---VPPRMPM 239
EEA++A+ +G M KPLYVA+AQRKE+R+A+LQ Q++Q GPS +P P
Sbjct: 345 EEANKAVNTFHGFMYHGKPLYVALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPP 404
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ-QLVPGMRPAG-APMPNFF----VPVVS 293
Y SG+ +PP+AG YQ L PG G AP F VP VS
Sbjct: 405 YYYAASGVISH----------VPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVS 454
Query: 294 QG--QQGQRPGGRRGAGPVQQTQQPLPIMPHQ-------MPPRGHAYRYPLGRNMQDFPF 344
Q Q G G Q +P + R + + G+ + P
Sbjct: 455 NNTRQHRQNRGKLNGNSIAQGNTHSGTYLPQAQQISQPVISSRDSSTQQRTGQ-ARYIP- 512
Query: 345 DMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 404
+G V G+ ++ G L + LA A+PEQQ+ +LGE LY LV +
Sbjct: 513 ---SGRQRDVEKGSGSSSVGSNSGRGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHK 569
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
L+ AAK+TGMLLEMD E+L LLESPE+L AKV EA++VL++
Sbjct: 570 LKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKN 613
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 120/205 (58%), Gaps = 12/205 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K+ N+FVKNL ES + L+ IF +YG I S+ V+ DGKSK +GFV FE+
Sbjct: 90 RDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFES 149
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ + A+E LNG D+E YVGK KKS+R L G + NLY+KN
Sbjct: 150 EESSKVAIEKLNGYTVADKELYVGKFVKKSDR--ILPGPDARYT----------NLYMKN 197
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L + + L+E FS FG I S + +D +G+SKG GFV + P++A +A+ MNG +
Sbjct: 198 LDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLG 257
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
SK LYVA AQ+K ER L QF +
Sbjct: 258 SKILYVARAQKKAEREQILHHQFEE 282
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L +D L F E+ ++ S V +D GKS C+G++NF + DA +A+E
Sbjct: 13 SLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIEL 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V +++ + + G NL++KNL +SID+ L
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDARKSAIG----------------NLFVKNLPESIDNAGL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F ++G I S KV+ G SKG GFV F + E + A+ ++NG + K LYV
Sbjct: 117 QDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFV 176
Query: 209 RKEER 213
+K +R
Sbjct: 177 KKSDR 181
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + D L + FSEF ++ S +V +D S G S G++ F +P++A RA+
Sbjct: 13 SLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIEL 72
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
N + K + V ++R + R
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDAR 95
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 185/453 (40%), Positives = 252/453 (55%), Gaps = 67/453 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IN+++VFVG F +ER + K+ NVF+KNL E +++ L + +G IT+ +
Sbjct: 159 MMINNQKVFVGPFKSSKERGATQ-EVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCI 217
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGF NFE+AD A AVE NGK F + YVG+AQKK ERE ELK +FE
Sbjct: 218 MTDEKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAELKHKFET 277
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAF 179
K+QG+NLYIKNL DSID +KL+ FS +GTITS KVMRD G SKG GFV +
Sbjct: 278 -------KYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCY 330
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM--GPSVPPRM 237
STP+EAS+A+AEM+G+M+ SKPLYVA AQRK+ RRA+L+AQ ++ + M PP
Sbjct: 331 STPDEASKAVAEMHGRMVGSKPLYVAFAQRKDVRRAQLEAQHTKFKSSRMPVQSIYPPTG 390
Query: 238 PM-YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ 296
P+ YPP G +Y Q P PP+AG+ P+P Q
Sbjct: 391 PIFYPPA----GMPVVYPQMIPR--PPRAGW-------------NGPVP----------Q 421
Query: 297 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPV 356
QGQ P P+ Q Q P+ +PP G+ P R P + P+
Sbjct: 422 QGQYP-------PM-QGQYPIRNPRGGVPPTGNHRNQPRPR-----PDGQQPAAQQPIAQ 468
Query: 357 DMGAGIPRRDASVGQPMPIT-ALSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVT 414
+ + +P + ++ A + P EQQ + LGE LYPL+ + D + K+T
Sbjct: 469 QL----------IAEPQAVQPEVTLATVQSMPREQQNSFLGELLYPLIHASQPDLSGKIT 518
Query: 415 GMLLE-MDQTEVLHLLESPEALKAKVAEAMEVL 446
GMLL+ + E+ L + E L K+ EA++VL
Sbjct: 519 GMLLDSLTVEELFTLYQRTELLADKIKEALDVL 551
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD++ + L F +G I S V+ D SK FGFV++E
Sbjct: 85 QRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILSCKVVTDETNTSKGFGFVHYE 144
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER--EQELKGQFEQAMKETVDKFQGLNLY 135
+ + A KA+ +NG ++++ +VG + ER QE+K N++
Sbjct: 145 SQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQEVK---------------YTNVF 189
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL + + +++L +L G IT+ +M D G SKG GF F + A A+ NGK
Sbjct: 190 IKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENGK 249
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQF 221
M K +YV AQ+K ER A L+ +F
Sbjct: 250 MFSGKVIYVGRAQKKLEREAELKHKF 275
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 104/197 (52%), Gaps = 17/197 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
++++V +L ++ L ++F + G + + + RD + S + ++N+ N+ DA +A++
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + +Q+ + G N++IKNL ++D +
Sbjct: 68 TLNNTPIKGKACRIMWSQRDPSLRKSGIG----------------NIFIKNLDKTVDHKA 111
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D + SKG GFV + + E A +A+A++NG MI ++ ++V
Sbjct: 112 LYDTFSAFGNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPF 171
Query: 208 QRKEERRARLQAQFSQM 224
+ +ER A + +++ +
Sbjct: 172 KSSKERGATQEVKYTNV 188
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 253/457 (55%), Gaps = 61/457 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F NV+VKNL + ++IF +G +TS
Sbjct: 209 MLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSV 268
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFVNFEN + A AV+ +N K+ D ++ YVG+AQKK ER ELK +
Sbjct: 269 HLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DSID EKL+E F FGTITS +VM D +G SKG GFV
Sbjct: 329 ESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVC 388
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 389 FSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA----- 443
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG---MRPAGAPMPNFFVPV 291
+G+ QF+ YGQ P PP G Q P M P G MP
Sbjct: 444 ----AAAGMPGQFMSPMFYGQQ-PGFFPPNGRGGAQGPFPPNPQMMMPRGGQMP------ 492
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGS 350
QGQ P AGP QP+P+ + MPP G + P G+ Q
Sbjct: 493 ---PPQGQWP----RAGP---NGQPVPV--YGMPPVYGGEFNGPNGQRQQ---------- 530
Query: 351 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLE 406
GA P R+ G+P L+ ++ +QQ+ +LGE LYP + + E
Sbjct: 531 -------RGAYPPNRNQKGGRPQ--RDLAAIISTVPVDQQKRILGEELYPKIVATGKAQE 581
Query: 407 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+AA K+TGM+L+++ E+L LLE E + +A+
Sbjct: 582 PEAAGKITGMMLDLENEEILALLEDDELFENHFEDAL 618
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E A+ A A+E +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENV 206
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE +VGK K +RE +E+K F N+Y+KNL +D+
Sbjct: 207 NGMLLNDREVFVGKHVSKRDRESKFEEMKANF-------------TNVYVKNLAPEVDNA 253
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
K +E+F FG +TS + D G S+G GFV F E A A+ EMN K I + LYV
Sbjct: 254 KFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGR 313
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ + R
Sbjct: 314 AQKKRERLDELKRLYESTR 332
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V L+ S + L +IF G ++S V RD KS + +VNF D ++A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D R + +Q+ + G N++IKNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKALH 163
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 164 DTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 210 KEERRAR---LQAQFSQMRPVAMGPSV 233
K +R ++ ++A F+ + + P V
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEV 250
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 191/497 (38%), Positives = 272/497 (54%), Gaps = 57/497 (11%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+V+VG F + R E +F NV++KN + E L+K+F ++G ITSA
Sbjct: 169 MLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSA 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKG 116
VM D DGKSK FGFV FEN +DA KAV ++ + +R+ YV +AQKK+ER ELK
Sbjct: 229 AVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKR 288
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++EQ E + ++QG+NLY+KNL D+++D+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 289 RYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGF 348
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
V F P+EA++A+ EMNGKM+ +KPLYVA+AQRKE+R+A+L +Q+ Q R ++
Sbjct: 349 VCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGS 407
Query: 237 MP--MYPPGPSG------LGQQFLYGQAPPAIIP---------------PQAGFGYQQQL 273
MP +Y PG G L Q + P A IP AGFG Q
Sbjct: 408 MPGTVYTPGTGGFFVSSTLQNQRAF--MPTATIPGAQMRGTTPRWNTIGAAAGFGVQSPY 465
Query: 274 V-----------PGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 322
+ G RP + V + QQGQ G+ G Q L
Sbjct: 466 MVQSGGYGQAGRGGTRPTASS-----AAVAMRAQQGQYGPGQTGVTRGGPQAQRLTAGSA 520
Query: 323 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP-----RRDASVGQPM-PIT 376
+ +G + GR Q P G M+ G P ++++ V Q P+T
Sbjct: 521 MVQNQGTRSQQMGGRQTQ--PGKPNQGQMMYSSYSAITGRPGQVQSQQNSIVIQGQEPLT 578
Query: 377 ALSTALANASPEQQRTLLGESLYPLVEQLERD-AAAKVTGMLLEMDQTEVLHLLESPEAL 435
A LA A P++Q+ +LGE +YPL+E++ + K+TGM+LEMD +E+L +LE+ E L
Sbjct: 579 A--HMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELL 636
Query: 436 KAKVAEAMEVLRSVAQQ 452
++KV+EA VL S Q
Sbjct: 637 QSKVSEAASVLASSKSQ 653
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 12/198 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A KA+E +
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK Q ++ R +E M ET +F N+YIKN D +D E L+
Sbjct: 167 NGMLLEGKKVYVGKFQPRTARLRE--------MGETARRF--TNVYIKNFADELDKEALE 216
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+LFS+FG ITS VM D G SKG GFVAF PE+A +A+ EM+ + + LYV A
Sbjct: 217 KLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRA 276
Query: 208 QRKEERRARLQAQFSQMR 225
Q+K ER A L+ ++ Q +
Sbjct: 277 QKKNERSAELKRRYEQQK 294
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ +
Sbjct: 79 MNFDMMYGKPIRIMWSQRDPSMRRSGAG----------------NIFIKNLDKSIDNKAI 122
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SKG GFV F T E A +A+ ++NG ++ K +YV Q
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQ 182
Query: 209 RKEERRARLQ 218
R ARL+
Sbjct: 183 ---PRTARLR 189
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 184/457 (40%), Positives = 259/457 (56%), Gaps = 25/457 (5%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L+ DKQ++VG F++K +R + T++ N+++KNLD ++ L++ F +G I S V
Sbjct: 162 LVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVA 221
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+D +G SK FGFVNF+N +DA +A+E +NG + + YV +AQKK+EREQ L QFE+
Sbjct: 222 KDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEK 281
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
KE V K++G N+Y+KN+ D++ DE L++ FS GTITS K+MRD GISKG GFV FST
Sbjct: 282 RKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFST 341
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
PEEA++A+ +G M KPLYV++AQRKE+R+A+LQ Q++Q GPS YP
Sbjct: 342 PEEANKAVNSFHGFMFHGKPLYVSLAQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYP 401
Query: 242 PGPSGLGQQFLY-GQAPPAIIPPQAGFGYQ-QQLVPGMRPAG-APMPNFF----VPVVSQ 294
P F Y + PP+AG YQ L PG R G AP F PVVS
Sbjct: 402 P--------FYYTATGVVSHAPPRAGLVYQPMALRPGWRANGSAPPARSFQQSPTPVVSN 453
Query: 295 G--QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 352
+Q ++ GR V Q MP A + + G +
Sbjct: 454 NNTRQHRQNRGRMNGHAVSQGNTHSGTY---MPQAQQASQSAISSRESSTQQRTGQAKYV 510
Query: 353 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
P +S G + L + LANA+PEQQ+ +LGE LY LV++++ + AAK
Sbjct: 511 PSGRHREMEKGSGLSSSGGSLGPEVLHSMLANATPEQQKEILGEHLYMLVQKIKPNLAAK 570
Query: 413 VTGMLLEMDQT-EVLHLLESPEALKAKVAEAMEVLRS 448
+TGMLLEMD E +L++ KAKV+ +VL S
Sbjct: 571 ITGMLLEMDNVEEAFQVLKNS---KAKVS-GQDVLHS 603
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 120/207 (57%), Gaps = 12/207 (5%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K+ NVFVKNL ES + L+ +F ++G I S+ V+ DGKSK +GFV FE
Sbjct: 88 RDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFET 147
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A A+E LNG D++ YVGK KKS+R + D + NLY+KN
Sbjct: 148 EESANAAIERLNGYLVGDKQIYVGKFVKKSDR-----------ISSGPDT-RYTNLYMKN 195
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L I + L+E FS FG I S V +D +G+SKG GFV F PE+A RA+ MNG +
Sbjct: 196 LDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLG 255
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER L QF + R
Sbjct: 256 SKILYVARAQKKAEREQILHQQFEEKR 282
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L +D L F ++ T+ S + RD GKS C+G+VNF + DA +A+E
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V +++ + + G N+++KNL +SID+ L
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDARKSCIG----------------NVFVKNLAESIDNSGL 114
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I S KV+ G SKG GFV F T E A+ A+ +NG ++ K +YV
Sbjct: 115 EDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFV 174
Query: 209 RKEER 213
+K +R
Sbjct: 175 KKSDR 179
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + D +L + FS+F T+ S ++ RD S G S G+V F +P +A RA+
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
N + K + V ++R + R
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDAR 93
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 181/460 (39%), Positives = 255/460 (55%), Gaps = 67/460 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F NV+VKNL + ++IF +G +TS
Sbjct: 209 MLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSV 268
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFVNFEN + A AV+ +N K+ D ++ YVG+AQKK ER ELK +
Sbjct: 269 HLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DSID EKL+E F FGTITS +VM D +G SKG GFV
Sbjct: 329 ESTRLEKLLKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVC 388
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSV 233
FS+PEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q +M+ A +
Sbjct: 389 FSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGM 448
Query: 234 PPR--MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG---MRPAGAPMPNFF 288
P + +PM+ YGQ P PP G Q P M P G MP
Sbjct: 449 PGQFMLPMF------------YGQQ-PGFFPPNGRGGAQGPFPPNPQMMMPRGGQMP--- 492
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMG 347
QGQ P AGP QP+P+ + MPP G + P G+ Q
Sbjct: 493 ------PPQGQWP----RAGP---NGQPVPV--YGMPPVYGGEFNGPNGQRQQ------- 530
Query: 348 AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----E 403
GA P R+ G+P L+ ++ +QQ+ +LGE LYP + +
Sbjct: 531 ----------RGAYPPNRNQKGGRPQ--RDLAAIISTVPVDQQKRILGEELYPKIVATGK 578
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
E +AA K+TGM+L+++ E+L LLE E + +A+
Sbjct: 579 AQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDAL 618
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E A+ A A+E +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENV 206
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE +VGK K +RE +E+K F N+Y+KNL +D+
Sbjct: 207 NGMLLNDREVFVGKHVSKRDRESKFEEMKANF-------------TNVYVKNLAPEVDNA 253
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
K +E+F FG +TS + D G S+G GFV F E A A+ EMN K I + LYV
Sbjct: 254 KFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGR 313
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ + R
Sbjct: 314 AQKKRERLDELKRLYESTR 332
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V L+ S + L +IF G ++S V RD KS + +VNF D ++A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D R + +Q+ + G N++IKNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKALH 163
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 164 DTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 210 KEERRAR---LQAQFSQMRPVAMGPSV 233
K +R ++ ++A F+ + + P V
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEV 250
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/470 (37%), Positives = 252/470 (53%), Gaps = 55/470 (11%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L ND+++ V F++K ER + KF N+++K+LD+ T+E +K F ++G+I S +M
Sbjct: 273 LFNDRKLHVATFIKKSER-SANNDDKFTNLYMKHLDDDITEELVKLKFSQFGSIVSVKIM 331
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+ DG S FGFV+F+N + A KA +NG + YV +AQKK ER+Q L+ E+
Sbjct: 332 KRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARAQKKEERKQYLQRLHEEK 391
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
E + + N+YIKN+ D +DD+ L+ F EFG ITS KVMRD GIS+G GFV +ST
Sbjct: 392 RNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGNITSAKVMRDDKGISRGFGFVCYST 451
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
PEEA A+ M G M KPLYVA+ QRKEER+A+LQ F+Q+ + V P M
Sbjct: 452 PEEAKSAVNNMRGVMFFGKPLYVAIFQRKEERKAKLQQHFAQLARM-----VGPANSMI- 505
Query: 242 PGPSGLGQQFLYGQAPPAII---PPQAGF-----GYQQQLVPGMRPAGAPMPNFFVPVVS 293
P+G Q +Y P I PP+ GF G + P M P + PV+
Sbjct: 506 --PTGYPQ--VYFAHPSTHIPQGPPRHGFVYPPMGLSHEWRPSMFPPAPNLQQIHSPVMP 561
Query: 294 QGQQGQRPG-GRRGAG--PVQQTQQPLPIMPHQMP-------PRGHAYRYPLGRNMQDFP 343
+ R GR G P+ + M H P PR + +P + F
Sbjct: 562 NSPRHYRSNRGRMGGNMMPLPHAVHTMNYMTHPQPAKEFMSLPR-QRFNHP-----KYFS 615
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQRTLLGESLY 399
D+ A S+ ++ Q P++ + S LA+A P +Q+ LLG LY
Sbjct: 616 NDVMANSL----------------AIHQSDPVSTMNDSFSNYLASAPPAEQKNLLGNRLY 659
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
PLVE+ + + A+K+TGMLLE+D +EV+ LL S E L KV E +++L++
Sbjct: 660 PLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVKVDECVQLLQAT 709
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 13/207 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A ++ N+FVKNL S + L+++F ++G + S V ++ DG S+ +GFV F +
Sbjct: 199 RDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFTS 258
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A +A+ LNG F+DR+ +V KKSER DKF NLY+K+
Sbjct: 259 QESADEAIGNLNGSLFNDRKLHVATFIKKSERS-----------ANNDDKFT--NLYMKH 305
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L D I +E +K FS+FG+I S K+M+ P G S G GFV+F PE A +A + MNG ++
Sbjct: 306 LDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLG 365
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+KEER+ LQ + R
Sbjct: 366 SKALYVARAQKKEERKQYLQRLHEEKR 392
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 17/195 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
++V +L E +E L + F + GT+TS V RD +S +G+VN+ + DA A++ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+ V + + + + G N+++KNL S+D+ L+
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVG----------------NIFVKNLSSSVDNASLQ 226
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELFS+FG + SCKV ++ G S+G GFV F++ E A A+ +NG + + L+VA +
Sbjct: 227 ELFSKFGDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIK 286
Query: 210 KEERRARLQAQFSQM 224
K ER A +F+ +
Sbjct: 287 KSERSANNDDKFTNL 301
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 261/472 (55%), Gaps = 40/472 (8%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVG F + ER E +F NVF+KNL D L ++FGE+G++ S
Sbjct: 147 MLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSV 206
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFV+FE + A K VE L+ K+F+ ++ +VG+AQKK+ER+ ELK +F
Sbjct: 207 ALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKF 266
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---GISKGSG 175
E+ E ++QG+NLY+KNL DSI D+ L+E F+ +G ITS KVM D SKG G
Sbjct: 267 EKLKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFG 326
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-----MRPVAMG 230
FV F++ EEA++A+ EMNG++I SKPLYVA+AQRK+ER+A LQ Q+ Q MR A
Sbjct: 327 FVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHLQQQYMQRVTTGMRLQAFP 386
Query: 231 PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLV----PGMRPAGAPMPN 286
+ P +Y P P + Q P Q + Q + P +R
Sbjct: 387 TNQPQYGNLYMPPP--IQQHPFRMSIRPTPRWSQVKYDQLQSQINSEHPALRLRRESSRT 444
Query: 287 FFV---PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP 343
FF+ S+ + GG R V+ I P P + R Q
Sbjct: 445 FFIFSFVTSSECRMIFNSGGPRAQNGVRG------IAPITRFPANNYTARAGSRPNQSII 498
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQP------MPITALSTALANASPEQQRTLLGES 397
+ G + LP P + A IP A+ QP P+ A T LA A P++Q+ LLGE
Sbjct: 499 YKPGVRNPLPTPAE--AQIPAEQAA--QPKAPDTEQPLNA--TILAAAPPQEQKQLLGER 552
Query: 398 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES---PEALKAKVAEAMEVL 446
LYP + QL + K+TGMLLE++ +E+L +L++ P L+ KV EA+ VL
Sbjct: 553 LYPSIRQLYPELCGKITGMLLEIENSELLAMLDTKSNPGLLQEKVQEAVTVL 604
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 10/177 (5%)
Query: 49 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108
F +G I S V + G+SK +GFV+FE + A KA+E L+G +D++ +VG+ + +
Sbjct: 104 FSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRG 163
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
ER +E + +Q N++IKNL DD KL E+F E G++ S + D +
Sbjct: 164 ERVREYGDRAKQFT----------NVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDEN 213
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
G S+ GFV+F T E A + + +++ K K ++V AQ+K ER+A L+ +F +++
Sbjct: 214 GKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLK 270
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 247/436 (56%), Gaps = 35/436 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 129 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 188
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 189 KVMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKF 248
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 249 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 307
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A +VP P
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY--MQRMASVRAVP--NP 363
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV----PVVSQ 294
+ P Y APP+ GY +P + A P + P
Sbjct: 364 VINP----------YQPAPPS--------GYFMAAIPQTQNRAAYYPPSQIAQLRPSPRW 405
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDMGAGSMLP 353
QG RP + + P P P R ++ P + AG P
Sbjct: 406 TAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRXXXXXAVRTVPQYKYAAGVRNP 465
Query: 354 ---VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
+ + + V P+TA + LA+A P++Q+ +LGE L+PL++ + A
Sbjct: 466 QQHLNAQPQVTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLA 523
Query: 411 AKVTGMLLEMDQTEVL 426
K+TGMLLE+D +E+L
Sbjct: 524 GKITGMLLEIDNSELL 539
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 10/158 (6%)
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 127
SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + ++
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 159
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 187
N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A
Sbjct: 160 -----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQX 214
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
MNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 215 XXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +I KP+ + +QR
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/521 (37%), Positives = 281/521 (53%), Gaps = 85/521 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I D+ V+VG F+ K ER++ A K KFNN+++KN T +E LK++F E+G I SA V
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACV 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV F + D A AV+ ++GK+ + R Y +AQ+K ER++ELK + E+
Sbjct: 224 MKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEK 283
Query: 121 AMKETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E + +NLY+KNL D+IDD++L+E FS G+ITS KVM+D + SKG GFV F
Sbjct: 284 QRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCF 343
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSV 233
+ PE+A+RA+ +MNG +I SKPLYVA+AQRKE+RRA+L Q + +Q R PVA M P+V
Sbjct: 344 ANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMIPAV 403
Query: 234 PPR---MPMYPPG---------PSG--LGQQFLYGQAP--PAII------PPQAGF---- 267
P +PP PSG L Q + +A PA I PP AG+
Sbjct: 404 PGHAAPHSFFPPAFQQTQRFYHPSGAVLSSQPRWNRAAGIPAQIGGLPNRPPVAGYYPSA 463
Query: 268 ------------GYQQQLVPG----MRPAG-APMPNFFVPVV-----SQGQQGQRPGGRR 305
+ Q PG M P G + +P+ + + QQ Q+ GR+
Sbjct: 464 PNPAAITANQMASFAQFRTPGVNRPMVPNGMSSIPSTHLQTAAVFNQTANQQRQQASGRQ 523
Query: 306 G----------AGPVQQTQQPLPIMPHQMPPRGH-AYRYPLGRNMQDFPFDMGAGSMLPV 354
G AG + Q+P PP + A R + + G ++
Sbjct: 524 GVVVPQVLGATAGGL--NQRPTAASVVAGPPSVNPAMRQQVASQVPRAVMHSGMSNITST 581
Query: 355 PVDMGAGIPRRDASVGQP--MPITALST--------------ALANASPEQQRTLLGESL 398
++ R+ S QP +P ++ST ALA S E Q+ LGE L
Sbjct: 582 ATNVRFHQTARNVS-AQPTLVPAGSMSTLLQPLGDQGQLTISALAQLSEEDQKRTLGEHL 640
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
YP ++ + + A K+TGMLL +D EV++LLES E L+AKV
Sbjct: 641 YPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKV 681
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++L F +G I S ++ D +G+SK +GFV+FE + A +A+E +
Sbjct: 102 NIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N DR YVGK K+ER+ + + K + NLYIKN D+EKLK
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQAR------------KVKFNNLYIKNFPPETDNEKLK 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+F+EFG I S VM+D G SKG GFV F P+ A A+ M+GK I + LY A AQR
Sbjct: 210 EMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQR 269
Query: 210 KEERRARLQAQFSQMR 225
KEER+ L+ + + R
Sbjct: 270 KEERQEELKQRLEKQR 285
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 17/189 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L +D L+ F E G + SA V RD S +G+VNFE+ A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R + +Q+ + KG N++IKNL SI+ ++
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKG----------------NIFIKNLDKSIEQKE 116
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCK++ D +G SKG GFV F E A RA+ ++N +I + +YV
Sbjct: 117 LYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKF 176
Query: 208 QRKEERRAR 216
K ER+++
Sbjct: 177 IPKTERKSQ 185
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 130 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHA 67
Query: 186 SRALAEMNGKMIVSKPLYVAVAQR 209
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYESLMGRPIRIMWSQR 91
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 199/549 (36%), Positives = 283/549 (51%), Gaps = 113/549 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN+ T++D +++F +YG +TS+
Sbjct: 211 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSS 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 271 SLARDQEGKSRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E +K+QG+NLYIKNL D +DD+KL+++FSEFG ITS KVMRD
Sbjct: 331 EAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKVMRDTPVENEDEKPAE 390
Query: 169 -------------------------------------GISKGSGFVAFSTPEEASRALAE 191
G SKG GFV FS P++A++A+AE
Sbjct: 391 EKKEEQEDKDKENKPEETKEGEEGAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAE 450
Query: 192 MNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 251
MN +M+ +KPLYVA+AQRK+ R+++L+A + M + +G+ QQ+
Sbjct: 451 MNQRMVSNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAA---------AAGMPQQY 501
Query: 252 LYGQAPPAIIPPQAGFGYQQQLVP-GMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRG 306
+ PP P G Q +P G R P P +P V G+ GQ PG G RG
Sbjct: 502 M---QPPVYFAP----GQQPGFIPQGGRGMPFPQPGMGMPGVQGGRPGQFPGYPQQGGRG 554
Query: 307 AGPVQQTQQPLPIMPHQMPP-------------------------RGHAYRY-------- 333
P QQ + MP Q PP RG
Sbjct: 555 GVP-QQIPPNMYGMPGQFPPQYGQPGTPQFMAAMQQAQQAALSGGRGAPQGGRGGPQGLP 613
Query: 334 ---PLGRNMQDFPFD---MGAGSMLPVPVDMGAGIPRRDASVGQ--PMPITALSTALANA 385
P+G M FP + GAG P G G P+ A G P + L L A
Sbjct: 614 GAPPMGGAMPGFPPNNRQQGAGRGGPNAGRNGNG-PQAQAGRGAEGANPASVLQQQLQAA 672
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
P QQ+ +LGE ++P ++ + + A K+TGMLLEMD +E+++L+E +LKAKV EA+ V
Sbjct: 673 QPAQQKQILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDDSSLKAKVDEALAV 732
Query: 446 LRSVAQQQA 454
+ Q
Sbjct: 733 YDEYVKAQG 741
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 137 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 196
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 197 TDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 243
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ ++ ++LF ++G +TS + RD G S+G GFV F+T E A++A+ E+NG
Sbjct: 244 YVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELNG 303
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 304 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L ++ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 61 SLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 121 LNYTIIKGRPCRIMWSQR 138
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 190/491 (38%), Positives = 265/491 (53%), Gaps = 53/491 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+V+VG F + R E +F NV++KN + E L+K+F ++G ITSA
Sbjct: 169 MLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSA 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKG 116
VM D DGKSK FGFV FEN +DA KAV ++ + +R+ YV +AQKK+ER ELK
Sbjct: 229 AVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKR 288
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++EQ E + ++QG+NLY+KNL D+++D+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 289 RYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGF 348
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
V F P+EA++A+ EMNGKM+ +KPLYVA+AQRKE+R+A+L +Q+ Q R ++
Sbjct: 349 VCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGS 407
Query: 237 MP--MYPPGPSG------LGQQFLYGQAPPAIIP---------------PQAGFGYQQQL 273
MP +Y PG G L Q + P A IP AGFG Q
Sbjct: 408 MPGTVYTPGTGGFFVSSTLQNQRAF--MPTATIPGAQMRGTTPRWNTIGAAAGFGVQSPY 465
Query: 274 VPGMRPAGAPMPNFFVPVVS---------QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQM 324
+ G P S QGQ G G GP Q M
Sbjct: 466 MVQSGAYGQGGRGGTRPTASSAAVAMRAQQGQYGPAQAGVTRGGPQAQRMAAGGAMVQNQ 525
Query: 325 PPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIP-----RRDASVGQPM-PITAL 378
R GR Q P G M+ G P ++++ V Q P+TA
Sbjct: 526 GTRSQQMG---GRQAQ--PGKPSQGQMMYSSYSAITGRPGQVQSQQNSIVIQGQEPLTA- 579
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERD-AAAKVTGMLLEMDQTEVLHLLESPEALKA 437
LA A P++Q+ +LGE +YPL+E++ + K+TGM+LEMD +E+L +LE+ E L++
Sbjct: 580 -HMLAQALPQEQKQMLGERIYPLIERIYQGPDVGKITGMMLEMDNSELLMMLENEELLQS 638
Query: 438 KVAEAMEVLRS 448
KV+EA VL S
Sbjct: 639 KVSEAASVLAS 649
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 12/198 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A KA+E +
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK Q ++ R +E M ET +F N+YIKN D +D E L+
Sbjct: 167 NGMLLEGKKVYVGKFQPRTARLRE--------MGETARRF--TNVYIKNFADELDKEALE 216
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+LFS+FG ITS VM D G SKG GFVAF PE+A +A+ EM+ + + LYV A
Sbjct: 217 KLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRA 276
Query: 208 QRKEERRARLQAQFSQMR 225
Q+K ER A L+ ++ Q +
Sbjct: 277 QKKNERSAELKRRYEQQK 294
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ +
Sbjct: 79 MNFDMMYGKPIRIMWSQRDPSMRRSGAG----------------NIFIKNLDKSIDNKAI 122
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SKG GFV F T E A +A+ ++NG ++ K +YV Q
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQ 182
Query: 209 RKEERRARLQ 218
R ARL+
Sbjct: 183 ---PRTARLR 189
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 171/448 (38%), Positives = 252/448 (56%), Gaps = 51/448 (11%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
ML+N KQVFVG F++K ER + ++ + F N++VKNLD S +++L ++F ++G I +AV
Sbjct: 165 MLLNGKQVFVGPFVKKTERLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAV 224
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VMR +G SK FGF+NF + A A++ +N K F +++ +VG+AQKK+ER +LK F+
Sbjct: 225 VMRGENGASKEFGFINFADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQ 284
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ +E V+K++GLNLY+KNL DS+DDE+L++ FS+FG ITS KVM D + S+G GFV F
Sbjct: 285 KLKQEKVNKYKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCF 343
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
TPE A++AL EM+G MI SKPLYV AQ KE RR++L+AQ++ + M +P MP
Sbjct: 344 KTPEAANKALTEMSGHMIGSKPLYVNFAQPKELRRSQLEAQYNARKQPQM---IPQMMPQ 400
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
+ IP Q F P G+ + + PV Q Q
Sbjct: 401 F-------------------FIPAQGAFP----------PPGSQIKPRWQPVAGGRQSNQ 431
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG 359
GG G Q+ + +A R N ++ P + +
Sbjct: 432 NRGGMSRGGSSQRGAR-----GGNANTAKNAGRIKYNNNARNQPREQPQQT--------- 477
Query: 360 AGIPRRDASVGQPMPITALSTA-LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
P + P L+ LA S + Q+ LLGE L+PLV E A K+TGMLL
Sbjct: 478 --TPNTQEAQTTQAPSDQLTAEYLAKLSEQDQKQLLGERLFPLVHLREPKNAPKITGMLL 535
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVL 446
+M+ +++L L+ES +AL K+ EA++VL
Sbjct: 536 DMEVSDILTLIESTDALNQKIKEAVKVL 563
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 122/216 (56%), Gaps = 19/216 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM---RDGDG-----KSK 69
+R+ K+ N+F+KNLD+S ++ L F +G I S V + GD +S
Sbjct: 83 QRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESA 142
Query: 70 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 129
+GFV+FE + A KA+ +NG + ++ +VG KK+ER + L + D F
Sbjct: 143 GYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTERLKILSNE---------DSF 193
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189
N+Y+KNL S+D+++L E+FS+FG I + VMR +G SK GF+ F+ A A+
Sbjct: 194 --TNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFADHASALIAI 251
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
EMN K +K L+V AQ+K ERRA+L+ F +++
Sbjct: 252 DEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLK 287
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 25/192 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L E ++ L +F E G I S + RD KS + +VNF+N DA +A++ L
Sbjct: 8 LYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALDTL 67
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + +Q+ + G N++IKNL SID++ L
Sbjct: 68 NYASVKGIPIRIMWSQRDPSIRKSGIG----------------NIFIKNLDKSIDNKALY 111
Query: 150 ELFSEFGTITSCKVMR-----DPSGI---SKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ FS FG I SCKV + D G S G GFV F T E A +A+A++NG ++ K
Sbjct: 112 DTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQ 171
Query: 202 LYVAVAQRKEER 213
++V +K ER
Sbjct: 172 VFVGPFVKKTER 183
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
+ +LY+ +L + I + L +LF E G I S ++ RD + S G +V F P++A R
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N + P+ + +QR
Sbjct: 63 ALDTLNYASVKGIPIRIMWSQR 84
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 193/547 (35%), Positives = 278/547 (50%), Gaps = 95/547 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN++ +D++ + +F +YG +TS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSS 271
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A++AVE LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 272 SLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSY 331
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A +E +K+QG+NLYIKNL D +DDEKL+ +FSEFG ITS KVMRD
Sbjct: 332 EAARQEKANKYQGVNLYIKNLSDDVDDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAE 391
Query: 169 -------------------------------------GISKGSGFVAFSTPEEASRALAE 191
G SKG GFV FS PE+A++A+A+
Sbjct: 392 EETPAPEAEVKKEDSEADADSQEAADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVAD 451
Query: 192 MNGKMIVSKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRM---PMYPPG 243
MN +MI +KPLYVA+AQRK+ R+ +L+ +M+ A +P + P+Y PG
Sbjct: 452 MNQRMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMRMQSAAAQAGMPNQFMQQPVYFPG 511
Query: 244 ---------------PSGLGQQFLYGQAP---PAIIPPQAGFGYQQQLVPGMR------- 278
P +G + G P PA P Q G G QQL P M
Sbjct: 512 QQPGFLPQGGRGMPFPPNMGMPNIQGGRPGQYPAGFPQQGGRGIPQQLPPNMYGVPGQFP 571
Query: 279 ----PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ-MPPRGHAYRY 333
PA A P F + Q QQ G G Q + P+ MP M P Y
Sbjct: 572 PGGFPAQANNPQFMA-AMQQVQQAS-----MGGGRGQGGRGPMQGMPAGPMGPGAPGYPP 625
Query: 334 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANAS-PEQQRT 392
+ Q G P G G P + P ++A+ L NA+ QQ+
Sbjct: 626 NRQQPGQAGGRGGRNGQQGNFPPQGGRGAPGAGENT-PPQGLSAIQLQLNNATDARQQKQ 684
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
++GE ++P + + + A K+TGMLLEM+ +E++ L+E A+K KV EA+ V +
Sbjct: 685 IIGELIFPKIAAQQPELAGKITGMLLEMENSELITLIEDDNAMKLKVDEALGVYEEYVKN 744
Query: 453 QANNPAD 459
Q D
Sbjct: 745 QGTEEDD 751
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 138 QRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 198 TDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ ++LF+++G +TS + RD G S+G GFV F+T E AS+A+ E+NG
Sbjct: 245 YVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNG 304
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 305 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 335
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L + + L ELFS G + S +V RD + S G +V ++T + +AL E
Sbjct: 62 SLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 122 LNYTVINGRPCRIMWSQR 139
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 199/554 (35%), Positives = 274/554 (49%), Gaps = 143/554 (25%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K+ER++ +K F NV+VKN+D +D++ + +F +G ITSA
Sbjct: 202 MLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSA 261
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RDGD G S+ FGFVNF + + AA AV+AL+ + + +VG+AQKK ERE+EL+ Q
Sbjct: 262 SLARDGDSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQALFVGRAQKKHEREEELRKQ 321
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP---------- 167
+E A E K+QG+NLY+KNL D IDDE+L++ FS +GTITS KVMRD
Sbjct: 322 YEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDSLDSPKEKDGE 381
Query: 168 ---------------SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
G SKG GFV FS P+EAS+A+AEMN +M+ KPLYVA+AQRK+
Sbjct: 382 ESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDV 441
Query: 213 RRARLQA---QFSQMR------------------PVAMGPSVP----------------- 234
R+++L+A Q +Q+R P+ P P
Sbjct: 442 RKSQLEASIQQRNQIRMQQAAAAAGMPPQPYLSAPLYYQPGAPGVQPPFLAGPGGPGVPP 501
Query: 235 PRMPMYPPGPSGL---GQQFLYGQAPPAIIPPQAG-FGYQQQLVP--------------- 275
R+P +PP +G+ G G PP+ P G Q Q P
Sbjct: 502 NRLP-FPPQQAGMMISGAGRASGNWPPSANPSGGNRNGTQGQPAPIYGMTGQGGPGGQFG 560
Query: 276 -----------GMRPA--GAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH 322
M PA GAP Q G PG +G V Q
Sbjct: 561 YAQAFNQAQLAAMNPAARGAP------------QLGLNPGRGLSSGGVNQ---------- 598
Query: 323 QMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTAL 382
QM GH R PLGR V G G AS G P + L+
Sbjct: 599 QM---GHQQRGPLGRG---------------VAPSQGRGYHSDQASQGAPPQLANLN--- 637
Query: 383 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 442
N P+QQ+ +LGE+LYP + + A K+TGMLLEMD E+L+L++ AL+ KV EA
Sbjct: 638 -NLPPQQQKQVLGEALYPRIHAINPQLAGKITGMLLEMDNNELLNLIKDDSALRNKVDEA 696
Query: 443 MEVLRSVAQQQANN 456
+ V + +A +
Sbjct: 697 LSVYDEYVKSKATD 710
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 128 QRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 187
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ YVG K ER+ E+K F N+
Sbjct: 188 TAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKANF-------------TNV 234
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + D++ + LF FG ITS + RD SG S+G GFV FS+ E A+ A+ ++
Sbjct: 235 YVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALH 294
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + L+V AQ+K ER L+ Q+ R
Sbjct: 295 ETELKGQALFVGRAQKKHEREEELRKQYEAAR 326
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 52 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEE 111
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T N++IKNL +ID++ L
Sbjct: 112 LNYTLIKGRPCRIMWSQR------------DPALRKTGHG----NVFIKNLDIAIDNKAL 155
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E A+ A+ +NG ++ K +YV
Sbjct: 156 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHI 215
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K+ER+++ ++A F+ + + P V
Sbjct: 216 PKKERQSKFDEMKANFTNVYVKNIDPEV 243
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 181/501 (36%), Positives = 264/501 (52%), Gaps = 87/501 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 173 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 232
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 233 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 292
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM---------RDPSG 169
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS K + DP G
Sbjct: 293 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVG 352
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMR 225
S ++ EEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR
Sbjct: 353 TCSPSAALS-GLKEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 411
Query: 226 PVA---MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ---------- 272
++ +G P P P Q YG P + P Q + Q
Sbjct: 412 TLSNPLLGSFQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQPPRPSCASMV 469
Query: 273 -----------LVPGMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPL 317
+ +R A +P VP V + G Q PGG P +
Sbjct: 470 RPPVMPRRPPAHISSVRQASTQVPR-MVPHTQRVANIGTQTTGPGGVGCCTPGR------ 522
Query: 318 PIMPHQMPPRGHA-YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPIT 376
P++P++ H+ YR + IP ++ P+T
Sbjct: 523 PLLPYKCSSAAHSTYRVQ----------------------EPAVHIPGQE-------PLT 553
Query: 377 ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 436
A + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L
Sbjct: 554 A--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLH 611
Query: 437 AKVAEAMEVLRSVAQQQANNP 457
AK+ EA+ VL+ A Q P
Sbjct: 612 AKIDEAVAVLQ--AHQAVEQP 630
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 107 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQ 165
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 166 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 215
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 216 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 275
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 276 GRAQKRVERQNELKRRFEQMK 296
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 32/205 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG------DGKSKCFGFVNFENADD-- 81
+++V +L T+ L + F G I S V RD +S + ++NF+ D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQPADGE 71
Query: 82 --AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLY 135
A +A AL+ F+ LKGQ + M D + G+ N++
Sbjct: 72 EQAQRAERALDTMNFE-----------------MLKGQPIRIMWSQRDPGLRKSGVGNIF 114
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL DSID++ L + FS FG I SCKV+ D G S+G GFV F T E A +A+ MNG
Sbjct: 115 IKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGM 173
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQ 220
++ + ++V + + ER A L A+
Sbjct: 174 LLNDRKVFVGHFKSRREREAELGAR 198
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 183/482 (37%), Positives = 263/482 (54%), Gaps = 75/482 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F N++VKN+D + ++E +K+F +G ITS
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSI 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVNFE+ + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 263 YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL D+ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 323 EAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
F+TPEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q Q R +M
Sbjct: 383 FTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQI-QAR---------NQMR 432
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFF 288
M GL QF+ YGQ PP G PG MR G P P
Sbjct: 433 MQNAAAGGLPGQFIPPMFYGQQ--GFFPPN---GRGNAPYPGPNPQMMMRGRGQPFP--- 484
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
+Q RPG QP+P+ + +PP+ F D
Sbjct: 485 -------EQWPRPG---------PNGQPVPV--YGIPPQ--------------FQQDFNG 512
Query: 349 GSMLPVPVDM----GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV-- 402
+M P G P R+ + + L+ +++ +QQ+ +LGE LYP +
Sbjct: 513 QNMRPQQQQQQQPRGGYYPNRNQTSKRD-----LAAIISSVPQDQQKRILGEELYPKIVA 567
Query: 403 --EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
+ E +AA K+TGM+L ++ E+L LL+ E +A+ + +A A++
Sbjct: 568 TGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEE 627
Query: 461 LA 462
A
Sbjct: 628 QA 629
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 129 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A+E +NG +DRE +VGK K +RE +E+K F N+
Sbjct: 189 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANF-------------TNI 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + +E ++LFS FG ITS + +D G SKG GFV F E A +A+ E+N
Sbjct: 236 YVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + +YV AQ+K ER L+ Q+ +R
Sbjct: 296 KEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 78
E+ + +++V L+ S + L +IF G ++S V RD KS + +VN+
Sbjct: 43 ESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHK 102
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+D KA+E LN + R + +Q+ + G N++IKN
Sbjct: 103 YEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKN 146
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG ++
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 199 SKPLYVAVAQRKEERRAR---LQAQFSQM 224
+ ++V K++R ++ ++A F+ +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNI 235
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/288 (50%), Positives = 190/288 (65%), Gaps = 13/288 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M +NDKQV+VG F R+ +R T + KFNNV+VKNL E+ +DE L++ F E+G +TS V+
Sbjct: 183 MELNDKQVYVGPFQRRADRSTQG-EAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVI 241
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV FE+ + AA AVE L+G D++ W V +AQKK+ERE ELK +FE
Sbjct: 242 MKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEA 301
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+E ++K G NLYIKNL + DDEKL+ELF+EFGTITSC+VMRD SG S+GS FVAFS
Sbjct: 302 ERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFS 361
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA-RLQAQFSQMRPVA----MGPSVPP 235
+P+EA+RA+ EMNGKM+ +KPLYVA+AQRKEE A R A + + A + P
Sbjct: 362 SPDEATRAVTEMNGKMVGAKPLYVALAQRKEEPHAGRWHAGYGPVHATAGCSGRADVLRP 421
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
P Y + G +F P ++ GY + VP A P
Sbjct: 422 TAPGYDAAAAATGLRF------PTSHAWRSATGY-ARYVPRYADAATP 462
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 17/224 (7%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+IN K + V + +R+ ++ N+F+KNLD++ ++ L F ++GTITSA V
Sbjct: 97 VINGKPIRVLY----SQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAKVA 152
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
D G SK +GFV FE A+ A A++ +NG + +D++ YVG Q++++R + + +F
Sbjct: 153 MDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQGEAKFN-- 210
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
N+Y+KNL +++ DEKL+E F+E G +TSC +M+D G SKG GFV F +
Sbjct: 211 -----------NVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFES 259
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
PE A+ A+ ++G K V AQ+K ER A L+A+F R
Sbjct: 260 PEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAER 303
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 19/198 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L+ S T+ L + F G + S V RD +S + +VNF+++ DAA A++
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDE 146
LN + + + V L Q + A++ + G+ N++IKNL +ID++
Sbjct: 92 VLNFQVINGKPIRV------------LYSQRDPAVRRS-----GVGNIFIKNLDKAIDNK 134
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + F++FGTITS KV D +G SKG GFV F T E A A+ +NG + K +YV
Sbjct: 135 ALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGP 194
Query: 207 AQRKEERRARLQAQFSQM 224
QR+ +R + +A+F+ +
Sbjct: 195 FQRRADRSTQGEAKFNNV 212
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 175/442 (39%), Positives = 247/442 (55%), Gaps = 67/442 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F N++VKN+D + T+E+ +K+F YG ITS
Sbjct: 200 MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSI 259
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVNFE D A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 260 YLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 319
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DSID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 320 EAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVC 379
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
F+TPEEA++A+ EMN +M+ +KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 380 FTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA----- 434
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFF 288
GL QF+ YGQ PP G PG MR G P P
Sbjct: 435 ----AAGGLPGQFMPPMFYGQQ--GFFPPN---GRGNAPFPGPNPQMMMRGRGQPFP--- 482
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPF-DMG 347
+Q RPG QP+P+ + +PP+ QDF ++
Sbjct: 483 -------EQWPRPG---------PNGQPVPV--YGIPPQFQ----------QDFNGQNVR 514
Query: 348 AGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----E 403
G P R+ + + L+ +A+ +QQ+ +LGE LYP + +
Sbjct: 515 PPQQQQQQQPRGGYYPNRNQTNKRD-----LAAIIASVPQDQQKRILGEELYPRIVATGK 569
Query: 404 QLERDAAAKVTGMLLEMDQTEV 425
E +AA K+TGM+L ++ E+
Sbjct: 570 AQEPEAAGKITGMMLGLENQEI 591
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 126 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQSKCFGFVHYE 185
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A+E +NG +DRE +VGK K +RE +E+K F N+
Sbjct: 186 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANF-------------TNI 232
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + +E+ ++LF+ +G ITS + +D G SKG GFV F + A +A+ E+N
Sbjct: 233 YVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELND 292
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + +YV AQ+K ER L+ Q+ +R
Sbjct: 293 KEINGQKIYVGRAQKKRERMEELKKQYEAIR 323
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA+E
Sbjct: 50 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEE 109
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 110 LNYTPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 153
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 154 HDTFSAFGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI 213
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 214 SKKDRESKFE 223
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 23/302 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG+ + ++ER++ ++ F N++VKNLD T + ++F ++G +TSA
Sbjct: 205 MLLNDKKVYVGYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSA 264
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D +GKSK FGFVNFEN + AAKAV+ L+ F+ ++ +V +AQKK+ERE+EL+ +
Sbjct: 265 VIQTDEEGKSKGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSY 324
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NLYIKNL D +DDEKL+ F FGTITSCKVMRD G SKG GFV
Sbjct: 325 ESAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVC 384
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KMI SKPLYV++AQR+E RR +L++Q +Q + M + +P
Sbjct: 385 FSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGLP 444
Query: 239 -MYPPGP-------------SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM---RPAG 281
Y GP +G G + G P ++PP+ + QQ VPGM P G
Sbjct: 445 GGYINGPMYYPPGPGAYPPQAGRG---MMGYGQPGMLPPRPRYAPNQQ-VPGMPVPSPYG 500
Query: 282 AP 283
P
Sbjct: 501 QP 502
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 26/221 (11%)
Query: 18 ERETVAIKTKFNNVFVKNLDE----------STTDEDLKKIFGEYGTITSAVVMRDGDGK 67
+R+ KT N+F+KNLDE T L F +G + S V D G+
Sbjct: 121 QRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAFGNVLSCKVATDEQGR 180
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKE 124
S+ +G+V++E A+ A A++A+NG +D++ YVG + ER+ +E++ F
Sbjct: 181 SRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMRAHF------ 234
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184
NLY+KNL + ++ ELFS+FG +TS + D G SKG GFV F E+
Sbjct: 235 -------TNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQ 287
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
A++A+ ++ K L+V+ AQ+K ER L+ + +
Sbjct: 288 AAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAK 328
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 30/208 (14%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V LD + T+ L +IF G + S V RD +S + +VN+ N D +A+E L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE--- 146
N R + +Q+ + A+++T QG N++IKNL + ID++
Sbjct: 106 NYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDELIDNKVRT 149
Query: 147 -------KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
L + F+ FG + SCKV D G S+G G+V + T E A A+ +NG ++
Sbjct: 150 AQKTPPHALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLND 209
Query: 200 KPLYVAVAQRKEERRARLQ---AQFSQM 224
K +YV ++ER+++L+ A F+ +
Sbjct: 210 KKVYVGYHISRKERQSKLEEMRAHFTNL 237
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 195/555 (35%), Positives = 277/555 (49%), Gaps = 103/555 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN+ TD+D + +F ++G +TS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSS 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + +DA+KAVE LN K+F + YVG+AQKK ERE+EL+
Sbjct: 272 SLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRS 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--------- 168
+E A +E K+QG+NLYIKNL D +DD+KL++LFSEFG ITS KVMR+
Sbjct: 332 YEAARQEKASKYQGVNLYIKNLDDEVDDDKLRQLFSEFGPITSAKVMRETLAEGADEPEA 391
Query: 169 ----------------------------------GISKGSGFVAFSTPEEASRALAEMNG 194
G SKG GFV F P++A++A+AEMN
Sbjct: 392 KDAADAKENVKEDEEAAKTEGDEGDAKADKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQ 451
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQF---SQMR-----------------PVAMGP-SV 233
+M+ KPLYVA+AQRK+ R+ +L+A +Q+R PV GP S
Sbjct: 452 RMVNGKPLYVALAQRKDVRKNQLEASIQARNQLRMQQAAAAAGMPQQFMQAPVFYGPGSQ 511
Query: 234 PPRMP------MYPPGPSGLG----QQFLYGQAPPAIIPPQAGFGYQQQLVPGMR----- 278
P MP M P P G+G Q GQ P Q G G Q +P M
Sbjct: 512 PGFMPPAGGRGMPFPQP-GMGLPAVQGGRPGQFPAGYAGQQGGRGGLPQQIPPMYGIPGQ 570
Query: 279 --PAGAPMPNF--FVPVVSQGQQGQRPGGR-----RGAGPVQQTQQPLPIMPHQ-----M 324
P G PN F+ + Q QQ GR RG G +P MP
Sbjct: 571 FPPQGQYQPNNPQFIAAMQQLQQSNLTAGRGVPVARGPGIQGGLPGSMPGMPGAANMPGY 630
Query: 325 PPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALAN 384
PP G + G G P RDA+ + + A
Sbjct: 631 PPNARQQGAGAGAGRGAGGRNQGPGFAGAAPQG------GRDAAPAEGASVLQTQLAAVG 684
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
+P QQ+ +LGE ++P ++ + + A K+TGMLLEM+ E++ L+E+ +L+AKV EA+
Sbjct: 685 NNPGQQKQILGEVIFPKIQAIHPELAGKITGMLLEMENAELVALIENEGSLRAKVDEALA 744
Query: 445 VLRSVAQQQANNPAD 459
V + Q D
Sbjct: 745 VYDDYVRAQGGEAGD 759
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 138 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 198 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + D+ + LF +FG +TS + RD +G S+G GFV F++ E+AS+A+ E+N
Sbjct: 245 YVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELN 304
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 305 EKEFHGQNLYVGRAQKKHEREEELRRSYEAAR 336
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA++
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 226 PKKDR----QSKFEEMK 238
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 184/460 (40%), Positives = 248/460 (53%), Gaps = 68/460 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IN ++VFVG F +ER + KF NVF KNL E T + LK++ YGTIT+ +
Sbjct: 161 MMINGQKVFVGPFKSSKERGQ-PTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAI 219
Query: 61 MRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
M D GKSK F F NFE+AD A VE NGK F + Y G+AQKK ERE ELK FE
Sbjct: 220 MLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKHTFE 279
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVA 178
K+QG+NLYIKN+ DSID++KL+E+FS+FGTITS VM+D + SKG GFV
Sbjct: 280 T-------KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVC 332
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+++P+EA+RA+ EMNG+MI +KPLYVA+AQRK+ RRA+L+ Q Q M ++ P
Sbjct: 333 YTSPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKAGMRQTM---AP 389
Query: 239 MYPPGPSGLGQQFLYGQAP--PAIIPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPV 291
Y GP + AP PA++ QQ++P R P G P + +
Sbjct: 390 AYSGGP------VFFTPAPVTPAVV--------YQQMMPRPRNWNGAPVGVPGNQYGMNY 435
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMP--HQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
V G Q RP G+R GP Q+P P Q P
Sbjct: 436 VRGGGQ-PRPNGQRPTGPRPNGQRPDSAQPIATQQP------------------------ 470
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
VD P+ + Q T LS+ LA + +QQ LGE LYPL+ + +
Sbjct: 471 -----AVDQATQQPQAASGASQEAAPT-LSSILALPTRDQQNVALGELLYPLIHNSQPEL 524
Query: 410 AAKVTGMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLL+ + E+ L + + L K+ EA++VL +
Sbjct: 525 AGKITGMLLDSLPVEELFALTQRSDLLNEKIKEAIDVLNA 564
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+ + L F +G I S V+ D + SK FGFV++E
Sbjct: 87 QRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDNNSSKGFGFVHYE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A KA+ +NG + ++ +VG + ER Q + +F N++ K
Sbjct: 147 SQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKFT-------------NVFFK 193
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKM 196
NL + + ++LKEL + +GTIT+ +M D +G SKG F F + + A + NGK+
Sbjct: 194 NLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKV 253
Query: 197 IVSKPLYVAVAQRKEERRARLQAQF 221
KPLY AQ+K ER A L+ F
Sbjct: 254 FHGKPLYAGRAQKKIEREAELKHTF 278
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 104/197 (52%), Gaps = 17/197 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
++++V +L +++ L ++F + G +++ V RD + + S + +VN+ NA DA +A++
Sbjct: 10 SSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALD 69
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + +Q+ + G N++IKNL ID +
Sbjct: 70 TLNNTPIRGKPCRIMWSQRDPSLRKSGVG----------------NVFIKNLDKGIDHKA 113
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D + SKG GFV + + + A +A+A++NG MI + ++V
Sbjct: 114 LYDTFSAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPF 173
Query: 208 QRKEERRARLQAQFSQM 224
+ +ER + +F+ +
Sbjct: 174 KSSKERGQPTEIKFTNV 190
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 194/574 (33%), Positives = 282/574 (49%), Gaps = 153/574 (26%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+ T+E+ +++F ++G +TSA
Sbjct: 212 MLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSA 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF N + AA AV+ LNGK F ++ YVG+AQKK ERE+EL+
Sbjct: 272 SLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRS 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--------- 168
+E A E K+QG+NLY+KNL D IDDEKL+ELF FG+ITS KVMRD
Sbjct: 332 YEAARIEKASKYQGVNLYVKNLDDDIDDEKLRELFQSFGSITSAKVMRDTPAETAEAEEK 391
Query: 169 ----------------------------------------GISKGSGFVAFSTPEEASRA 188
G SKG GFV F+ P+EA++A
Sbjct: 392 KEKDEEKNKENKDTKETKETKKEGEAETEEASAPKAKRSLGKSKGFGFVCFNNPDEATKA 451
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG 248
+++MN +M+ +KPLYVA+AQRK+ R+++L+A + M + +G+
Sbjct: 452 VSDMNQRMVNNKPLYVALAQRKDVRKSQLEASIQARNQIRMQQAA---------AQAGMP 502
Query: 249 QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA------PMPNFFVPVVSQGQQGQRPG 302
QQ++ P PP G QQ PG P G P +P G QG RPG
Sbjct: 503 QQYMQA---PMFFPP----GAQQ---PGFLPQGGRGMQFPPQAGMPIP----GAQGGRPG 548
Query: 303 GRRGAGPVQQTQQPLPIMPHQMPPRGHAY---------RYPLGRN------MQDFPFDMG 347
+ P QQ + P QMPP + +YP N MQ G
Sbjct: 549 QFQAGFPPQQAGRGAPA-GQQMPPNMYGMGPGQFPAGGQYPQQNNPQFLAAMQAAQLTAG 607
Query: 348 AGS------MLPVPVDMG-----------------AGIPRRDASVGQP------------ 372
G M +P +M G+P R A G+P
Sbjct: 608 RGGPNARGPMQGMPPNMAMPMGQQGMPQFQQGARQGGMPGRGAQAGRPGQFAGGFPPQAG 667
Query: 373 ---------------------MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAA 411
+P T L + +P+QQ+ +LGE+L+P ++ L+ + A
Sbjct: 668 RGMPQQIPGMQQIPQMAQEGGVPATMLQAQVQAVAPQQQKQILGEALFPKIQVLQPELAG 727
Query: 412 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
K+TGMLLEM+ E+++L+E +L+AKV EA+ V
Sbjct: 728 KITGMLLEMENQELINLIEDDASLRAKVDEALTV 761
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 138 QRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 198 TDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ +E+ +ELF +FG +TS + RD +G S+G GFV F E A+ A+ E+N
Sbjct: 245 YVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELN 304
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
GK + LYV AQ+K ER L+ + R
Sbjct: 305 GKDFKGQDLYVGRAQKKHEREEELRRSYEAAR 336
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKNGQG----------------NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D SG SKG GFV + T E A++A+ +NG ++ K ++V
Sbjct: 166 HDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHI 225
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 226 PKKDR----QSKFEEMK 238
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 197/574 (34%), Positives = 283/574 (49%), Gaps = 129/574 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K + N+++KNL TD++ +K+F +YG +TS+
Sbjct: 210 MLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSS 269
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGF+NF + AAKAVE LN ++ +E YVG+AQKK ERE+EL+
Sbjct: 270 TIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKS 329
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--------- 168
+E A +E K+ G+NLYIKNL D +DDEKL+ELF+ +G ITS KVMR+ +
Sbjct: 330 YEAARQEKASKYVGVNLYIKNLDDEVDDEKLRELFAPYGPITSAKVMRETASESDEEGKE 389
Query: 169 -----------------------------------------GISKGSGFVAFSTPEEASR 187
G SKG GFV FS P++A++
Sbjct: 390 TKETEEVKEVKEEEEKPKVEGAAEGEADASGEKQAAARPKLGKSKGFGFVCFSNPDDATK 449
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPM---- 239
A+ EMN +M+ KPLYVA+AQ+KE R+++L+A + M + P+ M
Sbjct: 450 AVTEMNQRMVSGKPLYVAIAQKKEVRKSQLEASIQARNTLRMQQAAAVAGLPQTYMQPQV 509
Query: 240 -YPPGP-------SGLGQQFLYGQ--------------APPAIIPPQAGFGYQ-QQL--- 273
YPPG G G F G AP PQ G G QQL
Sbjct: 510 YYPPGQQQAFLPQGGRGMAFPQGGLGIPGVQGGRPGQFAPGGFTGPQGGRGLPPQQLPPN 569
Query: 274 ---VPGMRPAGAPM-PNF--FVPVVSQGQQ------------------GQRPGG---RRG 306
+PG P G P PN ++ + Q QQ G P G +G
Sbjct: 570 VYGLPGQFPPGVPFGPNNAQYLAAMQQVQQTVGRGGAPAGGRGPIPALGSHPAGINGLQG 629
Query: 307 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 366
AGP L P G G P AG + A +P
Sbjct: 630 AGP------GLAGFPPTRQNGGGRGAGRGGAQGFAGP---QAGRGVQGQASGSAAVPE-- 678
Query: 367 ASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 426
+ Q I A TA N + +QQ+ +LGE+++P ++ + + A K+TGMLLEMD E++
Sbjct: 679 --LNQATLIQAQLTA-TNGNVQQQKQILGEAIFPKIQNFQPELAGKITGMLLEMDNQELV 735
Query: 427 HLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
HL+E ALKAKV EA+ V + + Q N PA++
Sbjct: 736 HLIEDESALKAKVDEALGVYQDYVKAQ-NVPAEE 768
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 121/209 (57%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG ++++ YVG K +R+ +FE+ MK N+YIK
Sbjct: 196 TDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS----KFEE-MKANY-----TNIYIK 245
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKM 196
NL + D++ ++LF ++G +TS + RD +G S+G GF+ F+T E A++A+ E+N +
Sbjct: 246 NLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSRE 305
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I + LYV AQ+K ER L+ + R
Sbjct: 306 IHGQELYVGRAQKKHEREEELRKSYEAAR 334
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LDES T+ L ++F + G + S V RD +S + +VN+ + D KA+E
Sbjct: 60 SLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 119
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 120 LNYTLIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDAAIDNKAL 163
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A +A+ +NG ++ K +YV
Sbjct: 164 HDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHI 223
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 224 PKKDR----QSKFEEMK 236
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 264/478 (55%), Gaps = 67/478 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K + N++VKN+D ++++ + +F YG ITS
Sbjct: 212 MLLNDREVYVGKHVSKKDRESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSI 271
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVN+E A +AVEALN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 272 YLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQY 331
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL D ID EKL+E F FGTITS KVM D +G S+G GFV
Sbjct: 332 EAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVC 391
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTPEEA++A+ EMN +M+ KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 392 FSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA----- 446
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR---PAGAPMPNFFVPVVSQG 295
+G QF+ PP +G Q PG R P P P ++ +G
Sbjct: 447 ----AAAGFPGQFM----PPMY------YGQQGFFPPGGRGNAPFPGPNPQM---MMRRG 489
Query: 296 QQGQ-------RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
Q GQ RPGG G QP+P+ + +PP ++P R Q
Sbjct: 490 QPGQPFPEQWPRPGGPNG--------QPVPV--YGIPP-----QFPDQRAQQQQQQQQQR 534
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQ 404
G P G +P +D L+ +++ PEQQ+ +LGE LYP + +
Sbjct: 535 GYY---PGQAGVKVPAKD-----------LAAIISSVPPEQQKRILGEELYPRIVATGKA 580
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
E +AA K+TGM+L ++ E+L LL+ E +A+ + +A A++ A
Sbjct: 581 QEPEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDALTAYEEYKKSEAGVAANEEA 638
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 138 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDLGQSKCFGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A+E +NG +DRE YVGK K +RE +FE+ MK N+Y+K
Sbjct: 198 TAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRE----SKFEE-MKANY-----TNIYVK 247
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ +++ ++LF+ +G ITS + +D G SKG GFV + + A A+ +N K I
Sbjct: 248 NIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEI 307
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER L+ Q+ +R
Sbjct: 308 NGQKIYVGRAQKKRERTEELKKQYEAIR 335
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA++
Sbjct: 62 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN ++R + +Q+ + G N++IKNL +ID++ L
Sbjct: 122 LNYSLIENRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + +YV
Sbjct: 166 HDTFSAFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHV 225
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 226 SKKDRESKFE 235
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 201/568 (35%), Positives = 291/568 (51%), Gaps = 119/568 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+ T+E+ +++F ++G +TSA
Sbjct: 212 MLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSA 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF N + AA AV+ LNGK F ++ YVG+AQKK ERE+EL+
Sbjct: 272 SLARDTESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRS 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E A E K+QG+NLY+KNL D IDDEKL+ELF+ FG ITS KVMRD
Sbjct: 332 YEAARMEKASKYQGVNLYVKNLDDEIDDEKLRELFAPFGAITSAKVMRDTPAETADAEDK 391
Query: 167 -----------------------------PSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
P G SKG GFV F+ P+EA++A+++MN +M+
Sbjct: 392 KEKDEEKNKENKKEGEAETEEASAPKAKRPLGKSKGFGFVCFNNPDEATKAVSDMNQRMV 451
Query: 198 VSKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRM---PMY-PPGP---- 244
+KPLYVA+AQRK+ R+++L+A +M+ A +P + PM+ PPG
Sbjct: 452 SNKPLYVALAQRKDVRKSQLEASIQARNQIRMQQAAAQAGMPQQYMQAPMFFPPGAQQPG 511
Query: 245 ----SGLGQQF--------------LYGQAPPAIIPPQAGFGY--QQQLVPGMR------ 278
G G QF GQ P QAG G QQ+ P M
Sbjct: 512 FLPQGGRGMQFPPQAGMPIPGAQAGRPGQFQAGFPPQQAGRGAPAGQQMPPNMYGMGPGQ 571
Query: 279 -PAGAPMPNFFVP------------VVSQGQQGQRPGGRRGAGPVQ---------QTQQP 316
PAG P P +S G+ GG GP+Q QQ
Sbjct: 572 FPAGGQYPQQNNPQFLAAMQAAQAAQLSAGR-----GGPNARGPMQGMPPNMAMPMGQQG 626
Query: 317 LPIMPHQ-----MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 371
+P MP RG P G+ FP G G +P + +P+ G
Sbjct: 627 MPQFQQGARQGGMPGRGAQAGRP-GQFAGGFPPQAGRG--MPQQIPGMPQMPQMPQEGG- 682
Query: 372 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
+P T L + + P+QQ+ +LGE+L+P ++ L+ + A K+TGMLLEM+ E+++L+E
Sbjct: 683 -VPTTLLQAQVQSVPPQQQKQILGEALFPKIQVLQPELAGKITGMLLEMENQELINLIED 741
Query: 432 PEALKAKVAEAMEVLRSVAQQQANNPAD 459
+L+AKV EA+ V + + D
Sbjct: 742 DASLRAKVDEALTVYDEYVKNRGEGEGD 769
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 138 QRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 198 TDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ +E+ +ELF +FG +TS + RD SG S+G GFV F E A+ A+ E+N
Sbjct: 245 YVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELN 304
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
GK + LYV AQ+K ER L+ + R
Sbjct: 305 GKDFKGQDLYVGRAQKKHEREEELRRSYEAAR 336
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQRDPALRKNGQG----------------NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D SG SKG GFV + T E A++A+ +NG ++ K ++V
Sbjct: 166 HDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHI 225
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 226 PKKDR----QSKFEEMK 238
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 178/242 (73%), Gaps = 3/242 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ +K +F N+++KN+D TDE+ + +F E G +TS+
Sbjct: 197 MLLNDKKVYVGHHISRKERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSS 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD +G+S+ FGFVN+E ++A KAV+ LN K F R+ +V +AQKK+ERE+EL+
Sbjct: 257 VIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAH 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QGLNLY+KNL D +DDEKL+ F FGTITS KVMRD G+SKG GFV
Sbjct: 317 EQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+PEEAS+A+AEMN KMI SKPLYV+ AQR+E RR +L++Q +Q R M + MP
Sbjct: 377 YSSPEEASKAVAEMNNKMIGSKPLYVSHAQRREVRRQQLESQIAQ-RNQIMHQAAAGGMP 435
Query: 239 MY 240
Y
Sbjct: 436 GY 437
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 114/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G SK +GFV++E
Sbjct: 123 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ YVG + ER+ E+K QF NL
Sbjct: 183 TAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKAQF-------------TNL 229
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + DE+ + LF E G +TS + RD G S+G GFV + T EEA +A+ +N
Sbjct: 230 YIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLND 289
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + L+V+ AQ+K ER L+ Q R
Sbjct: 290 KDFHGRKLFVSRAQKKAEREEELRKAHEQAR 320
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 107 LNYSLIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHI 210
Query: 209 RKEERRARL---QAQFSQMRPVAMGPSV 233
++ER++++ +AQF+ + + P V
Sbjct: 211 SRKERQSKIDEMKAQFTNLYIKNIDPEV 238
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 264/476 (55%), Gaps = 69/476 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +Q+RE A F N++VKNL + ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +G+S+ FGFVNFE ++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +F
Sbjct: 221 KVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E +++QG+NLY+KNL DSI+DE+LKE+FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPR 236
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ + RP + P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRR-RPSHPVLSSFQQPT 398
Query: 237 MPMYPPGPSGLGQQFLYG-----------------QAPPAIIPPQAG----FGYQQQLVP 275
+ P P Q Y PP+ PP A Q P
Sbjct: 399 SYLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPSTCPPAASVVQPLSTTQH--P 456
Query: 276 GMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY 331
+ +GA + VP VV+ G Q PGG + P Q ++PH RG +
Sbjct: 457 CIHLSGASQVSSQVPHTQRVVNIGTQTTGPGGEGSSIPGQL------LVPH----RGTS- 505
Query: 332 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
V G+ V P+T + LA A +Q+
Sbjct: 506 -----------------------AVHSAHGVQESAVYVPGHQPLTV--SMLAAAPLHEQK 540
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
++GE LY L+ K+TGMLLE+D E+L LLESPE+L AK+ EA+ VL+
Sbjct: 541 QMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQ 596
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 128/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 95 KSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + +RE EL +A+ T N+Y+KNL ++D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRQKREAELGA---RALGFT-------NIYVKNLHANVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L++LFS+FG + S KVMRD +G S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRAERQSELKRRFEQMK 284
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E+FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + + R
Sbjct: 72 MNFEVIKGQPIRIMWSHR 89
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/295 (48%), Positives = 200/295 (67%), Gaps = 16/295 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K++R+ K +F NV+VKN+D D++ +++F +G +TSA
Sbjct: 203 MLLNDKKVYVGHHVSKKDRQAKLDEQKKQFTNVYVKNIDPEANDDEFRELFTPFGNVTSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD +G+S+ FGFVNFE ++A KAV+ L+ F R+ +V +AQKKSERE+EL+ +
Sbjct: 263 VLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQKKSEREEELRRSY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D +DDEKL++ F FG ITS KVMR G SKG GFV
Sbjct: 323 EQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KM+ SKPLYV++AQR+E RR +L++Q +Q + M + MP
Sbjct: 383 FSSPDEATKAVAEMNNKMMGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGMP 442
Query: 239 ---MYPP-------GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
M PP P G+ F YGQ P ++PP+ + QQ VPGM P AP
Sbjct: 443 AGYMNPPMYYPGPGFPPPAGRGFGYGQ--PGMMPPRPRYAPGQQ-VPGM-PVPAP 493
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 118/208 (56%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD++ ++ L F +G + S V D G+SK +GFV++E
Sbjct: 129 QRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++A+NG +D++ YVG K +R+ +L Q K Q N+Y+K
Sbjct: 189 TNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQ----------KKQFTNVYVK 238
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ +D++ +ELF+ FG +TS + RD G S+G GFV F T EEA +A+ ++
Sbjct: 239 NIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDF 298
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V+ AQ+K ER L+ + Q +
Sbjct: 299 KGRKLFVSRAQKKSEREEELRRSYEQAK 326
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 17/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 53 SLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQ 112
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL D+ID++ L
Sbjct: 113 LNYSLIKGRACRIMWSQR------------DPALRKTG---QG-NIFIKNLDDAIDNKAL 156
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 157 HDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHV 216
Query: 209 RKEERRARLQAQFSQMRPV 227
K++R+A+L Q Q V
Sbjct: 217 SKKDRQAKLDEQKKQFTNV 235
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 181/508 (35%), Positives = 258/508 (50%), Gaps = 118/508 (23%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ DK+VFV F + +R E F N+FVKNL +S + L K F ++G + S
Sbjct: 152 MLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVVSH 211
Query: 59 VVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
V+ D G SKC GF++F+ D A AVE ++ K+ + ++ Y G+AQKK+ER ELK +
Sbjct: 212 KVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAK 271
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E+ +E + ++QG+NLY+KNL DSIDDE L+E F +FG ITS KV+ D
Sbjct: 272 YEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNEKDEVGQAK 331
Query: 167 ----------------------------------PSGISKGSGFVAFSTPEEASRALAEM 192
G SKG GFV FS+PEEA++A+ EM
Sbjct: 332 SDQAPEEEGEAVEEKKTEDSEAAGDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEM 391
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFL 252
NG++ KPLYV +AQRKE+R+A LQ Q+ M+ V+ G + M G + Q F
Sbjct: 392 NGRIFGGKPLYVGLAQRKEDRKAHLQQQY--MQRVSTGIRMQAFM-----GNQVVNQNF- 443
Query: 253 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM---------PNFFVPVVSQGQQGQ---R 300
Q P I+P G Q M P G PM PN +V Q Q
Sbjct: 444 --QPPRYILPTMQGQPVQ------MFPQGTPMVRATPRWAPPNQVRHIVYQSHSQQILAS 495
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
P R V+ Q P ++ QMPP+
Sbjct: 496 PDAR-----VRNVQIPSEVI--QMPPQ--------------------------------- 515
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL-ERDAAAKVTGMLLE 419
+P ++ G P T S+ LANA+P++Q+ +LGE L+PL++ + D A K+TGMLLE
Sbjct: 516 -MPHQNQPAGDQAPETLTSSMLANANPQEQKQMLGERLFPLIQSMAATDLAGKITGMLLE 574
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLR 447
+D +E+LH+L++ E LK+KV EA+ VL+
Sbjct: 575 IDNSELLHMLDNRELLKSKVDEAVLVLK 602
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 118/197 (59%), Gaps = 12/197 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L F +G I S V+ D +G SK FGFV++E+ + A +A+E +
Sbjct: 91 NVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKV 149
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +V + + +++R +E F A K NL++KNL DS D + L
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMRE----FGDAAKHFT------NLFVKNLPDSWDTDALL 199
Query: 150 ELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F +FG + S KV+ D +G+SK GF++F ++A A+ M+ K I K LY AQ
Sbjct: 200 KNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQ 259
Query: 209 RKEERRARLQAQFSQMR 225
+K ER + L+A++ +++
Sbjct: 260 KKAERSSELKAKYEKIK 276
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + +G N++IKNL SID++ L
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQG----------------NVFIKNLDRSIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV + + E A RA+ ++NG ++ K ++VA +
Sbjct: 107 YDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFK 165
Query: 209 RKEER 213
+ +R
Sbjct: 166 SRNDR 170
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 186/476 (39%), Positives = 263/476 (55%), Gaps = 69/476 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +Q+RE A F N++VKNL + ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +G+S+ FGFVNFE ++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +F
Sbjct: 221 KVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E +++QG+NLY+KNL DSI+DE+LKE+FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPR 236
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ + RP + P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRR-RPSHPVLSSFQQPT 398
Query: 237 MPMYPPGPSGLGQQFLYG-----------------QAPPAIIPPQAG----FGYQQQLVP 275
+ P P Q Y PP+ PP A Q P
Sbjct: 399 SYLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPSTCPPAASVVQPLSTTQH--P 456
Query: 276 GMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY 331
+ GA + VP VV+ G Q PGG + P Q ++PH RG +
Sbjct: 457 CIHLRGASQVSSQVPHTQRVVNIGTQTTGPGGEGSSIPGQL------LVPH----RGTS- 505
Query: 332 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
V G+ V P+T + LA A +Q+
Sbjct: 506 -----------------------AVHSAHGVQESAVYVPGHQPLTV--SMLAAAPLHEQK 540
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
++GE LY L+ K+TGMLLE+D E+L LLESPE+L AK+ EA+ VL+
Sbjct: 541 QMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQ 596
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 128/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 95 KSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + +RE EL +A+ T N+Y+KNL ++D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRQKREAELGA---RALGFT-------NIYVKNLHANVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L++LFS+FG + S KVMRD +G S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRAERQSELKRRFEQMK 284
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E+FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + + R
Sbjct: 72 MNFEVIKGQPIRIMWSHR 89
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 190/483 (39%), Positives = 262/483 (54%), Gaps = 50/483 (10%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE +F NV+VKN + E L+K+F ++G ITS
Sbjct: 183 MLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSC 242
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM +GKSK FGFV F N ++A AV+AL+ + D + +V +AQKKSER ELK
Sbjct: 243 EVMTV-EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKK 301
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +++DD+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 302 KHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGF 361
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPP 235
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 362 VCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPG 421
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
MY P G G Y A P + Q F QQ+V RP G PV +Q
Sbjct: 422 -AAMYNPTQPGPG----YYVANP--MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQY 471
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--- 352
Q PG + Q QQ P + PP+ + G MQ P G
Sbjct: 472 MMAQGPGVYQNRMGRPQNQQGGP----RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNV 527
Query: 353 --------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
P P P + +G P+T S LA A+P++Q+
Sbjct: 528 PRPPQQQQQQRPAPTGPKAPPQPYQAYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQ 584
Query: 393 LLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
LLGE +Y L+E+L +D A K+TGM+LE+D +E++ +L+ E ++KV EA VL S
Sbjct: 585 LLGERIYALIEKLYPGHKD-AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSA 643
Query: 450 AQQ 452
+Q
Sbjct: 644 QKQ 646
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 13/214 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+ ++ + F +G I S V D DG SK +GFV+FE
Sbjct: 109 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG ++ +VGK Q +++R +EL ET +F N+Y+K
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETAKQF--TNVYVK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD + E L++LF++FG ITSC+VM G SKG GFVAF+ PEEA A+ ++ I
Sbjct: 219 NFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTI 277
Query: 198 --VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
L+V AQ+K ER A L+ + Q + M
Sbjct: 278 EGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L + L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL ID++ +
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAG----------------NIFIKNLDKVIDNKSI 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A A+ ++NG ++ K ++V Q
Sbjct: 137 YDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ 196
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 197 PRAQRNREL 205
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 241/455 (52%), Gaps = 58/455 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IN ++VFVG F +ER + KF NVF KNL E + LK++ +YG IT+ +
Sbjct: 161 MMINGQKVFVGPFKSSKERGQ-PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITI 219
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGF NFE+A+ A VE NGK F + Y G+AQKK ERE ELK FE
Sbjct: 220 MADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFET 279
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAF 179
K+QG+NLYIKN+ DSID++KL+E+FS+FGTITS VM+D + SKG GFV +
Sbjct: 280 -------KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ P+EA+RA+ EMNG+MI +KPLYVA+AQRK+ RRA+L+ Q Q + +PP
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPP---T 389
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPVVSQ 294
Y GP PA + PQ + QQ++P R P G P + ++
Sbjct: 390 YGSGPVFF---------TPAPVNPQVVY---QQMMPRPRNWNGQPVGVPQGQYANMNYAR 437
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
GQ R GP Q QP Q PR D+ +PV
Sbjct: 438 GQP-------RQNGPRQNGGQP-----RQNGPRP----------------DVSGAQPIPV 469
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
+ + + L + + S +QQ LGE LYPL+ + D A K+T
Sbjct: 470 QQQTTLDVAQTQQAASSAESALNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKIT 529
Query: 415 GMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GMLL+ + E+ L + + L K+ EA+EVL S
Sbjct: 530 GMLLDSLPVEELFTLTQRQDLLADKIREALEVLGS 564
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+ + L F +G I S V+ D SK FGFV++E
Sbjct: 87 QRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+ +NG + ++ +VG + ER Q + +F N++ K
Sbjct: 147 TQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKF-------------TNVFFK 193
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + + ++LKEL ++G IT+ +M D G SKG GF F + E A + NGK+
Sbjct: 194 NLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIF 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
KP+Y AQ+K ER A L+ F
Sbjct: 254 HGKPIYAGRAQKKIEREAELKHTF 277
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
++++V +L +++ L +IF + G +++ V RD + + S + +VN+ N DA +A++
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + +Q+ + G N++IKNL ID +
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSLRKSGVG----------------NVFIKNLDKGIDHKA 113
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D SKG GFV + T E A +A+A++NG MI + ++V
Sbjct: 114 LYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPF 173
Query: 208 QRKEERRARLQAQFSQM 224
+ +ER + +F+ +
Sbjct: 174 KSSKERGQPTEVKFTNV 190
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 190/483 (39%), Positives = 262/483 (54%), Gaps = 50/483 (10%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE +F NV+VKN + E L+K+F ++G ITS
Sbjct: 120 MLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSC 179
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM +GKSK FGFV F N ++A AV+AL+ + D + +V +AQKKSER ELK
Sbjct: 180 EVMTV-EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKK 238
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +++DD+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 239 KHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGF 298
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPP 235
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 299 VCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPG 358
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
MY P G G Y A P + Q F QQ+V RP G PV +Q
Sbjct: 359 -AAMYNPTQPGPG----YYVANP--MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQY 408
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--- 352
Q PG + Q QQ P + PP+ + G MQ P G
Sbjct: 409 MMAQGPGVYQNRMGRPQNQQGGP----RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNV 464
Query: 353 --------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
P P P + +G P+T S LA A+P++Q+
Sbjct: 465 PRPPQQQQQQRPAPTGPKAPPQPYQAYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQ 521
Query: 393 LLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
LLGE +Y L+E+L +D A K+TGM+LE+D +E++ +L+ E ++KV EA VL S
Sbjct: 522 LLGERIYALIEKLYPGHKD-AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSA 580
Query: 450 AQQ 452
+Q
Sbjct: 581 QKQ 583
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 13/214 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+ ++ + F +G I S V D DG SK +GFV+FE
Sbjct: 46 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 105
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG ++ +VGK Q +++R +EL ET +F N+Y+K
Sbjct: 106 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETAKQF--TNVYVK 155
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD + E L++LF++FG ITSC+VM G SKG GFVAF+ PEEA A+ ++ I
Sbjct: 156 NFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTI 214
Query: 198 --VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
L+V AQ+K ER A L+ + Q + M
Sbjct: 215 EGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 248
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 196/288 (68%), Gaps = 12/288 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ ++ +F N++VKNLD T ++ ++F +YG +TSA
Sbjct: 200 MLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSA 259
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D +GKSK FGFVNFE D+A KAV+ LN + ++ +V +AQKK+ERE+EL+ +
Sbjct: 260 VISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREEELRRSY 319
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D +DD+KL+ F FGTITSCKVMRD G SKG GFV
Sbjct: 320 EQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVC 379
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+P+EA++A+AEMN KMI +KPLYV++AQR+E RR +L++Q +Q + M + +P
Sbjct: 380 FSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGLP 439
Query: 239 -MYPPGP--------SGLGQQFLYGQAPPAIIPPQAGFGYQQQL-VPG 276
Y GP + + G P ++PP+ +G Q+ VPG
Sbjct: 440 GSYVNGPLYYPPGPGFPPQPRGMMGYPQPGMLPPRPRYGPNGQVPVPG 487
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE+ ++ L F +GT+ S V D G+SK +GFV++E
Sbjct: 126 QRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRSKGYGFVHYE 185
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG +D++ YVG + ER+ +E++ QF NL
Sbjct: 186 TAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQF-------------TNL 232
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KNL + ++ ELF ++G +TS + D G SKG GFV F T +EA +A+ E+N
Sbjct: 233 YVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELND 292
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ K L+V+ AQ+K ER L+ + Q +
Sbjct: 293 FELKGKKLFVSRAQKKAEREEELRRSYEQAK 323
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 115/208 (55%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 50 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 109
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 110 LNYSLIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEAIDNKAL 153
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FGT+ SCKV D +G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 154 HDTFAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHI 213
Query: 209 RKEERRARLQ---AQFSQMRPVAMGPSV 233
++ER+++L+ AQF+ + + P V
Sbjct: 214 SRKERQSKLEEMRAQFTNLYVKNLDPEV 241
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 189/483 (39%), Positives = 261/483 (54%), Gaps = 50/483 (10%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE +F NV+VKN + E L+K+F ++G ITS
Sbjct: 183 MLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSC 242
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM +GKSK FGFV F N ++A AV+AL+ + D + +V +AQKKSER ELK
Sbjct: 243 EVMTV-EGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKK 301
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +++DD+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 302 KHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGF 361
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPP 235
V F PEEA+ A+ EMN KM+ SKPLYVA+ QRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 362 VCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPG 421
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
MY P G G Y A P + Q F QQ+V RP G PV +Q
Sbjct: 422 -AAMYNPTQPGPG----YYVANP--MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQY 471
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML--- 352
Q PG + Q QQ P + PP+ + G MQ P G
Sbjct: 472 MMAQGPGVYQNRMGRPQNQQGGP----RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNV 527
Query: 353 --------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
P P P + +G P+T S LA A+P++Q+
Sbjct: 528 PRPPQQQQQQRPAPTGPKAPPQPYQAYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQ 584
Query: 393 LLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
LLGE +Y L+E+L +D A K+TGM+LE+D +E++ +L+ E ++KV EA VL S
Sbjct: 585 LLGERIYALIEKLYPGHKD-AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSA 643
Query: 450 AQQ 452
+Q
Sbjct: 644 QKQ 646
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 122/214 (57%), Gaps = 13/214 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+ ++ + F +G I S V D DG SK +GFV+FE
Sbjct: 109 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG ++ +VGK Q +++R +EL ET +F N+Y+K
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETAKQF--TNVYVK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD + E L+++F++FG ITSC+VM G SKG GFVAF+ PEEA A+ ++ I
Sbjct: 219 NFGDHYNKETLEKVFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTI 277
Query: 198 --VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
L+V AQ+K ER A L+ + Q + M
Sbjct: 278 EGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L + L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL ID++ +
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAG----------------NIFIKNLDKVIDNKSI 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A A+ ++NG ++ K ++V Q
Sbjct: 137 YDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ 196
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 197 PRAQRNREL 205
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 192/264 (72%), Gaps = 9/264 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ K+VFVG FL++ ER V + + NVFVKNL E+ TDE+++K+F E+G +TS +
Sbjct: 186 MLLEGKKVFVGPFLKRTER-PVDKEQHYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAI 244
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D GKSK FGF+NFE+A+ A AV ALNGK+ D +E Y G+AQKK+ERE ELK +F++
Sbjct: 245 MKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKFDE 304
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+E + K+QG+NLY+KNL D +DD++L+ F+ GTITS KVM+D +G SKG GFV +S
Sbjct: 305 VRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYS 364
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR--PVAMGPSVPPRMP 238
+PEEA+RA+ EMNGKM++ KP+YVA+AQR+E RR +L+ Q++Q R P++ P+ P +P
Sbjct: 365 SPEEATRAVTEMNGKMLLGKPMYVALAQRREVRRQQLEQQYTQQRVAPMSGRPNAPGPVP 424
Query: 239 M---YPPGPSGLGQQFLYGQAPPA 259
M +PP QQ+ APP
Sbjct: 425 MPGVFPPNAVSFPQQYF---APPT 445
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 15/209 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ K+ N+F+KNLD+ ++ L F +GTI S V D G SK +GFV++E
Sbjct: 112 HRDPAFRKSGVGNIFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYE 171
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYI 136
+ A A+E +NG + ++ +VG K++ER VDK Q N+++
Sbjct: 172 KEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTER--------------PVDKEQHYTNVFV 217
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL +++ DE+++++F+E G +TS +M+D +G SKG GF+ F E A A+ +NGK
Sbjct: 218 KNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKE 277
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I K LY AQ+K ER A L+ +F ++R
Sbjct: 278 IDGKELYCGRAQKKAEREAELKQKFDEVR 306
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
++++V +LD T+ L +IF + G + S V RD +S + +VN+ +A DAA A
Sbjct: 24 SSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAER 83
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDE 146
A+ + V ++ E + ++ + ++ + G+ N++IKNL ID++
Sbjct: 84 AIEALNYTS----VIPGKEGGEDSKPMRIMWSH--RDPAFRKSGVGNIFIKNLDKDIDNK 137
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + F+ FGTI SCKV D +G SKG GFV + E A A+ ++NG ++ K ++V
Sbjct: 138 ALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGP 197
Query: 207 AQRKEERRARLQAQFSQM 224
++ ER + ++ +
Sbjct: 198 FLKRTERPVDKEQHYTNV 215
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 171/223 (76%), Gaps = 2/223 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER+ + +F NV+ KN+D TDE+ +K+F +YG ITS
Sbjct: 196 MLLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSC 255
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD DGKSK FGFVNFEN D+A AV+ L+ F ++ +V +AQKKSERE+EL+ +
Sbjct: 256 VLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 315
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + KFQG+NLY+KN+ +S DDE+L++ F+ FG ITSCK+MR PSG+S+G GFV
Sbjct: 316 EAAKNEKLAKFQGVNLYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVC 375
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
+S PEEA++A++EMNGKM+ ++PLYVA+AQRK+ RR +L+AQ
Sbjct: 376 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 418
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 11/204 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ +T N+F+KNLD ++ L F +G I S V G S +GFV++E
Sbjct: 123 QRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATSESG-SLGYGFVHYE 181
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++ +NG +D++ YVG + ER+ ++ +E+ +F N+Y K
Sbjct: 182 TAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKI--------EESRARF--TNVYCK 231
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + DE+ ++LF+++G ITSC + RD G SKG GFV F +EA A+ E++
Sbjct: 232 NVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDF 291
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
+ L+VA AQ+K ER L+ +
Sbjct: 292 KGQKLFVARAQKKSEREEELRRSY 315
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 21/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VNF NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A++ T QG N++IKNL ID++ L
Sbjct: 107 LNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFIKNLDAGIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV SG S G GFV + T E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHI 209
Query: 209 RKEERRARLQ---AQFSQM 224
++ER+A+++ A+F+ +
Sbjct: 210 PRKERQAKIEESRARFTNV 228
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
SP++Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV+EA+EV
Sbjct: 474 SPDEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVSEALEV 533
Query: 446 LRSVAQ 451
L+ Q
Sbjct: 534 LKEYQQ 539
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 169
EQ G EQA + +LY+ L S+ + L E+F+ G + S +V RD +
Sbjct: 25 EQPAAGNGEQANRNADAAANNTSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTR 84
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 85 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 124
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 172/231 (74%), Gaps = 2/231 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + ++ER++ +K ++ N++VKNLD E +++FG++G ITSA
Sbjct: 198 MLLNDKKVFVGHHIPRKERQSKIDEMKAQYTNIYVKNLDPELGQEGFEELFGKFGNITSA 257
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKS+ FGFVNFE+ + AA AVE L+ + + R+ YV +AQKKSERE EL+ +
Sbjct: 258 ALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARAQKKSEREDELRKSY 317
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A +E + K+QG+NLYIKNL D IDDEKL+ F FGTITSCKVMRD SKG GFV
Sbjct: 318 ENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVC 377
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
FS+P+EA++A++EMN KMI SKPLYV++AQR+E RR +L+ Q +Q + M
Sbjct: 378 FSSPDEATKAVSEMNNKMIGSKPLYVSLAQRREVRRQQLETQIAQRNQIRM 428
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G SK +GFV++E
Sbjct: 124 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYE 183
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++++NG +D++ +VG + ER+ E+K Q+ N+
Sbjct: 184 TAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY-------------TNI 230
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KNL + E +ELF +FG ITS + +D G S+G GFV F + E+A+ A+ ++
Sbjct: 231 YVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHD 290
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I + LYVA AQ+K ER L+ + +
Sbjct: 291 TEINGRKLYVARAQKKSEREDELRKSYENAK 321
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 112/208 (53%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ NA D +A++
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 108 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 151
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K ++V
Sbjct: 152 HDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHI 211
Query: 209 RKEERRARL---QAQFSQMRPVAMGPSV 233
++ER++++ +AQ++ + + P +
Sbjct: 212 PRKERQSKIDEMKAQYTNIYVKNLDPEL 239
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 195/564 (34%), Positives = 276/564 (48%), Gaps = 117/564 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D+ TTDE+ +++F ++G ITSA
Sbjct: 205 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSA 264
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + AA AV+ LN K F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 265 TLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQ 324
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDD-------------------------------- 145
+E A E K+QG+NLYIKNL D IDD
Sbjct: 325 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDNLAAESSSDSE 384
Query: 146 -------------EKLKELFSEFGTITSCKVMRDPS--------GISKGSGFVAFSTPEE 184
E+ K+ +E K + S G SKG GFV FS+P+E
Sbjct: 385 KEAKSEGKENEPPEESKDEAAEKAETKDTKEAKTESKKADKKLLGKSKGFGFVCFSSPDE 444
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP 244
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + +
Sbjct: 445 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAA---------A 495
Query: 245 SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM--PNFFVPVVSQGQQGQRPG 302
+G+ Q F+ PP P QQ +P R G P P +P + G+ GQ G
Sbjct: 496 AGMPQPFM---QPPVFYGPG-----QQNFLPNQR-GGMPFQQPGMVIPQMPGGRHGQFSG 546
Query: 303 -----GRRGAGPVQQT--------QQPLPIMPHQMPPRGHAY------RYPLGRNMQDFP 343
G RG P QQ Q LPI P G Y + P GR P
Sbjct: 547 FPGQQGGRGMNPNQQIPPNAYGLGAQGLPISMQGGMPNGLNYPQMAQVQAPFGRGRGQVP 606
Query: 344 FDMG----AGSMLP-------VPVDMGAGIPRRDA-------SVGQPMPITA---LSTAL 382
G M P +P+ G G P + + GQ ++ L+ +
Sbjct: 607 AVQGMPPNVQGMGPNAQFGRGMPMQQGMGRPGQAGRGQGPAQAAGQRDETSSPSGLTLQM 666
Query: 383 ANAS-PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
NA+ P QQ+ +LGE++YP + + + A K+TGMLLEMD E+L L++ ALKAKV E
Sbjct: 667 LNAAPPAQQKQMLGEAIYPKIHAHQPELAGKITGMLLEMDNAELLALVDDDTALKAKVDE 726
Query: 442 AMEVLRSVAQQQANNPADQLASLS 465
A+ V + + + D +S
Sbjct: 727 ALTVYDEYVKNKGSESGDAAPDVS 750
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 118/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ DE+ +ELF +FG ITS + RD SG S+G GFV F++ E A+ A+ +N
Sbjct: 238 YVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLN 297
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K S+ LYV AQ+K ER L+ Q+ R
Sbjct: 298 EKDFKSQKLYVGRAQKKHEREEELRKQYEAAR 329
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGRPCRI------------MWSQRDPALRKTG---QG-NVFIKNLDTAIDNKAL 158
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 218
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 219 AKKDR----QSKFEEMK 231
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/282 (50%), Positives = 186/282 (65%), Gaps = 20/282 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N++++FVG +R+++RE KF NV++KNL +++DL++ F +G ITSAVV
Sbjct: 153 MLANNRKMFVGLHMRRRDREV-----KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVV 207
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DG SKCFGFVNF+ + A +AVE NGK D+ YVG+AQKK ER+ ELK +F +
Sbjct: 208 MRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGR 267
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
VDK G+NLY+KN+ D I+DE LK+LF EFG + SCKVM D G SKGSGFV+F+
Sbjct: 268 GRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFA 327
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T E RA+ MNG+++ KPLYV +AQ KEER+A L A F+Q R +AM S Y
Sbjct: 328 TAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQ-RNLAMAAS------QY 380
Query: 241 PPGPSGLGQQFLYGQ--APPAIIPPQ-AGFGYQQQLVPGMRP 279
GP QQ +G +P I PPQ A FG+ Q VPGM P
Sbjct: 381 -AGP----QQVYFGHPSSPGPIAPPQGAVFGFPQHFVPGMGP 417
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 21/201 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L E+ + L +F + + + V RD G S +G+VNF + +A +A+EA
Sbjct: 3 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 62
Query: 89 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LN +GK + S R+ L+ K NL++KNL +ID +
Sbjct: 63 LNFTPL------IGKYIRVMFSNRDPSLR------------KSGRANLFVKNLEPNIDSK 104
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L E+FS FG I SCKV D +G SKG GFV + T E A A+ +NG + ++ ++V +
Sbjct: 105 NLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGL 164
Query: 207 AQRKEERRARLQAQFSQMRPV 227
R+ +R + + + P
Sbjct: 165 HMRRRDREVKFTNVYIKNLPT 185
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 188/483 (38%), Positives = 268/483 (55%), Gaps = 81/483 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +Q+RE A F NV+VKNL ++ L+ +F ++G + S
Sbjct: 224 MLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSV 283
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +G+S+ FGFVNFE ++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +F
Sbjct: 284 KVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRF 343
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E +++QG+NLY+KNL DSI+DE+LKE+FS +G ITS KVM + S SKG GFV
Sbjct: 344 EQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMTESSH-SKGFGFVC 402
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM--RPV--------- 227
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ + RPV
Sbjct: 403 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRQLSRPVLSSFQQPTN 462
Query: 228 -------------------AMGPSVP-PRMPMYPPGPSGLGQQFLYGQAPPA--IIPPQA 265
+M P P PR + P GPS PPA ++ P
Sbjct: 463 YLLSAVSQSTAQAVYYGSGSMAPMQPDPRWAVQPHGPS--------STCPPAASVVQPLG 514
Query: 266 GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP 325
+ + + A + +P+ VV+ G Q GG + P Q P++ H
Sbjct: 515 TMQHPRVHLNNASQASSQVPH-TQRVVNIGTQTTGSGGEGCSIPGQ------PLLTH--- 564
Query: 326 PRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 385
RG + V G+ V P+T + LA A
Sbjct: 565 -RGSS------------------------AVHSAHGVQEPAVYVPGHQPLTV--SMLAAA 597
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+Q+ ++GE LY L++ K+TGMLLEMD E+L LLESPE+L AK+ EA+ V
Sbjct: 598 PLHEQKQMIGERLYSLIQDTCAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAV 657
Query: 446 LRS 448
LR+
Sbjct: 658 LRA 660
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 158 KSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 216
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + +RE EL +A+ T N+Y+KNL +D
Sbjct: 217 AINTMNGMLLNDRKVFVGHFKSRQKREAELGA---RALGFT-------NVYVKNLHMDMD 266
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD +G S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 267 EQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYV 326
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F Q++
Sbjct: 327 GRAQKRAERQSELKRRFEQVK 347
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E+FS GTI S +V RD + S G ++ F P +A RAL
Sbjct: 75 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 134
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +MI +P+ + + R
Sbjct: 135 MNFEMIKGQPIRIMWSHR 152
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 177/231 (76%), Gaps = 2/231 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG + ++ER++ +K +F NV+VKN+D TDE+ +++F ++G +TSA
Sbjct: 199 MLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD +G+SK FGFVNFE ++A K VE+L+ + + ++ +V +AQKK+ERE+EL+ +
Sbjct: 259 VIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLFVTRAQKKAEREEELRKSY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLYIKNL D +DDE+L++ F FGTITS KVMRD G SKG GFV
Sbjct: 319 EQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSSKGFGFVC 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
FS+P+EA++A+AEMN KMI +KPLYV++AQR+E RR +L++Q +Q + M
Sbjct: 379 FSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRM 429
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G+SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG +D++ YVG + ER+ +E+K QF N+
Sbjct: 185 TAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQF-------------TNV 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ ++LF +FG +TS + RD G SKG GFV F EEA + + ++
Sbjct: 232 YVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHD 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ K L+V AQ+K ER L+ + Q +
Sbjct: 292 FELNGKKLFVTRAQKKAEREEELRKSYEQAK 322
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 20/198 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 110 NYSLIKGRACRIMWSQR------------DPALRKTG---QG-NIFIKNLDEGIDNKALH 153
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 154 DTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHIS 213
Query: 210 KEERRARLQ---AQFSQM 224
++ER+++++ AQF+ +
Sbjct: 214 RKERQSKIEEMKAQFTNV 231
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 245/443 (55%), Gaps = 62/443 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K + N++VKN+D T+++ +++F YG ITS
Sbjct: 214 MLLNDREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSI 273
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVN+E A AVEALN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 274 YLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQY 333
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL D ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 334 EAIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVC 393
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTPEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 394 FSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAA--- 450
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP----VVSQ 294
G P +PP +G Q PG R AP P P ++ +
Sbjct: 451 ---------------GGFPGQFMPPMY-YGQQGFFPPGGRGNAAPFPG---PNPQMMMRR 491
Query: 295 GQQGQ-------RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMG 347
GQ GQ RPG QP+P+ + +PP+ R + Q P
Sbjct: 492 GQPGQPFPEQWPRPG---------PNGQPVPV--YGIPPQFQDQRAQQQQQQQQQPQQPQ 540
Query: 348 AGSMLP-VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV---- 402
P G +P ++ L+ +++ PEQQ+ +LGE LYP +
Sbjct: 541 QQQQRGYYPGQAGVKVPAKE-----------LAAIISSVPPEQQKRILGEELYPRIVATG 589
Query: 403 EQLERDAAAKVTGMLLEMDQTEV 425
+ E +AA K+TGM+L ++ E+
Sbjct: 590 KAQEPEAAGKITGMMLGLENQEI 612
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 140 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYE 199
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NG +DRE +VGK K +RE +FE+ MK N+Y+K
Sbjct: 200 TGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRES----KFEE-MKANY-----TNIYVK 249
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ +++ +ELF+ +G ITS + +D G SKG GFV + + A A+ +N K I
Sbjct: 250 NIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEI 309
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER L+ Q+ +R
Sbjct: 310 NGQKIYVGRAQKKRERTEELKKQYEAIR 337
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA++
Sbjct: 64 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDE 123
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 124 LNYSLVEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 167
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 168 HDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHV 227
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 228 SKKDRESKFE 237
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/224 (53%), Positives = 171/224 (76%), Gaps = 2/224 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH++ K+ER+ K++F N++VKNLD TD++ +F ++G +TSA
Sbjct: 207 MLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSA 266
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VV +D +GKSK FGFVNF++ + A AV+AL+ + + ++ +V +AQKK+ERE+EL+ +
Sbjct: 267 VVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAEREEELRKSY 326
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG NLYIKNL D +DD+KL+ F FGTITSCK+MRD G SKG GFV
Sbjct: 327 EQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTSKGFGFVC 386
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 222
+S+PEEA++A+AEMN KM+ SKPLYV+ AQR+E RR +L++Q +
Sbjct: 387 YSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIA 430
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE + L F +G + S V D +G+S+ FGFV+++
Sbjct: 133 QRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFVHYD 192
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++A+NG +D++ +VG K ER+ + Q K Q NLY+K
Sbjct: 193 TAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQ----------KSQFTNLYVK 242
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + D++ ++F++FG +TS V +D G SKG GFV F E A A+ ++ +
Sbjct: 243 NLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTEL 302
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K L+V AQ+K ER L+ + Q +
Sbjct: 303 NGKKLFVTRAQKKAEREEELRKSYEQAK 330
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 57 SLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 116
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL + ID + L
Sbjct: 117 LNYSLIKNRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDHKAL 160
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D +G S+G GFV + T E A A+ +NG ++ K ++V
Sbjct: 161 HDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYI 220
Query: 209 RKEERRARLQAQFSQM 224
K+ER+A + Q SQ
Sbjct: 221 SKKERQAHIDEQKSQF 236
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 187/532 (35%), Positives = 273/532 (51%), Gaps = 94/532 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN+ T++D +++F ++G +TS+
Sbjct: 210 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSS 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A+KAV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 270 SLARDQEGKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSY 329
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PS--------- 168
E A E +K+QG+NLYIKNL D +DD+KL+++FSEFG ITS KVMR+ P+
Sbjct: 330 EAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKVMRETPTEGDEDKKEE 389
Query: 169 -----------------------------------------GISKGSGFVAFSTPEEASR 187
G SKG GFV FS P++A++
Sbjct: 390 TQDDKEKENKEEAKEEANEETKEGEEAKDDKKTEKKSDKKLGKSKGFGFVCFSNPDDATK 449
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL 247
A+AEMN +MI +KPLYVA+AQRK+ R+++L+A + M + +G+
Sbjct: 450 AVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAA---------AAGM 500
Query: 248 GQQFLYGQAPPAIIPPQAGFGYQQQLVP-GMRPAGAPMPNFFVPVVSQGQQGQRPG---- 302
QQ++ PP P G Q +P G R P P +P V G+ GQ PG
Sbjct: 501 PQQYM---QPPVYFAP----GQQPGFMPQGGRGVPFPQPGMGMPGVQGGRPGQFPGYPQQ 553
Query: 303 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV-----PVD 357
G RG P QQ + MP Q PP+ P G P P +
Sbjct: 554 GGRGGVP-QQMPPNMYGMPGQFPPQFGQPGTPQFMAAMQAQQAALGGRGAPQGGRGGPQN 612
Query: 358 MGAGIPRRDASVGQP----MPITALSTALANASPE----------QQRTLLGESLYPLVE 403
M G P G P +P+ Q+ +LGE ++P ++
Sbjct: 613 MPGGPPMAGGMAGFPPNNRQQGGRGGPGRNGNAPQGGRGAEGAGPNQKQILGELIFPKIQ 672
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 455
+ + A K+TGMLLEMD E+++L+E ALKAKV EA+ V + Q +
Sbjct: 673 AINGELAGKITGMLLEMDNAELVNLIEDDAALKAKVDEALAVYDEYVKAQGS 724
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 136 QRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + ++ +ELF +FG +TS + RD G S+G GFV F+T E AS+A+ ++NG
Sbjct: 243 YVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLNG 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 303 KDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V ++ + +AL E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEE 119
Query: 192 MNGKMIVSKPLYVAVAQRKEERRARLQA 219
+N +I +P + +QR R Q
Sbjct: 120 LNYTLIKGRPCRIMWSQRDPALRKNGQG 147
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 260/482 (53%), Gaps = 50/482 (10%)
Query: 2 LINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
+ N +VFVG F ++ RE +F NV+VKN + E L+K+F ++G ITS
Sbjct: 124 IKNLDKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCE 183
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQ 117
VM +GKSK FGFV F N ++A AV+AL+ + D + +V +AQKKSER ELK +
Sbjct: 184 VM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKK 242
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
EQ E + K+QG+NLY+KNL +++DD+ LK+ F +G ITS KVM D +G SKG GFV
Sbjct: 243 HEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFV 302
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPR 236
F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 303 CFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPG- 361
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQ 296
MY P G G Y A P + Q F QQ+V RP G PV +Q
Sbjct: 362 AAMYNPTQPGPG----YYVANP--MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYM 412
Query: 297 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML---- 352
Q PG + Q QQ P + PP+ + G MQ P G
Sbjct: 413 MAQGPGVYQNRMGRPQNQQGGP----RGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNVP 468
Query: 353 -------------------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
P P P + +G P+T S LA A+P++Q+ L
Sbjct: 469 RPPQQQQQQRPAPTGPKAPPQPYQAYQQRP-QGIVIGGQEPLT--SAMLAAAAPQEQKQL 525
Query: 394 LGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
LGE +Y L+E+L +D A K+TGM+LE+D +E++ +L+ E ++KV EA VL S
Sbjct: 526 LGERIYALIEKLYPGHKD-AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQ 584
Query: 451 QQ 452
+Q
Sbjct: 585 KQ 586
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTP 182
+T + +LY+ +L +++ L E FS G + S +V RD + +S G +V F P
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQR 209
+A RA+ MN + + KP+ + +QR
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQR 110
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 197/308 (63%), Gaps = 35/308 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+V + K++R++ +K KF NV+VKN+D+ T+ E+ +++FG+YG ITSA
Sbjct: 189 MLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ +D +GK + FGFVNFE+ AAKAV+ LN +F ++ YVG+AQKK ER QELK Q+
Sbjct: 249 VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NL++KNL DSIDDEKLKE F+ FGTITS KVMRD +G S+G GFV
Sbjct: 309 EAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRKE RR +L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAA 428
Query: 226 ------------PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL 273
P+ G +PPR+P P P + G +PPQ FG +
Sbjct: 429 AVAGLPGQFMPPPMYYG-GIPPRVPFQGPNPQ------MAGMPKNGAMPPQQ-FGRPGPM 480
Query: 274 VPGMRPAG 281
G P G
Sbjct: 481 YGGFAPQG 488
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
E ET ++T +++V L+ + ++ L IF G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ + KA+E LN + + +Q+ ++ G N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG----------------NIYI 130
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL +ID++ L E FS FG I SCKV D +G+S+G GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 197 IVSKPLYVAVAQRKEERRARLQ 218
+ + +YVA+ K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 193/495 (38%), Positives = 264/495 (53%), Gaps = 64/495 (12%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML++DK+VFVG F + +R E K+ NVFVKN E + LK++F +YG I SA
Sbjct: 213 MLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSA 272
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW--YVGKAQKKSEREQELKG 116
VVM D +GK K FGFV + + + A+KAV+ LN + E V +AQKKSER ELK
Sbjct: 273 VVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQKKSERSAELKR 332
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++E +E V ++QG+NLY+KN+ + + DE L+ F++FGTITS KVM D +G SKG GF
Sbjct: 333 KYEALKQERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGF 392
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGP---- 231
V F PEEA+ A+ EMN KMI +KPLYVA+AQRKE+RRA+L +Q+ Q + + MG
Sbjct: 393 VCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQAAG 452
Query: 232 SVPPRMPMYPPGPSGL---------GQQFLYGQAPPAIIPP----------------QAG 266
VP +Y PG G G+ QA P PP Q
Sbjct: 453 GVPGMTQIYQPGQQGYYVPNPMAAPGRPAFQPQAAPMRGPPGQRMFNNQVFMQYPFNQQR 512
Query: 267 FGYQQQLVPGMRPAG-------APMPNFFVPVVSQGQQ------GQRPGGRRGAGPVQQT 313
G+ QQ P MR AP PN V G Q Q+ G RGA
Sbjct: 513 QGFPQQGRPPMRTQDGRQQYGMAPRPNGPPRVGGPGAQMGGAPIRQQGGAPRGATHGAPQ 572
Query: 314 QQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 373
Q+P +Q PPR H +P+ ++ Q P +GI GQ
Sbjct: 573 QKPY----YQGPPRQH---HPVQQHSQHAPQQQQQQQQQQQQPG-NSGI----VIHGQE- 619
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLES 431
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+
Sbjct: 620 --TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKDAGKITGMMLEIDNAELIMMLQD 677
Query: 432 PEALKAKVAEAMEVL 446
+ ++KV EA VL
Sbjct: 678 ADLFRSKVEEAFTVL 692
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 124/210 (59%), Gaps = 12/210 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A + N+F+KNLD ++ + F +G I S V D DG SK +GFV+FE
Sbjct: 139 QRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFE 198
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A A+E +NG D++ +VGK Q +++R +EL E +K T N+++K
Sbjct: 199 TEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELG---ESGLKYT-------NVFVK 248
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D+ KLKE+FS++G I S VM D G KG GFVA++ PE AS+A+ ++N ++
Sbjct: 249 NFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESIL 308
Query: 198 VSKPLYVAV--AQRKEERRARLQAQFSQMR 225
L ++V AQ+K ER A L+ ++ ++
Sbjct: 309 EGTELKLSVCRAQKKSERSAELKRKYEALK 338
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LYI +L + + L E FS G + S +V RD S +S G +V F P +A RAL
Sbjct: 63 SLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 122
Query: 192 MNGKMIVSKPLYVAVAQRK-EERRA 215
MN ++I +P+ + +QR RRA
Sbjct: 123 MNFEIIHGRPMRIMWSQRDPAARRA 147
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 174/231 (75%), Gaps = 2/231 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG + ++ER++ ++ F N++VKN+D TDE+ + +F +YG + S+
Sbjct: 193 MLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSS 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
++ RD G++ FGFVNFE ++A KAV+AL+ F R+ YV +AQKK+ERE EL+ Q+
Sbjct: 253 LLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKAEREAELRKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+QA +E ++K+QG+NLYIKNL D +DDEKL+ F FGTITSC+VMRD G SKG GFV
Sbjct: 313 DQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVC 372
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+S P+EA++A+AEMN KMI SKPLYV++AQRKE RR +L++Q +Q + + M
Sbjct: 373 YSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQLESQIAQRQQLRM 423
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++++NG +D++ YVG + ER+ E++ F NL
Sbjct: 179 TAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHF-------------TNL 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ + LF ++G + S + RD G + G GFV F T EEA +A+ ++
Sbjct: 226 YVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHE 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYVA AQ+K ER A L+ Q+ Q R
Sbjct: 286 SDFHGRKLYVARAQKKAEREAELRKQYDQAR 316
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 43 SLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 103 LNYSSIKNRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 147 HDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHI 206
Query: 209 RKEERRARL---QAQFSQMRPVAMGPSV 233
++ER++++ +A F+ + + P V
Sbjct: 207 SRKERQSKIDEMRAHFTNLYVKNIDPEV 234
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 210/332 (63%), Gaps = 23/332 (6%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA 330
RP G +G + P P + H + P G+A
Sbjct: 441 GRPQGFQGMPSALRQSGPRPALRH-LAPTGNA 471
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 188/551 (34%), Positives = 263/551 (47%), Gaps = 130/551 (23%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV++KN+ TD+ + +F +G +TS+
Sbjct: 206 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSS 265
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD DGKS+ FGFVNF + A+ AVE LN K F +E YVG+AQKK ERE+EL+ +
Sbjct: 266 SIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSY 325
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSG-- 175
E A E K+QG+NLYIKNL D +DDEKL+ +F+EFG ITS KVMRD PS G
Sbjct: 326 EAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSAKVMRDSPSDDEDEEGKE 385
Query: 176 ------------------------------------------------FVAFSTPEEASR 187
FV FS P++A++
Sbjct: 386 AEAEDKDKENKKADAEAEAAEAAEEENSDKEKKERKGSKKLGKSKGFGFVCFSNPDDATK 445
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMP-MYPPG 243
A+AEMN +MI KPLYVA+AQRK+ R+++L+A +QMR + P M PP
Sbjct: 446 AVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQARNQMRMQQAAAAAGMSQPFMQPP- 504
Query: 244 PSGLGQQFLYGQAPPAIIP--------PQAGFGYQQQLVPGMRPAGAP------------ 283
Y P +P PQ G G + G+RP P
Sbjct: 505 -------VFYAGQQPGFVPQGGRGIPFPQPGMG-----MTGVRPGQFPGYPQQGGRGGPQ 552
Query: 284 --------MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ-------MPPRG 328
MPN F P Q PG + +QQ Q MPP
Sbjct: 553 QIPPNMYNMPNQFPPQFGQ------PGTPQFMAAMQQAALGGGRGGPQGGRGNAGMPPNA 606
Query: 329 HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITA------LSTAL 382
P R MG G AG + + P+ A L T +
Sbjct: 607 VPGFPPNNRQA------MGRGGNR-------AGNNTNNVNSANIQPVRASDNGSALQTQI 653
Query: 383 ANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 442
+ A P QQ+ +LGE ++P ++ + + A K+TGMLLEMD +E+++L+E ALK+KV EA
Sbjct: 654 SGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSELINLIEDDAALKSKVDEA 713
Query: 443 MEVLRSVAQQQ 453
+ V + Q
Sbjct: 714 LAVYDEYVKTQ 724
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A +A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 192 TDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D++ + LF G +TS + RDP G S+G GFV F+T E AS A+ E+N
Sbjct: 239 YIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNN 298
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 299 KDFHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 115
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 116 LNYTLIKGRPCRIMWSQR 133
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 174/461 (37%), Positives = 244/461 (52%), Gaps = 75/461 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++VG L K++RE+ + + NVFVKN D +T+++L+++F YG ITS
Sbjct: 203 MLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSI 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +G +K FGFVNF DDA KAVEALN K++ + YVG+AQKK+ER EL ++
Sbjct: 263 HLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+Q +NL+IKNL +SIDD +L+E F FGTITS KVM D +G S+G GFV
Sbjct: 323 EADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKSRGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
STPEEA++A++EMN +M+ +KPLYVA+AQ K RR++L Q + M P +P
Sbjct: 383 LSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQARNQMRMQQQAGPGIP 442
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ Q YGQ P ++PP A VP P G +P F
Sbjct: 443 ------NQFVQPIFYGQQP-GMLPPGA-------RVP---PMGNQIPQF----------- 474
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV---P 355
G GP Q Q P +M P G +PV P
Sbjct: 475 ---AGMPRPGPFPQGQFP------RMAPNGQP---------------------MPVYGQP 504
Query: 356 VDMGAGIPRR--------DASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLER 407
V G G +R + + Q +L+ L EQQ+ +LGE LYP V +
Sbjct: 505 VFNGNGPQQRGYYPNNRQNKNRNQKEEGNSLAAILPQLPLEQQKRVLGEELYPKVVATNK 564
Query: 408 ----DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
+AA K+TGM+L++D E+L LLE E EA++
Sbjct: 565 TQDPEAAGKITGMILDLDNQEILQLLEDEELFNTHFNEALQ 605
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD + ++ L F +G + S V D +G SK FGFV++E+ + A A+E +
Sbjct: 141 NIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + RE YVG K +RE +F++ +K N+++KN +++L+
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRE----SRFQEMIKNYT------NVFVKNFDTESTEDELR 250
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF +G ITS + D G +KG GFV F+ ++A +A+ +N K KPLYV AQ+
Sbjct: 251 ELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQK 310
Query: 210 KEERRARLQAQFSQMR 225
K ER L ++ R
Sbjct: 311 KNERVHELTKKYEADR 326
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 23/203 (11%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVN 75
Q ET+A +++V LD + T+ DL + F G++ S V RD K S +G+VN
Sbjct: 46 QASETLA------SLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVN 99
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 135
F + +A+E LN A+ K R + + Q + +++ + N++
Sbjct: 100 FHSQAAGERALEELN------------YAEIKGVRCRLMWSQRDPSLRRSGSG----NIF 143
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL +I+++ L + FS FG + SCKV D +G SKG GFV + + E A A+ +NG
Sbjct: 144 IKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGM 203
Query: 196 MIVSKPLYVAVAQRKEERRARLQ 218
++ + +YV K++R +R Q
Sbjct: 204 LLNGREIYVGPHLAKKDRESRFQ 226
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 197/482 (40%), Positives = 269/482 (55%), Gaps = 45/482 (9%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE K+ NV+VKN + E L+K+F +YGTITS
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM DGKSK FGFV F ++A AV+ALN + D + +V +AQKKSER ELK
Sbjct: 61 DVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 119
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KVM D +G SKG GF
Sbjct: 120 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 179
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVP- 234
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 180 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPG 239
Query: 235 ----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPA---GAPMPNF 287
P+ P PGP Y A P + Q FG Q + PG R P+ N
Sbjct: 240 GGLYPQQPQ--PGPG-------YYVANP--MQQQRNFGGPQMVRPGGRWGPQNQYPVQNQ 288
Query: 288 FV----PVVSQGQQGQRPGGRRGA--GPVQQ-TQQPLPIMPHQMPPR--------GHAYR 332
++ P V Q + G RP ++G GP QQ +Q + Q PPR + R
Sbjct: 289 YMMAQGPGVYQNRMG-RPQNQQGGPRGPSQQYSQVAQGGIRMQGPPRPQNAGVQQPNVQR 347
Query: 333 YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
P + Q P G + + +G P+T S LA A+P++Q+
Sbjct: 348 PPPQQPQQQRPAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLT--SAMLAAAAPQEQKQ 405
Query: 393 LLGESLYPLVEQLE--RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
LLGE +Y L+E+L A K+TGM+LE+D +E++ +L+ E ++KV EA VL S
Sbjct: 406 LLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLASSQ 465
Query: 451 QQ 452
+Q
Sbjct: 466 KQ 467
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 198/483 (40%), Positives = 271/483 (56%), Gaps = 47/483 (9%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE K+ NV+VKN + E L+K+F +YGTITS
Sbjct: 183 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 242
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM DGKSK FGFV F ++A AV+ALN + D + +V +AQKKSER ELK
Sbjct: 243 DVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 301
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KVM D +G SKG GF
Sbjct: 302 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 361
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVP- 234
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 362 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPG 421
Query: 235 ----PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPA---GAPMPNF 287
P+ P PGP Y A P + Q FG Q + PG R P+ N
Sbjct: 422 GGLYPQQPQ--PGPG-------YYVANP--MQQQRNFGGPQMVRPGGRWGPQNQYPVQNQ 470
Query: 288 FV----PVVSQGQQGQRPGGRRGA--GPVQQ-TQQPLPIMPHQMPPR--------GHAYR 332
++ P V Q + G RP ++G GP QQ +Q + Q PPR + R
Sbjct: 471 YMMAQGPGVYQNRMG-RPQNQQGGPRGPSQQYSQVAQGGIRMQGPPRPQNAGVQQPNVQR 529
Query: 333 YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRT 392
P + Q P G + + +G P+T S LA A+P++Q+
Sbjct: 530 PPPQQPQQQRPAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLT--SAMLAAAAPQEQKQ 587
Query: 393 LLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
LLGE +Y L+E+L +D A K+TGM+LE+D +E++ +L+ E ++KV EA VL S
Sbjct: 588 LLGERIYALIEKLYPGHKD-AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLASS 646
Query: 450 AQQ 452
+Q
Sbjct: 647 QKQ 649
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 13/210 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+ ++ + F +G I S V D +G SK +GFV+FE
Sbjct: 109 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFE 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG ++ +VGK Q +++R +EL ET K+ N+Y+K
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETAKKY--TNVYVK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD + E L++LF+++GTITSC VM G SKG GFVAF+ PEEA A+ +N +
Sbjct: 219 NFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPV 277
Query: 198 VSK--PLYVAVAQRKEERRARLQAQFSQMR 225
L+V AQ+K ER A L+ + Q +
Sbjct: 278 EGSDLKLHVCRAQKKSERHAELKKKHEQHK 307
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L + L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL ID++ +
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAG----------------NIFIKNLDKVIDNKSI 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A A+ ++NG ++ K ++V Q
Sbjct: 137 YDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ 196
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 197 PRAQRNREL 205
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 179/485 (36%), Positives = 255/485 (52%), Gaps = 74/485 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I DK+V+VGHF+R+ ER ++ + N++VKN + L+K F +
Sbjct: 164 MTICDKEVYVGHFVRRTERSG---QSDWTNLYVKNFPADWDEATLRKAFEMFAA------ 214
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-----------FDDREWYVGKAQKKSE 109
DG + FG+VNFE D A A++ALNG +VG+AQKK E
Sbjct: 215 ---ADGSA--FGWVNFEGHDAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVE 269
Query: 110 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S 168
RE+ELK +F+ A E + K+QG+NL++KNL D++DD++L+E F+E+GTITS +VMR+P +
Sbjct: 270 RERELKAKFDAAKIERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPAT 329
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G S+G GFV FS+PEEA++A+ EMN K+++ KP++VA+AQRKE RRA+L+AQ +Q
Sbjct: 330 GTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRL--- 386
Query: 229 MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFF 288
P + P G +Y P G+ + P P G P+
Sbjct: 387 --------HPAHLSAPYGAAMPIMYAAGAPG--------GHPMGMAPQGHP-GVPIAGQM 429
Query: 289 VPVVSQGQQGQRPGGR-------------------RGAGPVQQTQQPLPIMPHQMPPRGH 329
+ SQG +R R R A + LP H MPP
Sbjct: 430 QQMSSQGGSNRRSRNRGGQGGQGQGAQQYKYTQNARNAASMPPNMPQLPPQAHLMPPTVG 489
Query: 330 AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 389
M + P + RR P+ ++AL ANASP
Sbjct: 490 QQPGQGFPGGPGVAPPMPPLPLQQPPPPGSSQSQRRAPE--DPLTLSAL----ANASPTL 543
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ ++GE LYPL+ + + A K+TGMLLEMD +E+LHLLESP+AL+ KVAEA+EVL+
Sbjct: 544 QKNMIGERLYPLIHHSQPELAGKITGMLLEMDNSELLHLLESPDALRMKVAEALEVLK-- 601
Query: 450 AQQQA 454
Q QA
Sbjct: 602 -QHQA 605
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 37/215 (17%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVFVKNLD S + L F +G I S V D G+S+ +G+V++E
Sbjct: 90 QRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYE 149
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A+ +N D+E YVG +++ER GQ + NLY+K
Sbjct: 150 SEDAATDAINKINSMTICDKEVYVGHFVRRTER----SGQSDWT-----------NLYVK 194
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-- 195
N D+ L++ F F D S G+V F + A A+ +NG
Sbjct: 195 NFPADWDEATLRKAFEMFAAA-------DGSAF----GWVNFEGHDAAVAAMDALNGASE 243
Query: 196 ---------MIVSKPLYVAVAQRKEERRARLQAQF 221
+ + PL+V AQ+K ER L+A+F
Sbjct: 244 LPGHAGTAPITLKSPLFVGRAQKKVERERELKAKF 278
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L ++ L +IF G + S V RD +S + +VNF N DA +A++
Sbjct: 14 SLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDT 73
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ T+ K N+++KNL SID + L
Sbjct: 74 MNYTLIKSKPCRIMWSQRDP----------------TLRKSGVGNVFVKNLDSSIDHKAL 117
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D +G S+G G+V + + + A+ A+ ++N I K +YV
Sbjct: 118 FDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFV 177
Query: 209 RKEER 213
R+ ER
Sbjct: 178 RRTER 182
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ +L + L E+F+ G + S +V RD + S G +V F +A R
Sbjct: 10 FHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAER 69
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL MN +I SKP + +QR
Sbjct: 70 ALDTMNYTLIKSKPCRIMWSQR 91
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 146/298 (48%), Positives = 192/298 (64%), Gaps = 33/298 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++V+V + K++R++ + F NV+VKNLD T+ED + +F YGTITS
Sbjct: 194 MLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSV 253
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKS+ FGFV+FEN +DA KAVEALN ++ + YVG+AQKK ER QELK Q+
Sbjct: 254 ALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQELKKQY 313
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ + E + K+QG+NL+IKNL DSIDDEKLKE F+ FGTITS +VMR +G SKG GFV
Sbjct: 314 QASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGFGFVC 373
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA+RA+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 374 FSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 433
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLG----QQFLYGQAPPAIIPPQAGF 267
P+ G VPPR MP P P LG QQF G A + PPQ GF
Sbjct: 434 AAAGIPGQFMPPMFYG-VVPPRGMPFNGPNPQQLGGMPPQQFRNGPA-YGMPPPQGGF 489
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 17/201 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNF 76
E E+ ++ +++V LD S ++ L IF G+++S V RD K+ + +VNF
Sbjct: 32 EAESPNVENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 91
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ + A+E LN R + +Q+ ++ G N++I
Sbjct: 92 NDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGSG----------------NIFI 135
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL ID++ L E FS FG I SCK+ D +G SKG GFV F E A A+ +NG +
Sbjct: 136 KNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGML 195
Query: 197 IVSKPLYVAVAQRKEERRARL 217
+ + +YVA K++R+++L
Sbjct: 196 LNGQEVYVAPHVSKKDRQSKL 216
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 318 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
P+ +PPRG + P + + P F G +P P G PR D Q
Sbjct: 445 PMFYGVVPPRGMPFNGPNPQQLGGMPPQQFRNGPAYGMPPP---QGGFPRNDNQFYQ--- 498
Query: 375 ITALSTALANASPEQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESP 432
++QR LGE LY V D AA K+TGM+L++ EV+ LLE+
Sbjct: 499 -------------QKQRQALGEQLYKKVSAKTSDEEAAGKITGMILDLPAQEVVPLLEND 545
Query: 433 EALKAKVAEAMEVLRS 448
E + EA S
Sbjct: 546 ELFEQHFNEAFAAYES 561
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 210/332 (63%), Gaps = 23/332 (6%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE+L+++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA 330
RP G +G + P P + H + P G+A
Sbjct: 441 GRPQGFQGMPSALRQSGPRPALRH-LAPTGNA 471
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 172/457 (37%), Positives = 257/457 (56%), Gaps = 41/457 (8%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+++ K++FV F++K ER+ + +TKF NV+VKNL E T++ ++ F E+G + + V+M
Sbjct: 180 MLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIM 239
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+DG+GKS+ FGFVNFE+ D+A KAVEALNG ++ +VG+AQKK+ER++ LK + ++
Sbjct: 240 KDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEM 298
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ + K + NLY+KNL S+DD+KL+E FS G ITS KVMR SG+SKG GFV FST
Sbjct: 299 VNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFST 358
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV---PPRMP 238
EEA +AL +NG ++ + LY+A+AQRKE+R+ L+ +SQ GP P
Sbjct: 359 SEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGPHFLSSGSSSP 418
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG-MRPAGAPMP---NF--FVPVV 292
Y P F + P I PQ Q G MRP AP NF F+P +
Sbjct: 419 DYSFVP------FPHPNPTPQINSPQPIICQQFGRNLGVMRPF-APQNYQQNFSTFIP-M 470
Query: 293 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 352
Q QQG G Q ++ ++P +G Y P + Q F +
Sbjct: 471 KQAQQGN----TNNWGYQQNSR---TFATSKVPTQGLNYASP---SNQKLHFKKKGNN-- 518
Query: 353 PVPVDMGAGIPRRDASVGQPMPIT--ALSTALANASPEQQRTLLGESLYPLVEQLERDAA 410
G+ SV + I A S N+ + ++G LYPLV L+ + A
Sbjct: 519 ----KSGSEEASSKGSVSEKHFIRAPAQSNVWGNS-----KEIIGHHLYPLVHSLQPELA 569
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
K+TGMLLEM+ ++++ LL+SP++L +V +A++ L+
Sbjct: 570 GKITGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQALK 606
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 13/203 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ + KT N+FVKNLD S L+ IF ++G I S V + +GKSKCFGFV F+
Sbjct: 106 HRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE-NGKSKCFGFVQFD 164
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A+ ALN D ++ +V K KK ER KE ++ + N+Y+K
Sbjct: 165 SDDSATAALNALNDTMLDGKKLFVSKFVKKCER------------KEASEETKFTNVYVK 212
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NLG+ + ++ +++ FSEFG + + +M+D +G S+G GFV F +P+EA +A+ +NG M+
Sbjct: 213 NLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
Query: 198 VSKPLYVAVAQRKEERRARLQAQ 220
SK L+V AQ+K ER+ L+ +
Sbjct: 273 GSKKLFVGRAQKKAERQELLKHE 295
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 21/203 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +LD ++ +L +F G + S + RD GKS C+ +VNF + DA+KA+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKL 148
N K +GK + + ++ + + GL NL++KNL SI+ L
Sbjct: 91 NHTKL------MGKPMR-----------IMWSHRDPLPRKTGLANLFVKNLDPSINSASL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV + +G SK GFV F + + A+ AL +N M+ K L+V+
Sbjct: 134 QDIFCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFV 192
Query: 209 RKEERR-ARLQAQFSQMRPVAMG 230
+K ER+ A + +F+ + +G
Sbjct: 193 KKCERKEASEETKFTNVYVKNLG 215
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 185/519 (35%), Positives = 264/519 (50%), Gaps = 80/519 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I K V+VG+F+ + +R++ K KFNN++VKN T DE LK++F E+G I SA V
Sbjct: 153 MSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACV 212
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV + N + A AV A++GK+ R Y +AQ+K ER++ELK + E+
Sbjct: 213 MKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEK 272
Query: 121 AMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E K+ +NLY+KNL D IDDE+LKE+FS++G I+S KVM D + SKG GFV F
Sbjct: 273 QKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKGFGFVCF 332
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP- 238
+ PE+A++A+ E NG++ SKPLYVA+AQRKE+RRA L A+ +Q A+ + PP +P
Sbjct: 333 TNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAELAAKHTQ-HLNALRSTAPPMIPA 391
Query: 239 -MYP------PGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM------RP--AGAP 283
M+P P P QQ AP ++ Q + L + RP + P
Sbjct: 392 LMHPTQNYFHPYP----QQARLYSAPGQLMQAQPRWSRNGPLAADLSQLAMSRPPLSNYP 447
Query: 284 MPNFFVPVVSQGQQGQ------------------RPGGRRGAGPVQQTQQ-----PLPIM 320
PN V + Q Q G GP QQ QQ LP+
Sbjct: 448 NPNHAVAMAPQMNMNQMRSPANVFRTIVPTPMPSMTSNMMGMGPRQQQQQVANRPVLPVQ 507
Query: 321 PHQMPPRGHAYRYP-------LGRNMQDFPFDMGAGSMLPVPVDM--GAGIPRRDASVGQ 371
P G + P N++ M M V +M AG R + +
Sbjct: 508 PVLAGQAGALAQRPQMVPGPNQAANLRQITQSMPRSQMHQVMPNMTGAAGNVRFNQTARN 567
Query: 372 PMPITALSTALANASPEQQRTLLG-----------------------ESLYPLVEQLERD 408
++A S +A A+ + + LG E L+PL+ +
Sbjct: 568 ---VSAQSAQMAPANHQNALSALGDQTTYSIGELARLSEDDQKRALGEKLFPLIREQYPQ 624
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
A K+TGMLL +D EV+H+LES + L+ K+ E + VLR
Sbjct: 625 LAHKLTGMLLGLDIPEVIHMLESKDTLQEKLQEGINVLR 663
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 12/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNL ++ ++L F +G I S + D +G SK +GFV+FE
Sbjct: 79 QRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFE 138
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A +A++ +N + YVG +S+R+ + + Q KF N+Y+K
Sbjct: 139 NEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQ----------KFN--NIYVK 186
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N DDEKLKE+F+EFG I S VM+D G SKG GFV + PE A A+A M+GK I
Sbjct: 187 NFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEI 246
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LY + AQRKEER+ L+ + + +
Sbjct: 247 GGRSLYASRAQRKEERQEELKLRLEKQK 274
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L D+ L+ F E G + A V RD KS +G+VNFE+ DA +A+E
Sbjct: 3 SLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQ 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL +I+ ++L
Sbjct: 63 MNYEVVMGRPIRIMWSQRDPSLRKSGLG----------------NIFIKNLAKTIEQKEL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D +G SKG GFV F E A RA+ ++N I K +YV
Sbjct: 107 YDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFI 166
Query: 209 RKEERRARLQAQ 220
+ +R+++ + Q
Sbjct: 167 PRSDRKSQNRKQ 178
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 194/308 (62%), Gaps = 35/308 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+V + K++R++ +K KF N++VKN+D T+ E+ +++F +YG ITSA
Sbjct: 189 MLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ +D +GK + FGF+NFE+ AA+AV+ LN F + YVG+AQKK ER+QELK Q+
Sbjct: 249 VLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NL+IKNL DSIDDEKLK+ F+ FGTITS KVM+D +G S+G GFV
Sbjct: 309 ETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRKE RR +L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQLVAGKPLYVAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAA 428
Query: 226 ------------PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL 273
P+ G +PPR+P P P + G IPPQ FG +
Sbjct: 429 AVAGLPGQFIPPPMYYG-GIPPRVPFQGPNPQ------MTGMPKNGAIPPQQ-FGRPGPM 480
Query: 274 VPGMRPAG 281
G P G
Sbjct: 481 YGGFGPQG 488
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 20/211 (9%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
E ET ++T +++V LD S ++ L IF G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ + KA+E LN + + +Q+ ++ G N+YI
Sbjct: 87 HDHEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG----------------NIYI 130
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL +ID++ L E FS FG I SCKV D +G+S+G GFV F +A A+ +NG +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGML 190
Query: 197 IVSKPLYVAVAQRKEERRARLQ---AQFSQM 224
+ + +YVA K++R+++L+ A+F+ +
Sbjct: 191 MNDQEVYVAWHVSKKDRQSKLEEVKAKFTNI 221
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/332 (46%), Positives = 209/332 (62%), Gaps = 23/332 (6%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 397
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 398 LNQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 440
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA 330
RP G +G + P P + H + P G+A
Sbjct: 441 GRPQGFQGMPSAIRQSGPRPTLRH-LAPTGNA 471
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 18/201 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPVAM 229
++ER A L A+ + V +
Sbjct: 175 SRKEREAELGAKAKEFTNVYI 195
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 172/231 (74%), Gaps = 2/231 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG + ++ER++ +K +F N+++KNLD T E+ +++F YG++TSA
Sbjct: 196 MLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSA 255
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+V D +G+SK FGFVN+E+ ++A AV+ L+ ++ YV +AQKK+ERE+EL+ +
Sbjct: 256 IVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSY 315
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + K+QG+NLY+KNL D +DD+KL+ F FGTITSCKVM D G SKG GFV
Sbjct: 316 EQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVC 375
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
FS+P+EA++A+AEMN KMI SKPLYV++AQR+E RR +L++Q +Q + M
Sbjct: 376 FSSPDEATKAIAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRM 426
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 116/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G+SK +GFV++E
Sbjct: 122 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYE 181
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG +D++ YVG + ER+ E+K QF NL
Sbjct: 182 TAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQF-------------TNL 228
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL + E+ +ELF+ +G++TS V D G SKG GFV + + EEA A+ ++
Sbjct: 229 YIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHD 288
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ K LYV AQ+K ER L+ + Q +
Sbjct: 289 TDLKGKKLYVTRAQKKAEREEELRRSYEQAK 319
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ + +IF G + S V RD +S + +VN+ N D +A+E
Sbjct: 46 SLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQ 105
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 106 LNYSLIKGRPCRIMWSQR------------DPALRKT---GQG-NIFIKNLDEQIDNKAL 149
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 150 HDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHI 209
Query: 209 RKEERRARL---QAQFSQM 224
++ER+++L +AQF+ +
Sbjct: 210 PRKERQSKLDEMKAQFTNL 228
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 265/475 (55%), Gaps = 65/475 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +Q+RE A F N++VKNL ++ L+ +F ++G S
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +G+S+ FGF+NFE ++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +F
Sbjct: 221 KVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E +++QG+NLY+KNL DSI+D++LKE+FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV-PPRM 237
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ + ++ S P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTS 399
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRP---------AGAPMPNFF 288
+ P Q Y A A + P + Q P + AP P
Sbjct: 400 YLLPAVHQSTTQTMYYSSASIAPMQPDPRWTAQPHGPSSTCPPAASVVQPLSTAPHPCIH 459
Query: 289 ----------VP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 334
VP VV+ G Q PGG P Q P++ H+ H+
Sbjct: 460 LSSASQASSQVPHTQRVVNIGTQTTGPGGEGSCIPGQ------PLLAHRGSSAVHS---- 509
Query: 335 LGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP-EQQRTL 393
+Q+ S + VP QP+ ++ L +A+P +Q+ +
Sbjct: 510 -AHGVQE--------STVYVPGH-------------QPLTVSML-----DAAPLHEQKQM 542
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+GE LY L+ K+TGMLLEMD E+L LLESPE+L AK+ EA+ VL++
Sbjct: 543 IGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLKA 597
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 95 RSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + +RE EL +A+ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRQKREAELGA---RALGFT-------NIYVKNLRVDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG S KVMRD +G S+G GF+ F EEA +A+ MNGK + + LYV
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRAERQNELKRRFEQMK 284
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E+FS GTI S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +MI +P+ + + R
Sbjct: 72 MNFEMIKGQPIRIMWSHR 89
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 173/248 (69%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 136 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 195
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 196 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 255
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 256 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 314
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 315 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 374
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 375 YQPAPPSG 382
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 70 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 128
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 129 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 178
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 179 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 238
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 239 GRAQKKVERQTELKRKFEQMK 259
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 18/186 (9%)
Query: 45 LKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103
L + F G I S V RD +S + +VNF+ DA +A++ +N + +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
+Q+ + G N++IKNL SID++ L + FS FG I SCKV
Sbjct: 62 SQRDPSLRKSGVG----------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKV 105
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V + ++ER A L A+ +
Sbjct: 106 VCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 164
Query: 224 MRPVAM 229
V +
Sbjct: 165 FTNVYI 170
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 430 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE 487
Query: 434 ALKAKVAEAMEVLRSVAQQQANNPA 458
+L++KV EA+ VL++ ++A A
Sbjct: 488 SLRSKVDEAVAVLQAHQAKEAAQKA 512
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 153/332 (46%), Positives = 210/332 (63%), Gaps = 23/332 (6%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D++LK++F ++G S
Sbjct: 152 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSV 211
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 212 KVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 271
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 272 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVC 330
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 331 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALPANAI 388
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+ P+ G F+ PA+ PQA G P P P + QQG
Sbjct: 389 LSQFQPAA-GGYFV-----PAV--PQAQ-GRPPYYTPNQLAQMRPNPRW--------QQG 431
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHA 330
RP G +G + P P + H + P G+A
Sbjct: 432 GRPQGFQGMPSAIRQSGPRPALRH-LAPTGNA 462
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 79 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 137
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 138 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 187
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD+ LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 188 NFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 247
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 248 SGKAIFVGRAQKKVERQAELKRKFEQLK 275
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 22/203 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 63 MN---FD---VIKGKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 104
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 105 ALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 163
Query: 207 AQRKEERRARLQAQFSQMRPVAM 229
+ ++ER A L A+ + V +
Sbjct: 164 FKSRKEREAELGAKAKEFTNVYI 186
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 207/334 (61%), Gaps = 36/334 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E D +LK++F ++G S
Sbjct: 178 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSV 237
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +F
Sbjct: 238 KVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKF 297
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + ++QG+NLYIKNL D+IDDEKL+ FS FG+ITS KVM + G SKG GFV
Sbjct: 298 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVC 356
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ M+ VA ++P
Sbjct: 357 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY--MQRVAGMRALP---- 410
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP-VVSQ--- 294
S + QF P AG GY VP + P P ++ P ++Q
Sbjct: 411 -----ASAILNQF----------QPAAG-GY---FVPAV-PQAQGRPPYYTPNQLAQMRP 450
Query: 295 ---GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP 325
QQG RP G +G + P P + H P
Sbjct: 451 NPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAP 484
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 105 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 163
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 164 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 213
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD LKELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 214 NFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 273
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 274 SGKAIFVGRAQKKVERQAELKRKFEQLK 301
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 22/194 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 89 MN---FDVMK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 130
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 131 ALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 189
Query: 207 AQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 190 FKSRKEREAELGAK 203
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 261/484 (53%), Gaps = 47/484 (9%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE KF NV+VKN E + L+K+F +YGTITS
Sbjct: 183 MLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSC 242
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM +GKSK FGFV F ++A AV+ALN + D + +V +AQKKSER ELK
Sbjct: 243 DVMTS-EGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 301
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+ EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KVM D +G SKG GF
Sbjct: 302 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 361
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPP 235
V F PEEA+ A++EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + M +VP
Sbjct: 362 VCFEKPEEATTAVSEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPG 421
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
MY P G G Y A P + Q F QL RP G P PV SQ
Sbjct: 422 G-GMYSPAQPGPG----YYVANP--MQQQRNFVGGPQLA---RPGGRWGPQNQYPVQSQY 471
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG------ 349
Q PG + Q QQ P + PP+ ++ G MQ P AG
Sbjct: 472 MMAQGPGVYQNRMGRPQNQQGGP----RGPPQQYSQVAQGGVRMQGPPRVPNAGVQQQNV 527
Query: 350 -------------SMLPVPVDMGAGIPRRDASVGQPMPITA-----LSTA-LANASPEQQ 390
P + +P I L+TA L+ A+P++Q
Sbjct: 528 QRPPPQQLQQQQQRPAPSGPKAPPQPYNQQYQQPRPQGIVIGGQEPLTTAMLSAAAPQEQ 587
Query: 391 RTLLGESLYPLVEQLE--RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ LLGE +Y L+E+L A K+TGM+LE+D +E++ +L+ + ++KV EA VL S
Sbjct: 588 KQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSDLFRSKVDEAASVLAS 647
Query: 449 VAQQ 452
+Q
Sbjct: 648 AQKQ 651
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 13/210 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+F+KNLD+ ++ + F +G I S V D +G SK +GFV+FE
Sbjct: 109 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFE 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG ++ +VGK Q +++R +EL ET KF N+Y+K
Sbjct: 169 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETAKKF--TNVYVK 218
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ + + L++LF+++GTITSC VM G SKG GFVAF+ PEEA A+ +N +
Sbjct: 219 NFGEHYNKDTLEKLFAKYGTITSCDVMTS-EGKSKGFGFVAFAEPEEAEAAVQALNDSPV 277
Query: 198 VSK--PLYVAVAQRKEERRARLQAQFSQMR 225
L+V AQ+K ER A L+ + Q +
Sbjct: 278 EGSDLKLHVCRAQKKSERHAELKKKHEQHK 307
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L + L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL ID++ +
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAG----------------NIFIKNLDKVIDNKSI 136
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A A+ ++NG ++ K ++V Q
Sbjct: 137 YDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ 196
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 197 PRAQRNREL 205
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 128/248 (51%), Positives = 172/248 (69%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E D+ LK IF +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKS+ FGFV+FE +DA +AV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM D G SKG GFV
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 400 YQPAPPSG 407
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DD+KLK++FS++G S +VM D +G S+G GFV+F E+A RA+ EMNGK +
Sbjct: 197 NFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKLIYVGRAQKKVERQTELKRKFEQMK 284
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 172/489 (35%), Positives = 254/489 (51%), Gaps = 76/489 (15%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-----------------KGQFEQ 120
+ A K+++ +NG + ++ YVGK + ERE+EL K +FEQ
Sbjct: 148 TEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFELKRKFEQ 207
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
E ++++QG+NLY+KNL D+IDDE+L++ F+ FGTITS KVM + G SKG GFV FS
Sbjct: 208 LKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFS 266
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPPRMPM 239
PEEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q M V M
Sbjct: 267 QPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANVRM---------- 316
Query: 240 YPPGPSGLGQQFLYGQAPPAIIP----PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
+GQ F G A +P PQ +G Q P PN P G
Sbjct: 317 -----QQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQTG 371
Query: 296 QQG--------------------------QRP-GGRRGAGPVQQTQQPLPIMPHQMPPRG 328
G RP G++ G + + + P+
Sbjct: 372 SSGFAMQAPFRAAPRAPAAQAGAMRNTLSARPITGQQAVGGANMQSRSMAGPAVGVSPQS 431
Query: 329 HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPE 388
Y NM++ P M + PV ++ + P+TA + LA A P+
Sbjct: 432 RPSNYKYTANMRNPPQTMPMPAQAPV---------QQAVHIQGQEPLTA--SMLAAAPPQ 480
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ +LGE L+PL++ + K+TGMLLE+D +E+LH+LE E+LKAKV EA+ VL++
Sbjct: 481 EQKQMLGERLFPLIQCMYPALTGKITGMLLEIDNSELLHMLEHSESLKAKVEEAVAVLQA 540
Query: 449 VAQQQANNP 457
+QAN P
Sbjct: 541 HQAKQANQP 549
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 30/151 (19%)
Query: 1 MLINDKQVFVGHFLRKQERE----------------TVAIKTKFN-------------NV 31
ML+N K+V+VG F+ ++ERE +K KF N+
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNL 221
Query: 32 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 91
+VKNLD++ DE L+K F +GTITSA VM + +G+SK FGFV F ++A KAV +NG
Sbjct: 222 YVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNG 280
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
+ + YV AQ+K +R+ L Q+ Q M
Sbjct: 281 RIVGSKPLYVALAQRKEDRKAHLASQYMQRM 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I + L E FS G + S +V RD + S G +V F P +A RAL
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN MI +P+ + +QR
Sbjct: 72 MNFDMIKGRPIRIMWSQR 89
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 130/248 (52%), Positives = 169/248 (68%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV+VKN E DE LK +FG++G S
Sbjct: 129 MLLNDQKVFVGRFKSRKEREAELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSV 188
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ LNGK+ ++ YVG+AQKK ER+ ELK +F
Sbjct: 189 KVMTDERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKF 248
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QGLNLY+K L D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 249 EQMKQDKITRYQGLNLYVKYLDDYIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 307
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNGK++ +KPLYVA+AQRKEER+A L + P P
Sbjct: 308 FSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLTNEHMHRTASVRAVPNPASKP 367
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 368 YQPAPPSG 375
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 11/166 (6%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D +G SK +GFV+FE + A +A+E +NG +D++ +VG+ + + ERE EL + +
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGARAK 156
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ N+Y+KN G+ +DDE LK+LF +FG S KVM D G SKG GFV+F
Sbjct: 157 EFT----------NVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSF 206
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
E+A +A+ E+NGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 59/79 (74%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ L +A+P+QQ+ +LGE L+PL++ A K+TGMLLEMD +E+LH+LESPE+L++KV
Sbjct: 516 SMLVSAAPQQQKQMLGERLFPLIQARRPTLAGKITGMLLEMDNSELLHMLESPESLRSKV 575
Query: 440 AEAMEVLRSVAQQQANNPA 458
EA+ VL++ ++A A
Sbjct: 576 DEAVAVLQAHQAKEAAQKA 594
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 52/194 (26%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
+++V +L T+ L + F G I S V RD +S + +VNF++ DA +A++
Sbjct: 11 TSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALD 70
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+N D I+ +
Sbjct: 71 TMNF-------------------------------------------------DVINGKS 81
Query: 148 LKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
++ ++S+ ++ V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 82 VRIMWSQRDPSLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGR 140
Query: 207 AQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 141 FKSRKEREAELGAR 154
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 214/312 (68%), Gaps = 9/312 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGH + ++ERE+ + +F N++VKN+ TDE+L ++FG+YGTITS
Sbjct: 179 MLLNDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSC 238
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD DG SK FGFVNFE DA AV+ L+ K F ++ YV +AQKK+ERE+EL+ Q+
Sbjct: 239 VITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQY 298
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 177
E+A E + K+QG+NLY+KNL D +DD++L++ FS +G ITS K+MRD + IS+G GFV
Sbjct: 299 EEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFV 358
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ---AQFSQMRPVAMGPSV- 233
F++PE+A+RA+ EMNG++I SKP+YVA+AQRKE RR++L+ AQ +Q++ M PSV
Sbjct: 359 CFTSPEDATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPSVF 418
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
PP M P G + + ++ AP P Q G+ Q+L P +PA P + P+++
Sbjct: 419 PPTMYGPPAGMAAAASRSVFQGAPMPSFPAQ-GYPATQRLSPPPQPA-KPAESAVRPLIA 476
Query: 294 QGQQGQRPGGRR 305
Q + P +R
Sbjct: 477 QDLENFPPETQR 488
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 114/196 (58%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S + L F +G I S + D G SK +GFV++E + A A++++
Sbjct: 117 NIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSV 176
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG + ERE +L G+ + Q N+Y+KN+ + DE+L
Sbjct: 177 NGMLLNDRKVFVGHHISRKERESKL-GE---------SRVQFTNIYVKNIPFDVTDEELS 226
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF ++GTITSC + RD G SKG GFV F ++A A+ +++ K + LYV+ AQ+
Sbjct: 227 QLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQK 286
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ + +
Sbjct: 287 KNEREEELRRQYEEAK 302
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G ++S V RD +S + +VNF DA +A+E
Sbjct: 29 SLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERALET 88
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ ++ K N++IKNL SID + L
Sbjct: 89 LNYSMIKGRSCRIMWSQRDP----------------SLRKGNNGNIFIKNLDPSIDHKAL 132
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D G SKG GFV + T E A A+ +NG ++ + ++V
Sbjct: 133 HDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHI 192
Query: 209 RKEERRARL---QAQFSQM 224
++ER ++L + QF+ +
Sbjct: 193 SRKERESKLGESRVQFTNI 211
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/299 (46%), Positives = 195/299 (65%), Gaps = 32/299 (10%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
LI ++ + V F+ + + + + F NV+VKNL E+ TD DLK++FGE+G ITSAVVM
Sbjct: 95 LIRNQHIHVCPFVSRGQWDKSRV---FTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-Q 120
+DG+GKS+ FGFVNFE A+ A A+E +NG D++E +VG+AQ+K+ R ++LK +FE +
Sbjct: 152 KDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELE 211
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+ + +G+NLY+KNL DS+D+ KL+ELFSEFGTITSCKVM +GISKG GFV FS
Sbjct: 212 KIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFS 271
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+A+ +MNGKM+ +KP+YV++AQ KE+ + LQ QF+
Sbjct: 272 TSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNP---------------- 315
Query: 241 PPGPSGLGQQFLYGQ--APPAII---PPQAGFGYQQQLVPGMR-PAGAP---MPNFFVP 290
PP P QQ ++ Q AP ++ P G+ +Q + G R P P +PNF VP
Sbjct: 316 PPSPH---QQPIFSQVVAPATMLSQQTPLRGYNFQPYSMCGSRMPNSCPPISIPNFMVP 371
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 101/192 (52%), Gaps = 15/192 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNLDES ++ L +F +G + S V RD G SK +GFV F + A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ +V +GQ++++ T N+Y+KNL ++ D LK
Sbjct: 92 NGTLIRNQHIHVCPFVS--------RGQWDKSRVFT-------NVYVKNLVETATDADLK 136
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
LF EFG ITS VM+D G S+ GFV F E A A+ +MNG ++ K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 210 KEERRARLQAQF 221
K R L+A+F
Sbjct: 197 KTNRTEDLKAKF 208
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 173/248 (69%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 400 YQPAPPSG 407
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 171 GRFKSRKEREAELGAR 186
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/248 (52%), Positives = 173/248 (69%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 400 YQPAPPSG 407
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKRKFEQMK 284
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 26/205 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQFSQMRPVAM 229
+ ++ER A L A+ + V +
Sbjct: 171 GRFKSRKEREAELGARAKEFTNVYI 195
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/333 (43%), Positives = 203/333 (60%), Gaps = 42/333 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND+QV+VG + K+ER + ++KF N++VKN+D S + +++F +GT S
Sbjct: 215 MLLNDQQVYVGLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSC 274
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+M D +G SK FGFVN+EN +DA +AVE ++ K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 275 VLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQY 334
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 177
E+ +E + K+QG+NL++KN+ +SIDDEKL++ FS FG ITS K+M D +GISKG GFV
Sbjct: 335 EKIREEKLSKYQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFV 394
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS P+EA++A+ EMN +M+ +KP+YVA+AQRKE RR +L AQ Q A +PP
Sbjct: 395 CFSNPDEATKAVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQRAMRAHQQMMPPGY 454
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
P G Y PP +PPQA +F P +Q Q
Sbjct: 455 P---------GASIFY---PPGGVPPQA-------------------RGYFNPQQAQQQM 483
Query: 298 GQRPGGRRGAGPVQ--QTQQP-LPIMPHQMPPR 327
RP R GP Q QQP P P QMPP
Sbjct: 484 MARP---RWTGPGQPPHMQQPGFP--PQQMPPH 511
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + + L F +G I S + DG+ +S GFV++E + A A++ +
Sbjct: 154 NIFIKNLHTTIDHKALHDTFSAFGKILSCKIAMDGE-RSLGHGFVHYETMEMAENAIKHV 212
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG K ER + +E KF N+Y+KN+ S+D + +
Sbjct: 213 NGMLLNDQQVYVGLHISKKERSSTI--------EEKRSKF--TNIYVKNIDASVDQKAFE 262
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+F FGT SC +M D G SK GFV + E+A RA+ EM+ K I K +YV AQ+
Sbjct: 263 EMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQK 322
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ ++R
Sbjct: 323 KFEREEELRRQYEKIR 338
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 178/261 (68%), Gaps = 9/261 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPPA 259
Y P PS + PPA
Sbjct: 398 PYQPPPSS----YFMAAIPPA 414
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD ++DE+LKE+F ++G S KVM D +G SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/248 (51%), Positives = 173/248 (69%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 206 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 265
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 266 KVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 325
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 326 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 384
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 385 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 444
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 445 YQPAPPSG 452
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 140 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 198
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 199 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 248
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KV+ D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 249 DERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 308
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 309 GRAQKKVERQTELKRKFEQMK 329
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 70/108 (64%), Gaps = 7/108 (6%)
Query: 363 PRRDASVGQPMPITAL-------STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTG 415
PR A +P P + ++ LA+A P++Q+ +LGE L+PL++ + A K+TG
Sbjct: 480 PRWTAQGARPQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITG 539
Query: 416 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 463
MLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A A+
Sbjct: 540 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVHNAT 587
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 145 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 203
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
NG ++ + ++V + ++ER A L A+ + V +
Sbjct: 204 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 240
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 178/261 (68%), Gaps = 9/261 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPPA 259
Y P PS + PPA
Sbjct: 398 PYQPPPSS----YFMAAIPPA 414
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD ++DE+LKE+F ++G S KVM D +G SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 168/225 (74%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +QERE A +F N++VKN + DE L+++F ++G S
Sbjct: 161 MLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +G+S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+SER+ ELK +F
Sbjct: 221 KVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E V+++QG+NLY+KNL D IDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L +Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTSQYMQ 384
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G S+ FGFV+FE + A +
Sbjct: 95 KSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KN +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRQEREAELGA---RALEFT-------NIYVKNFEGDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE L+ELFS+FG S KVM D +G S+G GFV F EEA +A++ MNGK + + LYV
Sbjct: 204 DECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRSERQSELKRRFEQMK 284
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGIG----------------NIFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G S+G GFV F T E A++A+ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRQEREAELGAR 186
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA+A ++Q+ +LG+ LYPL+ + A K+TGMLLE+D +E+L LLESPE
Sbjct: 530 PLTA--SMLASAPVQEQKQMLGDRLYPLIYGIHAQLAGKITGMLLEIDNSELLLLLESPE 587
Query: 434 ALKAKVAEAMEVLRS 448
+L +K+ EA+ L++
Sbjct: 588 SLHSKIEEAIAALQA 602
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 253/470 (53%), Gaps = 55/470 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+ +V+V + +++RE+ + F NV+VKN T++ L+++F YG +TS
Sbjct: 211 MLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTST 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
+ D +GK++ FGFVNFE+ +AAKAV+ALN K+ + R YVG+AQKK ERE+ L+ Q
Sbjct: 271 YLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQ 330
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
++QA +E + K+QG+NL++KNL D+IDD KLKE F+ +G ITS KVM + +G S+G GFV
Sbjct: 331 WQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSRGFGFV 390
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
++ PEEA+RA+ EM+ +M++ KPLYVA+AQRKE R +L QF Q + + +
Sbjct: 391 CYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEVRHNQLSQQFQQRNQMRLQQAAVQ-- 448
Query: 238 PMYPPGPSGLGQ---QFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
G+GQ YGQ IPP + G+R GAP P +
Sbjct: 449 -------GGMGQFVAPMFYGQ-NAGFIPP---------MPAGVR--GAPFAGNGAPQMMM 489
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQ--MPPRGH---AYRYPLGRNMQDFPFDMGAG 349
Q RPG Q +P+ P Q + P G Y P+ Q
Sbjct: 490 QQGASRPG------------QGVPVSPGQFRVGPNGQPVPMYMQPMFNEYQQQQQQQQRY 537
Query: 350 SMLPVPVDMGAGIPRRDASVG--QPMPITALSTA-----LANASPEQQRTLLGESLYPLV 402
+ AG ++ G Q TA+++A L +PEQQ+ LGE LY +
Sbjct: 538 YQRQNHGNAPAGAEKKGDKPGEEQEAAATAVNSASLADFLPKLAPEQQKRALGEELYAKI 597
Query: 403 EQL----ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
E +++A K+TGM+L MD ++L +L+ + +A+ S
Sbjct: 598 EATGKASDKEAVGKITGMMLSMDNKQILDMLKDDALFNTQFQQALSAYES 647
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNL ++ L F +G I S + D G SK FGFV++++A+ A A+E +
Sbjct: 149 NVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENV 208
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ E YV + +RE + M+E + F N+Y+KN G + +++L+
Sbjct: 209 NGMLLNNMEVYVAPHIPRKDRESK--------MQEMIKNF--TNVYVKNFGPEMTEDQLR 258
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQ 208
E+F +G +TS + D G ++G GFV F EA++A+ +N K + + LYV AQ
Sbjct: 259 EMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQ 318
Query: 209 RKEERRARLQAQFSQMR 225
+K ER L+ Q+ Q R
Sbjct: 319 KKREREESLRKQWQQAR 335
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAV 86
F +++V +LD S T+ DL +IF + G ++S V RB KS C+ +VN++ ++A A+
Sbjct: 59 FASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHAL 118
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ L ++ + +Q+ ++ G N++IKNL ID++
Sbjct: 119 DTLAFCDIKGKQCRIMWSQRDPSMRKKGTG----------------NVFIKNLHPDIDNK 162
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCK+ D G SKG GFV + E A A+ +NG ++ + +YVA
Sbjct: 163 TLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAP 222
Query: 207 AQRKEERRARLQ 218
+++R +++Q
Sbjct: 223 HIPRKDRESKMQ 234
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/336 (42%), Positives = 200/336 (59%), Gaps = 21/336 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
+I+ KQ++ G F+RK +R K+ N+++KNLD T+E L++ F E+G I S V+
Sbjct: 183 FIIDGKQIYAGKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVI 242
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+D +G S+ FGFVNFE+ +DA +A+EALNG + + YV +AQKK+EREQ L+ QFE+
Sbjct: 243 SKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEE 302
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
E + K++G N+Y+KN+ D+++D+ L+E FS G ITS K+MRD GISKG GFV FS
Sbjct: 303 KRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFS 362
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TP+EAS+A+ +G M KPLYVA+AQRKE+R+A+LQ ++Q GPS P Y
Sbjct: 363 TPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGY 422
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ----------QQLVPGMRPAGAPMPNFFVP 290
PP LY APP +IPP+ G YQ L+P RPA P P +P
Sbjct: 423 PP---------LYYTAPPGVIPPRQGLMYQPLGLRTGWRANNLIPPTRPAFQPSPIPLMP 473
Query: 291 VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 326
+ + R GR Q MPH P
Sbjct: 474 NTPRQHRQNR--GRTNGHIPQGGGHSTAFMPHLQQP 507
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 5/189 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L TD L F E+ ++ S + RD G+S C+G+VNF + DA+ A+EA
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 89 LNGKKFDDREWYVGKAQKKSE-REQELKGQFEQAMKETVDKFQGLNLYIK---NLGDSID 144
N + V + + + R + F + V LY NL DSID
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSID 132
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ +L+ +F +FG I SCKV+ G SKG GFV F + E A+ A+ ++NG +I K +Y
Sbjct: 133 NVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYA 192
Query: 205 AVAQRKEER 213
RK +R
Sbjct: 193 GKFVRKTDR 201
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 191
+LY+ +L I D L + FSEF ++ S ++ RD S G S G+V F +P++AS A+
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
N M+ K + V + R + R
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDAR 95
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 205/342 (59%), Gaps = 44/342 (12%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
LI ++ + V F+ +++ + + F NV+VKNL E+TTD+DLK IF E+G ITSAVVM
Sbjct: 95 LIRNQHIHVSPFVSRRQWDESRV---FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVM 151
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-Q 120
+D +GKS+ FGFVNFE A+ A A++ +NG D++E +VG+AQ+K R Q+LK F+ +
Sbjct: 152 KDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLE 211
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+K + +G NLY+KNL S+D+ KL+ELFSEFGTI SCKVM P+ ISKG GFV FS
Sbjct: 212 KIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFS 271
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
T EEAS+A+ +MNGK++ +KP+YV++AQ KEE + L QF+ + + ++ P +
Sbjct: 272 TSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQFNNLPWNVVSSTIAPSPHQH 331
Query: 241 PPGPSGLGQQFLYGQA-PPAIIPP--QAGFGYQQQLVPGMRPAGA----PMPNFFVPVVS 293
P ++ QA PP IP Q + +Q + G R + + MPNF VP
Sbjct: 332 P----------IFSQAWPPMSIPNTMQRVYNFQSYFMCGSRMSNSCPPMSMPNFMVP--- 378
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL 335
Q RP I PH PP G Y +PL
Sbjct: 379 ---QPFRP----------------TIYPHA-PPVGLHYGFPL 400
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 15/192 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNLDES ++ L +F +G + S V+RD G SK +GFV F + A
Sbjct: 32 NVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACNVR 91
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ +V S R+ + F N+Y+KNL ++ D+ LK
Sbjct: 92 NGTLIRNQHIHVSPFV--SRRQWDESRVFT-------------NVYVKNLAETTTDDDLK 136
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+F EFG ITS VM+D G S+ GFV F E A A+ +MNG ++ K L+V AQR
Sbjct: 137 MIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQR 196
Query: 210 KEERRARLQAQF 221
K+ R L+ F
Sbjct: 197 KKNRIQDLKVIF 208
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/268 (47%), Positives = 183/268 (68%), Gaps = 8/268 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +Q+RE A F N++VKNL + ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD +G+S+ FGFVNFE ++A KAV+ +NGK+ + YVG+AQK++ER+ ELK +F
Sbjct: 221 KVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E +++QG+NLY+KNL DSI+DE+LKE+FS +G ITS KVM + S SKG GFV
Sbjct: 281 EQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSH-SKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--AMGPSVPPR 236
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ + RP + P
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRR-RPSHPVLSSFQQPT 398
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQ 264
+ P P Q Y +I P Q
Sbjct: 399 SYLLPAVPQSTAQAVYYSSG--SITPMQ 424
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 128/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 95 KSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + +RE EL +A+ T N+Y+KNL ++D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRQKREAELGA---RALGFT-------NIYVKNLHANVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L++LFS+FG + S KVMRD +G S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 204 EQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F QM+
Sbjct: 264 GRAQKRAERQSELKRRFEQMK 284
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E+FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + + R
Sbjct: 72 MNFEVIKGQPIRIMWSHR 89
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 215/378 (56%), Gaps = 74/378 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F NV+VKN++ T+E+ +++F +YG +TS+
Sbjct: 215 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSS 274
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF AAKAVE LNGK+F +E YVG+AQKK ERE+EL+ +
Sbjct: 275 SLARDNEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSY 334
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-----PSGI--- 170
E A E +K+QG+NLYIKNL D +DD+KL+++FSEFG ITS KVMRD P+G
Sbjct: 335 EAARLEKANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSEGD 394
Query: 171 -----------------------------------SKGSGFVAFSTPEEASRALAEMNGK 195
SKG GFV FS P++A++A+AEMN +
Sbjct: 395 KEGKDKENKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKAVAEMNQR 454
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 255
M+ KPLYVA+AQRK+ R+++L+A + M + +GL QQ++ Q
Sbjct: 455 MVDGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AQAGLPQQYM--Q 503
Query: 256 APPAIIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP-----GGRRGAGP 309
AP P Q GF L PG R P +P V G+ GQ P GGR G
Sbjct: 504 APVYYAPGQQPGF-----LPPGGRGMPFPQGGIGMPAVQGGRPGQFPPYAQQGGRGG--- 555
Query: 310 VQQTQQPLPIMP-HQMPP 326
Q LPI P Q PP
Sbjct: 556 ---MPQQLPIYPLGQFPP 570
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 141 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 200
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 201 TDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNV 247
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + +E+ +ELF+++G +TS + RD G S+G GFV F+T A++A+ E+NG
Sbjct: 248 YVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNG 307
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 308 KEFRGQELYVGRAQKKHEREEELRKSYEAAR 338
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 373 MPITAL--STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430
+ TAL S A + Q+ +LGE+L+P ++ ++ + A K+TGMLLEMD E++HLLE
Sbjct: 667 LSATALLQSQLAATTNIHAQKQILGENLFPKIQAIQPELAGKITGMLLEMDNNELVHLLE 726
Query: 431 SPEALKAKVAEAMEVLRSVAQQQ 453
AL AKV EAM V + Q
Sbjct: 727 DEAALLAKVNEAMAVYDEYVKSQ 749
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V +++ ++ +AL E
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALEE 124
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 125 LNYTLIKGRPCRIMWSQR 142
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/259 (50%), Positives = 180/259 (69%), Gaps = 13/259 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A +V
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY--MQRMASVRAV----- 392
Query: 239 MYPPGPSGLGQQFLYGQAP 257
P P+ + L+G P
Sbjct: 393 ---PNPASTSFRLLHGSYP 408
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKRKFEQMK 284
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 26/205 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQFSQMRPVAM 229
+ ++ER A L A+ + V +
Sbjct: 171 GRFKSRKEREAELGARAKEFTNVYI 195
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 203/331 (61%), Gaps = 46/331 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK F NV+VKN+D TTDE+ K+ FG+ GT+TS
Sbjct: 198 MLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSV 257
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ R DGK K FGFVN+E+ +DA KAVE LNG +F D+E +VG+AQKK ER Q LK Q+
Sbjct: 258 ALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQY 317
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DSIDDEKL+E F+ FG ITS KVMR +G SKG GFV
Sbjct: 318 ESTRLEKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVC 377
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FS+PEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 378 FSSPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 437
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLG----QQFLYGQAPPAIIPPQAGFGY 269
P+ G +PPR +P P P + QQF G P +PPQ G
Sbjct: 438 AAAGIPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNGVPPQQFRNG--PMYGMPPQ---GA 491
Query: 270 QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
Q P R AGA F+ QQ QR
Sbjct: 492 PQGAFP--RNAGANANQFY-------QQKQR 513
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL++ ++ L F +G I S+ + D GKSK FGFV+FE A +A++AL
Sbjct: 136 NIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDAL 195
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET F N+Y+KN+ DE+ K
Sbjct: 196 NGMLLNGQEIYVAPHLTRKERDSQL--------EETKAHF--TNVYVKNIDLETTDEEFK 245
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E F + GT+TS + R P G KG GFV + +A +A+ E+NG + L+V AQ+
Sbjct: 246 EFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQK 305
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 306 KYERIQSLKKQYESTR 321
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V LD S ++ L +F G++ S V RD K+ + +VNF + + +A+E
Sbjct: 48 SLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIEK 107
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ ++ G N++IKNL ID++ L
Sbjct: 108 LNYTPIKGKLCRIMWSQRDPSLRKKGHG----------------NIFIKNLNQDIDNKAL 151
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I S K+ D +G SKG GFV F A+ A+ +NG ++ + +YVA
Sbjct: 152 FDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHL 211
Query: 209 RKEERRARLQ 218
++ER ++L+
Sbjct: 212 TRKERDSQLE 221
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 388 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+ + + EA
Sbjct: 510 QKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLENDDLFEQHFTEASAA 569
Query: 446 LRS 448
S
Sbjct: 570 YES 572
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 197/326 (60%), Gaps = 17/326 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N +V+V + K++R++ +K+ F NV+VKN+D TT E+ +K+F YG ITSA
Sbjct: 191 MLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSA 250
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD +GK + FGFVNFE+ + A KA E LN F ++ YVG+AQKK ER QELK Q+
Sbjct: 251 VLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQELKKQY 310
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E + E + K+QG+NL++KNL DS+DD+KL+E F+ FGTITS KVMRD +G SKG GFV
Sbjct: 311 ESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGFVC 370
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
FSTPEEA++A+ E N +++ KPLYVA+AQRKE RR++L Q +QMR +
Sbjct: 371 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQARNQMRYQQATAAAAA 430
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP----- 290
M P Q YG PP +P Q + G+ G P F P
Sbjct: 431 AAGM----PGQFMQPMFYGVMPPRGVPFNGPNPQQMAAMNGIPKNGVPPQQFGRPAGPMY 486
Query: 291 -VVSQGQQGQRPGGRRGAGPVQQTQQ 315
V QG QG P R G Q Q+
Sbjct: 487 GVPPQGPQGAFP--RNGNQFFHQKQR 510
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEAL 89
++V LD S T+ L +F G+++S V RD K+ + +VNF + + A+E L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N R + +Q+ ++ G N++IKNL +ID++ L
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSG----------------NVFIKNLHPAIDNKALH 145
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCK+ D +G S+ GFV F E A A+ +NG ++ +YVA
Sbjct: 146 DTFSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVS 205
Query: 210 KEERRARL 217
K++R+++L
Sbjct: 206 KKDRQSKL 213
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V +D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 507 QKQRQALGEQLYKRVSAKTQDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEAFAA 566
Query: 446 LRSVAQQQ 453
S + Q
Sbjct: 567 YDSFKKDQ 574
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 177/261 (67%), Gaps = 9/261 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE +DA KAV+ + GK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F FGTITS KVM + G SKG GFV
Sbjct: 281 EQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPPA 259
Y P PS + PPA
Sbjct: 398 PYQPPPSS----YFMAAIPPA 414
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 128/207 (61%), Gaps = 11/207 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD ++DE+LKE+F ++G S KVM D +G SKG GFV+F E+A +A+ EM GK +
Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQM 224
K ++V AQ+K ER+ L+ +F QM
Sbjct: 257 NGKSMFVGRAQKKVERQTELKRKFEQM 283
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/273 (47%), Positives = 181/273 (66%), Gaps = 12/273 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQ 264
P P P Q YG P + P Q
Sbjct: 400 FQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQ 430
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 194/301 (64%), Gaps = 36/301 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N +++FVG L ++ER++ ++K F N++VKN++ TTDE+ ++F +YG + SA
Sbjct: 191 MLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSA 250
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ + DGK K FGFV+FEN +DAAKAVE LNG +F D+E +V +AQKK ER QELK Q+
Sbjct: 251 ALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQY 310
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E + E + K+QG+NL+IKNL DSIDDEKLKE F+ +G ITS +VMR +G S+G GFV
Sbjct: 311 EASRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVC 370
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 371 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 430
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLG----QQF----LYGQAPPAIIPPQA 265
P+ G +PPR +P P P + QQF +YG PP P+
Sbjct: 431 AAAGIPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNGVPPQQFRNAPVYGGMPPQGAFPRN 489
Query: 266 G 266
G
Sbjct: 490 G 490
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D GKSK FGFV+FE+ A +A++AL
Sbjct: 129 NIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDAL 188
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E +VG + ER+ +L +E+ F N+Y+KN+ DE+
Sbjct: 189 NGMLLNGQEIFVGPHLSRKERDSQL--------EESKANF--TNIYVKNINLETTDEEFT 238
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELFS++G + S + + G KG GFV F E+A++A+ E+NG + L+V+ AQ+
Sbjct: 239 ELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQK 298
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 299 KYERMQELKKQYEASR 314
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD S ++ L IF G+++S V RD K+ + +VNF + + KA+E
Sbjct: 41 SLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEK 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K N++IKNL ID++ L
Sbjct: 101 LNYTPIKGRLCRI----MWSQRDPALR------------KKGSANIFIKNLHSDIDNKAL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I S K+ D +G SKG GFV F A A+ +NG ++ + ++V
Sbjct: 145 YDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHL 204
Query: 209 RKEERRARLQ 218
++ER ++L+
Sbjct: 205 SRKERDSQLE 214
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 384 NASPEQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
N +Q+R LGE LY V + ++ +AA K+TGM+L++ +V+ LLE+ E E
Sbjct: 495 NHFYQQKRQALGEQLYKKVSAKNVDEEAAGKITGMILDLPPQDVVSLLENDELFDQHFKE 554
Query: 442 AMEVLRS 448
A +S
Sbjct: 555 ASAAYQS 561
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/247 (51%), Positives = 173/247 (70%), Gaps = 6/247 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAV 59
ML+NDKQV+VG+F +QERE F NV+ KNL S T+E ++++F YG ITS
Sbjct: 231 MLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVY 290
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V D + K F FVNF + AAKAVE LNG+ F+ + YVG+AQKK+ERE EL+ + E
Sbjct: 291 VPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAE 350
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E + K+QG+NLY++NL D +D+E L++ FS FGT+TSC+VMRD G+S+G GFV F
Sbjct: 351 NKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCF 410
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP- 238
STPEEA++A+ EMNGKM+ KPLYV +AQRKE R+A+L+AQ ++ A G +P +P
Sbjct: 411 STPEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEAQ--RIAAAAGGLRIPGAVPG 468
Query: 239 -MYP-PG 243
+YP PG
Sbjct: 469 SLYPQPG 475
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
L + R+ K+ NVF+KNLD++ ++ L F +G I S V D +G S +GF
Sbjct: 153 LMWKNRDPTIRKSGAGNVFIKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGF 212
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
V+FEN +DA A+ +NG +D++ YVG + + ERE E F N
Sbjct: 213 VHFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQERE----------ASEETHIF--TN 260
Query: 134 LYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+Y KNL S+ +EK++ELFS +G ITS V D + + KG FV F+ PE A++A+ E+
Sbjct: 261 VYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEEL 320
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
NG+ K LYV AQ+K ER A L+ + R
Sbjct: 321 NGRDFEGKSLYVGRAQKKAEREAELRRKAENKR 353
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 78
ET A ++V +L + +L ++F G + S V RD +S + +VNF +
Sbjct: 68 ETNAPSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTRRSLGYAYVNFHS 127
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
DDA +A+E +N +Y R++ ++ ++ T+ K N++IKN
Sbjct: 128 MDDAERALETMN--------FYACP----QTRDKPMRLMWKN-RDPTIRKSGAGNVFIKN 174
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +ID++ L + FS FG I SCKV D G S G GFV F PE+A A+ ++NG ++
Sbjct: 175 LDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLN 234
Query: 199 SKPLYVAVAQRKEERRA 215
K +YV + ++ER A
Sbjct: 235 DKQVYVGYFKSRQEREA 251
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 334 PLGRNMQDFPFDMGAGSMLPV-------PVDMGAGIPRRDASVGQPMPITALS--TALAN 384
P+ N Q F + M A + PV P DM ++ + ++ S L N
Sbjct: 645 PMQLNGQQFKYTMNARNAAPVMNQERVNPEDMSQEQRQQQQARQADNATSSASLIALLTN 704
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
ASPEQQ+ +LGE LYPL+ + + A K+TGMLLEMD +EVLHL+ESP+AL K+ EA+
Sbjct: 705 ASPEQQKQILGERLYPLIYERQPGLAGKITGMLLEMDNSEVLHLIESPDALSEKIEEALA 764
Query: 445 VLRSVAQQQ 453
VLR+ A+QQ
Sbjct: 765 VLRAHAEQQ 773
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 172/247 (69%), Gaps = 3/247 (1%)
Query: 2 LINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FE
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCF 340
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
S+PEEA++A+ EMNG+++ +KPLYVA+AQRKE+R+A L ++ Q P P
Sbjct: 341 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEDRQAHLTNEYMQRMASVRAVPNPVINPY 400
Query: 240 YPPGPSG 246
P PSG
Sbjct: 401 QPAPPSG 407
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 125/196 (63%), Gaps = 11/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +A+E +
Sbjct: 100 NIFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL + V +F N+YIKN G+ +DDE+LK
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAK--------VKEFP--NVYIKNFGEDMDDERLK 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ +F QM+
Sbjct: 269 KVERQTELKRKFEQMK 284
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 63/88 (71%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+P ++ + A K+TGMLLE+D +E+LH+LESP++L
Sbjct: 544 TLTASMLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSL 603
Query: 436 KAKVAEAMEVLRSVAQQQANNPADQLAS 463
++KV EA+ VL++ ++A A A+
Sbjct: 604 RSKVDEAVAVLQAHQVKEATQKAVNSAT 631
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M + + +LY+ +L + + L E FS G I S +V RD + S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQ 60
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
P++A AL MN +I KP+ + +QR
Sbjct: 61 HPKDAEHALDTMNFDVIKGKPVRIMWSQR 89
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 167/225 (74%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV++E +DA KAVE +NG + + + +VG+AQKK+ER+ ELK +F
Sbjct: 221 KVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
D A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKELF ++G S KVM DP+G S+G GFV++ E+A++A+ +MNG +
Sbjct: 197 NFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F ++
Sbjct: 257 NGKTVFVGRAQKKNERQAELKRKFEMLK 284
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF DA +A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 173/256 (67%), Gaps = 13/256 (5%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
I K V+VG F ++ +R K + NVFVKNL D++L K+ E+G +TSAVVM+
Sbjct: 177 IEGKIVYVGPFQKRADRPQG--KDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMK 234
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G SK FGF+NF++A+ AAK VEALN K+ + Y G+AQKK+ERE L+ + E++
Sbjct: 235 DEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESK 294
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+E K+QG+NLY+KNL D +DD+ L++LF+ GTITSCKVM+D SG SKG GFV F++
Sbjct: 295 QERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSH 354
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRP----VAMGP 231
+EA+RA+ EMNGKM+ KPLYVA+AQRK+ RRA+L+A + RP MGP
Sbjct: 355 DEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANVQNRLGMGAMTRPPNPMTGMGP 414
Query: 232 SVPPRMPMYPPGPSGL 247
P MP + GP G+
Sbjct: 415 YGPGAMPFFAAGPGGM 430
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 115/208 (55%), Gaps = 14/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ A K+ N+F+KNLD+S + L F +G I S V D +G SK +GFV+FE
Sbjct: 101 HRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFE 160
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +N K+ + + YVG QK+++R Q K N+++K
Sbjct: 161 DQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ--------------GKDVYTNVFVK 206
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + D++L ++ +EFG +TS VM+D G SKG GF+ F E A++ + +N K I
Sbjct: 207 NLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEI 266
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LY AQ+K ER A L+ + + +
Sbjct: 267 GGKVLYAGRAQKKTEREAMLRQKVEESK 294
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST---PEEASRA 188
+LY+ +L + + +L ELFS G + S +V RD + S G +V +++ P+ A RA
Sbjct: 22 SLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERA 81
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERR 214
+ +N ++ KP+ + + R R
Sbjct: 82 METLNYHVLNGKPMRIMWSHRDPSAR 107
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 138/298 (46%), Positives = 192/298 (64%), Gaps = 34/298 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK F NV+VKN++ TTDE+ ++F +YG + S+
Sbjct: 186 MLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSS 245
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ + DGK K FGFV+FE +DAAKAVE LNG +F D+ +V +AQKK ER QELK Q+
Sbjct: 246 SLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQY 305
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E + E + K+QG+NL++KNL DSIDDEKLKE F+ +GTITS +VMR +G SKG GFV
Sbjct: 306 EASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVC 365
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 366 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARTQMRYQQATAAAAA 425
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLG----QQFLYGQAPPAIIPPQAGF 267
P+ G +PPR +P P P + QQF G P +PPQ GF
Sbjct: 426 AAAGIPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNGVPPQQFRNG--PGYGMPPQGGF 480
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L + F +G I S+ + D GKSK FGFV+FE+ A +A++AL
Sbjct: 124 NIFIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDAL 183
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET F N+Y+KN+ DE+
Sbjct: 184 NGMLLNGQEIYVAPHLTRKERDSQL--------EETKAHF--TNVYVKNINLETTDEEFN 233
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF+++G + S + + G KG GFV F E+A++A+ E+NG + L+V+ AQ+
Sbjct: 234 ELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQK 293
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 294 KYERMQELKKQYEASR 309
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V LD + ++ L IF G+++S V RD K+ + +VNF + + KA+E
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ ++ G N++IKNL ID++ L
Sbjct: 96 LNYTPIKGRLCRIMWSQRDPALRKKGSG----------------NIFIKNLHPDIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FG I S K+ D +G SKG GFV F A A+ +NG ++ + +YVA
Sbjct: 140 FETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHL 199
Query: 209 RKEERRARLQ---AQFSQM 224
++ER ++L+ A F+ +
Sbjct: 200 TRKERDSQLEETKAHFTNV 218
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 33/141 (23%)
Query: 318 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
P+ MPPRG + P + M P F G G +P G PR
Sbjct: 437 PMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRNGPGYGMPPQ----GGFPR---------- 482
Query: 375 ITALSTALANASPEQ-----QRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLH 427
N P Q QR LGE LY V + + +AA K+TGM+L++ EV+
Sbjct: 483 ---------NGVPNQFYQKNQRQALGEELYKKVSAKNADEEAAGKITGMILDLPPQEVVS 533
Query: 428 LLESPEALKAKVAEAMEVLRS 448
LLE+ E + EA S
Sbjct: 534 LLENDELFEQHFKEASAAYES 554
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/225 (53%), Positives = 166/225 (73%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN + DE LK++F +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGF+++E +DA KAVE +NG + + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV
Sbjct: 281 EMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE D A +
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN GD ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGDDMN 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LKELF ++G S KVM DP+G S+G GF+++ E+A++A+ +MNG + K ++V
Sbjct: 204 DERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+A L+ +F ++
Sbjct: 264 GRAQKKMERQAELKRKFEMLK 284
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF DA +A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVVKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LES E+L++KV
Sbjct: 536 SMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKV 595
Query: 440 AEAMEVLRSV-AQQQANNPADQLA 462
EA+ VL++ A++ A A LA
Sbjct: 596 EEAVAVLQAHQAKKDATQKAGNLA 619
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/375 (41%), Positives = 212/375 (56%), Gaps = 71/375 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN++ +D++ +++F YG ITS+
Sbjct: 210 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSS 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD DGKS+ FGFVN+ + A KAV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 270 SLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSY 329
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PS--------- 168
E A E K+QG+NLYIKNL D +DDEKL+ +FSEFG ITS KVMRD PS
Sbjct: 330 EAARLEKASKYQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRDAPSDGSDEEKED 389
Query: 169 ----------------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
G SKG GFV FS P++A++A+AEM+ +MI K
Sbjct: 390 EQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFVCFSNPDDATKAVAEMSQRMINGK 449
Query: 201 PLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFLYGQA 256
PLYVA+AQRK+ R+++L+A + M + P+ M PP YGQ
Sbjct: 450 PLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPP--------VFYGQQ 501
Query: 257 PPAIIPPQAGFG--YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQ 312
P + PQ G G + Q PGM AG V G+ GQ PG + G G V Q
Sbjct: 502 PGFM--PQGGRGMPFPQ---PGMGMAG----------VQGGRPGQFPGYPQQGGRGGVPQ 546
Query: 313 TQQPLPIMPHQMPPR 327
P MP Q PP+
Sbjct: 547 QMPPNMYMPGQFPPQ 561
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A +A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNI 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ +ELF +G ITS + RD G S+G GFV ++T E A +A+ E+NG
Sbjct: 243 YVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNG 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 303 KDFKGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
+ L L++A P QQ+ +LGE ++P ++ + + A K+TGMLLEMD TE++ L+E AL
Sbjct: 644 SILQQQLSSAPPAQQKQILGEVIFPKIQAINAELAGKITGMLLEMDNTELISLIEDDAAL 703
Query: 436 KAKVAEAMEVLRSVAQQQANNPAD 459
KAKV EA+ V + Q A+
Sbjct: 704 KAKVEEALAVYDEYVKSQGTEQAE 727
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEE 119
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 120 LNYTIIKGRPCRIMWSQR 137
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 195/327 (59%), Gaps = 32/327 (9%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
M+IN KQVFVG F+ ++ER E TKF NVFVKNL E TTD L +F ++G ITS V
Sbjct: 195 MVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVV 254
Query: 60 VMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+M+ D KSK FGFV +E +DA AV ALNG + + +V +AQKK+ERE ELK ++
Sbjct: 255 IMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAEREAELKQRY 314
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ E ++K+QG+NLY+KNL D+ID++K++ F+ FGTITS K+MRD G S+G GF+
Sbjct: 315 DALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFIC 374
Query: 179 FSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVA---MGPSV 233
FS+ EEA++A+ EMNG+ I KPLYVA+AQR E+RRA+L A F+Q R M V
Sbjct: 375 FSSAEEATKAVTEMNGQTIQGFPKPLYVALAQRAEDRRAQLAAHFAQQRGNMGGRMAGGV 434
Query: 234 PPRM-PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLV-PGMRPAGAPMPNFFVPV 291
M P Y GP Q F G +P G Y Q ++ G PA P+
Sbjct: 435 IAGMPPQYMAGP----QMFYAG------VPQNRGMVYPQNVMRRGAWPANVPV------- 477
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLP 318
G G R G GP Q +P
Sbjct: 478 ------GVAAGARPGFGPFMAVPQGVP 498
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 116/209 (55%), Gaps = 13/209 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ L F +G I S V+ D +G SK +GFV++E
Sbjct: 122 QRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFVHYE 180
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+ +NG + ++ +VG + ER + + E V KF N+++K
Sbjct: 181 TQEAAETAIAKVNGMVINGKQVFVGIFVPRKERVE---------LGEGVTKFT--NVFVK 229
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 196
NL + D L ++FS+FG ITS +M+ SKG GFV + E+A A+ +NG
Sbjct: 230 NLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTE 289
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ K L+VA AQ+K ER A L+ ++ +R
Sbjct: 290 LAGKTLFVARAQKKAEREAELKQRYDALR 318
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 20/186 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L +IF G + S V RD +S + +VNF A DA +A++
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDT 105
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 147
LN + + +Q+ + A++++ GL N++IKNL +ID++
Sbjct: 106 LNYSLIRGKPCRIMWSQR------------DPAVRKS-----GLGNVFIKNLDKTIDNKA 148
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D +G SKG GFV + T E A A+A++NG +I K ++V +
Sbjct: 149 LLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIF 207
Query: 208 QRKEER 213
++ER
Sbjct: 208 VPRKER 213
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/298 (44%), Positives = 187/298 (62%), Gaps = 11/298 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M++N ++V+V + K++RE+ +K F NV+VKN+D T +++ +F +YG ITS
Sbjct: 201 MMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSI 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GK + FGF+NFEN DDAAKAVE LN +F ++ YVG+AQKK ER QELK Q+
Sbjct: 261 AMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKKQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E + E + K+QG+NL++KNL DSIDDEKL+ F+ FG+ITS KVMR+ G SK GFV
Sbjct: 321 EASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVC 380
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q + +
Sbjct: 381 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQLRYQQATAAAAA 440
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIP---PQAGFGY--QQQL----VPGMRPAGAPMPNF 287
P Q YG PP +P P + G +QQ V G+ P GAP NF
Sbjct: 441 AAAGMPGQFMQPMFYGVMPPRGVPFNGPNSPMGAVPRQQFRNGPVYGVPPQGAPQGNF 498
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S + D GKSK FGFV+FE + A +AV+A+
Sbjct: 139 NIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAI 198
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG + RE YV + K +RE +E+K F N+Y+KN+ ++
Sbjct: 199 NGMMLNGREVYVAQHVSKKDRESKLEEVKANF-------------TNVYVKNVDVDTPED 245
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ LFS++G ITS + +D G +G GF+ F ++A++A+ E+N + LYV
Sbjct: 246 EFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGR 305
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ R
Sbjct: 306 AQKKYERLQELKKQYEASR 324
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 17/196 (8%)
Query: 24 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDA 82
+ T +++V LD S ++ L IF G +TS V RD K+ + +VNF + +
Sbjct: 45 VDTTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESG 104
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
A+E LN + + +Q+ ++ G N++IKNL
Sbjct: 105 RTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAG----------------NIFIKNLHPD 148
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
ID++ L + FS FG I SCK+ D +G SKG GFV F A A+ +NG M+ + +
Sbjct: 149 IDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREV 208
Query: 203 YVAVAQRKEERRARLQ 218
YVA K++R ++L+
Sbjct: 209 YVAQHVSKKDRESKLE 224
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 388 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 507 QKQRQALGEELYKRVSSKTSDEEAAGKITGMILDLPPQEVMPLLENDELFEQHFNEASAA 566
Query: 446 LRS 448
S
Sbjct: 567 YES 569
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/383 (39%), Positives = 211/383 (55%), Gaps = 81/383 (21%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F N++VKN+ TDE+ + +F +YG +TS+
Sbjct: 216 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSS 275
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAVE LNGK+F ++ YVG+AQKK ERE+EL+ +
Sbjct: 276 SLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSY 335
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E +K+QG+NLYIKNL D IDD+KL+++FSE+G ITS KVMRD
Sbjct: 336 EAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETE 395
Query: 169 -----------------------------------GISKGSGFVAFSTPEEASRALAEMN 193
G SKG GFV FS P++A++A+AEMN
Sbjct: 396 GKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMN 455
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 253
+MI KPLYVA+AQRK+ R+ +L+A + M + +GL QQ++
Sbjct: 456 QRMIEGKPLYVALAQRKDVRKNQLEASIQARNQLRMQQAA---------AQAGLPQQYM- 505
Query: 254 GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP----NFFVPVVSQGQQGQRP-----GGR 304
Q P P G Q +P P G MP +P V G+ GQ P GGR
Sbjct: 506 -QTPVYYAP-----GQQPNFMP---PGGRGMPFPQGGLGMPAVQGGRPGQFPPYAQQGGR 556
Query: 305 RGAGPVQQTQQPLPIMP-HQMPP 326
G P Q LPI P Q PP
Sbjct: 557 GGMPPQQ-----LPIYPLGQFPP 574
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 142 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 201
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +N ++++ YVG K +R+ +E+K F N+
Sbjct: 202 TDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNI 248
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ DE+ ++LF+++G +TS + RD G S+G GFV F+T E A++A+ E+NG
Sbjct: 249 YVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 309 KEFRGQDLYVGRAQKKHEREEELRKSYEAAR 339
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
S A +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD E+++LLE AL AK
Sbjct: 681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAK 740
Query: 439 VAEAMEVLRSVAQQQ 453
V EAM V + Q
Sbjct: 741 VNEAMAVYDEYVKSQ 755
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V +++ + +AL E
Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEE 125
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 126 LNYTLIKGRPCRIMWSQR 143
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N +V+V + K++R + K F N++VKN+D TTDE+ +++F +YG I SA
Sbjct: 201 MLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSA 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GK K FGFVNF + + AAKAVE LNGK+F + YVG+AQKK ER +ELK Q+
Sbjct: 261 ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E + KFQG+NL+IKNL DSIDDEKLKE F+ +GTITS +VMRD G SKG GFV
Sbjct: 321 EQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVC 380
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
FS+PEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q
Sbjct: 381 FSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 423
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 25 KTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADD 81
K + NN ++V LD + T+ L +F G I+S V RD K+ + +VN+ + +
Sbjct: 44 KVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEA 103
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
KA++ LN + + R + SER+ ++ K N++IKNL
Sbjct: 104 GKKAIQELNYAEINGRPCRI----MWSERDPAIR------------KKGSGNIFIKNLHP 147
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ID++ L E FS FG + SCKV D +G S+G GFV F +A A+ +NG ++
Sbjct: 148 AIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLE 207
Query: 202 LYVAVAQRKEERRARLQ 218
+YVA+ K++R ++L+
Sbjct: 208 VYVAMHVPKKDRISKLE 224
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 391 RTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
R LGE LY V + +AA K+TGM+L++ +V+ LL++ E + + EA+ +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 449 VAQQQ 453
++Q
Sbjct: 584 FKKEQ 588
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 164/225 (72%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ F QM+
Sbjct: 264 GRAQKKVERQTELKRTFEQMK 284
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 3 INDKQVFVGHFLRKQERETVAIKT------------KFNNVFVKNLDESTTDEDLKKIFG 50
+N KQ++VG +K ER+T +T + N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFS 315
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER
Sbjct: 316 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 111 EQELKGQFEQAM 122
+ L ++ Q M
Sbjct: 375 QAYLTNEYMQRM 386
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 64/88 (72%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 598
Query: 436 KAKVAEAMEVLRSVAQQQANNPADQLAS 463
++KV EA+ VL++ ++A A A+
Sbjct: 599 RSKVDEAVAVLQAHQAKEATQKAVNSAT 626
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 178
M + + +LY+ +L + + L E FS G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDL--ITSGSSNYAYVN 58
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F ++A AL MN +I KP+ + +QR
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQR 89
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 193/548 (35%), Positives = 272/548 (49%), Gaps = 114/548 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN+ T++D +++F +YG +TS+
Sbjct: 210 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSS 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A KAV+ LN K F ++ YVG+AQKK ERE+EL+ +
Sbjct: 270 SLARDQEGKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSY 329
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-------------KVMR 165
E A E +K+QG+NLYIKNL D +DD+KL+E+F +FG+ITS K +
Sbjct: 330 EAARLEKANKYQGVNLYIKNLDDDVDDDKLREMFKDFGSITSAKVMRETPTEGDEDKKEK 389
Query: 166 DPS-----------------------------------------GISKGSGFVAFSTPEE 184
D S G SKG GFV FS P++
Sbjct: 390 DESDKENQEEVKEEVKEESKEESKDETKEGEEDKKAEKKSDKKLGKSKGFGFVCFSNPDD 449
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERR--------ARLQAQFSQMRPVA------MG 230
A++A+AEMN +M KPLYVA+AQRK+ R+ AR Q + Q VA M
Sbjct: 450 ATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAVAGMPQQYMQ 509
Query: 231 PSV---PPRMPMYPPGPSGLGQQFLYG-----QAPPAIIP-PQAGF--GYQQQLVPGMRP 279
P V P + P Y P G G F G Q P P PQ G G QQ+ P M
Sbjct: 510 PPVYFAPGQQPGYMP-QGGRGVPFPQGAMGMPQGRPGQFPYPQQGGRGGVPQQMPPNMYG 568
Query: 280 AGAPMPNFFVPVVSQGQQG------------QRPGGRRGAGPVQQTQQPLPIMPHQMPPR 327
MP F P GQ G GGR + Q +P MP
Sbjct: 569 ----MPGQFPP--GYGQPGTPQFMAAMQAQQAALGGRGAPQGGRGGPQGMPGMP------ 616
Query: 328 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP 387
P+ NM FP + G + +++L LA+A P
Sbjct: 617 ------PMAGNMPGFPPN--NNRQGGRGGPGRNGNGPQGGRGADAAGLSSLQQQLASAPP 668
Query: 388 EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
QQ+ +LGE ++P ++ + D A K+TGMLLEM+ E+++L+E ALKAKV EA+ V
Sbjct: 669 PQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNLIEDESALKAKVDEALAVYD 728
Query: 448 SVAQQQAN 455
+ Q++
Sbjct: 729 EYVKTQSS 736
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + ++ ++LF ++G +TS + RD G S+G GFV F+T E A +A+ E+N
Sbjct: 243 YVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELNN 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 303 KDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G + S V RD +S + +VN+ D KA+E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEE 119
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 120 LNYTIIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDVAIDNKAL 163
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 164 HDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 223
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 224 PKKDR----QSKFEEMK 236
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 164/225 (72%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ F QM+
Sbjct: 264 GRAQKKVERQTELKRTFEQMK 284
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SI+++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLDKSINNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ S FG I SC V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 164/225 (72%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG + R+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 3 INDKQVFVGHFLRKQERETVAIKT------------KFNNVFVKNLDESTTDEDLKKIFG 50
+N KQ++VG +K ER+T +T + N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFS 315
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER
Sbjct: 316 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 111 EQELKGQFEQAM 122
+ L ++ Q M
Sbjct: 375 QAYLTNEYMQRM 386
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 64/88 (72%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 541 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 600
Query: 436 KAKVAEAMEVLRSVAQQQANNPADQLAS 463
++KV EA+ VL++ ++A A A+
Sbjct: 601 RSKVDEAVAVLQAHQAKEATQKAVNSAT 628
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 178
M + + +LY+ +L + + L E FS G I S +V RD I++GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDL--ITRGSSNYAYVN 58
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F P++A AL MN +I KPL + +QR
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 164/225 (72%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG + R+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 13/132 (9%)
Query: 3 INDKQVFVGHFLRKQERETVAIKT------------KFNNVFVKNLDESTTDEDLKKIFG 50
+N KQ++VG +K ER+T +T + N++VKNLD+ DE L+K F
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFS 315
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER
Sbjct: 316 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 111 EQELKGQFEQAM 122
+ L ++ Q M
Sbjct: 375 QAYLTNEYMQRM 386
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 64/88 (72%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 541 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 600
Query: 436 KAKVAEAMEVLRSVAQQQANNPADQLAS 463
++KV EA+ VL++ ++A A A+
Sbjct: 601 RSKVDEAVAVLQAHQAKEATQKAVNSAT 628
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 178
M + + +LY+ +L + + L E FS G I S +V RD I++GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDL--ITRGSSNYAYVN 58
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F P++A AL MN +I KPL + +QR
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/248 (51%), Positives = 170/248 (68%), Gaps = 6/248 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PALSV 217
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 218 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 277
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 278 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 336
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 337 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 396
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 397 YQPAPPSG 404
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 14/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+L FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDL---FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 254 NGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ ++ER A L A+
Sbjct: 171 GRFKSRKEREAELGAR 186
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 239/454 (52%), Gaps = 53/454 (11%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ DK+++VG F++K +R V + K+ N+++KNLD +++ L++ F E+G I S +
Sbjct: 176 IVADKEIYVGKFMKKTDR--VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA 233
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+D + + + FVNF+N +DA +A E +NG KF + YVG+AQKK+EREQ L+ QF++
Sbjct: 234 KDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEK 293
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+E + N+Y+KN+ ++ +E+L++ FS+ GTITS K+M D G SKG GFV FST
Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS---QMRPVAMGPSVPPRMP 238
PEEA A+ +G+M KPLYVA+AQ+KE+R+ +LQ QF + R + SV P
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNP--G 411
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ--LVPGMRPAGAPMPNFFVPVVSQGQ 296
Y P Y P ++ YQ + G+ PN
Sbjct: 412 TYAP--------LYYTNTHPGMV-------YQSYPLMWKSANMIGSSYPN---------- 446
Query: 297 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPV 354
P M P + R L RN + P + MLP+
Sbjct: 447 ---------------SEAVTYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPL 491
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
D R G+ M + E Q LLGE L+PLVE+LE A K+T
Sbjct: 492 SRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--LLGELLHPLVEKLEPQLANKIT 549
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GMLLEMD++E+L LL+SPE L +V EA EVL+S
Sbjct: 550 GMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 14/194 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE D A A++ L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+E YVGK KK++R +K + +K+ NLY+KNL + ++ L+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR---VKPE---------EKYT--NLYMKNLDADVSEDLLR 218
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E F+EFG I S + +D + + +G FV F PE+A RA +NG SK LYV AQ+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 210 KEERRARLQAQFSQ 223
K ER L+ QF +
Sbjct: 279 KAEREQLLREQFKE 292
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L S T+ L F E+ ++TS + +D G+S C+G+ NF + DA A+E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + + + + G N+++KNL +S+ + L
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG----------------NVFVKNLPESVTNAVL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV G S+G GFV F + A A+ +N ++ K +YV
Sbjct: 129 QDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM 188
Query: 209 RKEER 213
+K +R
Sbjct: 189 KKTDR 193
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IND+ V+VG F+ +R++ + K +FNN++VKN TTDE L+ +F E+G I S V
Sbjct: 152 MMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCV 211
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
++ +GKSK FGFV F + D A +AV ++GK+ + R Y +AQ+K ER++ELK + E+
Sbjct: 212 EKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQEELKQRLEK 271
Query: 121 AMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E + K+ G+NLY+KNL D+IDDE+LKE FS +G ITS KVM D +G SKG GFV F
Sbjct: 272 QRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCF 331
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+ PE+A+RA+ EMN ++ SKPLYVA+AQRKE+RRA+L A+ Q
Sbjct: 332 TQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRAKLIAEHQQ 375
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 126/232 (54%), Gaps = 14/232 (6%)
Query: 5 DKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ + F+G +R +R+ K+ N+F+KNLD++ + L F G I S +
Sbjct: 63 NYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKIAM 122
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G SK +GFV+FE + A +A+E +NG +DR YVGK S+R
Sbjct: 123 DEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDR------------ 170
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
K K + N+Y+KN DEKL+++FSEFG I SC V ++P G SKG GFV F P
Sbjct: 171 KSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDP 230
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP 234
+ A +A+ M+GK I + LY + AQRKEER+ L+ + + R + VP
Sbjct: 231 DHAEQAVRVMHGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVP 282
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L T+ L F E GT+ SA + RD S +G+VNFE DA +A+E
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + F R + +Q+ + KG N++IKNL +ID ++
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKG----------------NIFIKNLDKTIDQKQ 104
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
L + FS G I SCK+ D G SKG GFV F E A RA+ ++NG MI + +YV
Sbjct: 105 LYDTFSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYV 161
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVE 403
F+ A ++ P +P A +G P+T +ALA S E Q+ LGE L+PLV+
Sbjct: 577 FNQTARNVSTQPTTAPGNMPSVLAPLGDQSPLTI--SALAQLSEEDQKRTLGERLFPLVQ 634
Query: 404 QLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
++ A K+TGMLL +D EV+HLLES E+L+AK+ E + VL++
Sbjct: 635 EMYPTLAQKLTGMLLGVDNAEVIHLLESKESLRAKLEEGISVLKT 679
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + L FSE GT+ S ++ RD + S G G+V F P++A RAL
Sbjct: 2 SLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALEN 61
Query: 192 MNGKMIVSKPLYVAVAQRKEERR 214
+N + + +P+ + +QR R
Sbjct: 62 LNYESFMGRPIRIMWSQRDPSLR 84
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 165/225 (73%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 170/248 (68%), Gaps = 3/248 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G S+G GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMME-GGRSRGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG ++ +KPLYV++A RKEER+A L ++ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGIIVATKPLYVSLAHRKEERQAYLTNEYMQRMAGVRAVPNPVINP 399
Query: 239 MYPPGPSG 246
P PSG
Sbjct: 400 YQPAPPSG 407
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKRKFEQMK 284
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+PL+E + A K+TGMLLE+D +E+LH+LESPE+L
Sbjct: 544 TLTASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDNSELLHMLESPESL 603
Query: 436 KAKVAEAMEVLRSVAQQQANNPADQLAS 463
+KV EA+ VL++ ++A A A+
Sbjct: 604 GSKVDEAVAVLQAHQAKEATQKAVNSAT 631
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 165/225 (73%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL + L+ +F ++G + S
Sbjct: 136 MLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVDERGLQDLFSQFGKMLSV 195
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+ ER+ ELK +F
Sbjct: 196 KVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRAQKRLERQNELKRRF 255
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++++QG+NLY+KNL DSI+DEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 256 EQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 314
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 315 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 359
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE D A +
Sbjct: 70 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHDAAQR 128
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL + M+ T N+Y+KNL +D
Sbjct: 129 AISTMNGMLLNDRKVFVGHFKSRREREAELGA---RVMEFT-------NIYVKNLQVDVD 178
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 179 ERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYV 238
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 239 GRAQKRLERQNELKRRFEQMK 259
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 26/181 (14%)
Query: 45 LKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103
L + F G I S V RD +S C+ ++NF+ DA +A++ +N
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNF------------ 49
Query: 104 AQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSIDDEKLKELFSEFGTIT 159
+ +KGQ + M D + G+ N++IKNL DSID++ L + FS FG I
Sbjct: 50 --------EVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 101
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
SCKV+ D G S+G GFV F T + A RA++ MNG ++ + ++V + + ER A L A
Sbjct: 102 SCKVVCDEHG-SRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGA 160
Query: 220 Q 220
+
Sbjct: 161 R 161
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 503 GERLYPLIRDVHHQLAGKITGMLLEIDNSELLLMLESPESLHAKIEEAVAVLQA 556
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/305 (44%), Positives = 192/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+EN +DA KAVEALN + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G AP +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQINPMGGMPKNGMPPQF--GNAPVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DEK +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEKFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+F++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 EMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ + ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA++ LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIDQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLE+ E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 210/387 (54%), Gaps = 81/387 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N+++KN+ TD++ + +F +G +TS+
Sbjct: 215 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSS 274
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 275 SLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSY 334
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E +K+QG+NLYIKNL D +DDEKL++LF++FG ITS KVMRD +
Sbjct: 335 EAARMEKANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRDNATDSGNEDEGS 394
Query: 169 ------------------------------------------GISKGSGFVAFSTPEEAS 186
G SKG GFV FS P++A+
Sbjct: 395 SEEKETEAKKDEEEEEKPEEAKTDDKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDAT 454
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPP 242
+A+AEMN +M+ KPLYVA+AQRK+ R+++L+A + M + P+ M PP
Sbjct: 455 KAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPP 514
Query: 243 GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG 302
GQQ ++ PQ G R P P +P V G+ GQ PG
Sbjct: 515 VFYAAGQQPVF---------PQGG-----------RGMAFPQPGMAMPAVQGGRPGQFPG 554
Query: 303 G---RRGAGPVQQTQQPLPIMPHQMPP 326
G + G G + Q P+ +P Q PP
Sbjct: 555 GYPQQGGRGGLPQQMPPVYGIPGQFPP 581
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 141 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 200
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 201 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNI 247
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D++ ++LF+ FG +TS + RD G S+G GFV F+T E A++A+ ++NG
Sbjct: 248 YIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNG 307
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 308 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 338
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 125 LNYTLIKGRPCRIMWSQR 142
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 210/367 (57%), Gaps = 66/367 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F NV+VKN+ TDE+ +++F +YG +TS+
Sbjct: 265 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSS 324
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ R +GKS+ FGFVNF + A+KAVE LNGK F +E YVG+AQKK ERE+EL+ +
Sbjct: 325 SLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSY 384
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A +E +K+QG+NLYIKNLGD +DD+KL+++FSE+G ITS KVMRD
Sbjct: 385 EAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRDSVVESAAEDEKD 444
Query: 169 ----------------------------GISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
G SKG GFV FS P++A++A+ EMN +MI +K
Sbjct: 445 KENKKEDEEEKEGETAEKKAETKEKRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMIDNK 504
Query: 201 PLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 255
PLYVA+AQRK+ R+++L+A +M+ A +P + M P GQQ
Sbjct: 505 PLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAQAGIPQQF-MQQPVYYAPGQQ----- 558
Query: 256 APPAIIPPQAGFGYQ-QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQ 314
P +PP G G Q G+ P G P + P GQQ GGR G P
Sbjct: 559 --PGFMPPAGGRGMPFAQGAMGIPPQGG-RPGQYPPYA--GQQ----GGRGGMPP----- 604
Query: 315 QPLPIMP 321
Q +PI P
Sbjct: 605 QQMPIYP 611
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 191 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 250
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 251 TDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNV 297
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ +ELF+++G +TS + R G S+G GFV F+T E AS+A+ E+NG
Sbjct: 298 YVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNG 357
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 358 KDFRGQELYVGRAQKKHEREEELRRSYEAAR 388
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 378 LSTALANA-SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 436
L T LA A SP QQ+ +LGESL+P ++ ++ + A K+TGMLLEM+ E+++L+E AL
Sbjct: 708 LHTQLAAAASPAQQKQILGESLFPKIQAIQPELAGKITGMLLEMENQELINLIEDEAALN 767
Query: 437 AKVAEAMEVLRSVAQQQA 454
AKV EAM V + QA
Sbjct: 768 AKVGEAMNVYDEYVKTQA 785
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++ + +AL +
Sbjct: 115 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKALED 174
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 175 LNYTLIKGRPCRIMWSQR 192
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 174/231 (75%), Gaps = 2/231 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VG+ + ++ER++ +K +F N++VKN D T+E+ +F ++G++TSA
Sbjct: 195 MLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSA 254
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD +G+S+ FGFVNFE D+A KAVE L+ F ++ +V +AQKK+EREQEL+ +
Sbjct: 255 VIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFKGKKLFVSRAQKKAEREQELRQSY 314
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E + KFQG+NLYIKNL D +DD++L+ F FG+ITS KVMRD G SKG GFV
Sbjct: 315 EQAKMEKMSKFQGVNLYIKNLEDDLDDDRLRTEFEPFGSITSAKVMRDEKGTSKGFGFVC 374
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
FS+P+EA++A+AEMN KMI +KPLYV++AQR++ RR +L++Q +Q + M
Sbjct: 375 FSSPDEATKAVAEMNNKMIGTKPLYVSLAQRRDVRRQQLESQIAQRNQIRM 425
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE ++ L F +G + S V D G+SK +GFV++E
Sbjct: 121 QRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYE 180
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG +D++ YVG + ER+ +E+K QF N+
Sbjct: 181 TAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQF-------------TNI 227
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN + +E+ LF +FG++TS + RD G S+G GFV F +EA +A+ ++
Sbjct: 228 YVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHD 287
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K L+V+ AQ+K ER L+ + Q +
Sbjct: 288 LDFKGKKLFVSRAQKKAEREQELRQSYEQAK 318
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 28/236 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 45 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 104
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL + ID++ L
Sbjct: 105 LNYSSIKGRACRIMWSQR------------DPALRKTG---QG-NIFIKNLDEQIDNKAL 148
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHI 208
Query: 209 RKEERRARLQ---AQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 261
++ER+++L+ AQF+ + P V M L QQF G A+I
Sbjct: 209 SRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFM------ALFQQF--GSVTSAVI 256
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 177/264 (67%), Gaps = 14/264 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK V+VGH + ++ER+ +++ + N++VK L ++ + ++F +YG +TSA
Sbjct: 130 MLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKYGQVTSA 189
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D DGKSK FGFVNF + + AAKA+ L+ + + YV +AQKK ERE+ELK +
Sbjct: 190 VLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGEREEELKKSY 249
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ + K+QG+NLY+KNL D +D+EK+ F+ FGTITS K+MRD G SKG GFV
Sbjct: 250 EQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGASKGFGFVC 309
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS---QMRPVAMGPS-VP 234
FS+P+EA++A+ E+NGKM KPLYV++AQRK+ R+ +L+AQ + Q+R + S +P
Sbjct: 310 FSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQRNQIRSQQLAASGIP 369
Query: 235 PRMP--------MYPPGPSGLGQQ 250
P MP MY PGP G QQ
Sbjct: 370 PNMPPYGMPPNQMYYPGPGGYPQQ 393
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 114/208 (54%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDES ++ L F +G I S V D +G SK +GFV++E
Sbjct: 56 QRDPALRKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYE 115
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++A+NG +D+ YVG + ER+ ++ E + NLY+K
Sbjct: 116 GGEAAEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKI--------DEVRSNY--TNLYVK 165
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
L I + + ELF+++G +TS + D G SKG GFV F+ E A++AL E++
Sbjct: 166 GLAPEISEAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEH 225
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV+ AQ+K ER L+ + Q +
Sbjct: 226 KGQTLYVSRAQKKGEREEELKKSYEQQK 253
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 53 GTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 111
G++ S V RD +S + +VNF NA D +A+E LN + + +Q+
Sbjct: 3 GSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQR----- 57
Query: 112 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 171
+ A+++T N++IKNL +SID++ L + F+ FG I SCKV D +G+S
Sbjct: 58 -------DPALRKTSLG----NIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLS 106
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217
KG GFV + E A A+ +NG ++ K +YV + ER+A++
Sbjct: 107 KGYGFVHYEGGEAAEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKI 152
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/225 (52%), Positives = 162/225 (72%), Gaps = 3/225 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF +ERE A F N++VKNL ++ L+ +F E+G + S
Sbjct: 161 MLLNDRKVFVGHFKSHREREAELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV+ +NGK+ ++ YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ ++QG+NLY+KNL DSI DEKL+ +FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG ++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNL++S + L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + ERE EL QA+ T N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSHREREAELGA---QALAFT-------NIYVKNLHVDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LF EFG + S KVMRD SG S+G GFV F EEA +A+ MNGK + + LYV
Sbjct: 204 EQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRGERQNELKRRFEQMK 284
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAV 86
++++V +L T+ L + F G I S V RD +S + ++NF+ DA +A+
Sbjct: 10 LSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ +N + + + +Q+ + G N++IKNL DSID +
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NVFIKNLEDSIDSK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV D G S+G GFV F T E A +A++ MNG ++ + ++V
Sbjct: 114 ALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGH 172
Query: 207 AQRKEERRARLQAQ 220
+ ER A L AQ
Sbjct: 173 FKSHREREAELGAQ 186
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
G+P V P+TA + LA A +Q+ ++GE LY L+ ++ A K+TGMLLE+
Sbjct: 508 GVPEPAVHVPGQEPLTA--SMLAAAPLHEQKQMIGERLYRLIPEVYAALAGKITGMLLEI 565
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRS 448
D +E+L +LESPE+L+AKV EA+ VL++
Sbjct: 566 DNSELLLMLESPESLQAKVEEAVAVLQA 593
>gi|93359570|gb|ABF13311.1| poly-A binding protein, partial [Phaseolus vulgaris]
Length = 172
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/172 (79%), Positives = 151/172 (87%), Gaps = 4/172 (2%)
Query: 157 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
TITSCKVMRDP+G+S+GSGFVAFSTPEEASRALAEMNGKM+VSKPLYV +AQRKE+RRAR
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 217 LQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPG 276
LQAQF+QMRPV M PSV PR+PMYPPG G+GQQ Y Q PPAIIP Q GFGYQQQLVPG
Sbjct: 61 LQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFY-QGPPAIIPSQPGFGYQQQLVPG 119
Query: 277 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRG 328
MRP AP+PNFFVP+V QGQQGQRPGGRR VQQ+QQP+P+MP QM PRG
Sbjct: 120 MRPGAAPVPNFFVPMVQQGQQGQRPGGRRA---VQQSQQPVPMMPQQMLPRG 168
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
TITS VMRD +G S+ GFV F ++A++A+ +NGK + YV AQ+K +R
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 114 LKGQFEQ 120
L+ QF Q
Sbjct: 61 LQAQFAQ 67
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 249/484 (51%), Gaps = 85/484 (17%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVG + K +R K F NVF+KNL T+ + +++ ++G +S
Sbjct: 197 MLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSV 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ + +GK FGFV+++ D A KA++ L+ +F + + G+A+KK ER EL+ Q+
Sbjct: 257 HLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQY 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E + E ++K+QG+NLYIKNL D+IDD+KL+ F+ GTITS KVM D +G SKG GFV
Sbjct: 317 EASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
+S+PEEA++A+ EMN +++ KPLYV +AQRK+ RR++LQ Q +QMR
Sbjct: 377 YSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMR---------- 426
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM--PNFFVPVVS 293
QQQ G P G M P F P
Sbjct: 427 ---------------------------------LQQQAAAGGLP-GQYMGNPGVFYP--- 449
Query: 294 QGQQGQRPGGRRG---AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP---FDMG 347
GQ G P GR G Q +P +Q PPRG P G NM P + G
Sbjct: 450 -GQPGFMPPGRGGMPFGANPQMMMRPPMPPQNQFPPRG----VPGGPNMYGAPPQGYQQG 504
Query: 348 A----GSML---------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
G M P P G PRR G+ ++S AL NA EQ + L+
Sbjct: 505 GFPPQGPMRGGQPPRSGQPGPQGQFRGAPRRKD--GESRVADSISNALENAPEEQHKQLV 562
Query: 395 GESLYPLV---EQLERDA--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
GE+LYP V + ++ +A A K+TGMLLEM E+L +++ E L+A++ +A+
Sbjct: 563 GEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQINDAITAYNEY 622
Query: 450 AQQQ 453
Q
Sbjct: 623 LNSQ 626
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+++KNLD + ++ L F +G I S + D G S+ FGFV++E
Sbjct: 123 QRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+A+ A A++ +NG +D++ +VG KS+R Q + Q K N++IK
Sbjct: 183 SAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQ----------KNSFTNVFIK 232
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NLG I + + +EL ++FG +S + + G G GFV + + A +A+ ++
Sbjct: 233 NLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEF 292
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
L+ A++K ER L+ Q+ R
Sbjct: 293 KGNKLFAGRAKKKYERADELRKQYEASR 320
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G +TS V RD +S + +VNF N D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T N+YIKNL +ID++ L
Sbjct: 107 LNYSPIKERPCRIMWSQR------------DPALRKT----GAGNIYIKNLDPAIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D G S+G GFV + + E A A+ +NG ++ K ++V
Sbjct: 151 HDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHV 210
Query: 209 RKEERRARLQAQ 220
K +R + Q
Sbjct: 211 PKSDRMQSFEEQ 222
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 108 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167
+E E + + E+ KE D+ +LY+ L S+ + L E+F+ G +TS +V RD
Sbjct: 24 AEGEAKTESSEEKGSKE--DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDA 81
Query: 168 -SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ S G +V F + RAL E+N I +P + +QR
Sbjct: 82 ITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQR 124
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/277 (50%), Positives = 185/277 (66%), Gaps = 23/277 (8%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN + DE LK++F +YGTITS
Sbjct: 153 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSH 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKS+ FGFV FEN + A AV+ LNGK+ + + YVG+AQKK+ER+ ELK +
Sbjct: 213 RVMIK-DGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRR 271
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ E + ++QG+NLY+KNL DSIDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 272 FEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGRSKGFGFV 330
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
FS EEA++A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ Q MR MG
Sbjct: 331 CFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQHMG--- 387
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ 270
++ PG +G G P + PQ F Q
Sbjct: 388 ----QIFQPGGNG-------GYYVPTLPQPQRFFSKQ 413
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 124/202 (61%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE + A
Sbjct: 86 KSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANT 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
++E +NG + ++ YVG+ + ERE+EL E+A T N+Y+KN GD ++
Sbjct: 146 SIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLFT-------NVYVKNFGDELN 195
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLY 203
DE LKE+F ++GTITS +VM G S+G GFVAF PE A A+ E+NGK + K LY
Sbjct: 196 DETLKEMFEKYGTITSHRVM-IKDGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILY 254
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q++
Sbjct: 255 VGRAQKKNERQMELKRRFEQLK 276
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 81/155 (52%), Gaps = 19/155 (12%)
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVD 357
GQ+ GG Q P+ P + A Y +NM++ P A M PV
Sbjct: 489 GQQAGG---------NMQARPVAPQMAANQARAANYKYTQNMRNPPAQ--AVPMAAQPVA 537
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
A V P+TA + LA A P +Q+ +LGE L+PL+E L A K+TGML
Sbjct: 538 QQA------VHVKGQEPLTA--SMLAAAQPAEQKQMLGERLFPLIEPLYPTIAGKITGML 589
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
LE+D +E++H+LE E+LKAKV EA+ VL + Q+
Sbjct: 590 LEIDNSELVHMLEHSESLKAKVDEAVAVLHAHQQK 624
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 215/379 (56%), Gaps = 73/379 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F NV+VKN+ TDED +++F ++G +TS+
Sbjct: 210 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSS 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GK++ FGFVNF + A KAVE LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 270 SLARDQEGKTRGFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSY 329
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------------ 166
E A E +K+QG+NLYIKNL D +DDEKL+++F+EFG ITS KVMRD
Sbjct: 330 EAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQ 389
Query: 167 ------------------------------PSGISKGSGFVAFSTPEEASRALAEMNGKM 196
G SKG GFV FS P++A++A+AEMN +M
Sbjct: 390 EKDKENQKEGEKEGESAEGAEKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRM 449
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQFL 252
I +KPLYVA+AQRK+ R+++L+A + M + P+ M PP GQQ
Sbjct: 450 INNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPPVFYAPGQQ-- 507
Query: 253 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 312
P I PQ G G +P +P G PMPN V G+ GQ PG + G +
Sbjct: 508 -----PGFI-PQGGRG-----IPFPQP-GMPMPN-----VQGGRPGQFPGYPQQGG--RN 548
Query: 313 TQQPLP----IMPHQMPPR 327
Q LP +P Q PP+
Sbjct: 549 MPQGLPPNMYSIPGQFPPQ 567
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNV 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE ++LF +FG +TS + RD G ++G GFV F+T E A +A+ E+NG
Sbjct: 243 YVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELNG 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 303 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
+LGE ++P ++ + + A K+TGMLLEMD +E+++L+E ALKAKV EA+ V +
Sbjct: 672 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 731
Query: 453 QA 454
QA
Sbjct: 732 QA 733
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 120 LNYTLIKGRPCRIMWSQR 137
>gi|34015127|gb|AAQ56324.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
Length = 266
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 159/213 (74%), Gaps = 8/213 (3%)
Query: 263 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 321
P GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G +QQ P+P+
Sbjct: 59 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 115
Query: 322 HQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 379
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI AL+
Sbjct: 116 QQMLPRGSRGGYRYASGRGMPDNAFR-GVGGLVPSPYEMGR-MPLSDAGAPPQVPIGALA 173
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKAKV
Sbjct: 174 SALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKV 233
Query: 440 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
AEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 234 AEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 266
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/353 (41%), Positives = 199/353 (56%), Gaps = 76/353 (21%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+ TDE+ +++F ++G +TSA
Sbjct: 213 MLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSA 272
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD D GKS+ FGFVNF N + AA AV+ LNGK F ++ YVG+AQKK ERE+EL+
Sbjct: 273 SLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKS 332
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--------- 168
+E A E K+QG+NLY+KNL D +DDEKL+ELF+ FG ITS KVMRD +
Sbjct: 333 YEAARIEKASKYQGVNLYVKNLDDDVDDEKLRELFTPFGAITSAKVMRDSAAETAEAEKK 392
Query: 169 -----------------------------------GISKGSGFVAFSTPEEASRALAEMN 193
G SKG GFV FS P+EA++A+A+MN
Sbjct: 393 EEEKNKENKKEGDAEEGEKADGEKKEAPKSEKRTVGKSKGFGFVCFSNPDEATKAIADMN 452
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFS-----QMRPVAMGPSVPPRM---PM-YPPG- 243
M+ KPLYVA+AQRK+ R+ +L+A +M+ A +PP+ PM YPPG
Sbjct: 453 QNMVNGKPLYVALAQRKDVRKGQLEASIQARNQIRMQQAAAQAGMPPQYMQAPMFYPPGQ 512
Query: 244 -----PSGLGQQFLY-----------GQAP---PAIIPPQAGFGYQQQLVPGM 277
P+ G+ Y G P P PPQ G G QQ+ P M
Sbjct: 513 QPGFMPAAGGRGMPYPPQAGMPMPAQGGRPAQFPGGFPPQGGRGGPQQMPPNM 565
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 139 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYE 198
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 199 TDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANF-------------TNI 245
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ DE+ +ELF +FG +TS + RD +G S+G GFV F E A+ A+ E+N
Sbjct: 246 YVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELN 305
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
GK + LYV AQ+K ER L+ + R
Sbjct: 306 GKDFKGQDLYVGRAQKKHEREEELRKSYEAAR 337
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 63 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALEE 122
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 123 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 166
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D SG SKG GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 167 HDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHI 226
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 227 PKKDR----QSKFEEMK 239
>gi|222640326|gb|EEE68458.1| hypothetical protein OsJ_26852 [Oryza sativa Japonica Group]
Length = 252
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 159/213 (74%), Gaps = 8/213 (3%)
Query: 263 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 321
P GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G +QQ P+P+
Sbjct: 45 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 101
Query: 322 HQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 379
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI AL+
Sbjct: 102 QQMLPRGSRGGYRYASGRGMPDNAFR-GVGGLVPSPYEMGR-MPLSDAGAPPQVPIGALA 159
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKAKV
Sbjct: 160 SALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKV 219
Query: 440 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
AEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 220 AEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 252
>gi|218200922|gb|EEC83349.1| hypothetical protein OsI_28748 [Oryza sativa Indica Group]
Length = 252
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 159/213 (74%), Gaps = 8/213 (3%)
Query: 263 PQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR-GAGPVQQTQQPLPIMP 321
P GFG+QQ L+PGMRP+ P+PNF +P+V QGQQ QRP GRR G G +QQ P+P+
Sbjct: 45 PMPGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTGGIQQ---PMPMGH 101
Query: 322 HQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 379
QM PRG YRY GR M D F G G ++P P +MG +P DA +PI AL+
Sbjct: 102 QQMLPRGSRGGYRYASGRGMPDNAFR-GVGGLVPSPYEMGR-MPLSDAGAPPQVPIGALA 159
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ALAN+ P+QQR +LGESLYPLV+QLE D AAKVTGMLLEMDQTEVLHL+ESP+ALKAKV
Sbjct: 160 SALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKV 219
Query: 440 AEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
AEAMEVLR+ QQQAN P DQLA+L+L++ +VS
Sbjct: 220 AEAMEVLRNAQQQQANTPTDQLAALTLSDGVVS 252
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 191/305 (62%), Gaps = 23/305 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I D+ V+VG F+ K ER++ A K KFNN++VKN T +E LK++F E+G I SA V
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACV 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV + + D A AV ++GK+ + R Y +AQ+K ER++ELK + E+
Sbjct: 224 MKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEK 283
Query: 121 AMKETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
E + +NLY+KNL D+IDD++L+E FS G+ITS KVM+D + SKG GFV F
Sbjct: 284 QRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCF 343
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL----QAQFSQMR-PVA-MGPSV 233
+ PE+A+RA+ +MNG +I SKPLYVA+AQRKE+RRA+L Q + +Q R PVA M P+V
Sbjct: 344 ANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRLAQYRAPVASMIPAV 403
Query: 234 PPRMP-------------MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPA 280
P Y P + L Q + +A A IP Q G + V G P
Sbjct: 404 PGHAAPHNYFPPAFQAQRFYHPSSAVLSSQPRWNRA--AGIPAQIGAIPNRPPVAGYYP- 460
Query: 281 GAPMP 285
GAP P
Sbjct: 461 GAPNP 465
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++L F +G I S ++ D +G+SK +GFV+FE + A +A+E +
Sbjct: 102 NIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N DR YVGK K+ER+ + + K + NLY+KN D+EKLK
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQAR------------KVKFNNLYVKNFPPETDNEKLK 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+FSEFG I S VM+D G SKG GFV + P+ A A+ M+GK I + LY A AQR
Sbjct: 210 EMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQR 269
Query: 210 KEERRARLQAQFSQMR 225
KEER+ L+ + + R
Sbjct: 270 KEERQEELKQKIEKQR 285
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 18/198 (9%)
Query: 21 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 78
TVA + N+ ++V +L +D L+ F E G + SA V RD +S +G+VNFE+
Sbjct: 4 TVASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFED 63
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
A +A+E LN + R + +Q+ + KG N++IKN
Sbjct: 64 PKHAEQALEVLNYEPLMGRPIRIMWSQRDPSLRKSGKG----------------NIFIKN 107
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L SI+ ++L + FS FG I SCK++ D +G SKG GFV F E A RA+ ++N +I
Sbjct: 108 LDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIR 167
Query: 199 SKPLYVAVAQRKEERRAR 216
+ +YV K ER+++
Sbjct: 168 DRVVYVGKFIPKTERKSQ 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ALA S Q+ LGE L+P ++ + A K+TGMLL +D EV++LLES + L+AK
Sbjct: 621 SALAQLSEVDQKRALGEHLFPRIQTMYPTLARKLTGMLLGVDNAEVINLLESDDLLRAKC 680
Query: 440 AEAMEVLRSVAQQQ 453
E + VL S QQ
Sbjct: 681 EEGISVLESSQNQQ 694
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 211/388 (54%), Gaps = 85/388 (21%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R + +K F N++VKN+D TTD++ +++F +YG ITSA
Sbjct: 206 MLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSA 265
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D GK + FGFVNF +DAAKAV+ LN F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 266 SLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQY 325
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E +E K+QG+NLY+KNL D IDDE+L+++F +G ITS KVMRD +
Sbjct: 326 EAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAITSAKVMRDTTPLDKVEGAEK 385
Query: 169 ------------------------------------------GISKGSGFVAFSTPEEAS 186
G SKG GFV FS P+EA+
Sbjct: 386 EDGEKKESESSAEDKEEEKKDDADELAKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEAT 445
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 246
+A+ E+N KMI SKPLYVA+AQRKE R+++L+A V M G
Sbjct: 446 KAVTELNQKMIHSKPLYVALAQRKEVRKSQLEASIQARNQVRMQQQAT---------AGG 496
Query: 247 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG---- 302
L QQF+ APP + G Q ++PG R MP FV + QG QGQR G
Sbjct: 497 LPQQFM---APPQMF---IGPNGQPMMIPGGR---GQMP--FVQGMPQG-QGQRGGFPGM 544
Query: 303 ---GRRGAGPVQQTQQPLPIMPHQMPPR 327
G RG GP Q +P MP+ PP+
Sbjct: 545 PQQGGRG-GPAALPQ--MPQMPYGFPPQ 569
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 114/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+D A +A++++NG ++++ +VG K +R +E+K F N+
Sbjct: 192 TSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF-------------TNI 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ +ELF ++G ITS + D G +G GFV F E+A++A+ E+N
Sbjct: 239 YVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELND 298
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 299 LDFKGQKLYVGRAQKKHEREEELRKQYEAQR 329
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V +++ + RAL E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEE 115
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 116 LNYTLIKGKPCRIMWSQR 133
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 172/245 (70%), Gaps = 7/245 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGH + ++ER++ + +F N++VKNLD T+ + + +F E+G ITSA
Sbjct: 304 MLLNDKQVFVGHHISRKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSA 363
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ D +GKS+ FGFVN+EN ++A +AV ++ K+ + +VG+AQKKSER+ EL
Sbjct: 364 VLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSH 423
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A +E +K+ G+NLY+KNL D +DD+KL+ F FGTITSCKVMR+ ISKG GFV
Sbjct: 424 EAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVC 483
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTP+EA++A+ EMN KMI +KPLYV++AQR++ RR +L+ Q Q + M + P
Sbjct: 484 FSTPDEATKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQLEGQIMQRNQMRM-----QQAP 538
Query: 239 MYPPG 243
M PG
Sbjct: 539 MMGPG 543
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 10/201 (4%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 76
+ R+ KT N+F+KNLDE+ ++ L F +G + S V D GKS+ +G+V++
Sbjct: 229 ERRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHY 288
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
E A+ A A++A+N +D++ +VG + ER+ Q ++A + Q N+Y+
Sbjct: 289 ETAESAEAAIKAVNRMLLNDKQVFVGHHISRKERQS----QIDEA------RAQFTNIYV 338
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL I + + + +F EFG ITS + D G S+G GFV + EEA RA+ EM+ K
Sbjct: 339 KNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKE 398
Query: 197 IVSKPLYVAVAQRKEERRARL 217
I K L+V AQ+K ER++ L
Sbjct: 399 IKGKVLFVGRAQKKSERQSEL 419
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 101/199 (50%), Gaps = 41/199 (20%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L +IF G + S V RD +S + +VN+ NA D
Sbjct: 175 SLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD------- 227
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
G++ D A+++T QG N++IKNL ++ID++ L
Sbjct: 228 --GERRDP------------------------ALRKT---GQG-NIFIKNLDEAIDNKAL 257
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D +G S+G G+V + T E A A+ +N ++ K ++V
Sbjct: 258 HDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHI 317
Query: 209 RKEERRARL---QAQFSQM 224
++ER++++ +AQF+ +
Sbjct: 318 SRKERQSQIDEARAQFTNI 336
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 184/293 (62%), Gaps = 21/293 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV +E + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ D G+NLY+KNL D+IDDE+L++ FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
F +P EA+ A+ E+NG++I SKPLYVA+AQRKEER+A L +Q+ MR + G +
Sbjct: 333 CFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLG 389
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ--------QLVPGMRPAGA 282
M+ P +G G P I P Q FG Q + P +RPA
Sbjct: 390 QMFQPNTTG-------GFFVPTIPPSQRFFGPQMTTQMRNAPRWAPQVRPAAT 435
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD+ ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVA+ T E A A+ +NGK M SK LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 57/70 (81%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA+P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 562 IASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDKEALKA 621
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 622 KVEEAVAVLQ 631
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL ID++ +
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKGIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ +NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 184/293 (62%), Gaps = 21/293 (7%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV +E + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ D G+NLY+KNL D+IDDE+L++ FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
F +P EA+ A+ E+NG++I SKPLYVA+AQRKEER+A L +Q+ MR + G +
Sbjct: 333 CFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLG 389
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQ--------QLVPGMRPAGA 282
M+ P +G G P I P Q FG Q + P +RPA
Sbjct: 390 QMFQPNTTG-------GFFVPTIPPSQRFFGPQMTTQMRNAPRWAPQVRPAAT 435
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD+ ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVA+ T E A A+ +NGK M SK LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 57/70 (81%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA+P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 562 IASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDKEALKA 621
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 622 KVEEAVAVLQ 631
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL ID++ +
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKGIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ +NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 160/240 (66%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ DKQ++VG F+RK +R K+ N+++KNLD T+ L++ F +G I S V+ +
Sbjct: 165 VGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISK 224
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D +G SK F FVN+EN DDA KA+EA+NG KF + YV +AQKK+EREQ L QFE+
Sbjct: 225 DDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKR 284
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
KE + K+Q NLY+KN+ D + D++L++LFS GTITS KVMRD GISKG GFV FS P
Sbjct: 285 KEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNP 344
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 242
EEA++A+ NG M KPLY+A+AQRK +R+ +L ++ + G S P +PP
Sbjct: 345 EEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPP 404
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 116/203 (57%), Gaps = 12/203 (5%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 82
A K+ NVFVKNL S + L +F +YG I S+ V+ GDGKSK +GFV FE+ + A
Sbjct: 94 ARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESA 153
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
A+E LNG D++ YVGK +K +R L G K T NLYIKNL
Sbjct: 154 NNAIEKLNGSTVGDKQIYVGKFVRKGDR--ILPG---YDAKYT-------NLYIKNLDSD 201
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
I + L+E FS FG I S + +D +G+SKG FV + P++A +A+ MNG SK L
Sbjct: 202 ITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNL 261
Query: 203 YVAVAQRKEERRARLQAQFSQMR 225
YVA AQ+K ER L QF + R
Sbjct: 262 YVARAQKKAEREQILHRQFEEKR 284
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L D L + F E+ T+ S V RD KS C+G+VNF++ DA +A++
Sbjct: 13 SLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKL 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + + +G N+++KNL SID+ L
Sbjct: 73 KNNSYLNGKVIRVMWSHPDPSARKSGRG----------------NVFVKNLAGSIDNAGL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF ++G I S KV+ G SKG GFV F + E A+ A+ ++NG + K +YV
Sbjct: 117 HDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFV 176
Query: 209 RKEER 213
RK +R
Sbjct: 177 RKGDR 181
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 173/261 (66%), Gaps = 18/261 (6%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +ND +VFVG F +++R E A +F NV++KNL E DE L+ +FG +G S
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKF 280
Query: 119 EQAMKETVDKFQ-----------GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167
Q MK+ K + G+NLY+KNL D IDDE+L++ FS FGTITS KV +
Sbjct: 281 GQ-MKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME- 338
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRP 226
G SKG GFV FS+PEEA++A+ EMNGK++ +KPLYVA+AQRKEER+A L Q+ Q M
Sbjct: 339 GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMAS 398
Query: 227 VAMGPSVPPRMPMYPP-GPSG 246
+ GP+ P P P GPSG
Sbjct: 399 TSAGPN-PVVSPFQPAQGPSG 418
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD S + L F +G I S V+ D +G SK +GFV+FE ++A +
Sbjct: 95 KSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D + +VG+ + + +R+ EL + ++ N+YIKNLG+ +D
Sbjct: 154 AIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEFT----------NVYIKNLGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L++LF FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKHKFGQMK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + VNF+ +DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N+++KNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + ++V
Sbjct: 112 SKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + +R+A L A+
Sbjct: 171 GRFKSRRDRQAELGAR 186
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
++ LA+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L K
Sbjct: 554 ASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTK 613
Query: 439 VAEAMEVLRS 448
V EA+ VL++
Sbjct: 614 VDEAIAVLQA 623
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 166/466 (35%), Positives = 243/466 (52%), Gaps = 52/466 (11%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
K+++VG F++K +R + K+ NV++KNLD ++ L++ F E+G I S + +D +
Sbjct: 180 KEIYVGKFMKKTDR--AKAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDEN 237
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G K + FVNF+ +DA A E +NG +F + YVG+AQKK+EREQ L+ QF++ +E
Sbjct: 238 GLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQ 297
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+ K + N+Y+KN+ + +E+L++ FS+ GTITS K+M D G SKG GFV FSTPEEA
Sbjct: 298 MMKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEA 357
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP-MYPPGP 244
A+ +GKM KPLYVA AQ+KE+R+ +LQ QF S +P Y P
Sbjct: 358 IDAVKTFHGKMFHGKPLYVATAQKKEDRKMQLQVQFGNCVEGGGSSSSASFIPGTYAP-- 415
Query: 245 SGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGR 304
Y P ++ Q P + A ++ P +
Sbjct: 416 ------LYYTNTHPGMV--------YQSYPPTWKSANMISSSY-------------PNSQ 448
Query: 305 RGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF-PFDMGAGSMLPVPVDMGAGIP 363
P P I ++ + L RN + P + MLP+ D
Sbjct: 449 ALTYPSVVGNAPRKIKQNR--------KGKLDRNAVSYVPNVYQSTQMLPLSRDFSNQQL 500
Query: 364 RRDASVGQPM--PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 421
R G+ M PI + + ++ LLGE LYPLVE+LE A K+TGMLLEMD
Sbjct: 501 NRTYGRGKEMKKPIQQRQS----ETIVMEKQLLGELLYPLVEKLEPQLANKITGMLLEMD 556
Query: 422 QTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNP----ADQLAS 463
++E+L LL+SP+ L +V EA EVL+S A+ P +D LAS
Sbjct: 557 KSELLLLLKSPQELAVRVEEAFEVLKS-AKTNVTGPNTLRSDFLAS 601
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 14/205 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
RE A + NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE
Sbjct: 102 REPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVATFEDGKSRGYGFVQFEQ 161
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
D A A+E LN +E YVGK KK++R + +K+ N+Y+KN
Sbjct: 162 EDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAK------------AEEKYT--NVYMKN 207
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ++++ L+E FSEFG I S + +D +G+ KG FV F PE+A A MNG
Sbjct: 208 LDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAETMNGTRFG 267
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQ 223
SK LYV AQ+K ER L+ QF +
Sbjct: 268 SKCLYVGRAQKKAEREQLLREQFKE 292
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 18/196 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L S T+ L F E+ ++TS + +D G+S C+G+ NF + DA A+E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEK 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + ++ + + G N+++KNL +SI + L
Sbjct: 85 KNHSLLNGKMIRVMWSVREPDARRNGVG----------------NVFVKNLPESITNAVL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV G S+G GFV F + A A+ ++N + K +YV
Sbjct: 129 QDMFKKFGNIVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFM 188
Query: 209 RKEERRARLQAQFSQM 224
+K + RA+ + +++ +
Sbjct: 189 KKTD-RAKAEEKYTNV 203
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EVL LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVLPLLESDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAARAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 203/342 (59%), Gaps = 48/342 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++V+V + K++R++ K F NV+VKN+ T DE+ ++ F + G ITSA
Sbjct: 193 MLLNGQEVYVAQHVSKKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSA 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GK + FGFVN+EN +DAAKAVE LN F + +VG+AQKK ER QELK Q+
Sbjct: 253 HLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERLQELKKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E ++K+QG+NL++KNL D+IDD+KL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 313 EAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVC 372
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 373 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAA 432
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL 273
P+ G +PPR +P P P Q G P +PPQ ++
Sbjct: 433 AAAGMRGQFMPPMFYG-VMPPRGVPFNGPNPQ---QMAAMGGMPKNGVPPQQ---FRNGP 485
Query: 274 VPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 315
V G+ P GAP QQGQ R GAG Q QQ
Sbjct: 486 VYGVPPQGAP------------QQGQFM--RNGAGANQFYQQ 513
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 17/201 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNF 76
E E+ ++T +++V LD S ++ L IF G+++S V RD K+ + +VNF
Sbjct: 31 EPESQKVETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 90
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ + A+E LN + +Q+ ++ G N++I
Sbjct: 91 NDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSG----------------NIFI 134
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL ID++ L + FS FG I SCK+ D +G S+G GFV F E A A+ +NG +
Sbjct: 135 KNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGML 194
Query: 197 IVSKPLYVAVAQRKEERRARL 217
+ + +YVA K++R+++L
Sbjct: 195 LNGQEVYVAQHVSKKDRQSKL 215
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR +LGE LY V + + +AA K+TGM+L++ EV+ LLES E EA
Sbjct: 513 QKQRQVLGEQLYKKVFAKTSDEEAAGKITGMILDLPSQEVVPLLESDELFDQHFKEAFAA 572
Query: 446 LRS 448
S
Sbjct: 573 YES 575
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 156/402 (38%), Positives = 222/402 (55%), Gaps = 45/402 (11%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ DK+VFV F + +R E F N+FVKNL +S + L + F ++G + S
Sbjct: 152 MLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSH 211
Query: 59 VVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
V+ D G SKC GF++F+ D A AVE ++ K+ + ++ Y G+AQKK+ER ELK +
Sbjct: 212 KVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAK 271
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
+E+ +E + ++QG+NLY+KNL DSIDDE L+E F +FG ITS KV+ D +G SKG GFV
Sbjct: 272 YEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFV 331
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
FS+PEEA++A+ EMNG++ KPLYV +AQRKE+R+A LQ Q+ M+ V+ G + M
Sbjct: 332 CFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQY--MQRVSTGIRMQAFM 389
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
G + Q F Q P I+P G Q M P G PM
Sbjct: 390 -----GNQVVNQNF---QPPRYILPTMQGQPVQ------MFPQGTPMVR----------- 424
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDFPFDMGAGSMLPVPV 356
R A P Q+ Q P I G +R P RN+Q P ++ +
Sbjct: 425 ----ATPRWAPPNQRVQMPGMIRGRMAQQGGPQFRLTPSVRNVQ-IPSEV---------I 470
Query: 357 DMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
M +P ++ G P T S+ LANA+P++Q+ +LGE L
Sbjct: 471 QMPPQMPHQNQPAGDQAPETLTSSMLANANPQEQKQMLGERL 512
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 12/197 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L F +G I S V+ D +G SK FGFV++E+ + A +A+E +
Sbjct: 91 NVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKV 149
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +V + + +++R +E F A K NL++KNL DS D + L
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMRE----FGDAAKHFT------NLFVKNLPDSWDTDALL 199
Query: 150 ELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E F +FG + S KV+ D +G+SK GF++F ++A A+ M+ K I K LY AQ
Sbjct: 200 ENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQ 259
Query: 209 RKEERRARLQAQFSQMR 225
+K ER + L+A++ +++
Sbjct: 260 KKAERSSELKAKYEKIK 276
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + +G N++IKNL SID++ L
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQG----------------NVFIKNLDRSIDNKAL 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV + + E A RA+ ++NG ++ K ++VA +
Sbjct: 107 YDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFK 165
Query: 209 RKEER 213
+ +R
Sbjct: 166 SRNDR 170
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 190/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE + +F ++G I SA
Sbjct: 78 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQFGPIVSA 137
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+EN +DA KAVEALN + + YVG+AQKK+ER LK Q+
Sbjct: 138 SLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQY 197
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 198 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGFGFVC 257
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 258 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 317
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 318 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 374
Query: 263 PQAGF 267
PQ GF
Sbjct: 375 PQGGF 379
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 16 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 125
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 126 DLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQK 185
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 186 KNERMHVLKKQYEAYR 201
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLE+ E + EA
Sbjct: 392 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAA 451
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 452 YESFKKEQ 459
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 78 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 137
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 138 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 197
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 198 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 257
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 258 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 317
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 318 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 374
Query: 263 PQAGF 267
PQ GF
Sbjct: 375 PQGGF 379
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 16 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 125
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 126 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 185
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 186 KNERMHVLKKQYEAYR 201
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 392 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 451
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 452 YESFKKEQ 459
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 214/417 (51%), Gaps = 112/417 (26%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNLD ++E+ +++F +YG ITSA
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RDG+ GKS+ FGF F + AA AVE LN K++ ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 SISRDGETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--------- 168
E A E K+QG+NLY+KNL D IDDEKL++LF FG ITS +VMRD +
Sbjct: 326 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEK 385
Query: 169 -------------------------------------------GISKGSGFVAFSTPEEA 185
G SKG GFV FS P+EA
Sbjct: 386 EKESANKENVKDEAKKESGEEDSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEA 445
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPRMP 238
S+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P P
Sbjct: 446 SKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQP 505
Query: 239 --MYPPG-----PSGLGQQ--FLYGQAPPAIIPPQAGFGYQQQLVPGMRP----AGAPMP 285
YPPG P+ Q+ +GQ P +IP +PG RP AG P
Sbjct: 506 AVYYPPGQQGFIPANAAQRGGMAFGQQPGMVIPG----------IPGGRPGQFAAGFP-- 553
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAY 331
GQQG RG P QQ Q LPI Q P P G +Y
Sbjct: 554 ---------GQQGG-----RGINPNQQLPPNAFGLGAQGLPIGALQGPGGMPNGLSY 596
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + RD +G S+G GF F E A+ A+ E+N
Sbjct: 239 YVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEELN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 299 DKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 330
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGKPCRI------------MWSQRDPALRKTG---QG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 169/253 (66%), Gaps = 7/253 (2%)
Query: 1 MLINDKQVFVGHFLRK--QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+V+VG F + + RE +F NVF+KN + E L+K+F ++G ITS
Sbjct: 170 MLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKITSC 229
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--REWYVGKAQKKSEREQELKG 116
VM D DGKSK FGFV FEN +DA KAV ++ + D R+ YV +AQKK+ER ELK
Sbjct: 230 AVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKR 289
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++EQ E + ++QG+NLY+KNL D++DDE L++ F +G ITS KVM D +G SKG GF
Sbjct: 290 RYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGF 349
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
V F P+EA++A+ EMNGKM+ +KPLYVA+AQRKE+R+A+L +Q+ Q R ++
Sbjct: 350 VCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGA 408
Query: 237 MP--MYPPGPSGL 247
MP MY PG G
Sbjct: 409 MPGTMYTPGNGGF 421
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 121/198 (61%), Gaps = 12/198 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A KA+E +
Sbjct: 108 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 167
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK Q ++ R +E M ET +F N++IKN D +D EKL+
Sbjct: 168 NGMLLEGKKVYVGKFQPRAARMRE--------MGETARRF--TNVFIKNFADELDKEKLE 217
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+LF++FG ITSC VM D G SKG GFVAF PE+A +A+ EM+ + + LYV A
Sbjct: 218 KLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRA 277
Query: 208 QRKEERRARLQAQFSQMR 225
Q+K ER A L+ ++ Q +
Sbjct: 278 QKKNERSAELKRRYEQQK 295
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ +
Sbjct: 80 MNFDVMYGKPIRIMWSQRDPSMRRSGAG----------------NIFIKNLDKSIDNKAI 123
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SKG GFV F T E A +A+ ++NG ++ K +YV Q
Sbjct: 124 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQ 183
Query: 209 RKEER 213
+ R
Sbjct: 184 PRAAR 188
>gi|297791101|ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 189/322 (58%), Gaps = 59/322 (18%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
++ Q L IK + + D+ + L E T T+ + + +S+GSGFVAFSTPEEAS
Sbjct: 67 NQIQALVRVIK-VARTYRDDNVPSLIEEVITTTTHRSL----SLSRGSGFVAFSTPEEAS 121
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 246
RA+ EMNGKMIV+KPLYVA+AQRKE+ +ARLQ MRPV M P+V PRM MYPPG
Sbjct: 122 RAITEMNGKMIVTKPLYVALAQRKEDCKARLQ-----MRPVNMPPAVGPRMQMYPPGGPP 176
Query: 247 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRG 306
+GQQ YGQ P P M P P P F QQ PG R G
Sbjct: 177 MGQQLFYGQGP-----------------PAMIP---PQPGFGY------QQQLVPGMRPG 210
Query: 307 AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 366
P MP+ + P+ + Q G G+ RD
Sbjct: 211 GSP----------MPN--------FFMPMMQQGQQQQQQQQQQQ-----QQYGGGVHHRD 247
Query: 367 ASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 426
+ Q +PI AL+T LANA+PEQQRT+LGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVL
Sbjct: 248 SPASQSVPIGALATQLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVL 307
Query: 427 HLLESPEALKAKVAEAMEVLRS 448
HLLESPEALKAKV EAM+VLRS
Sbjct: 308 HLLESPEALKAKVTEAMDVLRS 329
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 166/237 (70%), Gaps = 6/237 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
I K V+VG F ++ +R + + NVFVKNL D++L K+ E+G ITSAVVM+
Sbjct: 179 IEGKIVYVGPFQKRADRP----QDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMK 234
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G SK FGF+NF++A+ AAK VE LN ++ + Y G+AQKK+ERE L+ + E++
Sbjct: 235 DDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESK 294
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+E K+QG+NLY+KNL D +DD+ L+ELF+ GTITSCKVM+D SG SKG GFV F++
Sbjct: 295 QERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSH 354
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+EA+RA+ EMNGKM+ KPLYVA+AQRK+ RRA+L+A Q R + MG P PM
Sbjct: 355 DEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANM-QAR-MGMGAMSRPPNPM 409
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 16/201 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ A K+ N+F+KNLD++ + L F +G I S V D +G SK +GFV+FE
Sbjct: 103 HRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFE 162
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +N K+ + + YVG QK+++R Q++ N+++K
Sbjct: 163 DQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQDVY----------------TNVFVK 206
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL I D++L ++ +E G ITS VM+D G SKG GF+ F E A++ + +N + +
Sbjct: 207 NLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREM 266
Query: 198 VSKPLYVAVAQRKEERRARLQ 218
K LY AQ+K ER A L+
Sbjct: 267 SGKTLYAGRAQKKTEREAMLR 287
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADD---AAK 84
++++V +L++ T+ L ++F G + S V RD +S + +VN+ +A D A +
Sbjct: 23 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADR 82
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E LN + + + + + + G N++IKNL +ID
Sbjct: 83 AMETLNYHVVNGKPMRIMWSHRDPSARKSGVG----------------NIFIKNLDKTID 126
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + FS FG I SCKV D +G+SKG GFV F A RA+ +N K I K +YV
Sbjct: 127 AKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYV 186
Query: 205 AVAQRKEER 213
Q++ +R
Sbjct: 187 GPFQKRADR 195
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 387 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
PEQQ+ ++GE LYP V +L+ D A K+TGMLLEMD E+L LLES EAL +KV EA+ VL
Sbjct: 565 PEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVL 624
Query: 447 R 447
+
Sbjct: 625 K 625
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/263 (50%), Positives = 171/263 (65%), Gaps = 13/263 (4%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV FE + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ D G+NLY+KNL DSIDDE+L + FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHDSAFGVNLYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVAMGPSV 233
F + EA+ A+ E+NG+++ SKPLYVA+AQRKEER+A L +Q+ + MR +G
Sbjct: 333 CFISANEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIF 392
Query: 234 PPR------MPMYPPGPSGLGQQ 250
PP +P PP G Q
Sbjct: 393 PPNAAGGFFVPTMPPNQRFFGPQ 415
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD++ ++ + F +G I S V D SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + +L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKTIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 561 IASLLANAKPQEQKQILGERLYPMIERMHPSLAGKITGMLLEIENSELLHMIEDQEALKA 620
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 621 KVEEAVAVLQ 630
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 256/504 (50%), Gaps = 76/504 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVA-----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 55
M + +K++FV F+R+ ER + + KF N++V+N E+ +E LK+ F +G I
Sbjct: 192 MQLGNKKIFVAPFVRRSERVSSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFGEI 251
Query: 56 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD----DREWYVGKAQKKSE-- 109
TS ++ D G+ F F+N+ A A+E +NGK F D+ G+ KSE
Sbjct: 252 TSMMMKSDPLGRK--FAFINYAENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTDKSETK 309
Query: 110 -----------REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 158
R LK +++ E K+QG+NLYIKNL DSI+D +L+ELF FG I
Sbjct: 310 LLVCAHQDRARRHAMLKAKYDSMHAENKSKYQGVNLYIKNLDDSINDAELRELFEGFGLI 369
Query: 159 TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 218
TSCKVM D G S G GFV F +PE+A+ A++EM+ K++ +KPLYV +A+++E+R RLQ
Sbjct: 370 TSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQ 429
Query: 219 AQFS-----------QMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAG- 266
++ + P M P + +PM P + Q++Y P I P +
Sbjct: 430 MRYKVGHNRDGMPMGMLPPHGMMPPMHMGVPMMP-----VNGQYMYPN--PNIHGPNSSQ 482
Query: 267 ------FGYQQQLVPGMRPAGAPMP------NFFVPVVSQGQQGQRPGGRRGAG-PVQQT 313
+ ++ Q PG+ P G +P N VP+ G R G RG PVQ+
Sbjct: 483 QNAMMPYQWRHQYHPGIPPVGMQVPFNARGANMPVPMRVYNPMGNR--GVRGQNVPVQKL 540
Query: 314 QQPLPIMPHQMPPRGHAYRY-PLGRNMQDF-------PFDMGAGSMLPVPVDMGAGIPRR 365
Q + G +++ P RN + P G + +P R
Sbjct: 541 GQ------NGDKAMGDGFKFTPQARNRMEMVQSDHSDPATAGNARAHARATATTSAVPGR 594
Query: 366 DA--SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 423
D+ + Q ITA + LA A P Q+ +LGE L+P++ + + A KVTGM+LEMD +
Sbjct: 595 DSNDTTFQEAHITAAT--LAAAHPNMQKQMLGEKLFPIIARHNPELAGKVTGMMLEMDNS 652
Query: 424 EVLHLLESPEALKAKVAEAMEVLR 447
E+L LLES + L AK EA+ VL+
Sbjct: 653 ELLILLESEKQLIAKADEAIRVLQ 676
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 28/219 (12%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KN+DES + L F YG I S V D G+S+ +GFV+F+ +A +
Sbjct: 125 KSGAGNVFIKNIDESIDTKALYDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATR 184
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD-KFQGLNLYIKNLGDSI 143
A+ NG + +++ +V ++SER K +++ VD KF NLY++N ++
Sbjct: 185 AISDANGMQLGNKKIFVAPFVRRSERVSSTK------LEDGVDEKFT--NLYVRNFPENW 236
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP-- 201
++E LKE FS FG ITS + DP G + F+ ++ A A+ MNGK K
Sbjct: 237 NEEILKENFSPFGEITSMMMKSDPLG--RKFAFINYAENSMAKAAIETMNGKDFSIKSGD 294
Query: 202 ---------------LYVAVAQRKEERRARLQAQFSQMR 225
L V Q + R A L+A++ M
Sbjct: 295 KSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKYDSMH 333
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 17/184 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L T+ L +IF G + S V RD KS + +VN+ N +DA +A+EAL
Sbjct: 43 LYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALEAL 102
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+ ++ + S R+ L+ K N++IKN+ +SID + L
Sbjct: 103 KYNEICGKQVRI----MWSHRDPSLR------------KSGAGNVFIKNIDESIDTKALY 146
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS +G I SCKV D +G S+G GFV F T A+RA+++ NG + +K ++VA R
Sbjct: 147 DAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVR 206
Query: 210 KEER 213
+ ER
Sbjct: 207 RSER 210
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 212/374 (56%), Gaps = 63/374 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F NV+VKN+ TD++ +++F ++G +TS+
Sbjct: 210 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSS 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GK + FGFVNF + A KAVE LNGK F +E YVG+AQKK ERE+EL+ +
Sbjct: 270 SLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSY 329
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E +K+QG+NLYIKNL D +DDEKL+++F+EFG ITS KVMRD
Sbjct: 330 EAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQ 389
Query: 169 --------------------------------GISKGSGFVAFSTPEEASRALAEMNGKM 196
G SKG GFV FS P++A++A+AEMN +M
Sbjct: 390 EKDKENQKEAENEAESAESAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRM 449
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 256
I +KPLYVA+AQRK+ R+++L+A + M + +G+ QQ++
Sbjct: 450 INNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AAAGMPQQYM---Q 497
Query: 257 PPAIIPPQAGFGYQQQLVP-GMRPAGAPMPNFFVPVVSQGQQGQRPGG-RRGAGPVQQTQ 314
PP P G Q +P G R P P +P V G+ GQ PG ++G V Q
Sbjct: 498 PPVFYAP----GQQPGFIPQGGRGMPFPQPGMPLPNVQGGRPGQFPGYPQQGGRNVPQGI 553
Query: 315 QP-LPIMPHQMPPR 327
P + +P Q PP+
Sbjct: 554 PPNMYGIPGQFPPQ 567
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNV 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+G + D++ +ELF +FG +TS + RD G +G GFV F+T E A +A+ ++NG
Sbjct: 243 YVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNG 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 303 KDFRGQELYVGRAQKKHEREEELRKSYEAAR 333
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%)
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
+LGE ++P ++ + + A K+TGMLLEMD +E+++L+E ALKAKV EA+ V +
Sbjct: 674 ILGELIFPKIQAINAELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 733
Query: 453 QA 454
QA
Sbjct: 734 QA 735
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 120 LNYTLIKGRPCRIMWSQR 137
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/220 (56%), Positives = 165/220 (75%), Gaps = 4/220 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ER V KFNNV+VKNL E T DE L++IF YG I SA
Sbjct: 160 MLLNGKKVFVGRFMSRRERLEVLDLGMRKFNNVYVKNLSEETDDEKLREIFELYGKIISA 219
Query: 59 VVMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
VM D KSK FGFV+FEN + A KAVEALNG + YVG+AQ K ER+ ELK +
Sbjct: 220 KVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEK 279
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ KE ++++QG+NL++KNL D+IDD++L++ F++FGTITS KVM + +G SKG GFV
Sbjct: 280 FERIRKERINRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTE-NGRSKGFGFV 338
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217
FS+PEEA++A+ EMN K+I ++PLYVA+AQRKE+R+A L
Sbjct: 339 YFSSPEEATKAIVEMNEKIIEARPLYVALAQRKEDRKAYL 378
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 118/202 (58%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+K LD+S ++ L F +G I+S ++ D G S+ +GFV+FE + A
Sbjct: 94 KSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVHFETDEAARI 152
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ +VG+ + ER + L + M+ KF N+Y+KNL + D
Sbjct: 153 AIEKVNGMLLNGKKVFVGRFMSRRERLEVL----DLGMR----KFN--NVYVKNLSEETD 202
Query: 145 DEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
DEKL+E+F +G I S KVM D S SK GFV+F PE A +A+ +NG K LY
Sbjct: 203 DEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILY 262
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ K ER+A L+ +F ++R
Sbjct: 263 VGRAQTKIERQAELKEKFERIR 284
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V++L T++ L K F G + S V RD +S + +VNF DA +A++
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDT 70
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
+N R WY +R+ L+ K V N++IK L SID
Sbjct: 71 MNFDIIKGRPIRITWY--------QRDPSLR-------KSGVG-----NVFIKKLDKSID 110
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I+SCK++ D G S+G GFV F T E A A+ ++NG ++ K ++V
Sbjct: 111 NKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFV 169
Query: 205 AVAQRKEERRARLQA 219
R RR RL+
Sbjct: 170 G---RFMSRRERLEV 181
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 164/454 (36%), Positives = 239/454 (52%), Gaps = 79/454 (17%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNL-DESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
V V FL ++ERE +T + N++VKNL D T++DLKK+F ++GTITS + +D +
Sbjct: 166 VTVTKFLSRKEREQQGGRT-YTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDEND 224
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQKKSEREQELKGQFEQAMKET 125
KS+ FGFVNFEN++ A AVEA+N K+ + DR+ +VG+A KK ERE+ELK ++ +E
Sbjct: 225 KSRGFGFVNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQER 284
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+K + NLYIK+L + + ++ L++ FS+FGTITS K+M D +G S+G GFV F + +EA
Sbjct: 285 DEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEA 344
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS 245
+ A+ EM+G MI KPLYVA+A RK +R Q Q + R ++P +MPM
Sbjct: 345 AAAIQEMHGSMIDGKPLYVALALRKVDR----QKQLASRR------TMPGQMPM------ 388
Query: 246 GLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM-------------RPAGAPMPNFFVPVV 292
G P + PPQA P M + AP N +
Sbjct: 389 --------GYLPFMMPPPQANMMRMGNRFPPMFMMQQQQQQQQQQQQQHAPGMNGNMRGR 440
Query: 293 SQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSML 352
+G + G RG GP+ QP+P+ Q P P N QD F
Sbjct: 441 GRGNPNKGNGRGRGQGPMPSQGQPMPM---QSAPSAARVAAPAPNNNQD-EF-------- 488
Query: 353 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 412
LA+ + +Q+ LLGE L+PL++Q + A K
Sbjct: 489 ---------------------------ANLAHMTDAEQKNLLGEKLFPLIQQEYHERAGK 521
Query: 413 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+TGMLL M+ EVL+LL+ + LK + EA ++L
Sbjct: 522 ITGMLLGMETAEVLNLLQDQDQLKQRAREAYDLL 555
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 15/210 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R A ++ N+F+KNL++ ++ L F +GTI S V D G+S+ +GFV+FE
Sbjct: 85 QRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGESRGYGFVHFE 144
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+DA KA++ +NGK + V K + EREQ+ + N+Y+K
Sbjct: 145 KEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRTY-------------TNIYVK 191
Query: 138 NLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
NL DS ++ LK+LF +FGTITS + +D + S+G GFV F E A+ A+ MN K
Sbjct: 192 NLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKE 251
Query: 197 I-VSKPLYVAVAQRKEERRARLQAQFSQMR 225
I + L+V A +K ER L+ ++R
Sbjct: 252 IETDRKLFVGRAMKKHERERELKRIHDKIR 281
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 89
++V +L T+ L + F + G++ S V RD + S + +VN++ DA A+E L
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N +K D+ + AQ+ + G N++IKNL ID++ L
Sbjct: 70 NFEKIHDKPCRIMWAQRNPAARRSGAG----------------NIFIKNLNKEIDNKALY 113
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FGTI SCKV D G S+G GFV F E+A +A+ +NGKM++ + + V
Sbjct: 114 DTFSAFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLS 173
Query: 210 KEER 213
++ER
Sbjct: 174 RKER 177
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 76/122 (62%), Gaps = 12/122 (9%)
Query: 5 DKQVFVGHFLRKQERETVAI------------KTKFNNVFVKNLDESTTDEDLKKIFGEY 52
D+++FVG ++K ERE K K +N+++K+L E T++ L+ F ++
Sbjct: 255 DRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKF 314
Query: 53 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 112
GTITS +M D +G S+ FGFVNF++AD+AA A++ ++G D + YV A +K +R++
Sbjct: 315 GTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALRKVDRQK 374
Query: 113 EL 114
+L
Sbjct: 375 QL 376
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 188
Q +LY+ +L + + L E FS+ G++ S +V RD S S G +V + +A A
Sbjct: 6 QNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHA 65
Query: 189 LAEMNGKMIVSKPLYVAVAQR 209
L E+N + I KP + AQR
Sbjct: 66 LEELNFEKIHDKPCRIMWAQR 86
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 196/583 (33%), Positives = 277/583 (47%), Gaps = 143/583 (24%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSA 268
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 269 TLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQ 328
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP---------- 167
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+
Sbjct: 329 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAIVDAPAEAEK 388
Query: 168 ------------SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP-------------- 201
+G A S E+ S++ + GK +KP
Sbjct: 389 DKEADKEKAKKEAGDKSEEKGEAKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFV 448
Query: 202 ------------------------LYVAVAQRKEERRARLQAQF-------SQMRPVAMG 230
LYVA+AQRK+ R+++L+A Q A G
Sbjct: 449 CFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAG 508
Query: 231 PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP 290
+ P P G G Q FL G QAG ++PGM P+G P
Sbjct: 509 MAQPFMQPAVFYGAPGQ-QGFLPGAQRGMQFAGQAGM-----VMPGM-PSGRP------- 554
Query: 291 VVSQGQQGQRPG--GRRGAGPVQQTQQPLP---IMPHQMPPRG--------HAYRYPLGR 337
GQ Q PG G RG P QPLP M +Q P G + YP
Sbjct: 555 ----GQFPQFPGQQGGRGMNP----NQPLPPNFAMGNQAIPMGAMQGAGIPNGLNYPQIG 606
Query: 338 NMQDFPFDMGAGSMLPVPVDMGAG-IPRRDASVGQP-------MPIT------------- 376
+Q F G G + AG P+ G P MPI
Sbjct: 607 QVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGAPGFAQGRNMPIQQGGRAGPGGRGQG 666
Query: 377 ----------------ALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
+++ A+ NA+PE QQ+ +LGE++YP + + + A K+TGMLLE
Sbjct: 667 APGQGGIPRDEAAGSGSINLAVFNAAPEPQQKQMLGEAIYPKILAQQPELAGKITGMLLE 726
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
MD +E++ L++ AL+AKV EA+ V + + + PA + A
Sbjct: 727 MDNSELIGLVDDDVALRAKVDEALTVYDEYVKNKNDAPAGEAA 769
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 135 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 194
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 195 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 241
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 302 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 226/409 (55%), Gaps = 45/409 (11%)
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKS+ FGFV+FE +DA KA NG F W QKK ER+ ELK +FEQ
Sbjct: 1 MTDDSGKSRGFGFVSFERHEDAQKAD---NG--FLKENWI----QKKVERQAELKRKFEQ 51
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFS 110
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A +VP P+
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY--MQRMASVRAVP--NPVI 166
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNF-----FVPVVSQG 295
P Y APP+ GY +P + GA P P
Sbjct: 167 NP----------YQPAPPS--------GYFMTAIPQTQNRGAYYPAAGQMAQLRPSPRWP 208
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP-V 354
QG RP + ++ P P M M P R + + A + P V
Sbjct: 209 TQGVRPQHFQNMQSAMRSSAPRPQMFGSMRPSSQLPRMTSSQRVATQAMGPRAATTAPSV 268
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
+ G+ + + G P+T ++ LA A +Q+ +LGE L+PL++ + A K+T
Sbjct: 269 TANPVRGVSQYKYATGGQEPLT--TSMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKIT 326
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVL-----RSVAQQQANNPA 458
GMLLE+D +E+LH+LESPE+L++KV EA+ VL + AQ+ N A
Sbjct: 327 GMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVTNSA 375
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 64 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATKAVTEM 122
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 123 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 155
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 177/270 (65%), Gaps = 17/270 (6%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M +ND++VFVG F +++R E A +F NV++KNL E DE L+ +F +G S
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKF 280
Query: 119 ----------EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
EQ ++ + QG+NLY+KNL D IDDE+L++ FS FGTITS KV +
Sbjct: 281 GQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-G 339
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ M+ +A
Sbjct: 340 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQY--MQRMA 397
Query: 229 MGPSVP-PRMPMYPPGPSGLGQQFLYGQAP 257
+VP P + + P GL F+ AP
Sbjct: 398 STSAVPNPGINPFQPA-QGLSGYFMTATAP 426
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD S + L F +G I S V+ D +G SK +GFV+FE ++A +
Sbjct: 95 KSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + +R+ EL + ++ N+YIKNLG+ +D
Sbjct: 154 AIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFT----------NVYIKNLGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+L++LFS FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKVERQTELKHKFGQMK 284
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD + S + VNF+ +DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N+++KNL SID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + + ++V
Sbjct: 112 SKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + +R+A L A+
Sbjct: 171 GRFKSRRDRQAELGAR 186
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
LA+A P+ Q+ +LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV E
Sbjct: 557 LASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVDE 616
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 617 AIAVLQA 623
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 169/228 (74%), Gaps = 8/228 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI----KTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 56
ML+N K+V+VG F+ ++ER +A+ +FNNV++KN + D+ ++++F +G I
Sbjct: 161 MLLNGKKVYVGKFIPRKER--IALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPFGKII 218
Query: 57 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELK 115
SA VM D GKS+ FGFV++E + A KAV+ LNG + + Y G+AQKK+ER+ ELK
Sbjct: 219 SAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQAELK 278
Query: 116 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
+FE+ E ++++QG+NLY+KNL D +DDE+L++ FS+FGTITS +VM + G SKG G
Sbjct: 279 DKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSE-GGRSKGFG 337
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FV FS+PEEA++A+ EMNG++IVSKPLYVA+AQRKE+RRA L +Q+ Q
Sbjct: 338 FVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRKEDRRAHLASQYMQ 385
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 12/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S + D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG + ++ YVGK + ER L + + +F N+YIK
Sbjct: 147 TEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALL--------GDKMKRFN--NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KM 196
N GD +DD+K++ELF FG I S KVM D G S+G GFV++ PE A +A+ +NG ++
Sbjct: 197 NFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMEL 256
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LY AQ+K ER+A L+ +F +++
Sbjct: 257 GGGKVLYAGRAQKKAERQAELKDKFEKIK 285
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDTIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D +G SKG GFV F T E A +A+ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGNILSCKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFI 174
Query: 209 RKEERRARL 217
++ER A L
Sbjct: 175 PRKERIALL 183
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 211/381 (55%), Gaps = 76/381 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N+++KN+ +D++ +++F +YG ITS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSS 271
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAVE L+GK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 272 SLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSY 331
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGS--- 174
E A E +K+QG+NLYIKNL D +DDEKL+++F+EFG ITS KVMRD PS S
Sbjct: 332 EAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEK 391
Query: 175 ----------------------------------------GFVAFSTPEEASRALAEMNG 194
GFV FS P++A++A+AEMN
Sbjct: 392 EEDNEKEPEAKEEAKETEEEDADKKADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQ 451
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ 250
+MI KPLYVA+AQRK+ R+++L+A + M + P+ M PP
Sbjct: 452 RMINGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPP-------- 503
Query: 251 FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG----GRRG 306
YGQ P I PQ G G +P P P + V G+ GQ PG G RG
Sbjct: 504 VFYGQQPGFI--PQGGRG-----MP------FPQPGIGMGGVQGGRPGQFPGYPQQGGRG 550
Query: 307 AGPVQQTQQPLPIMPHQMPPR 327
P QQ + MP Q PP+
Sbjct: 551 GVP-QQMPPNMYGMPGQFPPQ 570
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 138 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A +A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 198 TDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ D++ +ELF ++G ITS + RD G S+G GFV F+T E A++A+ E++G
Sbjct: 245 YIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHG 304
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 305 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 335
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 367 ASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVL 426
A G+ + L + LA A P QQ+ +LGE ++P ++ + + A K+TGMLLEM+ +E++
Sbjct: 639 AGRGEGNNASVLQSQLAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLEMENSELV 698
Query: 427 HLLESPEALKAKVAEAMEVLRSVAQQQAN 455
+L+E ALKAKV EA+ V + Q N
Sbjct: 699 NLIEDDVALKAKVDEALAVYDEYVKSQGN 727
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 121
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 122 LNYTLIKGRPCRIMWSQR 139
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/224 (54%), Positives = 159/224 (70%), Gaps = 3/224 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV FE + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ + G+NLY+KNL DSIDDE+L++ FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
F +P EA+ A+ E+NG+++ SKPLYVA+AQRKEER+A L +Q+
Sbjct: 333 CFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY 376
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 115/197 (58%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD ++ + F +G I S V D G SK +GFV+FE + A ++E +
Sbjct: 91 NVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEEFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
+ F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 201 DFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL ID++ +
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDRQIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 163/414 (39%), Positives = 211/414 (50%), Gaps = 105/414 (25%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNL+ T+E+ +++F +YG ITSA
Sbjct: 205 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSA 264
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF N D AA AVE LN K++ ++ YVG+AQKK ERE+EL+ Q
Sbjct: 265 SLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQ 324
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-------- 169
E A E K+QG+NLY+KNL D IDDEKL++LF FG ITS +VMRD G
Sbjct: 325 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEK 384
Query: 170 --------------------------------------------ISKGSGF--VAFSTPE 183
+ K GF V FS P+
Sbjct: 385 EKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPD 444
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPR 236
EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P
Sbjct: 445 EASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFM 504
Query: 237 MP--MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
P YPPG G IP A G GM A A P +P +
Sbjct: 505 QPAVYYPPGQQGF-------------IPANAQRG-------GM--AFAQQPGMVLPGMPG 542
Query: 295 GQQGQRP------GGRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAY 331
G+ GQ P GGR AGP QQ Q LPI Q P P G Y
Sbjct: 543 GRPGQYPGGFPQQGGRGLAGPNQQLPPNAFGMGAQGLPIGALQGPGGIPNGLTY 596
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + RD +G S+G GFV F + A+ A+ ++N
Sbjct: 238 YVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 298 DKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 329
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 111/208 (53%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGKPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDTAIDNKAL 158
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 218
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 219 AKKDRQSKFEEMKANFTNVYVKNLEPEV 246
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/224 (54%), Positives = 160/224 (71%), Gaps = 3/224 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV +E + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ + G+NLY+KNL DSIDDE+L++ FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
F +P EA+ A+ E+NG+++ SKPLYVA+AQRKEER+A L +Q+
Sbjct: 333 CFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY 376
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD++ ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEEFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVA+ T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 176/300 (58%), Gaps = 17/300 (5%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ +KQ++VG F+RK +R K+ N+++KNLD T+ L++ F +G I S + +
Sbjct: 165 VGNKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISK 224
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D +G SK F FVN+EN DDA KA+EA+NG +F + YV +AQKK+EREQ L QFE+
Sbjct: 225 DDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKR 284
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
KE + K+Q NLY+KN+ D + D++L++LFS GTITS KVMRD GISKG GFV FS P
Sbjct: 285 KEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNP 344
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 242
EEA++A+ NG KPLY+A+AQRK+ER+ +L ++ + G S P PP
Sbjct: 345 EEANKAVMSFNGCTFHRKPLYIAIAQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPP 404
Query: 243 GPSGLGQQFLYGQAPPAIIPPQAGFGYQ-QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRP 301
Y A + Q+G YQ L G R N FVP Q Q P
Sbjct: 405 ----------YFYHSVASLMFQSGLLYQPLGLRSGWR------ANDFVPPARSFQHSQVP 448
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 116/208 (55%), Gaps = 12/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ A K+ NVFVKNL S + L +F +YG I S+ V+ DGKSK +GFV FE
Sbjct: 89 HRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFVQFE 148
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E LNG +++ YVGK +K +R L G K T NLYIK
Sbjct: 149 WEESANNAIEKLNGSTVGNKQIYVGKFVRKGDR--ILPG---YDAKYT-------NLYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL I + L+E FS FG I S + +D +G+SKG FV + P++A +A+ MNG
Sbjct: 197 NLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGLQF 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
SK LYVA AQ+K ER L QF + R
Sbjct: 257 GSKYLYVARAQKKAEREQILHRQFEEKR 284
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + L F E+G+I S V RD S C+G+VNF + DA +A++
Sbjct: 13 SIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKL 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + + +G N+++KNL SID+ L
Sbjct: 73 RNNSYLNGKVIRVMWLHRDPNARKSGRG----------------NVFVKNLAGSIDNAGL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF ++G I S KV+ G SKG GFV F E A+ A+ ++NG + +K +YV
Sbjct: 117 HDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFV 176
Query: 209 RKEER 213
RK +R
Sbjct: 177 RKGDR 181
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 163/414 (39%), Positives = 211/414 (50%), Gaps = 105/414 (25%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNL+ T+E+ +++F +YG ITSA
Sbjct: 205 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSA 264
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF N D AA AVE LN K++ ++ YVG+AQKK ERE+EL+ Q
Sbjct: 265 SLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQ 324
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-------- 169
E A E K+QG+NLY+KNL D IDDEKL++LF FG ITS +VMRD G
Sbjct: 325 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEK 384
Query: 170 --------------------------------------------ISKGSGF--VAFSTPE 183
+ K GF V FS P+
Sbjct: 385 EKEASKDNKENVREETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPD 444
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPR 236
EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P
Sbjct: 445 EASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFM 504
Query: 237 MP--MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
P YPPG G IP A G GM A A P +P +
Sbjct: 505 QPAVYYPPGQQGF-------------IPANAQRG-------GM--AFAQQPGMVLPGMPG 542
Query: 295 GQQGQRP------GGRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAY 331
G+ GQ P GGR AGP QQ Q LPI Q P P G Y
Sbjct: 543 GRPGQYPGGFPQQGGRGLAGPNQQLPPNAFGLGAQGLPIGALQGPGGIPNGLTY 596
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + RD +G S+G GFV F + A+ A+ ++N
Sbjct: 238 YVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 298 DKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 329
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 158
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 218
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 219 AKKDRQSKFEEMKANFTNVYVKNLEPEV 246
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 191/572 (33%), Positives = 273/572 (47%), Gaps = 122/572 (21%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSA 268
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 269 TLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQ 328
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-----PSGISK 172
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+ P+ K
Sbjct: 329 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAIVDVPAETEK 388
Query: 173 GSGF----------------VAFSTPEEASRALAEMNGKMIVSKP--------------- 201
G + S E+ S++ + GK +KP
Sbjct: 389 GKEADKEKAKEAGDKSEEKGESKSESEDKSKSEEKSEGKTESAKPEKRHLGKSKGFGFVC 448
Query: 202 -----------------------LYVAVAQRKEERRARLQAQF-------SQMRPVAMGP 231
LYVA+AQRK+ R+++L+A Q A G
Sbjct: 449 FSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGM 508
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP--MPNF-- 287
+ P P G G Q FL G QAG ++PGM P G P P F
Sbjct: 509 AQPFMQPAVFYGAPGQ-QGFLPGAQRGMQFAGQAGM-----VMPGM-PGGRPGQFPQFPG 561
Query: 288 ------------FVPVVSQGQQGQRPGGRRGAG--------PVQQTQQ------PLPIMP 321
P + G QG G + AG + Q Q
Sbjct: 562 QQGGRGMNPNQPLPPNFAMGSQGIPMGAMQSAGIPNGLNYSQISQVQSFGRGGGRGQGPM 621
Query: 322 HQMPP--------RG--HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 371
MPP RG A + GRNM GIPR +A+
Sbjct: 622 QGMPPAAGNAPQMRGGPGAPGFAQGRNMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAGS- 680
Query: 372 PMPITALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430
+++ A+ NA+PE QQ+ +LGE++YP + + + A K+TGMLLEMD +E++ L++
Sbjct: 681 ----GSINLAVFNAAPEPQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVD 736
Query: 431 SPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
AL+AKV EA+ V + + + P + A
Sbjct: 737 DDVALRAKVDEALTVYDEYVKNKNDAPTGEAA 768
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 135 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 194
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 195 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 241
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 302 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 119 LNYTLIKGRPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/281 (47%), Positives = 181/281 (64%), Gaps = 15/281 (5%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV++KN + DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV +E + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ + G+NLY+KNL DSIDDE+L++ FS +GTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM 237
F +P EA+ A+ E+NG+++ SKPLYVA+AQRKEER+A L +Q+ MR + G +
Sbjct: 333 CFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY--MRHMT-GMRMQQLG 389
Query: 238 PMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR 278
++ P + G P + P Q FG Q+ P MR
Sbjct: 390 QLFQPNAAS-------GFFVPTMAPSQRFFG--PQMTPQMR 421
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD++ ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+YIKN D DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYIKNFTDEFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVA+ T E A A+ +NGK M K LYVA AQ
Sbjct: 201 ENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 56/70 (80%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA P++Q+ +LGE LYP++E++ A K+TGMLLE++ +E+LH+LE EALKA
Sbjct: 567 IASLLANAKPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENSELLHMLEDQEALKA 626
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 627 KVEEAVAVLQ 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 160/226 (70%), Gaps = 4/226 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ER + KF NVFVKN + DE L+++F YG I S
Sbjct: 161 MLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSH 220
Query: 59 VVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
VM+D G++K FGFV FE+ DA A + LN K + R YVG+AQKK ER+ EL+ +
Sbjct: 221 KVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQAELRNR 280
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE E +++QG+NLY+KNL DS+DDE+L++ F FGTITS KVM + G SKG GFV
Sbjct: 281 FELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSE-GGRSKGFGFV 339
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKE+R+A L +QF Q
Sbjct: 340 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEDRKAHLASQFMQ 385
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 123/209 (58%), Gaps = 12/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ + F +G I S V+ D +G SK +GFV+F
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG-SKGYGFVHFA 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A K++E +NG + ++ YVGK + ER + GQ + KF N+++K
Sbjct: 147 TEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQK--------KF--TNVFVK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 196
N GD +DDE L+E+F +G I S KVM+D SG +KG GFV F P +A A ++N K
Sbjct: 197 NFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKD 256
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I + LYV AQ+K ER+A L+ +F M+
Sbjct: 257 INGRILYVGRAQKKIERQAELRNRFELMK 285
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A+++
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ +
Sbjct: 72 MNFDVIKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F+T E A++++ ++NG ++ K +YV
Sbjct: 116 YDTFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFM 174
Query: 209 RKEER 213
++ER
Sbjct: 175 SRKER 179
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/224 (51%), Positives = 159/224 (70%), Gaps = 4/224 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+ DK++FVG F+ + ERE+ + +F NV+VKN ++ +D+D +K F YG ITS +
Sbjct: 175 MLLEDKRLFVGPFIPRGERESTNGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKI 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKK--FDDREWYVGKAQKKSEREQELKGQF 118
MR DG SKCFGFVNF+ ADDA K E +NG+K +R+ Y G+A+K+SER+++LK ++
Sbjct: 235 MRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQKPFGGERDIYAGRAEKESERKEKLKKKY 294
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGF 176
+Q E + Q +NLYIKNL D+IDDEKL++ F +FGTITS KVMRD +SKG GF
Sbjct: 295 DQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGF 354
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
V F+ PEEA+RA+ MNG+M+ +KP+YVA+ Q E RR AQ
Sbjct: 355 VCFAQPEEATRAVTAMNGQMVGTKPIYVALHQPIEIRRQMQAAQ 398
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 14/211 (6%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 76
+ R+ K+ N+F+KNLD++ L F ++G I S V D S+ FGFV F
Sbjct: 100 KHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHANSRGFGFVQF 159
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
E A++A +A+ +NG +D+ +VG + ERE T + + N+Y+
Sbjct: 160 ETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERE------------STNGERRFTNVYV 207
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KN D++ D+ ++ F +G ITSCK+MR G SK GFV F ++A + EMNG+
Sbjct: 208 KNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQK 267
Query: 197 IV--SKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +Y A+++ ER+ +L+ ++ Q+R
Sbjct: 268 PFGGERDIYAGRAEKESERKEKLKKKYDQIR 298
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + T+ L ++F G + S V RD +S + +VNF N DA +A++
Sbjct: 25 SLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALDT 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + GKA + + ++ ++ K N++IKNL ++D L
Sbjct: 85 LNYTQIK------GKACRIMWKHRD----------PSIRKSGAGNIFIKNLDKTVDTRTL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ FS+FG I SCKV D S+G GFV F T EEA+ A++++NG ++ K L+V
Sbjct: 129 HDTFSQFGNILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFV 184
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/268 (51%), Positives = 179/268 (66%), Gaps = 8/268 (2%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN + DE LK++F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKDLGEKAKLFTNVYVKNFGDDVDDEKLKEMFDPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSKCFGFV FE + A AVEALNGK D + YV +AQKK+ER+QELK +
Sbjct: 213 KVMIKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ K+ + G+NLY+KNL D+IDDE+L++ FS FGTITS KVM D G SKG GFV
Sbjct: 273 FEELKKKRQESVYGVNLYVKNLDDTIDDERLRKEFSLFGTITSAKVMTDEDGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
F P EA+ A+ EMNG+++ SKPLYVA+AQRKE+R+A L +Q+ + MR +G
Sbjct: 333 CFVAPHEATCAVTEMNGRVVGSKPLYVALAQRKEDRKAHLASQYMRHMAGMRMQQIGQMF 392
Query: 234 PPRMPMYPPGPS-GLGQQFLYGQAPPAI 260
P P P+ G GQ+F Q P A+
Sbjct: 393 QPNTPGNFFVPTMGPGQRFFGPQVPTAM 420
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ NVF+KNLD++ ++ + F +G I S V D G SK +GFV+FE + A
Sbjct: 86 RSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYGFVHFETEEAANN 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ YVGK + ERE++L E+A T N+Y+KN GD +D
Sbjct: 146 AIEKVNGMLLNGKKVYVGKFIPRKEREKDLG---EKAKLFT-------NVYVKNFGDDVD 195
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLY 203
DEKLKE+F +G ITS KVM G SK GFVAF T E A A+ +NGK M K LY
Sbjct: 196 DEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKALY 255
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
VA AQ+K ER+ L+ +F +++
Sbjct: 256 VARAQKKAERQQELKRKFEELK 277
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGIG----------------NVFIKNLDKTIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ A+ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKDL 175
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 371 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430
Q P L++ LANA+P++Q+ +LGE LYP++E + A K+TGMLLE++ +E+LH++E
Sbjct: 568 QKGPEKLLASMLANANPQEQKQILGERLYPIIELAHPNMAGKITGMLLEIENSELLHMIE 627
Query: 431 SPEALKAKVAEAMEVLR 447
EALKAKV EA+ VL
Sbjct: 628 DQEALKAKVEEAVAVLH 644
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 162/234 (69%), Gaps = 4/234 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ + ERE + K+K + NV+VKN + T E L +F YGTITS
Sbjct: 163 MLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSC 222
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVM + DG SK FGF+ FE + A KAV +N + + YVG+AQKKSER +ELK +
Sbjct: 223 VVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYVGRAQKKSERIKELKKCY 282
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++ QG N+YIKNL D+ D+++L++ FS+FG ITS KVM + G SKG GFV
Sbjct: 283 EQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTE-GGRSKGFGFVC 341
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGP 231
FSTPEEAS+A+ EM+G+MI SKP+YVA+AQR E+RRA L AQ Q +R M P
Sbjct: 342 FSTPEEASKAITEMDGRMIGSKPIYVALAQRYEDRRAYLSAQCMQRIRHQTMSP 395
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ + F +G I S V D DG SK +GFV+FE+ + A K
Sbjct: 96 KSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVSKGYGFVHFESIEAANK 155
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ YVGK ++ERE+E+ E++ K T N+Y+KN G ++
Sbjct: 156 AIEKVNGMLLNGKKVYVGKFIPRAEREKEIG---EKSKKYT-------NVYVKNFGRNLT 205
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
E+L +LF +GTITSC VM +P G SKG GF+AF PE A +A+ EMN + LYV
Sbjct: 206 QEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYV 265
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER L+ + QM+
Sbjct: 266 GRAQKKSERIKELKKCYEQMK 286
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ +LGE +Y ++E+ + A K+TGMLLE+D +E+ L+ + +LKAKV EA+ VL++
Sbjct: 499 KRMLGERMYRVIEKTYPEIAGKITGMLLEIDISELKALVNNEGSLKAKVEEAVAVLQA 556
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G +V FS EA R L
Sbjct: 13 SLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDT 72
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++ KP+ + +QR
Sbjct: 73 MNFDLLKGKPIRIMWSQR 90
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/255 (49%), Positives = 167/255 (65%), Gaps = 8/255 (3%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML++ K+V+VG F + +R E K+ NVFVKN E E L K+F +YG ITSA
Sbjct: 203 MLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VVM D DGK K FGFV + + D A KAV+ LN K + D + V +AQKKSER +LK
Sbjct: 263 VVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKR 322
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++E +E V ++QG+NLY+KN+ + + DE L+ F+ FGTITS KVM D +G SKG GF
Sbjct: 323 KYEALKQERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGF 382
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGP---S 232
V F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q + + MG
Sbjct: 383 VCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQLASQYMQKLATLRMGQQTNG 442
Query: 233 VPPRMPMYPPGPSGL 247
VP P+YP G G
Sbjct: 443 VPGMAPIYPQGQQGF 457
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 123/210 (58%), Gaps = 12/210 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A + N+F+KNLD ++ + F +G I S V D DG S+ +GFV+FE
Sbjct: 129 QRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NG ++ YVGK Q +++R +EL E +K T N+++K
Sbjct: 189 TEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELG---ESGLKYT-------NVFVK 238
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D EKL ++FS++G ITS VM D G KG GFVA++ P+ A +A+ ++N K +
Sbjct: 239 NFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTL 298
Query: 198 VSKPLYVAV--AQRKEERRARLQAQFSQMR 225
L ++V AQ+K ER A L+ ++ ++
Sbjct: 299 EGTDLKLSVCRAQKKSERTADLKRKYEALK 328
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G + S V RD + S + +VNF+ DA +A++
Sbjct: 53 SLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 112
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL ID++ +
Sbjct: 113 MNFETIHGRPMRIMWSQRDPAARRAGNG----------------NIFIKNLDRVIDNKSI 156
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G S+G GFV F T E A A+ ++NG ++ K +YV Q
Sbjct: 157 YDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQ 216
Query: 209 RKEERRARL 217
+ +R L
Sbjct: 217 TRAQRLKEL 225
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 188/307 (61%), Gaps = 42/307 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++VG L K+ERE+ +K F NV++KN++ TTD++ +++ ++G S
Sbjct: 186 MLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSV 245
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ R +G++K FGFVNF N +DA K VE LN +F + YV +AQKK ER+QELK Q+
Sbjct: 246 VLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQY 305
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL DSIDD+KL+E F+ +GTITS KVM +G SKG GFV
Sbjct: 306 EATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVC 365
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 366 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAA 425
Query: 226 ------------PVAMGPSVPPR-MPMYPPGP--SGLG---------QQFLYGQAPPAII 261
P+ G +PPR +P P P + +G QF G P +
Sbjct: 426 AAAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQMANMGAMPKNGMPPHQFRNG--PVYGV 482
Query: 262 PPQAGFG 268
PPQ GF
Sbjct: 483 PPQGGFA 489
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ V D GKSK FG+V+FE + A++A++AL
Sbjct: 124 NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG + +E YVG K ERE +E+K F N+YIKN+ D+
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANF-------------TNVYIKNINTETTDK 230
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ +EL ++FG S + R P G +KG GFV F E+A + + E+N +PLYV
Sbjct: 231 EFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNR 290
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ Q+ R
Sbjct: 291 AQKKYERQQELKKQYEATR 309
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD S ++ L IF G ++S V RD K+ + +VNF + D A A+E
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ ++ G N++IKNL ID++ L
Sbjct: 96 LNFTPIKGKLCRIMWSQRDPSLRKKGAG----------------NIFIKNLHPDIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I S KV D +G SKG G+V F E AS A+ +NG ++ + +YV
Sbjct: 140 YDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHL 199
Query: 209 RKEERRARLQ 218
K+ER ++ +
Sbjct: 200 SKKERESKFE 209
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 115 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKG 173
+G E+ ETV +LY+ +L S+ + L ++FS G ++S +V RD + S G
Sbjct: 22 EGTNEENQSETV----SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLG 77
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
+V F+ + A A+ ++N I K + +QR R +
Sbjct: 78 YAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 388 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 446 LRS 448
S
Sbjct: 561 YES 563
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 169/486 (34%), Positives = 250/486 (51%), Gaps = 46/486 (9%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I K+V V F++KQ+R+ ++ F N++V+N S +E LK+ +YG ITS ++
Sbjct: 182 MVIGGKKVEVSPFIKKQDRDPASVDV-FTNLYVRNFPVSWDEEALKQFLDKYGEITSMMI 240
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQF 118
DG G+ F FVNF + A +AVEALNG K ++ V Q K++R+ LK Q+
Sbjct: 241 KEDGKGRK--FAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQY 298
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ ++ NLYIKNL DS DE L+ELF +FG+ITSCK+MRD SG+S+G GFV
Sbjct: 299 ISGLDGSIASKASSNLYIKNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVC 358
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG----PSVP 234
FS PEEA++A+A M+ K++ KPLYV +A++KE+R +RLQ +M PSV
Sbjct: 359 FSRPEEATKAIAGMHLKIVKGKPLYVGLAEKKEQRLSRLQQSSRSRNGDSMNQGPIPSVL 418
Query: 235 PRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGM-----RPAGAPMPNFFV 289
+P Y GQ F G + Y Q +P M +G+P+P
Sbjct: 419 HGVPGYQDASGFYGQGFRGGPQGVGVPGRGVRM-YPQSHIPVMPRNMHLSSGSPLPPNNA 477
Query: 290 --------PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP---------PRGHAYR 332
P + G QG P R G + + PH P P R
Sbjct: 478 GLSGMQGSPNLHSGMQGS-PSLRSGLQGTPNIHPGIQVTPHGAPNIHPAMPTIPNVIQRR 536
Query: 333 YPLGRN--MQDFPF-------DMGAGSMLPVPVDMGAGIPRR--DASVGQPMPITALSTA 381
+N + F F ++G+ + VP+ G+P + QP +T
Sbjct: 537 VMPTKNAPVSGFKFTAQARNREVGSTMSMGVPMHPNMGMPTQAPGQQTMQPAMQGNATTH 596
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L + + ++Q ++GE L+P+V + D A K+TGM+LE+D E+L LLE LKAK+ E
Sbjct: 597 LDDTAFQKQ--MIGERLFPIVARDNPDLAGKITGMMLEIDNAELLALLEDDARLKAKIDE 654
Query: 442 AMEVLR 447
A+ VL+
Sbjct: 655 AIRVLK 660
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 17/199 (8%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD S + F +G I S V D +G SK +GFV+++ + A +
Sbjct: 115 KSGAGNIFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKE 174
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG ++ V KK +R+ +VD F NLY++N S D
Sbjct: 175 AIEKVNGMVIGGKKVEVSPFIKKQDRD-----------PASVDVFT--NLYVRNFPVSWD 221
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPL 202
+E LK+ ++G ITS + D G + FV F+ PE A A+ +NG + S+PL
Sbjct: 222 EEALKQFLDKYGEITSMMIKEDGKG--RKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPL 279
Query: 203 YVAVAQRKEERRARLQAQF 221
V Q K +R+A L++Q+
Sbjct: 280 LVCPHQDKAKRQAFLKSQY 298
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 25/189 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L ++F G ++S V RD KS + +VN+ + DA A+E+
Sbjct: 32 SLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALES 91
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE----TVDKFQGLNLYIKNLGDSID 144
LN Y+ ++KG + M T+ K N+++KNL SID
Sbjct: 92 LN---------YI-----------DIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSID 131
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ + FS FG I SCKV D +G+SKG GFV + T E A A+ ++NG +I K + V
Sbjct: 132 TKAFYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEV 191
Query: 205 AVAQRKEER 213
+ +K++R
Sbjct: 192 SPFIKKQDR 200
>gi|413918856|gb|AFW58788.1| hypothetical protein ZEAMMB73_448418 [Zea mays]
Length = 212
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 132/210 (62%), Positives = 153/210 (72%), Gaps = 4/210 (1%)
Query: 264 QAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ 323
Q GF +QQQLVPGMRP G MPN++VPVV QGQQG RPG RRGAG Q P Q
Sbjct: 6 QPGFAFQQQLVPGMRPGGPHMPNYYVPVVQQGQQGPRPGIRRGAGAQGQQPVP--PFQQQ 63
Query: 324 MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALA 383
+ PRG YRYP GRNM + P G + DMG G P RDA++ I L++ALA
Sbjct: 64 ILPRGRMYRYPTGRNMPEAPAMPGVAGGMIQAYDMG-GFPVRDAALSPAAQIGTLTSALA 122
Query: 384 NASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
NA+PEQQRT+LGE+LYPLVEQLE + AAKVTGMLLEMDQTEVLHLLESP+ALK+KVAEAM
Sbjct: 123 NANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEAM 182
Query: 444 EVLRSVAQQQANN-PADQLASLSLNENLVS 472
+VLR+VA QQ N P QLA+LSL E ++S
Sbjct: 183 DVLRNVAHQQNPNLPTSQLAALSLTEGIMS 212
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 160/218 (73%), Gaps = 6/218 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++N K V+VG F+ ++ER + KF N+++KNL E+ T+EDLK+ FG +GT+ SAV+M
Sbjct: 162 MLNGKIVYVGRFIARKERTPGSDPEKFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLM 221
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+D + F FVNFE+ + A +A E LNG+K D+E YVG+AQKKSERE L+ +
Sbjct: 222 KDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFLR----KL 277
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE--FGTITSCKVMRDPSGISKGSGFVAF 179
+E K+QG+NLYIKNL D+++DE+L +LFS FG ITSCKVM D G S+G GFV +
Sbjct: 278 REERAQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCY 337
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217
+ PE+AS+A++EMNGKM+ +KP+YVA+A+RK+ R A+L
Sbjct: 338 TNPEDASKAVSEMNGKMVANKPIYVALAERKDVRSAKL 375
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 12/189 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ L F +G I S V+ DG G SK +GFV++E ++ A A+ +
Sbjct: 99 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKV 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NGK + + YVG+ + ER +KF N+YIKNLG++ +E LK
Sbjct: 159 NGKMLNGKIVYVGRFIARKERTP----------GSDPEKFT--NIYIKNLGEAYTEEDLK 206
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F FGT+ S +M+DP I + FV F E A RA E+NG+ + K +YV AQ+
Sbjct: 207 RDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQK 266
Query: 210 KEERRARLQ 218
K ER + L+
Sbjct: 267 KSERESFLR 275
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L+ + T+ L +IF G + S V RD +S + +VNF N DA +A++
Sbjct: 11 SLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALDT 70
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + + + + +G N++IKNL SID++ L
Sbjct: 71 LNYTLIKGRPCRIMWSHRDPSIRKSGQG----------------NIFIKNLDKSIDNKAL 114
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G SKG GFV + T E A A+A++NGKM+ K +YV
Sbjct: 115 YDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFI 174
Query: 209 RKEER 213
++ER
Sbjct: 175 ARKER 179
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 391 RTLLGESLYPLVEQLERDAAA-KVTGMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+ ++GE+LYPLVE L K+TGMLLE MD TE+LHLL+SP+AL+ KV EA+ VL++
Sbjct: 389 KNIIGETLYPLVEALTSATQGPKITGMLLESMDVTELLHLLQSPDALREKVDEAVGVLKA 448
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
+Q +LY+ +L ++ + L E+F G + S +V RD + S G +V F +A R
Sbjct: 7 YQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAER 66
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL +N +I +P + + R
Sbjct: 67 ALDTLNYTLIKGRPCRIMWSHR 88
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/225 (50%), Positives = 161/225 (71%), Gaps = 6/225 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NG++ R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDDEKL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS+PEEA++A+ EMNG+++ +KPLYVA+A E R+A L Q+ Q
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALA---EGRKAILTNQYMQ 381
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQN 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +AM+ T N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREVELGA---RAMEFT-------NIYVKNLHVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L++LFS+FG + S KVMRD SG S+G GFV F EEA +A+ MNG+ + + LYV
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVG----------------NIFIKNLEDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A A++ MNG ++ + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEERRARLQAQ 220
+ ER L A+
Sbjct: 175 SRREREVELGAR 186
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +LESPE
Sbjct: 555 PLTA--SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPE 612
Query: 434 ALKAKV 439
+L AKV
Sbjct: 613 SLNAKV 618
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 207/375 (55%), Gaps = 71/375 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+ TDE+ +++F ++G +TSA
Sbjct: 213 MLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSA 272
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD D KS+ FGFVNF N + AAKAV+ LNGK F ++ YVG+AQKK ERE+EL+
Sbjct: 273 SLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKS 332
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E A E K+QG+NLY+KNL D +DD+KL+ELF+ FG+ITS KVMRD
Sbjct: 333 YEAARIEKASKYQGVNLYVKNLDDDVDDDKLRELFTPFGSITSAKVMRDTPAETAEAEEK 392
Query: 167 --------------------------------PSGISKGSGFVAFSTPEEASRALAEMNG 194
G SKG GFV F+ PEEAS+A+ +MN
Sbjct: 393 EKKDSEKNKENIKEGETAEAENTEDKPKSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQ 452
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 254
+M+ +KPLYVA+AQRK+ R+ +L+A + M + +G+ QQF+
Sbjct: 453 RMVNNKPLYVALAQRKDVRKNQLEASIQARNQIRMQQAA---------AAAGMPQQFM-- 501
Query: 255 QAPPAIIPPQAGFGYQQQLVPGMR---PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQ 311
P PP G+ Q GM AG P+P G QG RPG P Q
Sbjct: 502 -QTPMFYPPGQQPGFIPQAGRGMAFPPQAGMPIP---------GAQGGRPGQFPAGFPPQ 551
Query: 312 QTQQPLPIMPHQMPP 326
Q + P P QMPP
Sbjct: 552 QAGRGGP-GPQQMPP 565
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 139 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYE 198
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 199 TDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANF-------------TNI 245
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ DE+ +ELF +FG +TS + RD S S+G GFV F E A++A+ E+N
Sbjct: 246 YVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELN 305
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
GK + LYV AQ+K ER L+ + R
Sbjct: 306 GKDFKGQDLYVGRAQKKHEREEELRKSYEAAR 337
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 63 SLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEE 122
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 123 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 166
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 167 HDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHI 226
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 227 PKKDR----QSKFEEMK 239
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 377 ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 436
AL+ L+ P QQ+ LLGE+L+P ++ L+ + A K+TGMLLEM+ E+++L+E AL+
Sbjct: 689 ALAQQLSAVPPAQQKQLLGEALFPKIQVLQPELAGKITGMLLEMENQELVNLIEDDSALR 748
Query: 437 AKVAEAMEV 445
+KV EA+ V
Sbjct: 749 SKVDEALTV 757
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/232 (50%), Positives = 165/232 (71%), Gaps = 10/232 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEY-----G 53
ML+ND++VFVGHF +QERE A +F N++VKNL + L+++F ++ G
Sbjct: 161 MLLNDRKVFVGHFKSRQEREAELGARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPG 220
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
+ S VMRD G S+ FGFVNFE ++A KAV +NGK+ R YVG+AQK+ ER+ E
Sbjct: 221 KMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNE 280
Query: 114 LKGQFEQAMKETVDKFQ--GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 171
LK +FEQ ++ ++++ G+NLY+KNL DSI+DEKL++ FS +G ITS KVM + G S
Sbjct: 281 LKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTE-GGHS 339
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
KG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 340 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 391
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 124/206 (60%), Gaps = 16/206 (7%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V+ D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQL 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL + AM+ T N+Y+KNL +D
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRQEREAELGAR---AMEFT-------NIYVKNLQVDMD 203
Query: 145 DEKLKELFSEF-----GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+ L+ELFS+F G + S KVMRD SG S+G GFV F EEA +A+ +MNGK +
Sbjct: 204 EWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRG 263
Query: 200 KPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ++ ER+ L+ +F QM+
Sbjct: 264 RLLYVGRAQKRMERQNELKRKFEQMK 289
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 17/135 (12%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN---------------NVFVKNLDESTTDEDLKK 47
+ + ++VG ++ ER+ +K KF N++VKNLD+S DE L+K
Sbjct: 261 VRGRLLYVGRAQKRMERQN-ELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRK 319
Query: 48 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107
F YG ITSA VM +G G SK FGFV F + ++A KAV +NG+ + YV AQ+K
Sbjct: 320 EFSPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 378
Query: 108 SEREQELKGQFEQAM 122
ER+ L Q+ Q +
Sbjct: 379 EERKAILTNQYMQRL 393
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE
Sbjct: 433 PLTA--SMLAAAPLHEQKQMIGERLYPLIYDVHTQLAGKITGMLLEIDNSELLLMLESPE 490
Query: 434 ALKAKV 439
+L AKV
Sbjct: 491 SLNAKV 496
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGQPIRIMWSQR 89
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 190/310 (61%), Gaps = 45/310 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++V+V + +++R++ K F NV++KN+ T +++ ++ F + +TS
Sbjct: 192 MLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSV 251
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GK + FGFVN+E AAKAVE LNG +F ++ +VG+AQKK ER+QEL+ Q+
Sbjct: 252 HLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQY 311
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ+ E ++K+QG+NL+IKNL DSIDDE+L+E FS FGTITS KVM +G SKG GFV
Sbjct: 312 EQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSKGFGFVC 371
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 372 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQVTAAAAA 431
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLG------------QQF----LYGQAP 257
P+ G +PPR +P P P L QQF +YG P
Sbjct: 432 AAAGMRGQFMPPMFYG-VMPPRGVPFNGPNPQQLAAMGGMPKNGMPPQQFRNGPMYG-VP 489
Query: 258 PAIIPPQAGF 267
P P QAGF
Sbjct: 490 PQGAPQQAGF 499
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+F+KNL ++ L F +G I S + D G SK FGFV+FE+ + A +A++A
Sbjct: 129 NIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDA 188
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NG + +E YV + +R+ +L E+A K N+YIKN+ +++
Sbjct: 189 INGMLLNGQEVYVAPHVSRKDRQSKL----EEA------KANFTNVYIKNISLETPEQEF 238
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+E F + +TS + +D G +G GFV + T A++A+ E+NG + L+V AQ
Sbjct: 239 EEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQ 298
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ Q+ Q +
Sbjct: 299 KKYERQQELRRQYEQSK 315
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 102/197 (51%), Gaps = 18/197 (9%)
Query: 24 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDA 82
++T +++V LD + ++ L IF G+++S V RD K+ + +VNF + +
Sbjct: 35 VETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAG 94
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
+A+E LN + + +Q+ ++ G N++IKNL
Sbjct: 95 RQAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSG----------------NIFIKNLHAD 138
Query: 143 IDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
ID++ L + FS FG I SCK+ D +G SKG GFV F + E A A+ +NG ++ +
Sbjct: 139 IDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQE 198
Query: 202 LYVAVAQRKEERRARLQ 218
+YVA +++R+++L+
Sbjct: 199 VYVAPHVSRKDRQSKLE 215
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LLGE LY V + +AA K+TGM+L++ EV+ LLES E + EA
Sbjct: 512 QKQRQLLGEQLYKKVFARTSDEEAAGKITGMILDLPSQEVVPLLESDELFEQHFKEAFAA 571
Query: 446 LRSVAQQQ 453
+ Q+Q
Sbjct: 572 YETFKQEQ 579
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 158/211 (74%), Gaps = 3/211 (1%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIK-TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ER E + K KFNNV++KN E DE LK F +G I SA
Sbjct: 77 MLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKIISA 136
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM DGK + FGFV++E + A KAV +N K F+++ YVG+AQK++ER+ ELK +F
Sbjct: 137 KVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAELKDKF 196
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
++ +E ++++QG+NLY+KNL DSIDDEKL++ FS FGTITS KVM + G SKG GFV
Sbjct: 197 DRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTE-GGRSKGFGFVC 255
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PEEA++A+ EMNG++IV+KPLYVA+AQR
Sbjct: 256 FSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 11/205 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S ++ D G S+ +GFV+FE + A
Sbjct: 11 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARN 69
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ +VG+ + ER ++ M + + KF N+YIKN + ID
Sbjct: 70 AIEKVNGMLLNGKKVFVGRFMNRRERLEQ--------MGDKMKKFN--NVYIKNFSEEID 119
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLK F FG I S KVM G +G GFV++ PE A +A+ EMN K K LYV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 205 AVAQRKEERRARLQAQFSQMRPVAM 229
AQ++ ER+A L+ +F +++ M
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERM 204
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 167/230 (72%), Gaps = 6/230 (2%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+++VFV HF +QERE + ++ +F NV+VKNL ++ L+++F ++G S
Sbjct: 161 MLLNNRKVFVSHFKSRQEREAELGVRAMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+ FGFVNFE ++A KAV +NGK+ + YVG+AQK +ER+ ELK +F
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKF 280
Query: 119 EQA--MK-ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
+Q MK + ++ +QG+NLY+KNL DSID+E+L++ FS +G ITS KVM + G SKG G
Sbjct: 281 QQMKQMKQDRLNHYQGVNLYVKNLDDSIDNERLRKEFSPYGVITSAKVMTE-GGHSKGFG 339
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
FV FS+PEEA++A+ EMNG ++ +KPLYVA+AQRK+ER+A L QF Q R
Sbjct: 340 FVCFSSPEEATKAVTEMNGCILGTKPLYVALAQRKDERKAILTNQFMQQR 389
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL+ES ++ L F +G I S V+ D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETREAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG ++R+ +V + + ERE EL +AM+ T N+Y+KNL ID
Sbjct: 154 AISTMNGMLLNNRKVFVSHFKSRQEREAELG---VRAMEFT-------NVYVKNLQMDID 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L+ELFS+FG S KVMRD SG S+G GFV F EEA +A+ +MNGK + + LYV
Sbjct: 204 EQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+ ER+ L+ +F QM+
Sbjct: 264 GRAQKWAERQNELKRKFQQMK 284
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 362 IPRRDASVGQPM-------PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
PR V +P P+T + LA A +Q+ ++GE LYPL+ + A K+T
Sbjct: 467 CPRHHVQVQEPAVCIPGQEPLTV--SMLAAAPLHKQKQMIGERLYPLIYNVHTQLAGKIT 524
Query: 415 GMLLEMDQTEVLHLLESPEALKAK 438
GMLLE+D +E+L +LESPE+L AK
Sbjct: 525 GMLLEIDNSELLFMLESPESLNAK 548
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 142/302 (47%), Positives = 189/302 (62%), Gaps = 38/302 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ KT+ F NV+VKN+ TT+E+ K++F + G +S
Sbjct: 191 MLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSI 250
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ + DGK K FGFVN+EN +DA KAVE LN +F +E YVG+AQKK ER Q LK Q+
Sbjct: 251 VLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQY 310
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL DSIDDEKLKE F+ FGTITS KVMR +G SKG GFV
Sbjct: 311 EATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVC 370
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FS+PEEA++A+ E N +++ KPLYVA+AQRKE RR++L Q SQMR
Sbjct: 371 FSSPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQARSQMRYQQATAAAAA 430
Query: 226 -----------PVAMGPSVPPR-MPMYPPGPSGLG----QQF----LYGQAPPAIIPPQA 265
P+ G +PPR +P P P + QQF +YG P PQ
Sbjct: 431 AAAGIPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNGVPPQQFRNGPMYGMPPQG--APQG 487
Query: 266 GF 267
GF
Sbjct: 488 GF 489
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 23 AIKTKFN-NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81
A++ K N N+F+KNL+ ++ L F +G I S+ + D +G SK FGFV+FE
Sbjct: 121 ALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAA 180
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
A +A++ALNG + +E YV + ER+ +L ++T F N+Y+KN+
Sbjct: 181 AKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL--------EKTRANF--TNVYVKNVPL 230
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+E+ KELF + G +S + + G KG GFV + E+A +A+ E+N +
Sbjct: 231 DTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQE 290
Query: 202 LYVAVAQRKEERRARLQAQFSQMR 225
LYV AQ+K ER L+ Q+ R
Sbjct: 291 LYVGRAQKKYERMQALKQQYEATR 314
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD S ++ L IF G++TS V RD K+ + +VNF + + A+E
Sbjct: 41 SLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIER 100
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ ++ G N++IKNL ID++ L
Sbjct: 101 LNYTPIKGRLCRIMWSQRDPALRKKGNG----------------NIFIKNLNADIDNKAL 144
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I S K+ D +G SKG GFV F A A+ +NG ++ + +YVA
Sbjct: 145 YDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHL 204
Query: 209 RKEERRARLQ 218
++ER ++L+
Sbjct: 205 SRKERDSQLE 214
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 318 PIMPHQMPPRGHAYRYPLGRNMQDFP---FDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 374
P+ MPPRG + P + M P F G +P G PR + Q
Sbjct: 442 PMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRNGPMYGMPPQGAPQGGFPRNGNNANQ--- 498
Query: 375 ITALSTALANASPEQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESP 432
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+
Sbjct: 499 ----------FYQQKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLEND 548
Query: 433 EALKAKVAEA 442
E + EA
Sbjct: 549 ELFEQHFTEA 558
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 168/252 (66%), Gaps = 5/252 (1%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+V+VG F + R E +F NV++KN + E L+K+F ++G ITSA
Sbjct: 169 MLLEGKKVYVGKFQPRMARLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSA 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKG 116
VM D DGKSK FGFV FEN +DA KAV ++ + +R+ YV +AQKK+ER ELK
Sbjct: 229 AVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKR 288
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++EQ E + ++QG+NLY+KNL D+++D+ LK+ F +G ITS KVM D +G SKG GF
Sbjct: 289 RYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGF 348
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPSVPP 235
V F P+EA++A+ EMNGKM+ +KPLYVA+AQRKE+R+A+L +Q+ Q + + M +
Sbjct: 349 VCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRLASIRMHNAGTM 408
Query: 236 RMPMYPPGPSGL 247
+Y PG G
Sbjct: 409 HGTVYTPGTGGF 420
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 117/198 (59%), Gaps = 12/198 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A KA+E +
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKV 166
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK Q + R +E M ET +F N+YIKN D +D E L+
Sbjct: 167 NGMLLEGKKVYVGKFQPRMARLRE--------MGETTRRFT--NVYIKNFADELDKEALE 216
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+LF +FG ITS VM D G SKG GFVAF PE+A +A+ EM+ + + LYV A
Sbjct: 217 KLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRA 276
Query: 208 QRKEERRARLQAQFSQMR 225
Q+K ER A L+ ++ Q +
Sbjct: 277 QKKNERSAELKRRYEQQK 294
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ +
Sbjct: 79 MNFDMMYGKPIRIMWSQRDPSMRRSGAG----------------NIFIKNLDKSIDNKAI 122
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D SKG GFV F T E A +A+ ++NG ++ K +YV Q
Sbjct: 123 YDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQ 182
Query: 209 RKEERRARLQ 218
R ARL+
Sbjct: 183 ---PRMARLR 189
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 3/224 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV FE + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ ++ + G+NLY+KNL D+IDD++L+ FS +G ITS KVM D G SKG GFV
Sbjct: 273 FEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
F+ EA+ A+ E+NG+++ SKPLYVA+AQRKEER+A L +Q+
Sbjct: 333 CFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY 376
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 557 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 616
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 617 KVEEAVAVLQ 626
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDRAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E +DA KAVE
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEK
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+A
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 208 QRKEERRARL 217
QRKEER+A L
Sbjct: 180 QRKEERKAHL 189
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 70/93 (75%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EM
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
NGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 95
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 166/272 (61%), Gaps = 53/272 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D +DED + +F ++G ITSA
Sbjct: 199 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 SIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD--PSGISK---- 172
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KVMRD P+ S+
Sbjct: 319 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATD 378
Query: 173 ---------------------------------------------GSGFVAFSTPEEASR 187
G GFV FS P+EA++
Sbjct: 379 EKKDESKEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATK 438
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
A+ EMN KMI +KPLYVA+AQRK+ R+ +L+A
Sbjct: 439 AVTEMNQKMIENKPLYVALAQRKDVRKNQLEA 470
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE ++LF + G ITS + RD G S+G GFV + E AS A+ +N
Sbjct: 232 YVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 292 TDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +++D KA+E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 109 LNYTVIKGKPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDHAIDNKAL 152
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ ++A F+ +
Sbjct: 213 PKKERMSKFEEMKANFTNI 231
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K +++ YV AQ+K R+ +L+ +
Sbjct: 420 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQ 473
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 170/260 (65%), Gaps = 17/260 (6%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
I K V+V F ++ +R +T + NVFVKNL D++L K+ E+G ITSAVVM+
Sbjct: 179 IEGKIVYVAPFQKRADRPRA--RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMK 236
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G SK FGF+NF++A+ AAK VE LN ++ + Y G+AQKK+ERE L+ + E++
Sbjct: 237 DDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESK 296
Query: 123 KETVDKFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+E K+Q +NLY+KNL D +DD+ L+ELF+ GTITSCKVM+D SG SKG GFV F++
Sbjct: 297 QERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTS 356
Query: 182 PEEASR-ALAEMNGKMIVSKPLYVAVAQRKEERR-----ARLQAQF---SQMRP----VA 228
+EA+R + EMNGKM+ KPLYVA+AQRK+ RR A +QA+ + RP
Sbjct: 357 HDEATRPPVTEMNGKMVKGKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAG 416
Query: 229 MGPSVPPRMPMYPPGPSGLG 248
M P P MP + PGP G+
Sbjct: 417 MSP-YPGAMPFFAPGPGGMA 435
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 14/201 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ A K+ N+F+KNLD++ + L F +G I S V D +G SK +GFV+FE
Sbjct: 103 HRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFE 162
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +N KK + + YV QK+++R + + N+++K
Sbjct: 163 DQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPRA--------------RTLYTNVFVK 208
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL I D++L ++ +E G ITS VM+D G SKG GF+ F E A++ + +N + +
Sbjct: 209 NLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREM 268
Query: 198 VSKPLYVAVAQRKEERRARLQ 218
K LY AQ+K ER A L+
Sbjct: 269 SGKTLYAGRAQKKTEREAMLR 289
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADD---AAK 84
++++V +L++ T+ L ++F G + S V RD +S + +VN+ +A D A +
Sbjct: 23 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADR 82
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E LN + + + + + + G N++IKNL +ID
Sbjct: 83 AMETLNYHVVNGKPMRIMWSHRDPSARKSGVG----------------NIFIKNLDKTID 126
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + FS FG I SCKV D +G+SKG GFV F A RA+ +N K I K +YV
Sbjct: 127 AKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYV 186
Query: 205 AVAQRKEER-RAR 216
A Q++ +R RAR
Sbjct: 187 APFQKRADRPRAR 199
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 211/376 (56%), Gaps = 67/376 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F NV+VKN+ TD + +++F +YG +TS+
Sbjct: 210 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSS 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A KAV+ LNG F +E YVG+AQKK ERE+EL+ +
Sbjct: 270 SLARDQEGKSRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSY 329
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 167
E A E K+QG+NLYIKNL D +DD+KL+++FSEFG ITS KVMRD
Sbjct: 330 EAARLEKASKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQ 389
Query: 168 ---------------------------------SGISKGSGFVAFSTPEEASRALAEMNG 194
G SKG GFV FS P++A++A+AEMN
Sbjct: 390 EKDKENQKEAENEAEAESAENAEKKAEKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQ 449
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYG 254
+MI +KPLYVA+AQRK+ R+++L+A + M + +G+ QQF+
Sbjct: 450 RMINNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AAAGMPQQFM-- 498
Query: 255 QAPPAIIPPQAGFGYQQQLVP-GMRPAGAPMPNFFVPVVSQGQQGQRPGG-RRGAGPVQQ 312
PP P G Q +P G R G P P +P+ G+ GQ PG ++G V Q
Sbjct: 499 -QPPVFYAP----GQQPGFIPQGGR--GMPFPQPGMPLPQGGRPGQFPGYPQQGGRNVPQ 551
Query: 313 TQQP-LPIMPHQMPPR 327
P + +P Q PP+
Sbjct: 552 GMPPNMYGLPGQFPPQ 567
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNV 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + D + +ELF ++G +TS + RD G S+G GFV F+T E A +A+ E+NG
Sbjct: 243 YVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNG 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ + R
Sbjct: 303 NDFRGQELYVGRAQKKHEREEELRKSYEAAR 333
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452
+LGE ++P ++ + + A K+TGMLLEMD TE+++L+E ALKAKV EA+ V +
Sbjct: 673 ILGELIFPKIQAINSELAGKITGMLLEMDNTELVNLIEDEAALKAKVDEALAVYDEYVKS 732
Query: 453 QANNP 457
Q P
Sbjct: 733 QGTGP 737
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 119
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N I +P + +QR
Sbjct: 120 LNYTPIKGRPCRIMWSQR 137
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 250/481 (51%), Gaps = 70/481 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+N K+V+VG F+ ++E+E A F NV+VKN E DE LK+ F YG IT V
Sbjct: 145 MLLNGKKVYVGKFIPRKEQEEKA--KLFTNVYVKNFTEDFDDEKLKEFFEPYGKITK--V 200
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M DGKSK FGFV FE + A AV+ALNGK + + YV +AQKK+ER+QELK +FE+
Sbjct: 201 MSKEDGKSKGFGFVAFETTEAAEAAVQALNGKG-EGKSLYVARAQKKAERQQELKRKFEE 259
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+K+ +F G+NLY+KNL D+IDD++L+ FS +G ITS KV D G SKG GFV F+
Sbjct: 260 -LKQKRHEF-GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKV--DEEGRSKGFGFVCFN 315
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQ----RKEERRARLQAQFSQMRPVAMG--PSVP 234
EA+ A+ E+NG+++ S LYVA+AQ RK + ++ + MR +G P+
Sbjct: 316 PESEATCAVTELNGRVVGS--LYVALAQRKEERKADLASQYMRHMTGMRMQQLGQQPNAA 373
Query: 235 PR--MPMYPPGPSGLGQQFL--------YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM 284
+P P G Q + PPA I G + +
Sbjct: 374 SGFFVPTLPSNQRFFGSQVATQMRNTPRWQVRPPAAIQGVQ---AGAAAAGGFQGTAGAV 430
Query: 285 PNFFVPVVSQGQQGQRPGGR---------RGAGPVQQTQQPLPIMPHQMP---------P 326
P F ++G Q Q G R G T Q P M Q+P
Sbjct: 431 PTQFRSAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQAAPNM--QIPGAQIAGGAQQ 488
Query: 327 RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANAS 386
R Y+Y NM++ P P+P + + +++ LANA
Sbjct: 489 RTSNYKYT--SNMRNPPV---LHQTQPIPQQLQGKNSEK-----------LIASLLANAK 532
Query: 387 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
P++Q+ GE LYP++E + + A K+TGMLLE++ +E+LH+ EALKAKV EA+ VL
Sbjct: 533 PQEQKQ--GERLYPMIEHMHANLAGKITGMLLEIENSELLHM--DQEALKAKVEEAVAVL 588
Query: 447 R 447
+
Sbjct: 589 Q 589
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 109/196 (55%), Gaps = 21/196 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ + F +G I S V D G SK +GFV+ E A A +++ +
Sbjct: 87 NVFIKNLDRA--NKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHTEEA--ANTSIDKV 142
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + E+E++ K N+Y+KN + DDEKLK
Sbjct: 143 NGMLLNGKKVYVGKFIPRKEQEEKAK--------------LFTNVYVKNFTEDFDDEKLK 188
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E F +G IT KVM G SKG GFVAF T E A A+ +NGK K LYVA AQ+
Sbjct: 189 EFFEPYGKIT--KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKG-EGKSLYVARAQK 245
Query: 210 KEERRARLQAQFSQMR 225
K ER+ L+ +F +++
Sbjct: 246 KAERQQELKRKFEELK 261
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 193/318 (60%), Gaps = 24/318 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
M++N +V+V + +++RE+ A K F NV+VKN+D T+E+ +++F ++G ITS
Sbjct: 202 MMLNGLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSI 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GK + FGFVN+EN + AAKAV+ LN +F ++ YVG+AQKK ER QELK Q+
Sbjct: 262 SMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+A E + K+QG+NL++KNL D+IDDE LK+ F FGTITS KVMR+ +G SKG GFV
Sbjct: 322 EEAKLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVC 381
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA+RA+ E N +++ KPLYVA+AQRK+ RR++L Q + +
Sbjct: 382 FSSPEEATRAITEKNQQIVAGKPLYVALAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 441
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIP-----PQ--AGFGYQQ-----QLVPGMRPAGAPMP- 285
P Q YG PP +P PQ AG QQ + GM P GA P
Sbjct: 442 AAAGIPGQFMQPMFYGVMPPRGVPFNGANPQQFAGMPPQQFRNGAPVYAGMPPQGAGAPP 501
Query: 286 ---NFFVPVVSQGQQGQR 300
FF QQ QR
Sbjct: 502 RNDQFF------AQQNQR 513
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S + D GKSK FGFV+FE A++A++A+
Sbjct: 140 NIFIKNLHADIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAI 199
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + E YV + +RE +FE A K N+Y+KN+ +E+ +
Sbjct: 200 NGMMLNGLEVYVAAHVSRKDRE----SKFEAA------KANFTNVYVKNVDLEATEEEFE 249
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF +FG ITS + +D G +G GFV + E A++A+ E+N S+ LYV AQ+
Sbjct: 250 ELFKKFGPITSISMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQK 309
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ + +
Sbjct: 310 KYERLQELKKQYEEAK 325
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 17/191 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V LD S ++ L IF G ++S V RD K+ + +VNF + D A+E
Sbjct: 52 SLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEK 111
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + G N++IKNL ID++ L
Sbjct: 112 LNYTPIKGKPCRIMWSQRDPSMRKNGSG----------------NIFIKNLHADIDNKAL 155
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D +G SKG GFV F AS A+ +NG M+ +YVA
Sbjct: 156 HDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHV 215
Query: 209 RKEERRARLQA 219
+++R ++ +A
Sbjct: 216 SRKDRESKFEA 226
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 61/148 (41%), Gaps = 35/148 (23%)
Query: 318 PIMPHQMPPRGHAYRYPLGRNMQDFP------FDMGAGSMLPVPVDM---GAGIP-RRDA 367
P+ MPPRG + G N Q F F GA PV M GAG P R D
Sbjct: 453 PMFYGVMPPRGVPFN---GANPQQFAGMPPQQFRNGA----PVYAGMPPQGAGAPPRNDQ 505
Query: 368 SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEV 425
Q + QR LGE LY V D AA K+TGM+L++ EV
Sbjct: 506 FFAQ----------------QNQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEV 549
Query: 426 LHLLESPEALKAKVAEAMEVLRSVAQQQ 453
+ LLE+ E + EA S ++Q
Sbjct: 550 MPLLENDELFEQHFKEAFAAYESFKKEQ 577
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/342 (39%), Positives = 185/342 (54%), Gaps = 77/342 (22%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R + +K F N++VKN+D TTD + +++F +YG ITSA
Sbjct: 204 MLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSA 263
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ D + GK++ FGFVN+ +DA KAVE LN F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 264 SLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQ 323
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR-----DPS---- 168
+E A +E K+ G+NLY+KNL D IDD++L+++F +G ITS KVMR D S
Sbjct: 324 YEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKVMRDTLPADGSETPA 383
Query: 169 ------------------------------------------GISKGSGFVAFSTPEEAS 186
G SKG GFV FS P+EA+
Sbjct: 384 KKEGDAEEKEAEPEKDGEKKDDVDDLSKKLDTVTIQGEKKLLGKSKGFGFVCFSNPDEAT 443
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 246
+A+ E+N KM+ KPLYVA+AQRKE R+++L+A V M
Sbjct: 444 KAVTELNQKMVHGKPLYVALAQRKEVRKSQLEASIQARNQVRM----------------- 486
Query: 247 LGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGA---PMP 285
QQ G PP + PQ G Q P M PAG PMP
Sbjct: 487 -QQQATAGGIPPQFMQPQMFMGPNGQ--PMMMPAGGRGQPMP 525
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ + KT NVF+KNLD + ++ L F +G I S V +D + SK +GFV++E
Sbjct: 130 QRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGYGFVHYE 189
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A +A++ +NG ++++ +VG K +R +E+K F N+
Sbjct: 190 TAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANF-------------TNI 236
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ D + +ELF ++G ITS + D SG ++G GFV + E+A +A+ E+N
Sbjct: 237 YVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELN 296
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 297 DSDFKGQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V LD S T+ L ++F G + S V RD +S + +VN+ A D +A+E L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQG----------------NVFIKNLDAAIDNKALH 158
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F+ FG I SCKV +D + SKG GFV + T E A++A+ +NG ++ K ++V
Sbjct: 159 DTFAAFGNILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIP 218
Query: 210 KEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 219 KKDRMSKVEEMKANFTNI 236
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/347 (42%), Positives = 189/347 (54%), Gaps = 43/347 (12%)
Query: 1 MLINDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ K+VFVG F ++ RE KF NV+VKN + E L+K+F +YG ITS
Sbjct: 210 MLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKETLEKLFAKYGAITSC 269
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VM DGKSK FGFV F ++A AV+ALN D D + +V +AQKKSER ELK
Sbjct: 270 DVMTS-DGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKK 328
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV------------- 163
+ EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KV
Sbjct: 329 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLFQ 388
Query: 164 -MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 222
M D +G SKG GFV F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+
Sbjct: 389 VMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYM 448
Query: 223 QMRPVAMGPSVPPRMPMYPPGPSGLG--------QQFLYGQAPPAIIPPQAGFGYQQQLV 274
Q S P MY P +G G QQ + P P +G Q Q
Sbjct: 449 QRLASMRMHSNVPGGGMYNPAQTGPGYYVANPMQQQRNFAGGPQIARPGGGRWGQQNQY- 507
Query: 275 PGMRPAGAPMPNFFV----PVVSQGQQGQRPGGRRGA--GPVQQTQQ 315
PM N ++ P V + G RP ++G GP QQ Q
Sbjct: 508 --------PMQNQYMMAQGPGVYPNRMG-RPQNQQGGPRGPPQQYSQ 545
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 24/221 (10%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-----------VVMRDGDG 66
+R+ ++ N+F+KNLD+ ++ + F +G I S VV D +G
Sbjct: 125 QRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEG 184
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
SK +GFV+FE + A A++ +NG ++ +VGK Q +++R +EL ET
Sbjct: 185 SSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL--------GETA 236
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
KF N+Y+KN GD + E L++LF+++G ITSC VM G SKG GFVAF+ PEEA
Sbjct: 237 KKF--TNVYVKNFGDHYNKETLEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAE 293
Query: 187 RALAEMNGKMIVSK--PLYVAVAQRKEERRARLQAQFSQMR 225
A+ +N + L+V AQ+K ER A L+ + Q +
Sbjct: 294 AAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHK 334
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 156/227 (68%), Gaps = 4/227 (1%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML++DK+VFVG F + +R E K+ NVF+KN + ++ L ++F +YG ITSA
Sbjct: 206 MLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSA 265
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKG 116
VVM D GK K FGFV F + D A KAV+ LN + D + V +AQKKSER ELK
Sbjct: 266 VVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKR 325
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
++E +E V ++QG+NLY+KN+ + + D+ L+E F+ FG+ITS KVM D +G SKG GF
Sbjct: 326 KYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGF 385
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
V F PEEA+ A+ EMN KMI +KPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 386 VCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 432
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 122/210 (58%), Gaps = 12/210 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A + N+F+KNLD ++ + F +G I S V D +G SK +GFV+FE
Sbjct: 132 QRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A A+E +NG D++ +VGK Q +++R +EL E +K T N++IK
Sbjct: 192 TEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELG---ESGLKYT-------NVFIK 241
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +D++KL E+FS++G ITS VM D SG KG GFVAF P+ A +A+ +N +
Sbjct: 242 NFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTL 301
Query: 198 VSKPLYVAV--AQRKEERRARLQAQFSQMR 225
L ++V AQ+K ER A L+ ++ ++
Sbjct: 302 EGTDLKLSVCRAQKKSERTAELKRKYEALK 331
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 433
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ +
Sbjct: 641 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDED 700
Query: 434 ALKAKVAEAMEVLRSVAQQQANNPA 458
++KV EA VL S AQ+ AN PA
Sbjct: 701 LFRSKVEEAFTVL-SNAQKNANGPA 724
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LYI +L + + L E FS G + S +V RD S +S G +V F P +A RAL
Sbjct: 56 SLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 115
Query: 192 MNGKMIVSKPLYVAVAQRK-EERRA 215
MN ++I +P+ + +QR RRA
Sbjct: 116 MNFEVIHGRPMRIMWSQRDPAARRA 140
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 172/491 (35%), Positives = 250/491 (50%), Gaps = 84/491 (17%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITS 57
M+I +K V+VG F + ER + KF NV++K+L ES TT+ED++K F E+G ITS
Sbjct: 185 MMIGEKAVYVGPFQKHAERAEQHGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITS 244
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE------------------- 98
+ D G+ F FVN+E+ D AAKAVEA+NGK +E
Sbjct: 245 VAIQTDRKGRR--FAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKGEEESTEEGSDEM 302
Query: 99 ----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 154
YV +AQ K+ER EL+ +F+ E V Q NLY+KNL + +DDEKL+++F +
Sbjct: 303 PEYKLYVTRAQTKTERSAELRNKFQAKNTEKVGN-QSCNLYVKNLPEDVDDEKLRQMFEQ 361
Query: 155 FGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
FG ITS KVM D +G+S+G GFV F+ + +A+ M+ K+ KPL+VAVA++++ R
Sbjct: 362 FGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLKLYGGKPLFVAVAEKRDAR 421
Query: 214 RARLQAQFSQMRPVA---------MGP---SVPPRMPMYPPGPSGLGQQFLYGQAPPAII 261
RLQ ++ P+ GP + P PMY G GQ +
Sbjct: 422 IERLQQRYRAGIPMGGFQQNYQGYRGPRNFNAPNPSPMYYSG----------GQNRQGGM 471
Query: 262 PPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMP 321
G+ M PM + PV +G RP G +MP
Sbjct: 472 MQGPPGGFVGGPRGPMGAQRGPMMSGGYPV----NRGPRPTGPN-------------MMP 514
Query: 322 HQMPPRGH---AYRYPLGRNMQDFPFDMGAGSMLP--VPVDMGAGIPRRDASVGQPMPIT 376
PPRG+ R+P Q PF G M P +P +P ++ P P+T
Sbjct: 515 MNQPPRGNFPPQQRFP---GQQGGPFMGQQGGMPPRMMPEQHNMPMPHQN-----PPPMT 566
Query: 377 ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 436
A ALA+A P Q+ +LGE L+ L+ + + A K+TGM+LEMD +E+L L++S + L+
Sbjct: 567 A--AALASAPPGLQKQMLGERLFTLISKYQPTLAGKITGMMLEMDNSELLMLIDSDQQLR 624
Query: 437 AKVAEAMEVLR 447
K+ EA+ VL+
Sbjct: 625 MKIDEAVRVLQ 635
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 36/216 (16%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNLD++ ++ L F +G I S V D DGKS+ +GFV+FEN + A KA+ L
Sbjct: 123 NVFVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKL 182
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEKL 148
NG ++ YVG QK +ER ++ ++ K T N+YIK+L +S +E +
Sbjct: 183 NGMMIGEKAVYVGPFQKHAERAEQ---HGDEPRKFT-------NVYIKHLPESWTTEEDV 232
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-------- 200
++ F EFG ITS + D G + FV + + A++A+ MNGK + ++
Sbjct: 233 QKAFEEFGKITSVAIQTDRKG--RRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGKG 290
Query: 201 ---------------PLYVAVAQRKEERRARLQAQF 221
LYV AQ K ER A L+ +F
Sbjct: 291 EEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKF 326
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAV 86
F +++V +L T+ L ++F G + S V RD +S + +VNF N DA +A+
Sbjct: 33 FASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERAL 92
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ LN ++ + + + T+ K N+++KNL +ID++
Sbjct: 93 DTLNYSPIRGKQCRIMWSHRDP----------------TLRKAGNANVFVKNLDKTIDNK 136
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKV D G S+G GFV F E A +A+ ++NG MI K +YV
Sbjct: 137 ALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGP 196
Query: 207 AQRKEER 213
Q+ ER
Sbjct: 197 FQKHAER 203
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 157/224 (70%), Gaps = 3/224 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+V+VG F+ ++ERE + K K F NV+VKN E DE LK+ F YG ITS
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKAQKKSEREQELKGQ 117
VM DGKSK FGFV FE + A AV+ALNGK + + YV +AQKK+ER+QELK +
Sbjct: 213 KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ ++ + G+NLY+KNL D+IDD++L+ FS +G ITS KVM D G SKG GFV
Sbjct: 273 FEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFV 332
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
F+ EA+ A+ E+NG+++ SKPLYVA+AQRKEER+A L +Q+
Sbjct: 333 CFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY 376
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDRAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 225/454 (49%), Gaps = 48/454 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
++ K+++VG F + ER A +T F NVFVKN + E L+++F ++G I S
Sbjct: 167 VIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSC 226
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKG 116
V DGDGK FGFV FEN DDA KAV+ + DR+ YV + QKK ER EL
Sbjct: 227 AVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDR 286
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+++ E +++G NLY+KNL D+IDD+ L+ F E+G + S KVMR G SKG GF
Sbjct: 287 KYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGF 346
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
V F P+EA +A+ M GKM+ +KPLYV++AQRKE+R+A + +Q+ Q R
Sbjct: 347 VCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQ------------R 394
Query: 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG---YQQQLVPGMRPAGAPMPNFFVPVVS 293
+ + G Y + P A +G Q+ + + A A M +
Sbjct: 395 IASIRMQATSFGSGMTYMSDSTVVQPLFACYGRGTLQRNMSNDV--AVATMVPGQHSWLQ 452
Query: 294 QGQQGQRPGGRRGAGPVQQTQQPL----PIMPHQMPPRGHAYR-YPLGRNMQDFPFDMGA 348
G + R G + QQ + IM RG P + +F
Sbjct: 453 MGDIDKSQTQRMAVGAMVYGQQNVRSQYAIMQSDGDCRGQTENPAPYSQTFSEFR----- 507
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
G M P VGQ P+T L+ + ++Q+ ++ E + PLV ++ +
Sbjct: 508 GYMAP--------------RVGQVEPLTP--HILSQLTVQKQKQVIAERICPLVPRIYKG 551
Query: 409 -AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
A K+ GMLLEMD E+L +L + L++++ E
Sbjct: 552 PDANKIMGMLLEMDNAELLMMLNNEGLLRSRINE 585
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL+ S + L F +G I S + D KSK +GFV FE + A KA++
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGT 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG F+ + YVG+ Q +SER EQA K T + F N+++KN D +D EKL+
Sbjct: 165 NGVIFEGKRIYVGRFQSRSERS-------EQA-KRTTNCFT--NVFVKNFADILDKEKLQ 214
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+LF++FG I SC V D G G GFVAF P++A +A+ +M + + LYV+
Sbjct: 215 QLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRF 274
Query: 208 QRKEERRARLQAQF 221
Q+K ER A L ++
Sbjct: 275 QKKCERLAELDRKY 288
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 22 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80
VA K +++V +L + L + F G + S V RD +S + +VNFE +
Sbjct: 9 VASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPE 68
Query: 81 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140
DA +A+E +N R + +Q++ + G N+++KNL
Sbjct: 69 DAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAG----------------NVFVKNLN 112
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
S++ + L FS FG I SCK+ D SKG GFV F T E A +A+ NG + K
Sbjct: 113 GSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGK 172
Query: 201 PLYVAVAQRKEER 213
+YV Q + ER
Sbjct: 173 RIYVGRFQSRSER 185
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 177
E A K+ + +LY+ +L +++ L E FS G + S +V RD + S G +V
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
F PE+A +AL MN ++ +P+ + +QR+
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRR 95
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 156/213 (73%), Gaps = 1/213 (0%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+++ K++FV F++K ER+ + +TKF NV+VKNL E T++ ++ F E+G + + V+M
Sbjct: 180 MLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIM 239
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+DG+GKS+ FGFVNFE+ D+A KAVEALNG ++ +VG+AQKK+ER++ LK + ++
Sbjct: 240 KDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEM 298
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ + K + NLY+KNL S+DD+KL+E FS G ITS KVMR SG+SKG GFV FST
Sbjct: 299 VNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFST 358
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
EEA +AL +NG ++ + LY+A+AQRKE+R+
Sbjct: 359 SEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQ 391
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 223/454 (49%), Gaps = 66/454 (14%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT N+FVKNLD S L+ IF ++G I S V + +GKSKCFGFV F++ D A
Sbjct: 113 KTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATA 171
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ ALN D ++ +V K KK ER++ A +ET KF N+Y+KNLG+ +
Sbjct: 172 ALNALNDTMLDGKKLFVSKFVKKCERKE--------ASEET--KFT--NVYVKNLGEDLT 219
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ +++ FSEFG + + +M+D +G S+G GFV F +P+EA +A+ +NG M+ SK L+V
Sbjct: 220 EDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS----GLGQQF-LYGQAPPA 259
AQ+K ER+ L+ + +M +G + + S L + F GQ A
Sbjct: 280 GRAQKKAERQELLKHE-KEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSA 338
Query: 260 IIPPQ-----AGFGY--------QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRG 306
+ GFG+ Q+ + + + ++ + + + QR
Sbjct: 339 KVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRI----- 393
Query: 307 AGPVQQTQQ-----------PLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
P++Q QQ ++P +G Y P + Q F +
Sbjct: 394 --PMKQAQQGNTNNWGYQQNSRTFATSKVPTQGLNYASP---SNQKLHFKKKGNN----- 443
Query: 356 VDMGAGIPRRDASVGQPMPIT--ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
G+ SV + I A S N+ + ++G LYPLV L+ + A K+
Sbjct: 444 -KSGSEEASSKGSVSEKHFIRAPAQSNVWGNS-----KEIIGHHLYPLVHSLQPELAGKI 497
Query: 414 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
TGMLLEM+ ++++ LL+SP++L +V +A++ L+
Sbjct: 498 TGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQALK 531
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 21/203 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +LD ++ +L +F G + S + RD GKS C+ +VNF DA+KA+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKL 148
N K +GK + + ++ + + GL NL++KNL SI+ L
Sbjct: 91 NHTKL------MGKPMR-----------IMWSHRDPLPRKTGLANLFVKNLDPSINSASL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV + +G SK GFV F + + A+ AL +N M+ K L+V+
Sbjct: 134 QDIFCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFV 192
Query: 209 RKEERR-ARLQAQFSQMRPVAMG 230
+K ER+ A + +F+ + +G
Sbjct: 193 KKCERKEASEETKFTNVYVKNLG 215
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 11/122 (9%)
Query: 2 LINDKQVFVGHF--------LRKQERETVAI---KTKFNNVFVKNLDESTTDEDLKKIFG 50
++ K++FVG L K E+E V K K +N++VKNLD S D+ L++ F
Sbjct: 271 MLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFS 330
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
G ITSA VMR G SK FGFV F +++A KA+ LNG R Y+ AQ+K +R
Sbjct: 331 SCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDR 390
Query: 111 EQ 112
++
Sbjct: 391 QR 392
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 163/230 (70%), Gaps = 1/230 (0%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+++ K++FV F++K ER+ + +TKF NV+VKNL E T++ ++ F E+G + + V+M
Sbjct: 180 MLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIM 239
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+DG+GKS+ FGFVNFE+ D+A KAVEALNG ++ +VG+AQKK+ER++ LK + ++
Sbjct: 240 KDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHE-KEM 298
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ + K + NLY+KNL S+DD+KL+E FS G ITS KVMR SG+SKG GFV FST
Sbjct: 299 VNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFST 358
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGP 231
EEA +AL +NG ++ + LY+A+AQRKE+R+ L+ +SQ GP
Sbjct: 359 SEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGP 408
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 126/203 (62%), Gaps = 13/203 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ + KT N+FVKNLD S L+ IF ++G I S V + +GKSKCFGFV F+
Sbjct: 106 HRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE-NGKSKCFGFVQFD 164
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A+ ALN D ++ +V K KK ER ++A +ET KF N+Y+K
Sbjct: 165 SDDSATAALNALNDTMLDGKKLFVSKFVKKCER--------KEASEET--KFT--NVYVK 212
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NLG+ + ++ +++ FSEFG + + +M+D +G S+G GFV F +P+EA +A+ +NG M+
Sbjct: 213 NLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAML 272
Query: 198 VSKPLYVAVAQRKEERRARLQAQ 220
SK L+V AQ+K ER+ L+ +
Sbjct: 273 GSKKLFVGRAQKKAERQELLKHE 295
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 108/203 (53%), Gaps = 21/203 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +LD ++ +L +F G + S + RD GKS C+ +VNF + DA+KA+ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKL 148
N K +GK + + ++ + + GL NL++KNL SI+ L
Sbjct: 91 NHTKL------MGKPMR-----------IMWSHRDPLPRKTGLANLFVKNLDPSINSASL 133
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV + +G SK GFV F + + A+ AL +N M+ K L+V+
Sbjct: 134 QDIFCKFGNILSCKVAEE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFV 192
Query: 209 RKEERR-ARLQAQFSQMRPVAMG 230
+K ER+ A + +F+ + +G
Sbjct: 193 KKCERKEASEETKFTNVYVKNLG 215
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 116/130 (89%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E DKFQG NLY+KNL DSIDD+KLK+LFS+FG+ITSCKVMRDP+GIS+GSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
F+TPEEASRA+ EMNGKM+VSKPL+VA+AQRKE+RRARLQAQFSQ+RPVAM PSV RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 239 MYPPGPSGLG 248
MYPP G G
Sbjct: 121 MYPPCGPGHG 130
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
+Q VA K + N+++KNLD+S D+ LK++F ++G+ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
F ++A++A+ +NGK + +V AQ+K +R L+ QF Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 157/218 (72%), Gaps = 4/218 (1%)
Query: 9 FVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
+VG F+ + +R E KF NV+VKN DE+ TD+ L +F ++G I S VVM++ D
Sbjct: 144 YVGKFIPRAQRMREIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKEDD- 202
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKET 125
KSK FGFV+FEN +DA AV+ +N + ++ YVG+AQKK+ER+ ELK ++E E
Sbjct: 203 KSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLER 262
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+ +++G+NLY+KNL DS+DD +L++ F +FG ITS KVM D G SKG GFV FS+P+EA
Sbjct: 263 IQQYEGVNLYLKNLDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEA 322
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+RA++EMN + + +KPLYVA+AQRKE+R+A+L +Q Q
Sbjct: 323 TRAVSEMNNQKLGNKPLYVALAQRKEDRKAQLASQLVQ 360
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 39/209 (18%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+ + + F +G I S V D +G SK +G
Sbjct: 89 QRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGNILSCKVATDENGVSKGYG----- 143
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
YVGK +++R +E+ ET KF N+Y+K
Sbjct: 144 ----------------------YVGKFIPRAQRMREI--------GETTRKF--TNVYVK 171
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N ++ D+ L +LFS+FG I SC VM++ SKG GFV+F PE+A A+ EMN +
Sbjct: 172 NFDENFTDQCLVDLFSKFGKIQSCVVMKEDDK-SKGFGFVSFENPEDAEAAVKEMNEYQL 230
Query: 198 VS-KPLYVAVAQRKEERRARLQAQFSQMR 225
S K LYV AQ+K ER+A L+ ++ ++
Sbjct: 231 PSGKKLYVGRAQKKAERQAELKRRYEMLK 259
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 51/65 (78%), Gaps = 2/65 (3%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+T S+ L++A P++Q+ +LGE L+PL+ ++ +D A K+TGMLLEMD E+L++LESP+
Sbjct: 558 PLT--SSMLSSAPPQEQKQMLGERLFPLIMEIHKDLAGKITGMLLEMDNGELLNMLESPD 615
Query: 434 ALKAK 438
L AK
Sbjct: 616 LLNAK 620
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 21 TVAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFE 77
T AI F +++V +L T+ L + F G + S V RD +S + +VN++
Sbjct: 2 TTAIAQNFAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQ 61
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
DA +A++ +N R + +Q+ + G N++IK
Sbjct: 62 QTPDAERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVG----------------NVFIK 105
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
NL ID + + + FS FG I SCKV D +G+SKG G+V P
Sbjct: 106 NLDKDIDHKAIYDTFSNFGNILSCKVATDENGVSKGYGYVGKFIP 150
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ +L + + L E FS G + S +V RD + S G +V + +A R
Sbjct: 9 FAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAER 68
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL MN + +P+ + +QR
Sbjct: 69 ALDTMNFDPVFGRPIRIMWSQR 90
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 164/259 (63%), Gaps = 31/259 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDE-DLKKIFGEYGTITSAV 59
MLI K V+VG F+R+ ER+ +A +TK+ NV++KN+ + DE L++ F +YG+ITS V
Sbjct: 235 MLIGGKTVYVGPFIRRAERDNLA-ETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLV 293
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD---------------------RE 98
V +D G+ F F NF + D A AVEALNGK+ D RE
Sbjct: 294 VRKDPKGR--LFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKRE 351
Query: 99 ----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 154
+VG Q K+ R L+ +FEQ ++ D+FQG+NLYIKN+ DSIDDEKL++LF
Sbjct: 352 GEQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEP 411
Query: 155 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
FG+ITS KVMRD G+S+ GFV F +PEEA++A+ EM+ K++ KPLYV +A+R+E+R
Sbjct: 412 FGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRL 471
Query: 215 ARLQAQFS--QMRPVAMGP 231
RLQ +F +RP A P
Sbjct: 472 MRLQQRFRLPSLRPAAALP 490
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 41/226 (18%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD++ ++ L F +G I S V D +G SK +GFV++EN + A
Sbjct: 168 KSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARS 227
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + YVG +++ER+ + ++ N+YIKN+ + +
Sbjct: 228 AIDKVNGMLIGGKTVYVGPFIRRAERDNLAETKYT-------------NVYIKNMPSAWE 274
Query: 145 DE-KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS---- 199
DE +L+E F+++G+ITS V +DP G + F F+ + A A+ +NGK +
Sbjct: 275 DEARLRETFAKYGSITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNGKRVTDAGAI 332
Query: 200 ---------------------KPLYVAVAQRKEERRARLQAQFSQM 224
+ L+V Q K R A L+A+F QM
Sbjct: 333 KEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAKFEQM 378
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E+F+ G +TS +V RD + S G +V + ++A R+L
Sbjct: 85 SLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDT 144
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + R
Sbjct: 145 LNYTVIKGQPCRIMWCHR 162
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/355 (41%), Positives = 205/355 (57%), Gaps = 44/355 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I DK+V+VGHF+R+ ER ++ + N++VKN +E L+K F +G ITS
Sbjct: 163 MTICDKEVYVGHFVRRTERSG---QSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKA 219
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNG-----------KKFDDREWYVGKAQKKSE 109
DG + FG+VNFE D A A++ALNG +VG+AQKK E
Sbjct: 220 AAAADGSA--FGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIE 277
Query: 110 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S 168
RE+ELK +F+ A E + K+QG+NL++KNL D +DD++L+E F+E+GTITS +VMR+P +
Sbjct: 278 RERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPAT 337
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR--- 225
G S+G GFV FS+PEEA++A+ EMN K+++ KP++VA+AQRKE RRA+L+AQ +Q R
Sbjct: 338 GTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRRTTA 397
Query: 226 -----PVAMGPS-VPPRMP--MYPP---GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLV 274
P AMGP+ VPP P ++P P G +Y P P G Q
Sbjct: 398 PYGAHPGAMGPAGVPPHAPQGLHPAHLGAPYGTAMPIMYAAGAPNGHP----MGMTPQGH 453
Query: 275 PGMRPAGAPMPNFFVPVVSQGQ-----QGQRPGGRRGAGPVQQTQQPLPIMPHQM 324
PG+ AG P PN V+++G R G G P Q P+ P QM
Sbjct: 454 PGVPIAGVP-PNARGYVMARGSPRGPMTDPRAGFGHGGAPRQGG---YPMHPGQM 504
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVFVKNLD S + L F +G I S V D G+S+ +G+V++E
Sbjct: 89 QRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYE 148
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A+ +N D+E YVG +++ER GQ + NLY+K
Sbjct: 149 SEDAATDAINKINSMTICDKEVYVGHFVRRTERS----GQSDWT-----------NLYVK 193
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--- 194
N D+E L++ F FG ITSCK G G+V F + A A+ +NG
Sbjct: 194 NFPADWDEETLRKAFETFGAITSCKAAAAADG--SAFGWVNFEAHDAAVAAMDALNGIAE 251
Query: 195 --------KMIVSKPLYVAVAQRKEERRARLQAQF 221
+ PL+V AQ+K ER L+A+F
Sbjct: 252 LPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKF 286
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L ++ L +IF G + S V RD +S + +VNF N DA +A++
Sbjct: 13 SLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDT 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ T+ K N+++KNL SID + L
Sbjct: 73 MNYTLIKSKPCRIMWSQRD----------------PTLRKSGVGNVFVKNLDASIDHKAL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D +G S+G G+V + + + A+ A+ ++N I K +YV
Sbjct: 117 FDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFV 176
Query: 209 RKEER 213
R+ ER
Sbjct: 177 RRTER 181
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ +L + L E+F+ G + S +V RD + S G +V F +A R
Sbjct: 9 FHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAER 68
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL MN +I SKP + +QR R
Sbjct: 69 ALDTMNYTLIKSKPCRIMWSQRDPTLR 95
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 136/180 (75%), Gaps = 1/180 (0%)
Query: 45 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104
L+++F E+G ITSA VM D +GKSK FGFV F++++ A AV+ALNGK F DR+ YVG+A
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 105 QKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
QKK+ER EL+ FE+ E ++ QG+NLY+KNL DSIDD +LK+ F FG ITS KV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
M D + SKG GFV FS PEEA++A+ EMNGK+ SKPLYVA+AQRKE+R+A L +Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 13/132 (9%)
Query: 2 LINDKQVFVGHFLRKQER-------------ETVAIKTKFNNVFVKNLDESTTDEDLKKI 48
+ D+Q++VG +K ER E + T+ N++VKNLD+S D LK+
Sbjct: 58 MFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQE 117
Query: 49 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108
F +G ITSA VM D + +SK FGFV F N ++A KAV +NGK + YV AQ+K
Sbjct: 118 FVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKE 177
Query: 109 EREQELKGQFEQ 120
+R+ L Q+ Q
Sbjct: 178 DRKAHLASQYMQ 189
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%)
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
KL+E+F EFG ITS KVM D +G SKG GFV F E A A+ +NGKM + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L++ F + R
Sbjct: 69 AQKKNERLDELRSHFEKQR 87
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ LA+A +Q+ +LGE LYPLV ++ + A K+TGMLLE+D TE+LH+LES ++L K+
Sbjct: 396 STLASAPIAEQKQMLGERLYPLVHRMYPELAGKITGMLLEIDNTELLHMLESEDSLTTKI 455
Query: 440 AEAMEVLRSVAQQ 452
EAM VL+S Q
Sbjct: 456 EEAMNVLQSHKNQ 468
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 150/204 (73%), Gaps = 3/204 (1%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ER E A +F NV++KN E DE LK+IF +YG S
Sbjct: 88 MLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPALSI 147
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 148 RVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKF 207
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 208 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 266
Query: 179 FSTPEEASRALAEMNGKMIVSKPL 202
FS+PEEA++A+ EMNG+++ +KPL
Sbjct: 267 FSSPEEATKAVTEMNGRIVATKPL 290
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 128/205 (62%), Gaps = 11/205 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 22 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 80
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ER E+ + ++ N+YIKN G+ +D
Sbjct: 81 AIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFT----------NVYIKNFGEDMD 130
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS++G S +VM D SG SKG GFV+F E+A RA+ EMNGK + K +YV
Sbjct: 131 DEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
Query: 205 AVAQRKEERRARLQAQFSQMRPVAM 229
AQ+K ER+ L+ +F QM+ M
Sbjct: 191 GRAQKKGERQTELKRKFEQMKQDRM 215
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 153/220 (69%), Gaps = 5/220 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D ++FVG F +++RE ++ K F NV+VKN + DE LK++F +YG S
Sbjct: 260 LLKDCRLFVGRFKNRKDREA-ELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSV 318
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NGK + + +VG+AQKKSER+ ELK F
Sbjct: 319 KVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMF 378
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL FS FG+I+ K+MR+ G SKG G +
Sbjct: 379 EQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLIC 437
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 218
FS+PEEA++A+AEMNG+++ SKPLY+A+AQR ER+ L
Sbjct: 438 FSSPEEATKAMAEMNGRILGSKPLYIALAQRPXERKNFLH 477
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D G S+ + FV+F+
Sbjct: 186 QRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQ 244
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N + A +A+E +NG D +VG+ + + +RE EL+ + V++F N+Y+K
Sbjct: 245 NQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNK--------VNEFT--NVYVK 294
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKE+FS++G S KVM D G SKG GFV+F + E A +A+ EMNGK +
Sbjct: 295 NFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDV 354
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V AQ+K ER+A L+ F Q++
Sbjct: 355 NGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
V K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 101 NVEAKYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKL 160
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 161 ADAQKALDTMN---FD-----------------MIKGKPIRLMWSQRDAYLRKSGIGNVF 200
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G S+G FV F A RA+ EMNG
Sbjct: 201 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGA 259
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
++ L+V + +++R A LQ + ++ V
Sbjct: 260 LLKDCRLFVGRFKNRKDREAELQNKVNEFTNV 291
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/453 (33%), Positives = 236/453 (52%), Gaps = 57/453 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI + QV V FLR+ ER T + F N++V+N ++ T++DL + F +YG ITS ++
Sbjct: 187 MLIGNSQVSVAPFLRRNER-TSTVGDVFTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLL 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQF 118
D G+ F FVNF + + A A+E NG KF+ E V + K+ R LK Q+
Sbjct: 246 KSDDKGRR--FAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQY 303
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ ++ +KF G+NLYIKNL D DD+ L++LF ++GT+TS KVMRD +G+S+G GFV
Sbjct: 304 DSNAQDQRNKFMGVNLYIKNLDDDFDDDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFVC 363
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS P+EA++A+A M+ K++ +KPLYV +A+++E+R +R+Q + Q + G P +P
Sbjct: 364 FSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQRASRMQQRNRQNDMMQYGDR-PGYVP 422
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
+YPP + PQ F +Q G RP P G
Sbjct: 423 LYPPE-----------------MVPQGYFNHQ----VGFRPTVPAQP-----------MG 450
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRN-MQDFPFDMGAGSMLPVPVD 357
P G R P+ PH R P+ + + F F A + +P
Sbjct: 451 VGPRGMRMVAPMPMMHGRGTASPHAA---AQGRRTPVKQVPLSGFKFTAQARNRTELP-- 505
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
G P +P+ A+ + ++GE L+P+V + + A K+TGM+
Sbjct: 506 --NGAPAAAVPTQRPIDGAAM-----------HKQMIGERLFPIVARENPELAGKITGMM 552
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
LEMD E++ LLE+ + LK K+ EAM VL+ +
Sbjct: 553 LEMDNQELMALLENEQQLKDKIQEAMRVLKQAS 585
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 105/207 (50%), Gaps = 27/207 (13%)
Query: 25 KTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADD 81
++ FN+ ++V NL T+ L ++F G + S V RD KS + +VN+ N D
Sbjct: 30 RSSFNSASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQD 89
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIK 137
A A+E LN Y+ E+KGQ + M D K N+++K
Sbjct: 90 AEAALECLN---------YI-----------EIKGQPARIMWSERDPSLRKSGTGNIFVK 129
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +ID + L + FS FGTI SCKV D G SKG GFV ++T E A A+ ++NG +I
Sbjct: 130 NLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLI 189
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQM 224
+ + VA R+ ER + + F+ +
Sbjct: 190 GNSQVSVAPFLRRNERTSTVGDVFTNL 216
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
ER+ K+ N+FVKNLD++ + L F +GTI S V D G SK +GFV++
Sbjct: 113 ERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYT 172
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG + + V +++ER + F NLY++
Sbjct: 173 TEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDVFT-------------NLYVR 219
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N D+ ++ L + FS++G ITS + D G + FV F A A+ NG
Sbjct: 220 NFPDTWTEDDLHQTFSKYGEITSLLLKSDDKG--RRFAFVNFVDTNMAKAAMEGENGVKF 277
Query: 198 --VSKPLYVAVAQRKEERRARLQAQF 221
V +P+ V K R A L+AQ+
Sbjct: 278 ESVEEPMMVCQHMDKARRYAMLKAQY 303
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 162/256 (63%), Gaps = 31/256 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED-LKKIFGEYGTITSAV 59
MLI K V+VG F+R+ ER+ +A + K+ NV++KN+ + DE L++ F ++G+ITS V
Sbjct: 234 MLIGGKTVYVGPFIRRAERDNLA-EAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLV 292
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD---------------------RE 98
V +D G+ F F NF + D A AVEALNGK+ D RE
Sbjct: 293 VRKDPKGR--LFAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKRE 350
Query: 99 ----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 154
+VG Q K+ R L+ +FEQ ++ D+FQG+NLYIKN+ DSIDDEKL++LF
Sbjct: 351 GDQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEP 410
Query: 155 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
FG+ITS KVMRD G+S+ GFV F +PEEA++A+ EM+ K++ KPLYV +A+R+E+R
Sbjct: 411 FGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRL 470
Query: 215 ARLQAQFS--QMRPVA 228
RLQ +F +RP A
Sbjct: 471 MRLQQRFRLPSLRPAA 486
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 41/226 (18%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD++ ++ L F +G I S V D +G SK +GFV++EN + A
Sbjct: 167 KSGNGNIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARS 226
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + YVG +++ER+ + ++ N+YIKN+ + +
Sbjct: 227 AIDKVNGMLIGGKTVYVGPFIRRAERDNLAEAKYT-------------NVYIKNMPSAWE 273
Query: 145 DE-KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV----- 198
DE +L+E FS+FG+ITS V +DP G + F F+ + A A+ +NGK +
Sbjct: 274 DESRLRETFSKFGSITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNGKRVTDAGAI 331
Query: 199 --------------------SKPLYVAVAQRKEERRARLQAQFSQM 224
+ L+V Q K R A L+A+F QM
Sbjct: 332 KEGEDSGAEEKEEEGQKREGDQILFVGPHQSKAHRSAMLRAKFEQM 377
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 387 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
P Q+ +LGE L+PL+ + + + A K+TGM+LEMD E+L LLES LKAKV EA+ VL
Sbjct: 705 PSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRVL 764
Query: 447 RSVA 450
+ +
Sbjct: 765 QQAS 768
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
M F +LY+ +L + + L E+F+ G +TS +V RD + S G +V +
Sbjct: 73 MNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQ 132
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209
++A R+L +N +I +P + R
Sbjct: 133 GIQDAERSLDTLNYTVIKGQPCRIMWCHR 161
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 152/217 (70%), Gaps = 5/217 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D ++FVG F +++RE ++ K F NV++KN + DE LK++F +YG S
Sbjct: 260 LLKDCRLFVGRFKNRKDREA-ELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSV 318
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NGK + + +VG+AQKKSER+ ELK F
Sbjct: 319 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVF 378
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL FS FG+I+ K+MR+ G SKG G +
Sbjct: 379 EQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLIC 437
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 215
FS+PEEA++A+AEMNG+++ SKPLY+A+AQ+ ER A
Sbjct: 438 FSSPEEATKAMAEMNGRILGSKPLYIALAQKPXERNA 474
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 130/212 (61%), Gaps = 11/212 (5%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
L +R+ K+ NVF+KNLD S ++ L + F +G I S+ VM D G S+ + F
Sbjct: 182 LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAF 240
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
V+F+N A +A+E +NG D +VG+ + + +RE EL+ + ++F N
Sbjct: 241 VHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNK--------ANEFT--N 290
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
+YIKN GD +DDE+LKE+FS++G S KVM D SG SKG GFV+F + E A +A+ EMN
Sbjct: 291 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 350
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
GK I + L+V AQ+K ER+A L+ F Q++
Sbjct: 351 GKDINGQLLFVGRAQKKSERQAELKQVFEQLK 382
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
VA K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 101 NVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKL 160
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA +A++ +N FD +KG+ + M D + G+ N++
Sbjct: 161 ADAQRALDTMN---FD-----------------TIKGKPIRLMWSQRDAYLRKSGIGNVF 200
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G S+G FV F A RA+ EMNG
Sbjct: 201 IKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGA 259
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ L+V + +++R A L+ + ++ V +
Sbjct: 260 LLKDCRLFVGRFKNRKDREAELRNKANEFTNVYI 293
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 113/130 (86%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQA E DKFQG NLY+KNL SIDD+KLK+LFS+FG+ITSCKVMRDP+GIS+GSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
F+TPEEASRA+ EMNGKM+V KPLYVA+AQRKE RRARLQAQFSQ+RPVAM PSV RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 239 MYPPGPSGLG 248
MYPP G G
Sbjct: 121 MYPPCGPGHG 130
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
+Q VA K + N+++KNLD S D+ LK++F ++G+ITS VMRD +G S+ GFV
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
F ++A++A+ +NGK + YV AQ+K R L+ QF Q
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/246 (44%), Positives = 162/246 (65%), Gaps = 7/246 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
++ +K+++V F++K ER T + KF N++VKNL + T + +F +G I SAV
Sbjct: 170 MLKEKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAV 229
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
+M+D +GKS+ FGFV+FE+ +DA KAV+ALNG + + R +VG+AQ K+ER++ L+ +++
Sbjct: 230 IMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYK 289
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
++KF+ NLY+KNL ID++KL+ELFS G I S KVMR +G S+G GFV F
Sbjct: 290 DIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYDNGASRGFGFVCF 349
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS--QMRPVAMGPSV---P 234
S+PEEA +AL +NG + K LYVA+AQ K +R+ LQ FS Q +P + S P
Sbjct: 350 SSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLALQTYFSVPQSQPPYLSDSSVVPP 409
Query: 235 PRMPMY 240
P P+Y
Sbjct: 410 PISPVY 415
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 117/212 (55%), Gaps = 11/212 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R A K+ N++VKNLD S L+ +F ++GTI S V+ + GKSK +GFV F+
Sbjct: 96 QRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVVEE-HGKSKGYGFVQFD 154
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A AL+ +++ YV + KKSER + D+ + NLY+K
Sbjct: 155 SEDSALAARTALHDTMLKEKKLYVSRFVKKSER----------TTATSYDELKFTNLYVK 204
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + + +FS FG I S +M+D +G S+G GFV F +PE+A +A+ +NG +
Sbjct: 205 NLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQL 264
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
S+ L+V AQ K ER+ LQ ++ + M
Sbjct: 265 ESRTLFVGRAQAKAERKKILQHEYKDIFNTHM 296
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 26/189 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD T+ +L+ +F G I + + R G+S C+G+VNF DA KA+
Sbjct: 20 SLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSN 79
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM---KETVDKFQGL-NLYIKNLGDSID 144
LN LKG+ + M + + G+ NLY+KNL SID
Sbjct: 80 LN--------------------HTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASID 119
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
L+ LFS+FGTI SCKV+ + G SKG GFV F + + A A ++ M+ K LYV
Sbjct: 120 SAGLQSLFSKFGTILSCKVVEE-HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYV 178
Query: 205 AVAQRKEER 213
+ +K ER
Sbjct: 179 SRFVKKSER 187
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/261 (48%), Positives = 167/261 (63%), Gaps = 25/261 (9%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
F NV+VK+ + DE LK++F +YGTITS VM DGK + FGFV FEN + A AV+
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQ 64
Query: 88 ALNGKKFDD-REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LNGK+ + + YVG+AQKK+ER+ ELK +FEQ E + ++QG+NLY+KNL DSIDDE
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS-TPEEASRALAEMNGKMIVSKPLYVA 205
+L++ FS FGTITS KVM + G SKG GFV FS EEA++A+ EMNG+++ SKPLYVA
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 206 VAQRKEERRARLQAQFSQ----MRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAII 261
+AQR E+R+A L +Q+ Q MR MG ++ PG +G G P +
Sbjct: 184 LAQRTEDRKAHLASQYMQRMANMRMQHMG-------QIFQPGGNG-------GYYVPTLP 229
Query: 262 PPQAGFGYQQ---QLVPGMRP 279
PQ F Q + PG P
Sbjct: 230 QPQRFFSKQVSQIRTTPGWLP 250
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 166/249 (66%), Gaps = 4/249 (1%)
Query: 2 LINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +++VFVG F R ++E E A +F NV+VKN + TTDE L +IF +YG ++S
Sbjct: 170 LVKERKVFVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVK 229
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
+M D GKSK FGF+ FE DA +A+E +NGK+F R+ YV +AQKK ERE+EL+ + E
Sbjct: 230 IMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLE 289
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ + + K+ G++L++KNL +S DDE L+++F+ FGT+TS KV+ G KG GFV+F
Sbjct: 290 EIKQNRIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVTSAKVIVK-GGRRKGFGFVSF 348
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV-AMGPSVPPRMP 238
S+ EEA +A+ EM+GKM+ ++PLYV+ A+ K+ERRA + + + + A PS P P
Sbjct: 349 SSREEAKKAVEEMHGKMLSARPLYVSYARYKQERRAYFASYYGKKKASPAKSPSTPDTSP 408
Query: 239 MYPPGPSGL 247
P P G
Sbjct: 409 SQPASPDGF 417
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 114/184 (61%), Gaps = 11/184 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFV +LD S +++L +F +GTI S V+ D +G K GFV+FE + A KA++ +
Sbjct: 108 NVFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEM 166
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +R+ +VG+ ++ ++RE+E + + EQ N+Y+KN D DE L
Sbjct: 167 NGSLVKERKVFVGQFKRPNQREEERRAKMEQFT----------NVYVKNFADGTTDEYLL 216
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+FS++G ++S K+M D SG SKG GF+ F +A RA+ E+NGK + +YV+ AQ+
Sbjct: 217 EIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQK 276
Query: 210 KEER 213
K+ER
Sbjct: 277 KKER 280
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 31/204 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S +G+VNF +DA A+
Sbjct: 20 SLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNT 79
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD L G+ + M D + G+ N+++ +L SID
Sbjct: 80 MN---FD-----------------VLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASID 119
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+++L +LF+ FGTI SCKV+ D +G KG GFV F T E A +A+ EMNG ++ + ++V
Sbjct: 120 NKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFV 178
Query: 205 AV----AQRKEERRARLQAQFSQM 224
QR+EERRA+++ QF+ +
Sbjct: 179 GQFKRPNQREEERRAKME-QFTNV 201
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 57/77 (74%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ L +ASPE Q+ +LGE L+PL++ L+ A+K+ GMLLEMD +E+L LLESPE+ +
Sbjct: 561 ITSTLVSASPEDQKKILGEWLFPLIQALQPTLASKIMGMLLEMDNSELLLLLESPESFCS 620
Query: 438 KVAEAMEVLRSVAQQQA 454
KV EA+ VL + QQA
Sbjct: 621 KVDEAVAVLEACQAQQA 637
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LY+ +L + + L E FS G I S +V RD S S G G+V F PE+A
Sbjct: 16 FPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGH 75
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL MN ++ KP+ + R
Sbjct: 76 ALNTMNFDVLHGKPVRIMWCHR 97
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 158/483 (32%), Positives = 235/483 (48%), Gaps = 100/483 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q + + P G + +
Sbjct: 281 EQMKQDRLRRYQ-------------------------LSRGPAQCWAWPVGRREAAQPQE 315
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
S P A+ A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 316 PSFPTPAALAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 375
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ------------------- 272
P P P Q YG P + P Q + Q
Sbjct: 376 FQQPSSYFLPAVPQPPAQAAYYGCGP--VTPTQPAPRWTSQPPRPSCASMVRPPVVPRRP 433
Query: 273 LVP--GMRPAGAPMPNFFVP----VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP 326
L P +R A +P VP V + G Q PGG P + P++P++ P
Sbjct: 434 LAPISSVRQASTQVPR-TVPHTQRVANIGTQTTGPGGVGCCTPGR------PLLPYKCSP 486
Query: 327 RGHA-YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 385
H+ YR + IP ++ P+TA + LA A
Sbjct: 487 AAHSTYRVQ----------------------EPAVHIPGQE-------PLTA--SMLAAA 515
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ V
Sbjct: 516 PLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAV 575
Query: 446 LRS 448
L++
Sbjct: 576 LQA 578
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL + A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGAR---ALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRMERQNELKRRFEQMK 284
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 176/577 (30%), Positives = 262/577 (45%), Gaps = 151/577 (26%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M++ D+ ++VG F RK ER + KT F NV+VK++ ++ ++E L +FG YG I+S V+
Sbjct: 163 MILGDRPIYVGKFQRKAERFSEKDKT-FTNVYVKHIPKTWSEETLHTLFGVYGKISSLVL 221
Query: 61 MRDGDGKSKCFGFV-------------NFENA---------------------DDAA--- 83
D G+ FGFV N NA DD
Sbjct: 222 QSDSKGRP--FGFVNFEDPESAKKAVANLHNALVTPLGVELNSNNSERTESGKDDGLSSI 279
Query: 84 --------KAVEALNGKKFDDRE-------------------------WYVGKAQKKSER 110
+ VE+ + K+ +D+E YV +AQK++ER
Sbjct: 280 SSNTESSDETVESNDYKQRNDKEDPQEADVEKNSDEENSVPFDVQPNRLYVSRAQKRNER 339
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
+ LK Q E A +E+ +++QG+NLY+KNL +S+ + L+ LF +GTI+S + D SGI
Sbjct: 340 QVVLKSQHE-AARESQNRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGI 398
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF--SQMRPVA 228
S+G GFV+F +P+EA++A+ EM+ K++ KPLYV + +RKE+R RLQ + + PV
Sbjct: 399 SRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQRIRGGTVPPVL 458
Query: 229 -----------------MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI----------- 260
M PP+M P P+ + P +
Sbjct: 459 RPGTIPPGPPTAVHGAPMQFGAPPQMYFIPGNPAVAATAGMQHNRTPMVGSFPNQGVMAS 518
Query: 261 ---------------IPPQA---GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG 302
+PPQ GY PG+ G P N +P G Q P
Sbjct: 519 PWRPNPTRIPYGTGALPPQMTAQSVGYN----PGVN--GIPSNNGSIP--QTGPQSVNPA 570
Query: 303 GR-RGAGPVQQTQQ--------PLPIMPHQMPPRGHAYRYPLGRNMQDFP-FDM---GAG 349
R G Q+ P HQ+ ++++P D P DM G
Sbjct: 571 QNIRTGGNSQRIHNRHMQGQGGSRPTHGHQVQIPKQSFKFPSHIKTSDQPRVDMIPGGLV 630
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
+M P + IP+ D +P+TA + LA ASP Q+ LLGE L+P++ Q + +
Sbjct: 631 NMDPSGISSVPMIPQSD------IPLTA--STLATASPSMQKQLLGERLFPIIAQYQPEL 682
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
A K+TGM+LEMD E+L +L S +K KV EAM VL
Sbjct: 683 AGKITGMMLEMDNNELLEILNSDAEIKNKVDEAMIVL 719
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 17/195 (8%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + + NVFVKNLD+S ++ L F +G I S + D +G S +GF++FE+
Sbjct: 90 RDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEH 149
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ A +A+ LNG DR YVGK Q+K+ER E F N+Y+K+
Sbjct: 150 PESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKTF-------------TNVYVKH 196
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+ + +E L LF +G I+S + D G + GFV F PE A +A+A ++ ++
Sbjct: 197 IPKTWSEETLHTLFGVYGKISSLVLQSDSKG--RPFGFVNFEDPESAKKAVANLHNALVT 254
Query: 199 SKPLYVAVAQRKEER 213
PL V + ER
Sbjct: 255 --PLGVELNSNNSER 267
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 17/196 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD T+ L +IF ++S + RD +S + +VN+ + DA +A++
Sbjct: 13 SLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDT 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + + + +G N+++KNL SID++ L
Sbjct: 73 LNFTCIRSRPCRIMWCLRDPASRRNNEG----------------NVFVKNLDKSIDNKTL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D G S G GF+ F PE A A+A +NG ++ +P+YV Q
Sbjct: 117 FDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQ 176
Query: 209 RKEERRARLQAQFSQM 224
RK ER + F+ +
Sbjct: 177 RKAERFSEKDKTFTNV 192
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 128/168 (76%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+DES +DE+ K+F YG + SA
Sbjct: 212 MLLNDKKVFVGHHIAKRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSA 271
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + + AAKAVE LN K+F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 272 TITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQY 331
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D +DD+KL+ELFS +GTITS KVMRD
Sbjct: 332 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFSSYGTITSAKVMRD 379
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 122/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F ++G I S V +D G SK +GFV++E
Sbjct: 138 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A +A++++NG +D++ +VG K +R+ +E+K F N+
Sbjct: 198 TAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANF-------------TNV 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ +S+ DE+ +LF +G + S + RD +G S+G GFV F++ E A++A+ E+N
Sbjct: 245 YIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELND 304
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K K LYV AQ+K ER L+ Q+ R
Sbjct: 305 KEFHGKKLYVGRAQKKHEREEELRRQYEAAR 335
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 156/325 (48%), Gaps = 66/325 (20%)
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G SKG GFV FS P+EAS+A++EMN KM+ KPLYVA+AQRK+ RR +L+A +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEASIQARNTLR 499
Query: 229 MGPSVPPR-MPMYPPGPSGL--GQQFLYGQAPPAIIPPQAGFGYQQQ---LVPGMR---- 278
MP P+ GQQFL PP Q G + Q ++PGM+
Sbjct: 500 QQQQAAAAGMPQGYIQPTVFYPGQQFL----PPGA---QRGMPFAGQPGMVIPGMQGGRG 552
Query: 279 --PAGAPM------------PNFFVP----------VVS------------QGQQGQRPG 302
P G P PNF +P +V+ QGQ G+ G
Sbjct: 553 QFPGGFPQGGRGIPQGQQLPPNFGLPGQMPFIQNPALVNGMYNNPQALAQMQGQMGRGAG 612
Query: 303 GRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLG--RNMQDFPFDMGAGSMLPVPVDMGA 360
GR Q Q +P M +P G MQ+ P GAG + P G
Sbjct: 613 GR----GQMQGMQGMPPNMQGMGGMRGGPNFPQGGRGGMQNIPGGQGAGRI--PPQGRGQ 666
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
IP R+ + P + LA+ QQ+ +LGE++YP ++Q++ + A K+TGMLLEM
Sbjct: 667 MIPNRE-EINTPSSL----HNLASLPQSQQKQILGEAIYPKIQQIQPELAGKITGMLLEM 721
Query: 421 DQTEVLHLLESPEALKAKVAEAMEV 445
D +E+L L++ AL++KV EA+ V
Sbjct: 722 DNSELLSLVDDDAALRSKVDEALRV 746
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 121
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N I +P + +QR
Sbjct: 122 LNYTSIKGRPCRIMWSQR 139
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 151/225 (67%), Gaps = 6/225 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
+ D +VFVG F +++RE ++ K F NV++KN E DE LK++F +YG S
Sbjct: 133 LKDCKVFVGRFKNRKDREA-ELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVK 191
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F+N + A KAV+ +NGK + + +VG+AQKK ER+ ELK FE
Sbjct: 192 VMTDSSGKSKGFGFVSFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFE 251
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q KE + QG+ LYIKNL D+IDDEKL++ FS FG+I+ KVM++ G SKG G + F
Sbjct: 252 QLKKERIHGCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQE-GGQSKGFGLICF 310
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRK-EERRARLQAQFSQ 223
S+ EEA++A+ EMNG ++ SKPL +A+A R ER+ L Q+ Q
Sbjct: 311 SSLEEATKAMTEMNGHILGSKPLSIALAHRHYXERKIYLTRQYLQ 355
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 106/170 (62%), Gaps = 17/170 (10%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK---G 116
VM D G SK + FV+F+N A +A+E +NG++ D + +VG+ + + +RE EL+ G
Sbjct: 100 VMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNKAG 158
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+F N+YIKN G+ +DDEKLKE+FS++G S KVM D SG SKG GF
Sbjct: 159 EFT-------------NVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGF 205
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 226
V+F E A +A+ EMNGK I + ++V AQ+K ER+A L+ F Q++
Sbjct: 206 VSFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKK 255
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 216/407 (53%), Gaps = 64/407 (15%)
Query: 84 KAVEALNGKKFD---DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140
K E+ G ++D + GK+ KK+ER+Q L+ E+ E + K G N+YIKN+
Sbjct: 6 KCQESKRGLEWDRSGSENFVRGKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVYIKNIS 65
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
D +DD+ L+E F+EFG ITS K+MRD GISKG GFV +STP+EA A++ M G M K
Sbjct: 66 DEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGVMFYGK 125
Query: 201 PLYVAVAQRKEERRARLQAQFSQMRPVA--MGPSVPPRMP---------MYPPGPSGLGQ 249
PLYVA+AQRKE+R+ARL+ +F+++ +A P +P P +P GPS G
Sbjct: 126 PLYVAIAQRKEDRKARLEQRFAELATMAGTASPVIPTGYPHVYFAHPSTHFPQGPSRQG- 184
Query: 250 QFLYGQAPPAIIPPQAGFG--YQQQLVP---GMRPAGAP-MPNFFVPVVSQGQQGQRPGG 303
F+Y P G G ++Q + P ++ AP MPN P + +G+ G
Sbjct: 185 -FMY---------PPIGLGQEWRQNVYPSPHSIQQIHAPLMPN--TPRQYRNNRGRMTGN 232
Query: 304 RRGAGPVQQTQQPLPIMPHQMPPRGH--AYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG 361
+ PH + H A + + + Q F G +P P + G
Sbjct: 233 -------------MMTFPHAVNYVSHPQAAKDFMSMSRQQF----GHAKYIP-PDVVSNG 274
Query: 362 IPRRDASVGQPMPITALSTA----LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGML 417
+ ++ PI++++ + LA A P+QQR +LG +YPLVE+ D A+K+TGML
Sbjct: 275 L-----AIHHSGPISSVNDSFASLLAAAPPDQQRDMLGNRIYPLVERYHPDLASKITGML 329
Query: 418 LEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
LE+D + +L +L S + L AKV E ++ L+ QQ N + L +L
Sbjct: 330 LELDTSYLLSMLNSQDTLAAKVNECVQALQ--GQQSTKNKPEDLEAL 374
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 13 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 72
L +++R + K+ +NV++KN+ + D+ L++ F E+G ITS +MRD G SK FG
Sbjct: 41 LLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFG 100
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
FV + D+A AV ++ G F + YV AQ+K +R+ L+ +F +
Sbjct: 101 FVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAE 148
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 149/211 (70%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D +VFVG F +++RE ++ K F NV++KN + DE L+++F +YG S
Sbjct: 161 LLKDCKVFVGRFKNRKDREA-ELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F+N + A KAVE +NGK + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + K QG+ LYIKNL D+IDDEKL++ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PEEA++A+ EMNG+++ SKPL +A++Q+
Sbjct: 339 FSSPEEATKAMTEMNGQILGSKPLNIALSQK 369
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK D + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNKASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+L+E+FS++G S KVM DPSG SKG GFV+F E A +A+ EMNGK I
Sbjct: 196 NFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q +
Sbjct: 256 NGQLIFVGRAQKKVERQAELKQMFEQQK 283
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 24/213 (11%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
V K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 2 NVEAKYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGL-NLYI 136
DA KA++ +N FD GK+ + S+R+ L+ G+ N++I
Sbjct: 62 ADAQKALDTMN---FD---MIKGKSIRLMWSQRDACLRKS-------------GIGNVFI 102
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK+
Sbjct: 103 KNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKL 161
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ ++V + +++R A L+ + S+ V +
Sbjct: 162 LKDCKVFVGRFKNRKDREAELRNKASEFTNVYI 194
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 149/211 (70%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D ++FVG F +++RE ++ K F NV++KN + DE LK++F +YG S
Sbjct: 161 LLKDCRLFVGRFKNRKDREA-ELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD GKSK FGFV+F++ + A KAVE +NGK + + +VG+AQKK+ER+ ELK F
Sbjct: 220 KVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL ++IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PEEA++A+ EMNG+++ SKPL +A+AQ+
Sbjct: 339 FSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 131/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D G S+ + FV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG D +VG+ + + +RE EL+ + ++F N+YIK
Sbjct: 146 NQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNK--------ANEFT--NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKE+FS++G S KVMRD SG SKG GFV+F + E A +A+ EMNGK I
Sbjct: 196 NFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLLFVGRAQKKAERQAELKQMFEQLK 283
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
+A K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 2 NIAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------LIKGKSIRLMWSQRDAYLRKSGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G S+G FV F A RA+ EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGA 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ L+V + +++R A LQ + ++ V +
Sbjct: 161 LLKDCRLFVGRFKNRKDREAELQNKANEFTNVYI 194
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 156/414 (37%), Positives = 204/414 (49%), Gaps = 105/414 (25%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKNL+ T+E+ +++F +YG ITSA
Sbjct: 205 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSA 264
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF N D AA AVE LN K++ ++ YVG+AQKK ERE+EL+ Q
Sbjct: 265 SLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQ 324
Query: 118 FEQAMKETVDKFQGLNLYIKNLG-------------------------DSIDD------- 145
E A E K+QG+NLY+KNL D+I D
Sbjct: 325 HEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTISDAGSESEK 384
Query: 146 --------------EKLKELFSEFGTITSCKV----MRDPS----GISKGSGFVAFSTPE 183
E KE E + K + P+ G SKG GFV FS P+
Sbjct: 385 EKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPD 444
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQMRPVAMGPSVPPR 236
EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q A G S P
Sbjct: 445 EASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFM 504
Query: 237 MP--MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQ 294
P YPPG G IP A G GM A A P +P +
Sbjct: 505 QPAVYYPPGQQGF-------------IPANAQRG-------GM--AFAQQPGMVLPGMPG 542
Query: 295 GQQGQRP------GGRRGAGPVQQT--------QQPLPIMPHQMP---PRGHAY 331
G+ GQ P GGR AGP QQ Q LPI Q P P G Y
Sbjct: 543 GRPGQYPGGFPQQGGRGLAGPNQQLPPNAFGLGAQGLPIGALQGPGGIPNGLTY 596
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KNL + +E+ +ELF ++G ITS + RD +G S+G GFV F + A+ A+ ++N
Sbjct: 238 YVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q R
Sbjct: 298 DKEYKGQKLYVGRAQKKHEREEELRKQHEAAR 329
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 115 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDTAIDNKAL 158
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 218
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 219 AKKDRQSKFEEMKANFTNVYVKNLEPEV 246
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 143/227 (62%), Gaps = 4/227 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
++ K+++VG F + ER A +T F NVFVKN + E L+++F ++G I S
Sbjct: 167 VIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKIVSC 226
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKG 116
V DGDGK FGFV FEN DDA KAV+ + DR+ YV + QKK ER EL
Sbjct: 227 AVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDR 286
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+++ E +++G NLY+KNL D+IDD+ L+ F E+G + S KVMR G SKG GF
Sbjct: 287 KYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGF 346
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
V F P+EA +A+ M GKM+ +KPLYV++AQRKE+R+A + +Q+ Q
Sbjct: 347 VCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQ 393
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL+ S + L F +G I S + D KSK +GFV FE + A KA++
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGT 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG F+ + YVG+ Q +SER EQA K T + F N+++KN D +D EKL+
Sbjct: 165 NGVIFEGKRIYVGRFQSRSERS-------EQA-KRTTNCF--TNVFVKNFADILDKEKLQ 214
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+LF++FG I SC V D G G GFVAF P++A +A+ +M + + LYV+
Sbjct: 215 QLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRF 274
Query: 208 QRKEERRARLQAQF 221
Q+K ER A L ++
Sbjct: 275 QKKCERLAELDRKY 288
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 22 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80
VA K +++V +L + L + F G + S V RD +S + +VNFE +
Sbjct: 9 VASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPE 68
Query: 81 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140
DA +A+E +N R + +Q++ + G N+++KNL
Sbjct: 69 DAKQALETMNFDIVHGRPIRIMWSQRRPSTSRVAAG----------------NVFVKNLN 112
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200
S++ + L FS FG I SCK+ D SKG GFV F T E A +A+ NG + K
Sbjct: 113 GSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGK 172
Query: 201 PLYVAVAQRKEER 213
+YV Q + ER
Sbjct: 173 RIYVGRFQSRSER 185
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 177
E A K+ + +LY+ +L +++ L E FS G + S +V RD + S G +V
Sbjct: 3 EMADKDVASSAKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYV 62
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
F PE+A +AL MN ++ +P+ + +QR+
Sbjct: 63 NFERPEDAKQALETMNFDIVHGRPIRIMWSQRR 95
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 149/243 (61%), Gaps = 48/243 (19%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA-- 82
K+ N+F+KNLD+S ++ L F +G I S V+ D G S+ FGFV+FE + A
Sbjct: 95 KSGVGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQ 153
Query: 83 --------------------------------------------AKAVEALNGKKFDDRE 98
A+AV ++NGK+ + R
Sbjct: 154 AISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRV 213
Query: 99 WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 158
YVG+AQK++ER+ ELK +FEQ +E V+++QG+NLY+KNL D IDDEKL++ FS +GTI
Sbjct: 214 LYVGRAQKRTERQSELKRKFEQIKQERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTI 273
Query: 159 TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 218
TS KVM + SG SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L
Sbjct: 274 TSAKVMTE-SGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILT 332
Query: 219 AQF 221
Q+
Sbjct: 333 NQY 335
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G+I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NIFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ FS FG I SCKV+ D G S+G GFV F T E AS+A++ MNG ++
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLL 163
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 15/129 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N + ++VG ++ ER++ +K KF N++VKNLD+ DE L+K F
Sbjct: 209 LNGRVLYVGRAQKRTERQS-ELKRKFEQIKQERVNRYQGVNLYVKNLDDCIDDEKLRKEF 267
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
YGTITSA VM + G SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 268 SPYGTITSAKVMTE-SGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 326
Query: 110 REQELKGQF 118
R+ L Q+
Sbjct: 327 RKAILTNQY 335
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G+I S +V RD S S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++I +P+ + +QR
Sbjct: 72 MNFEVIKGRPIRIMWSQR 89
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 160/257 (62%), Gaps = 5/257 (1%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+++ K++FV F+ K ER +A F NV+VKNL E+ T++ L ++F +YGT++S VVM
Sbjct: 173 MVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVM 232
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDG G+S+ FGFVNF + ++A KAV++L+G++ + +VGKA K+ ER + LK ++
Sbjct: 233 RDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKYRDN 292
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ + NLY+KNL +S++D L+E+F +G I S KVMR +G SKG GFV FS
Sbjct: 293 FIAKSN-MRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSN 351
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-SQMRPVAMGPSVP-PRMPM 239
EE+ +A +NG + K L V VA+RKE+R RLQ F +Q R P VP P P+
Sbjct: 352 REESKQAKRYLNGFSVDGKLLVVRVAERKEDRLKRLQQYFHAQPRHYTQAPLVPSPAQPV 411
Query: 240 --YPPGPSGLGQQFLYG 254
Y P G Q F G
Sbjct: 412 LSYVPSSYGYLQPFHVG 428
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 15/198 (7%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
+T F N++VKNLD S T L+++F +G I S V+ + +G+SK FGFV FE A
Sbjct: 106 RTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKVVEE-NGQSKGFGFVQFETEQSAVT 164
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSI 143
A AL+G D ++ +V K K+ER AM +G N+Y+KNL ++I
Sbjct: 165 ARSALHGSMVDGKKLFVAKFINKNER---------VAMAGN----KGFTNVYVKNLIENI 211
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
++ L LFS++GT++S VMRD G S+G GFV F PE A +A+ ++G+ + SK L+
Sbjct: 212 TEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLF 271
Query: 204 VAVAQRKEERRARLQAQF 221
V A +++ERR L+ ++
Sbjct: 272 VGKALKRDERREMLKHKY 289
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAV 86
F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+ A+
Sbjct: 20 FASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAM 79
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LN GKA + +++L + NLY+KNL SI
Sbjct: 80 ARLNHTDLK------GKAMRIMWSQRDLSYRRRTGFG---------NLYVKNLDISITSS 124
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L+ +F+ FG I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+VA
Sbjct: 125 GLERMFNPFGVILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAK 183
Query: 207 AQRKEERRA 215
K ER A
Sbjct: 184 FINKNERVA 192
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 129/168 (76%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K + NV+VKN++ T+E+ +++F +YG +TS+
Sbjct: 215 MLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSS 274
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF D AAKAVE LNGK+F +E YVG+AQKK ERE+EL+ +
Sbjct: 275 TLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSY 334
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E +K+QG+NLYIKNL D IDD+KL+++FSEFG ITS KVMRD
Sbjct: 335 EAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSAKVMRD 382
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 123/208 (59%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 141 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 200
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ AA+A++ +NG ++++ YVG K +R+ +FE+ MK N+Y+K
Sbjct: 201 TDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQS----KFEE-MKANY-----TNVYVK 250
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + +E+ +ELFS++G +TS + RD G S+G GFV FST + A++A+ E+NGK
Sbjct: 251 NINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEF 310
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ + R
Sbjct: 311 RGQELYVGRAQKKHEREEELRKSYEAAR 338
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
S A ++P+QQ+ +LGE+L+P ++ L+ + A K+TGMLLEMD E+++LLE AL AK
Sbjct: 685 SQLAATSNPQQQKQILGENLFPKIQALQPELAGKITGMLLEMDNNELVNLLEDETALVAK 744
Query: 439 VAEAMEVL-RSVAQQQA 454
V EAM V V QQA
Sbjct: 745 VNEAMAVYDEYVKSQQA 761
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V +++ + +AL E
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 124
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 125 LNYTLIKGRPCRIMWSQR 142
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N DDA KAV +N + + + YV AQ+K R+ +L+ +
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASIQ 491
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 146/210 (69%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
+IND+ VFV F +++RE + ++F NV++KN + DE L+ +F YG S
Sbjct: 161 VINDRPVFVAPFKPRKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVK 220
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+FE+ + A +AVE +NGK + + +VG+AQKK ER+ ELK FE
Sbjct: 221 VMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFE 280
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q KE + + QG+ LY+KNL D++DDE+L++ FS FG+IT KVM++ G S+G G + F
Sbjct: 281 QMKKERIRRCQGVKLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMKEE-GYSRGFGLICF 339
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PEEA++AL EMNG+++ SK L +A+AQR
Sbjct: 340 SSPEEAAKALTEMNGRVLGSKALSIALAQR 369
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVFVKNLD S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NGK +DR +V + + +RE EL+ + + N+YIK
Sbjct: 146 SQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRSRASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+L+ +FS +G S KVM D SG SKG GFV+F + E A RA+ EMNGK +
Sbjct: 196 NFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDM 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F QM+
Sbjct: 256 NGQLVFVGRAQKKVERQAELKHMFEQMK 283
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 26/212 (12%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADD 81
A K + +++V +L T++ L + F G + S + RD + + +VNF D
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ---FEQAMKETVDKFQGL-NLYIK 137
A +A++ +N FD +KG+ + ++ + G+ N+++K
Sbjct: 64 AQRALDTMN---FD-----------------VIKGRPIRLMWSQRDACLRRSGIGNVFVK 103
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL S+D++ L E FS FG I S KVM D G SKG FV F + A+ A+ +MNGK+I
Sbjct: 104 NLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVI 162
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+P++VA + +++R A L+++ S+ V +
Sbjct: 163 NDRPVFVAPFKPRKDREAELRSRASEFTNVYI 194
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 146/210 (69%), Gaps = 5/210 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D ++FVG F +Q+RE ++ K F N+++KN + D+ L+++F +YG S
Sbjct: 161 LLKDCRLFVGRFKNRQDREA-ELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F + + A KAVE +NGK + + +VG+AQKK+ER+ ELK F
Sbjct: 220 KVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+PEEA+RA+ EMNG+++ SKPL +A+AQ
Sbjct: 339 FSSPEEATRAMTEMNGRILGSKPLNIALAQ 368
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D G S+ + FV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG D +VG+ + + +RE EL+ + ++F N+YIK
Sbjct: 146 NQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNK--------ANEFT--NIYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD++L+E+FS++G S KVM D +G SKG GFV+F + E A +A+ EMNGK I
Sbjct: 196 NFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V AQ+K ER+A L+ F Q +
Sbjct: 256 NGQLLFVGRAQKKAERQAELKQMFEQQK 283
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 149/222 (67%), Gaps = 5/222 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ + +VFV F +++RE+ +K K F NV++KN + D LK++F +YGT S
Sbjct: 354 LLKNCRVFVSRFKSRKDRES-ELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSV 412
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F + + A AVE +NGK + + +VG+AQKK ER+ ELK F
Sbjct: 413 KVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMF 472
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + +G+ LYIKNL D+IDDEKL++ F+ FG+I+ KVM++ G SKG G +
Sbjct: 473 EQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLIC 531
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
FS+ EEA +A+ EMNG+++ SKPL +A+AQR EER+ Q
Sbjct: 532 FSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEERKTCFDNQ 573
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 280 QRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQ 338
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG + +V + + + +RE ELK + + N+YIK
Sbjct: 339 NQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNKASEFT----------NVYIK 388
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DD +LKE+FS++GT S KVM D SG SKG GFV+F++ E A A+ EMNGK I
Sbjct: 389 NFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDI 448
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q+R
Sbjct: 449 NGQLIFVGRAQKKIERQAELKQMFEQLR 476
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
VA K + +++V +L T++ L K F G + S + RD +S + +VNF +
Sbjct: 195 NVAAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHV 254
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 255 ADAQKALDTMN---FD-----------------VIKGKSIRLMWSQRDAYLRKSGIGNVF 294
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNG
Sbjct: 295 IKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGT 353
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ + ++V+ + +++R + L+ + S+ V +
Sbjct: 354 LLKNCRVFVSRFKSRKDRESELKNKASEFTNVYI 387
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 158/503 (31%), Positives = 238/503 (47%), Gaps = 75/503 (14%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI K+V V FLRKQ+RE + F N++V+N +E L++ +YG ITS ++
Sbjct: 178 MLIGGKRVEVAPFLRKQDREGEEV---FTNLYVRNFPADWNEEALRQFLEKYGEITSMML 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQF 118
D G+ F FVN++ + A + V LN K D+ V Q K++R+ L+ QF
Sbjct: 235 KEDSKGRR--FAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQF 292
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ DK NLYIKNL DS DDE L ELF FGTITS KVM D + S+G GFV
Sbjct: 293 NNSSMGQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVC 352
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE------------ERRARLQAQFSQMRP 226
F+ P+EA++A+A M+ K++ KPLYV +A++++ E +R FS++
Sbjct: 353 FTNPQEATKAIAAMHLKLVKGKPLYVGLAEKRDQRMMRMQQRRSFEPHSR-DVLFSELPS 411
Query: 227 VAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPN 286
++ P P +P +G ++F PP P N
Sbjct: 412 QSLYYPRPFPAPSFPNSVAGPNKKF-----PPNFTTNNPQANNYPPNYNANFPPVNSYAN 466
Query: 287 FFVPVVSQGQQGQRPGGRRGAGPVQQTQQP--LPIMPHQMPP-------------RGHAY 331
+ PV + + G R P+ P +P P +PP G+
Sbjct: 467 Y--PVRNVAAKAPSAGNARNMSPMSSANIPSNIPHYPSVVPPSMAHVVASGNMGVHGNLT 524
Query: 332 RYPLGRNM-QDFPFDMGAGSMLPVPVDM--GAGIPRRD-----ASVGQPMPITALSTA-- 381
+ + NM P +MG VP +M GA RRD + Q P++A
Sbjct: 525 HHVVPPNMPHVLPGNMG------VPTNMVPGAVGIRRDNNNPKSHQHQMPPVSAFKFTPQ 578
Query: 382 ------------LANASPE-----QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTE 424
+ N + + Q+ ++GE L+P++ + D A K+TGM+LE+D E
Sbjct: 579 ARNREMPMHPQYVVNGNVQVDDVAMQKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHE 638
Query: 425 VLHLLESPEALKAKVAEAMEVLR 447
+L LLE + LKAK+ EA++VL+
Sbjct: 639 LLQLLEDNDQLKAKIDEAIKVLK 661
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S + L F +G I S V D G SK +GFV++EN + A +A+E +
Sbjct: 116 NIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKV 175
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + V +K +RE E + F NLY++N ++E L+
Sbjct: 176 NGMLIGGKRVEVAPFLRKQDREGE-------------EVFT--NLYVRNFPADWNEEALR 220
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+ ++G ITS + D G + FV + PE A + +N + S+PL V
Sbjct: 221 QFLEKYGEITSMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCPH 278
Query: 208 QRKEERRARLQAQFSQ 223
Q K +R+ L+AQF+
Sbjct: 279 QDKAKRQNLLRAQFNN 294
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L T+ L ++F G + S V RD KS + +VN+ + DA A+E+L
Sbjct: 29 LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALESL 88
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y+ E+KG + M D + N+++KNL SID
Sbjct: 89 N---------YI-----------EIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDT 128
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D SG SK GFV + E A A+ ++NG +I K + VA
Sbjct: 129 KSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
Query: 206 VAQRKEER 213
RK++R
Sbjct: 189 PFLRKQDR 196
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F NV++KN DE LK +F +YG S
Sbjct: 219 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 278
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 338
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 339 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICF 397
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 398 SSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 145 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 204 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NVYIK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 314 NGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 26/219 (11%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74
K + VA K + +++V +L T++ L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QG 131
NF DA KA++ +N FD +KG+ + M D + G
Sbjct: 115 NFLQLADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSG 154
Query: 132 L-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
+ N++IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 191 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
EMNGK++ ++V + +++R A L+++ S+ V +
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 252
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F N+++KN DE LK +F +YG S
Sbjct: 219 LLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVK 278
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 338
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 339 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICF 397
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 398 SSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 145 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 204 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 314 NGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F N+++KN DE LK +F +YG S
Sbjct: 218 LLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVK 277
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 278 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 337
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 338 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICF 396
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 397 SSPEDATKAMTEMNGRILGSKPLSIALAQR 426
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 144 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 202
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 203 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 252
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 253 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 312
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 313 NGQLIFVGRAQKKVERQAELKQMFEQLK 340
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F N+++KN DE LK +F +YG S
Sbjct: 219 LLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVK 278
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 338
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 339 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICF 397
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 398 SSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 145 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 204 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 314 NGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F N+++KN DE LK +F +YG S
Sbjct: 219 LLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVK 278
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 338
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 339 QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICF 397
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 398 SSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 145 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 204 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 254 NFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 314 NGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F N+++KN DE LK +F +YG S
Sbjct: 219 LLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVK 278
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 338
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 339 QLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICF 397
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 398 SSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 145 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 204 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 314 NGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 145/211 (68%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F NV++KN DE LK +F +YG S
Sbjct: 161 LLKGCKVFVGRFKNRKDREA-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 339 FSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 145/211 (68%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F NV++KN DE LK +F +YG S
Sbjct: 161 LLKGCKVFVGRFKNRKDREA-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 339 FSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 137/189 (72%), Gaps = 2/189 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F+ + ERE + +F NV++KN + DE L+++F +YG ITSA
Sbjct: 144 MLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLREMFEKYGKITSA 203
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GK K FGFV+FE+ ++A KAV LN K+ + + YVG+AQKKSER ELK +F
Sbjct: 204 KVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQKKSERAAELKRRF 263
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ + ++++QG+NLY+KNL DSIDDE+L++ F+ FGTITS KVM D +G SKG GFV
Sbjct: 264 EQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAKVMTDSNGRSKGFGFVC 323
Query: 179 FSTPEEASR 187
FS PEEA++
Sbjct: 324 FSAPEEATK 332
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A
Sbjct: 77 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANN 136
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VGK +SERE++L + + M N+YIKN GD +D
Sbjct: 137 AIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFM----------NVYIKNFGDDLD 186
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKL+E+F ++G ITS KVM D +G KG GFV+F PE A +A+ ++N K + K LYV
Sbjct: 187 DEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYV 246
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER A L+ +F Q++
Sbjct: 247 GRAQKKSERAAELKRRFEQLK 267
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
G + + L E FS G + S +V RD + S G +V F P +A RAL MN M+
Sbjct: 1 GTRVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVK 60
Query: 199 SKPLYVAVAQR 209
+P+ + +QR
Sbjct: 61 GRPIRIMWSQR 71
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 169/293 (57%), Gaps = 24/293 (8%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ K++FV F+ K ER +A NV+VKNL E+ TD+ L +F +YGT++S VVM
Sbjct: 175 MVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVM 234
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDG G+S+ FGFVNF N ++A KA+E+L G + ++ +VGKA KK ER + LK +F
Sbjct: 235 RDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS-- 292
Query: 122 MKETVDKF------QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
D F + NLY+KNL +S+++ +L+E+F +G I S KVM +G SKG G
Sbjct: 293 -----DNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFG 347
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-SQMRPVAMGPSVP 234
FV FS EE+ +A +NG ++ KP+ V VA+RKE+R RLQ F +Q R PS P
Sbjct: 348 FVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAPSAP 407
Query: 235 -PRMPM--YPPGPSGLGQQFLYGQAPPAI---IPPQAGFGYQQQLVPGMRPAG 281
P P+ Y G Q F G + + +P +G Q + PAG
Sbjct: 408 SPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQVPQMSG----HQNITTYVPAG 456
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
+T F N++VKNLD S T L+++F +G+I S V+ + +G+SK FGFV F+ A
Sbjct: 108 RTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVS 166
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A AL+G ++ +V K K ER AM D N+Y+KNL +++
Sbjct: 167 ARSALHGSMVYGKKLFVAKFINKDERA---------AMAGNQD---STNVYVKNLIETVT 214
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+ L LFS++GT++S VMRD G S+G GFV F PE A +A+ + G + SK L+V
Sbjct: 215 DDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Query: 205 AVAQRKEERRARLQAQFS 222
A +K+ERR L+ +FS
Sbjct: 275 GKALKKDERREMLKQKFS 292
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAK 84
++F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ LN + + +Q+ + + F NLY+KNL SI
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFA-------------NLYVKNLDSSIT 124
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
L+ +F FG+I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 205 AVAQRKEERRA 215
A K+ER A
Sbjct: 184 AKFINKDERAA 194
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KNLD D++ +K+F ++G ITSA
Sbjct: 203 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 263 TLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D IDDEKL+ELF +GTITS KVMRD
Sbjct: 323 EAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 370
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 129 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 189 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL IDD++ +++F +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 236 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 296 KEIRSQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 167/503 (33%), Positives = 228/503 (45%), Gaps = 125/503 (24%)
Query: 3 INDKQV-----FVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDL 45
+NDK++ +VG +K ERE A K + N++VKNL + DE L
Sbjct: 293 MNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKL 352
Query: 46 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105
+++FG YGTITSA VMRD + V E++ ++A GK +
Sbjct: 353 RELFGPYGTITSAKVMRDTN--------VERESSPESA------------------GK-E 385
Query: 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 165
K++ +E + KE + + + +EK KE + K +
Sbjct: 386 KEANKEND---------KEATPEAEKAEEKAEEKPAESSEEKDKE---------AKKSDK 427
Query: 166 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 428 KPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARN 487
Query: 226 PVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPA 280
+ + P+ M P G GQQ F+ G PPQ G +PG RP
Sbjct: 488 TIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPGGRPG 544
Query: 281 GAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGHAYRY 333
P P P GQQG R G GP QQ Q +P M Q P P G Y
Sbjct: 545 QYPGP---FP----GQQGGR-----GMGPNQQIPPNFAQGIP-MGMQGPGAIPNGMGYP- 590
Query: 334 PLGRNMQDFPFDMGAGSMLPVP-VDMGAG------------IPRRDASV-------GQPM 373
M F GAG VP + MG G +P + + GQ
Sbjct: 591 ----QMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGVPVQQGQIRPGQGGRGQNA 646
Query: 374 PITA----------LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 423
A + L A P QQ+ +LGE+LYP ++ + + A K+TGMLLEMD T
Sbjct: 647 AAPAGPQEGAAGGVNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNT 706
Query: 424 EVLHLLESPEALKAKVAEAMEVL 446
E+L LLE EAL+AKV EA+ V
Sbjct: 707 ELLSLLEDEEALRAKVDEALSVY 729
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 113 LNYTLIKGKPCRIMWSQR 130
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KNLD D++ +K+F ++G ITSA
Sbjct: 205 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSA 264
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 265 TLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D IDDEKL+ELF +GTITS KVMRD
Sbjct: 325 EAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL IDD++ +++F +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 238 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 297
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 298 KEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 144/321 (44%), Gaps = 75/321 (23%)
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 222 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 276
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 277 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 329
RP P P P GQQG RG GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 330 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 362
Y M F GAG VP + MG G+
Sbjct: 589 GY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 363 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 414 TGMLLEMDQTEVLHLLESPEA 434
TGMLLEMD TE+L L P A
Sbjct: 698 TGMLLEMDNTELLSLTRKPCA 718
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 115 LNYTLIKGKPCRIMWSQR 132
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 485
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ ++FVG F +++R E +F NV++KN + DE LK+IF +G I S
Sbjct: 161 LLKGCRLFVGPFKNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVK 220
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D G+SK FGFV+F++ + A +AVE +NGK + +VG+AQKK+ER+ ELK FE
Sbjct: 221 VMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFE 280
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E +F+G+ LYIKNL DSIDDE+L+ FS FG+I+ KVM++ G SKG G + F
Sbjct: 281 QMKQERYRRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMKEE-GRSKGFGLICF 339
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PEEA++A+ EMNG+++ SK L +A+AQR
Sbjct: 340 SSPEEATKAMVEMNGRILGSKSLNIALAQR 369
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNL +S ++ L + F +G I S+ VM D D S+ + FV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILSSKVMSD-DAGSRGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+EA+NG +VG + + +R+ EL+ + ++F N+YIK
Sbjct: 146 SQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNK--------ANEFT--NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKE+FS FG I S KVM D G SKG GFV+F + E A RA+ MNGK +
Sbjct: 196 NFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKDL 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+PL+V AQ+K ER+A L+ F QM+
Sbjct: 256 SGQPLFVGRAQKKAERQAELKLMFEQMK 283
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
V K + +++V +L T++ L K F G + S + RD +S + +VNF +
Sbjct: 2 NVEAKYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------MIKGKSIRLMWSQRDAYLRKSGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D +G S+G FV F + A RA+ MNG
Sbjct: 102 IKNLHKSIDNKTLYEHFSAFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGA 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ L+V + +++R+A LQ + ++ V +
Sbjct: 161 LLKGCRLFVGPFKNRKDRQAELQNKANEFTNVYI 194
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KNLD D++ +K+F ++G ITSA
Sbjct: 205 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSA 264
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 265 TLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D IDDEKL+ELF +GTITS KVMRD
Sbjct: 325 EAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL IDD++ +++F +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 238 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 297
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 298 KEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 155/333 (46%), Gaps = 75/333 (22%)
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 222 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 276
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 277 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 329
RP P P P GQQG R G GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGGR-----GMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 330 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 362
Y M F GAG VP + MG G+
Sbjct: 589 GYP-----QMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 363 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 414 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 698 TGMLLEMDNTELLSLLEDEEALRAKVDEALSVY 730
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 115 LNYTLIKGKPCRIMWSQR 132
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 485
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 149/222 (67%), Gaps = 5/222 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D ++FVG F +++RE + K F NV++KN + DE LK++F +YG S
Sbjct: 156 LLKDCRLFVGRFKSRKDREA-EFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSV 214
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A +AVE +NGK + + +VG+AQKK+ER+ ELK F
Sbjct: 215 KVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMF 274
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E + +G LYIKNL ++IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 275 EQLKHERFRRCRGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLIC 333
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
FS+ EEA++A+ EMNG+++ SKPL +A+AQ+ ER+ +Q
Sbjct: 334 FSSAEEATKAMTEMNGRILGSKPLNIALAQKPXERKTFCISQ 375
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S ++ L + F +G I S+ VM D G S+ + FV+F+
Sbjct: 82 QRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQ 140
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG D +VG+ + + +RE E + + + N+YIK
Sbjct: 141 NQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNKAHEFT----------NVYIK 190
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKE+FS++G S KVM D SG SKG GFV+F + E A RA+ EMNGK I
Sbjct: 191 NFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDI 250
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V AQ+K ER+A L+ F Q++
Sbjct: 251 NGQLLFVGRAQKKAERQAELKQMFEQLK 278
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 145/212 (68%), Gaps = 5/212 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+I D+QV V F +++RE ++T+ F NV+VKN E DE L+ +F +YG S
Sbjct: 273 VIRDRQVLVAPFRSRRDRE-AELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSV 331
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NGK + + +VG+AQKK ER+ ELK F
Sbjct: 332 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVF 391
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ ++ + QG+ LYIKNL D++DD++L+ FS FG+I+ KVM + G KG G V
Sbjct: 392 EELKRDGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVM-EEEGQRKGFGLVC 450
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
FS+PEEA++A+ +MNG+++ SKPL +A+A+R+
Sbjct: 451 FSSPEEAAKAMTQMNGRVLGSKPLNIALAKRQ 482
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 125/208 (60%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NV +KNLD S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 199 QRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQ 257
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NGK DR+ V + + +RE EL+ + + N+Y+K
Sbjct: 258 SQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTRTSEFT----------NVYVK 307
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+L+ +FS++G S KVM D SG SKG GFV+F + E A +A+ EMNGK I
Sbjct: 308 NFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDI 367
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+KEER+A L+ F +++
Sbjct: 368 NGQLVFVGRAQKKEERQAELKQVFEELK 395
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 22/210 (10%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
+VA K + +++V +L T++ L + F G + S + RD + + +VNF
Sbjct: 114 SVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRP 173
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
DA KA++ +N FD E GK + S+R+ L+ K V N+ IK
Sbjct: 174 ADAQKALDTMN---FDAVE---GKPIRLMWSQRDACLR-------KSGVG-----NVIIK 215
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL S+D++ L E FS FG I S KVM D G SKG FV F + A A+ EMNGK+I
Sbjct: 216 NLDRSVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVI 274
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
+ + VA + + +R A L+ + S+ V
Sbjct: 275 RDRQVLVAPFRSRRDREAELRTRTSEFTNV 304
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 143/208 (68%), Gaps = 5/208 (2%)
Query: 7 QVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
++FVG F +Q RE ++++ F N+++KN D L+ +F EYG S VM D
Sbjct: 304 RLFVGRFQSRQAREA-ELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTD 362
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 123
G+S+ FGFV+FE+ + A +AVEALNG++ D + +VG+AQ+K+ER+ EL+ FEQ +
Sbjct: 363 ASGRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQ 422
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
+ + + QG LY+KNL D++D+++L+ FS FG ++ K+MR+ G SKG G + FS+ +
Sbjct: 423 DGLRRAQGAKLYVKNLDDAVDEDRLRREFSGFGAVSRVKIMRE-EGRSKGFGLICFSSAD 481
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKE 211
EA+RALAEMNG+++ SKPL +A+AQ +
Sbjct: 482 EAARALAEMNGRVLGSKPLSIALAQSRR 509
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 121/209 (57%), Gaps = 17/209 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S D+ L + F +G I S+ V+ D G S+ + FV+F+
Sbjct: 225 QRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQ 283
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK---GQFEQAMKETVDKFQGLNL 134
A +A+E +NG + +VG+ Q + RE EL+ G+F NL
Sbjct: 284 EQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSRAGEFT-------------NL 330
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN G +DD +L+ +FSE+G S KVM D SG S+G GFV+F + E A RA+ +NG
Sbjct: 331 YIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEAARRAVEALNG 390
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+ + +PL+V AQRK ER+A L+ F Q
Sbjct: 391 RQVDGQPLFVGRAQRKAERQAELRRAFEQ 419
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 18/201 (8%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
VA K + +++V +LD T++ L + F G + S + RD +S + +VNF
Sbjct: 140 NVAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRL 199
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DA +A++ +N R + +Q+ + + G N++IKNL
Sbjct: 200 ADAQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVG----------------NVFIKNL 243
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
S+DD+ L E FS FG I S KV+ D G S+G FV F A RA+ MNG +
Sbjct: 244 DRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRG 302
Query: 200 KPLYVAVAQRKEERRARLQAQ 220
L+V Q ++ R A L+++
Sbjct: 303 CRLFVGRFQSRQAREAELRSR 323
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ T+E+ +++F ++G ITSA
Sbjct: 200 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSA 259
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 260 TLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D +DDEKL+ELF +GTITS KVMRD
Sbjct: 320 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 126 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 185
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 186 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 232
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + +E+ +ELF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNE 292
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I ++ LYV AQ+K ER L+ Q+ R
Sbjct: 293 KEIRTQKLYVGRAQKKHEREEELRKQYEAAR 323
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 154/480 (32%), Positives = 209/480 (43%), Gaps = 115/480 (23%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
I ++++VG +K ERE A K + N++VKNL + DE L+++FG
Sbjct: 295 IRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFG 354
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
YGTITSA VMRD N E D+E +A K++E+
Sbjct: 355 PYGTITSAKVMRD----------TNIERTQTPE-----------SDKEKENKEATKENEK 393
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
E + E+ ++ D G D + L G
Sbjct: 394 ESSEAEKAEKTEEKPADS--GDEKKEDKESKKADKKGL--------------------GK 431
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 230
SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A +
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQ 491
Query: 231 PSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP 285
+ P+ M P G GQQ F+ GQ PPQ G +PG RP P P
Sbjct: 492 QAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP 549
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQ---TQQPLPIMPHQMP-PRGHAYRYPLGRNMQD 341
P GQQG R G GP QQ Q +P+ Q P P G Y P G M
Sbjct: 550 ---FP----GQQGGR-----GMGPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQ 593
Query: 342 FPFDMGAGSMLPVPV--DMGAGIPRR----------------------------DASVGQ 371
F GAG VP +MG G+ A G+
Sbjct: 594 VQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGR 653
Query: 372 PMPITA---LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 428
P A + AL+ A P QQ+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L L
Sbjct: 654 PEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSL 713
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 110 LNYTLIKGKPCRIMWSQR 127
>gi|293331471|ref|NP_001168063.1| uncharacterized protein LOC100381794 [Zea mays]
gi|223945787|gb|ACN26977.1| unknown [Zea mays]
Length = 183
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 138/189 (73%), Gaps = 11/189 (5%)
Query: 288 FVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQ--MPPRGHAYRYPLGRNMQDFPFD 345
+P+V QGQQ QRP GRR G QQP+P+ Q P G YRYP GR M D P
Sbjct: 1 MMPMVQQGQQPQRPAGRRAGG----MQQPMPMGGQQQVFPRGGRGYRYPTGRGMPD-PGM 55
Query: 346 MGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL 405
G+++P +MG G+P R+A+ QP+PI AL+TALANA P+QQR +LGE+LYPLVEQL
Sbjct: 56 HSVGAVMPPSYEMG-GMPMREAAP-QPVPIGALATALANAPPDQQRLMLGENLYPLVEQL 113
Query: 406 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA--DQLAS 463
ER+ AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAMEVLRS Q +N + QLA+
Sbjct: 114 EREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLAN 173
Query: 464 LSLNENLVS 472
LSLN+ +VS
Sbjct: 174 LSLNDGVVS 182
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ T+E+ +++F ++G ITSA
Sbjct: 200 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSA 259
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 260 TLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D +DDEKL+ELF +GTITS KVMRD
Sbjct: 320 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 126 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 185
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 186 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 232
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + +E+ +ELF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNE 292
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I ++ LYV AQ+K ER L+ Q+ R
Sbjct: 293 KEIRTQKLYVGRAQKKHEREEELRKQYEAAR 323
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 172/530 (32%), Positives = 231/530 (43%), Gaps = 124/530 (23%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
I ++++VG +K ERE A K + N++VKNL + DE L+++FG
Sbjct: 295 IRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFG 354
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
YGTITSA VMRD N E D+E +A K++E+
Sbjct: 355 PYGTITSAKVMRD----------TNIERTQTPE-----------SDKEKENKEATKENEK 393
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
E + E+ ++ D G D + L G
Sbjct: 394 ESSEAEKAEKTEEKPADS--GDEKKEDKESKKADKKGL--------------------GK 431
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 230
SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A +
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQ 491
Query: 231 PSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP 285
+ P+ M P G GQQ F+ GQ PPQ G +PG RP P P
Sbjct: 492 QAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP 549
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQ---TQQPLPIMPHQMP-PRGHAYRYPLGRNMQD 341
P GQQG R G GP QQ Q +P+ Q P P G Y P G M
Sbjct: 550 ---FP----GQQGGR-----GMGPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQ 593
Query: 342 FPFDMGAGSMLPVPV--DMGAGIPRR----------------------------DASVGQ 371
F GAG VP +MG G+ A G+
Sbjct: 594 VQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGR 653
Query: 372 PMPITA---LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 428
P A + AL+ A P QQ+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L L
Sbjct: 654 PEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSL 713
Query: 429 LESPEALKAKVAEAMEVL---------RSVAQQQANNPADQLASLSLNEN 469
LE EAL+AKV EA+ V S A +A P + S EN
Sbjct: 714 LEDEEALRAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 110 LNYTLIKGKPCRIMWSQR 127
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 141/210 (67%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +Q+RE + ++F NV++KN DE LK +F +YG S
Sbjct: 438 LLQGCKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 497
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +V +AQKK ER+ ELK FE
Sbjct: 498 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFE 557
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q E + Q + LY+KNL D+IDDEKL++ FS FG+I+ KVM++ G SKG G + F
Sbjct: 558 QLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICF 616
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S+PE+A +A+ EMNG+++ SKPL +A+AQR
Sbjct: 617 SSPEDALKAMTEMNGRILGSKPLSIALAQR 646
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 130/212 (61%), Gaps = 11/212 (5%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
L +R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + F
Sbjct: 360 LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAF 418
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
V+F+N A +A+E +NGK + +VG+ + + +RE EL+ + + N
Sbjct: 419 VHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASEFT----------N 468
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMN
Sbjct: 469 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 528
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
G+ I + ++VA AQ+K ER+A L+ F Q++
Sbjct: 529 GRDINGQLIFVARAQKKVERQAELKQMFEQLK 560
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
E V K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 276 EEMDVEAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNF 335
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLY 135
+ DA KA++ +N FD Q KS R + ++ + G+ N++
Sbjct: 336 LHLADAQKALDTMN---FD-------VIQGKSIR-------LMWSQRDAYLRRSGIGNVF 378
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 379 IKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 437
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
++ ++V + +++R A L+++ S+ V
Sbjct: 438 LLQGCKVFVGRFKSRQDREAELRSKASEFTNV 469
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 141/209 (67%), Gaps = 3/209 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ +VFVG F +++RE + ++F N+++KN DE LK +F +YG S
Sbjct: 287 LLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVK 346
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 347 VMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 406
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q +E + +QG+ LY+KNL D+IDDEKL+ FS FG+I KVM+ G SKG GF+ F
Sbjct: 407 QLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICF 465
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQ 208
S+ E+A++A+ EMNG+ + SKP+ +A+AQ
Sbjct: 466 SSLEDATKAMIEMNGRFLGSKPISIALAQ 494
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 213 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQ 271
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG+ + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 272 NQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 321
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D G SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 322 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 381
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 382 NGQLIFVGRAQKKVERQAELKQMFEQLK 409
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 142/207 (68%), Gaps = 8/207 (3%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101
DE LK +F S VM D GKSK F FV+FE +DA KAV+ +NGK+ + ++ YV
Sbjct: 3 DERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYV 59
Query: 102 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161
G+AQKK E + E K +FEQ ++T+ ++QG+NLY+KNL D IDDE L++ FS FGTITS
Sbjct: 60 GRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSA 119
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
KVM + G SKG GFV FS+PEEA++A+ EMNG+ + +KPLYVA+AQ KEE A L +Q+
Sbjct: 120 KVMME-GGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQY 178
Query: 222 SQMRPVAMGPSVPPRM--PMYPPGPSG 246
M+ +A +VP + P P PSG
Sbjct: 179 --MQRMASVRAVPNAVINPYQPAPPSG 203
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K E +T K KF N++VKNLD+ DE L+K F
Sbjct: 52 LNGKQIYVGRAQKKVEPQTEP-KHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEF 110
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV+ +NG+ + YV AQ K E
Sbjct: 111 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEE 169
Query: 110 REQELKGQFEQAM 122
L Q+ Q M
Sbjct: 170 SPAHLTSQYMQRM 182
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
+DDE+LK+LF S KVM D SG SKG FV+F E+A +A+ EMNGK + K +
Sbjct: 1 MDDERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 203 YVAVAQRKEERRARLQAQFSQMR 225
YV AQ+K E + + +F QM+
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMK 80
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 143/211 (67%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D ++FVG F +++RE + K F NV++KN + DE L ++F +YG S
Sbjct: 161 LLKDCRLFVGRFKSRKDREA-EFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A +AVE +NGK + + +VG+AQKK+ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E + QG LYIKNL ++IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+ EEA++A+ EMNG+++ SKPL +A+AQ+
Sbjct: 339 FSSAEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S ++ L + F +G I S+ VM D G S+ + FV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG D +VG+ + + +RE E + + + N+YIK
Sbjct: 146 NQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNKAHEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+L E+FS++G S KVM D SG SKG GFV+F + E A RA+ EMNGK I
Sbjct: 196 NFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRP 226
+ L+V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLLFVGRAQKKAERQAELKQMFEQLKH 284
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 126/169 (74%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSA 268
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 269 TLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQ 328
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+
Sbjct: 329 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 135 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 194
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 195 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 241
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 302 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 231/553 (41%), Gaps = 162/553 (29%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
+ ++++VG +K ERE A K + N+++KNL + DE L+++F
Sbjct: 305 LKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFS 364
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
YG ITSA VMR+ V E D E + D E K + KSE
Sbjct: 365 SYGNITSAKVMRE------AIVDVPAETEKDKEADKEKAKKEGGDKSEE---KGESKSES 415
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
E + K +EK + G S K + G
Sbjct: 416 EDKSK----------------------------SEEKTE------GKTESTKPEKKHLGK 441
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR--------LQAQFS 222
SKG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++ +++QF+
Sbjct: 442 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIHLIRSQFT 501
Query: 223 QMRPVAMGPSVPPRMPMYP---PGPSGLGQQFLYGQAPPAII---PPQAGF--------- 267
+ + S+ R + +G+ Q F+ PA+ P Q GF
Sbjct: 502 NI--YQLEASIQARNTIRQQQVAAAAGMAQPFMQ----PAVFYGAPGQQGFLPGAQRGMQ 555
Query: 268 --GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQTQQPLP---IM 320
G ++PGM P G P GQ Q PG G RG P QPLP M
Sbjct: 556 FAGQAGMVMPGM-PGGRP-----------GQFPQFPGQQGGRGMNP----NQPLPPNFGM 599
Query: 321 PHQMPPRG--------HAYRYP-LGRNMQDF---------------PFDMGAGSMLPVP- 355
Q P G + YP +G +Q F P A M P
Sbjct: 600 GSQGIPMGAMQGAGIPNGLNYPQIGGQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPG 659
Query: 356 ---VDMGAGIPR----------------------RDASVGQPMPITALSTALANASPE-Q 389
G G+P RD + G +++ A+ NA+PE Q
Sbjct: 660 APGFAQGRGMPMQQGGRAGPGGRGQGAPGQGGIPRDEAAGS----GSINLAVFNAAPEPQ 715
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ +LGE++YP + + + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V
Sbjct: 716 QKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEY 775
Query: 450 AQQQANNPADQLA 462
+ + + P + A
Sbjct: 776 VKNKNDAPTGEAA 788
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDTAIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 126/169 (74%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 225 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSA 284
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 285 TLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQ 344
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+
Sbjct: 345 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 393
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 151 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 210
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 211 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 257
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 258 YVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 317
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 318 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 349
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 151/548 (27%), Positives = 236/548 (43%), Gaps = 153/548 (27%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
+ ++++VG +K ERE A K + N+++KNL + DE L+++F
Sbjct: 321 LKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFS 380
Query: 51 EYGTITSAVVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108
YG ITSA VMR+ D ++ ++ + + + G K +++ +++ KS
Sbjct: 381 SYGNITSAKVMREAIVDVPAETE-----KDKEADKEKAKKETGDKSEEKGESKSESEDKS 435
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
+ E++ +G+ E A E K+LG S
Sbjct: 436 KSEEKTEGKTESAKPEK-----------KHLGKS-------------------------- 458
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-----SQ 223
KG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R++++ + SQ
Sbjct: 459 ---KGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIHFLRSQ 515
Query: 224 MRPV-AMGPSVPPRMPMYP---PGPSGLGQQFLYGQAPPAII---PPQAGF--------- 267
+ + + S+ R + +G+ Q F+ PA+ P Q GF
Sbjct: 516 VTNIYQLEASIQARNTIRQQQVAAAAGMAQPFMQ----PAVFYGAPGQQGFLPGAQRGMQ 571
Query: 268 --GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG--GRRGAGPVQQTQQPLP---IM 320
G ++PGM P G P GQ Q PG G RG P QPLP M
Sbjct: 572 FAGQAGMVMPGM-PGGRP-----------GQFPQFPGQQGGRGMNP----NQPLPPNFAM 615
Query: 321 PHQMPPRG--------HAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG-IPRRDASVGQ 371
Q P G + YP +Q F G G + AG P+ G
Sbjct: 616 SGQGIPMGAMQGTGIPNGLNYPQLGQVQSFGRGGGRGQGPMQGMPPAAGNAPQMRGGPGA 675
Query: 372 P-------MPIT-----------------------------ALSTALANASPE-QQRTLL 394
P MPI +++ A+ NA+PE QQ+ +L
Sbjct: 676 PGFAQGRSMPIQQGGRAGPGGRGQGAPGQGGIPRDEAAGSGSINLAVFNAAPEPQQKQML 735
Query: 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
GE++YP + + + A K+TGMLLEMD +E++ L++ AL+AKV EA+ V + +
Sbjct: 736 GEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEYVKNKN 795
Query: 455 NNPADQLA 462
+ P + A
Sbjct: 796 DAPTGEAA 803
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 75 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 134
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 135 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDTAIDNKAL 178
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 179 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 238
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 239 AKKDR----QSKFEEMK 251
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 122/168 (72%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D TD++ + +F +G ITSA
Sbjct: 196 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSA 255
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D DGKS+ FGFVN+ N + A AV +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 256 TLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQY 315
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D IDDEKL++LF+ +GTITS KVMRD
Sbjct: 316 EAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D SK +GFV++E
Sbjct: 122 QRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYE 181
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 182 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNI 228
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ I D++ + +F FG ITS + D G S+G GFV ++ E A A+AEMN
Sbjct: 229 YIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNE 288
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 289 KEVKSQKLYVGRAQKKHEREEELRKQYEAAR 319
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 70/187 (37%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
+ ++++VG +K ERE A K + N++VKNL + DE L+ +F
Sbjct: 291 VKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFT 350
Query: 51 EYGTITSAVVMRDGDGKS------------------------------------------ 68
YGTITSA VMRD +S
Sbjct: 351 PYGTITSAKVMRDAAERSPTPEAEEKEAAKETKDSEEKEVKTEETAEVKTEAAEKKTEEG 410
Query: 69 ----------KCFG------FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 112
K FG FV F + D+A+KAV +N + + + YV AQ+K R
Sbjct: 411 EATEEKKTEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 470
Query: 113 ELKGQFE 119
+L+ +
Sbjct: 471 QLEASIQ 477
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 106 LNYTLIKGKPCRIMWSQR 123
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 126/169 (74%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSA 268
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 269 TLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQ 328
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+
Sbjct: 329 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 135 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 194
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 195 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 241
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALN 301
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 302 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDTAIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 144/329 (43%), Gaps = 78/329 (23%)
Query: 6 KQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE A K + N+++KNL + DE L+++F YG
Sbjct: 308 QKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYG 367
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
ITSA VMR E DA E + + G KSE + E
Sbjct: 368 NITSAKVMR--------------EAIVDAPAEAEKDKEADKEKAKKEAGD---KSEEKGE 410
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
K + E K +EK + G S K + G SKG
Sbjct: 411 AKSESEDKSK--------------------SEEKTE------GKTESAKPEKKHLGKSKG 444
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+ + + + +
Sbjct: 445 FGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLETPSANSKLL-----L 499
Query: 234 PP--RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLV-PGMRPAGAP--MPNFF 288
PP R P PS + L +A ++ + + V PGM P+G P P F
Sbjct: 500 PPEWRNPSCSL-PSSMAH--LASKASSPVLSVECSLLVKLVWVMPGM-PSGRPGQFPQF- 554
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPL 317
GQQG R G+ G + +QPL
Sbjct: 555 -----PGQQGGRAPGQ---GGIHAMKQPL 575
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 374 PITALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESP 432
P+ ++ A+ NA+PE QQ+ +LGE++YP + + + A K+TGMLLEMD +E++ L++
Sbjct: 574 PLRSIILAVFNAAPESQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDD 633
Query: 433 EALKAKVAEAMEVLRSVAQQQANNPADQLA 462
AL+AKV EA+ V + + + PA + A
Sbjct: 634 VALRAKVDEALTVYDEYVKNKNDAPAGEAA 663
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 128/182 (70%), Gaps = 4/182 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK + + YVG+A KK ER+ ELK +F
Sbjct: 221 KVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 280 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 338
Query: 179 FS 180
FS
Sbjct: 339 FS 340
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 129/208 (62%), Gaps = 12/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE+F ++G S KVM D SG SKG GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV A +K ER+ L+ +F QM+
Sbjct: 257 NGKAIYVGRA-KKVERQTELKRKFEQMK 283
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 500 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE 557
Query: 434 ALKAKVAEAMEVLRSVAQQQA 454
+L++KV EA+ + A++ A
Sbjct: 558 SLRSKVDEAVVLQAHQAKEAA 578
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN++ TD++ + +F +YG +TS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSS 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + +DA+KAV+ LN K+F + YVG+AQKK ERE+EL+
Sbjct: 272 SLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKS 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A +E K+QG+NLYIKNL D +DDEKL++LFSEFG ITS KVMRD
Sbjct: 332 YEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 120/212 (56%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 138 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ E+K F N+
Sbjct: 198 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + D++ + LF ++G +TS + RD +G S+G GFV F++ E+AS+A+ E+N
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 305 EKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 226 PKKDRQSKFDEMKANFTNIYVKNINPEV 253
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+P QQ+ +LGE+++P ++ + + A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V
Sbjct: 676 NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
Query: 446 LRSVAQQQANNPADQLAS 463
+QQ + Q S
Sbjct: 736 YDDYVRQQGDGEGAQAPS 753
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 63/177 (35%)
Query: 6 KQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 53
+ ++VG +K ERE A K + N+++KNLD+ DE L+++F E+G
Sbjct: 311 QNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFG 370
Query: 54 TITSAVVMRD-----------------------------GDGKS---------------- 68
ITSA VMRD GD
Sbjct: 371 PITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLG 430
Query: 69 --KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 123
K FGFV F N DDA KAV +N + +++ YV AQ+K R K Q EQ+++
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 145/211 (68%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ + ++FVG F ++ERE ++ K F NV++KN + DE LK++F +YG I S
Sbjct: 161 LLKNCRLFVGPFKNRKEREA-ELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F+ + A +AVE +NGK + +VG+AQKK+ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + +G+ LYIKNL ++ID+E+L+ FS FG+++ KVM + G SKG G +
Sbjct: 280 EQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS PEEA++A+AEMNG+++ SK + +A+AQR
Sbjct: 339 FSCPEEATKAMAEMNGQVLGSKAINIALAQR 369
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 129/213 (60%), Gaps = 11/213 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD S ++ L + F +G I S+ VM D G S+ + FV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG + +VG + + ERE EL+ + ++F N+YIK
Sbjct: 146 SQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQNK--------ANEFT--NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+LKE+FS++G I S KVM D SG SKG GFV+F T E A RA+ MNGK I
Sbjct: 196 NFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 230
+ ++V AQ+K ER+A L+ F Q++ G
Sbjct: 256 CGQMVFVGRAQKKAERQAELKQMFEQLKRERFG 288
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 147/211 (69%), Gaps = 3/211 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+L+ D ++FVG F +++RE ++F N+++KN + DE LK+ F YG I S
Sbjct: 160 VLLKDFRLFVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F+ + A +AV+ +NG++ ++ +VG+AQKK+ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + +G +Y+KNL ++ID+EKL++ FS FG+I KVM++ G S+G G +
Sbjct: 280 EQRKQERSWRVRGTKIYVKNLDETIDEEKLRKAFSSFGSIIRVKVMQEE-GRSRGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PEEA+RA+AEMNG+++ SKP+ +A+AQR
Sbjct: 339 FSSPEEAARAMAEMNGRLLGSKPVNIALAQR 369
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 11/206 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D G S+ +GFV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILSSKVMCDDQG-SRGYGFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NG D +VG + + +RE EL+ + + N+YIK
Sbjct: 146 NQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQNKASEFT----------NIYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDEKLKE FS +G I S KVM D SG SKG GFV+F T E A RA+ +NG+ I
Sbjct: 196 NFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQ 223
+ ++V AQ+K ER+A L+ F Q
Sbjct: 256 FGQQVFVGRAQKKAERQAELKQLFEQ 281
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 186
K++ +LY+ +L + + L FS GT+ S ++ RD + S G +V F +A
Sbjct: 6 KYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQ 65
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
RAL MN +I + + + +QR
Sbjct: 66 RALDTMNFDVIQGQSIRLMWSQR 88
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 125/169 (73%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSA 268
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVE LN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 269 TLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQ 328
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+
Sbjct: 329 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 135 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 194
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 195 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 241
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 242 YVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLN 301
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 302 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 333
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 151/517 (29%), Positives = 221/517 (42%), Gaps = 109/517 (21%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
+ ++++VG +K ERE A K + N+++KNL + DE L+++F
Sbjct: 305 LKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFS 364
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
YG ITSA VMR+ ++ + + + G K +D KA+ KS+
Sbjct: 365 SYGNITSAKVMREAISDVPA---DAEKDKEADKEKAKKETGDKPED------KAETKSDE 415
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
+ E K + E+ +T K G K+LG S
Sbjct: 416 KSEDKSKSEE---KTEGKTDGAKTEKKHLGKS---------------------------- 444
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQ 223
KG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q
Sbjct: 445 -KGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQ 503
Query: 224 MRPVAMG---PSVPPRMPMYPPGPSGL------GQQFLYGQAP------PAIIPPQAGFG 268
A G P + P + PG G G QF GQA P P Q
Sbjct: 504 QVAAAAGMAQPFMQPAVFYGAPGQQGFLPGAQRGMQFA-GQAGMVMPGMPGGRPGQFAQF 562
Query: 269 YQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQP------------ 316
QQ GM P P+P P + G QG G +GAG P
Sbjct: 563 PGQQGGRGMNP-NQPLP----PNFAMGGQGIPMGAMQGAGIPNGLNYPQMGQSFGRGGGR 617
Query: 317 LPIMPHQMPP-RGHA---------YRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 366
MPP G+A Y GRNM G+PR +
Sbjct: 618 GQGPMQGMPPAAGNAPPMRGGPGGPGYSQGRNMPMQQGGRPGPGGRGQGAPGQGGMPRDE 677
Query: 367 ASVGQPMPITALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEV 425
A+ + + + A PE QQ+ +LGE++YP + + + A K+TGMLLEMD +E+
Sbjct: 678 AAGPGSINLQVFNAA-----PEPQQKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSEL 732
Query: 426 LHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
+ L++ AL+AKV EA+ V + + + PA + A
Sbjct: 733 IGLVDDDAALRAKVDEALTVYDEYVKNKNDAPAGEAA 769
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDTAIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 122/168 (72%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D TD++ + +F +G ITSA
Sbjct: 196 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSA 255
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D DGKS+ FGFVN+ N + A AV +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 256 TLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQY 315
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D IDDEKL++LF+ +GTITS KVMRD
Sbjct: 316 EAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 115/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D SK +GFV++E
Sbjct: 122 QRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYE 181
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 182 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNI 228
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ I D++ + +F FG ITS + D G S+G GFV ++ E A A+AEMN
Sbjct: 229 YIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNE 288
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + ++ LYV AQ+K ER L+ Q+ R
Sbjct: 289 KEVKTQKLYVGRAQKKHEREEELRKQYEAAR 319
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 148/304 (48%), Gaps = 49/304 (16%)
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G SKG GFV FS+P+EAS+A+ EMN +M+ +KPLYVA+AQRK+ RR++L+A +
Sbjct: 423 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQLEASIQARNTIR 482
Query: 229 MGPSVPPRMPMYPPGPSGLGQQFL-----YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
+ +G+ Q F+ YG +PP Q+ +P G P
Sbjct: 483 QQQAA---------AAAGMPQPFMQPAVFYGAGQQGFMPPG-----QRGGMPFAPQGGMP 528
Query: 284 MPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP-----PRGHAYRYPLGRN 338
MPN +P G P G RG P QQ MP M P G Y P
Sbjct: 529 MPN--MPAGRPQYPGPFPQGGRGMPPNQQLPPNFQGMPMGMQAPGGIPNGMGYPMP---- 582
Query: 339 MQDFPFDMGAGSMLPVPVDMGAG--------------IPRRDASVGQPM---PITALSTA 381
Q F G + +P++M G + A GQP P +A + A
Sbjct: 583 -QAFGRGGGGRGVPGMPMNMRGGPGFSRGGPQMGRGGGRGQPAPGGQPAGGEPASA-NQA 640
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L A P QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L LL+ EAL+ KV E
Sbjct: 641 LLAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDDEEALRGKVDE 700
Query: 442 AMEV 445
A+ V
Sbjct: 701 ALNV 704
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 106 LNYTLIKGKPCRIMWSQR 123
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+++ TDE+ + +F +YG ITSA
Sbjct: 137 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALFEKYGDITSA 196
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + + A+ AVE LN + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 197 TLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQ 256
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +G ITS KVMR+ +
Sbjct: 257 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAT 307
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 220/526 (41%), Gaps = 129/526 (24%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
+ ++++VG +K ERE A K + N+++KNL + DE L+++F
Sbjct: 233 LKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFS 292
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
YG ITSA VMR+ E ++ K EA D+E G+A +K+E
Sbjct: 293 SYGNITSAKVMREATA----------EVPTESDKDKEA-------DKEKAKGEAGEKTEE 335
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
E G + D + K G K + G
Sbjct: 336 GPE--------------------------GKTDDKSEEKTEEKTEGKTEGAKPEKKHLGK 369
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF-------SQ 223
SKG GFV FS P+EAS+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A Q
Sbjct: 370 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQARNTIRQQ 429
Query: 224 MRPVAMG---PSVPPRMPMYPPGPSGL--------------------------------- 247
A G P + P + PG G
Sbjct: 430 QVAAAAGMPQPFMQPAVFYGTPGQQGFLPGAQRGGMQFAGQAGMVMPGMPGGRPAQFAQF 489
Query: 248 -GQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPN-FFVPVVSQGQQGQRPGGRR 305
GQQ G P +PP G Q + M+ GA MPN P ++Q Q R GGR
Sbjct: 490 PGQQGGRGMNPNQPLPPNFAMGGQSLPMGAMQ--GAGMPNGLNYPQMAQVQSFGRGGGR- 546
Query: 306 GAGPVQQTQQPLPIMPHQMPPRGHA--------YRYPLGRNMQDFPFDMGAGSMLPVPVD 357
QP+ MP P G+A + GRNM
Sbjct: 547 --------GQPMQGMP---PATGNAPPIRGPGGPGFSQGRNM-PMQGGRPGPGGRGQGAP 594
Query: 358 MGAGIPRRDASVGQPMPITALSTALANASPE-QQRTLLGESLYPLVEQLERDAAAKVTGM 416
G+PR + + + + A NA+PE QQ+ +LGE++YP V + + A K+TGM
Sbjct: 595 GQGGMPRDETAGPSSINLQAF-----NAAPEPQQKQMLGEAIYPKVLAQQPELAGKITGM 649
Query: 417 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 462
LLEMD +E++ L++ AL+AKV EA+ V + + P+ + A
Sbjct: 650 LLEMDNSELIGLVDDDAALRAKVDEALTVYDEYVKNKTEAPSGEAA 695
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 63 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYE 122
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 123 TAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANF-------------TNI 169
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + DE+ + LF ++G ITS + RD +G S+G GFV FS E AS A+ +N
Sbjct: 170 YVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLN 229
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ + LYV AQ+K ER L+ Q+ R
Sbjct: 230 EYELKGQKLYVGRAQKKHEREEELRKQYEAAR 261
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 45 LKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103
L ++F G + S V RD +S + +VN+ N D +A+E LN R +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
+Q+ + A+++T QG N++IKNL +ID++ L + F+ FG I SCKV
Sbjct: 62 SQR------------DPALRKTG---QG-NVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+D G SKG GFV + T E A+ A+ +NG ++ K ++V K++R Q++F +
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDR----QSKFEE 161
Query: 224 MR 225
M+
Sbjct: 162 MK 163
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F N+++KN DE LK +F +YG S
Sbjct: 161 LLKSCKVFVGRFKNRKDREA-ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + +QG+ LY+KNL D+IDDEKL+ FS FG+I KVM+ G SKG GF+
Sbjct: 280 EQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ E+A++A+ EMNG + SKP+ +A+AQ
Sbjct: 339 FSSLEDATKAMIEMNGCFLGSKPISIALAQ 368
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSKASEFT----------NIYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLIFVGRAQKKVERQAELKQMFEQLK 283
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D +D+D + +F ++G ITSA
Sbjct: 199 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 SIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KVMRD
Sbjct: 319 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + D+ ++LF + G ITS + RD G S+G GFV + E AS A+ +N
Sbjct: 232 YVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 292 TDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +++D KA+E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 109 LNYTVIKGKPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDHAIDNKAL 152
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ ++A F+ +
Sbjct: 213 PKKERMSKFEEMKANFTNI 231
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+AL A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALQGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTADEAALRAKV 717
Query: 440 AEAMEVLRSVAQQQANNP 457
EAM V + + P
Sbjct: 718 DEAMSVYDEYVKNKEGEP 735
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 124/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D +DE+ +++F ++G ITSA
Sbjct: 199 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 SIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KVMRD
Sbjct: 319 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ +ELF + G ITS + RD G S+G GFV + E AS A+ +N
Sbjct: 232 YVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 292 TDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+AL+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALSGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAKV 717
Query: 440 AEAMEV 445
EAM V
Sbjct: 718 EEAMSV 723
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 64/178 (35%)
Query: 6 KQVFVGHFLRKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE + ++K+ N+++KNL++ DE L+ +F +G
Sbjct: 297 QKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFG 356
Query: 54 TITSAVVMRD----------GD-------------------------------------- 65
TITSA VMRD GD
Sbjct: 357 TITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENKPGEKVTIKGE 416
Query: 66 ----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 417 KKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 474
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V +++ E+ +AL E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 109 LNYTVIKGKPCRIMWSQR 126
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 144/210 (68%), Gaps = 5/210 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+ D +VFVG F +++RE ++ K F NV++KN + DE L+++F YG I S
Sbjct: 161 FLKDCKVFVGRFKSRKDREA-ELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM + GKS+ FGFV+F++ + A KAVE +NGK+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ KE + QG LYIKNL ++IDDEKL++ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ E+A+RA+ MNG+++ SKPL +A+AQ
Sbjct: 339 FSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 130/209 (62%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NGK D + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 SQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNKASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE+L+E+FS +G I S KVM + G S+G GFV+F + E A +A+ EMNGK +
Sbjct: 196 NFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEV 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRP 226
+P++V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQPIFVGRAQKKVERQAELKQMFEQLKK 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 24/213 (11%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
VA K + +++V +L T++ L K F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGL-NLYI 136
DA KA++ +N FD GKA + S+R+ L+ G+ N++I
Sbjct: 62 ADAQKALDTMN---FD---VVKGKAIRLMWSQRDAYLRKS-------------GIGNVFI 102
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L E FS FG I S KVM D G SKG FV F + A RA+ EMNGK
Sbjct: 103 KNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKF 161
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ ++V + +++R A L+ + S+ V +
Sbjct: 162 LKDCKVFVGRFKSRKDREAELRNKASEFTNVYI 194
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F NV++KN DE LK +F +YG S
Sbjct: 161 LLQGCKVFVGRFKSRKDREA-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +V +AQKK ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ KE + Q + LY+KNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
FS+PE+A +A+ EMNG+++ SKPL +A+AQ E R
Sbjct: 339 FSSPEDALKAMTEMNGRILGSKPLSIALAQCSELR 373
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSKASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRP 226
+ ++VA AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLIFVARAQKKVERQAELKQMFEQLKK 284
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENA 79
V K + +++V +L T++ L + F G + S + RD +S + +VNF +
Sbjct: 2 NVEAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLQGCKVFVGRFKSRKDREAELRSKASEFTNVYI 194
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 124/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D +DE+ +++F ++G ITSA
Sbjct: 199 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 SIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KVMRD
Sbjct: 319 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ +ELF + G ITS + RD G S+G GFV + E AS A+ +N
Sbjct: 232 YVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 292 TDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+AL+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 658 SALSGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAKV 717
Query: 440 AEAMEV 445
EAM V
Sbjct: 718 EEAMSV 723
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 64/178 (35%)
Query: 6 KQVFVGHFLRKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE + ++K+ N+++KNL++ DE L+ +F +G
Sbjct: 297 QKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFG 356
Query: 54 TITSAVVMRD----------GD-------------------------------------- 65
TITSA VMRD GD
Sbjct: 357 TITSAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGE 416
Query: 66 ----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 417 KKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 474
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V +++ E+ +AL E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 109 LNYTVIKGKPCRIMWSQR 126
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D TD++ + +F ++G ITSA
Sbjct: 198 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSA 257
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + A+ AVE LN +F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 258 SIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQY 317
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KVMRD
Sbjct: 318 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRD 365
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 124 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 183
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 184 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 230
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + D++ ++LF + G ITS + RD G S+G GFV + E AS A+ +N
Sbjct: 231 YVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLND 290
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 291 TEFHGQKLYVGRAQKKHEREEELRKQYEAAR 321
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +++D KA+E
Sbjct: 48 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 107
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 108 LNYTVIKGKPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDHAIDNKAL 151
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 152 HDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 211
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ ++A F+ +
Sbjct: 212 PKKERMSKFEEMKANFTNI 230
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%)
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
AL++A P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 657 ALSSAPPGQQKQMLGEALYPKIHEMQPEFAGKITGMLLEMDNSELINLTSDEAALRAKVE 716
Query: 441 EAMEV 445
EAM V
Sbjct: 717 EAMSV 721
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 424 GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRKNQLEATIQ 477
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F N++VKN+ TD+ +++F ++G +TSA
Sbjct: 213 MLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSA 272
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GK++ FGFVNF N + A+ AV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 273 SLARDEAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSY 332
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D +DDEKL+ELF+ +G ITS KVMRD
Sbjct: 333 EAARIEKASKYQGVNLYVKNLEDDVDDEKLRELFAPYGAITSAKVMRD 380
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 139 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGNSKGYGFVHYE 198
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ +VG K +R+ +E+K F N+
Sbjct: 199 TDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANF-------------TNI 245
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ +ELF +FG +TS + RD +G ++G GFV F E AS A+ E+NG
Sbjct: 246 YVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDELNG 305
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + + LYV AQ+K ER L+ + R
Sbjct: 306 KDFMGQDLYVGRAQKKHEREEELRKSYEAAR 336
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 160/349 (45%), Gaps = 93/349 (26%)
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G SKG GFV F+ P+EA++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A +
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQIR 506
Query: 229 MGPSVPPRMPMYPPGPSGLGQQFLYGQAP--------PAIIPPQAG-----FGYQQQL-V 274
M + +GL QQF+ QAP P +PP AG F QQ + +
Sbjct: 507 MQQAA---------AAAGLPQQFI--QAPMFYGPGQQPGFMPPNAGGRGMPFPLQQGMGI 555
Query: 275 P--GMRPA------------GAPMPNFFVPVVSQGQQGQ-RPGGRRG-AGPVQ------- 311
P G RP G P P P V G GQ PG G AG Q
Sbjct: 556 PAQGARPGQYPNFPPQQAGRGGPGPQQLPPSVY-GLPGQFSPGAPYGQAGNPQFLAAMQQ 614
Query: 312 -----------------QTQQPLPIMPHQM-----------PPRGHAYRYPLGRNMQDFP 343
Q LP MP M PP+ + + GR M P
Sbjct: 615 AQAAALAGAGRGGPGGRMPMQALPGMPPNMAGLQGVPGPGMPPQAYRQQNNAGRGMPGRP 674
Query: 344 FDMGAGSMLPVPVDMGAGIPRRDASVGQ-PMP------ITALSTALANASPEQQRTLLGE 396
AG P GA R + GQ P+P +AL L A P QQ+ LLGE
Sbjct: 675 GQ--AGGFPP----QGA---RSTSQAGQAPVPGASQEGASALQAQLTTAPPAQQKQLLGE 725
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+L+P ++ ++ + A K+TGMLLEMD E++ L+E +L+AKV EA+ V
Sbjct: 726 ALFPKIQVMQPELAGKITGMLLEMDNAELVGLIEDESSLRAKVDEALTV 774
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 63 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEE 122
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 123 LNYTLIKGRPCRIMWSQR 140
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 125/169 (73%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R + +K F NV+VKN+D TD++ +++F +YG ITSA
Sbjct: 208 MLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSA 267
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ D + GKS+ FGFVNF + AAKAV+ LN K + ++ YVG+AQKK ERE+EL+ Q
Sbjct: 268 SLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQ 327
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A E K+QG+NLY+KNL D +DDEKL+++F+ FGTITS KVMRD
Sbjct: 328 YEAARAEKQSKYQGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKVMRD 376
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 134 QRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 193
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG ++++ +VG K +R +E+K F N+
Sbjct: 194 TAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF-------------TNV 240
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + D++ +ELF ++G ITS + D +G S+G GFV F E A++A+ E+N
Sbjct: 241 YVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELN 300
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q+ R
Sbjct: 301 DKDWKGQKLYVGRAQKKHEREEELRKQYEAAR 332
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 161/333 (48%), Gaps = 57/333 (17%)
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
G SKG GFV FS P+EA++A+ EMN KM+ KPLYVA+AQRK+ R+++L+A +
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATIQARNQIR 499
Query: 229 MGP-----SVPPRMPMYPPGPSGLGQQ-FL--YGQAP--------------PAIIPPQAG 266
M +P + + P G GQQ F+ GQ P P +P Q G
Sbjct: 500 MQQAAAAAGMPTQQFVQPQMFFGPGQQPFMGGRGQMPFPQGMPAGGRGAGFPQGMPMQGG 559
Query: 267 FG--YQQQLVP-GMRPAGAPMPNFFVPVVS----------QGQQGQRPGGRRGAGPVQQT 313
G QQ+ P GM GAP+P P + Q G R GG RG P
Sbjct: 560 RGGPNAQQIPPMGMPFPGAPLPGGIPPQYNPAYAQMLAAQQAAMGGR-GGSRGPMPGMPG 618
Query: 314 QQPLPIMPHQMPPR---GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVG 370
+P M Q+P G R RN FP A P P G G+
Sbjct: 619 MPGMPQMAGQIPANNRGGPNNRGGANRNQPGFPSGRPAPGQAPTP---GEGVDL------ 669
Query: 371 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430
+AL +A+P QQ+ +LGE+LYP + ++ + A K+TGMLLEMD TE+++L
Sbjct: 670 ---------SALQSAAPPQQKQMLGEALYPKIHAMQPELAGKITGMLLEMDNTELINLTS 720
Query: 431 SPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 463
AL+AKV EAM V + Q + + P D+ A+
Sbjct: 721 DENALRAKVDEAMGVYQEYIQSKGDGPQDENAA 753
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ ++DD KA+E
Sbjct: 58 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEE 117
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 118 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDGAIDNKAL 161
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 162 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHI 221
Query: 209 RKEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 222 PKKDRMSKFEEMKANFTNV 240
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEATIQ 493
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 155/261 (59%), Gaps = 12/261 (4%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
+++ K++FV F+ K ER ++ +F NV+V+NL E+ T++ L ++F +YG ++S VVM
Sbjct: 39 MVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQYGIVSSVVVM 98
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RDG G+S+ GFVNF + ++A KAVE L G++ + +VGKA +K ER + LK F
Sbjct: 99 RDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDERMEMLKQHFRD- 157
Query: 122 MKETVDK--FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
++ K N+Y+KNL +S++D +L+E+F +G I S KVMR +G SKG GFV F
Sbjct: 158 --NSIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRSKGFGFVCF 215
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-QMRPVAMGPSVP-PRM 237
S EE+ +A +N + KPL V V +RKE+ RL F Q R P VP P
Sbjct: 216 SNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLHQYFHGQPRHYTQAPLVPSPTQ 272
Query: 238 PM--YPPGPSGLGQQFLYGQA 256
P+ Y P G Q F G +
Sbjct: 273 PVLSYVPSSYGYLQPFHVGTS 293
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 145/418 (34%), Positives = 209/418 (50%), Gaps = 74/418 (17%)
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 127
SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL + ++
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 145
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF-------- 179
N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 146 -----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 200
Query: 180 ----------------STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
S+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 201 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 260
Query: 224 MRPVAMGPSVPPRMPMYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFG 268
P P P PSG + Q A PP Q
Sbjct: 261 RMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARP 320
Query: 269 YQQQLVPG-MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPR 327
+ Q +PG +RPA AP P F + Q + +R A QT P P
Sbjct: 321 HPFQNMPGAIRPA-APRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA------- 372
Query: 328 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALST 380
A P R + + + G + P P+ ++ QP P+TA +
Sbjct: 373 AAAAATPAVRTVPQYKYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--S 424
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D E LH+LE PE+L++K
Sbjct: 425 MLASAPPQEQKQMLGEGLFPLIQAMHPTLAGKITGMLLEIDNLE-LHMLEPPESLRSK 481
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 77/148 (52%), Gaps = 26/148 (17%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 115 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 174
Query: 59 VVMRDGDGKSKCFGFVNFENADD------------------------AAKAVEALNGKKF 94
VM D GKSK FGFV+FE +D A KAV +NG+
Sbjct: 175 KVMTDESGKSKGFGFVSFERHEDAQKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 234
Query: 95 DDREWYVGKAQKKSEREQELKGQFEQAM 122
+ YV AQ+K ER+ L Q+ Q M
Sbjct: 235 ATKPLYVALAQRKEERQAHLTNQYMQRM 262
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 126/177 (71%), Gaps = 3/177 (1%)
Query: 69 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 128
+ F FVNFE + AA AVEALNG + + + YVG+AQKK+ERE L+ Q EQ + + K
Sbjct: 469 RGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQK 528
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 188
Q +NL++KNL D +D+ +L+E FS FGTITS ++MRD G+SKG GFVAFS P+EA +A
Sbjct: 529 LQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKA 588
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRM--PMYPPG 243
+ EMN +++ KP+YVA+AQRK++RRA+++AQ + M M +PP + MY PG
Sbjct: 589 VTEMNQRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMRAQMS-FLPPGLAASMYVPG 644
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 101/187 (54%), Gaps = 34/187 (18%)
Query: 270 QQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH 329
Q ++ M PA PMP +P ++ G P G GA P M ++M G
Sbjct: 808 QARMAARMGPASGPMPGVSMPAMASG----LPTGL-GA----------PGMGYKM---GG 849
Query: 330 AYRYPLGRNMQDF----PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 385
A R P G M P GAG+ +P MG + AS QP+ + L ANA
Sbjct: 850 AMRAPPGGTMAGMVAMSPMTAGAGNTVPSGA-MGNMMIGSAAS--QPLTVQML----ANA 902
Query: 386 SPEQQRTLLGESLYPLVEQL-----ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
P+QQ+ +LGE LYPLV Q +R+ A K+TGMLLEMD +EVLHL+ESPEAL+ KV
Sbjct: 903 DPKQQKQILGERLYPLVYQQLVREGKRELAPKITGMLLEMDNSEVLHLVESPEALQEKVE 962
Query: 441 EAMEVLR 447
EA+EVL+
Sbjct: 963 EALEVLQ 969
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 36/227 (15%)
Query: 1 MLINDKQVFVGHFLRKQERE-TVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSA 58
ML+N ++V+VG F ++ERE T + TKF NV+VKNLDES T E++ K+F YG ITS
Sbjct: 330 MLLNGQKVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITSI 389
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
F+ E + E D+ +A ++ R+ +
Sbjct: 390 --------------FIPTETVQEQQPHHE-------DEHRAPSEEASSEAGRQGGSSQEV 428
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
+ A + + L +N D K E + ++ + +G FV
Sbjct: 429 KSAGADQSNAAPDLETSERN-----DGAKAPENRAHAQSVVRVR--------PRGFAFVN 475
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
F TPE+A+ A+ +NG + K LYV AQ+K ER A L+AQ Q+R
Sbjct: 476 FETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLR 522
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 16/198 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L +++L ++F G + S V RD +S + +VNF+N +DA +A++
Sbjct: 177 SLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDV 236
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
L ++Y G K + ++ ++++ +G N++IKNL SID++ L
Sbjct: 237 L--------QFYEGPLTKN----KPIRIMWKRSDPSQRRNPEG-NIFIKNLDKSIDNKAL 283
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG + SCK+ D G S G FV + A +++MNG ++ + +YV +
Sbjct: 284 YDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFR 343
Query: 209 RKEERRA--RLQAQFSQM 224
+ ER A L +F+ +
Sbjct: 344 PRREREATGELSTKFTNV 361
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI------------KTKFNNVFVKNLDESTTDEDLKKI 48
M +N K ++VG +K ERE + K + N+FVKNL + + L++
Sbjct: 492 MELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVNLFVKNLSDDVDENRLREE 551
Query: 49 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108
F +GTITS +MRD G SK FGFV F + D+A KAV +N + + YV AQ+K
Sbjct: 552 FSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMNQRIVGQKPIYVALAQRKD 611
Query: 109 EREQELKGQFEQAMK 123
+R +++ Q M+
Sbjct: 612 QRRAQIEAQRAAMMR 626
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALA 190
++LY+ +L + ++ L ELFS G + S +V RD + S G +V F PE+A RA+
Sbjct: 176 VSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAID 235
Query: 191 EM---NGKMIVSKPLYV 204
+ G + +KP+ +
Sbjct: 236 VLQFYEGPLTKNKPIRI 252
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 127/175 (72%), Gaps = 3/175 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R + +K F N++VKN++ TD++ +++F +YG ITSA
Sbjct: 212 MLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSA 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ D + GKS+ FGFVN+ N +DA KAV+ LN F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 272 SLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQ 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 172
+E A +E K+QG+NLY+KNL D +DDE+L+++F +G ITS KVMRD + + K
Sbjct: 332 YEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDVTPLDK 386
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V D G SK +GFV++E
Sbjct: 138 QRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A++A++++NG ++++ +VG K +R +E+K F N+
Sbjct: 198 TAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + D++ +ELF ++G ITS + D +G S+G GFV + E+A +A+ E+N
Sbjct: 245 YVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELN 304
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 305 DSDFHGQKLYVGRAQKKHEREEELRKQYEAAR 336
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 151/342 (44%), Gaps = 86/342 (25%)
Query: 6 KQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE + K + N++VKNL + DE+L+KIF YG
Sbjct: 311 QKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYG 370
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
ITSA VMRD + A+ AK K DD+E V E ++
Sbjct: 371 AITSAKVMRD---------VTPLDKAETDAKE------NKTDDKEKQV-----DGEPTED 410
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
G+ ++ M+E K + +I EK KV+ G SKG
Sbjct: 411 KNGEEQEDMEELEKKMDTV---------TIGGEK--------------KVL----GKSKG 443
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
GFV FS P+EA++A+ E+N KMI KPLYVA+AQRKE R+ +L+A V M
Sbjct: 444 FGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKTQLEASIQARNQVRMQQQA 503
Query: 234 PPRMPMYP----PGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFV 289
PM P P Q F+ P ++P Q +PGM AGA
Sbjct: 504 TAGGPMAPQFMQP------QMFMGPNGQPMMMPGGGRGAAQMPFMPGMPGAGA------- 550
Query: 290 PVVSQGQQGQRPG---GRRGAGPVQQTQQP-LPIMPHQMPPR 327
Q+G PG GP +Q P +P MP+ +PP+
Sbjct: 551 ------QRGGFPGMPQQGGRGGPQGMSQMPQMPQMPYGLPPQ 586
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +A+D +A+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTGHG----NVFIKNLDGAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D G SKG GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 166 HDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHI 225
Query: 209 RKEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 226 PKKDRMSKFEEMKANFTNI 244
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L A P QQ+ +LGE+LYP + + + A K+TGMLLEMD E+L L +AL+AKV E
Sbjct: 697 LNAAPPSQQKQILGEALYPKIHAQQPELAGKITGMLLEMDNHELLGLTTDDDALRAKVDE 756
Query: 442 AMEVLRSVAQQQA 454
AM V + Q+
Sbjct: 757 AMNVYEEYVKNQS 769
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LK+IF EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKL+E FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLKVKEKSRPPGVPVYIKNLDETIDDEKLREEFSSFGSISRAKVMVE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+M+ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 133/216 (61%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDEVD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ +F +++ S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRRFERLK--VKEKSRPPGVPVY 305
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD + +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + G V
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDEV 210
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R + +K F N++VKN+D TTD++ +++F +YG ITSA
Sbjct: 204 MLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSA 263
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GK + FGFVN+ +DA KAV+ LN F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 264 SLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQY 323
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
E +E K+ G+NLY+KNL D IDDE+L+++F +G+ITS KVMRD +
Sbjct: 324 EAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRDTT 373
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V +D G S+ +GFV++E
Sbjct: 130 QRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGGSRGYGFVHYE 189
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++++NG ++++ +VG K +R +E+K F N+
Sbjct: 190 TAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF-------------TNI 236
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ +ELF ++G ITS + RD G +G GFV + E+A++A+ E+N
Sbjct: 237 YVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELND 296
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
S+ LYV AQ+K ER L+ Q+ R
Sbjct: 297 IDFKSQKLYVGRAQKKHEREEELRRQYEAQR 327
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +A+D +A+E
Sbjct: 54 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 113
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T N++IKNL +ID++ L
Sbjct: 114 LNYTLIKGKPCRIMWSQR------------DPALRKTGHG----NIFIKNLDAAIDNKAL 157
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D SG S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 158 HDTFAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHI 217
Query: 209 RKEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 218 PKKDRMSKFEEMKANFTNI 236
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 67/181 (37%)
Query: 6 KQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE + K N++VKNL + DE+L+K+F YG
Sbjct: 302 QKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYG 361
Query: 54 TITSAVVMR-----------------DGD------------------------------- 65
+ITSA VMR DG+
Sbjct: 362 SITSAKVMRDTTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEELTKKLDTVTI 421
Query: 66 -------GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
GKSK FGFV F N D+A KAV LN K + YV AQ+K R+ +L+
Sbjct: 422 GGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASI 481
Query: 119 E 119
+
Sbjct: 482 Q 482
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 122/166 (73%), Gaps = 2/166 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D TDED +++F ++G ITSA
Sbjct: 199 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + AA AV+ LN +F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 SIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 164
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KV+
Sbjct: 319 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVI 364
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE +ELF + G ITS + RD G S+G GFV + E A+ A+ +N
Sbjct: 232 YVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 292 IEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +++D KA+E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 109 LNYTVIKGKPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDHAIDNKAL 152
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ ++A F+ +
Sbjct: 213 PKKERMSKFEEMKANFTNI 231
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 440 AEAMEV 445
EAM V
Sbjct: 713 DEAMSV 718
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 65/179 (36%)
Query: 6 KQVFVGHFLRKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE + ++K+ N+++KNL++ DE L+ +F +G
Sbjct: 297 QKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFG 356
Query: 54 TITSAVVM------------------------------------------RDGD------ 65
TITSA V+ + GD
Sbjct: 357 TITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKG 416
Query: 66 -----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 417 EKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 475
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 120/168 (71%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R + +K F N++VKN+D TD++ + +F +YG ITSA
Sbjct: 207 MLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSA 266
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFVN+ +DA KAVE LN F + YVG+AQKK ERE+EL+ Q+
Sbjct: 267 SLAHDQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQY 326
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E +E K+QG+NLY+KNL D IDD++L+++F +G ITS KVMRD
Sbjct: 327 EAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAITSAKVMRD 374
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 133 QRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 192
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++++NG ++++ +VG K +R +E+K F N+
Sbjct: 193 TAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF-------------TNI 239
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ D++ + LF ++G ITS + D G S+G GFV + E+A++A+ E+N
Sbjct: 240 YVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEELNN 299
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 300 SDFKGQALYVGRAQKKHEREEELRKQYEAQR 330
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +A+D +A+E
Sbjct: 57 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 116
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + + Q + A+++T QG N++IKNL +ID++ L
Sbjct: 117 LNYTLIKGKPCRI------------MWSQRDPALRKT---GQG-NVFIKNLDGAIDNKAL 160
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 161 HDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHI 220
Query: 209 RKEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 221 PKKDRMSKFEEMKANFTNI 239
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV LN K + YV AQ+K R+ +L+ +
Sbjct: 439 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQ 492
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 132/205 (64%), Gaps = 5/205 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ K++ V F++K ER A F N++VKNLDE+ T++ LK +F G ++S +M
Sbjct: 168 MLGGKKLHVCKFVKKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIM 227
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
D +GKSK FGFVNF++ DDA KAV+ +NG + +VGKAQ+KSER LK +++
Sbjct: 228 MDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDL 287
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ +K + NLY+KNL IDD+KLKE+FS +G I S KV+ G SK GFV F++
Sbjct: 288 HNRSTEKLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFAS 347
Query: 182 PEEASRALAEMNGKMIVSKPLYVAV 206
PEEA++AL +NG PL+ +V
Sbjct: 348 PEEANKALVALNG-----HPLFFSV 367
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 13/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A KT F N+FVKNLD S + L+ IF +YGTI S V + +G+SK FGFV FE
Sbjct: 94 QRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGE-NGRSKGFGFVQFE 152
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ D A A AL+ ++ +V K KK+ER + NLY+K
Sbjct: 153 SQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFT------------NLYVK 200
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL ++I ++ LK++FS G ++S +M D G SK GFV F +P++A +A+ MNG +I
Sbjct: 201 NLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVI 260
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
SK L+V AQRK ER L+ ++ +
Sbjct: 261 GSKTLFVGKAQRKSERTMILKQEYKDLH 288
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 26/191 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD T+ DL+ F G I+S + R GKS C+ +VN + A++A+
Sbjct: 18 SLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGL 77
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLYIKNLGDSID 144
LN LKG+ + M D F G NL++KNL SI
Sbjct: 78 LN--------------------HTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSIS 117
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
L+ +FS++GTI SCKV + +G SKG GFV F + + A A ++ M+ K L+V
Sbjct: 118 SSCLESIFSKYGTILSCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHV 176
Query: 205 AVAQRKEERRA 215
+K ER A
Sbjct: 177 CKFVKKTERTA 187
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 138/204 (67%), Gaps = 5/204 (2%)
Query: 42 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101
DE LK +FG++G S VM D G SK FGFV+F+ +D KAV+ +NGK+ + ++ Y+
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 102 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161
+A K +E + EL+ +FE ++ ++QG+NLY+KNL D ID+ L++ FS FGTIT
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
K M + G S+G GFV FS+PEEA++A+ EMNG+++ +KPL VA+AQRKEER+A L Q+
Sbjct: 123 KFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQY 181
Query: 222 SQMRPVAMGPSVPPRMPMYPPGPS 245
M+ +A +VP P+ P S
Sbjct: 182 --MQRMASVRAVPN--PVILPATS 201
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
+DDE+LK+LF +FG S KVM D G SKG GFV+F E+ +A+ E+NGK + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 203 YVAVAQRKEERRARLQAQFSQM 224
Y++ A + E + L+ +F M
Sbjct: 61 YISRAHKTAEWQTELRCKFEHM 82
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 15/133 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ+++ + E +T ++ KF N++VKNLD+ + L+K F
Sbjct: 55 LNRKQIYISRAHKTAEWQT-ELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEF 113
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTIT A M +G G S+ FGFV F + ++A KAV +NG+ + V AQ+K E
Sbjct: 114 SPFGTITGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEE 172
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 173 RQAHLTNQYMQRM 185
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 211/447 (47%), Gaps = 90/447 (20%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 67
++V +F+R+ R A+ F NV++K + + ++K F ++G ITSA + +D +G+
Sbjct: 183 LYVANFIRRNAR-LAALVANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGR 241
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQFEQAM 122
+ F F NFE DDA KA+E + + + + YV +AQ +SER L+ ++ Q
Sbjct: 242 A--FAFCNFEKHDDAVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQ 299
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
G NLY++N ++ L ELF E+G I SC+VM D +G+S+G GFV+F
Sbjct: 300 S------LGNNLYVRNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENA 353
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPP 242
++A+ AL EM+G+M+ KPL V +AQR+++R F+ +R ++PP
Sbjct: 354 DQANAALREMSGRMLNGKPLVVNIAQRRDQR-------FTMLRLQLQQRLQMMMRQIHPP 406
Query: 243 GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPG 302
P G+ +Q MP QR
Sbjct: 407 -PFGMPRQ---------------------------------MP-------------QRRR 419
Query: 303 GRRGAGPVQQTQQP-LPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAG 361
GR+ P Q P LP+MP + PR + P MG + P A
Sbjct: 420 GRQ--HPRGHDQMPSLPVMPPVI-PRNDMFNTP----------SMGVSAAPRTPQASPAT 466
Query: 362 IPRRDASVGQPMP-ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
P P+P ITA L N + E+QR LG+ LY V +L D A K+TGM LEM
Sbjct: 467 APD-----TPPLPPITA--EDLQNMTMEEQRAALGDRLYIKVYELAPDHAPKITGMFLEM 519
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLR 447
+ E LL + L+ KV EA+ VL+
Sbjct: 520 NPKEAHTLLTNQRLLQDKVTEALCVLK 546
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 23/210 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + ++ L +IF YGTI + V RD +S +G+VN++NA+ A KA+E
Sbjct: 22 SLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAMEE 81
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 147
+N K+ VG E+ ++ ++Q ++ ++ G N+++KNL +D +
Sbjct: 82 MNFKR-------VG--------EKCIRIMWQQ--RDPALRYSGNGNVFVKNLKGEVDSRE 124
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLY 203
L +F +FG I SCKVM D SG S+G GFV F A A+ MNG + LY
Sbjct: 125 LSLIFKKFGEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALY 184
Query: 204 VAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
VA R+ R A L A F+ + + P+V
Sbjct: 185 VANFIRRNARLAALVANFTNVYIKQILPTV 214
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEAS 186
+ Q +LY+ +L +I + +L E+F +GTI + +V RD + S G G+V + A+
Sbjct: 17 QLQVASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSAT 76
Query: 187 RALAEMNGKMIVSKPLYVAVAQR 209
+A+ EMN K + K + + QR
Sbjct: 77 KAMEEMNFKRVGEKCIRIMWQQR 99
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 TGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 TGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 120/166 (72%), Gaps = 2/166 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK+IF +YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSI 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 RVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 164
EQ ++ + ++QG+NLY+KNL D +DDE+L++ FS FGTITS KVM
Sbjct: 281 EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM 326
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE E+ + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFT----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+F ++G S +VM D SG SKG GFV+F E+A RA+ EMNGK + K +YV
Sbjct: 204 DEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ +F QM+
Sbjct: 264 GRAQKKGERQTELKRKFEQMK 284
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPVAM 229
++ER A + A+ + V +
Sbjct: 175 SRKEREAEMGARAKEFTNVYI 195
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 TGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 554 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 611
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 612 SLRSKVDEAVAVLQA 626
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 6/215 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTIT 56
+ +N++QV+VG F +ER ++T+ F NVFVKNL ++ DE LK++F EYG
Sbjct: 168 VWLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTE 226
Query: 57 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 116
S V+RD GKSK FGFV +E + A K+V L+GK D + YVG+AQKK ER EL+
Sbjct: 227 SVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRR 286
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+FE+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG
Sbjct: 287 RFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMME-MGQGKGFAV 345
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
V FS+ EEA++A+ EMNG ++ SKPL V + Q +
Sbjct: 346 VCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQARH 380
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 134/216 (62%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+K+LD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG ++R+ YVG+ + ER E++ T D+ N+++KNLGD++D
Sbjct: 161 AIWHMNGVWLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNLGDNMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELFSE+G S KV+RD SG SKG GFV + T E A +++ +++GK I K LYV
Sbjct: 212 DEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ +F +++ S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRRFERLK--LKEKSRPPGVPIY 305
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +L T++ L K F G + + RD S +G+VNF DA A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IK+L SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKHLDKSIDNRTLFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G ++
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNLGDNM 210
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
DDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 204 VAVAQRKEERRARLQAQFSQ 223
VA+AQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 15/131 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
++ K +FVG +K ER+ +K KF N+++KNLD++ DE L+K F
Sbjct: 11 MSGKSIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 69
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 70 SPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 128
Query: 110 REQELKGQFEQ 120
R+ L Q+ Q
Sbjct: 129 RKAHLTNQYMQ 139
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 324 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 381
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 382 SLRSKVDEAVAVLQA 396
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 571 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 628
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 629 SLRSKVDEAVAVLQA 643
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 555 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 612
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 613 SLRSKVDEAVAVLQA 627
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 63 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 121
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 122 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 171
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 172 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 231
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 232 SGKIIFVGRAQKKVERQAELKRKFEQLK 259
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 18/177 (10%)
Query: 45 LKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103
L + F G + S V RD +S + +VNF+ DA +A++ +N + +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
+Q+ + G N++IKNL SID++ L + FS FG I SCKV
Sbjct: 62 SQRDPSLRKSGVG----------------NVFIKNLDKSIDNKALYDTFSAFGNILSCKV 105
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 220
+ D +G SKG FV F T E A +A+ +MNG ++ + ++V + ++ER A L A+
Sbjct: 106 VCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 161
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 544 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 601
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 602 SLRSKVDEAVAVLQA 616
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 NGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 128/195 (65%), Gaps = 6/195 (3%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ DKQ++VG F+RK ER + KF N++VKNLD T++ L + F +G I S + +
Sbjct: 168 VRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKK 227
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF-EQA 121
D +G+SK FGFVN+++ DDA +A+EA++G +F + YV +AQKK EREQ L F E+
Sbjct: 228 DENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKG 287
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+K G N+Y+KN+ S+ DE+L++ FS G + S KVMRD G SKG GFV FST
Sbjct: 288 LKH-----MGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFST 342
Query: 182 PEEASRALAEMNGKM 196
EA ++++ NG++
Sbjct: 343 VVEAFKSMSCFNGEL 357
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 14/216 (6%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ A K+ NVFVKNL S + L +F +YG I S+ + R DGKSK FG++ F++
Sbjct: 93 RDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDS 152
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-ELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG D++ YVGK +KSER +L +F NLY+K
Sbjct: 153 EESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFT-------------NLYVK 199
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + ++ L E FS FG I S + +D +G SKG GFV + +P++A RA+ M+G
Sbjct: 200 NLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQF 259
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
SK LYVA AQ+K ER L F + MG ++
Sbjct: 260 GSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNI 295
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
++V +L TD L K F E+ T+ SA V +D GKS C+G+VN + +A +A+E
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + V + ++ + KG N+++KNL SID+ L
Sbjct: 77 NHSSLNGKVIRVMWLSRDADARKSGKG----------------NVFVKNLAASIDNVGLH 120
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF ++G I S K+ R G SKG G++ F + E A+ A+ +MNG + K +YV R
Sbjct: 121 DLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIR 180
Query: 210 KEERRA-RLQAQFSQMRPVAMGPSVPPR 236
K ER L A+F+ + + P V +
Sbjct: 181 KSERSLPDLDAKFTNLYVKNLDPVVTEK 208
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 136/210 (64%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE L K+F EYG S
Sbjct: 169 LNNRQVYVGRFKFPEER-AAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESV 227
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + VG+AQKK ER EL+ +F
Sbjct: 228 KVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 287
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + ++ G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 288 ERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVC 346
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA +A+ EMNG++I SK L+V + Q
Sbjct: 347 FSSFEEACKAVDEMNGRIIGSKTLHVTLGQ 376
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 130/216 (60%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD++ + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 101 KSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 159
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T ++ N+++KN GD ID
Sbjct: 160 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRERATFTNVFVKNFGDDID 210
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKL +LFSE+G S KV+RD +G SKG GFV + T E A +A+ E++GK I K L V
Sbjct: 211 DEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCV 270
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ +F +++ + P +P+Y
Sbjct: 271 GRAQKKIERLAELRRRFERLK--LKEKNRPSGVPIY 304
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL +ID+ L L
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKTIDNRALFYL 124
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 125 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 183
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + G +
Sbjct: 184 ERAAEVRTRERATFTNVFVKNFGDDI 209
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 6/213 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LKK+F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + VG+AQKK ER EL+ +F
Sbjct: 229 KVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS+ EEAS+A+ EMNG+++ SK L+V + Q +
Sbjct: 348 FSSFEEASKAVNEMNGRVVGSKTLHVTLGQARH 380
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 132/216 (61%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLK+LFSE+G S KV+RD +G SKG GFV + T E A +A+ E++GK I K L V
Sbjct: 212 DEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ +F +++ + PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRRFERLK--LKDKTRPPGVPIY 305
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDI 210
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 132/179 (73%), Gaps = 4/179 (2%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ERE + K K F NV+VKN E TD+ LK++F +YG ITS
Sbjct: 164 MLLNGKKVFVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSH 223
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-DDREWYVGKAQKKSEREQELKGQ 117
V+ + D KS+ FGFV FE+ + A +AVE LNGK+ + ++ YVG+AQKK+ER+QELK +
Sbjct: 224 TVVVNKDQKSRGFGFVAFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRK 283
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
FEQ E ++++QG+NLY+KNL D+IDDE+L++ FS FGTITS KVM + SKG GF
Sbjct: 284 FEQLKMERMNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD++ ++ + F +G I S V +D G SK +GFV+FE + A K
Sbjct: 97 KSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATK 156
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
+++ +NG + ++ +VGK + ERE+EL E+A T N+Y+KN G+
Sbjct: 157 SIDKVNGMLLNGKKVFVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFGEDFT 206
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLY 203
D+ LKE+F ++G ITS V+ + S+G GFVAF PE A RA+ ++NGK I+ K LY
Sbjct: 207 DDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLNGKEIIEGKQLY 266
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+ L+ +F Q++
Sbjct: 267 VGRAQKKAERQQELKRKFEQLK 288
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T L + F G + S V +D +S + +VNF+ DA +A++
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL +ID++ +
Sbjct: 74 MNFDTLKGRPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKNIDNKAM 117
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV +D SG SKG GFV F T E A++++ ++NG ++ K ++V
Sbjct: 118 YDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFI 177
Query: 209 RKEERRARL 217
++ER L
Sbjct: 178 PRKEREKEL 186
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LK+LFS+FG S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 GGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKNL + DE LK++F EYG I S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL +SIDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDESIDDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SK L+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 131/216 (60%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KNLGD ++
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNLGDDMN 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELFSE+G I S KV+RD SG SKG GFV + T E A +A+ E++GK + K LYV
Sbjct: 212 DEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRGLFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LK+IF EYG+ S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRAPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 120/191 (62%), Gaps = 10/191 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FSE+G+ S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRA 215
AQ+K ER A
Sbjct: 272 GRAQKKIERLA 282
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 118/167 (70%), Gaps = 2/167 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+++F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 165
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS K R
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL + A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGAR---ALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L+ELFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 121/167 (72%), Gaps = 2/167 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN+ TD++ +++F +G +TS+
Sbjct: 206 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSS 265
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ R+ DGKS+ FGFVNF + AAKAVE LN K +E YVG+AQKK ERE+EL+ +
Sbjct: 266 SIAREQDGKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSY 325
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 165
E A E K+QG+NLYIKNL D +DD+KL+ +F+EFG ITS KVMR
Sbjct: 326 EAARIEKASKYQGVNLYIKNLDDDVDDDKLRIMFAEFGPITSAKVMR 372
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGSSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A +A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 192 TDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + D++ +ELF G +TS + R+ G S+G GFV F+T E A++A+ E+N
Sbjct: 239 YVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELNN 298
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + + LYV AQ+K ER L+ + R
Sbjct: 299 KDLHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 375 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 434
I+AL ++ A P QQ+ +LGE ++P ++ + + A K+TGMLLEMD +E+++L+E A
Sbjct: 645 ISALQAQISGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSELINLIEDDAA 704
Query: 435 LKAKVAEAMEVLRSVAQQQ 453
LK+KV EA+ V + Q
Sbjct: 705 LKSKVDEALAVYDEYVKTQ 723
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM 192
LY+ L S+ + L ELFS+ G + S +V RD + S G +V +++ + +AL E+
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 193 NGKMIVSKPLYVAVAQR 209
N +I +P + +QR
Sbjct: 117 NYTLIKGRPCRIMWSQR 133
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 71 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
FGFV F N DDA KAV +N + + + YV AQ+K R+ +L+ +
Sbjct: 429 FGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQ 477
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 164/512 (32%), Positives = 244/512 (47%), Gaps = 105/512 (20%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
+E V T+ +VFV L + E LK++FG G + SAVVMRD G S+ FGFVNF
Sbjct: 14 QEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTK 73
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL---NLY 135
AD+A +A++ N W V KA+K+ + ++ GQ + QGL NL+
Sbjct: 74 ADEADRAIQQFNKIPHCAGTWLVRKAEKR--KPEQKAGQVSE---------QGLDLCNLF 122
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNG 194
I+ + I +L+ +F FG + S K++ DP +G SK +GF+ F+ PEEA+RA+ EMNG
Sbjct: 123 IRGVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNG 182
Query: 195 KMIVSKPLYVAVAQRK--EERRARLQAQFSQMRPVAMGPSVPPRM----------PMYPP 242
K + SK L+V +AQ++ + + + F Q A PS P M P YP
Sbjct: 183 KQVGSKRLFVTLAQKRATTDPQGIIHPPFEQ---SAAQPSTPTGMAYFMPMSGMAPQYPQ 239
Query: 243 GPSGLGQQFLYGQAPPAIIP--PQA---GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQ 297
G G YG PP ++P PQA G+G QLV G PM F Q
Sbjct: 240 GAHGHPAFQPYGMYPPGMVPIHPQAYQQGYGPPPQLV----WQGMPMAAF---------Q 286
Query: 298 GQRPGGRRGAGPVQQTQQPLPIMPHQMPP----------------RGHAYRYPLGRN--- 338
G PG ++ A P ++Q + M G YR +GR
Sbjct: 287 GMPPGYQQ-ADPRAISRQQQAQQYYMMTSGQDGTYFDMASNSFMHSGRGYRSHMGRGAAT 345
Query: 339 --------MQDFPFDMGAGSM------LPVPVDMGAG-IPRRDASVG-----QPMPITAL 378
Q FP + + + VP+ + + + RRD + G P L
Sbjct: 346 PRGGGRRGRQLFPEPPASNHLGQPRAPVKVPLTVNSKPVARRDVAPGAAPKDAPTNTKDL 405
Query: 379 STALANASPEQ--QRTLLGESLYPLVEQLE--RDAAAKVTGMLLEMDQTEVLHLLESPEA 434
LA A+P++ + +++G+ L+ LV+ L+ +D +AK+TGMLLEM + E+LH+LE A
Sbjct: 406 VARLA-ATPDKLVRVSMMGDLLFTLVQGLQPAKD-SAKITGMLLEMTEPEILHILEDRAA 463
Query: 435 LKAK-----------VAEAMEVLRSVAQQQAN 455
L K V EA+ VL++ ++A
Sbjct: 464 LIKKARHPSHSGICSVDEALGVLKAAGYKEAK 495
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 165
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS K R
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL + A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGAR---ALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G I S +V RD + S G ++ F P +A RAL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN +M+ +P+ + +QR
Sbjct: 72 MNFEMLKGQPIRIMWSQR 89
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 61 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 209 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 246
RKEER+A L Q+ Q P P P PSG
Sbjct: 120 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 157
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 15/133 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
+N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 6 LNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF 64
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 65 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 123
Query: 110 REQELKGQFEQAM 122
R+ L Q+ Q M
Sbjct: 124 RQAHLTNQYMQRM 136
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 132/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELF +FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQFSQMRPV 227
++ER A L A+ + V
Sbjct: 175 SRKEREAELGAKAKEFTNV 193
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 569 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 626
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 627 SLRSKVDEAVAVLQA 641
>gi|2213871|gb|AAB61594.1| poly(A)-binding protein, partial [Mesembryanthemum crystallinum]
Length = 176
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 128/178 (71%), Gaps = 11/178 (6%)
Query: 301 PGGRRGAG-PVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLP-VPVDM 358
P GRR G PVQQ+QQ M Q YRYP R + D P G +LP V DM
Sbjct: 1 PTGRRAGGAPVQQSQQQPIPMMQQQMMPRGRYRYPPARGLPDAPLPGVTGGVLPGVQYDM 60
Query: 359 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 418
G G+P RD S +P+ L+T LANA+PEQQR LLGE+LYPLVEQLE + AAKVTGMLL
Sbjct: 61 G-GMPIRDLS--PTVPVGTLATLLANATPEQQRLLLGENLYPLVEQLEPEMAAKVTGMLL 117
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ------ANNPADQLASLSLNENL 470
EMDQTEVLHLLESPEALK+KVAEAMEVLR+VAQQQ ++NPADQLA+LSLN+NL
Sbjct: 118 EMDQTEVLHLLESPEALKSKVAEAMEVLRNVAQQQQQQQQPSSNPADQLAALSLNDNL 175
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 120/162 (74%), Gaps = 4/162 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
LI ++ + V F+ + + + + F NV+VKNL E+ TD DLK++FGE+G ITSAVVM
Sbjct: 166 LIRNQHIHVCPFVSRGQWDKSRV---FTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 222
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-Q 120
+DG+GKS+ FGFVNFE A+ A A+E +NG D++E +VG+AQ+K+ R ++LK +FE +
Sbjct: 223 KDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELE 282
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 162
+ + +G+NLY+KNL DS+D+ KL+ELFSEFGTITSCK
Sbjct: 283 KIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCK 324
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNLDES ++ L +F +G + S V RD G SK +GFV F + A
Sbjct: 103 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 162
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ +V + GQ++++ T N+Y+KNL ++ D LK
Sbjct: 163 NGTLIRNQHIHVCPFVSR--------GQWDKSRVFT-------NVYVKNLVETATDADLK 207
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
LF EFG ITS VM+D G S+ GFV F E A A+ +MNG ++ K L+V AQR
Sbjct: 208 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 267
Query: 210 KEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
K R L+A+F ++ + M +Y
Sbjct: 268 KTNRTEDLKAKF-ELEKIIRDMKTRKGMNLY 297
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 35 NLDESTTDEDLKKIFGEYG-TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGK 92
+LD S + DL F E+ I+S V D + G S +G+VNF ++ A A+E LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 93 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
K + + +++ +G N+++KNL +SID+++L ++F
Sbjct: 79 KLKGKPMRIMFSERDPSNRMSGRG----------------NVFVKNLDESIDNKQLCDMF 122
Query: 153 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
S FG + SCKV RD SG+SKG GFV F + A NG +I ++ ++V
Sbjct: 123 SAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVC 175
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 141/210 (67%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ D VFV F +++RE + ++F NV++KNL ++ DE LK IF +YG S
Sbjct: 161 LLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVK 220
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM+D +GKSK FGFV+F N + A AVE +NG+ + + +VG+AQKK ER+ ELK +FE
Sbjct: 221 VMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFE 280
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q KE + Q LYIKNL ++IDDE L+ FS FG+I KVM++ +G SKG G + F
Sbjct: 281 QMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQE-AGQSKGFGLICF 339
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+PE A++A+AEMNG+++ SK L +A+ Q+
Sbjct: 340 FSPEAAAKAMAEMNGRILGSKALNIALGQK 369
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 130/209 (62%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D +G S+ +GFV+++
Sbjct: 87 QRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG-SRGYGFVHYQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NGK D +V + + + +RE EL+ + + N+YIK
Sbjct: 146 DQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRSKTSEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NLGD++DDE LK +FS++G S KVM+D +G SKG GFV+F E A A+ EMNG+ I
Sbjct: 196 NLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRP 226
+ ++V AQ+K ER+A L+ +F QM+
Sbjct: 256 NGQTIFVGRAQKKVERQAELKEKFEQMKK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 24/204 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L E T++ L + F G + S + RD +S + +VNF DDA KA++
Sbjct: 11 SLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKALDT 70
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDD 145
+N FD GK+ + S+R+ L+ G+ N++IKNL SID+
Sbjct: 71 MN---FD---LIQGKSIRLMWSQRDAYLRKS-------------GIGNVFIKNLDKSIDN 111
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L E FS FG I S KVM D G S+G GFV + A RA+ EMNGK++ ++V
Sbjct: 112 KTLYEHFSPFGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVD 170
Query: 206 VAQRKEERRARLQAQFSQMRPVAM 229
+ +++R A L+++ S+ V +
Sbjct: 171 RFKSRKDREAELRSKTSEFTNVYI 194
>gi|262192741|gb|ACY30440.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 99
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 166 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
DPSG+SKGSGFVAFSTPEEASRAL+EMNGKM+VSKPLYVA+AQRKEERRARLQAQFSQMR
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 60
Query: 226 PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 263
P+AM SV PRMPMYPPG GLGQQ YGQ PA++PP
Sbjct: 61 PIAMASSVAPRMPMYPPGGHGLGQQIFYGQPQPAMLPP 98
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
D G SK GFV F ++A++A+ +NGK + YV AQ+K ER L+ QF Q
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 58
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ E DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+G+ ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGEDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK + K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGEDI 210
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 120/162 (74%), Gaps = 4/162 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
LI ++ + V F+ + + + + F NV+VKNL E+ TD DLK++FGE+G ITSAVVM
Sbjct: 95 LIRNQHIHVCPFVSRGQWDKSRV---FTNVYVKNLVETATDADLKRLFGEFGEITSAVVM 151
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-Q 120
+DG+GKS+ FGFVNFE A+ A A+E +NG D++E +VG+AQ+K+ R ++LK +FE +
Sbjct: 152 KDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELE 211
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 162
+ + +G+NLY+KNL DS+D+ KL+ELFSEFGTITSCK
Sbjct: 212 KIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCK 253
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNLDES ++ L +F +G + S V RD G SK +GFV F + A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ +V + GQ++++ T N+Y+KNL ++ D LK
Sbjct: 92 NGTLIRNQHIHVCPFVSR--------GQWDKSRVFT-------NVYVKNLVETATDADLK 136
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
LF EFG ITS VM+D G S+ GFV F E A A+ +MNG ++ K L+V AQR
Sbjct: 137 RLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 210 KEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
K R L+A+F ++ + M +Y
Sbjct: 197 KTNRTEDLKAKF-ELEKIIRDMKTRKGMNLY 226
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKNL + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKDKSRPPGVPIYIKNLDETIDDEKLKEEFSPFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+ + SKPL+V + Q
Sbjct: 348 FSSFEEAAKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KNLGD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNLGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELFSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKDKSRPPGVPIY 305
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEAS+A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEASKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 130/216 (60%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ + R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRR--FERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 136/209 (65%), Gaps = 4/209 (1%)
Query: 3 INDKQVFVGHFLRKQERET---VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
+N++QV+VG F +ER K F NVFVKNL + DE LK +F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVK 229
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
++RD GKSK FGFV +E D A KAV L+GK D + YVG+AQKK ER EL+ +FE
Sbjct: 230 LVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAELRRRFE 289
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ + + G+ +YIKNL ++ID+EKLKE FS FG+I+ KVM + G KG G + F
Sbjct: 290 RLRLKEKSRPPGVPIYIKNLDETIDEEKLKEEFSAFGSISRAKVMME-VGQGKGFGVICF 348
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQ 208
S+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 349 SSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T DK N+++KNLGD +D
Sbjct: 161 AIWHMNGVQLNNRQVYVGRFKFPEERAAEVR---------TRDKATFTNVFVKNLGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLK LFSE+G S K++RD SG SKG GFV + T + A +A+ +++GK + K LYV
Sbjct: 212 DEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRSLFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDKATFTNV 201
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 139/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELFSE+G S KV+RD G SKG GFV + T E A +A+ +++GK + K LYV
Sbjct: 212 DEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 138/210 (65%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL +SI DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDESISDEKLKEEFSSFGSISRAKVMME-VGHGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDDHG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELFSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ + R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRR--FERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 7/220 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI K+V V FLRKQ+RET + T N++V+N +E L++ +YG ITS ++
Sbjct: 178 MLIGGKKVEVAPFLRKQDRETEEVYT---NLYVRNFPADWDEEALRQFLEKYGEITSMML 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQF 118
D G+ F FVN++ A A + V LN K ++ V Q K +R+ LK QF
Sbjct: 235 KEDSKGRR--FAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQF 292
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
DK NLYIKNL D+ DD L ELF +FGTITS KVM D + S+G GFV
Sbjct: 293 STVSPGQDDKRLTSNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLDANNNSRGFGFVC 352
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 218
FS P+EA++A+A M+ K++ KPLYV +A+++++R R+Q
Sbjct: 353 FSNPQEATKAIAAMHLKLVKGKPLYVGLAEKRDQRLMRMQ 392
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 19/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S + L F +GTI S V D G S+ +GFV++E+ + A +A+E +
Sbjct: 116 NIFVKNLDKSIDTKSLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKV 175
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG ++ V +K +RE E E NLY++N D+E L+
Sbjct: 176 NGMLIGGKKVEVAPFLRKQDRETE----------EVY-----TNLYVRNFPADWDEEALR 220
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+ ++G ITS + D G + FV + A + +N + S PL V
Sbjct: 221 QFLEKYGEITSMMLKEDSKG--RRFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPH 278
Query: 208 QRKEERRARLQAQFSQMRP 226
Q K +R+ L+AQFS + P
Sbjct: 279 QDKVKRQNMLKAQFSTVSP 297
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L ++F G + S V RD KS + +VN+ + DA A+E
Sbjct: 28 SLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALEN 87
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSID 144
LN Y+ E+KG + M D K N+++KNL SID
Sbjct: 88 LN---------YI-----------EIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSID 127
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ L + F+ FGTI SCKV D +G S+ GFV + + E A A+ ++NG +I K + V
Sbjct: 128 TKSLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEV 187
Query: 205 AVAQRKEER 213
A RK++R
Sbjct: 188 APFLRKQDR 196
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LL+ + LKAK+ EA+ VL+
Sbjct: 596 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNQELLQLLDDNDQLKAKIDEAIRVLK 653
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGDILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMLE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 140/210 (66%), Gaps = 3/210 (1%)
Query: 2 LINDKQVFVGHFLRKQERETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
L+ + +FV F +++RE T+F NV++KN + DE L+++F +YG S
Sbjct: 161 LLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVK 220
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VM+D GKSK FGFV+F++ + A AVE +NG+ + + +VG+AQKK ER+ ELK FE
Sbjct: 221 VMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFE 280
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q KE + Q LYIKNL D+IDDE L++ FS FG+I KVM++ +G SKG G + F
Sbjct: 281 QMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICF 339
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+PE A++A+AEMNG+++ SKPL +A+ Q+
Sbjct: 340 FSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 133/210 (63%), Gaps = 13/210 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +GTI S+ VM DG+G SK +GFV+++
Sbjct: 87 QRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG-SKGYGFVHYQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK-FQGLNLYI 136
+ A +A+E +NGK + +V + + + +RE EL+ DK + N+YI
Sbjct: 146 DRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELR-----------DKPTEFTNVYI 194
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KN GD +DDEKL+E+FS++G S KVM+D +G SKG GFV+F + E A A+ +MNG+
Sbjct: 195 KNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQD 254
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRP 226
I + ++V AQ+K ER+A L+ F QM+
Sbjct: 255 INGQTIFVGRAQKKVERQAELKEMFEQMKK 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 29/214 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L E T++ L + F G + S + RD +S + +VNF +DA KA+
Sbjct: 11 SLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALVT 70
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM---KETVDKFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M ++ + G+ N++IKNL SID
Sbjct: 71 MN---FD-----------------VIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSID 110
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L E FS FGTI S KVM D G SKG GFV + A RA+ EMNGK++ L+V
Sbjct: 111 NKTLYEHFSPFGTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFV 169
Query: 205 AVAQRKEERRARLQ---AQFSQMRPVAMGPSVPP 235
A + +++R A L+ +F+ + G V
Sbjct: 170 ARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDD 203
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 138 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 196
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 197 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 256
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 257 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 315
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 316 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 70 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 128
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 129 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 179
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 180 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 239
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 240 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 273
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 71 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 130
+G+VNF DA A+ +N + + + + +Q + G
Sbjct: 29 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVG-------------- 74
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
N++IKNL SID+ L LFS FG I SCKV+ D +G SKG +V F + A+RA+
Sbjct: 75 --NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 131
Query: 191 EMNGKMIVSKPLYVAVAQRKEER----RARLQAQFSQMRPVAMGPSV 233
MNG + ++ +YV + EER R R +A F+ + +G +
Sbjct: 132 HMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 178
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 155 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 213
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 214 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 273
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 274 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 332
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 333 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 362
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 87 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 145
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 146 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 196
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 197 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 256
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 257 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 290
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEAL 89
++V +LD T++ L K F G + + RD +S +G+VNF DA A+ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + + + +Q + G N++IKNL SID+ L
Sbjct: 65 NFDLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALF 108
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
LFS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV +
Sbjct: 109 YLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKF 167
Query: 210 KEER----RARLQAQFSQMRPVAMGPSV 233
EER R R +A F+ + +G +
Sbjct: 168 PEERAAEVRTRDRATFTNVFVKNIGDDI 195
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 139/211 (65%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ D +FV F +++RE ++ K F NV++KN + DE L+ +F +YG S
Sbjct: 161 LLRDSTLFVARFKSRKDREA-ELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM+D GKSK FGFV+F++ A AVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ KE + Q LYIKNL D+IDDE L++ FS FG+I KVM++ +G SKG G +
Sbjct: 280 EQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F +PE A++A+AEMNG+++ SKPL +A+ Q+
Sbjct: 339 FFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L + F +G I S+ VM D +G SK +GFV+++
Sbjct: 87 QRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NGK D +V + + + +RE EL+ E+ + T N+YIK
Sbjct: 146 DQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR---EKPAEFT-------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD +DDE L+ +FS++G S KVM+D SG SK GFV+F + + A A+ +MNG+ I
Sbjct: 196 NFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRP 226
+ ++V AQ+K ER+A L+ F QM+
Sbjct: 256 NGQTIFVGRAQKKVERQAELKEMFEQMKK 284
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 29/212 (13%)
Query: 22 VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 78
++++TK+ +++V +L E T++ L + F G + S + RD +S +G+VNF
Sbjct: 1 MSVETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQ 60
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGL-NLY 135
DA KA+E +N FD GK+ + S+R+ L+ G+ N++
Sbjct: 61 VGDAQKALETMN---FD---LIKGKSIRLMWSQRDACLRK-------------SGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG GFV + A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGK 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQ---AQFSQM 224
++ L+VA + +++R A L+ A+F+ +
Sbjct: 161 LLRDSTLFVARFKSRKDREAELREKPAEFTNV 192
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 44 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 102
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 103 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 162
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 163 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVC 221
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 222 FSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 251
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 12/189 (6%)
Query: 52 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 111
+G I S V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 112 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 171
E++ T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG S
Sbjct: 62 AEVR---------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS 112
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGP 231
KG GFV + T E A +A+ +++GK I K LYV AQ+K ER A L+ R
Sbjct: 113 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR--RFERLRLKEK 170
Query: 232 SVPPRMPMY 240
S PP +P+Y
Sbjct: 171 SRPPGVPIY 179
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 153 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
S FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + EE
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 213 R----RARLQAQFSQMRPVAMGPSV 233
R R R +A F+ + +G +
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDI 84
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 209 RKEERRARLQAQFSQ 223
RKEER+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 15/131 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
I+ K +FVG +K ER+ +K KF N+++KNLD++ DE L+K F
Sbjct: 6 ISGKIIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 64
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 65 SPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 123
Query: 110 REQELKGQFEQ 120
R+ L Q+ Q
Sbjct: 124 RKAHLTNQYMQ 134
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 209 RKEERRARLQAQFSQ 223
RKEER+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 15/131 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIF 49
I+ K +FVG +K ER+ +K KF N+++KNLD++ DE L+K F
Sbjct: 6 ISGKIIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 64
Query: 50 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + YV AQ+K E
Sbjct: 65 SPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 123
Query: 110 REQELKGQFEQ 120
R+ L Q+ Q
Sbjct: 124 RKAHLTNQYMQ 134
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 156/282 (55%), Gaps = 63/282 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI+ K+V VG F+R+ R + + N+F+KN+ D+ L+ F E+G I SA V
Sbjct: 165 MLIDGKEVQVGVFMRRDTRPDQEV---YTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASV 221
Query: 61 -----------------MRDGDGK----------------------------------SK 69
+D D K S
Sbjct: 222 KMGKRKKFAKKGKKAEAKKDEDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESL 281
Query: 70 CFGFVNFENADDAAKAVEALNGKKFD--------DREWYVGKAQKKSEREQELKGQFEQA 121
FGFVNF + AA AVEA+N K + ++ +VG+AQKKSER+ EL+ ++E
Sbjct: 282 GFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAE 341
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
E + KFQG+NLY+KNL D++ D+ L++ F GTITS K+MRD + S+G GFV FS
Sbjct: 342 KMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFS 401
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 222
TPE+A+RA+ EM+GK++ KP+YV++AQR+E RRA+L+AQ +
Sbjct: 402 TPEDATRAVNEMSGKIVAGKPIYVSLAQRREVRRAQLEAQHA 443
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 61/80 (76%), Gaps = 6/80 (7%)
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
ALA+A+PE Q+ ++GE LYPL+ Q + D A K+TGMLLEMD +E+LHLLESPEAL AK+
Sbjct: 617 ALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQ 676
Query: 441 EAMEVLRSVAQQQANNPADQ 460
EA++VL A+N AD+
Sbjct: 677 EALQVL------DAHNAADK 690
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + L +IF G + S V RD +S + +VN+ A DA +A+++
Sbjct: 14 SLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADAERALDS 73
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL + ID+++L
Sbjct: 74 MNFTDIKGKPCRIMWSQRDPSVRRSGVG----------------NIFVKNLHEGIDNKQL 117
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I SCKV+ D +G+SKG G+V + T E A+ A+ +++G +I K + V V
Sbjct: 118 YDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVF 177
Query: 208 QRKEER 213
R++ R
Sbjct: 178 MRRDTR 183
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 18/148 (12%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNF 76
+R+ ++ N+FVKNL E ++ L F +G I S V+ D + G SK +G+V++
Sbjct: 90 QRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGYVHY 149
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFEQAMKETVDKFQGLNLY 135
E + AA A++ L+G D +E VG ++ R +QE+ NL+
Sbjct: 150 ETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTRPDQEVY----------------TNLF 193
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKV 163
IKN+ DD++L+ F+EFG I S V
Sbjct: 194 IKNMPYEWDDKRLEAEFAEFGEIVSASV 221
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
+ F +LY+ +L +++ L E+F+ G + S +V RD + S G +V + +A
Sbjct: 8 NSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADA 67
Query: 186 SRALAEMNGKMIVSKPLYVAVAQR 209
RAL MN I KP + +QR
Sbjct: 68 ERALDSMNFTDIKGKPCRIMWSQR 91
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 135/209 (64%), Gaps = 4/209 (1%)
Query: 3 INDKQVFVGHFLRKQERET---VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
+N++QV+VG F +ER K F NVFVKN + D+ LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVK 229
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +FE
Sbjct: 230 VIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFE 289
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G + F
Sbjct: 290 RLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVICF 348
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQ 208
S+ EEA++A+ EMNG+++ SKPL V + Q
Sbjct: 349 SSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 130/216 (60%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G+I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T DK N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDKATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+KLKELFSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG+I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDKATFTNV 201
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LK+IF YG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK + + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+ + SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 127/216 (58%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+ + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS +G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL ID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKCIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + DE LK+IF YG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK + + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+ + SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 127/216 (58%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+ + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS +G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL ID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKCIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 131/208 (62%), Gaps = 14/208 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+ S KVMRDPSG SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSK---TLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 254 SGKIIFVGRAQKKVERQAELKRKFEQLK 281
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 566 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 623
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 624 SLRSKVDEAVAVLQA 638
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++TK F NVFVKN + DE LK+IF YG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK + + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ E+A++A+ EMNG+ + SKPL+V + Q
Sbjct: 348 FSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TKDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS +G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ + R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRR--FERLRLKEKSRPPGVPIY 305
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ERRARLQAQ 220
ER A ++ +
Sbjct: 185 ERAAEVRTK 193
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 145/247 (58%), Gaps = 27/247 (10%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59
ML+N VFVG F +E+E + + K + V G +S
Sbjct: 4 MLLNGLNVFVGRFRSPKEQEAELGARAKESKV---------------------GPASSVK 42
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
V+ D GKSK FGFV+FE +D A++ +NGK+F + Y+ A KK E + ELK +FE
Sbjct: 43 VITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVEEQTELKCKFE 101
Query: 120 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179
Q ++ + ++QG N+ +KNL +SIDDE+L++ FS FG I S VM + G SK GFV F
Sbjct: 102 QMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMME-GGCSKRFGFVCF 160
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP-PRMP 238
S+PEE ++A+ MNGK++ SKPL+VA+AQ KE+R A Q+ M+ +A +VP P +
Sbjct: 161 SSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQY--MQKMASVRAVPHPVIN 218
Query: 239 MYPPGPS 245
Y P PS
Sbjct: 219 PYQPAPS 225
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN + D+ LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + KG G V
Sbjct: 289 ERLRLKEKTRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVEQ-GKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 120/191 (62%), Gaps = 10/191 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G+I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGDDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D+KLKELFSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRA 215
AQ+K ER A
Sbjct: 272 GRAQKKIERLA 282
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG+I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 134/206 (65%), Gaps = 7/206 (3%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+N++QV+ +R ++R T F NVFVKN + DE LK IF EYG S V+R
Sbjct: 170 LNNRQVYRAAEVRTRDRAT------FTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIR 223
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +FE+
Sbjct: 224 DASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 283
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+ + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V +S+
Sbjct: 284 LKEKSRPPGVPVYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCYSSF 342
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQ 208
EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 343 EEATKAVDEMNGRIMGSKPLHVTLGQ 368
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 21/216 (9%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ Y R E++ T D+ N+++KN GD +D
Sbjct: 161 AIWHMNGVRLNNRQVY---------RAAEVR---------TRDRATFTNVFVKNFGDDMD 202
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLK++FSE+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 203 DEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 262
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ + R S PP +P+Y
Sbjct: 263 GRAQKKIERLAELRRR--FERLRLKEKSRPPGVPVY 296
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +Y R
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY-----RAA 179
Query: 212 ERRARLQAQFSQM 224
E R R +A F+ +
Sbjct: 180 EVRTRDRATFTNV 192
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 138/236 (58%), Gaps = 22/236 (9%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 67
++V +F+R+ R A+ F NV++K L + + ++K F ++G ITSA +D +G+
Sbjct: 89 LYVANFIRRNAR-LAALVANFTNVYIKQLLPTVNKDTIEKFFSKFGGITSAATCKDKNGR 147
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQFEQAM 122
+ F F NFE DDA KA+EA + + + + YV +AQ +SER L+ ++ Q
Sbjct: 148 A--FAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYVQRAQPRSERLIALRQKYMQCQ 205
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
G NLY++N ++ L LF E+GTI SC+VM D +G S+G GFV+F
Sbjct: 206 S------LGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSRGFGFVSFENA 259
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ--------MRPVAMG 230
++A+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q MRP+++G
Sbjct: 260 DQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQRMQMMLRHMRPMSLG 315
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 24/207 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNL +L IF +G I S VM D G+S+ +GFV+F++ A A+E++
Sbjct: 16 NIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKDDTAAKNAIESM 75
Query: 90 NGKKFD----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
NG K YV +++ R L F N+YIK L +++
Sbjct: 76 NGDKEHADAAKAALYVANFIRRNARLAALVANFT-------------NVYIKQLLPTVNK 122
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP-- 201
+ +++ FS+FG ITS +D +G + F F ++A +A+ + ++I V+ P
Sbjct: 123 DTIEKFFSKFGGITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGE 180
Query: 202 -LYVAVAQRKEERRARLQAQFSQMRPV 227
LYV AQ + ER L+ ++ Q + +
Sbjct: 181 KLYVQRAQPRSERLIALRQKYMQCQSL 207
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+++KNL +D +L +F FG I SCKVM D G S+G GFV F A A+ M
Sbjct: 16 NIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKDDTAAKNAIESM 75
Query: 193 NGKM----IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
NG LYVA R+ R A L A F+ + + P+V
Sbjct: 76 NGDKEHADAAKAALYVANFIRRNARLAALVANFTNVYIKQLLPTV 120
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 372 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
P+P + S L+N + E+QR LG+ LY V ++ D A K+TGM LEMD + LL +
Sbjct: 402 PLPPIS-SEDLSNMTLEEQRAALGDRLYIKVYEIAPDYAPKITGMFLEMDMKDAFVLLSN 460
Query: 432 PEALKAKVAEAMEVLR 447
+ L+ KV EA+ VL+
Sbjct: 461 QKLLEDKVTEALCVLK 476
>gi|62321231|dbj|BAD94406.1| putative poly(A) binding protein [Arabidopsis thaliana]
Length = 154
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 317 LPIMPHQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPI 375
+P M QM PRG YRYP G RNM D P G M+PV DM QPM
Sbjct: 1 MPYMQPQMMPRGRGYRYPSGGRNMPDGPM---PGGMVPVAYDMNV------MPYSQPMSA 51
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
L+T+LANA+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL
Sbjct: 52 GQLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEAL 111
Query: 436 KAKVAEAMEVLRSVAQ--------QQANNPADQLASLSLNENL 470
AKV+EA++VLR+V Q ++ +P+D LASLS+N++L
Sbjct: 112 NAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 154
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 136/210 (64%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN DE LK+IF YG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK + + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ E+A++A+ EMNG+ + SKPL+V + Q
Sbjct: 348 FSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN G+ +D
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNFGNDMD 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKE+FS +G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ + R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRRR--FERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQM 224
ER R R +A F+ +
Sbjct: 185 ERAAEVRTRDRATFTNV 201
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 127/209 (60%), Gaps = 12/209 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD++ ++ + F +G I S V D + SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFE 147
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYI 136
+ A KA+ +NG ++++ YVGK + ERE+ L DK + N+YI
Sbjct: 148 TEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREKMLG-----------DKARCFTNVYI 196
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KN GD +DD+KL +F ++G ITS KVM D SG ++G GFV+F P+ A RA+ E+NGK
Sbjct: 197 KNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKD 256
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +PLYV AQ+K ER++ L+ F Q++
Sbjct: 257 MGGRPLYVGRAQKKAERQSELKRHFEQLK 285
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 72 MNFDAIKNKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKTIDNKAM 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SC+V D SKG GFV F T E A++A++++NG ++ +K +YV
Sbjct: 116 YDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFI 175
Query: 209 RKEERRARL 217
++ER L
Sbjct: 176 PRKEREKML 184
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A+P Q+ +LGE L+PL+ ++ D A K+TGMLLE+D +E+LH+LE E
Sbjct: 599 PLTA--SMLAEATPHDQKQMLGERLFPLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHE 656
Query: 434 ALKAKVAEAMEVLRS 448
+LKAKV EA+ VL++
Sbjct: 657 SLKAKVEEAVAVLQA 671
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 14/225 (6%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
+ K ++V +F+R+ R A+ F NV++K + + + E ++K F ++G ITSA +D
Sbjct: 183 DKKALYVANFIRRNAR-LAALVANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKD 241
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQF 118
G+ F F NFE DDA KAVEA++ D + YV +AQ +SER L+ ++
Sbjct: 242 KSGR--VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKY 299
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
Q G NLY++N L ELF E+G + SC+VM SG S+G GFV+
Sbjct: 300 MQHQS------LGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVS 353
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS +EA+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 354 FSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N + A KA+E+
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIES 85
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 204
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 24/203 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL++ + L IF ++G+I S VM+D +GKS+ +GFV+F++ A A+ +
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 90 NG----KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
NG D + YV +++ R L F N+YIK + ++
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFT-------------NVYIKQVLPTVSK 220
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP-- 201
E +++ F++FG ITS +D SG + F F ++A +A+ M+ I ++ P
Sbjct: 221 EVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 202 -LYVAVAQRKEERRARLQAQFSQ 223
LYV AQ + ER L+ ++ Q
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQ 301
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL + L+ +V E
Sbjct: 494 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEDRVTE 553
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 554 ALCVLKA 560
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 14/225 (6%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
+ K ++V +F+R+ R A+ F NV++K + + + ++K F ++G ITSA +D
Sbjct: 183 DKKALYVANFIRRNAR-LAALVANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKD 241
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQF 118
G+ F F NFE DDA KAVEA++ D + YV +AQ +SER L+ ++
Sbjct: 242 KSGR--VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKY 299
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
Q + G NLY++N L ELF E+G + SC+VM SG+S+G GFV+
Sbjct: 300 MQ------HQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVS 353
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS +EA+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 354 FSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N D A KA+E+
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 204
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 26/216 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL++ + L IF ++G+I S VM+D +GKS+ +GFV+F++ A A+ +
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 90 NG----KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
NG D + YV +++ R L F N+YIK + +++
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFT-------------NVYIKQVLPTVNK 220
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP-- 201
+ +++ F++FG ITS +D SG + F F ++A +A+ M+ I ++ P
Sbjct: 221 DVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 202 -LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
LYV AQ + ER L+ ++ Q + A+G ++ R
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQHQ--ALGNNLYVR 312
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL + L+ +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 550 ALCVLKA 556
>gi|147863122|emb|CAN82975.1| hypothetical protein VITISV_026120 [Vitis vinifera]
Length = 213
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/107 (71%), Positives = 85/107 (79%)
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
+VMRDP+GIS+GSGFVAFST +EASR LA+MNGKM+ SKPLYVA+AQ KE+RR RLQAQF
Sbjct: 103 QVMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQF 162
Query: 222 SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFG 268
SQMRP AM PSV PRM MYPPG GLGQQ YGQ P + P G
Sbjct: 163 SQMRPTAMAPSVGPRMSMYPPGTPGLGQQLFYGQGPQLLSLPNQNLG 209
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 60 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
VMRD +G S+ GFV F A +A++ + +NGK + YV AQ K +R L+ QF
Sbjct: 104 VMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFS 163
Query: 120 Q 120
Q
Sbjct: 164 Q 164
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 14/225 (6%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
+ K ++V +F+R+ R A+ F NV++K + + E ++K F ++G ITSA +D
Sbjct: 183 DKKALYVANFIRRNAR-LAALVANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKD 241
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQF 118
G+ F F NFE DDA KAVEA++ D + YV +AQ +SER L+ ++
Sbjct: 242 KSGR--VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKY 299
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
Q G NLY++N L ELF E+G + SC+VM SG S+G GFV+
Sbjct: 300 MQHQS------LGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVS 353
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS +EA+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 354 FSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N D A KA+E+
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 204
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 24/203 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL++ + L IF ++G+I S VM+D +GKS+ +GFV+F++ A A+ +
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 90 NG----KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
NG D + YV +++ R L F N+YIK + +++
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFT-------------NVYIKQVLPTVNK 220
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP-- 201
E +++ F++FG ITS +D SG + F F ++A +A+ M+ I ++ P
Sbjct: 221 EVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 202 -LYVAVAQRKEERRARLQAQFSQ 223
LYV AQ + ER L+ ++ Q
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQ 301
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L + SP++QR LG+ L+ V ++ + A K+TGM LEM E LL + L+ +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 550 ALCVLKA 556
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 129/225 (57%), Gaps = 14/225 (6%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
+ K ++V +F+R+ R A+ F NV++K + + E ++ F ++G ITSA +D
Sbjct: 183 DKKALYVANFIRRNAR-LAALVANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKD 241
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQF 118
G+ F F NFE DDA KAVEA++ D + YV +AQ +SER L+ ++
Sbjct: 242 KSGR--VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKY 299
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
Q + G NLY++N L ELF E+G + SC+VM SG S+G GFV+
Sbjct: 300 MQ------HQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVS 353
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS +EA+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 354 FSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQ 398
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 21/209 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N A +A+E+
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIES 85
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFRRVGDKCVRLMWQQRDPSLRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 204
++F++FG+I SCKVM D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYV 189
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL++ + L IF ++G+I S VM D +GKS+ +GFV+F++ A A+ +
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKM 173
Query: 90 NG----KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
NG D + YV +++ R L F N+YIK + +++
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFT-------------NVYIKQVLPTVNK 220
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP-- 201
E ++ F++FG ITS +D SG + F F ++A +A+ M+ I ++ P
Sbjct: 221 EVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 202 -LYVAVAQRKEERRARLQAQFSQ 223
LYV AQ + ER L+ ++ Q
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQ 301
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L + SP++QR LG+ L+ V ++ + A K+TGM LEM+ E LL + L+ +V E
Sbjct: 484 LESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQKRLEERVTE 543
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 544 ALCVLKA 550
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 14/225 (6%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
+ K ++V +F+R+ R A+ F NV++K + + + ++K F ++G ITSA +D
Sbjct: 183 DKKALYVANFIRRNAR-LAALVANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKD 241
Query: 64 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQF 118
G+ F F NFE DDA KAVEA++ D + YV +AQ +SER L+ ++
Sbjct: 242 KSGR--VFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKY 299
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
Q + G NLY++N L ELF E+G + SC+VM SG+S+G GFV+
Sbjct: 300 MQ------HQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVS 353
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
FS +EA+ AL EMNG+M+ KPL V +AQR+++R ++ QF Q
Sbjct: 354 FSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTIVRLQFQQ 398
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + + L ++F +GTI + V RD +S +G+VNF+N D A KA+E+
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K+ D+ + Q+ G N+++KNL +D + L
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNG----------------NVFVKNLEKDVDSKSL 129
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYV 204
++F++FG+I SCKVM+D G S+G GFV F A A+ +MNG + K LYV
Sbjct: 130 HDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYV 189
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A R+ R A L A F+ + + P+V
Sbjct: 190 ANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 26/216 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL++ + L IF ++G+I S VM+D +GKS+ +GFV+F++ A A+ +
Sbjct: 114 NVFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 90 NG----KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
NG D + YV +++ R L F N+YIK + +++
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFT-------------NVYIKQVLPTVNK 220
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP-- 201
+ +++ F++FG ITS +D SG + F F ++A +A+ M+ I ++ P
Sbjct: 221 DVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGE 278
Query: 202 -LYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236
LYV AQ + ER L+ ++ Q + A+G ++ R
Sbjct: 279 KLYVQRAQPRSERLIALRQKYMQHQ--ALGNNLYVR 312
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L + SP++QR LG+ L+ V ++ D A K+TGM LEM E LL + L+ +V E
Sbjct: 490 LESMSPQEQRAALGDRLFLKVYEIPPDVAPKITGMFLEMKPKEAYELLNDQKRLEERVTE 549
Query: 442 AMEVLRS 448
A+ VL++
Sbjct: 550 ALCVLKA 556
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG + R+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 THEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 64/88 (72%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 435
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 542 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 601
Query: 436 KAKVAEAMEVLRSVAQQQANNPADQLAS 463
++KV EA+ VL++ ++A A A+
Sbjct: 602 RSKVDEAVAVLQAHQAKEATQKAVNSAT 629
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS---GFVA 178
M + + +LY+ +L + + L E FS G I S +V RD I++GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDL--ITRGSSNYAYVN 58
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F P++A AL MN +I KPL + +QR
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQR 89
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 67
++V +F+R+ R A+ F NV++K L + + ++K F ++G ITSA + +D +G+
Sbjct: 183 LYVANFIRRNAR-LAALVANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNGR 241
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQFEQAM 122
+ F F NFE DDA KA+EA + ++ + + YV +AQ +SER L+ ++ Q
Sbjct: 242 A--FAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQ 299
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
G NLY++N ++ L ELF E+G I SC+VM D +GIS+G GFV+F
Sbjct: 300 S------LGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENA 353
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
++A+ AL EMNG+M+ KPL V +AQR+++R
Sbjct: 354 DQANAALREMNGRMLNGKPLVVNIAQRRDQR 384
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 24/220 (10%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 76
Q+R+ + N+FVKNL E +L IF ++G I S VM D GKS+ +GFV+F
Sbjct: 97 QQRDPALRYSGSGNIFVKNLKEEVDSRELSLIFKKFGEILSCKVMDDESGKSRGYGFVHF 156
Query: 77 ENADDAAKAVEALNGKK----FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
++ D A A+E +NG K D YV +++ R L F
Sbjct: 157 KDDDAAKAAIEKMNGDKEHADADKAALYVANFIRRNARLAALVANFT------------- 203
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+YIK L ++D + +++ FS+FG ITS + +D +G + F F ++A +A+
Sbjct: 204 NVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNG--RAFAFCNFEKHDDAVKAIEAS 261
Query: 193 NGKMI--VSKP---LYVAVAQRKEERRARLQAQFSQMRPV 227
+ + + V++P LYV AQ + ER L+ ++ Q + +
Sbjct: 262 HDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQSL 301
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 114/210 (54%), Gaps = 23/210 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +LD + + L IF YGTI + V RD +S +G+VN+++ + A+KA+E
Sbjct: 22 SLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAMEE 81
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEK 147
LN K+ VG E+ ++ ++Q ++ ++ G N+++KNL + +D +
Sbjct: 82 LNFKR-------VG--------EKCIRIMWQQ--RDPALRYSGSGNIFVKNLKEEVDSRE 124
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK----PLY 203
L +F +FG I SCKVM D SG S+G GFV F + A A+ +MNG + LY
Sbjct: 125 LSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALY 184
Query: 204 VAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
VA R+ R A L A F+ + + P+V
Sbjct: 185 VANFIRRNARLAALVANFTNVYIKQLLPTV 214
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
PI+A L S ++QR LG+ LY V +L D A K+TGM LEM+ E L LL +P+
Sbjct: 489 PISA--EDLQQMSVDEQRAALGDRLYIKVHELAPDHAPKITGMFLEMNPKEALALLSNPK 546
Query: 434 ALKAKVAEAMEVLR 447
+ KV EA+ VL+
Sbjct: 547 LMHEKVTEALCVLK 560
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
Q +LY+ +L +I++ +L ++F +GTI + +V RD + S G G+V + AS+
Sbjct: 18 LQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASK 77
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
A+ E+N K + K + + QR
Sbjct: 78 AMEELNFKRVGEKCIRIMWQQR 99
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 99/145 (68%)
Query: 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
AQKKSER ELK + EQ E + K+QG+NLY+KNL +S+DDE LK+ F FG ITS KV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
M D +G SKG GFV F PEEA+ A+ EMN KM+ SKPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Query: 224 MRPVAMGPSVPPRMPMYPPGPSGLG 248
S P MY P +G G
Sbjct: 121 RLASMRMHSNVPGGGMYNPAQTGPG 145
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 15 RKQERETVAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 72
+K E+ V K+ N++VKNLDES DE LKK F +G ITSA VM D +G+SK FG
Sbjct: 13 KKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFG 72
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
FV FE ++A AV +N K + YV AQ+K +R +L Q+ Q +
Sbjct: 73 FVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 118/170 (69%), Gaps = 7/170 (4%)
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
+FE+ + A KAVEALNG + YV QK+ ER+ ELK +F++ E ++++QG+NL
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KNL D+IDD +L++ F++FGTITS KVM G SKG GFV F +PEEA++A+ EMN
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP 244
K+I ++PLYVA+AQ+K++R+A+L +Q+ M + MP + GP
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQY-------MQRTSSRDMPEHRIGP 165
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 94/142 (66%), Gaps = 10/142 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNL ++ D L+K F ++GTITSA VM DG+SK FGFV F + ++AAKA+ +
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ-------GLNLYIKNLGDS 142
N K + R YV AQKK +R+ +L Q+ M+ T + G+NL+IKNL S
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQY---MQRTSSRDMPEHRIGPGVNLFIKNLDKS 177
Query: 143 IDDEKLKELFSEFGTITSCKVM 164
IDDEKL+E FS+FGTITS KV+
Sbjct: 178 IDDEKLREEFSQFGTITSAKVV 199
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 9 FVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
FVG+F ++ERE + KF NV++KN E TDE LK++F +G S VM+D G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
+S+ FGFVNF + DA KAV+ +NG + + + YVG+AQK+ ER+ ELK +FE ++ +
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 163
++QG+NLY+KNL D IDDE+L++ F+ +GTITS KV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 77/126 (61%), Gaps = 10/126 (7%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
+VG + + ERE+EL +A+K T N+YIKN G+ DEKLKE+FS FG
Sbjct: 1 FVGNFKSRKEREEELG---SKALKFT-------NVYIKNFGEDYTDEKLKEVFSAFGRTL 50
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S +VM+D G S+G GFV F+ +A +A+ EMNG + K +YV AQ++ ER+ L+
Sbjct: 51 SVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKR 110
Query: 220 QFSQMR 225
+F ++
Sbjct: 111 KFELIK 116
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 132/221 (59%), Gaps = 14/221 (6%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 67
++V +F+R+ R + F NV++K + + E ++K F ++G ITS+ +D +G+
Sbjct: 192 LYVANFIRRNARLATLV-ANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNGR 250
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQFEQAM 122
F F NFE +DA KA+EA + + D + YV +AQ +SER L+ ++ Q
Sbjct: 251 --VFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC- 307
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+T+ G NLY++N +E L ELF E+G I SC+VM D +G S+G GFV+F
Sbjct: 308 -QTL----GNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENA 362
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
++A+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 363 DQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQ 403
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 25/222 (11%)
Query: 21 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
TV + TK +++V +LD T+ L ++F +GTI + V RD +S +G+VNF
Sbjct: 18 TVPVTTKALQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNF 77
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ D AAKA+EALN K+ D+ + Q+ G N+++
Sbjct: 78 NSHDSAAKAMEALNFKRVGDKCMRIMWQQRDPTLRYSGNG----------------NIFV 121
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL + +D +L +F +FG I SCKVM D G S+G GFV F A A+ MNG+
Sbjct: 122 KNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEK 181
Query: 197 IVSKP-----LYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
+ LYVA R+ R A L A F+ + + P+V
Sbjct: 182 DHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTV 223
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 25/208 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNL +L IF ++G I S VM D +GKS+ +GFV+F+N + A +A+E +
Sbjct: 118 NIFVKNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENM 177
Query: 90 NGKK-FDDRE----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
NG+K D E YV +++ R L F N+YIK + ++D
Sbjct: 178 NGEKDHADEEKKMGLYVANFIRRNARLATLVANFT-------------NVYIKQVLPTVD 224
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP- 201
E +++ FS+FG ITS +D +G + F F E+A +A+ + + + V P
Sbjct: 225 KEVIEKFFSKFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPG 282
Query: 202 --LYVAVAQRKEERRARLQAQFSQMRPV 227
LYV AQ + ER L+ ++ Q + +
Sbjct: 283 EKLYVQRAQPRSERLIALRQKYMQCQTL 310
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
PITA L + S ++QR LG+ LY V ++ D A K+TGM LEMD E LL +
Sbjct: 493 PITA--EDLRSMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLTNQR 550
Query: 434 ALKAKVAEAMEVLRS 448
L+ KV EA+ VL++
Sbjct: 551 LLQEKVIEALCVLKA 565
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 131/221 (59%), Gaps = 14/221 (6%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 67
++V +F+R+ R + F NV++K + + E ++K F +G ITS+ +D +G+
Sbjct: 185 LYVANFIRRNARLATLV-ANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNGR 243
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDD-----REWYVGKAQKKSEREQELKGQFEQAM 122
F F NFE +DA KA+EA + + D + YV +AQ +SER L+ ++ Q
Sbjct: 244 --VFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC- 300
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
+T+ G NLY++N +E L ELF E+G I SC+VM D +G S+G GFV+F
Sbjct: 301 -QTL----GNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNA 355
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
++A+ AL EMNG+M+ KPL V +AQR+++R L+ QF Q
Sbjct: 356 DQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQ 396
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 25/222 (11%)
Query: 21 TVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
TV + TK +++V +LD T+ L ++F +GTI + V RD +S +G++NF
Sbjct: 11 TVPVTTKALQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINF 70
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
N D AAKA+EALN K+ D+ + Q+ G N+++
Sbjct: 71 NNHDSAAKAMEALNFKRVGDKCMRIMWQQRDPALRYSGNG----------------NVFV 114
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL + +D +L +F +FG I SCKVM D G S+G GFV F A A+ MNG
Sbjct: 115 KNLKNEVDSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDK 174
Query: 197 IVSKP-----LYVAVAQRKEERRARLQAQFSQMRPVAMGPSV 233
+ LYVA R+ R A L A F+ + + P+V
Sbjct: 175 DHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTV 216
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 25/208 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL +L IF ++G I S VM D +GKS+ +GFV+F+N + A +A+E +
Sbjct: 111 NVFVKNLKNEVDSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENM 170
Query: 90 NG-KKFDDRE----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
NG K D E YV +++ R L F N+YIK + ++D
Sbjct: 171 NGDKDHADEEKKMGLYVANFIRRNARLATLVANFT-------------NVYIKQVLPTVD 217
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP- 201
E +++ FS FG ITS +D +G + F F E+A +A+ + + + V P
Sbjct: 218 KEVIEKFFSRFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPG 275
Query: 202 --LYVAVAQRKEERRARLQAQFSQMRPV 227
LYV AQ + ER L+ ++ Q + +
Sbjct: 276 EKLYVQRAQPRSERLIALRQKYMQCQTL 303
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 22 VAIKTKF-------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 74
+A++ K+ NN++V+N D T+E+L ++F EYG I S VM D +G S+ FGFV
Sbjct: 291 IALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFV 350
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
+F NAD A A+ +NG+ + + V AQ++ +R L+ QF+Q ++ + + +
Sbjct: 351 SFGNADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQAMMRRMHSM 408
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
PITA L S ++QR LG+ LY V ++ D A K+TGM LEMD E LL +
Sbjct: 492 PITA--EDLRTMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLNNQR 549
Query: 434 ALKAKVAEAMEVLRS 448
L+ KV EA+ VL++
Sbjct: 550 LLQEKVIEALCVLKA 564
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 41/233 (17%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
F NV++K++ S T+E +++ FG +G ITS + D G+ F FVNF + A AVE
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVE 61
Query: 88 ALNGKKFDDRE---------------------------------------WYVGKAQKKS 108
++G+ + E YV +AQ K+
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
ER LK QF +F G+NLY+KNLG+++DD +LK +F FGTITS KVM D
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
G+S+G GFV FST EEA++A+ +M+ K+I KPLYV + +++E+R RLQ ++
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 141/269 (52%), Gaps = 51/269 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I +K V+V F + ER K F NV++K++ S +E +K+ FG +G ITS V
Sbjct: 199 MQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAV 257
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE---------------------- 98
D G+ F FVN+ + A AVE ++GK + E
Sbjct: 258 QTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEEEKAADRAQREREREERKAAREA 315
Query: 99 -------------------------WYVGKAQKKSEREQELKGQFEQA-MKETVDKFQGL 132
YV +AQ K+ER LK QF + + +F G+
Sbjct: 316 AKAEGREDGDDVESDDDDEEPETSHLYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGV 375
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
NLY+KNLG+ +DD +LK++F FGT+TS KVM D G+S+G GFV FST EEA++A+ +M
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQF 221
+ K+I KPLYV + +++E+R RLQ ++
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NV+VKNLD + ++ L F +G I S V DGKS+ FGFV+FE+ + A A+ L
Sbjct: 137 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YV +K +ER F N+YIK++ S ++EK+K
Sbjct: 197 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 243
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
E F FG ITS V DP G + FV ++ E+A A+ EM+GK +
Sbjct: 244 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 289
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 85
+F +++ +L T+ L ++F G + S V RD KS + ++NF N DA +A
Sbjct: 46 QFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
++ LN R + + + + G N+Y+KNL +ID+
Sbjct: 106 LDTLNYSPIKGRPCRLMWSHRDPALRRSGAG----------------NVYVKNLDRNIDN 149
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV P G S+G GFV F + E A A+A++NG I K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 206 VAQRKEER 213
++ ER
Sbjct: 210 PFKKTAER 217
>gi|388492458|gb|AFK34295.1| unknown [Medicago truncatula]
Length = 107
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/99 (77%), Positives = 89/99 (89%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+ AL+TALANA PEQQRT+LGE LYPLVE++E AAKVTGMLLEMDQ EVLHL+ESPE
Sbjct: 9 PMQALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPE 68
Query: 434 ALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS 472
ALK KVAEA++VLR+VAQQQ+N+P DQLASLSLN+NL S
Sbjct: 69 ALKTKVAEAVDVLRNVAQQQSNSPTDQLASLSLNDNLES 107
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 141/269 (52%), Gaps = 51/269 (18%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I +K V+V F + ER K F NV++K++ S +E +K+ FG +G ITS V
Sbjct: 199 MQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAV 257
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE---------------------- 98
D G+ F FVN+ + A AVE ++GK + E
Sbjct: 258 QTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEEEKAADRAQREREREERKAAREA 315
Query: 99 -------------------------WYVGKAQKKSEREQELKGQFEQA-MKETVDKFQGL 132
YV +AQ K+ER LK QF + + +F G+
Sbjct: 316 AKAEGREEGDDVESDDDDEEPETSHLYVARAQPKAERAAVLKEQFSASRGAQGGGRFGGV 375
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
NLY+KNLG+ +DD +LK++F FGT+TS KVM D G+S+G GFV FST EEA++A+ +M
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQF 221
+ K+I KPLYV + +++E+R RLQ ++
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NV+VKNLD + ++ L F +G I S V DGKS+ FGFV+FE+ + A A+ L
Sbjct: 137 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YV +K +ER F N+YIK++ S ++EK+K
Sbjct: 197 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 243
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
E F FG ITS V DP G + FV ++ E+A A+ EM+GK +
Sbjct: 244 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 289
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 85
+F +++ +L T+ L ++F G + S V RD KS + ++NF N DA +A
Sbjct: 46 QFASLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERA 105
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
++ LN R + + + + G N+Y+KNL +ID+
Sbjct: 106 LDTLNYSPIKGRPCRLMWSHRDPALRRSGAG----------------NVYVKNLDRNIDN 149
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV P G S+G GFV F + E A A+A++NG I K +YVA
Sbjct: 150 KALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA 209
Query: 206 VAQRKEER 213
++ ER
Sbjct: 210 PFKKTAER 217
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 106/154 (68%), Gaps = 3/154 (1%)
Query: 96 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 155
++++ V +AQKKSER+ ELK ++EQ E + ++QG+NLY+KNL D+I+DE L+ F +
Sbjct: 13 EQKFTVCRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESY 72
Query: 156 GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 215
G ITS KVM D G SKG GFV F +EA++A+ EMN K+I +KPLYVA+AQRKE+R+A
Sbjct: 73 GNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKA 132
Query: 216 RLQAQFSQMRPVAMGPSVPPRM--PMYPPGPSGL 247
+L +Q+ Q R AM P + MY P G
Sbjct: 133 QLASQYMQ-RLAAMRMQNPAGLMGTMYAPASGGF 165
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNL ++ DE L+ F YG ITSA VM D G+SK FGFV FE AD+A KAV +
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
N K +++ YV AQ+K +R+ +L Q+ Q +
Sbjct: 110 NNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
>gi|62321453|dbj|BAD94856.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 126
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 105/148 (70%), Gaps = 22/148 (14%)
Query: 320 MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALS 379
M QM PRG +RYP GR G+G + P DMG +P + I AL+
Sbjct: 1 MQQQMHPRGRMFRYPQGRG--------GSGDV--PPYDMGNNMP---------LTIGALA 41
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKV
Sbjct: 42 SNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKV 101
Query: 440 AEAMEVLRSVAQQQANNPADQLASLSLN 467
AEAM+VLRSVA A +QLASL+L+
Sbjct: 102 AEAMDVLRSVA---AGGATEQLASLNLS 126
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 122/197 (61%), Gaps = 11/197 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 27 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAER 85
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 86 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIKNFGEDMD 135
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LKE+F++FG S KVM D SG SKG GFV+F E+A +A+ EMNGK I + +YV
Sbjct: 136 DERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYV 195
Query: 205 AVAQRKEERRARLQAQF 221
K ER+ L+ +F
Sbjct: 196 GPCPXKVERQTELKRKF 212
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK+IF ++G S
Sbjct: 93 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSV 152
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+SK FGFV+FE +DA KAV+ +NGK+ + R+ YVG K ER+ ELK +F
Sbjct: 153 KVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 32 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 90
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
NG ++ + ++V + ++ER A L A+ + V +
Sbjct: 91 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI 127
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD+S ++L F +G I S ++ D +G+SK +GFV+FE + A +A+E +
Sbjct: 102 NIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N DR YVGK K+ER+ + + K + NLY+KN D+EKLK
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQAR------------KVKFNNLYVKNFPPETDNEKLK 209
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E+FSEFG I S VM+D G SKG GFV + P+ A A+ M+GK I + LY A AQR
Sbjct: 210 EMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQR 269
Query: 210 KEERRARLQAQFSQMR 225
KEER+ L+ + + R
Sbjct: 270 KEERQEELKQKIEKQR 285
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 84/124 (67%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I D+ V+VG F+ K ER++ A K KFNN++VKN T +E LK++F E+G I SA V
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACV 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+D +GKSK FGFV + + D A AV ++GK+ + R Y +AQ+K ER++ELK + E+
Sbjct: 224 MKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEK 283
Query: 121 AMKE 124
E
Sbjct: 284 QRAE 287
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
++++V +L +D L+ F E G + SA V RD +S +G+VNFE+ A +A+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + R + +Q+ + KG N++IKNL SI+ ++
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKG----------------NIFIKNLDKSIEQKE 116
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCK++ D +G SKG GFV F E A RA+ ++N +I + +YV
Sbjct: 117 LYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKF 176
Query: 208 QRKEERRA 215
K ER++
Sbjct: 177 IPKTERKS 184
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 130 QGL---NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
QGL +LY+ +L + D L+ FSE G + S +V RD + S G G+V F P+ A
Sbjct: 8 QGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHA 67
Query: 186 SRALAEMNGKMIVSKPLYVAVAQR 209
+AL +N + ++ +P+ + +QR
Sbjct: 68 EQALEVLNYEPLMGRPIRIMWSQR 91
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 15/209 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+ L+ F ++G I SA V DG G SK +GF+ F+
Sbjct: 120 QRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQGNSKGYGFIQFD 179
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A +A+E +NG + +D+ YVG Q+++ER T KF N+++K
Sbjct: 180 TEAAAKEAIEKVNGMELNDKVVYVGPFQRRAER------------GTTETKFN--NVFVK 225
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM- 196
NLGD + DE+L+++F FG +TS + +D G SKG GFV + TPE+AS+A+ E++GK
Sbjct: 226 NLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDGKHG 285
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K V AQ+K ER A L+A+F R
Sbjct: 286 EEDKKWVVCRAQKKAEREAELKAKFEAER 314
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+++V +L+ S T+ L ++F G + S V RD +S + +VNF A DAA+A++
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + + + +Q+ T+ K N++IKNL ID
Sbjct: 103 VLNFQVVNGKPIRILYSQRDP----------------TIRKSGVGNIFIKNLDKDIDTVA 146
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L++ F++FG I S KV D G SKG GF+ F T A A+ ++NG + K +YV
Sbjct: 147 LRDTFAQFGNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPF 206
Query: 208 QRKEER 213
QR+ ER
Sbjct: 207 QRRAER 212
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
PI + + L A+P+QQR +LGE+LYPLV+ ++ AAKVTGMLLEMDQ EVLHL+ES +
Sbjct: 542 PIALIVSQLGTATPDQQRMILGEALYPLVDAVDSANAAKVTGMLLEMDQAEVLHLIESAD 601
Query: 434 ALKAKVAE 441
ALKAKV E
Sbjct: 602 ALKAKVQE 609
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 120/188 (63%), Gaps = 11/188 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK + FV+FE D A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE EL + ++ N+YIKN GD +DDE+LKE+FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGDDMDDERLKEMFS 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
++G S KVM D +G SKG GFV+F E+A++A+ EMNGK + K ++V AQ+K ER
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 214 RARLQAQF 221
+A L+ +F
Sbjct: 170 QAELKRKF 177
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE LK++F +YG S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAVE +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 118 KVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 118/188 (62%), Gaps = 11/188 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
+FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 214 RARLQAQF 221
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 84/120 (70%), Gaps = 2/120 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD++ ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 615
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 616 KVEEAVAVLQ 625
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDKAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + ERE+EL E+A T N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELG---EKAKLFT-------NVYVKNFTEDFDDEKLK 200
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 201 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 260
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 261 KKAERQQELKRKFEELK 277
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 615
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 616 KVEEAVAVLQ 625
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDRAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI 166
Query: 209 RKEERRARL 217
++ER L
Sbjct: 167 PRKEREKEL 175
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 14/209 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KTK ++VKN + ++D FG+ G T ++ + G+ FG + F DA +
Sbjct: 40 KTKTCPIYVKNFVKEIDEDDF---FGKCGASTK--IINNDCGQQTEFGLLPFNKQKDAIR 94
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
AV+ + G + Y+ +A+ K +R+ E + E K ++ +NLY+KNL ID
Sbjct: 95 AVDKMKG-----MDIYLAQAKIKEKRQTEFSKKPEPLHK---PRYNSVNLYVKNLSYEID 146
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D +LK+ F+ FGTITS KVMR+ G SKG GFV FSTP EA +AL+EMNGK++ SKPLYV
Sbjct: 147 DYRLKKEFAPFGTITSAKVMRE-GGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYV 205
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV 233
A AQRK+ER+ L Q++Q A P+
Sbjct: 206 AWAQRKQERQVSLAQQYTQRMEKAWIPNT 234
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 49/66 (74%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L +ASP +Q+ +LG L+PLV+ +++ A K+TG+LLE D +E++++LESPE L+ +
Sbjct: 364 LVSASPHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEIIYMLESPELLRTMANK 423
Query: 442 AMEVLR 447
A+ +L+
Sbjct: 424 AVTLLQ 429
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 116 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
G ++ + +T K + +Y+KN ID++ + F + G S K++ + G G
Sbjct: 28 GMSDEHVNDTESKTKTCPIYVKNFVKEIDED---DFFGKCG--ASTKIINNDCGQQTEFG 82
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
+ F+ ++A RA+ +M G I Y+A A+ KE+R Q +FS+
Sbjct: 83 LLPFNKQKDAIRAVDKMKGMDI-----YLAQAKIKEKR----QTEFSK 121
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 110 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169
R+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GG 59
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 113
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 82
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 83 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 115
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAIKT-KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ER E + K KFNNV+VKN E DE L+ +F YG I SA
Sbjct: 166 MLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISA 225
Query: 59 VVMRDGDGKSKCFGF-VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
VM D V+FE+ + A KAVEALNG + YVG+AQKK ER+ ELK +
Sbjct: 226 KVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEK 285
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 156
FE+ E ++++QG+NLY+KNL D+IDDE+L++ F++FG
Sbjct: 286 FERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFG 324
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 12/202 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S ++ D G S+ +GFV+FE + A
Sbjct: 100 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARI 158
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + ++ +VG+ + ER + + + + KF N+Y+KN + I+
Sbjct: 159 AIEKVNGMLLNGKKVFVGRFMSRRERLE--------VLGDKMRKFN--NVYVKNFSEEIN 208
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGF-VAFSTPEEASRALAEMNGKMIVSKPLY 203
DE L+++F +G I S KVM D V+F PE A +A+ +NG K LY
Sbjct: 209 DETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILY 268
Query: 204 VAVAQRKEERRARLQAQFSQMR 225
V AQ+K ER+A L+ +F ++R
Sbjct: 269 VGRAQKKIERQAELKEKFERIR 290
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 408 DAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
D A K+TGMLLE+D +E+LH+LES E+L+AKV EA+ VL++
Sbjct: 408 DLAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQA 448
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L + + L E FS G + +V RD + S G +V F P +A RAL
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN I +P+ + +QR
Sbjct: 77 MNFDTIKGRPIRIMWSQR 94
>gi|298712686|emb|CBJ48711.1| polyadenylate-binding protein, putative [Ectocarpus siliculosus]
Length = 80
Score = 144 bits (362), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/80 (85%), Positives = 73/80 (91%)
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
MRD DGKSKCFGFVNFENADDAAKAVEALNGKK DD+EWYVGKAQKKSERE ELK +FEQ
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 121 AMKETVDKFQGLNLYIKNLG 140
+MKET DK+QG NLY+KN G
Sbjct: 61 SMKETADKYQGANLYVKNFG 80
Score = 51.6 bits (122), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 164 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
MRD G SK GFV F ++A++A+ +NGK + K YV AQ+K ER L+ +F Q
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 11/185 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 214 RARLQ 218
+ L+
Sbjct: 170 QTELK 174
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 2/117 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG +G S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 115
VM D GKSK FGFV+FE +DA KAV +NGK+ + ++ YVG+AQKK ER+ ELK
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 117/201 (58%), Gaps = 10/201 (4%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT NVF+KNLD S ++ L F +G I S + D G SK +GFV++E + A
Sbjct: 123 KTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADN 182
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ ++G +D++ YVG+ + ER+ ++ ++ KF N+Y+KNL +SI+
Sbjct: 183 AIKHVDGMLLNDKKVYVGRHIPRKERQAKI--------EQIRAKF--TNVYVKNLDESIN 232
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+ KE+FS+FG ITS V D G SKG GF+ F E+A +A+ +N K LYV
Sbjct: 233 DEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYV 292
Query: 205 AVAQRKEERRARLQAQFSQMR 225
A AQ+K ER L+ Q+ Q +
Sbjct: 293 ARAQKKTEREEELRKQYEQAK 313
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N D +A+E+
Sbjct: 40 SLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALES 99
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + G N++IKNL SID++ L
Sbjct: 100 LNYTLIKGKPCRIMWSQRDPSLRKTGSG----------------NVFIKNLDTSIDNKAL 143
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG SKG GFV + T E A A+ ++G ++ K +YV
Sbjct: 144 HDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHI 203
Query: 209 RKEERRARLQ---AQFSQM 224
++ER+A+++ A+F+ +
Sbjct: 204 PRKERQAKIEQIRAKFTNV 222
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 388 EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
E Q+ +LGE LYPL+ + + A K+TGMLLEMD E+L+LLE +AL +K+ EA+EVL+
Sbjct: 545 ETQKQMLGERLYPLINAQQPEYAGKITGMLLEMDNGELLNLLEDSKALDSKINEAVEVLK 604
Query: 448 S 448
+
Sbjct: 605 A 605
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 11/188 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKDLFG 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
+FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 214 RARLQAQF 221
+ + +F
Sbjct: 170 QTEXKRKF 177
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 82/120 (68%), Gaps = 2/120 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ E K +F
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 8/168 (4%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG Q ++ R LK +F+ E+ +K QG+NLYIKNL D+IDD+ LKELF +GTIT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVMRD SKG GFV F+ EEA+RA+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 536
Query: 220 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF-----LYGQAPPAIIP 262
+F +M P+ + PM P P QF YG+ P I P
Sbjct: 537 RF-RMHPIRHHMNNALNSPMQYPNPQSPQLQFNQNTLNYGR--PVITP 581
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 101/187 (54%), Gaps = 23/187 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG KKSER A +T KF NLY+KN DS+ + LK
Sbjct: 165 NGIQLGSKNVYVGHFIKKSER----------ATNDT--KF--TNLYVKNFPDSVTEAHLK 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYVA 205
+LFS FG ITS V D ++ F+ ++ E A A+ +NGK I P Y A
Sbjct: 211 QLFSPFGEITSMIVKTDNK--NRKFCFINYADSESAKNAMENLNGKKITDDGQIDPTYDA 268
Query: 206 VAQRKEE 212
+KEE
Sbjct: 269 ---KKEE 272
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YT-----------NIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 206 VAQRKEER 213
+K ER
Sbjct: 178 HFIKKSER 185
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
K V+VGHF++K ER T TKF N++VKN +S T+ LK++F +G ITS +V D
Sbjct: 172 KNVYVGHFIKKSERATN--DTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKT--D 227
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDD 96
K++ F F+N+ +++ A A+E LNGKK D
Sbjct: 228 NKNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 8 VFVGHFLRKQERETVAIKTKFNNV-------------FVKNLDESTTDEDLKKIFGEYGT 54
++VG + R + +K KF+N+ ++KNLD++ D+ LK++F YGT
Sbjct: 416 LYVGPHQSRARRHAI-LKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGT 474
Query: 55 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 114
ITSA VMRD +SK FGFV F ++A +AV ++ K + + YVG A+K+ +R L
Sbjct: 475 ITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRL 534
Query: 115 KGQF 118
+ +F
Sbjct: 535 QQRF 538
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 823 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 880
>gi|302142289|emb|CBI19492.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 82/89 (92%)
Query: 372 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
PMPI+ L++ALANA+P+QQRT+L ESLYPLV+QLE + AAK+TGMLLEM QTE LHLLES
Sbjct: 53 PMPISTLASALANATPDQQRTMLSESLYPLVDQLEHEMAAKLTGMLLEMGQTEFLHLLES 112
Query: 432 PEALKAKVAEAMEVLRSVAQQQANNPADQ 460
PEALK+KVAEAM+VLR+VAQQQAN+P +Q
Sbjct: 113 PEALKSKVAEAMDVLRNVAQQQANSPTEQ 141
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 15/209 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+ ++ L F ++G I SA V D G+SK +GFV F+
Sbjct: 109 QRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQGQSKGYGFVQFD 168
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E +NG +D++ YVG QK++ER T + N+Y+K
Sbjct: 169 TEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNER---------GGGPTTFN-----NVYVK 214
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KM 196
NL +S+ +EKL+E+F +FG +TS VM+D G SKG GFV + E A +++ E++G
Sbjct: 215 NLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELDGYDK 274
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMR 225
I K V AQ+K ER A L+A+F R
Sbjct: 275 IEDKAWVVCRAQKKSEREAELKAKFDAER 303
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P++ L+ L A+P+QQR LLGE+LYPLV+ +E ++AK+TGMLLEMD +EVLHL+ESPE
Sbjct: 525 PVSLLAAQLPTATPDQQRMLLGEALYPLVDAVEPASSAKITGMLLEMDHSEVLHLIESPE 584
Query: 434 ALKAKV 439
AL+AKV
Sbjct: 585 ALRAKV 590
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 80/90 (88%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLINDK+VFVG F+RKQ+RE V+ KF+NV+VKNL ++ TD++LK++FG+YGTITSAVV
Sbjct: 186 MLINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVV 245
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALN 90
MRD DGKS+CFGFVNFENAD AA+AV+ LN
Sbjct: 246 MRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 107/182 (58%), Gaps = 12/182 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
R+ + K+ N+F+KNLD+S ++ L F +G I S + D G+S+ +GFV FE
Sbjct: 112 NRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFE 171
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ LNG +D++ +VG +K +RE + + KF N+Y+K
Sbjct: 172 KDESAQSAIDKLNGMLINDKKVFVGPFVRKQDREN---------VSSNI-KFS--NVYVK 219
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL D++ D++LKE+F ++GTITS VMRD G S+ GFV F + A++A+ E+N ++
Sbjct: 220 NLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNDGVV 279
Query: 198 VS 199
S
Sbjct: 280 SS 281
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEAL 89
++V +L ES D L +F + G + S V RD + KS + +VN+ N DAA+A+E L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N + + + + + + G N++IKNL SID++ L
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTG----------------NIFIKNLDKSIDNKALY 140
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F FG I SCK+ DPSG S+G GFV F E A A+ ++NG +I K ++V R
Sbjct: 141 DTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR 200
Query: 210 KEER 213
K++R
Sbjct: 201 KQDR 204
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187
F +LY+ +L +S+ D +L ++FS+ G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERR 214
AL +N I KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 119/210 (56%), Gaps = 12/210 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A + N+F+KNLD ++ + F +G I S V D +G SK +GFV+FE
Sbjct: 134 QRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 193
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A A+E +NG D++ YVGK Q +++R +EL E +K T N+++K
Sbjct: 194 TEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELG---ESGLKYT-------NVFVK 243
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D EKL +FS+FG ITS VM D G KG GFVAF+ + A +A+ ++N ++
Sbjct: 244 NFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 303
Query: 198 --VSKPLYVAVAQRKEERRARLQAQFSQMR 225
L V AQ+K ER A L+ ++ ++
Sbjct: 304 EGTDCKLSVCRAQKKSERSAELKRKYEALK 333
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 433
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ E
Sbjct: 603 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAE 662
Query: 434 ALKAKVAEAMEVL 446
++KV EA VL
Sbjct: 663 LFRSKVEEAFGVL 675
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
+LYI +L + + L E FS G + S +V RD S +S G +V F P +A RAL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 192 MNGKMIVSKPLYVAVAQRK-EERRA 215
MN ++I +P+ + +QR RRA
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRA 142
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 11/188 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK +GFV FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKE+F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKEVFG 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
++G S KVM D SG SKG GFV+F E+A +A+ MNGK + K +YV AQ+K ER
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 214 RARLQAQF 221
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG+YG S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+AQKK ER+ ELK +F
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG Q ++ R LK +F+ E+ +K QG+NLYIKNL D+IDD+ LKELF +GTIT
Sbjct: 417 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 476
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVMRD SKG GFV F+ EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 477 SAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 536
Query: 220 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 251
+F +M P+ + PM P P QF
Sbjct: 537 RF-RMHPIRHHMNNALNSPMQYPNPQSPQLQF 567
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG KKSER A +T KF NLY+KN DS+ + LK
Sbjct: 165 NGIQLGSKNVYVGHFIKKSER----------ATNDT--KF--TNLYVKNFPDSVTETHLK 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
ELFS +G ITS V D ++ F+ ++ E A A+ +NGK I
Sbjct: 211 ELFSPYGEITSMIVKTDNK--NRKFCFINYADSESAKNAMENLNGKKIT 257
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 206 VAQRKEER 213
+K ER
Sbjct: 178 HFIKKSER 185
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
K V+VGHF++K ER T TKF N++VKN +S T+ LK++F YG ITS +V D
Sbjct: 172 KNVYVGHFIKKSERATN--DTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKT--D 227
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDD 96
K++ F F+N+ +++ A A+E LNGKK D
Sbjct: 228 NKNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD++ D+ LK++F YGTITSA VMRD +SK FGFV F ++A KAV +
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 824 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 881
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 9/224 (4%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
I DK V V + +++R A +T+ F NVF KN+ +DED+ K F +G I S V+
Sbjct: 183 ILDKVVKVEAYKPRRQRMLEAEETQKNFTNVFFKNVAADISDEDIMKEFENFGEIESKVL 242
Query: 61 M-RDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQ 117
D G+ +GFV +++ DA KAV LN K D + YV +AQ+KSER L+ +
Sbjct: 243 KSHDQFGR---YGFVAYKDTADAQKAVSELNDKPLGADGTKLYVARAQRKSERMGRLRRE 299
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FE+ E K++ NLYIKN + + +++L+++F +GTI S +V++D G S+ GFV
Sbjct: 300 FERRRTEMRAKYKDANLYIKNFSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFV 359
Query: 178 AFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQ 220
FS+ EEA+RA+ EMNG+M KPLYV+ + KEER +Q Q
Sbjct: 360 LFSSEEEATRAIQEMNGRMTADGKPLYVSRFRNKEERAQEVQRQ 403
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 14/198 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
ER+ ++ N+F+KNL ++ L F +GT+ S V+ D +G S+ FV +E
Sbjct: 107 ERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYE 166
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+A+ A + + +N KK D+ V K + R Q + +ET F N++ K
Sbjct: 167 DAEVAKQVIAQVNDKKILDK---VVKVEAYKPRRQRM-----LEAEETQKNF--TNVFFK 216
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ I DE + + F FG I S KV++ + GFVA+ +A +A++E+N K +
Sbjct: 217 NVAADISDEDIMKEFENFGEIES-KVLKSHDQFGR-YGFVAYKDTADAQKAVSELNDKPL 274
Query: 198 VS--KPLYVAVAQRKEER 213
+ LYVA AQRK ER
Sbjct: 275 GADGTKLYVARAQRKSER 292
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 28/200 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVE 87
+++V +L + + +L F +G T+ S V RD ++ +G+VNF +DAAK E
Sbjct: 30 SLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKVYE 89
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM---KETVDKFQGL-NLYIKNLGDSI 143
A N +ELKGQ + M ++ + G+ N++IKNL +
Sbjct: 90 AANF--------------------EELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEV 129
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
D++ L + F FGT+ SC+V+ D G S+G FV + E A + +A++N K I+ K
Sbjct: 130 DNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDK--V 187
Query: 204 VAVAQRKEERRARLQAQFSQ 223
V V K R+ L+A+ +Q
Sbjct: 188 VKVEAYKPRRQRMLEAEETQ 207
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 393 LLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+LG L+ LV+ + A K+TGMLL+ VL LE+P ALKA + +A +VL
Sbjct: 490 VLGNPLFSLVQAQQPKHAPKITGMLLDQPDEAVLEYLENPAALKAALDQAYKVL 543
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG Q ++ R LK +F+ E+ +K QG+NLYIKNL D+IDD+ LKELF +GTIT
Sbjct: 408 YVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTIT 467
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVMRD SKG GFV F+ EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 468 SAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 527
Query: 220 QFSQMRPVAMGPSVPPRMPMYPPGP 244
+F +M P+ + PM P P
Sbjct: 528 RF-RMHPIRHHMNNALNSPMQYPNP 551
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG K+SER A +T KF NLY+KN DS+ + LK
Sbjct: 165 NGIQLGSKNVYVGHFIKRSER----------ATNDT--KF--TNLYVKNFPDSVTEAHLK 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+LFS +G ITS V D ++ F+ ++ E A A+ +NGK I
Sbjct: 211 QLFSPYGEITSMIVKTDNK--NRKFCFINYADSESAKNAMENLNGKKIT 257
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YT-----------NIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 206 VAQRKEER 213
++ ER
Sbjct: 178 HFIKRSER 185
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
K V+VGHF+++ ER T TKF N++VKN +S T+ LK++F YG ITS +V D
Sbjct: 172 KNVYVGHFIKRSERATN--DTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKT--D 227
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDD 96
K++ F F+N+ +++ A A+E LNGKK D
Sbjct: 228 NKNRKFCFINYADSESAKNAMENLNGKKITD 258
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD++ D+ LK++F YGTITSA VMRD +SK FGFV F ++A KAV +
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 501 HLKIINGKPLYVGLAEKREQRLSRLQQRF 529
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 814 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 871
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE L + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
FG S KVM D SG SKG GFV+F E+A +A+ EMNGK K +YV AQ+K ER
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 214 RARLQ 218
+ L+
Sbjct: 170 QTELK 174
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG +G S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 115
VM D GKSK FGFV+FE +DA KAV +NGK+ + ++ YV +AQKK ER+ ELK
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELK 174
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SJD++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYI 92
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 13/197 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ + F +G I S V D G SK +GFV+FE + A +++ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YVGK + E+E + E F N+Y+KN + DDEKLK
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEQE----------LGEKAKLF--TNVYVKNFTEDFDDEKLK 198
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQ 208
E F +G ITS KVM G SKG GFVAF T E A A+ +NGK M K LYVA AQ
Sbjct: 199 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 258
Query: 209 RKEERRARLQAQFSQMR 225
+K ER+ L+ +F +++
Sbjct: 259 KKAERQQELKRKFEELK 275
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 56/70 (80%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
+++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKA
Sbjct: 554 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKA 613
Query: 438 KVAEAMEVLR 447
KV EA+ VL+
Sbjct: 614 KVEEAVAVLQ 623
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L F G + S V RD +S + +VNF+ DA +A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ + +Q+ + G N++IKNL +ID++ +
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVG----------------NVFIKNLDRAIDNKAI 106
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+ FS FG I SCKV D G SKG GFV F T E A+ ++ ++NG ++ K +YV
Sbjct: 107 YDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ +L +++ L + FS G + S +V RD + S G +V F P +A RAL
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 192 MNGKMIVSKPLYVAVAQR 209
MN ++ +KP+ + +QR
Sbjct: 63 MNFDLVRNKPIRIMWSQR 80
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 119/210 (56%), Gaps = 12/210 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A + N+F+KNLD ++ + F +G I S V D +G SK +GFV+FE
Sbjct: 17 QRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFE 76
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A A+E +NG D++ YVGK Q +++R +EL E +K T N+++K
Sbjct: 77 TEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELG---ESGLKYT-------NVFVK 126
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +D EKL +FS+FG ITS VM D G KG GFVAF+ + A +A+ ++N ++
Sbjct: 127 NFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 186
Query: 198 --VSKPLYVAVAQRKEERRARLQAQFSQMR 225
L V AQ+K ER A L+ ++ ++
Sbjct: 187 EGTDCKLSVCRAQKKSERSAELKRKYEALK 216
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 376 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 433
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ E
Sbjct: 486 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAE 545
Query: 434 ALKAKVAEAMEVL 446
++KV EA VL
Sbjct: 546 LFRSKVEEAFGVL 558
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 111/192 (57%), Gaps = 32/192 (16%)
Query: 112 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS 171
QELK Q+E A E + K+QG+NL++KNL DS+DDEKL+E FS FGTI S KVMR G S
Sbjct: 1 QELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKS 60
Query: 172 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--- 225
K GFV FSTPEEA+RA+ E N +++ KPLYVA+AQRKE RRA+L Q +QMR
Sbjct: 61 KNFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARNQMRYQQ 120
Query: 226 ----------------PVAMGPSVPPR-MPMYPPGPSGLG---QQF-----LYGQAPPAI 260
P+ G +PPR +P P P G QQF +YG
Sbjct: 121 ATAAAAAAGIPGQFLQPMFYG-VMPPRGVPFNGPNPQMSGVPPQQFRNGPGVYGMPAQGS 179
Query: 261 IPPQAGFGYQQQ 272
PP F Q+Q
Sbjct: 180 FPPNDQFFQQKQ 191
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 54/88 (61%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S DE L++ F +GTI SA VMR DGKSK FGFV F ++A +A+
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQ 117
N + + YV AQ+K R +L Q
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRAQLAQQ 109
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 388 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 189 QKQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEVMPLLENNELFEQHFKEAFAA 248
Query: 446 LRS 448
S
Sbjct: 249 YES 251
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG Q ++ R LK +F+ E +K QG+NLYIKNL D IDD L+ELF FGTIT
Sbjct: 418 YVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTIT 477
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVMRD SKG GFV F++ EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 478 SAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 537
Query: 220 QFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF 251
+F +M P+ + P PM P QF
Sbjct: 538 RF-RMHPIRHHMNNPLNTPMQYASPQSPQLQF 568
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG KKSER A +T KF NLY+KN DS+ + L+
Sbjct: 165 NGVQLGSKNVYVGPFIKKSER----------ATNDT--KF--TNLYVKNFPDSVTETHLR 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I
Sbjct: 211 QLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKIT 257
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL SID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG 177
Query: 206 VAQRKEER 213
+K ER
Sbjct: 178 PFIKKSER 185
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 6 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
K V+VG F++K ER T TKF N++VKN +S T+ L+++F YG ITS +V D
Sbjct: 172 KNVYVGPFIKKSERATN--DTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKM--D 227
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDD 96
K++ F F+N+ +A+ A A++ LNGKK D
Sbjct: 228 NKNRKFCFINYADAESAKNAMDNLNGKKITD 258
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 59/89 (66%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD+ D L+++F +GTITSA VMRD +SK FGFV F + ++A KAV +
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E LK K+ EA+ VL+
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD S ++ L F +G I S + D G SK +GFV++E
Sbjct: 121 QRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYE 180
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A++ +NG +D++ YVG+ K ER+ +++ QF KF N+Y+K
Sbjct: 181 TEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIE-QFRA-------KF--TNVYVK 230
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL +S+ DE+ E+ ++FG ITS V D G SKG GFV F E+A +A+ +N
Sbjct: 231 NLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEH 290
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K LYVA AQ+K ER L+ Q+ Q +
Sbjct: 291 KGKILYVARAQKKTEREEELRKQYEQAK 318
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N D +A+E+
Sbjct: 45 SLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALES 104
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + G N++IKNL SID++ L
Sbjct: 105 LNYTLIKGKPCRIMWSQRDPSLRKTGSG----------------NVFIKNLDPSIDNKAL 148
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D SG SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 149 HDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHV 208
Query: 209 RKEERRARLQ---AQFSQMRPVAMGPSV 233
K+ER+A+++ A+F+ + + SV
Sbjct: 209 PKKERQAKIEQFRAKFTNVYVKNLDESV 236
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
Q+ +LGE LYPL+ + + A K+TGMLLEMD E+L+LLE +AL K+ E MEVL++
Sbjct: 550 QKQMLGERLYPLINAQQPEFAGKITGMLLEMDNGELLNLLEDSKALDGKINEPMEVLKA 608
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 130/230 (56%), Gaps = 15/230 (6%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ D +V V F+R+ +RE +A K+ F N+++KN+ S T+ D+K I E+G + S +
Sbjct: 163 LGDSEVVVAPFVRRVDREAMAAKS-FRNIYIKNITASATEADVKAIVEEFGKVDSLFLSE 221
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQ 117
+K F V FE A +A+ ALN G + V +A KSER++E K
Sbjct: 222 HARFPTK-FALVAFEEHQAAVQAIAALNESEESGLTEKAVKLVVCRALSKSERDREKKK- 279
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
++ + G NLYIK+L D I D++L+E+F FG ITSC +M++P+G KG FV
Sbjct: 280 -----AASLYQNHGRNLYIKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFV 334
Query: 178 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 225
F + AS AL +NG + +KPLYV+ A++K+ R LQ + + MR
Sbjct: 335 CFEDKQHASAALRSLNGHPLEHSAKPLYVSHAEQKDMRIRLLQQRRAAMR 384
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ NNVFVK LD + ++L+ F + G + S V D G SK +GFV FE
Sbjct: 89 RDPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQFET 148
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
AD A+E +NG K D E V ++ +RE F N+YIKN
Sbjct: 149 ADGTKAALE-MNGSKLGDSEVVVAPFVRRVDREAMAAKSFR-------------NIYIKN 194
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG---- 194
+ S + +K + EFG + S + + + VAF + A +A+A +N
Sbjct: 195 ITASATEADVKAIVEEFGKVDSL-FLSEHARFPTKFALVAFEEHQAAVQAIAALNESEES 253
Query: 195 -------KMIVSKPLYVAVAQRKEERRARL 217
K++V + L + R++++ A L
Sbjct: 254 GLTEKAVKLVVCRALSKSERDREKKKAASL 283
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 21/200 (10%)
Query: 29 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 85
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 144
++ALN Y G A + +++ F ++++ + + G+ N+++K L +I+
Sbjct: 68 IDALN---------YTGIAPGR-----QIRVMF--SIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++L+ FS+ G + SCKV D +G SKG GFV F T + ++A EMNG + + V
Sbjct: 112 AKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQFETA-DGTKAALEMNGSKLGDSEVVV 170
Query: 205 AVAQRKEERRARLQAQFSQM 224
A R+ +R A F +
Sbjct: 171 APFVRRVDREAMAAKSFRNI 190
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 442 AMEVLRSVAQQQANN 456
A VL QQ N
Sbjct: 534 ANAVL----QQHTGN 544
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 34 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 94 FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153
+DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +DDE+LKELF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMDDERLKELFG 109
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 214 RARLQ 218
+ L+
Sbjct: 170 QTELK 174
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG S
Sbjct: 58 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSV 117
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 115
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 174
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 197 IVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ + ++V + ++ER A L A+ + V +
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 92
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 106/178 (59%), Gaps = 11/178 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNL+++ ++ L F +G I S V+ D +G SK GFV+FE + A +A+E +
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKM 158
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +DR+ +VG+ + + ERE EL KE N+YIKN GD +DDE L
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELG----TGTKEFT------NVYIKNFGDRMDDETLN 208
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LF FG I S KVM D G SKG GFV+F E+A +A+ EMNGK + K +YV A
Sbjct: 209 GLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE + TK F NV++KN + DE L +FG +G I S
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + + YVG+A
Sbjct: 221 KVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 26/193 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + VNFE DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N++IKNL +ID
Sbjct: 72 MN---FD-----------------VIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARL 217
+ ++ER A L
Sbjct: 171 GRFKSQKEREAEL 183
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 114/186 (61%), Gaps = 10/186 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ + F +G I S V D + SK +GFV+FE + A
Sbjct: 28 KSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANN 87
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++ +VG+ + ERE+ L ++A + T N+YIKN GD +D
Sbjct: 88 AISKVNGMLLNGKKVFVGRFIPRKERERLLG---DKARRFT-------NVYIKNFGDELD 137
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKL +F ++G +TS KVM D +G ++G GFV+F PE A +A+ E+NGK + KPLYV
Sbjct: 138 DEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYV 197
Query: 205 AVAQRK 210
AQ+K
Sbjct: 198 GRAQKK 203
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVA--IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N K+VFVG F+ ++ERE + +F NV++KN + DE L IF +YG +TSA
Sbjct: 95 MLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSA 154
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108
VM D +GK++ FGFV+FE+ + A KAVE LNGK + YVG+AQKK+
Sbjct: 155 KVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQKKA 204
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ + + FS FG I SC+V D SKG GFV F T E A+ A++++
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 193 NGKMIVSKPLYVA-VAQRKEERR 214
NG ++ K ++V RKE R
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERER 115
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 136 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYE 195
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 196 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 242
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + ++ ++LF ++G +TS + RD G S+G GFV F+T E AS+A+ E+N
Sbjct: 243 YVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELNN 302
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 303 KDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%)
Query: 375 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 434
+++L LA+A P QQ+ +LGE ++P ++ + D A K+TGMLLEM+ E+++L+E A
Sbjct: 634 LSSLQQQLASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNLIEDESA 693
Query: 435 LKAKVAEAMEVLRSVAQQQAN 455
LKAKV EA+ V + Q +
Sbjct: 694 LKAKVDEALAVYDEYVKTQTS 714
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G + S +V RD + S G +V ++ + +AL E
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEE 119
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 120 LNYTIIKGRPCRIMWSQR 137
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 11/171 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 69 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 127
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 128 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 177
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK
Sbjct: 178 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 228
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 135 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 194
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93
VM D GKSK FGFV+FE +DA KAV+ +NGK+
Sbjct: 195 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 229
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 26/182 (14%)
Query: 53 GTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 111
G I S V RD +S + +VNF+ DA +A++ +N FD
Sbjct: 9 GPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN---FD---------------- 49
Query: 112 QELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167
+KG+ + M D + G+ N++IKNL SID++ L + FS FG I SCKV+ D
Sbjct: 50 -VIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 108
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
+G SKG GFV F T E A RA+ +MNG ++ + ++V + ++ER A L A+ + V
Sbjct: 109 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 167
Query: 228 AM 229
+
Sbjct: 168 YI 169
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG Q ++ R LK +F+ E+ +K G+NLYIKNL DS+DD+ LKELF +GTIT
Sbjct: 368 YVGPHQSRARRHALLKAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTIT 427
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVM+D SKG GFV F T EEA++A+ EM+ K+I KPLYV +A+++E+R +RLQ
Sbjct: 428 SAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQ 487
Query: 220 QFSQMRPVAMGPSVPPRMPM-YP 241
+F +M P+ + PM YP
Sbjct: 488 RF-RMHPIRHHMNNSLNSPMQYP 509
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD++ ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG KKSER A +T KF NLY+KN D++ + LK
Sbjct: 165 NGMQLGSKNVYVGHFIKKSER----------ATNDT--KF--TNLYVKNFPDTVTEAHLK 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
ELFS +G ITS V D ++ F+ +S + A A+ +NGK I
Sbjct: 211 ELFSPYGEITSMIVKSDNK--NRKFCFINYSDADSARNAMENLNGKKIT 257
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L E T+ L +IF G + S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL +ID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVG 177
Query: 206 VAQRKEERRARLQAQFSQM 224
+K E RA +F+ +
Sbjct: 178 HFIKKSE-RATNDTKFTNL 195
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M + K V+VGHF++K ER T TKF N++VKN ++ T+ LK++F YG ITS +V
Sbjct: 167 MQLGSKNVYVGHFIKKSERATN--DTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV 224
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 94
D K++ F F+N+ +AD A A+E LNGKK
Sbjct: 225 K--SDNKNRKFCFINYSDADSARNAMENLNGKKI 256
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD+S D+ LK++F YGTITSA VM+D +SK FGFV F ++A KAV +
Sbjct: 401 NLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEM 460
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 461 HLKIINGKPLYVGLAEKREQRLSRLQQRF 489
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 117/191 (61%), Gaps = 11/191 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K++ +N+F+KNL +S ++ L F +G I S V+ D +G SK +GFV+FE + +
Sbjct: 50 KSEVSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVER 108
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E ++G +D + +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 109 AIEKMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFT----------NVYIKNFGEDMD 158
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE LK+LF +FG KVM D SG SKG GFV+F E+A +A+ EMNGK + K +Y+
Sbjct: 159 DEHLKDLFGKFGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYI 218
Query: 205 AVAQRKEERRA 215
AQ+K E++
Sbjct: 219 GRAQKKVEQQT 229
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND +VFVG F ++ERE A +F NV++KN E DE LK +FG++G
Sbjct: 116 MLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRV 175
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 111
VM D GKSK FGFV+FE +DA KAV +NGK+ + ++ Y+G+AQKK E++
Sbjct: 176 KVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNLG SID++ L + F FG I SCKV+ D +G SKG GFV F T E RA+ +M
Sbjct: 55 NIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKM 113
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+G ++ ++V + ++ER A L A+ + V +
Sbjct: 114 SGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYI 150
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 113/211 (53%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLDE+ ++ L F +G + S V D G+SK +GFV++E
Sbjct: 126 QRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYE 185
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++A+NG +D++ YVG K ER+ E++ QF N+
Sbjct: 186 TAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQF-------------TNI 232
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KNL + E+ +LF +FG +TS + D G SKG GFV F EEA A+ ++
Sbjct: 233 YVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHD 292
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ L+V+ AQ+K ER L+ + +
Sbjct: 293 TEYNGRKLFVSRAQKKAEREEELRKSYEHAK 323
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 50 SLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 109
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL ++ID++ L
Sbjct: 110 LNYSLIKGRACRIMWSQR------------DPALRKT---GQG-NIFIKNLDEAIDNKAL 153
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + SCKV D G SKG GFV + T E A A+ +NG ++ K +YV
Sbjct: 154 HDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 213
Query: 209 RKEERRARL---QAQFSQMRPVAMGPSV 233
K+ER+++L +AQF+ + + P V
Sbjct: 214 SKKERQSKLDEIRAQFTNIYVKNLDPEV 241
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
++ L N SP +Q+ ++GE +Y + D A K+TGMLLEMD E++ L+ S +AL K
Sbjct: 592 TSTLVNLSPMEQKQMIGEMIYMQIVNQHPDLAGKITGMLLEMDNAELISLVASHDALDGK 651
Query: 439 VAEAMEVLR 447
V+EA+ VL+
Sbjct: 652 VSEALNVLQ 660
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 97/136 (71%), Gaps = 8/136 (5%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YV +AQKK+ER+ LK Q E A+KE+ ++QG+NLY+KNL DSI++E L+ +F FGT++
Sbjct: 332 YVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVS 390
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S + D SG+S+G GFV+F +P+EA++A+ EM+ K++ KPLYV + +RKE+R RLQ
Sbjct: 391 SVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQ 450
Query: 220 QFSQMRPVAMGPSVPP 235
+ G +VPP
Sbjct: 451 RIR-------GGAVPP 459
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 15/180 (8%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + + NVFVKNLD+S ++ L F +G I S + D +GKS +GF++FE+
Sbjct: 90 RDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEH 149
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
AD A +A+ LNG DR YVGK QKK+ER E F N+Y+K+
Sbjct: 150 ADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTF-------------TNVYVKH 196
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+ S ++ L ++F +G I+S + D G + GFV F P+ A A+A ++ ++
Sbjct: 197 IPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVT 254
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +LD T+ L +IF ++S + RD +S + +VN+ + DA +A++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N R + + + G N+++KNL SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDG----------------NVFVKNLDKSIDNKTLF 117
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCK+ D G S G GF+ F + A A++ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 210 KEERRARLQAQFSQM 224
K ER + F+ +
Sbjct: 178 KAERFSEKDKTFTNV 192
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 11/121 (9%)
Query: 6 KQVFVGHFLRKQERETV------AIKTKFN-----NVFVKNLDESTTDEDLKKIFGEYGT 54
+++V +K ER+ V A+K N++VKNL +S +EDL+ +F +GT
Sbjct: 329 NRLYVSRAQKKNERQVVLKSQHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGT 388
Query: 55 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 114
++S + D G S+ FGFV+F + D+A KA+ ++ K + YVG ++K +R L
Sbjct: 389 VSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRL 448
Query: 115 K 115
+
Sbjct: 449 Q 449
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L LL S +K KV EAM VL
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 450 AQQ 452
QQ
Sbjct: 741 QQQ 743
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 97/136 (71%), Gaps = 8/136 (5%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YV +AQKK+ER+ LK Q E A+KE+ ++QG+NLY+KNL DSI++E L+ +F FGT++
Sbjct: 332 YVSRAQKKNERQVVLKSQHE-AVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVS 390
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S + D SG+S+G GFV+F +P+EA++A+ EM+ K++ KPLYV + +RKE+R RLQ
Sbjct: 391 SVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQQ 450
Query: 220 QFSQMRPVAMGPSVPP 235
+ G +VPP
Sbjct: 451 RIR-------GGAVPP 459
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 15/180 (8%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + + NVFVKNLD+S ++ L F +G I S + D +GKS +GF++FE+
Sbjct: 90 RDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEH 149
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
AD A +A+ LNG DR YVGK QKK+ER E F N+Y+K+
Sbjct: 150 ADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKTF-------------TNVYVKH 196
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+ S ++ L ++F +G I+S + D G + GFV F P+ A A+A ++ ++
Sbjct: 197 IPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVT 254
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +LD T+ L +IF ++S + RD +S + +VN+ + DA +A++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N R + + + G N+++KNL SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDPASRRNNDG----------------NVFVKNLDKSIDNKTLF 117
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCK+ D G S G GF+ F + A A++ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 210 KEERRARLQAQFSQM 224
K ER + F+ +
Sbjct: 178 KAERFSEKDKTFTNV 192
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 11/121 (9%)
Query: 6 KQVFVGHFLRKQERETV------AIKTKFN-----NVFVKNLDESTTDEDLKKIFGEYGT 54
+++V +K ER+ V A+K N++VKNL +S +EDL+ +F +GT
Sbjct: 329 NRLYVSRAQKKNERQVVLKSQHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGT 388
Query: 55 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 114
++S + D G S+ FGFV+F + D+A KA+ ++ K + YVG ++K +R L
Sbjct: 389 VSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRL 448
Query: 115 K 115
+
Sbjct: 449 Q 449
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ LLGE L+P++ Q + + A K+TGM+LEMD E+L LL S +K KV EAM VL
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 450 AQQ 452
QQ
Sbjct: 741 QQQ 743
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 15/230 (6%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ D +V V F+R+ +RE +A K+ F N+++KN+ + T+ D+K ++G + S +
Sbjct: 163 LGDSEVVVAPFVRRVDREVMAAKS-FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSE 221
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQ 117
+K F V FE + A +A+ ALN G + V +A KSER++E K
Sbjct: 222 HAPFPTK-FALVAFEEHEAAVQAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKK- 279
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
++ + G NLY+K+L D I D+KL+E+F FG ITSC +M++P+G KG FV
Sbjct: 280 -----AASLYQNHGRNLYVKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFV 334
Query: 178 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 225
F + AS AL +NG+ + KPLYV+ A++K+ R LQ + + MR
Sbjct: 335 CFEDRQHASAALRSLNGQPLEHSKKPLYVSHAEQKDMRIRLLQQRRAAMR 384
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ NNVFVK LD + ++L+ F + G + S V D G SK +GFV FE
Sbjct: 89 RDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFET 148
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
A + AKA +NG K D E V ++ +RE F N+YIKN
Sbjct: 149 A-EGAKAALDMNGSKLGDSEVVVAPFVRRVDREVMAAKSFR-------------NIYIKN 194
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN----- 193
+ + + +K +FG + S + + + VAF E A +A+A +N
Sbjct: 195 IAAAATEADVKAAAEKFGKVNSL-FLSEHAPFPTKFALVAFEEHEAAVQAIAALNESEES 253
Query: 194 ------GKMIVSKPLYVAVAQRKEERRARL 217
K++V + L + R++++ A L
Sbjct: 254 GLTEKAAKLVVCRALSKSERDREKKKAASL 283
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 21/189 (11%)
Query: 29 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 85
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 144
++ALN Y G A L+ + ++++ + + G+ N+++K L +I+
Sbjct: 68 IDALN---------YTGIAPG-------LQIRVMFSIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++L+ F++ G + SCKV D +G SKG GFV F T E A AL +MNG + + V
Sbjct: 112 AKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAAL-DMNGSKLGDSEVVV 170
Query: 205 AVAQRKEER 213
A R+ +R
Sbjct: 171 APFVRRVDR 179
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 442 AMEVLRSVAQQQANN 456
A VL QQ N
Sbjct: 534 ANAVL----QQHTGN 544
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ D +V V FLR+ +RE +A K+ F N+++KNL + + D+K +G + S +
Sbjct: 163 LGDCEVVVAPFLRRVDREVMAAKS-FRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSE 221
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQ 117
+K F V FE + A KA+ ALN G + V +A KSER++E K
Sbjct: 222 HAPFPTK-FALVAFEEHEAAVKAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKK- 279
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
++ + G NLY+K+L D I D++L+E+F+ FG ITSC +M++P+G KG FV
Sbjct: 280 -----AASLYQNHGRNLYVKHLPDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFV 334
Query: 178 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVA-MGP--- 231
F + AS AL +NG + K LYV+ A++K+ R LQ + + MR + M P
Sbjct: 335 CFEDRQHASAALRSLNGHSLDNSKKLLYVSQAEQKDMRIRLLQQRRAAMRHQSRMAPPMN 394
Query: 232 SVPPRMPMYP 241
+ P + P +P
Sbjct: 395 TFPQQWPRHP 404
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ NNVFVK LD + ++L+ F + G + S V D G SK +GFV FE
Sbjct: 89 RDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFET 148
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
AD A A+E ++G K D E V ++ +RE F N+YIKN
Sbjct: 149 ADGAKAALE-MDGSKLGDCEVVVAPFLRRVDREVMAAKSFR-------------NIYIKN 194
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN----- 193
L ++ + +K FG + S + + + VAF E A +A+A +N
Sbjct: 195 LKATVAEADVKTTVETFGKVNSL-FLSEHAPFPTKFALVAFEEHEAAVKAIAALNESEES 253
Query: 194 ------GKMIVSKPLYVAVAQRKEERRARL 217
K++V + L + R++++ A L
Sbjct: 254 GLTEKAAKLVVCRALSKSERDREKKKAASL 283
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 21/189 (11%)
Query: 29 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 85
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 67
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 144
++ALN Y G + +++ F ++++ + + G+ N+++K L +++
Sbjct: 68 IDALN---------YTGITPGR-----QIRVMF--SIRDPIQRKSGMNNVFVKKLDTAVN 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++L+ F++ G + SCKV D +G SKG GFV F T + A AL EM+G + + V
Sbjct: 112 AKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAAL-EMDGSKLGDCEVVV 170
Query: 205 AVAQRKEER 213
A R+ +R
Sbjct: 171 APFLRRVDR 179
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILGDQFALLSKIQE 533
Query: 442 AMEVLRSVAQQQANN 456
A VL QQ N
Sbjct: 534 ANVVL----QQHTGN 544
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 6/182 (3%)
Query: 75 NFENADDAAKAVEALNGKKFDDRE-----WYVGKAQKKSEREQELKGQFEQAMKETVDKF 129
N NA A E + KK + YVG Q ++ R LK +F+ E+ +K
Sbjct: 348 NTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRARRHAILKAKFDTLNTESRNKH 407
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189
G+NLYIKNL DS++D+ LKELF +GTITS KVM+D SKG GFV F T EEA++A+
Sbjct: 408 PGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAV 467
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQ 249
EM+ K+I KPLYV +A+++E+R +RLQ +F +M P+ + P+ P
Sbjct: 468 TEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHINNALNAPIQYPNSQTAQL 526
Query: 250 QF 251
QF
Sbjct: 527 QF 528
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD++ ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG KKSER A +T KF NLY+KN D++ + LK
Sbjct: 165 NGMQLGSKNVYVGHFIKKSER----------ATNDT--KF--TNLYVKNFPDTVTEAHLK 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+LFS +G ITS V D ++ F+ +S + A A+ +NGK I
Sbjct: 211 QLFSPYGEITSMIVKSDNK--NRKFCFINYSDADSARNAMENLNGKKIT 257
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L E T+ L +IF G + S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL +ID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVG 177
Query: 206 VAQRKEERRARLQAQFSQM 224
+K E RA +F+ +
Sbjct: 178 HFIKKSE-RATNDTKFTNL 195
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M + K V+VGHF++K ER T TKF N++VKN ++ T+ LK++F YG ITS +V
Sbjct: 167 MQLGSKNVYVGHFIKKSERATN--DTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV 224
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 94
D K++ F F+N+ +AD A A+E LNGKK
Sbjct: 225 --KSDNKNRKFCFINYSDADSARNAMENLNGKKI 256
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD+S D+ LK++F YGTITSA VM+D +SK FGFV F ++A KAV +
Sbjct: 411 NLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEM 470
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + + YVG A+K+ +R L+ +F
Sbjct: 471 HLKIINGKPLYVGLAEKREQRLSRLQQRF 499
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ + LK K+ EA+ +
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEAL----AK 836
Query: 450 AQQQANNPADQLASLSL 466
+++ +N + L SL
Sbjct: 837 NKKEYSNYVNNLLSLEF 853
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 182
++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+P
Sbjct: 2 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 60
Query: 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
EEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 61 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 101
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 70
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 71 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 103
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 15/230 (6%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
+ D +V V F+R+ +RE +A K+ F N+++KN+ + T+ D+K ++G + S +
Sbjct: 163 LGDSEVVVAPFVRRVDREVMAAKS-FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSE 221
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALN-----GKKFDDREWYVGKAQKKSEREQELKGQ 117
+K F V FE + A +A+ ALN G + V +A KSER++E K
Sbjct: 222 HAPFPTK-FALVAFEEHEAAVQAIAALNESEESGLTEKAAKLVVCRALSKSERDREKKK- 279
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
++ + G NLY+K+L D I D++L+E+F FG ITSC +M++P+G KG FV
Sbjct: 280 -----AASLYQNHGRNLYVKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFV 334
Query: 178 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMR 225
F + AS AL +NG+ + KPLYV+ A++K+ R LQ + + MR
Sbjct: 335 CFEDRQHASAALRSLNGQPLEHSKKPLYVSHAEQKDMRIRLLQQRRAAMR 384
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 19 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78
R+ + K+ NNVFVK LD + ++L+ F + G + S V D G SK +GFV FE
Sbjct: 89 RDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFET 148
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
A+ A A++ +NG K D E V ++ +RE F N+YIKN
Sbjct: 149 AEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKSFR-------------NIYIKN 194
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN----- 193
+ + + +K +FG + S + + + VAF E A +A+A +N
Sbjct: 195 IAAAATEADVKAAAEKFGKVNSL-FLSEHAPFPTKFALVAFEEHEAAVQAIAALNESEES 253
Query: 194 ------GKMIVSKPLYVAVAQRKEERRARL 217
K++V + L + R++++ A L
Sbjct: 254 GLTEKAAKLVVCRALSKSERDREKKKAASL 283
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 29 NNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKA 85
+V+V +L D +E + +F + S V RD +S +G+VNF+ DA K
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSID 144
++ALN Y G A + +++ F ++++ + + G+ N+++K L +I+
Sbjct: 68 IDALN---------YTGIAPGR-----QIRVMF--SIRDPLQRKSGMNNVFVKKLDTAIN 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++L+ F++ G + SCKV D +G SKG GFV F T E A AL +MNG + + V
Sbjct: 112 AKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAAL-DMNGSKLGDSEVVV 170
Query: 205 AVAQRKEER 213
A R+ +R
Sbjct: 171 APFVRRVDR 179
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 382 LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 441
L+ SPEQQ+ LGE LY + LE AAK+TGMLLEM + E+ +L AL +K+ E
Sbjct: 474 LSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILADHFALLSKIQE 533
Query: 442 AMEVLRSVAQQQANN 456
A VL QQ N
Sbjct: 534 ANAVL----QQHTGN 544
>gi|168018575|ref|XP_001761821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686876|gb|EDQ73262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 153
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/145 (58%), Positives = 108/145 (74%), Gaps = 8/145 (5%)
Query: 331 YRY-PLGRNMQDF--PFDMGAGSMLPVPVDMGAGIPRRDASVG---QPMPITALSTALAN 384
+RY P RN D P +MLPVP+++G G P + G QP+PI+AL++ALA+
Sbjct: 10 FRYIPNARNTPDVSVPPQGIINTMLPVPLEIG-GAPAANVDPGVPQQPLPISALASALAS 68
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
A P+QQR +LGE LYPLV+QLE D A KVTGMLLEMDQTEVLHL+ESP+ALKAKVAEAME
Sbjct: 69 APPDQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPDALKAKVAEAME 128
Query: 445 VLRSVAQQQANNPADQLASLSLNEN 469
VLR +AQ + P DQL +LS++++
Sbjct: 129 VLR-MAQAVPSAPTDQLGNLSISDS 152
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 90/128 (70%), Gaps = 1/128 (0%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG Q ++ R LK +F+ E+ +K G+NLYIKNL DS++D+ LKELF +GTIT
Sbjct: 375 YVGPHQSRARRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTIT 434
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVM+D SKG GFV F T EEA++A+ EM+ K+I KPLYV +A+++E R +RLQ
Sbjct: 435 SAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQ 494
Query: 220 QFSQMRPV 227
+F +M P+
Sbjct: 495 RF-RMNPI 501
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD++ ++ L F +G I S V D GKSK +GFV++E+ + A +A+E +
Sbjct: 105 NIFVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKV 164
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + YVG KKSER A +T KF NLY+KN D++ + LK
Sbjct: 165 NGMQLGSKNVYVGHFIKKSER----------ATNDT--KF--TNLYVKNFPDTVTEAHLK 210
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
+LFS +G ITS V D ++ F+ +S + A A+ +NGK I
Sbjct: 211 QLFSPYGEITSMIVKSDNK--NRKFCFINYSDADSARNAMENLNGKKIT 257
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L E T+ L +IF G + S V RD KS + +VN+ N DA +A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y +KGQ + M D K N+++KNL +ID+
Sbjct: 78 N---------YTN-----------IKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDN 117
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVG 177
Query: 206 VAQRKEER 213
+K ER
Sbjct: 178 HFIKKSER 185
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M + K V+VGHF++K ER T TKF N++VKN ++ T+ LK++F YG ITS +V
Sbjct: 167 MQLGSKNVYVGHFIKKSERATN--DTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV 224
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 94
D K++ F F+N+ +AD A A+E LNGKK
Sbjct: 225 --KSDNKNRKFCFINYSDADSARNAMENLNGKKI 256
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ + LK K+ EA+ VL++
Sbjct: 773 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALVVLQN 831
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 118/197 (59%), Gaps = 22/197 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQK--KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FG I SCKVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+
Sbjct: 114 ALYDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 172
Query: 207 AQRKEERRARLQAQFSQ 223
AQRKEER+A L Q+ Q
Sbjct: 173 AQRKEERKAHLTNQYMQ 189
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S VM + DG+SK FGFV F
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVMLE-DGRSKGFGFVCFS 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+ ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 147 SPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 189
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 86/122 (70%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YV +AQ K+ER LK QF +F G+NLY+KNLG+++DD +LK +F FGTIT
Sbjct: 51 YVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTIT 110
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 219
S KVM D G+S+G GFV FST EEA++A+ +M+ K+I KPLYV + +++E+R RLQ
Sbjct: 111 SVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQ 170
Query: 220 QF 221
++
Sbjct: 171 RY 172
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNL E+ D +LK++F +GTITS VM D G S+ FGFV F ++A KAV +
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 143
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ K + YVG +K+ +R + L+ ++
Sbjct: 144 HLKLIGGKPLYVGMHEKREQRLERLQQRY 172
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
Query: 100 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 159
YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTIT
Sbjct: 2 YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 61
Query: 160 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
S KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 62 SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 15/98 (15%)
Query: 8 VFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGT 54
++VG +K ER+T +K KF N++VKNLD+ DE L+K F +GT
Sbjct: 1 IYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 59
Query: 55 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 92
ITSA VM +G G+SK FGFV F + ++A KAV +NG+
Sbjct: 60 ITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 96
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 13/174 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ +KN+D D+ L+++F +GTI S +MRD GKSK +GFV + + A+KA+ A +
Sbjct: 250 LVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAATH 309
Query: 91 GKKFD------DREWYVGKAQK---KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
G+ FD D + K+ R E++ E A + +F+ NL I+NLG+
Sbjct: 310 GQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVAR---IAQFRK-NLCIRNLGE 365
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
SID+++L+ LF+ FG I +C V+RD G S+ GFV F+T EEAS+A+AEM+GK
Sbjct: 366 SIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGK 419
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
++ V+NL ++E L + +G + A ++++ + G V + +DA A+ AL
Sbjct: 154 SLIVRNLPADASEESLAALCRPFGRVGVATIVQEAPEDAP-MGVVCLDRFEDALTAIRAL 212
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G K + V ++ERE E A+ + +++ QG L IKN+ +DD++L+
Sbjct: 213 HGSKLGSNQLSVTFPATRAERE------CESAVAQRLERLQG-KLVIKNMDVDMDDDQLE 265
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
ELF+ FGTI S +MRD +G SKG GFVA+ST E AS+A+A +G+ +++PL V +
Sbjct: 266 ELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAATHGQTFDRLTRPLDVTIF 325
Query: 208 QRKEE 212
E
Sbjct: 326 TSSEH 330
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
+ E I N+ ++NL ES ++ L+ +F +G I + V+RD G+S+ GFV+
Sbjct: 343 RHHAEVARIAQFRKNLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVD 402
Query: 76 FENADDAAKAVEALNGK-----------KFDDREWYV---------GKAQKKSEREQELK 115
F ++A+KAV ++GK R GK E E + +
Sbjct: 403 FATMEEASKAVAEMHGKPSPGTQMPMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAE 462
Query: 116 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
GQ +Y+KN+ +++ E L+ +F +FG I S +MRD +GISKG G
Sbjct: 463 GQIRPRKL----------IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIG 512
Query: 176 FVAFSTPEEASRALAEMNGKMIVS--KPLYVAV 206
V + + A A+A M+GK + + +PL V++
Sbjct: 513 HVDYLHADAARAAVAAMDGKRLTATGQPLRVSL 545
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++VKN+D + EDL+++FG++G I S+ +MRD G SK G V++ +AD A AV A++
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMD 530
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQ-FEQAMKETVDKFQGL---NLYIKNLGDSIDDE 146
GK+ GQ ++ + D+F + +L IKNL SI+
Sbjct: 531 GKRL------------------TATGQPLRVSLPDPRDRFSPIRYASLIIKNLEQSINLS 572
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L++LFS FG I S + + + V F + E A+A +NG ++ P+ +
Sbjct: 573 ALRDLFSPFGCILSSRTIE----TQPRAALVDFLSEEACQNAIANINGAIVNGLPVTASP 628
Query: 207 AQRKEERR---ARLQAQFSQMRPVAM 229
RK+ R A L A ++ ++ +A+
Sbjct: 629 YVRKDRRSVYVANLPANYNYVKLMAL 654
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 23/195 (11%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++N V ++RK R +V+V NL + L +F + G I + +V
Sbjct: 618 IVNGLPVTASPYVRKDRR----------SVYVANLPANYNYVKLMALFADCGKIVTTIVP 667
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
RD GFV F+ + + E +G + E YV + +++ E A
Sbjct: 668 RD----FSTVGFVCFDQPA-SVELAERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEVA 722
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
LY+ N+ ++K++EL + +GT+T+ V R G S+G FV F+
Sbjct: 723 PYHI--------LYLTNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTN 774
Query: 182 PEEASRALAEMNGKM 196
E+AS+A ++G++
Sbjct: 775 VEDASKAKDALSGQI 789
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 187
K + L +KNL +DD++L+++F EFGT+T CKV S G G V + + ++A
Sbjct: 75 KVGAIKLVVKNLDPRMDDQQLRDIFGEFGTMTLCKV-----ASSIGVGLVTYESFDDAHA 129
Query: 188 ALAEMNG 194
A+ ++NG
Sbjct: 130 AMTQVNG 136
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 36/202 (17%)
Query: 13 FLRKQERETV-AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 71
LR +R V AIK + VKNLD D+ L+ IFGE+GT+T V S
Sbjct: 67 LLRVHQRSKVGAIK-----LVVKNLDPRMDDQQLRDIFGEFGTMTLCKV-----ASSIGV 116
Query: 72 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 131
G V +E+ DDA A+ +NG + ++ V + ++
Sbjct: 117 GLVTYESFDDAHAAMTQVNGMYLNGQQVQVHRLPERP----------------------- 153
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
+L ++NL +E L L FG + ++++ G V E+A A+
Sbjct: 154 -SLIVRNLPADASEESLAALCRPFGRVGVATIVQEAPE-DAPMGVVCLDRFEDALTAIRA 211
Query: 192 MNGKMIVSKPLYVAVAQRKEER 213
++G + S L V + ER
Sbjct: 212 LHGSKLGSNQLSVTFPATRAER 233
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 126 bits (316), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/98 (62%), Positives = 79/98 (80%)
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
+++ QG NLY+KNL D+IDD +LKE FS+FG+ITS KVM D G SKG GFV F+T EEA
Sbjct: 1 MNRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEA 60
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
S+A+ EM+G++IVSKPLYV AQRKEER+A L +Q++
Sbjct: 61 SKAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNH 98
Score = 77.8 bits (190), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 61/96 (63%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
+T+ N++VKNLD++ D LK+ F ++G+ITSA VM D G SK FGFV F ++A+K
Sbjct: 3 RTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASK 62
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
A+ ++G+ + YV AQ+K ER+ L Q+
Sbjct: 63 AINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNH 98
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 6/148 (4%)
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NGK + VG AQK E++ ELK +FEQ +E + ++QG+NLYIKNL D++ DE L
Sbjct: 1 MNGKDISGKVISVGCAQKTVEQQAELKWKFEQLKQERISRYQGVNLYIKNLDDTVGDENL 60
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
++ FS FG+ITS KVM + G SKG GFV FS+P EA +A+ +MNG ++ SKPLYVA+A+
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSP-EAIKAVTKMNGCVMSSKPLYVALAR 118
Query: 209 RKEERRARLQAQFSQM----RPVAMGPS 232
R+ + A L Q Q R + GPS
Sbjct: 119 RRGKGSAYLTDQDMQWVAGKRALPAGPS 146
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNLD++ DE+L+K F +G+ITSA VM + DG+SK FGFV F ++ +A KAV +
Sbjct: 45 NLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCF-SSPEAIKAVTKM 102
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQ 117
NG + YV A+++ + L Q
Sbjct: 103 NGCVMSSKPLYVALARRRGKGSAYLTDQ 130
>gi|159164292|pdb|2DYD|A Chain A, Solution Structure Of The Pabc Domain From Triticum
Aevestium Poly(A)-Binding Protein
Length = 85
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 70/79 (88%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
PI AL++ALAN+ PE QR +LGE+LYPLV+QLE D AAKVTGMLLEMDQTEVLHLLESP+
Sbjct: 6 PIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPD 65
Query: 434 ALKAKVAEAMEVLRSVAQQ 452
ALKAKVAEAMEVLRS Q
Sbjct: 66 ALKAKVAEAMEVLRSAQQH 84
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
NLY+KNL DSIDD +LK+ F FG ITS KVM D + SKG GFV FS PEEA++A+ EM
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
NGK+ SKPLYVA+AQRKE+R+A L +Q+ Q
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQ 91
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+S D LK+ F +G ITSA VM D + +SK FGFV F N ++A KAV +
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
NGK + YV AQ+K +R+ L Q+ Q
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQ 91
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 106/209 (50%), Gaps = 50/209 (23%)
Query: 6 KQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
K+V H + K E+E++ +F NV+VKNL T++DL ++F G ++S +V
Sbjct: 193 KEVHASHQVLKNEKESLLSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLV 252
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
RD K K FGFVNFE +DA +AV L+ K F
Sbjct: 253 QRDDQHKPKGFGFVNFELPEDAERAVNELHDKDF-------------------------- 286
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAF 179
+ + DE L F +GTITS K+M+D S G KG GFV F
Sbjct: 287 ------------------FAEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCF 328
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQ 208
S+ +EA+RA+AEMNG+ I SKP+YVA+AQ
Sbjct: 329 SSSDEANRAVAEMNGRFISSKPIYVALAQ 357
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFG 72
L ERET + N+ +KNL + ++ L F +G + S V G S K +G
Sbjct: 109 LMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFNKLTGGSVKGYG 168
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FVN++ A +A+ +NGK +E + K+E+E L +Q + T
Sbjct: 169 FVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQQHCRFT------- 221
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+Y+KNL + ++ L ELFS G ++S V RD KG GFV F PE+A RA+ E+
Sbjct: 222 NVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAERAVNEL 281
Query: 193 NGK 195
+ K
Sbjct: 282 HDK 284
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 51 EYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 109
+G + S V RD +S + +NF D + A E LN K D + + SE
Sbjct: 58 HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFENLNHSKIDGTTYRL----MISE 113
Query: 110 REQELKGQFEQAMKETVDKFQGL-NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
RE T + G N+ +KNL ++D++ L + FS +G + SC+V +
Sbjct: 114 RE-------------TTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFNKLT 160
Query: 169 GIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217
G S KG GFV + T A RA++ +NGKM+ K ++ + K E+ + L
Sbjct: 161 GGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLL 210
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM 192
LY+ L ID+ LKE FG + S +V RD + S G + F TP++ S A +
Sbjct: 41 LYVGELAPHIDEAMLKE---HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFENL 97
Query: 193 NGKMIVSKPLYVAVAQRKEERRA 215
N I + +++R+ +R
Sbjct: 98 NHSKIDGTTYRLMISERETTKRV 120
>gi|47026849|gb|AAT08650.1| poly(A)-binding protein [Hyacinthus orientalis]
Length = 126
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 87/101 (86%), Gaps = 2/101 (1%)
Query: 371 QPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430
Q PI AL++ALANASPE QR +LGE+LYPLV QLE + AAKVTGMLLEMDQTEVLHLLE
Sbjct: 25 QQQPIIALASALANASPEHQRMMLGENLYPLVAQLETEHAAKVTGMLLEMDQTEVLHLLE 84
Query: 431 SPEALKAKVAEAMEVLRSVAQQQ--ANNPADQLASLSLNEN 469
SPE+L+ KVAEAMEVLR+VAQQQ +N +QL+SL+LN++
Sbjct: 85 SPESLRGKVAEAMEVLRNVAQQQHASNALHNQLSSLALNDD 125
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 140/504 (27%), Positives = 212/504 (42%), Gaps = 102/504 (20%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ T+ L ++F G + S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + +G N++IKNL +ID++ L
Sbjct: 122 LNYTVINGRPCRIMWSQRDPALRKNGQG----------------NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCK-----------------VMRDPS----------------------G 169
+ SE K V ++ S G
Sbjct: 166 HDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLG 225
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS-----QM 224
SKG GFV FS PE+A++A+A+MN +MI +KPLYVA+AQRK+ R+ +L+ +M
Sbjct: 226 KSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMRM 285
Query: 225 RPVAMGPSVPPRM---PMYPPG---------------PSGLGQQFLYGQAP---PAIIPP 263
+ A +P + P+Y PG P +G + G P PA P
Sbjct: 286 QSAAAQAGMPNQFMQQPVYFPGQQPGFLPQGGRGMPFPPNMGMPNIQGGRPGQYPAGFPQ 345
Query: 264 QAGFGYQQQLVPGMR-----------PAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQ 312
Q G G QQL P M PA A P F + Q QQ G G Q
Sbjct: 346 QGGRGIPQQLPPNMYGVPGQFPPGGFPAQANNPQFMA-AMQQVQQ-----ASMGGGRGQG 399
Query: 313 TQQPLPIMPHQ-MPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQ 371
+ P+ MP M P Y + Q G P G G P +
Sbjct: 400 GRGPMQGMPAGPMGPGAPGYPPNRQQPGQAGGRGGRNGQQGNFPPQGGRGAPGAGENT-P 458
Query: 372 PMPITALSTALANAS-PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430
P ++A+ L NA+ QQ+ ++GE ++P + + + A K+TGMLLEM+ +E++ L+E
Sbjct: 459 PQGLSAIQLQLNNATDARQQKQIIGELIFPKIAAQQPELAGKITGMLLEMENSELITLIE 518
Query: 431 SPEALKAKVAEAMEVLRSVAQQQA 454
A+K KV EA+ V + Q
Sbjct: 519 DDNAMKLKVDEALGVYEEYVKNQG 542
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 11/173 (6%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S ++ L F +G I S V + +G SK +GFV+FE + +
Sbjct: 96 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIR 154
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +D++ +VGK +SER ++ M E V +F N+YIKN GD D
Sbjct: 155 AIEKVNGMLLNDKKVFVGKFLTRSERIKK--------MGERVRQFT--NVYIKNFGDKYD 204
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
++ L+ +F ++G + S VMRD G S+G GFVA+ + EEA A+ MNG+ I
Sbjct: 205 EKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEI 257
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 8/100 (8%)
Query: 1 MLINDKQVFVGHFLRKQER-----ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 55
ML+NDK+VFVG FL + ER E V +F NV++KN + ++ L+ +F +YG +
Sbjct: 162 MLLNDKKVFVGKFLTRSERIKKMGERV---RQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 218
Query: 56 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 95
S VMRD DG S+ FGFV +++ ++A AVEA+NG++ +
Sbjct: 219 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIE 258
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F + G + S V RD +S + +VNF+ DA +A++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 73 MNYDPIKGRPIRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 116
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV + +G SKG GFV F T E RA+ ++NG ++ K ++V
Sbjct: 117 YDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFL 175
Query: 209 RKEERRARLQAQFSQMRPVAM 229
+ ER ++ + Q V +
Sbjct: 176 TRSERIKKMGERVRQFTNVYI 196
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D G S+ +GFV F++ + A A+E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G + ++ +V K + +REQE QF NLY+KN + ++ +KE
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
+F +G ITS K+M D G SK GFVAF P+ A A+ +NGK + K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 211 EERRARLQAQFSQMR 225
ER+ + + + +
Sbjct: 297 IERQQEINRKLEERK 311
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
+L N ++V V ++ +++RE T+F N++VKN +E +++++K++F YG ITS +
Sbjct: 191 ILCNSQKVHVVKYIPRRDREQEKA-TQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHKI 249
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D +G+SK FGFV FEN A AV ALNGK+ D+ YV +A K ER+QE+ + E+
Sbjct: 250 MTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINRKLEE 309
Query: 121 AMKE 124
++
Sbjct: 310 RKRQ 313
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 45/282 (15%)
Query: 7 QVFVGHFLRKQERET-----VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV- 60
++F RKQE + V ++ KF N F+KN ES T++DL+ + +YG ITS
Sbjct: 169 EIFDKEKRRKQEEQALENKPVKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFP 228
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKK---FDDREW-------YVGKAQKKSER 110
++DG SK F F NFE+ + A A++ L+GK+ F++ + Y+ KAQKK ER
Sbjct: 229 LKDGTFVSKGFAFANFESHESAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEER 288
Query: 111 EQELKGQFEQAMKETVDKFQGL--NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 168
E+ LK FEQ E Q + NLYI N+ I+ + + E+FSEFG+I S + D
Sbjct: 289 EEYLKRSFEQLSLEG----QNIKRNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAV 344
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
+ +V +ST +EA A+ + N I + L V + K ER M +
Sbjct: 345 NEQRKYAYVCYSTSDEAFIAIEKGNELFIDNNKLNVTYFKNKAERTKE-----KMMSSIN 399
Query: 229 MGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ 270
+ +VP F+Y + P I P + F Y+
Sbjct: 400 INSTVP----------------FIY--SSPLKITPNSSFNYE 423
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 18/208 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+ VKNL S T+E+L F +GTI SA + DGK K +GFV F+ A A++
Sbjct: 97 NLIVKNLPSSFTNENLYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHC 156
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ--GLNLYIKNLGDSIDDEK 147
+G K D++ V K+ R+QE EQA++ K + N +IKN +S ++
Sbjct: 157 DGGKLDNKIIQVEIFDKEKRRKQE-----EQALENKPVKLEPKFTNCFIKNFPESFTEKD 211
Query: 148 LKELFSEFGTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-------- 198
L+ L +++G ITS ++D + +SKG F F + E A A+ E++GK I
Sbjct: 212 LESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQELHGKQIFPFEENSYT 271
Query: 199 --SKPLYVAVAQRKEERRARLQAQFSQM 224
+P Y+ AQ+KEER L+ F Q+
Sbjct: 272 TKLEPFYIQKAQKKEEREEYLKRSFEQL 299
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
F ++V +L T + DL +IF G + + + + S F FV F N D A +A++
Sbjct: 11 FATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAFVTFANGDAADRAIK 69
Query: 88 ALNGKKFDDREWYVGKA-QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
N + + + V +KS+RE NL +KNL S +E
Sbjct: 70 EYNNFRLNKKNIRVLPCMDEKSKRE-------------------DANLIVKNLPSSFTNE 110
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FS FGTI S K+ G K GFV F + A A+ +G + +K + V +
Sbjct: 111 NLYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEI 170
Query: 207 AQRKEERRARLQAQFSQMRPVAMGP 231
+ E+R + + Q + +PV + P
Sbjct: 171 FDK--EKRRKQEEQALENKPVKLEP 193
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 17/247 (6%)
Query: 5 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 64
D Q V + Q R+ + +F N++VKNLD + TDE L+ F +YG ++SA V G
Sbjct: 161 DGQAIVVERYQAQHRDELL--KQFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLG 218
Query: 65 DGKSKC-FGFVNFENADDAAKAVEALNGKKFDDREWYVGKA------QKKSEREQELKGQ 117
+S+ G+V F+ +DAA+AVE LNGK E + KA + RE+ + +
Sbjct: 219 AVQSEAGLGYVAFQKHEDAARAVEELNGK-----ECEIAKAGSPLDVSRFRSREERQRDR 273
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGF 176
Q + + NLY+K D++ E+L+ELF +G S VM D +G+S+ GF
Sbjct: 274 ERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGF 333
Query: 177 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP 235
V+ AS+A+ E+NG +S +PL+V A RK+ RR L+ + Q R V P P
Sbjct: 334 VSMKDQNAASQAIQELNGSTFLSPRPLFVTYALRKDARRQNLEERSKQFR-VRQNPMGGP 392
Query: 236 RMPMYPP 242
M PP
Sbjct: 393 GMGAMPP 399
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 103/188 (54%), Gaps = 20/188 (10%)
Query: 12 HFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 69
+LR K +R+ ++ NN+ VK L +S LK++F ++G +T+ + D G+S+
Sbjct: 76 RYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESR 135
Query: 70 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 129
+ ++FE + A AV ++G + D + V + Q ++ EL QF
Sbjct: 136 GYARISFEREESAVDAVREMDGMEMDGQAIVVERYQ--AQHRDELLKQFT---------- 183
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTPEEASR 187
NLY+KNL ++ DEKL+ F+++G ++S KV RD + G G+VAF E+A+R
Sbjct: 184 ---NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAAR 239
Query: 188 ALAEMNGK 195
A+ E+NGK
Sbjct: 240 AVEELNGK 247
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 579
Query: 438 KVAEAMEVL 446
K+AEA +VL
Sbjct: 580 KIAEAQDVL 588
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GSKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTYA 110
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKE+FS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQA--IVVE 168
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 17/247 (6%)
Query: 5 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 64
D Q V + Q R+ + +F N++VKNLD + TDE L+ F +YG ++SA V G
Sbjct: 161 DGQAIVVERYQAQHRDELL--KQFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLG 218
Query: 65 DGKSKC-FGFVNFENADDAAKAVEALNGKKFDDREWYVGKA------QKKSEREQELKGQ 117
+S+ G+V F+ +DAA+AVE LNGK E + KA + RE+ + +
Sbjct: 219 AVQSEAGLGYVAFQKHEDAARAVEELNGK-----ECEISKAGSPLDVSRFRSREERQRDR 273
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGF 176
Q + + NLY+K D++ E+L+ELF +G S VM D +G+S+ GF
Sbjct: 274 ERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGF 333
Query: 177 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP 235
V+ AS+A+ E+NG +S +PL+V A RK+ RR L+ + Q R V P P
Sbjct: 334 VSMKDQNAASQAIQELNGSTFLSPRPLFVTYALRKDARRQNLEERSKQFR-VRQNPMGGP 392
Query: 236 RMPMYPP 242
M PP
Sbjct: 393 GMGAMPP 399
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 103/188 (54%), Gaps = 20/188 (10%)
Query: 12 HFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 69
+LR K +R+ ++ NN+ VK L +S LK++F ++G +T+ + D G+S+
Sbjct: 76 RYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESR 135
Query: 70 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 129
+ ++FE + A AV ++G + D + V + Q ++ EL QF
Sbjct: 136 GYARISFEREESAVDAVREMDGMEMDGQAIVVERYQ--AQHRDELLKQFT---------- 183
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTPEEASR 187
NLY+KNL ++ DEKL+ F+++G ++S KV RD + G G+VAF E+A+R
Sbjct: 184 ---NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAAR 239
Query: 188 ALAEMNGK 195
A+ E+NGK
Sbjct: 240 AVEELNGK 247
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L++L+SP L +
Sbjct: 511 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDS 570
Query: 438 KVAEAMEVL 446
K+AEA +VL
Sbjct: 571 KIAEAQDVL 579
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GSKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTYA 110
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKE+FS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQA--IVVE 168
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 17/247 (6%)
Query: 5 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 64
D Q V + Q R+ + +F N++VKNLD + TDE L+ F +YG ++SA V G
Sbjct: 161 DGQAIVVERYQAQHRDELL--KQFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLG 218
Query: 65 DGKSKC-FGFVNFENADDAAKAVEALNGKKFDDREWYVGKA------QKKSEREQELKGQ 117
+S+ G+V F+ ++AA+AVE LNGK E + KA + RE+ + +
Sbjct: 219 AAQSEAGLGYVAFQKHENAARAVEELNGK-----ECEIAKAGSPLDVSRFRSREERQRDR 273
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGF 176
Q + + NLY+K D++ E+L+ELF +G S VM D +G+S+ GF
Sbjct: 274 ERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGVSRCFGF 333
Query: 177 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPP 235
V+ AS+A+ E+NG +S +PL+V A RK+ RR L+ + Q R V P P
Sbjct: 334 VSMKDQNAASQAIQELNGSTFLSPRPLFVTYALRKDARRQNLEERSKQFR-VRQNPMGGP 392
Query: 236 RMPMYPP 242
M PP
Sbjct: 393 GMGAMPP 399
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 12 HFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 69
+LR K +R+ ++ NN+ VK L +S LK++F ++G +T+ + D G+S+
Sbjct: 76 RYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESR 135
Query: 70 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 129
+ ++FE + A AV ++G + D + V + Q ++ EL QF
Sbjct: 136 GYARISFEREESAVDAVREMDGMEMDGQAIVVERYQ--AQHRDELLKQFT---------- 183
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTPEEASR 187
NLY+KNL ++ DEKL+ F+++G ++S KV RD G G+VAF E A+R
Sbjct: 184 ---NLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAAQSEAGLGYVAFQKHENAAR 239
Query: 188 ALAEMNGK 195
A+ E+NGK
Sbjct: 240 AVEELNGK 247
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD E+L++L+SP L +
Sbjct: 520 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNAEILNMLDSPTMLDS 579
Query: 438 KVAEAMEVL 446
K+AEA +VL
Sbjct: 580 KIAEAQDVL 588
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K R + K Q+ S+R + N+ +K L S+D
Sbjct: 69 A-GSKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKSVDTYA 110
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKE+FS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQA--IVVE 168
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 76/92 (82%), Gaps = 1/92 (1%)
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
+ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PE
Sbjct: 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPE 66
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRA 215
EA++A+ EMNG+++ +KPLYVA+AQRKEER++
Sbjct: 67 EATKAVTEMNGRIVATKPLYVALAQRKEERQS 98
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +
Sbjct: 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 75
Query: 90 NGKKFDDREWYVGKAQKKSERE 111
NG+ + YV AQ+K ER+
Sbjct: 76 NGRIVATKPLYVALAQRKEERQ 97
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 199/449 (44%), Gaps = 105/449 (23%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ N+F+KNL+ S ++ L F +G+I S+ V+ + G S+ FGFV+FE + A K
Sbjct: 95 RSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQK 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR + +S+ L +
Sbjct: 154 AINTMNGMLLNDR-------KVRSDYPWSLASLCPATL---------------------- 184
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
I+SC + S SKG GFV FS+PEEA++A+ EMNG+++ +KPLYV
Sbjct: 185 -------------ISSCFQVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 231
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSV-PPRMPMYPPGPSGLGQQFLYGQAPPAIIPP 263
A+AQRKEER+A L Q+ + ++ S P + P Q Y A A + P
Sbjct: 232 ALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMYYSSASIAPMQP 291
Query: 264 QAGFGYQQQLVPGMRP---------AGAPMPNFF----------VP----VVSQGQQGQR 300
+ Q P + AP P VP VV+ G Q
Sbjct: 292 DPRWTAQPHGPSSTCPPAASVVQPLSTAPHPCIHLSSASQASSQVPHTQRVVNIGTQTTG 351
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
PGG P Q P++ H+ H+ +Q+ S + VP
Sbjct: 352 PGGEGSCIPGQ------PLLAHRGSSAVHS-----AHGVQE--------STVYVPGH--- 389
Query: 361 GIPRRDASVGQPMPITALSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 419
QP+ ++ L +A+P +Q+ ++GE LY L+ K+TGMLLE
Sbjct: 390 ----------QPLTVSML-----DAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLE 434
Query: 420 MDQTEVLHLLESPEALKAKVAEAMEVLRS 448
MD E+L LLESPE+L AK+ EA+ VL++
Sbjct: 435 MDNLELLLLLESPESLHAKIEEAVAVLKA 463
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 26/177 (14%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAK 84
++++V +L T+ L ++F GTI S V RD +S + ++NF+ DA +
Sbjct: 8 CSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLG 140
A++ +N + +KGQ + M D + G+ N++IKNL
Sbjct: 68 ALDTMNF--------------------EMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLE 107
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+SID++ L + FS FG+I S KV+ + G S+G GFV F T E A +A+ MNG ++
Sbjct: 108 NSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 163
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 16/230 (6%)
Query: 5 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 64
D Q V + Q R+ + +F N++VKNLD + TDE L+ F YG ++SA V G
Sbjct: 161 DGQAIVVERYQAQHRDELL--KQFTNLYVKNLDPAVTDEKLRAFFARYGAVSSAKVRDLG 218
Query: 65 DGKSKC-FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 123
+S+ G+V FE +DAA+AVE LNGK E + KA+ + + + Q +
Sbjct: 219 GVQSEVGLGYVAFEKHEDAARAVEELNGK-----ECEIAKAESTLDVSRFRSREERQRDR 273
Query: 124 ETVDKFQGL------NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGF 176
E + + NLY+K D++ E+L+ELF +G S VM D +G+S+ GF
Sbjct: 274 ERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGF 333
Query: 177 VAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQAQFSQMR 225
V+ AS+A+ E+NG + +PL+V A RK+ RR L+ + Q R
Sbjct: 334 VSMKDQNAASQAIQELNGSTFLCPRPLFVTYALRKDARRQNLEERSKQFR 383
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 20/189 (10%)
Query: 11 GHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS 68
+LR K +R+ ++ NN+ VK L ++ LK++F ++G +T+ + D G+S
Sbjct: 75 SRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLACDEKGES 134
Query: 69 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 128
+ + ++FE + A +AV+ ++G + D + V + Q ++ EL QF
Sbjct: 135 RGYARISFEREESAVEAVKEMDGMEMDGQAIVVERYQ--AQHRDELLKQFT--------- 183
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTPEEAS 186
NLY+KNL ++ DEKL+ F+ +G ++S KV RD G+ G G+VAF E+A+
Sbjct: 184 ----NLYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHEDAA 238
Query: 187 RALAEMNGK 195
RA+ E+NGK
Sbjct: 239 RAVEELNGK 247
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
L+ LAN +PEQQ+ +LGE LY + + AAK+TGMLLEMD +E+L +L+SP L +
Sbjct: 505 LAAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILSMLDSPVMLDS 564
Query: 438 KVAEAMEVL 446
K+AEA +VL
Sbjct: 565 KIAEAQDVL 573
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V LD ++ L F G +TS V D KS +G+VNF++ DA KA++
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K R + K Q+ S+R + N+ +K L ++D
Sbjct: 69 A-GTKLGSRYLRIAKIQRDPSKRRSGVN-----------------NILVKKLPKTVDTYA 110
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKELFS+FG +T+ + D G S+G ++F E A A+ EM+G + + + V
Sbjct: 111 LKELFSKFGRLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQA--IVVE 168
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + + R L QF+ + + P+V
Sbjct: 169 RYQAQHRDELLKQFTNLYVKNLDPAV 194
>gi|361067029|gb|AEW07826.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|376335371|gb|AFB32375.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335373|gb|AFB32376.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335375|gb|AFB32377.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335377|gb|AFB32378.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
gi|376335379|gb|AFB32379.1| hypothetical protein 0_12329_02, partial [Pinus cembra]
Length = 103
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
Query: 191 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMY--PPGPSGL 247
EMNGKM+ KPLYVA+AQRKEERRARLQAQF+QMR P+ + P++P + Y P P
Sbjct: 1 EMNGKMVGRKPLYVALAQRKEERRARLQAQFAQMRAPITVTPALPTNLSAYHHPGAPRLA 60
Query: 248 GQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 289
QQ YGQ P +IPPQ AGFGYQQQL+PG+RP A MPNF +
Sbjct: 61 PQQLFYGQGPHGLIPPQAAGFGYQQQLLPGIRPGMAQMPNFLL 103
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 97/160 (60%), Gaps = 11/160 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE E+ + ++ N+YIK
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFT----------NVYIK 112
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
N G+ ++DEKL+E+FS+FG S +VM D G S+ GFV
Sbjct: 113 NFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 74
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
NG ++ + ++V + ++ER A + A+ + V
Sbjct: 75 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNV 109
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE L++IF ++G S
Sbjct: 77 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKFGPALSI 136
Query: 59 VVMRDGDGKSKCFGFV 74
VM D GKS+ FGFV
Sbjct: 137 RVMTDDGGKSRSFGFV 152
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 113/218 (51%), Gaps = 12/218 (5%)
Query: 28 FNNVFVKNL--DESTTDEDLKKIFGEYGTITSA-----VVMRDGDGKSKCFGFVNFENAD 80
F NVF+K L D TD+DL F E+G + R DG S FGF NF++ +
Sbjct: 181 FTNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHE 240
Query: 81 DAAKAVEALNGKKFDDRE--WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
DA KAV+ALNGK+ + + + +AQ K+ER+ L Q + + ++ +G NLY+KN
Sbjct: 241 DAVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKN 300
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKM 196
S+ DE+ KE F +FG + C + R+ SKG GFV F T E A AL
Sbjct: 301 FDQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVITP 360
Query: 197 IVSKPLYVAVAQRKEER-RARLQAQFSQMRPVAMGPSV 233
+ K Y+ + + KEER R + Q Q AM P+
Sbjct: 361 LNGKTPYIGLFKMKEEREREKASNQRKQQPKGAMIPNT 398
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAV 86
+ VFV +L S + +K+IF +YG+ S V ++ K F FV FE+ + A +A+
Sbjct: 5 WKEVFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAI 64
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+N K D + + ++R A+K V L+I+ L ++I+
Sbjct: 65 SEVNYTKLDGVPIRILWSDPGTKR----------AIKNNVGA-----LFIRGLDENIEVS 109
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+L + FS FG I SCK+ +G S+G GF+ F ++A RA ++ I KP+ +
Sbjct: 110 QLHDAFSNFGEIVSCKIPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEF 168
Query: 207 AQR 209
Q+
Sbjct: 169 YQK 171
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 25/212 (11%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 82
AIK +F++ LDE+ L F +G I S + +GKS+ +GF+ F DDA
Sbjct: 89 AIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCKIPL-TNGKSRGYGFITFYKEDDA 147
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
+A L + + + QK + + E ET N++IK L
Sbjct: 148 KRAKTDLADASINGKPIQIEFYQKPTRKNPE----------ETF-----TNVFIKPLPAD 192
Query: 143 I--DDEKLKELFSEFGTITSC-----KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
I D+ L F EFG + R G S GF F E+A +A+ +NGK
Sbjct: 193 IFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGK 252
Query: 196 MIVSKPLYVAV--AQRKEERRARLQAQFSQMR 225
S + + AQ K ER+A L Q ++ R
Sbjct: 253 QHESGKVTFSCCRAQTKAERQAFLAKQSAEFR 284
>gi|83853826|gb|ABC47858.1| poly(A)-binding protein [Glycine max]
Length = 74
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 67/74 (90%)
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
YPLV++LE + AAKVTGMLLEMDQ EVLHL+ESP+ALKAKV EAM+VLR V QQQ+N+PA
Sbjct: 1 YPLVDKLEHETAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRKVTQQQSNSPA 60
Query: 459 DQLASLSLNENLVS 472
DQLASLSLN+N+ S
Sbjct: 61 DQLASLSLNDNVES 74
>gi|66821129|ref|XP_644081.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
gi|60472201|gb|EAL70154.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
Length = 904
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 122/236 (51%), Gaps = 34/236 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVK+L DEDL+ +F +YG + S+ VM D G S +GFV F + ++A A+E L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G ++ +++ L + K+ NL+IK L + D++L+
Sbjct: 170 DGYQYQNKK---------------LLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK---PLYVAV 206
+LF FG I CKVM D +G SK +GFV FS+ +AS+A+ MNG I PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 207 AQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIP 262
A ++++ +R Q +M+ + + P P++PP QFL P ++P
Sbjct: 275 ADTEQQKISRKQR---KMQTIYQEKIIAP--PIFPP-------QFL----QPTVLP 314
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
NN+F+K L TD+ L+K+F +G I VM D +G+SK GFV F + DA+KA++A
Sbjct: 197 NNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDA 256
Query: 89 LNGKKFDDREWY 100
+NG + + Y
Sbjct: 257 MNGVRINKDSGY 268
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL++ +L +DD L +LFS+FG + S +V+ D +G +KG GFV F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 192 MNGKMIVSKPLYVAVAQRKE 211
MNG I SK L V + KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAK 84
T N+FV +L D L ++F ++G + S V+ D D G++K +GFV F D+A K
Sbjct: 766 TNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALK 825
Query: 85 AVEALNGKKFDDREWYVGKAQKKSERE 111
+ +NG + + K + K+E+E
Sbjct: 826 CQKEMNGFRIGSK---FLKVKLKNEKE 849
>gi|361067031|gb|AEW07827.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|376335381|gb|AFB32380.1| hypothetical protein 0_12329_02, partial [Pinus mugo]
gi|376335383|gb|AFB32381.1| hypothetical protein 0_12329_02, partial [Pinus mugo]
gi|383170822|gb|AFG68672.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|383170823|gb|AFG68673.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
gi|383170824|gb|AFG68674.1| Pinus taeda anonymous locus 0_12329_02 genomic sequence
Length = 103
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)
Query: 191 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMY--PPGPSGL 247
EMNGKM+ KPLYVA+AQRKEERRARLQAQF+QMR P+ + P++P + Y P P
Sbjct: 1 EMNGKMVGRKPLYVALAQRKEERRARLQAQFAQMRAPITVTPALPTSLSAYHHPGAPRLA 60
Query: 248 GQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 289
QQ YGQ P +IPPQ AGFGYQQQL+PG+RP A MPNF +
Sbjct: 61 PQQLFYGQGPHGLIPPQPAGFGYQQQLLPGIRPGMAQMPNFLL 103
>gi|147770378|emb|CAN78155.1| hypothetical protein VITISV_032623 [Vitis vinifera]
Length = 602
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 401 LVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
L+ QLE + AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQAN+P +Q
Sbjct: 531 LLPQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQ 590
Query: 461 LASLSLNENLV 471
LASLSLN++LV
Sbjct: 591 LASLSLNDSLV 601
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 463
AAK+TGMLLEM QTE LHLLESPEALK+KVAEAM+VLR+VAQQQAN+P QL+S
Sbjct: 2 AAKLTGMLLEMGQTEFLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTXQLSS 55
>gi|376335365|gb|AFB32372.1| hypothetical protein 0_12329_02, partial [Abies alba]
gi|376335367|gb|AFB32373.1| hypothetical protein 0_12329_02, partial [Abies alba]
gi|376335369|gb|AFB32374.1| hypothetical protein 0_12329_02, partial [Abies alba]
Length = 102
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 76/102 (74%), Gaps = 3/102 (2%)
Query: 191 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPRMPMYPPGPSGLG- 248
EMNGKM+ KPLYVA+AQRKEERRARLQAQF+QMR P+ + P++P + Y PG L
Sbjct: 1 EMNGKMVGRKPLYVALAQRKEERRARLQAQFAQMRAPIGVTPALPISLSAYHPGAPRLAP 60
Query: 249 QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV 289
QQ YGQ P +IPPQ AGFGYQQQL+PG+RP A PNF +
Sbjct: 61 QQLFYGQGPHGLIPPQPAGFGYQQQLLPGIRPGMAXXPNFLL 102
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 134/301 (44%), Gaps = 75/301 (24%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+I+D + V + E + +F N++VKNLD S DE LK++F +G +TSA V
Sbjct: 159 MVIDDCAITVERYQPHHREEQL---KQFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKV 215
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
G ++ F +V + + AAKAVE L D++E + K +
Sbjct: 216 RDLGANQTVGFAYVAYATHEAAAKAVEEL-----DEKESPLAK----------------E 254
Query: 121 AMKETVDKFQGL----------------------NLYIKNLGDSIDDEKLKELFSEFGTI 158
MK +V +F+ NLY+KN D++ E+LKELF G
Sbjct: 255 GMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFDDTVTSERLKELFERCGET 314
Query: 159 TSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRAR 216
S VM D + +S+ GFV+F ASRA+ E++G + +PL+V A RK+ RR
Sbjct: 315 VSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQELHGSTALGPRPLFVTYALRKDARRQT 374
Query: 217 LQA-----------------------QFSQMRPVAMGPSVP---PRMPMYPPGPSGLGQQ 250
L+ Q M P AM VP PRM M P P G+G Q
Sbjct: 375 LEDMRNKQPRMRQPPMGSLMGGMMGPQLGFMGPQAMFNGVPFVNPRMSMM-PTPMGMGGQ 433
Query: 251 F 251
Sbjct: 434 L 434
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
+ K +R+ ++ N+ VK L S LK++F +YG +T+ + + +G+S+ +
Sbjct: 81 IAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAIGLATNENGESRGYAR 140
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
+++E + A +AV+ +NG DD V + Q RE++LK Q N
Sbjct: 141 ISYEKEESAIQAVQEVNGMVIDDCAITVERYQPH-HREEQLK--------------QFTN 185
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
LY+KNL S++DEKLKE+FS FG +TS KV + + G +VA++T E A++A+ E++
Sbjct: 186 LYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVEELD 245
Query: 194 GK 195
K
Sbjct: 246 EK 247
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Query: 363 PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQ 422
P+ AS GQ LST LAN +PEQQ+ +LGE LY + + AAAKVTGMLLEMD
Sbjct: 466 PQSLASQGQ-----NLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDN 520
Query: 423 TEVLHLLESPEALKAKVAEAMEVL 446
E+L+LL++P L AKV EA+EVL
Sbjct: 521 GEILNLLDTPGLLDAKVQEALEVL 544
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K + + K Q+ S+R + N+ +K L S+D
Sbjct: 70 A-GVKLGSKHIRIAKIQRDPSKRRSGVT-----------------NIVVKKLPPSVDTYA 111
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKE+FS++G +T+ + + +G S+G +++ E A +A+ E+NG +I + V
Sbjct: 112 LKEMFSKYGRLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVI--DDCAITVE 169
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + R QF+ + + PSV
Sbjct: 170 RYQPHHREEQLKQFTNLYVKNLDPSV 195
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 31/220 (14%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
L+ K +F F+ K ER V N VF +N DES T E +++ ++G I +
Sbjct: 273 LVLGKPIFCEPFVAKVERYKVE-----NKVFFRNADESVTQEMIQEELSKFGEIEICTLK 327
Query: 62 RDGDGKSKCFGFVNFENADDAAK--AVEA----LNGK--KFDDREWYVGKAQKKSEREQE 113
D GKSK G V F+N +DA K AVEA +NGK FD + + K ER E
Sbjct: 328 IDSTGKSKGLGTVEFKNCEDAQKLLAVEADSIQINGKPITFD-------RVKNKIERVTE 380
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L+ K+T D+ L++ N+ +SI+ E +KE FS+ G I CK+++D SG +KG
Sbjct: 381 LR-------KKTTDQ----TLFLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKG 429
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
GF+ FS EA++AL +NG +K + V+++ KE++
Sbjct: 430 YGFITFSEVSEANKALEALNGFTFGNKQITVSLSSNKEQQ 469
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 20/191 (10%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENADDA 82
++ +++V +L + L ++F + G I S V RD + +S + +VNF N DA
Sbjct: 117 SQLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDA 176
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
+A++ LN + + + + + + G N+++KNL +
Sbjct: 177 ERALDTLNYSMIHGKPCRIMWSYRDPTKRKTNVG----------------NVFVKNLEKA 220
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202
+D+ L ++FS FG I SCKV + GISKG G+V F T E + +A+ +NG +++ KP+
Sbjct: 221 VDNAMLYDVFSSFGNILSCKVEYEK-GISKGYGYVHFETSESSGKAIERINGTLVLGKPI 279
Query: 203 YVAVAQRKEER 213
+ K ER
Sbjct: 280 FCEPFVAKVER 290
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT NVFVKNL+++ + L +F +G I S V + G SK +G+V+FE ++ + K
Sbjct: 206 KTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSCKVEYE-KGISKGYGYVHFETSESSGK 264
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-LYIKNLGDSI 143
A+E +NG +GK F + V++++ N ++ +N +S+
Sbjct: 265 AIERINGT------LVLGKP------------IFCEPFVAKVERYKVENKVFFRNADESV 306
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA-EMNGKMIVSKPL 202
E ++E S+FG I C + D +G SKG G V F E+A + LA E + I KP+
Sbjct: 307 TQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLAVEADSIQINGKPI 366
Query: 203 YVAVAQRKEERRARLQAQ 220
+ K ER L+ +
Sbjct: 367 TFDRVKNKIERVTELRKK 384
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEAS 186
Q +LY+ +L +++ L ELFS+ G I S V RD + S G +V F +A
Sbjct: 118 QLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAE 177
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERR 214
RAL +N MI KP + + R +R
Sbjct: 178 RALDTLNYSMIHGKPCRIMWSYRDPTKR 205
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 214
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVAF +P+ A A+ ++GK + +K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 275 KAERQQEINRKLEERKRQKAG 295
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 169 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 227
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV FE+ A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 228 MLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 287
Query: 120 QAMKE 124
+ ++
Sbjct: 288 ERKRQ 292
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 10/136 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
MLI +VFVGHF ++Q+R + N +VKN+ TD DL K F +G + SAVV
Sbjct: 79 MLIAGTEVFVGHFQKRQDRPDA---DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVV 135
Query: 61 MRDGDG--KSKCFGFVNFENADDAAKAVEALNGKKFD-----DREWYVGKAQKKSEREQE 113
M+D +++ FGFVN+E+++ A KAV+ALNGK + + E YVGKAQK+SERE+E
Sbjct: 136 MKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSERERE 195
Query: 114 LKGQFEQAMKETVDKF 129
L+ +FEQ E ++K+
Sbjct: 196 LRNKFEQLKMERINKY 211
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 23/209 (11%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 83
K+ N+FVKNLD S ++ L F +G I S V D G SK +G+V++E A+ A
Sbjct: 11 KSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAAT 70
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
+A+ +NG E +VG QK+ +R D N Y+KN+
Sbjct: 71 EAIAKINGMLIAGTEVFVGHFQKRQDRP---------------DADDWTNCYVKNIPTQW 115
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMI---- 197
D L + F FG + S VM+D + ++G GFV + E A +A+ +NGK
Sbjct: 116 TDADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGE 175
Query: 198 -VSKPLYVAVAQRKEERRARLQAQFSQMR 225
V LYV AQ++ ER L+ +F Q++
Sbjct: 176 GVETELYVGKAQKRSERERELRNKFEQLK 204
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 372 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLES 431
P P+T S ALA ASPE Q+ ++GE LYPL+ + + + A K+TGMLLEMD E+LHLLES
Sbjct: 240 PEPLT--SAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLES 297
Query: 432 PEALKAKVAEAMEVLRS 448
PEAL+AK++EA+ VL +
Sbjct: 298 PEALEAKISEALAVLEA 314
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 14/196 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F+ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNLG+ ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLGEEFTEQHLRE 221
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 210 KEERRARLQAQFSQMR 225
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLGEEFTEQHLREMFEPYGRITSHKL 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 235 MLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 294
Query: 120 QAMKE 124
+ ++
Sbjct: 295 ERKRQ 299
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 15 RKQERETVAIKTKFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK 69
R E E VA + + N++V+ L +TT +DL +IF YG + S ++ D G SK
Sbjct: 76 RDIEYEHVATEHELKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSK 135
Query: 70 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 129
+GF+NF + +A KA++ LNG D +V K +R +EL+ + K
Sbjct: 136 GYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKELE----------MRKL 185
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189
+ NLY+KN D + EKL ++F ++G + S + + ++G F+ F + E+A RA
Sbjct: 186 KYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQ 245
Query: 190 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQ 249
++G I P Y + E R+ R+Q Q + +P + P P MP P + L
Sbjct: 246 ENLDGFEIA--PGYRLQLGKAERRKDRMQNQMNSYKPNYL-PFQPQYMPPQPEHSNNLYP 302
Query: 250 QFL 252
F+
Sbjct: 303 SFI 305
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 66/280 (23%)
Query: 3 INDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
++ +FV H + K++R E K K+ N++VKN + T E L ++FG+YG + S +
Sbjct: 160 VDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFL 219
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY---VGKAQKKSEREQELKGQ 117
+ ++ + F+NF++ +DA +A E L+G F+ Y +GKA+++ +R Q
Sbjct: 220 PQGTGNHNRGYAFINFKSHEDAVRAQENLDG--FEIAPGYRLQLGKAERRKDRMQNQMNS 277
Query: 118 F------------------------------EQAMKETVD-------KFQGLNLYIKNLG 140
+ + + T ++Q NLYI +L
Sbjct: 278 YKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYIIHLP 337
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRDP-------------------SGISKGSGFVAFST 181
D+ L ELF+ FG I S K+M P G S+G GFV F+
Sbjct: 338 LEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVCFNK 397
Query: 182 PEEASRALAEMNGKMI-VSKPLYVAVAQRKEER--RARLQ 218
P +AS+AL MNG + S L V+ AQRKE + + RL
Sbjct: 398 PLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLH 437
>gi|323650114|gb|ADX97143.1| polyadenylate-binding protein 1 [Perca flavescens]
Length = 263
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 43/287 (14%)
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 230
+K FV FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 1 AKVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRA 60
Query: 231 PSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPP---QAGFGYQQQLVPGMRPAGAPMPNF 287
P P P PSG F+ A IP +A + QL +RP+ P +
Sbjct: 61 VPNPVLNPYQPAPPSGY---FM------AAIPQAQNRAAYYSANQLA-QLRPS----PRW 106
Query: 288 FVPVVSQGQQGQR----PGGRRGAGPVQQT------------QQPLPIMPHQMPPRGHAY 331
+QG + Q P R + P QT Q P + +MP + +
Sbjct: 107 ----ATQGVRPQHFQNMPNAMRPSAPRPQTFNAIRPTTTPNAQVPRMMASQRMPTQALSQ 162
Query: 332 RYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
R P G + P M P + + V P+TA + LA A P++Q+
Sbjct: 163 R-PTGASATAAPVRAMPQHMASQP---QVAMQQPAVHVQGQEPLTA--SMLAAAPPQEQK 216
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
+LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++K
Sbjct: 217 QMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 263
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 68 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
+K FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 1 AKVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 55
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KN+DES ++ L +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG + + ER E+ + AM+ T N+YIK
Sbjct: 63 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAK---AMEFT-------NVYIK 112
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
N + ID EKLK +FSEFG S VM D SG S+G GFV
Sbjct: 113 NFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N++IKN+ +SID++ L + S FG I SCKV+ D +G SKG GFV F T E A+RA+ M
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQ 220
NG ++ + ++V + ++ER A + A+
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEMGAK 102
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ER E A +F NV++KN E E LK IF E+G S
Sbjct: 77 MLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEFGKTLSV 136
Query: 59 VVMRDGDGKSKCFGFV 74
VM D G S+ FGFV
Sbjct: 137 CVMTDESGCSRGFGFV 152
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 211
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVAF +P+ A A+ ++GK + +K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 272 KAERQQEINRKLEERKRQKAG 292
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 166 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 224
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV FE+ A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 225 MLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 284
Query: 120 QAMKE 124
+ ++
Sbjct: 285 ERKRQ 289
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 14/196 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 164 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 210
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVAF P+ A A+ ++GK + +K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 210 KEERRARLQAQFSQMR 225
K ER+ + + + +
Sbjct: 271 KAERQQEINRKLEERK 286
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 165 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 223
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV FEN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 224 MLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 283
Query: 120 QAMKE 124
+ ++
Sbjct: 284 ERKRQ 288
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVK+L TDEDL K+F YG + S+ VM D G S +GFV F N +++ A++ L
Sbjct: 95 NIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQAAIKEL 154
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G +F +++ L + K NL+IK L + DE+L+
Sbjct: 155 DGFQFQNKK---------------LLCRLSNLYTNLNSKNPSNNLFIKPLPADVTDEQLR 199
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVA 207
+LF +G I CKVM D +G SK +GFV F EA+ A+ MNG I S PL V A
Sbjct: 200 KLFEPYGKIVECKVMLDQNGQSKFAGFVRFFNDSEAASAIDAMNGIKITKDSYPLVVKYA 259
Query: 208 QRKEERRARLQ 218
++++ R Q
Sbjct: 260 DTEQQKVVRKQ 270
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
NN+F+K L TDE L+K+F YG I VM D +G+SK GFV F N +AA A++A
Sbjct: 182 NNLFIKPLPADVTDEQLRKLFEPYGKIVECKVMLDQNGQSKFAGFVRFFNDSEAASAIDA 241
Query: 89 LNGKKFDDREW-----YVGKAQKKSEREQ-ELKGQFEQAM 122
+NG K + Y Q+K R+Q +L+ F++ +
Sbjct: 242 MNGIKITKDSYPLVVKYADTEQQKVVRKQRKLQTIFQEKI 281
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL++ +L IDD L +LFS++G + S +V+ D +G +KG GFV F E+A + E
Sbjct: 512 NLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKE 571
Query: 192 MNGKMIVSKPLYVAV 206
MNG I SK L V +
Sbjct: 572 MNGFRIGSKYLKVKL 586
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+FV +L D L ++F +YG + S V+ D D G++K +GFV F N +DA K +
Sbjct: 512 NLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKE 571
Query: 89 LNG 91
+NG
Sbjct: 572 MNG 574
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 108/209 (51%), Gaps = 12/209 (5%)
Query: 15 RKQERETVAIKTKFNNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 72
RK ET F NVF+K L T+EDL K+ ++G + + + DG S FG
Sbjct: 174 RKNSEET------FTNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFG 227
Query: 73 FVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 130
F NF DA KAVE+LNGK + E+ +AQ K+ER+ L Q + + ++ +
Sbjct: 228 FCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETR 287
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRA 188
G NLYIKN+ SI+DE+ +E F +FG + C + R+ SKG GFV F T E A A
Sbjct: 288 GRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNA 347
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERRARL 217
L + K LYV KEER L
Sbjct: 348 LKNTIITPLKGKILYVNYFIMKEEREHIL 376
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 45 LKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD---REWY 100
+K++F EYG S + ++ K F FV FE+ + A +A+ +N K D R +
Sbjct: 22 IKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEVNYTKLDGVPIRILW 81
Query: 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 160
A K++ +K F L I +L + I+ +L ++FS FG + S
Sbjct: 82 SDPATKRA-----IKKDF-------------CTLIIFDLDEYIEAAQLHDIFSNFGEVVS 123
Query: 161 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
CK+ +G +G G+V F E+A R ++ I KP+ + +
Sbjct: 124 CKIPL-TNGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVL 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 30/212 (14%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 82
AIK F + + +LDE L IF +G + S + +GK + G+V F +DA
Sbjct: 89 AIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCKIPL-TNGKPRGDGYVTFYKEEDA 147
Query: 83 AK-----AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A ++NGK Y +K SE ET N++IK
Sbjct: 148 MRVKNDLAQASINGKPIQIV-LYCKPTRKNSE--------------ETFT-----NVFIK 187
Query: 138 NLGDSI--DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
L +E L +L +FG + + + G S GF F ++A +A+ +NGK
Sbjct: 188 PLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGK 247
Query: 196 MIVSKPL-YVAV-AQRKEERRARLQAQFSQMR 225
M +S +V AQ K ER+A L Q ++ R
Sbjct: 248 MHISGEFEFVCCRAQTKAERQAFLAEQSAEFR 279
>gi|296238718|ref|XP_002764276.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 188
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 117 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176
+FEQ ++ + +QG+NLY+KNL DSIDD+KL++ FS +G I S KVM + S SKG GF
Sbjct: 3 RFEQMKQDWLSCYQGVNLYVKNLDDSIDDDKLRKEFSPYGMIISVKVMTEGSH-SKGFGF 61
Query: 177 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP 234
V FS PE A +A+ EMNG ++ +K LY+A+AQ KEE+RA L Q+ Q M S P
Sbjct: 62 VCFSYPEGAIKAITEMNGCIVGTKLLYMALAQCKEEQRAILTNQYMQHLSTIMTLSNP 119
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+S D+ L+K F YG I S VM +G SK FGFV F + A KA+ +
Sbjct: 19 NLYVKNLDDSIDDDKLRKEFSPYGMIISVKVMTEGS-HSKGFGFVCFSYPEGAIKAITEM 77
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
NG + Y+ AQ K E+ L Q+ Q +
Sbjct: 78 NGCIVGTKLLYMALAQCKEEQRAILTNQYMQHL 110
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + + F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 215
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVAF P+ A A+ ++GK + +K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 276 KAERQQEINRKLEERKRQKAG 296
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 170 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 228
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV FEN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 229 MLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 288
Query: 120 QAMKE 124
+ ++
Sbjct: 289 ERKRQ 293
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 282 KAERQQEINRKLEERKRQKAG 302
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 235 MLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 294
Query: 120 QAMKE 124
+ ++
Sbjct: 295 ERKRQ 299
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 282 KAERQQEINRKLEERKRQKAG 302
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 235 MLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 294
Query: 120 QAMKE 124
+ ++
Sbjct: 295 ERKRQ 299
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + + F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 218
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVAF P+ A A+ ++GK + +K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 279 KNERQQEINRKLEERKRQKAG 299
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 173 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 231
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV FEN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 232 MLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKLE 291
Query: 120 QAMKE 124
+ ++
Sbjct: 292 ERKRQ 296
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 129/275 (46%), Gaps = 42/275 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I+D + V + E + + + N++VKNLD S DE LK++F YG +TSA V
Sbjct: 159 MTIDDCPITVERYQPHHREEQLKL---YTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV 215
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK-AQKKSEREQELKGQFE 119
G S F +V + + A KAVE L DD+E + K K S + + +
Sbjct: 216 RDLGGKMSVGFAYVAYATHEAAVKAVEEL-----DDKENPLAKEGMKLSVCRFRSREERQ 270
Query: 120 QAMKETVDKFQGL-----NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKG 173
+ + + Q L NLY+KN D++ E+LKELF FG S VM D + +S+
Sbjct: 271 RERERLRRERQQLYSKYPNLYVKNFDDTVTSERLKELFERFGETVSVSVMVDKATKVSRC 330
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQA------------- 219
GFV+F ASRA+ E++G + +PL+V A RK+ RR L+
Sbjct: 331 FGFVSFKEQNSASRAIQELHGSTALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQTPM 390
Query: 220 ----------QFSQMRPVAMGPSVP---PRMPMYP 241
Q M P AM VP RMPM P
Sbjct: 391 GGLMGGMMGPQLGFMNPPAMFNGVPFMNTRMPMMP 425
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 17/172 (9%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
++ N+ VK L + LK++F +YG +T+ + + G+S+ + +++E + A +
Sbjct: 92 RSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAIGLATNEKGESRGYARISYEKEESAIE 151
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
AV+ +NG DD V + Q RE++LK NLY+KNL S+
Sbjct: 152 AVQGVNGMTIDDCPITVERYQPH-HREEQLKLY--------------TNLYVKNLDPSVG 196
Query: 145 DEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAEMNGK 195
DEKLKE+FS +G +TS KV RD G +S G +VA++T E A +A+ E++ K
Sbjct: 197 DEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAYVAYATHEAAVKAVEELDDK 247
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
LST LAN +PEQQ+ +LGE LY + ++ AAKVTGMLLEMD +E+L+LL++P L
Sbjct: 474 LSTMLANLTPEQQKNVLGERLYNHIVRVNPSVAAKVTGMLLEMDNSEILNLLDTPGLLDT 533
Query: 438 KVAEAMEVL 446
KV EA+EVL
Sbjct: 534 KVQEALEVL 542
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K + + + Q+ S+R + N+ +K L ++D
Sbjct: 70 A-GVKLGSKHIRIARIQRDPSKRRSGVT-----------------NIVVKKLPPTVDTYA 111
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
LKE+FS++G +T+ + + G S+G +++ E A A+ +NG I P+ V
Sbjct: 112 LKEMFSKYGRLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITV 168
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-VSKPLYVAVAQR 209
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 210 KEERRARLQAQFSQMRPVAMG 230
K ER+ + + + + G
Sbjct: 282 KAERQQEINRKLEERKRQKAG 302
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG ITS +
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKL 234
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELKGQFE 119
M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+ + E
Sbjct: 235 MLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLE 294
Query: 120 QAMKE 124
+ ++
Sbjct: 295 ERKRQ 299
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K GKA + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 90 MNMVKL------YGKALRLNKSAQDRR-NFDV----------GANVFLGNLDPDVDEKTI 132
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I S K+MRDP +G+S+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 208 QRKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 242
+K+ R R + ++ RP + P+ P + PP
Sbjct: 193 YKKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A AL MN + K L + + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K GKA + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 90 MNMVKL------YGKALRLNKSAQDRR-NFDV----------GANVFLGNLDPDVDEKTI 132
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I S K+MRDP +G+S+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 208 QRKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 242
+K+ R R + ++ RP + P+ P + PP
Sbjct: 193 YKKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A AL MN + K L + + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 23/219 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N K GKA + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 90 MNMVKL------YGKALRLNKSAQDRR-NFDV----------GANVFLGNLDPDVDEKTI 132
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I S K+MRDP +G+S+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 208 QRKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 242
+K+ R R + ++ RP + P+ P + PP
Sbjct: 193 YKKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A AL MN + K L + + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 23/218 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
+++ NLD D+ L ++F + G + + V RD G + +GFV F N DA A++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K GK+ + ++ Q+ + F+ G N+++ NL +D++ +
Sbjct: 91 NMVKL------YGKSLRLNKSAQDRR-NFDV----------GANIFLGNLDPDVDEKTIY 133
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I + K+MRDP +GIS+G GFV+F T E + ALA MNG+ I ++P++V+ A
Sbjct: 134 DTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 209 RKEERRARLQAQFSQM----RPVAMGPSVPPRMPMYPP 242
+K+ R R + ++ RP + P+ P + PP
Sbjct: 194 KKDTRGERHGSAAERLLAANRPQIINPNAPATGGVKPP 231
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+F+ NLD ++ + F +G I +A +MRD + G S+ FGFV+F+ + + A+ A
Sbjct: 117 NIFLGNLDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAA 176
Query: 89 LNGKKFDDREWYVGKAQKKSEREQE 113
+NG+ +R +V A KK R +
Sbjct: 177 MNGQFICNRPIHVSYAYKKDTRGER 201
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 180
+ + ++ Q LYI NL +DD+ L ELF + G + + V RD +G +G GFV F+
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFT 78
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
+A AL MN + K L + + ++RR
Sbjct: 79 NEVDADYALKLMNMVKLYGKSLR--LNKSAQDRR 110
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 127/268 (47%), Gaps = 32/268 (11%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
I+D + V + E + ++ N++VKNLD S DE LK++F ++G +TSA V
Sbjct: 161 IDDCSITVERYQPHHREEQL---KQYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRD 217
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQKKSEREQELKGQFEQA 121
G+ S F +V + + AAKAVE L+ K +E + RE+ + +
Sbjct: 218 LGNNSSVGFAYVAYATHEAAAKAVEELDEKSSTLAKEGMKLSVCRFRSREERQRERERVR 277
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFS 180
+ + NLY+KN D++ EKLKELF FG S VM D + +S+ GFV+F
Sbjct: 278 RERQQQHGKYPNLYVKNFDDTVTSEKLKELFERFGETVSVSVMMDKATQVSRCFGFVSFK 337
Query: 181 TPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQA-------------------- 219
AS+A+ E++G + +PL+V A RK+ RR L+
Sbjct: 338 EQSAASQAIQELHGSTALGPRPLFVTYALRKDARRQTLEDIRNKQPRMRQPPMGGLMSGM 397
Query: 220 ---QFSQMRPVAMGPSVP---PRMPMYP 241
Q M P M +P PRMPM P
Sbjct: 398 MAPQLGFMNPPTMFNGLPFMNPRMPMMP 425
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 15/182 (8%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
+ K +R+ ++ N+ VK L + LK++F ++G +T+ + D G+S+ +
Sbjct: 81 IAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAIGLATDEKGESRGYAR 140
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
+++E + A +AV LNG DD V + Q RE++LK Q N
Sbjct: 141 ISYEKEESAVEAVRELNGVSIDDCSITVERYQPH-HREEQLK--------------QYTN 185
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
LY+KNL S+DDEKLKE+F++FG +TS KV + S G +VA++T E A++A+ E++
Sbjct: 186 LYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVEELD 245
Query: 194 GK 195
K
Sbjct: 246 EK 247
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
LST LA+ PEQQ+ +LGE LY + + AAKVTGMLLEMD +E+L+LL+SP L
Sbjct: 483 LSTMLASLPPEQQKNVLGERLYNYIVRNNPSVAAKVTGMLLEMDNSEILNLLDSPSMLDT 542
Query: 438 KVAEAMEVLRS 448
KV EA++VL +
Sbjct: 543 KVQEALDVLNN 553
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K + + K Q+ S+R + N+ +K L ++D
Sbjct: 70 A-GVKLGTKHIRIAKIQRDPSKRRSGVT-----------------NIVVKKLPSTVDTYA 111
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKE+FS+FG +T+ + D G S+G +++ E A A+ E+NG I + V
Sbjct: 112 LKEMFSKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSI--DDCSITVE 169
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + R Q++ + + PSV
Sbjct: 170 RYQPHHREEQLKQYTNLYVKNLDPSV 195
>gi|147863287|emb|CAN82615.1| hypothetical protein VITISV_036127 [Vitis vinifera]
Length = 88
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 64/70 (91%)
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
R +LGESLYPLV+QLE + AAKVTGMLLEM QTE LHLLESPEALK+KVA+AM+VLR+VA
Sbjct: 7 RKMLGESLYPLVDQLEHEMAAKVTGMLLEMGQTEFLHLLESPEALKSKVAKAMDVLRNVA 66
Query: 451 QQQANNPADQ 460
QQQAN+P +Q
Sbjct: 67 QQQANSPTEQ 76
>gi|281206149|gb|EFA80338.1| RNA recognition motif-containing protein RRM [Polysphondylium
pallidum PN500]
Length = 640
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVK L D +L +F +G + SA VM D G S +GFV F + ++ KA++ +
Sbjct: 70 NVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSESKKAIDNM 129
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + ++L + +K+ NL++K L ++ D++LK
Sbjct: 130 DGFQL---------------MHKKLLCRLSNLYSNCNNKYPSNNLFLKPLPATLSDDQLK 174
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVS-KPLYVAVA 207
ELFS FG I CKVM D +G SK +GFV F +A++A+ MNG KM S PL V A
Sbjct: 175 ELFSPFGEILECKVMIDQNGNSKLAGFVRFCNEADATKAMQAMNGTKMKDSPAPLVVKYA 234
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
+ ++ R Q ++S + P P P Y +LY Q P
Sbjct: 235 DNEHQKSLRKQRKYSHF----INPH--PVNPYY-----NYVDHYLYFQVP 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
NN+F+K L + +D+ LK++F +G I VM D +G SK GFV F N DA KA++A
Sbjct: 157 NNLFLKPLPATLSDDQLKELFSPFGEILECKVMIDQNGNSKLAGFVRFCNEADATKAMQA 216
Query: 89 LNGKKFDDREW-----YVGKAQKKSEREQELKGQF 118
+NG K D Y +KS R+Q F
Sbjct: 217 MNGTKMKDSPAPLVVKYADNEHQKSLRKQRKYSHF 251
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM 192
L++ +L +DD L +LFS FG + S +V+ D +G +KG GFV F ++A +L EM
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 193 NGKMIVSKPLYVAVAQR 209
NG + K L V + +
Sbjct: 568 NGLQVGQKYLKVKLKDK 584
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 89
+FV +L D L K+F +G + S V+ D D G++K +GFV F+N DDA ++ +
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 90 NG 91
NG
Sbjct: 568 NG 569
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 26/233 (11%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D S+ +GFV++E
Sbjct: 130 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYE 189
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K +R+ E+K F N+
Sbjct: 190 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFDEMKANF-------------TNV 236
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE+ + +F +G ITS + RD G+S+G GFV F + A++A+ E++
Sbjct: 237 YVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHE 296
Query: 195 KMIVSKPLY-VAVAQRKEERRARLQAQFSQMRPVA---------MGPSVPPRM 237
+ + LY + + + R + ++ S R M S+PPR+
Sbjct: 297 SELKGQTLYPLELRKLASTRVSICTSRISMTRSTTSVSARSLPRMELSLPPRL 349
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K++R++ +K F NV+VKN+D TDE+ + +F YG ITSA
Sbjct: 204 MLLNEKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSA 263
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100
+ RD DG S+ FGFVNF+ AAKAVE L+ + + Y
Sbjct: 264 SLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQTLY 305
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 110/208 (52%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 54 SLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALEE 113
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 114 LNYTLIKGRPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDTAIDNKAL 157
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 158 HDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 217
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 218 PKKDRQSKFDEMKANFTNVYVKNIDPEV 245
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 113/199 (56%), Gaps = 13/199 (6%)
Query: 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87
F NVFVKN S T+ LK I +YG I S + + + F VNFE A+DAAKAVE
Sbjct: 230 FTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVE 289
Query: 88 ALNGKKFDDRE-----------WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
L+ K E +Y+ KA+++ ERE+ ++ Q E + ++ NLYI
Sbjct: 290 NLHNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGIN--SKNNLYI 347
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
++ ++ ++++++LFS+FGTI S K+ + S +K G++ F TPEEA+ A M+G +
Sbjct: 348 AHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTL 407
Query: 197 IVSKPLYVAVAQRKEERRA 215
+ + L ++ + K ERRA
Sbjct: 408 LDNSKLRISFYKAKNERRA 426
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 19/206 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKN+ + T + L +IF ++G+I S V D +G+S+ +GFV +E + A KA+ L
Sbjct: 137 NLFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+KF+ GK S ++ L+ Q + F N+++KN S+ + KLK
Sbjct: 197 RDEKFE------GKTLSISRFDRSLRDQKHSDSSSSTSSFT--NVFVKNFPSSLTEAKLK 248
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS---------- 199
++ ++G I S + + G V F E+A++A+ ++ K I S
Sbjct: 249 DILEKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVA 308
Query: 200 -KPLYVAVAQRKEERRARLQAQFSQM 224
P Y+ A+R++ER ++ Q +
Sbjct: 309 TCPFYIQKAERRKEREETIRKQLEAL 334
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 35 NLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 94
NL T+ +L +F + M+ D + FV F + +DA + VE N
Sbjct: 57 NLSPKTSIAELVALFSREPVAIEDIKMKKNDLIQSSYAFVTFLSIEDAKRIVEKYNYTTL 116
Query: 95 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFS 153
DRE + + + + F + NL++KN+ +KL E+F
Sbjct: 117 HDREMTL-------------------MILTSGNVFPENANLFVKNIPKEYTTKKLYEIFK 157
Query: 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+FG+I SCKV D +G S+G GFV + T E A +A+A++ + K L ++ R
Sbjct: 158 DFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGKTLSISRFDR 213
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 15 RKQERETV----------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 64
RK+ ET+ I +K NN+++ ++ E+ ++++++ +F ++GTI S + +
Sbjct: 320 RKEREETIRKQLEALSLKGINSK-NNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTS 378
Query: 65 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
+K FG++ F+ ++AA A EA++G D+ + + + K+ER E
Sbjct: 379 SENNKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRAE 427
>gi|449687377|ref|XP_002170842.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Hydra magnipapillata]
Length = 316
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 27/242 (11%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FVK L E D DL +F +G+ITS V+RD + +SK G V F +A A+ +N
Sbjct: 50 IFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIRKMN 109
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFE-----------------------QAMKETV- 126
G F + V + K E EL+ + ++ K++V
Sbjct: 110 GTMFMTKTLCVEFFKCKKESVPELRIKASSSIKSASLLDLSTRSAQSSTINPRSTKDSVK 169
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
+ + NL I+NL D +DD L LFS FG I S KVM +G SKG G+V + T EEAS
Sbjct: 170 NDLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVCYETNEEAS 229
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSV-PPRMPMYPPGPS 245
+A++ MNG + SK V E+R+ ++ + S+ R+ P G S
Sbjct: 230 KAISSMNGVQLSSKETLVITYY--EQRKNFNNVDGNKNEECCICYSILTTRIVFDPCGHS 287
Query: 246 GL 247
+
Sbjct: 288 CV 289
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
G +++K L + ++D L LF+ FG+ITSC V+RD + SKGSG V FST +EA+ A+
Sbjct: 47 GSKIFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAIR 106
Query: 191 EMNGKMIVSKPLYVAVAQRKEE 212
+MNG M ++K L V + K+E
Sbjct: 107 KMNGTMFMTKTLCVEFFKCKKE 128
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75
+ +++V K N+ ++NLD+ D L ++F +G I SA VM +GKSK +G+V
Sbjct: 162 RSTKDSVKNDLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKSAKVMTYNNGKSKGYGYVC 221
Query: 76 FENADDAAKAVEALNGKKFDDREWYV 101
+E ++A+KA+ ++NG + +E V
Sbjct: 222 YETNEEASKAISSMNGVQLSSKETLV 247
>gi|170032722|ref|XP_001844229.1| RNA-binding protein [Culex quinquefasciatus]
gi|167873059|gb|EDS36442.1| RNA-binding protein [Culex quinquefasciatus]
Length = 201
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 69/91 (75%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
NL++KNL ++IDD +L+E FS G +TS KVMR +G+S+G GFV F TP EA RA+ M
Sbjct: 38 NLFVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFRTPYEAQRAIFLM 97
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223
NG+++ KPL+V +AQ+KEERR L+AQF +
Sbjct: 98 NGRILDGKPLFVGIAQKKEERRKVLEAQFRK 128
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 85
T N+FVKNL E+ D L++ F G +TSA VMR +G S+ +GFV F +A +A
Sbjct: 34 TNLTNLFVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFRTPYEAQRA 93
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 124
+ +NG+ D + +VG AQKK ER + L+ QF + E
Sbjct: 94 IFLMNGRILDGKPLFVGIAQKKEERRKVLEAQFRKGKTE 132
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 31/242 (12%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
NN+ + L S T+ DL+++F +GTI + +M D KS +GFV FE A++AA+A++
Sbjct: 84 NNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAIQ 143
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
A+NG+++ ++ V A+ S G NLYIKNL +I +++
Sbjct: 144 AMNGRQYMNKRLKVSIARPSSS------------------SITGANLYIKNLPRTITEDQ 185
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 205
L+ +F+ FG I S +++ D + KG FV F A RA+AE+N + S+P+ V
Sbjct: 186 LRAIFNPFGEIISARLLYD-GDVPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVK 244
Query: 206 VAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA 265
A RA + + M YP P G F Q P + P Q
Sbjct: 245 FADTNRRSRAPSGSSAGMHQGSMMA---------YPSMPMPYGGGFQQPQPQPTMAPLQP 295
Query: 266 GF 267
GF
Sbjct: 296 GF 297
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 44/228 (19%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++KNL + T++ L+ IF +G I SA ++ DGD K FV F+ A +AV L
Sbjct: 171 NLYIKNLPRTITEDQLRAIFNPFGEIISARLLYDGD-VPKGIAFVRFDKRACAERAVAEL 229
Query: 90 NGK-----------KFDDRE------------WYVGKAQKKSEREQELKGQFEQAMKE-T 125
N KF D + G G F+Q + T
Sbjct: 230 NNTVPANCSQPIAVKFADTNRRSRAPSGSSAGMHQGSMMAYPSMPMPYGGGFQQPQPQPT 289
Query: 126 VDKFQ-------------------GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+ Q G L++ NL +D++ LF+ FG + S + R
Sbjct: 290 MAPLQPGFVPMSPDMLPPSARTPYGYCLFVFNLPPFMDEDGFARLFANFGGVVSASISRK 349
Query: 167 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214
++ GFV EA+ A+ +N + L V+ + R
Sbjct: 350 SLSQARRYGFVTMRDFGEAATAIQNLNDYDVFGYRLSVSFKSNRRNSR 397
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 7/230 (3%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNL--DESTTDEDLKKIFGEYGTITSAVV 60
IN K + + ++ RK R F NV++K L D+ TDEDL+KIF +G I + +
Sbjct: 160 INGKPIKIDNYNRKSRRNP---DEDFTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSL 216
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
+D +G SK FGF NF+ +DA KAVE LNG++ V + K E+E + +
Sbjct: 217 KKDENGNSKGFGFCNFKLHEDAVKAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTE 276
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAF 179
+++ ++ G NLY+K+ + D++ +E FS+FG I K+ R P + SKG GFV +
Sbjct: 277 KVEKFAEETNGRNLYVKSFSKDVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLY 336
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
+ E+A A+ + + YV Q K R++ + + RP A+
Sbjct: 337 KSKEDAQNAIEMAMLERLHGDLPYVGFFQTKAAHE-RVKVKNTHPRPSAV 385
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTI--TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+FV +L + + LK+ F E G I S +V++ F FV F + AAKA++
Sbjct: 8 IFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSSFAFVTFATHEQAAKAMKN 67
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN K D R + ++ K + +G +L+I L +SI+ +L
Sbjct: 68 LNYTKLDGRPIRILWCDTET--------------KAIIKSGRG-SLFINGLDESIEVSQL 112
Query: 149 KELFSEFGTITSCKV-MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I SCK+ + D G S+G G++ F PE A +A E+ I KP+ +
Sbjct: 113 HDAFSNFGEIISCKIPLTD--GKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNY 170
Query: 208 QRKEER 213
RK R
Sbjct: 171 NRKSRR 176
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 24 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 83
IK+ ++F+ LDES L F +G I S + DGKS+ +G++ F N ++A
Sbjct: 91 IKSGRGSLFINGLDESIEVSQLHDAFSNFGEIISCKIPL-TDGKSRGYGYIQFRNPENAE 149
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL-GDS 142
KA L + + + +KS R + + F N+YIK L D
Sbjct: 150 KAKLELADASINGKPIKIDNYNRKSRRNPD-------------EDFT--NVYIKPLPVDQ 194
Query: 143 ID-DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ DE L+++F FG I + + +D +G SKG GF F E+A +A+ +NG+ +
Sbjct: 195 VKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKAVEGLNGQEMFGVT 254
Query: 202 LYVAVAQRKEER 213
L V K E+
Sbjct: 255 LQVNRLMSKREK 266
>gi|444732122|gb|ELW72434.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 291
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 172
ELK +FEQ ++ + ++QG+NLY+KNL D IDD L++ FS FGTITS KVM + G SK
Sbjct: 2 ELKCKFEQMKQDRITRYQGVNLYVKNLDDGIDDASLRKEFSPFGTITSAKVMME-GGCSK 60
Query: 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
G GF FS PEEA++A+ EMNG+++ +KP V
Sbjct: 61 GFGFGCFSFPEEATKAVTEMNGRIVATKPFIV 92
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGML E+D +E+LH+LESPE
Sbjct: 221 PLTA--SMLASAPPQEQKQMLGEWLFPLIQAMHPTLAGKITGMLFEIDNSELLHMLESPE 278
Query: 434 ALKAKVAEAMEVL 446
+L++K EA+ VL
Sbjct: 279 SLRSKDDEAVAVL 291
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++VKNLD+ D L+K F +GTITSA VM +G G SK FGF F ++A KAV +
Sbjct: 22 NLYVKNLDDGIDDASLRKEFSPFGTITSAKVMMEG-GCSKGFGFGCFSFPEEATKAVTEM 80
Query: 90 NGKKFDDREWYV 101
NG+ + + V
Sbjct: 81 NGRIVATKPFIV 92
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79
E+ + T F N F+KN TT+++L ++ YG +TS DGK K F F NFE+
Sbjct: 97 ESKKVSTMFTNCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESH 156
Query: 80 DDAAKAVEALNGK-KFDDRE-----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQG-- 131
+ A A+ L+G FD + +Y+ K Q+K ER +EL+ FEQ QG
Sbjct: 157 ESALNAINNLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQL------SMQGQS 210
Query: 132 --LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189
NLYI N+ + E+L +F EFG+ITS V D + K ++ +STPEEAS A+
Sbjct: 211 YRKNLYITNIPEGFGAEELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAV 270
Query: 190 AEMNGKMIVSKPLYVAVAQRKEER 213
N + L V+ + K ER
Sbjct: 271 ERGNEIYLDGNRLQVSYFKNKLER 294
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNL ES T +DL F +G I S V GKSK +GFV F+ A K ++
Sbjct: 12 NIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAKKVIKNF 71
Query: 90 N--------GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
N G K E Y KK E K+ F N +IKN
Sbjct: 72 NNLNGLMLGGNKI-AVELY-NPDMKKGES------------KKVSTMFT--NCFIKNFPV 115
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-- 199
+++L EL +G +TS G KG F F + E A A+ ++G
Sbjct: 116 DTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSS 175
Query: 200 ----KPLYVAVAQRKEERRARLQAQFSQM 224
+P Y+ QRKEER L+ F Q+
Sbjct: 176 KDGGEPFYIQKGQRKEERAEELRKMFEQL 204
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+++ N+ E E+L IF E+G+ITS V DG K + ++ + ++A+ AVE
Sbjct: 214 NLYITNIPEGFGAEELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERG 273
Query: 90 NGKKFDDREWYVGKAQKKSEREQE 113
N D V + K ER +E
Sbjct: 274 NEIYLDGNRLQVSYFKNKLERMKE 297
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 5/181 (2%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
+ V+V NL TDE L ++F E+ + A VM+D + G+S+ F FV+ N +D +A
Sbjct: 914 HRVYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASA 972
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
ALNG++ D RE V KAQ ++ER + + D+ +G +Y NL +D
Sbjct: 973 ALNGREVDGRELRVSKAQAQAERGERPMRM--PRQRRDFDQAEGRRVYFGNLSWGMDQYD 1030
Query: 148 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L++L SEFG++ +++ D +G S+G GFV S EA +A++NG+ + + L V +
Sbjct: 1031 LQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQLNGQDVDGRVLRVNI 1090
Query: 207 A 207
A
Sbjct: 1091 A 1091
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEM 192
+Y+ NL + DE L ELFSEF + VM+D +G S+G FV+ + E+ RA A +
Sbjct: 916 VYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAAL 974
Query: 193 NGKMIVSKPLYVAVAQRKEER 213
NG+ + + L V+ AQ + ER
Sbjct: 975 NGREVDGRELRVSKAQAQAER 995
>gi|403354844|gb|EJY76981.1| Polyadenylate-binding protein, putative [Oxytricha trifallax]
Length = 590
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 195/460 (42%), Gaps = 74/460 (16%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR---DGDGKSKCFGF 73
Q ++ I+ FNN+++KN + E +++IFG+YGTI S V+ G + F F
Sbjct: 175 QPKDRREIRKTFNNIYIKNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAF 234
Query: 74 VNFENADD-------AAKAVEALNGKKFDDREWYVGKAQKKSEREQELK---GQFEQAMK 123
V +E+ D+ A A+ N K++D + YV +A K+ REQE K +F+ + K
Sbjct: 235 VCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKK 294
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
NLY+KN ++ +E+LK F ++G I S K+ FV + PE
Sbjct: 295 RC-------NLYVKNFPENTTEEQLKAYFEKYGEIESIKLNHKEGAAV--YAFVCYKNPE 345
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERR-----ARLQAQFSQMRPVAMGPSVPPRMP 238
A+ A + + + K L++ ++KE R+ AR + F +R + ++ M
Sbjct: 346 SATYAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLRKQSPTSALNIDML 405
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
P F Q L+ ++ QG
Sbjct: 406 NRP-----------------------ETFQLLQYLMITIQRQQQNQRY--NNPQRQGGNM 440
Query: 299 QRPGGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV- 354
Q+ G R+ G QQ Q LP QMPP R P P M + M +
Sbjct: 441 QQRGPRQQYNNQGGYQQRNQQLP--QGQMPPMNQQMRQPQQ------PVIMPSQVMPALA 492
Query: 355 ---PVDMGAGIPRRDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLE-RD 408
P M +P + Q I L +AL +P ++ +GE +Y VE+L D
Sbjct: 493 QVAPSAMNQNLPPHILTYNQNGMSKIFPLVSAL---NPN-YKSQVGEFIYEHVEELAGED 548
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGML+++ E+ + LK K+ EA +L+S
Sbjct: 549 LAPKITGMLIDLPIVEIQAYVTDFMKLKIKINEASTLLKS 588
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEY---GTITSAVVMRDGDGKSKCFGFVNFENADDA 82
K NN+F+KNLD+S T + L + F + + SA V + D S+ +GFV + A
Sbjct: 98 NKQNNLFIKNLDKSITSQQLDETFSKVLGGDVVVSAKVSINADYSSRGYGFVFLATPEQA 157
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
+A+ + KF+ V Q K RE +++T + N+YIKN +
Sbjct: 158 EQALAKASEFKFE-----VHPYQPKDRRE----------IRKTFN-----NIYIKNFPSN 197
Query: 143 IDDEKLKELFSEFGTITSCKV-MRDPSGISKGS--GFVAFST-------PEEASRALAEM 192
+ EK++++F ++GTI S + M G + + FV + P+ A A+ +
Sbjct: 198 WNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAFVCYEDKDNKEYGPKCALNAINQE 257
Query: 193 NGKMIVSKPLYVAVA---QRKEERRARLQAQF 221
N K LYV A +E+ + R Q +F
Sbjct: 258 NDKEYDGIKLYVKEALPKTLREQEKKREQNRF 289
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 74
+K+E+ K N++VKN E+TT+E LK F +YG I S + + +G + + FV
Sbjct: 282 KKREQNRFKNSKKRCNLYVKNFPENTTEEQLKAYFEKYGEIES-IKLNHKEG-AAVYAFV 339
Query: 75 NFENADDAAKA-----VEALNGKKF 94
++N + A A + LNGK+
Sbjct: 340 CYKNPESATYAKQQSQTQTLNGKQL 364
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 17/183 (9%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 73
+ K +R+ ++ N+ VK L + LK++F +YG +T+ + D G+S+ +
Sbjct: 81 IAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAIGLATDEKGESRGYAR 140
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
+++E + A AV LNG DD V + Q RE++LK Q N
Sbjct: 141 ISYEKEESAVDAVRELNGVSIDDCAITVERYQPH-HREEQLK--------------QYTN 185
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEM 192
LY+KNL S+DDEKLKE+FS FG +TS KV RD +G + G G+VA++T E A++A+ E+
Sbjct: 186 LYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHEAAAKAVEEL 244
Query: 193 NGK 195
+ K
Sbjct: 245 DDK 247
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 22/227 (9%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
I+D + V + E + ++ N++VKNLD S DE LK++F +G +TSA V R
Sbjct: 161 IDDCAITVERYQPHHREEQL---KQYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-R 216
Query: 63 DGDGKSKC-FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK--------SEREQE 113
D G+ FG+V + + AAKAVE L DD+E + K K E +
Sbjct: 217 DLAGRPTVGFGYVAYATHEAAAKAVEEL-----DDKESPLAKEGMKLSVCRFRSREERKR 271
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISK 172
+ + + ++ K+ NLY+KN D++ E+LK LF FG S VM D + +S+
Sbjct: 272 ERERLRRERQQQHSKYP--NLYVKNFDDTVTSERLKALFDPFGETVSVSVMMDKATKVSR 329
Query: 173 GSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQRKEERRARLQ 218
GFV+F A++A+ E++G + +PL+V+ A RK+ RR L+
Sbjct: 330 CFGFVSFKEQSSAAQAIQELHGSTALGPRPLFVSYALRKDARRQTLE 376
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 378 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 437
LST LA+ +P+QQ+ +LGE LY + + AAKVTGMLLEMD +E+L+LL++ L
Sbjct: 481 LSTVLASMTPDQQKNVLGERLYNYIVRNNPSFAAKVTGMLLEMDNSEILNLLDNHSLLDT 540
Query: 438 KVAEAMEVL 446
KV EA++VL
Sbjct: 541 KVQEALDVL 549
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD + ++ L F G + S V D KS +G+VNF+N DA KA++
Sbjct: 10 SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ 69
Query: 89 LNGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
G K + + K Q+ S+R + N+ +K L ++D
Sbjct: 70 A-GVKLGTKHIRIAKIQRDPSKRRSGVT-----------------NIIVKKLPPTVDTYA 111
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
LKE+FS++G +T+ + D G S+G +++ E A A+ E+NG I + V
Sbjct: 112 LKEMFSKYGRLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSI--DDCAITVE 169
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSV 233
+ + R Q++ + + PSV
Sbjct: 170 RYQPHHREEQLKQYTNLYVKNLDPSV 195
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 11 GHFLRKQERETVAIKTKFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 65
+ L Q V +KF+ N+ VKNLD+ T ++L F ++G I S + D
Sbjct: 148 NYVLNGQALRIVHSVSKFDYNPKANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPD 207
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 125
G S+ + F+ F++ ++A KA+ A+N + ++ + + +KK+ RE + +F
Sbjct: 208 GSSRGYAFIQFQSEEEAEKALNAMNQAEIKGKKIEINRHEKKATRENPQQTKFN------ 261
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
NL++KNL DD++LK LF +FG I S V RD G K G+V F P+ A
Sbjct: 262 -------NLFVKNLPKGTDDDQLKGLFGKFGEIESVTVQRDEQGNLKDYGYVCFKEPDHA 314
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
A+ EMN K I + L V K++ Q S++ P+
Sbjct: 315 EAAVLEMNKKQIDDQFLIVNQHISKKDNEP---TQGSRLNPIT 354
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 10/212 (4%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 62
I K++ + +K RE +TKFNN+FVKNL + T D+ LK +FG++G I S V R
Sbjct: 236 IKGKKIEINRHEKKATRENPQ-QTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIESVTVQR 294
Query: 63 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
D G K +G+V F+ D A AV +N K+ DD+ V + K + E +G +
Sbjct: 295 DEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNE-PTQGSRLNPI 353
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGTITSCKVMRDPSGISKGS------G 175
+ ++K N+YIK + + + +E+L++ FS + I S K+ + I
Sbjct: 354 TQNLNKTFNSNIYIKFIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIEDQEVQPYQFA 413
Query: 176 FVAFSTPEEASRALAEMNGKMIV-SKPLYVAV 206
++ + T A +A+ + + +KPL V +
Sbjct: 414 YILYDTVLGAQKAIQTFDQSTVFGNKPLLVEL 445
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 25 KTKFNNVFVKNL-DESTTDEDLKKIFGEYG--TITSAVVMRDGDGKSKCFGFVNFENADD 81
K KF +++V NL E+ D D K+F +G ++ VV+ K +G++ F + ++
Sbjct: 79 KNKFPSLYVSNLPKENFFDLDFFKLFTSHGFRLKSAKVVLHKRTSKPLGYGYLQFNSKEE 138
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ---GLNLYIKN 138
A + ++ +N YV L GQ + + +V KF NL +KN
Sbjct: 139 ADRCLQDMNN--------YV------------LNGQALRIV-HSVSKFDYNPKANLLVKN 177
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L + ++L + F +FG I S K+ P G S+G F+ F + EEA +AL MN I
Sbjct: 178 LDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNAMNQAEIK 237
Query: 199 SKPLYVAVAQRKEERRARLQAQFSQM 224
K + + ++K R Q +F+ +
Sbjct: 238 GKKIEINRHEKKATRENPQQTKFNNL 263
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 11/196 (5%)
Query: 13 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 72
++ +R+ +++ ++F+KNL+ S + L F +G I S V D +G+SK G
Sbjct: 83 YIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVATDLNGQSKGIG 142
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 132
FV+F+ + A A+E +NG+ ++R+ +VGK + +R F Q V
Sbjct: 143 FVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHT---GFNQHYTNVV------ 193
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
++KN G+ DE L F +FG+I + VM+D G+SK GFV+F + E AS A+ +
Sbjct: 194 --FVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAV 251
Query: 193 NGKMIVSKPLYVAVAQ 208
+ ++ + +Y + A
Sbjct: 252 HSSIVNGRQVYCSRAH 267
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNV-FVKNLDESTTDEDLKKIFGEYGTITSAVV 60
L+N+++V VG F+ +++R + NV FVKN E TDE L F ++G+I +AVV
Sbjct: 163 LLNNRKVHVGKFIPRKDRSHTGFNQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVV 222
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105
M+D +G SK FGFV+FE+ + A+ AV+A++ + R+ Y +A
Sbjct: 223 MKDNEGVSKDFGFVSFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 88
+++V +L + DL F + G + S V RD K S + ++ F+ DA +A +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + Y+ +Q+ + G ++IKNL SID + L
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSRAGH----------------IFIKNLERSIDHKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D +G SKG GFV F E A A+ ++NG+++ ++ ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVG--- 172
Query: 209 RKEERRARLQAQFSQ 223
+ R+ R F+Q
Sbjct: 173 KFIPRKDRSHTGFNQ 187
>gi|344246646|gb|EGW02750.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 127
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 2/125 (1%)
Query: 7 QVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 64
+VFVG F ++ERE A F N+++KN E DE LK +FG++G + VM D
Sbjct: 3 EVFVGRFKSRKEREAELGARAKDFTNIYIKNFGEDMDDERLKDLFGKFGPALNVKVMTDE 62
Query: 65 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 124
GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK E++ ELK +FEQ ++
Sbjct: 63 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKMEQQTELKRKFEQMKQD 122
Query: 125 TVDKF 129
+ ++
Sbjct: 123 RITRY 127
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 80/128 (62%), Gaps = 10/128 (7%)
Query: 98 EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT 157
E +VG+ + + ERE EL + + N+YIKN G+ +DDE+LK+LF +FG
Sbjct: 3 EVFVGRFKSRKEREAELGARAKDFT----------NIYIKNFGEDMDDERLKDLFGKFGP 52
Query: 158 ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217
+ KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K E++ L
Sbjct: 53 ALNVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKMEQQTEL 112
Query: 218 QAQFSQMR 225
+ +F QM+
Sbjct: 113 KRKFEQMK 120
>gi|345571041|gb|EGX53856.1| hypothetical protein AOL_s00004g515 [Arthrobotrys oligospora ATCC
24927]
Length = 496
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD TD+ L++IF G + S ++ D + K +GFV +++ A +A++ LN
Sbjct: 80 LYVGGLDPRVTDDILRQIFETTGHVVSVKIIPDKNAKGFNYGFVEYDDPGAAERAMQTLN 139
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + S QA KE D ++++ +L + ++DE L++
Sbjct: 140 GRRVHQSEIRVNWAYQSS-----------QAAKE--DTSHHFHIFVGDLSNEVNDELLQQ 186
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FGTI+ +VM D +G S+G GFVA+ +A +AL+ M+G+ + S+ + A +
Sbjct: 187 AFTTFGTISEARVMWDMKTGRSRGYGFVAYRERSDAEKALSAMDGEWLGSRAIRCNWANQ 246
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + Q+Q +QM M P+ P
Sbjct: 247 KGQPSISQQSQMAQM---GMTPTTP 268
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L++ F +GTI+ A VM D G+S+ +GFV + DA KA+ A
Sbjct: 169 HIFVGDLSNEVNDELLQQAFTTFGTISEARVMWDMKTGRSRGYGFVAYRERSDAEKALSA 228
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF-------QGL--------- 132
++G+ R A +K + + Q Q F G+
Sbjct: 229 MDGEWLGSRAIRCNWANQKGQPSISQQSQMAQMGMTPTTPFGHHHFPTHGIQSYDMIVQQ 288
Query: 133 ------NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
+Y+ NL L LF FG I + D +G F+ T E A+
Sbjct: 289 TPQWQTTVYVGNLTPYTTQNDLLPLFQNFGYIVETRFQAD-----RGFAFIKMDTHENAA 343
Query: 187 RALAEMNGKMIVSKPLYVAVAQRK 210
A+ +++G + +PL + + +
Sbjct: 344 MAICQLSGYNVNGRPLKCSWGKDR 367
>gi|414884858|tpg|DAA60872.1| TPA: putative AP2/EREBP transcription factor superfamily protein
[Zea mays]
Length = 1012
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 65/80 (81%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 86
KF+NV+VKNL ++ T+++LK++F +YGTITS VVMRD G S+CF FV FEN + AA+AV
Sbjct: 273 KFSNVYVKNLSDTVTNDELKEMFEKYGTITSDVVMRDNVGNSRCFAFVIFENVEVAAQAV 332
Query: 87 EALNGKKFDDREWYVGKAQK 106
+ LNGK F+D+E YVG+ Q+
Sbjct: 333 QELNGKIFNDKELYVGRVQQ 352
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 10/103 (9%)
Query: 117 QFEQAMKETVDKFQGL----------NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+ +++ + +DK GL N+Y+KNL D++ +++LKE+F ++GTITS VMRD
Sbjct: 250 EMDESAQSAIDKLYGLENAWNSIKFSNVYVKNLSDTVTNDELKEMFEKYGTITSDVVMRD 309
Query: 167 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
G S+ FV F E A++A+ E+NGK+ K LYV Q+
Sbjct: 310 NVGNSRCFAFVIFENVEVAAQAVQELNGKIFNDKELYVGRVQQ 352
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ N+FVKNLDE+ ++ L F +G I S V D G+SK +G+V++E
Sbjct: 119 QRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A A+ +NG ++ +VG ++ R GQ + NLY+K
Sbjct: 179 GGVSANMAIAKINGMLIAGKQVHVGHFVRRDNR----AGQADWT-----------NLYVK 223
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDP---------------SGISKGSGFVAFSTP 182
L S DD KL+E F + G +TSCKV P G S+G GFV F
Sbjct: 224 GLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEH 283
Query: 183 EEASRALAEMNGKMI----VSKPLYVAVAQRKEERRARLQAQFSQMR 225
E A +A+ +N + + LY A AQ+K ER LQ++ Q++
Sbjct: 284 ESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVK 330
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + + L +IF + G + S V RD +S + +VNF N DA +A++
Sbjct: 43 SLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDT 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N D+ + +Q+ + G N+++KNL +++D++ L
Sbjct: 103 MNFTTIKDQACRIMWSQRDPSLRRSGVG----------------NIFVKNLDETVDNKAL 146
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D +G SKG G+V + A+ A+A++NG +I K ++V
Sbjct: 147 YDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFV 206
Query: 209 RKEER 213
R++ R
Sbjct: 207 RRDNR 211
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
+Q+ ++GE LYPL+ + + A K+TGMLLEMD E+LHLLESP++L AK+ EA++VL
Sbjct: 623 KQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQVLSE 682
Query: 449 VAQQQANN 456
QQ NN
Sbjct: 683 --HQQENN 688
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
+ +LY+ +L + + L E+FS+ G + S +V RD + S G +V F +A R
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL MN I + + +QR
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQR 120
>gi|403339745|gb|EJY69134.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 593
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 68/450 (15%)
Query: 24 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR---DGDGKSKCFGFVNFENAD 80
++ FNN+++KN + E +++IFG+YGTI S VVM G + F FV +E+ D
Sbjct: 185 LRKTFNNIYIKNFPSNWNKEKIEEIFGQYGTIKSTVVMMGKVQGTDQEAPFAFVCYEDPD 244
Query: 81 D-------AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
+ A A+ N K++D + V +A KS REQE K + + +K + + N
Sbjct: 245 NKEYGPKCAQNAITQENDKEYDGFKLQVKEALPKSLREQE-KQREQNRLKNSKKR---CN 300
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
LY+KN ++ ++E+LK F ++G I K++ FV + PE A+ A +
Sbjct: 301 LYVKNFPENTNEEQLKAYFEKYGEIERIKLIHKEGAAV--YAFVCYKNPESATYAKQQSQ 358
Query: 194 GKMIVSKPLYVAVAQRKEERR-----ARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG 248
+ + K L++ ++KE R+ AR + F +R + ++ M P
Sbjct: 359 TQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLRKQSPTSALNIDMLNRP------- 411
Query: 249 QQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR--- 305
F Q L+ ++ QG Q+ G R+
Sbjct: 412 ----------------ETFQLLQYLMITIQRQQQNQRY--NNPQRQGGNMQQRGPRQQYN 453
Query: 306 GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV----PVDMGAG 361
G QQ Q LP QMPP R P P M + M + P M
Sbjct: 454 NQGGYQQRNQQLP--QGQMPPMNQQMRQPQQ------PVIMPSQVMPALAQVAPSAMNQN 505
Query: 362 IPRRDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLE-RDAAAKVTGMLL 418
+P + Q I L +AL +P ++ +GE +Y VE+L D A K+TGML+
Sbjct: 506 LPPHILTYNQNGMSKIFPLVSAL---NPN-YKSQVGEFIYEHVEELAGEDLAPKITGMLI 561
Query: 419 EMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
++ E+ + LK K+ EA +L+S
Sbjct: 562 DLPIVEIQAYVTDFMKLKIKINEASTLLKS 591
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 41/186 (22%)
Query: 27 KFNNVFVKNLDESTT----DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 82
K N + VKNLD+S T DE K+FG+ + SA V + D S+ +GFV F A
Sbjct: 102 KTNFLLVKNLDKSITSQQLDEIFAKVFGD-DAVLSAKVSINSDYSSRGYGFVQFACPQLA 160
Query: 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 142
+A+ + F+ + RE EL+ F N+YIKN +
Sbjct: 161 EQALAKASEFNFE------ISTHQPMNRE-ELRKTFN-------------NIYIKNFPSN 200
Query: 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGS------GFVAFSTPEE-------ASRAL 189
+ EK++E+F ++GTI S VM G +G+ FV + P+ A A+
Sbjct: 201 WNKEKIEEIFGQYGTIKSTVVM---MGKVQGTDQEAPFAFVCYEDPDNKEYGPKCAQNAI 257
Query: 190 AEMNGK 195
+ N K
Sbjct: 258 TQENDK 263
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 134 LYIKNLGDSIDDEKLKELFSE-FG--TITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
L +KNL SI ++L E+F++ FG + S KV + S+G GFV F+ P+ A +ALA
Sbjct: 106 LLVKNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDYSSRGYGFVQFACPQLAEQALA 165
Query: 191 ---EMNGKMIVSKPL 202
E N ++ +P+
Sbjct: 166 KASEFNFEISTHQPM 180
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 14 LRKQE--RETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKS 68
LR+QE RE +K K N++VKN E+T +E LK F +YG I ++ ++G +
Sbjct: 280 LREQEKQREQNRLKNSKKRCNLYVKNFPENTNEEQLKAYFEKYGEIERIKLIHKEG---A 336
Query: 69 KCFGFVNFENADDAAKA-----VEALNGKKF 94
+ FV ++N + A A + LNGK+
Sbjct: 337 AVYAFVCYKNPESATYAKQQSQTQTLNGKQL 367
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 19/270 (7%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79
E+ + T F N F+KN S +++L + +YG +TS DGK K F F NFE
Sbjct: 182 ESKKVSTMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETH 241
Query: 80 DDAAKAVEALNGK-KFDDRE-----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN 133
+ A A+ L+G FD+ + +Y+ K QK+ ER + L+ FEQ + + + N
Sbjct: 242 ESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKK--N 299
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
LYI N+ + E+L +F EFG+ITS V D + K ++ +STPEEAS A+ N
Sbjct: 300 LYITNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGN 359
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 253
+ L VA + K ER + + P +P MY G S F
Sbjct: 360 EIYLDGNRLQVAYFKNKLERMKE-----KEFGGLGYKPGIP---YMYNQGASFASNGFKR 411
Query: 254 GQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
++ + P +G + + + + A AP
Sbjct: 412 ERSRSGSVKP---YGNELEKLHSLVLAAAP 438
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V +L T D DL +IF G I + +++ G+ + F FV FEN +DA KAV
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGES-APSFAFVTFENEEDAEKAVREYK 74
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
+ DR+ V +K ER E N+++KNL +S + L +
Sbjct: 75 HYELHDRQIRV---MRKDERPPETG-----------------NIFVKNLPESFTSKDLDD 114
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
FS FG I SCKV P G SKG GFV F A + + N
Sbjct: 115 AFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFN 157
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 105/235 (44%), Gaps = 36/235 (15%)
Query: 3 INDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
++D+Q+ V +RK ER ET N+FVKNL ES T +DL F +G I S V
Sbjct: 78 LHDRQIRV---MRKDERPPET-------GNIFVKNLPESFTSKDLDDAFSMFGEIVSCKV 127
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEA---LNGKKFDDREWYVG--KAQKKSEREQELK 115
GKSK +GFV F+ A K ++ LNG + V + K +++
Sbjct: 128 ATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVS 187
Query: 116 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
F N +IKN S+ +++L +L ++G +TS G KG
Sbjct: 188 TMF-------------TNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFA 234
Query: 176 FVAFSTPEEASRALAEMNGKMIVS------KPLYVAVAQRKEERRARLQAQFSQM 224
F F T E A A+ ++G +P Y+ Q++EER L+ F Q+
Sbjct: 235 FANFETHESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQL 289
>gi|425856436|gb|AFX97758.1| poly(A)-binding protein, partial [Galium verum f. pusillum]
Length = 65
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%), Gaps = 2/67 (2%)
Query: 406 ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLS 465
E D AAKVTGMLLEMDQTEVLHLLESPEALK+KVAEAMEVLR+V QQ +NPADQLA+LS
Sbjct: 1 EPDTAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMEVLRNV--QQGSNPADQLAALS 58
Query: 466 LNENLVS 472
LN+ LVS
Sbjct: 59 LNDGLVS 65
>gi|403355493|gb|EJY77324.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 590
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 120/460 (26%), Positives = 194/460 (42%), Gaps = 74/460 (16%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR---DGDGKSKCFGF 73
Q ++ ++ FNN+++ N + E +++IFG+YGTI S V+ G + F F
Sbjct: 175 QPKDRRELRKTFNNIYINNFPSNWNKEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAF 234
Query: 74 VNFENADD-------AAKAVEALNGKKFDDREWYVGKAQKKSEREQELK---GQFEQAMK 123
V +E+ D+ A A+ N K++D + YV +A K+ REQE K +F+ + K
Sbjct: 235 VCYEDKDNKEYGPKCALNAINQENDKEYDGIKLYVKEALPKTLREQEKKREQNRFKNSKK 294
Query: 124 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
NLY+KN ++ +E+LK F ++G I S K+ FV + PE
Sbjct: 295 RC-------NLYVKNFPENTTEEQLKAYFEKYGEIESIKLNHKEGAAV--YAFVCYKNPE 345
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERR-----ARLQAQFSQMRPVAMGPSVPPRMP 238
A+ A + + + K L++ ++KE R+ AR + F +R + ++ M
Sbjct: 346 SATYAKQQSQTQTLNGKQLFLNFYEQKEVRKIQQEDARDRTDFQNLRKQSPTSALNIDML 405
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
P F Q L+ ++ QG
Sbjct: 406 NRP-----------------------ETFQLLQYLMITIQRQQQNQRY--NNPQRQGGNM 440
Query: 299 QRPGGRR---GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV- 354
Q+ G R+ G QQ Q LP QMPP R P P M + M +
Sbjct: 441 QQRGPRQQYNNQGGYQQRNQQLP--QGQMPPMNQQMRQPQQ------PVIMPSQVMPALA 492
Query: 355 ---PVDMGAGIPRRDASVGQP--MPITALSTALANASPEQQRTLLGESLYPLVEQLE-RD 408
P M +P + Q I L +AL +P ++ +GE +Y VE+L D
Sbjct: 493 QVAPSAMNQNLPPHILTYNQNGMSKIFPLVSAL---NPN-YKSQVGEFIYEHVEELAGED 548
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGML+++ E+ + LK K+ EA +L+S
Sbjct: 549 LAPKITGMLIDLPIVEIQAYVTDFMKLKIKINEASTLLKS 588
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 38/210 (18%)
Query: 29 NNVFVKNLDESTT----DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
NN+ V+NLD+S T DE K+FG+ + SA V + D S+ +GFV F A +
Sbjct: 101 NNLKVQNLDKSITSQQLDEIFAKVFGD-DAVLSAKVSINSDYSSRGYGFVLFACPQLAEQ 159
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ + F+ + Q K RE +++T + N+YI N + +
Sbjct: 160 ALAKASEFNFE-----ISPHQPKDRRE----------LRKTFN-----NIYINNFPSNWN 199
Query: 145 DEKLKELFSEFGTITSCKV-MRDPSGISKGS--GFVAFST-------PEEASRALAEMNG 194
EK++++F ++GTI S + M G + + FV + P+ A A+ + N
Sbjct: 200 KEKIEQIFGQYGTIKSTVIKMGKVQGTDQEAPFAFVCYEDKDNKEYGPKCALNAINQEND 259
Query: 195 KMIVSKPLYVAVA---QRKEERRARLQAQF 221
K LYV A +E+ + R Q +F
Sbjct: 260 KEYDGIKLYVKEALPKTLREQEKKREQNRF 289
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 74
+K+E+ K N++VKN E+TT+E LK F +YG I S + + +G + + FV
Sbjct: 282 KKREQNRFKNSKKRCNLYVKNFPENTTEEQLKAYFEKYGEIES-IKLNHKEG-AAVYAFV 339
Query: 75 NFENADDAAKA-----VEALNGKKF 94
++N + A A + LNGK+
Sbjct: 340 CYKNPESATYAKQQSQTQTLNGKQL 364
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 113 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE-FG--TITSCKVMRDPSG 169
+LK +FE E Q NL ++NL SI ++L E+F++ FG + S KV +
Sbjct: 85 DLKKEFETLGNEMG---QRNNLKVQNLDKSITSQQLDEIFAKVFGDDAVLSAKVSINSDY 141
Query: 170 ISKGSGFVAFSTPEEASRALAE 191
S+G GFV F+ P+ A +ALA+
Sbjct: 142 SSRGYGFVLFACPQLAEQALAK 163
>gi|147801504|emb|CAN61506.1| hypothetical protein VITISV_011738 [Vitis vinifera]
Length = 433
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 328 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP 387
G AY YP NM D P AG ML +P DMG + RDA QP+ I+ L++ A+ +
Sbjct: 328 GRAYLYPHSLNMLDSPMPGVAGGMLSIPYDMGDML-LRDAXFXQPILISXLASTHASVAS 386
Query: 388 EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEA 434
+QQRT+LGESLYPL++QLE + A KV G LE+DQTE LHL ES E
Sbjct: 387 DQQRTMLGESLYPLLDQLENEMAVKVIGPFLEVDQTEGLHLFESLEV 433
>gi|157114958|ref|XP_001652505.1| RNA-binding protein precursor, putative [Aedes aegypti]
gi|108877135|gb|EAT41360.1| AAEL007013-PA [Aedes aegypti]
Length = 122
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS- 186
K + NL++KNL +IDD +L+ELFS FGT+TS K+ R+ +G SK GFV + EA+
Sbjct: 9 KTESANLFVKNLVATIDDNRLRELFSPFGTVTSAKIARNDAGESKKHGFVCYGADSEAAL 68
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVA 228
+A+ MNG++I KP+YV VAQ++EER L AQFS+ + V+
Sbjct: 69 KAIFYMNGRLIAGKPIYVNVAQKREERSKLLAAQFSKSKDVS 110
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF-ENADD 81
A KT+ N+FVKNL + D L+++F +GT+TSA + R+ G+SK GFV + +++
Sbjct: 7 AKKTESANLFVKNLVATIDDNRLRELFSPFGTVTSAKIARNDAGESKKHGFVCYGADSEA 66
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
A KA+ +NG+ + YV AQK+ ER + L QF ++
Sbjct: 67 ALKAIFYMNGRLIAGKPIYVNVAQKREERSKLLAAQFSKS 106
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 11/184 (5%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVM---RDGDGKSKCFGFVNFENADDAAKAVE 87
++V NLD+ TD L +IF G + S ++ + + + +GFV F + A +A++
Sbjct: 20 IYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAIQ 79
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NG+K + E AQ + L Q KE D ++++ +L I+DEK
Sbjct: 80 DMNGRKIFNYEIRANWAQPSANINPPL-----QMTKE--DTTNHFHVFVGDLAAEINDEK 132
Query: 148 LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L + FSEFGT++ VM DP SG S+G GFVAF +A RA+A MNG+ + ++P+
Sbjct: 133 LAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNW 192
Query: 207 AQRK 210
A +K
Sbjct: 193 ATQK 196
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAK 84
T +VFV +L DE L + F E+GT++ A VM D GKS+ FGFV F + DA +
Sbjct: 114 TNHFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAER 173
Query: 85 AVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQ---FEQAMKETVDKFQGLNLYIK 137
A+ +NG+ R W K Q Q GQ +E +++T ++Y+
Sbjct: 174 AIATMNGEWLGTRPIRCNWATQKGQTAMPAPQ--PGQQLPYEVVVQQTPAYV--TSIYVG 229
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ ++ L + F FG + K D +G FV T E A+ A+ + I
Sbjct: 230 NIPLNVSQNDLVQPFQRFGYVQEVKFQAD-----RGFAFVKMDTHENAANAIVHLQNMSI 284
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
+ ++ G PP P + G QQ YG+
Sbjct: 285 NGN-----------------------VTKLSWGKDRPP--PGWQNYNGGFQQQVQYGRRQ 319
Query: 258 PAIIPPQAGFGYQQQLVPG 276
P FG Q+QL G
Sbjct: 320 PN---NNNAFGVQRQLANG 335
>gi|403368329|gb|EJY83994.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1042
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 22 VAIKTKFNNVFVKNL-DESTTDEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFEN 78
V K +FNN+FVK D + T E L ++F YG I SAV+M+ D ++ +GFV FE+
Sbjct: 381 VTSKNQFNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSGYGFVCFED 440
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
++ A +A E ++ K YV +A KK +R +E+K + + K+++ KF NLY+KN
Sbjct: 441 SEGARRACENMHTKD----GLYVKRALKKQQRLEEVK-RLSEKYKKSMQKF---NLYVKN 492
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMR----------------DPSGI-----SKGSGFV 177
+ +LKE F FG + + K+MR D + + S G GFV
Sbjct: 493 FPLETTETELKEYFQRFGDVNNVKIMRKSKPQTQRSDDQIQKEDDNKLEQLPESLGFGFV 552
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL-----QAQFSQMRPVAMG 230
++++ E A++A E ++ + L V + K R A L + QF + R +G
Sbjct: 553 SYTSAESAAKAKLEAKTQLFKDRLLIVCQYESKAVREAHLAEARDKRQFERYRKSLIG 610
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
L+IK + E F FG I S KV +S+G GFV F+ E+A + +
Sbjct: 241 LFIKGFSKQWTHKDFYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQICD 300
Query: 194 GKMIV 198
GK+I+
Sbjct: 301 GKVIL 305
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+F+K + T +D + F +G I SA V S+ +GFV F + A ++ +
Sbjct: 241 LFIKGFSKQWTHKDFYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQICD 300
Query: 91 GK 92
GK
Sbjct: 301 GK 302
>gi|328875992|gb|EGG24356.1| RNA recognition motif-containing protein RRM [Dictyostelium
fasciculatum]
Length = 770
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 17/209 (8%)
Query: 12 HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 71
H+ + + +I+ NVFVK L D +L +F ++G + SA VM D G S +
Sbjct: 71 HYGDQGDDYESSIEKDQTNVFVKYLPNEFGDSELHNLFTQFGKVMSAKVMVDPKGNSYGY 130
Query: 72 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 131
GFV F + ++ A+E ++GK+ ++L + K+
Sbjct: 131 GFVRFSSPIESKLAIETMDGKQL---------------MHKKLLCRLSYLYSNHNSKYPS 175
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
NL++K L ++ D +L++LF FG I CKVM D G SK +GFV F +A++A+
Sbjct: 176 NNLFVKPLPATLTDGQLRDLFQGFGEIVECKVMVDKKGNSKLAGFVRFDNEADATKAIQA 235
Query: 192 MNGKMI--VSKPLYVAVAQRKEERRARLQ 218
MNG + S PL V A + ++ R Q
Sbjct: 236 MNGAKMGADSTPLVVKYADNEHQKSLRKQ 264
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+++K L + D +L LF++FG + S KVM DP G S G GFV FS+P E+ A+ M
Sbjct: 89 NVFVKYLPNEFGDSELHNLFTQFGKVMSAKVMVDPKGNSYGYGFVRFSSPIESKLAIETM 148
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 227
+GK ++ K L ++ ++ + ++P+
Sbjct: 149 DGKQLMHKKLLCRLSYLYSNHNSKYPSNNLFVKPL 183
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
NL++ +L +DD L +LFS++G + S +V+ D +G +KG GFV F ++A +L +
Sbjct: 629 NLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSLNQ 688
Query: 192 MNGKMIVSKPLYV 204
MNG + K L V
Sbjct: 689 MNGMQVGQKYLKV 701
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+FV +L D L K+F +YG + S V+ D + G++K +GFV F+N DDA ++
Sbjct: 629 NLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSLNQ 688
Query: 89 LNG 91
+NG
Sbjct: 689 MNG 691
>gi|403370981|gb|EJY85363.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1042
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 22 VAIKTKFNNVFVKNL-DESTTDEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFEN 78
V K +FNN+FVK D + T E L ++F YG I SAV+M+ D ++ +GFV FE+
Sbjct: 381 VTSKNQFNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSGYGFVCFED 440
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
++ A +A E ++ K YV +A KK +R +E+K + + K+++ KF NLY+KN
Sbjct: 441 SEGARRACENMHTKD----GLYVKRALKKQQRLEEVK-RLSEKYKKSMQKF---NLYVKN 492
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMR----------------DPSGI-----SKGSGFV 177
+ +LKE F FG + + K+MR D + + S G GFV
Sbjct: 493 FPLETTEAELKEYFQRFGDVNNVKIMRKSKPQTQKSDDQVQKEDDNKLEQLPESLGFGFV 552
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL-----QAQFSQMRPVAMG 230
++++ E A++A E ++ + L V + K R A L + QF + R +G
Sbjct: 553 SYTSAESAAKAKLEAKTQLFKDRLLIVCQYESKAVREAHLAEARDKRQFERYRKSLIG 610
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 93/232 (40%), Gaps = 53/232 (22%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+F+K + T +D + F +G I SA V S+ +GFV F + A ++ +
Sbjct: 241 LFIKGFSKQWTHKDFYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQICD 300
Query: 91 GK----------------------------------KFDDREWYVGKAQKKSERE-QELK 115
GK FDD + Q KS++ Q LK
Sbjct: 301 GKVILPLDSQKPHQAQLVDPSSVNLEQLEKPDDEISAFDDSKDQPSSKQNKSKKAMQPLK 360
Query: 116 GQ-FEQAMK----------ETVDKFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKV 163
+ +A K K Q NL++K D +I E+L E+FS +G I S +
Sbjct: 361 ILPYVKAEKGANTGGSLGLGVTSKNQFNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVM 420
Query: 164 MR--DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
M+ D + G GFV F E A RA M+ K LYV A +K++R
Sbjct: 421 MKKQDNPDENSGYGFVCFEDSEGARRACENMHTK----DGLYVKRALKKQQR 468
>gi|403221974|dbj|BAM40106.1| splicing factor 3b subunit 4 [Theileria orientalis strain Shintoku]
Length = 326
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
+++ NLD +E L + F + G + S + RD G+ + FGFV +E DA A+ L
Sbjct: 20 LYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDADYALRIL 79
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + + KA K E + G NL+I N+ D +D++ L
Sbjct: 80 NFIKLYHKPLRLNKASKDKENTE-----------------IGANLFIGNIDDEVDEKLLH 122
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FGT+ K++RD + + FV+F E + ALA MNG+ + +KP++V+ A +
Sbjct: 123 DTFSAFGTVVFTKIVRDEANSGRSYAFVSFDNFESSDAALASMNGQFLCNKPIHVSYAYK 182
Query: 210 KEERRAR 216
K+ + R
Sbjct: 183 KDTKGER 189
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+ N+D+ ++ L F +GT+ ++RD + + FV+F+N + + A+ ++
Sbjct: 106 NLFIGNIDDEVDEKLLHDTFSAFGTVVFTKIVRDEANSGRSYAFVSFDNFESSDAALASM 165
Query: 90 NGKKFDDREWYVGKAQKKSER 110
NG+ ++ +V A KK +
Sbjct: 166 NGQFLCNKPIHVSYAYKKDTK 186
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
D+ Q LYI NL D+E L E F + G + S + RD +G +G GFV + T +A
Sbjct: 13 DRNQEATLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETETDA 72
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEER 213
AL +N + KPL + A + +E
Sbjct: 73 DYALRILNFIKLYHKPLRLNKASKDKEN 100
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V NLD + T+E L ++F + G + + V +D + +GFV F N +DA A++ L
Sbjct: 10 IYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIKVL 69
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA + + G NL++ NL +D++ L
Sbjct: 70 NMIKLHGKPVRVNKASQDKKSND-----------------VGANLFVGNLDSELDEKLLY 112
Query: 150 ELFSEFGT-ITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG IT+ K+MRDP SG S+G GFV++ + E A A+ MNG+ + ++P+ V A
Sbjct: 113 DTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIEAMNGQFLCNRPISVTFA 172
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSVPPRMP--MYPPGPS 245
+K+ R R +M M SV P M+ GP+
Sbjct: 173 YKKDTRGERHGTPAERMLAANMERSVATHRPHTMFSAGPA 212
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+FV NLD ++ L F +G IT+ +MRD D G S+ FGFV++++ + A A+E
Sbjct: 96 NLFVGNLDSELDEKLLYDTFSAFGVVITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIE 155
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK R
Sbjct: 156 AMNGQFLCNRPISVTFAYKKDTR 178
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
D+ Q +Y+ NL + +E L E+F + G + + V +D S +G GFV F+ E+A
Sbjct: 3 DRNQDATIYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDA 62
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEE 212
A+ +N + KP+ V A + ++
Sbjct: 63 DYAIKVLNMIKLHGKPVRVNKASQDKK 89
>gi|384490634|gb|EIE81856.1| hypothetical protein RO3G_06561 [Rhizopus delemar RA 99-880]
Length = 420
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 23/221 (10%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
+N++V+ L + TD ++ YGT++S+ + D G+ K +GF FEN D +A+E
Sbjct: 190 HNIYVRGLPSTITDGAFLEMCQAYGTVSSSKAIIDQKLGECKGYGFAMFENEKDCEEAIE 249
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN F VG ++ + ET N+YI NL I +EK
Sbjct: 250 GLNKSGFQASYAKVG--------QESFSSRLRHLQDET-----STNIYISNLPLDITEEK 296
Query: 148 LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYV 204
L+ LFS + TI+S +++RDP SGIS+G GF + E AS + + NG +I S PL V
Sbjct: 297 LEVLFSPYQTISS-RILRDPQSGISRGVGFARMTDREAASAIIEKFNGYVIEGSSAPLQV 355
Query: 205 ----AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
+ AQ+K + ++ + + + +P+A G SV P MP+ P
Sbjct: 356 RFADSPAQKKLKNQSATRRRVVRHQPLA-GFSVRPLMPITP 395
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 160
A + ++R + + Q ++ ++ + N+Y++ L +I D E+ +GT++S
Sbjct: 159 TADANRNNKRRPKQDQELNQHLEPEINSYHTHNIYVRGLPSTITDGAFLEMCQAYGTVSS 218
Query: 161 CKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
K + D G KG GF F ++ A+ +N + Y V Q R R
Sbjct: 219 SKAIIDQKLGECKGYGFAMFENEKDCEEAIEGLNKSGFQAS--YAKVGQESFSSRLR 273
>gi|402697279|gb|AFQ90827.1| polyA-binding protein cytoplasmic 1, partial [Chrysemys picta]
Length = 127
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 11/138 (7%)
Query: 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 113
I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE E
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 114 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 173
L + ++ N+YIKN G+ +DDE+LKELF S KVM D SG SKG
Sbjct: 60 LGARAKEFT----------NVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKG 109
Query: 174 SGFVAFSTPEEASRALAE 191
GFV+F E+A +A+AE
Sbjct: 110 FGFVSFERHEDAQKAVAE 127
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG S
Sbjct: 38 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSV 97
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAV 86
VM D GKSK FGFV+FE +DA KAV
Sbjct: 98 KVMTDESGKSKGFGFVSFERHEDAQKAV 125
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 157 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
I S KV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V + ++ER A
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 217 LQAQFSQMRPVAM 229
L A+ + V +
Sbjct: 60 LGARAKEFTNVYI 72
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 113/205 (55%), Gaps = 23/205 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++ NLD+ TD+ + ++F + G + + + +D G+ + +GFV F++ +DA A++
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
++ K + V KA + +R QE+ G NL+I NL ID++ L
Sbjct: 80 MHMIKLYGKPIKVNKASQ-DKRTQEV----------------GANLFIGNLDTEIDEKTL 122
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
E FS FG I S K+MR+P +G+SKG GFV++ E + AL MNG+ + +K + V A
Sbjct: 123 YETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYA 182
Query: 208 QRKEERRARLQAQFSQM----RPVA 228
+K+ + R +Q ++ RP+A
Sbjct: 183 FKKDAKGERHGSQAERLLAANRPLA 207
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 188
Q +YI NL + D+ + ELF + G + + + +D SG +G GFV F + E+A A
Sbjct: 17 QEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYA 76
Query: 189 LAEMNGKMIVSKPLYVAVA---QRKEERRARL 217
+ M+ + KP+ V A +R +E A L
Sbjct: 77 IKIMHMIKLYGKPIKVNKASQDKRTQEVGANL 108
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 21/185 (11%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV NLD + TDE L +F + G +T A V DG + F F+ F + + A +A++A+N
Sbjct: 39 LFVGNLDPAITDEFLATLFNQIGAVTKAKVCFDG--MNDPFAFIEFGDHNQAGQALQAMN 96
Query: 91 GKKFDDRE----WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
G+ DRE W V +Q R+QE F ++++ +L +D
Sbjct: 97 GRSLLDREMRVNWAVDASQPGDSRKQETSRHF--------------HVFVGDLSSEVDST 142
Query: 147 KLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
KL+E F FG ++ K++RD + +KG GFV++ E+A RA+ +MNG+ + + +
Sbjct: 143 KLREAFLAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTN 202
Query: 206 VAQRK 210
A RK
Sbjct: 203 WATRK 207
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 25/196 (12%)
Query: 15 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGF 73
RKQE ++ +VFV +L L++ F +G ++ A ++RD K+K +GF
Sbjct: 120 RKQE------TSRHFHVFVGDLSSEVDSTKLREAFLAFGDVSEAKIIRDTATNKAKGYGF 173
Query: 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKK----------SEREQELKGQFEQAMK 123
V++ +DA +A+E +NG+ R A +K E+ + +E+
Sbjct: 174 VSYPRREDAERAIEQMNGQWLGRRTIRTNWATRKPEEEGGGERRDRGERGERRHYEKTFD 233
Query: 124 ETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
E ++ N +Y+ + +DE ++ F FG I ++ + +G FV F
Sbjct: 234 EIYNQTSADNTSVYVGQINQLTEDE-IRRAFDRFGPINEVRMFK-----VQGYAFVKFEQ 287
Query: 182 PEEASRALAEMNGKMI 197
E A+RA+ +MN I
Sbjct: 288 KEAAARAIVQMNNAEI 303
>gi|384491739|gb|EIE82935.1| hypothetical protein RO3G_07640 [Rhizopus delemar RA 99-880]
Length = 451
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 126/258 (48%), Gaps = 35/258 (13%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
+N++V+ L S TDE ++ EYGT++S+ + D G+ K +GF FE+ + +A+E
Sbjct: 176 HNIYVRGLPSSITDESFLEMCQEYGTVSSSKAIIDQKTGECKGYGFAMFEDEKNCEEAIE 235
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + VG ++ + ET N+YI NL +++EK
Sbjct: 236 GLNKAGYQASYAKVG--------QESFSSRLRHLQDET-----STNIYISNLPLDVNEEK 282
Query: 148 LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYV 204
L+ELF + T++S +++RDP SGIS+G GF S A+ + NG I S PL V
Sbjct: 283 LEELFLPYQTVSS-RILRDPQSGISRGVGFARMSERNAATAIIERFNGHSIEGSSAPLQV 341
Query: 205 ----AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP-------PGPSGLGQQFLY 253
+ AQ+K + ++ + + + +P+A G S+ P MP+ P P PS Y
Sbjct: 342 RFADSPAQKKLKSQSAARRRVVRHQPLA-GFSMRPLMPITPETMLGFAPAPS-----HPY 395
Query: 254 GQAPPAIIPPQAGFGYQQ 271
P II PQ Q
Sbjct: 396 YTEHPHIIHPQYAHHLHQ 413
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEE 184
++ + N+Y++ L SI DE E+ E+GT++S K + D +G KG GF F +
Sbjct: 170 INSYHTHNIYVRGLPSSITDESFLEMCQEYGTVSSSKAIIDQKTGECKGYGFAMFEDEKN 229
Query: 185 ASRALAEMN 193
A+ +N
Sbjct: 230 CEEAIEGLN 238
>gi|296423176|ref|XP_002841131.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637365|emb|CAZ85322.1| unnamed protein product [Tuber melanosporum]
Length = 498
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 110/205 (53%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T+E LK+IF G + + ++ D + K +GF+ +++ A +A++ LN
Sbjct: 88 LYVGGLDPRVTEEILKQIFETTGHVQNVKIIPDKNSKGYNYGFIEYDDPGAAERAMQTLN 147
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + ++ +E +T + F ++++ +L + ++DE L +
Sbjct: 148 GRRIHQAEIRVNWAYQSNQSSKE----------DTTNHF---HIFVGDLSNEVNDEVLMQ 194
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 195 AFSTFGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + QA + M M P+ P
Sbjct: 255 KGQPSISQQAAMAAM---GMTPTTP 276
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 41/241 (17%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAK 84
T ++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + DA K
Sbjct: 173 TNHFHIFVGDLSNEVNDEVLMQAFSTFGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEK 232
Query: 85 AVEALNGKKFDDR----EWYVGKAQKKSEREQELKG-------------------QFEQA 121
A+ +++G+ R W K Q ++ + Q
Sbjct: 233 ALSSMDGEWLGSRAIRCNWANQKGQPSISQQAAMAAMGMTPTTPYGHHNFPTHGVQSYDM 292
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+ + ++Q Y+ NL L LF FG + + D +G FV T
Sbjct: 293 IVQQTPQWQ-TTCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQAD-----RGFAFVKMDT 346
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYP 241
E A+ A+ +++G + +PL + + + QF P P P YP
Sbjct: 347 HENAAMAICQLSGYNVNGRPLKCSWGKDRPPT-----GQFDAYSPQQ------PNTPQYP 395
Query: 242 P 242
P
Sbjct: 396 P 396
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 19/169 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ + + S + ED+KKIFG G +TS ++RD G+S + FVN++N DDA KAV
Sbjct: 11 NLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVRE 70
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NG + ++ V A+ S + + NLYI L + +E++
Sbjct: 71 MNGARLQNKTLKVSFARPSST------------------EIKNANLYISGLPKDMKEEEV 112
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+ LF FG I + KV++D SG +G+GFV F EA A+ ++N K +
Sbjct: 113 EALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTL 161
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 191
NL I + S+ E +K++F G +TSCK++RD +G S G FV + P++A++A+ E
Sbjct: 11 NLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVRE 70
Query: 192 MNGKMIVSKPLYVAVAQ 208
MNG + +K L V+ A+
Sbjct: 71 MNGARLQNKTLKVSFAR 87
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV L + T L K+F YG IT+ + D K +GFVN N ++A A+ LN
Sbjct: 257 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLD-----KGYGFVNMSNYEEACHAICCLN 311
Query: 91 G 91
G
Sbjct: 312 G 312
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 11 GHFLRKQERE-TVAIKT---KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
GH ++ ++ E IKT F NVF KN +TT++ LK+IF G ++S DG
Sbjct: 175 GHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDG 234
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREW----YVGKAQKKSEREQELKGQFEQAM 122
+ FGF N+ENA DA KA++ L+GK + ++ YV +AQ K +R L FE+
Sbjct: 235 GLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLS 294
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST 181
++ NLY+ L + E+++ELFS++G I S V +D K +V FST
Sbjct: 295 MSGLN--YKRNLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFST 352
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
+EAS A+ + N I S + V + K ER
Sbjct: 353 ADEASIAVEKGNEVYIDSVKINVTYFKSKNER 384
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+ +KNL + L F +G I S V ++ GK K FGFV F+N + A KA+
Sbjct: 109 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKAL--- 165
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
KF G A K + E+ K +K F N++ KN + +++LK
Sbjct: 166 ---KFGTEMQMDGHAIKVEKYEKNYK------IKTGSRAFT--NVFFKNFPSTTTEQQLK 214
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYVA 205
E+F G ++S P G +G GF + +A +A+ E++GK I +P YV
Sbjct: 215 EIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQ 274
Query: 206 VAQRKEERRARLQAQFSQM 224
AQ K++R L + F ++
Sbjct: 275 QAQTKQQRLDSLSSAFEKL 293
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 78/176 (44%), Gaps = 26/176 (14%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAV----VMRDGDGKSKCFGFVNFENADDAAKAV 86
V+V +L T + DL KIF G+I + VM + + C+ +V F ++A +AV
Sbjct: 20 VYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEALEAV 79
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LN K D+E V K E + N+ IKNL D +
Sbjct: 80 NKLNFFKVHDKEMRVMLYDK-----------------ERIKSMDRGNIVIKNLSADCDSK 122
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA-----EMNGKMI 197
L + FS FG I SCKV ++ G KG GFV F A +AL +M+G I
Sbjct: 123 TLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAI 178
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N++V L + E+++++F +YG I S V +D + K + +V F AD+A+ AVE
Sbjct: 303 NLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEK 362
Query: 89 LNGKKFDDREWYVGKAQKKSEREQE 113
N D + V + K+EREQ+
Sbjct: 363 GNEVYIDSVKINVTYFKSKNEREQD 387
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 35/227 (15%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK-IFGEYGTITSAVV 60
LI K + V F+ K ER V N VF +N DES T E L++ + +G I S ++
Sbjct: 337 LILGKPINVERFVSKVERYKVE-----NKVFFRNADESITIEILQQELSNRFGEIESCIL 391
Query: 61 MRDGDGKSKCFGFVNFENADDAAKA--------VEALNGK----------KFDDREWYVG 102
D +GKSK G V F+N +DA K + ++G + + + +
Sbjct: 392 KNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITID 451
Query: 103 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 162
+ + K ER F + K+T D L+L+I N+ +SID + +KE F++ GTI K
Sbjct: 452 RIKSKVER-------FTEYRKKTTD----LSLFINNIDESIDRDLIKEEFAKHGTIIGIK 500
Query: 163 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+++D + +KG GF++FS +EA +AL +NG SK + V+ + +
Sbjct: 501 IVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNK 547
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVE 87
++V +L + L ++F + G I S V RD + +S + +VNF N DA +A++
Sbjct: 186 LYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALD 245
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + + + + + G N+++KNL +D+
Sbjct: 246 TLNYTLVHGKPCRIMWSYRDPTKRKTNVG----------------NIFVKNLEKGVDNAM 289
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV + GISKG G+V F T + A +A+ ++NG +I+ KP+ V
Sbjct: 290 LYDTFSSFGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERF 348
Query: 208 QRKEER 213
K ER
Sbjct: 349 VSKVER 354
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 20/176 (11%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
KT N+FVKNL++ + L F +G I S V + G SK +G+V+FE D A K
Sbjct: 270 KTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEK 328
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + V + K ER ++ K ++ +N +SI
Sbjct: 329 AIEKVNGTLILGKPINVERFVSKVER-------YKVENK----------VFFRNADESIT 371
Query: 145 DEKL-KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
E L +EL + FG I SC + D +G SKG G V F E+A + L E +G +I+S
Sbjct: 372 IEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTE-SGALIIS 426
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 3 INDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
IN K + + K ER T KT ++F+ N+DES + +K+ F ++GTI ++
Sbjct: 443 INGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIV 502
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFEQ 120
+D + ++K FGF++F +A KA+++LNG F ++ V + K + + +L G +
Sbjct: 503 QDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGNSTK 562
Query: 121 AMKETV 126
K +
Sbjct: 563 ITKNII 568
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALA 190
LY+ +L +++ L ELFS+ G I S V RD + + S G +V F +A RAL
Sbjct: 186 LYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALD 245
Query: 191 EMNGKMIVSKPLYVAVAQRKEERR 214
+N ++ KP + + R +R
Sbjct: 246 TLNYTLVHGKPCRIMWSYRDPTKR 269
>gi|159476562|ref|XP_001696380.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
gi|158282605|gb|EDP08357.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
Length = 396
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 33/247 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V NLD TT+E + ++F + G + + + +D + +GFV F+ +DA A++ L
Sbjct: 33 VYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNAHQGYGFVEFKGEEDADYAIKVL 92
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA + +R+ ++ G NL+I NL +D++ L
Sbjct: 93 NMVKVYGKAIRVNKA-SQDKRQADV----------------GANLFIGNLDPDVDEKLLY 135
Query: 150 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I + K+MRDP +G S+G GFV++ E + A+ MNG+ + ++ + V+ A
Sbjct: 136 DTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSYDCFEASDAAIEAMNGQYLCNRAITVSYA 195
Query: 208 QRKE---ERRA----RLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAI 260
+K+ ER RL A +QMR A S P ++ GP GQQ GQAPPA
Sbjct: 196 FKKDTKGERHGTPAERLLA--AQMREKAAAQSRPNM--LFAEGPKLKGQQV--GQAPPAP 249
Query: 261 IPPQAGF 267
+ +GF
Sbjct: 250 VMAPSGF 256
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I + +MRD D G S+ FGFV+++ + + A+E
Sbjct: 119 NLFIGNLDPDVDEKLLYDTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSYDCFEASDAAIE 178
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R V A KK +
Sbjct: 179 AMNGQYLCNRAITVSYAFKKDTK 201
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
D+ Q +Y+ NL +E + ELF++ G + + + +D + +G GFV F E+A
Sbjct: 26 DRNQEATVYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNAHQGYGFVEFKGEEDA 85
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
A+ +N + K + V A +++R+A + A
Sbjct: 86 DYAIKVLNMVKVYGKAIRVNKAS-QDKRQADVGANL 120
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+FVKNLD+S + L F +G I S V D G SK +GFV++EN + A +A+E +
Sbjct: 116 NIFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKV 175
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + V +K +RE E + F NLY++N D+E L+
Sbjct: 176 NGMLIGGKRVEVAPFLRKQDRESE-------------EVFT--NLYVRNFPADWDEEALR 220
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVA 207
+ ++G ITS + D G + FV + PE A + +N + S+PL V
Sbjct: 221 QFLEKYGEITSMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPH 278
Query: 208 QRKEERRARLQAQFSQ 223
Q K +R+ L+AQF+
Sbjct: 279 QDKAKRQNLLRAQFNN 294
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 25/190 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V +L T+ L ++F G + S V RD KS + +VN+ + DA +A+E L
Sbjct: 29 LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALENL 88
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD----KFQGLNLYIKNLGDSIDD 145
N Y+ E+KG + M D + N+++KNL SID
Sbjct: 89 N---------YI-----------EIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDT 128
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
+ L + FS FG I SCKV D SG SK GFV + E A A+ ++NG +I K + VA
Sbjct: 129 KSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
Query: 206 VAQRKEERRA 215
RK++R +
Sbjct: 189 PFLRKQDRES 198
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
Q+ ++GE L+P++ + D A K+TGM+LE+D E+L LLE + LKAK+ EA++VL+
Sbjct: 601 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 658
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 42/268 (15%)
Query: 32 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 90
+V NLD ++E L ++F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
K + V KA + K+++D G NL+I NL +D++ L +
Sbjct: 88 MIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGNLDPDVDEKLLYD 130
Query: 151 LFSEFGTI-TSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS FG I T+ K+MRDP +G S+G GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 209 RKEERRARL-----------QAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG----QQFLY 253
+K+ + R + RP + S PP +P P +G+ + F
Sbjct: 191 KKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQA-NGVAPVPPRPFAN 249
Query: 254 GQAPPAI-----IPPQAGFGYQQQLVPG 276
G APPAI PPQA +Q VPG
Sbjct: 250 GVAPPAIPALRPPPPQAA-AFQPMPVPG 276
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I T+ +MRD D G S+ FGF+++++ + + A+E
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R+ V A KK +
Sbjct: 173 AMNGQYLCNRQITVSYAYKKDTK 195
>gi|324507276|gb|ADY43089.1| RNA-binding motif, single-stranded-interacting protein 1 [Ascaris
suum]
Length = 673
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
NV+++ LD +TTDEDL++ +YG I S +M G+ K +GFV+FE+A+ A +AVE
Sbjct: 301 NVYIRGLDPNTTDEDLRQKCDQYGVILSTKAIMDKATGQCKGYGFVDFESAEAAMRAVEG 360
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG-LNLYIKNLGDSIDDEK 147
LN QE K Q + A + Q NLY NL + ++
Sbjct: 361 LN---------------------QEGKVQAQMAKVSIAQQEQDPTNLYFANLPANFTEQD 399
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYV 204
L++ FG + S +++++ G S+G GF E + + EMNGK+I+ ++PL V
Sbjct: 400 LQKTLERFGMVISTRILKNQDGASRGVGFARMDKKELCDQIIREMNGKLIINNSTQPLLV 459
Query: 205 AVAQRKEERRAR 216
A ++ + R
Sbjct: 460 KFADSGKKPKTR 471
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 30/200 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-----GDGKSKC----FGFVNFENAD 80
N+ V L ++ T E+++ +F G + S ++RD G S C +GFVN++ +
Sbjct: 43 NLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYKRPE 102
Query: 81 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140
DA KA+ LNG + ++ V A+ SE +G NLY+ L
Sbjct: 103 DAEKAINTLNGLRLQNKTIKVSYARPSSE------------------SIKGANLYLSGLP 144
Query: 141 DSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKM--I 197
S+ + +L+ LFS G+I +C+++ D +G+SKG GF+ F EA RA+ ++NGK+
Sbjct: 145 KSMSEPELRSLFSSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQLNGKVPEG 204
Query: 198 VSKPLYVAVAQRKEERRARL 217
++P+ V A + +L
Sbjct: 205 ATEPITVKFANAPSSNKNQL 224
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 41/217 (18%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+++ L +S ++ +L+ +F G+I + ++ D G SK GF+ F+ +A +A++
Sbjct: 137 NLYLSGLPKSMSEPELRSLFSSCGSIINCRILCDNTTGLSKGVGFIRFDQRVEAERAIKQ 196
Query: 89 LNGK--KFDDREWYVGKAQKKSEREQEL----------------------KGQFEQA--- 121
LNGK + V A S + +L G+F A
Sbjct: 197 LNGKVPEGATEPITVKFANAPSSNKNQLPITAMATYLSPTRRFLGPIHHPAGRFSSASRF 256
Query: 122 -------MKETVDKFQGLN-----LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PS 168
M T+ LN +++ NL ++ L +LF FG + S KV+RD +
Sbjct: 257 SPLDGGLMPNTLLSGNALNGAGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFQT 316
Query: 169 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
KG GFV + +EA A+ +NG + ++ L V+
Sbjct: 317 QKCKGFGFVTMTNYDEALMAIQSLNGYTLGNRVLQVS 353
>gi|170581784|ref|XP_001895836.1| RNA binding protein [Brugia malayi]
gi|158597095|gb|EDP35323.1| RNA binding protein, putative [Brugia malayi]
Length = 479
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKA 85
NV+++ L+++TTDEDL+ + ++G I S +M G+ K +GFV+FE A DA +A
Sbjct: 83 SLTNVYIRGLEQNTTDEDLRDMCAKFGRIASTKAIMDKATGQCKRYGFVDFEEAADALRA 142
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
VE LN +E V K+ F+Q ++ NLY+ NL + +
Sbjct: 143 VEGLN------QEGKVRAQMAKALSPNNQNSLFQQQEQDPT------NLYLANLPPNYTE 190
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPL 202
L++L +G+ S +V+++ G S+ GF E ++ + EMNGK I+ + PL
Sbjct: 191 RDLQKLLESYGSTISTRVLKNGDGSSRCVGFARMDNEELCAKIIKEMNGKKIIPGCNLPL 250
Query: 203 YVAVAQRKEERRAR 216
V A ++ ++R
Sbjct: 251 MVKYADSNKKTKSR 264
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 114/212 (53%), Gaps = 11/212 (5%)
Query: 11 GHFLRKQERE-TVAIKT---KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 66
GH ++ ++ E IKT F NVF KN +TT++++K IF G ++S DG
Sbjct: 173 GHAIKVEKYEKNYKIKTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDG 232
Query: 67 KSKCFGFVNFENADDAAKAVEALNGKK-FDDRE---WYVGKAQKKSEREQELKGQFEQAM 122
+ FGF N+ENA DA +A++ L+GK F+ + +YV +AQ K +R L FE+
Sbjct: 233 TLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLS 292
Query: 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST 181
++ NLY+ L ++ E+++ELFS+FG + S V +D K +V FST
Sbjct: 293 MSGLN--YKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFST 350
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213
+EAS A+ + N I S + + + K ER
Sbjct: 351 ADEASIAVEKGNEIYIDSVKINITYFKSKNER 382
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 18/199 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+ +KNL + L F +G I S V + GK K FGFV F+N + A KA+
Sbjct: 107 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKAL--- 163
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
KF G A K + E+ K +K F N++ KN + ++++K
Sbjct: 164 ---KFGTEMQMDGHAIKVEKYEKNYK------IKTGSRAFT--NVFFKNFPLTTTEQEMK 212
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS----KPLYVA 205
++F G ++S P G +G GF + +A RA+ E++GK + +P YV
Sbjct: 213 DIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQ 272
Query: 206 VAQRKEERRARLQAQFSQM 224
AQ K++R L + F ++
Sbjct: 273 QAQTKQQRLDSLSSAFEKL 291
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVV----MRDGDGKSKCFGFVNFENADDAAKAV 86
V+V +L + DL KIF G+I + + M + + C+ +V F ++A +AV
Sbjct: 18 VYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEALEAV 77
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
LN K D+E V K E + N+ IKNL D +
Sbjct: 78 NKLNFFKVHDKEMRVMLYDK-----------------ERIKSMDRGNIVIKNLSADCDSK 120
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA-----EMNGKMI 197
L + FS FG I SCKV + G KG GFV F A +AL +M+G I
Sbjct: 121 TLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMDGHAI 176
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N++V L + E+++++F ++G + S V +D + K + +V F AD+A+ AVE
Sbjct: 301 NLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEK 360
Query: 89 LNGKKFDDREWYVGKAQKKSEREQE 113
N D + + + K+EREQ+
Sbjct: 361 GNEIYIDSVKINITYFKSKNEREQD 385
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 102/181 (56%), Gaps = 10/181 (5%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV NLD + TDE + +F + G +T A ++ D G + + F+ F + + AA+A++++N
Sbjct: 40 LFVGNLDPAVTDEFIATLFNQMGAVTKAKIIFDFQGLADPYAFIEFSDHNQAAQALQSMN 99
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ DRE V A + ++ G + M D + ++++ +L ID KLKE
Sbjct: 100 GRQLLDRELRVNWAVEPNQ-----PGDSSRKM----DYSRHFHVFVGDLSSEIDSTKLKE 150
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F FG ++ K++RD + +KG GFV++ E+A RA+ +MNG+ + + + A R
Sbjct: 151 AFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNWASR 210
Query: 210 K 210
K
Sbjct: 211 K 211
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+VFV +L LK+ F +G ++ A ++RD K+K +GFV++ +DA +A+E
Sbjct: 133 HVFVGDLSSEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQ 192
Query: 89 LNGKKFDDREWYVGKAQKK---------------SEREQELKGQFEQAMKETVDKF--QG 131
+NG+ R A +K ER + G FE+ E +
Sbjct: 193 MNGQWLGRRTIRTNWASRKPGEEGERRGGGFERDRERGERFHGGFEKTYDEIFHQTSPDN 252
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
++Y+ +G +DE ++ F FG I ++ + +G FV F E A+RA+ +
Sbjct: 253 TSVYVGQIGSLTEDE-IRRAFDRFGAINEVRIFK-----LQGYAFVKFEQKEPAARAIVQ 306
Query: 192 MNGKMIVSK 200
MN I+ +
Sbjct: 307 MNNTEIMGQ 315
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 13/192 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V+ L T EDL KIF +G ITS+ ++ D G+SK +GF+N+ + A A+ L
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + + Y+ K ER Q + FE++ NLYIKNL ++ +
Sbjct: 190 NGLLVNGSKLYLNHHIAKKERIQRI--DFEKS--------NFTNLYIKNLPIDYTIDQFE 239
Query: 150 ELFSEFGTITSCKV--MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAV 206
LF++FG I+S + + D SK GF+ F E A A+ +N I ++ L V+
Sbjct: 240 SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSR 299
Query: 207 AQRKEERRARLQ 218
AQR++ER +
Sbjct: 300 AQRRDERNEQFH 311
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 24/146 (16%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
NLY++NL SIDD L F+ FG I S K+M G S+G GFV F T EASRAL M
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 193 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP--SGLGQ- 249
+G ++ + L+V+ AQ+ ++R G ++P++P G +GL Q
Sbjct: 486 HGNVLHGQMLHVSFAQKNNKKR--------------FGKQQQQQIPIHPNGSYYNGLYQN 531
Query: 250 ------QFLYGQAPPAIIPPQAGFGY 269
Q+ QA +PP +G GY
Sbjct: 532 PNQPPYQYYNTQAGQP-VPPPSGNGY 556
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 1 MLINDKQVFVGHFLRKQER-ETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+L+N ++++ H + K+ER + + K+ F N+++KNL T + + +F ++G I+S+
Sbjct: 192 LLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAKFGEISSS 251
Query: 59 VV--MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY-VGKAQKKSEREQEL 114
+ + DGD SK FGF+NF+N + A A+E+LN + ++ V +AQ++ ER ++
Sbjct: 252 FLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRDERNEQF 310
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 113 ELKGQ-FEQAMK------ETVDKFQGL----NLYIKNLGDSIDDEKLKELFSEFGTITSC 161
+LK Q FE++ K E +F L N+Y++ LG I E L ++F FG ITS
Sbjct: 99 KLKAQIFEKSFKLKFPQVEISVEFDALTHPGNIYVRGLGPEITTEDLFKIFEPFGEITSS 158
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217
K++ D G SKG GF+ +S A A++++NG ++ LY+ K+ER R+
Sbjct: 159 KIVNDEFGRSKGYGFINYSDGSSADDAISKLNGLLVNGSKLYLNHHIAKKERIQRI 214
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V+NL S D L F +G I SA +M +G+S+ +GFV F + +A++A+ A+
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 90 NGKKFDDREWYVGKAQKKSER 110
+G + +V AQK +++
Sbjct: 486 HGNVLHGQMLHVSFAQKNNKK 506
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 188/453 (41%), Gaps = 77/453 (16%)
Query: 13 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 72
++ + E+ + + +V N + T++ L+ +FG+YGTI S + K G
Sbjct: 149 YVMEYEKRMKDTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSVYIGYKRYNPQKIQG 208
Query: 73 FVNFENADDAAKAVEALNGKKF-----DDREWYVGKAQKKSEREQELKGQFEQAMKETVD 127
FV F N D A KAVE L + + YV + Q + ER + E+ KE V+
Sbjct: 209 FVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREERASINQKILEEKKKEEVE 268
Query: 128 KFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEA 185
+ +G LY+ GD +I E+L+E+F +G I SC + RD + K GFV T E A
Sbjct: 269 RTKGRFLYV-GFGDQTITLERLREIFQAYGNIESCSIARDKNTKELKPFGFVCMDTTENA 327
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS 245
A+ + L V +AQ +EER L+ + Q + V M
Sbjct: 328 QNAIRAFRESHDLK--LKVELAQTREERAKMLKERRKQTQGVVM---------------- 369
Query: 246 GLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR 305
Q+ P+ + +P+ G G R
Sbjct: 370 ----QY-------------------------------PVVQYTMPI------GMNMGNRM 388
Query: 306 GAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRR 365
+ QQ QQ +P+MP G+ +P M P M + + +
Sbjct: 389 PSNKQQQQQQQIPMMPMMYQTMGNMMSFPRNTQMPGMPVQMMNQGYMSMANTQFNEKYNK 448
Query: 366 DASVGQPM-PIT-ALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQT 423
AS+ Q M PI + A+ N E++R GE ++ L++ + +K+TGM+LE+
Sbjct: 449 LASLMQSMDPIKREMIDAMTN---EERRNTFGERIFYLIKTIGDPRCSKITGMMLELPVD 505
Query: 424 EVLHLLESPEALKAKVAEAMEVLRSVAQQQANN 456
+++ ++ P L K+ EA +VL Q NN
Sbjct: 506 DLMKIISDPGELLKKIDEANDVL-----DQTNN 533
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 44 DLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102
DL++ F +YG + + V+ D + K S+C+G+V+F A++A KA+E N +E V
Sbjct: 4 DLEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVM 63
Query: 103 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK 162
+ Q + ++ KG NL++KNL D + +++L + FS +G I SCK
Sbjct: 64 RQQLRFKQTCNPKG----------------NLFVKNLPDLMTNKELLDKFSAYGNILSCK 107
Query: 163 VMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
V D +G S G+V FS P + LA+MN ++ +YV +++
Sbjct: 108 VAFDKETGKSLHYGYVHFSDPNVTQKVLADMNKDVVEEGAMYVMEYEKR 156
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 22/190 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
N+FVKNL + T+++L F YG I S V D + GKS +G+V+F + + K +
Sbjct: 78 NLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLAD 137
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N ++ YV ++E+ MK+T + + Y+ N ++ ++ L
Sbjct: 138 MNKDVVEEGAMYV--------------MEYEKRMKDTSSDW--VTCYVANFPTTLTEDGL 181
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-----PLY 203
++LF ++GTI S + K GFV F+ + A +A+ + ++I + LY
Sbjct: 182 RDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLY 241
Query: 204 VAVAQRKEER 213
V Q +EER
Sbjct: 242 VNRLQSREER 251
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 81/133 (60%), Gaps = 11/133 (8%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE D A +
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFT----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGT 157
DE+LKE FS++G
Sbjct: 204 DERLKETFSKYGC 216
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 26/205 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N FD +KG+ + M D + G+ N++IKNL SID
Sbjct: 72 MN---FD-----------------VIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQFSQMRPVAM 229
+ + ER A L A+ + V +
Sbjct: 171 GRFKCRREREAELGAKAKEFTNVYI 195
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 MLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGT 54
ML+ND++VFVG F ++ERE + K K F NV++KN E DE LK+ F +YG
Sbjct: 161 MLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGC 216
>gi|361069707|gb|AEW09165.1| Pinus taeda anonymous locus CL4424Contig1_01 genomic sequence
Length = 84
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 338 NMQDFPFDMGAGSMLPVPVDMGA-GIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
N+ + P G MLPVP DM + IP DA + Q P+ +++ALANA+PEQQRT+LGE
Sbjct: 1 NVPEVPLTGVGGGMLPVPFDMSSVPIPAPDAGISQSSPMETMASALANATPEQQRTMLGE 60
Query: 397 SLYPLVEQLERDAAAKVTGMLLEM 420
SLYPLV QLE D AAKVTGMLLEM
Sbjct: 61 SLYPLVHQLEHDHAAKVTGMLLEM 84
>gi|167523433|ref|XP_001746053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775324|gb|EDQ88948.1| predicted protein [Monosiga brevicollis MX1]
Length = 635
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ + + S + +DL+ +FG YG + S +M D GKS +GFV +E+ + A KA +A
Sbjct: 189 NLIINYIPNSFSQDDLRALFGAYGALKSCKLMYDRATGKSLGYGFVEYEDENGATKAADA 248
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + +++ LK F + T+ NLYIK L +I+++ L
Sbjct: 249 LNEFQIENKR---------------LKVSFARPSSSTITN---ANLYIKGLPTTINEQSL 290
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 206
++FS G I S +V+ D +G KG GFV F +EA A+ N + PL V
Sbjct: 291 TDMFSSCGDIISVRVLYDRNGTPKGVGFVRFDQHKEAENAIQRFNNVTPEGCTTPLVVKF 350
Query: 207 AQRKEERRA 215
A + R A
Sbjct: 351 ADNAKSRAA 359
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 23 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADD 81
AI + +FV NL + T++DL + G+YG + SA ++R + G SK + F+ D
Sbjct: 435 AISDQGICLFVYNLPPACTEQDLTALVGQYGNVRSASIVRYKETGSSKGYAFITVATNAD 494
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSER 110
A + LN +++ R+ V +K+S R
Sbjct: 495 ATNVIRNLNNMRYNGRDLQV-SFKKQSRR 522
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR-DPSGISKGSGFVAFSTPEEASRA 188
QG+ L++ NL + ++ L L ++G + S ++R +G SKG F+ +T +A+
Sbjct: 439 QGICLFVYNLPPACTEQDLTALVGQYGNVRSASIVRYKETGSSKGYAFITVATNADATNV 498
Query: 189 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG 248
+ +N + L V+ K++ R A M + P PR Y P G
Sbjct: 499 IRNLNNMRYNGRDLQVSF---KKQSRRPAHADMGNMHAGHVLPHAGPRDMSYMHMPLDAG 555
Query: 249 QQFLYGQAPPAIIP------PQAGFGYQQQ-------LVPG----------MRPAGAPMP 285
L AP IP P G G Q L PG + P+ APMP
Sbjct: 556 YGSLPATAPQMGIPGRHPSLPMMGMGMQASMQTPISPLSPGTAAHLLNPGLLSPSAAPMP 615
>gi|312078882|ref|XP_003141933.1| RNA binding protein [Loa loa]
Length = 481
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKA 85
NV+++ L+++TTD+DL+ + ++G I S +M G+ K +GFV+FE A DA +A
Sbjct: 81 SLTNVYIRGLEQNTTDDDLRDMCAKFGRIASTKAIMDKTTGQCKRYGFVDFEEAADAVRA 140
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
VE LN +E V K+ F+Q ++ NLY+ NL + +
Sbjct: 141 VEGLN------QEGKVRAQMAKALSPNNQNSLFQQQEQDPT------NLYLANLPPNYTE 188
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPL 202
L++L +G+ S +V+++ G S+ GF E ++ + EMNGK I+ + PL
Sbjct: 189 RDLQKLLESYGSTISTRVLKNGDGSSRCVGFARMDNEELCAKIIKEMNGKKIIPGCNLPL 248
Query: 203 YVAVAQRKEERRAR 216
V A ++ ++R
Sbjct: 249 MVKYADSNKKTKSR 262
>gi|393912218|gb|EFO22141.2| RNA binding protein [Loa loa]
Length = 483
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKA 85
NV+++ L+++TTD+DL+ + ++G I S +M G+ K +GFV+FE A DA +A
Sbjct: 83 SLTNVYIRGLEQNTTDDDLRDMCAKFGRIASTKAIMDKTTGQCKRYGFVDFEEAADAVRA 142
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
VE LN +E V K+ F+Q ++ NLY+ NL + +
Sbjct: 143 VEGLN------QEGKVRAQMAKALSPNNQNSLFQQQEQDPT------NLYLANLPPNYTE 190
Query: 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPL 202
L++L +G+ S +V+++ G S+ GF E ++ + EMNGK I+ + PL
Sbjct: 191 RDLQKLLESYGSTISTRVLKNGDGSSRCVGFARMDNEELCAKIIKEMNGKKIIPGCNLPL 250
Query: 203 YVAVAQRKEERRAR 216
V A ++ ++R
Sbjct: 251 MVKYADSNKKTKSR 264
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 8/187 (4%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 83
+T ++V NL S + L +F +G +T+A V +D G SK +GFV + + AA
Sbjct: 388 ETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAA 447
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA--MKETVDKFQGLNLYIKNLGD 141
+AV LNG+ D R+ V + S L ++ TV + NLY+ N+
Sbjct: 448 EAVIHLNGRLVDGRKIEV----RVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPS 503
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSK 200
SID +KL ELF FG IT +V+ DP S KG GF+ F+ E A++A+A MNG ++ +
Sbjct: 504 SIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGE 563
Query: 201 PLYVAVA 207
+ V VA
Sbjct: 564 MIIVRVA 570
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N++V NL S L ++F +G I + V+ D G S+ +GFV + + A++A++
Sbjct: 297 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 356
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NG+ + R V A S + +Q KET LY+ NL S++ ++
Sbjct: 357 RMNGRLVEGRALEVRVAGFPSSEDNS-----QQPSKET----DMAKLYVCNLSLSMNTDR 407
Query: 148 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L LF FG +T+ KV +D +G+SKG GFV +S+P A+ A+ +NG+++ + + V V
Sbjct: 408 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 467
Query: 207 A 207
+
Sbjct: 468 S 468
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 6/193 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V + S T++ +F +G + A + R + +G V F+N AA A++ L
Sbjct: 680 NLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHL 734
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + V A +E Q + NLY+ +L +++E+L
Sbjct: 735 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLI 794
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF G IT KV+ + +G+SKG GFV F+ A+ AL MNG + L V +A
Sbjct: 795 DLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAG 854
Query: 209 RKEERRARLQAQF 221
+ + A F
Sbjct: 855 VHPDAMSSYMAHF 867
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 93 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
+FDD++ ++ K Q+ + G +KE VD NLY+ NL S+ KL ELF
Sbjct: 265 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKE-VDN---TNLYVGNLPASVGSHKLIELF 317
Query: 153 SEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
FG I +V+ D +G+S+G GFV +S P AS A+ MNG+++ + L V VA
Sbjct: 318 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 373
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+N++V N+ S + L ++F +G IT A V+ D D S K +GF+ F +++ A KA+
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSID 144
A+NG V + G A V Q +N LYI NL S+
Sbjct: 554 AMNGALVGGEMIIV-----------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMT 602
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+K+ LF+ FG IT KV+ ++ V ++ A +A+ M+G M+ K L V
Sbjct: 603 ADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVV 655
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ NL S T + + +F +G IT ++ + + V + +A A KAV+ ++
Sbjct: 592 LYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------YSLVWYADAPSAIKAVQHMD 644
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G + + V +R + QA + + + NLY+ + S+ +++ +
Sbjct: 645 GYMVEGKRLVV-------KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFID 697
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
LF FG + ++ R + G V F P A+ A+ ++G I L V VA
Sbjct: 698 LFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLP 752
Query: 211 EERRARLQAQFSQM 224
E A A SQM
Sbjct: 753 AESNAAKGALTSQM 766
>gi|302142288|emb|CBI19491.3| unnamed protein product [Vitis vinifera]
Length = 61
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 56/58 (96%)
Query: 414 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLV 471
+ MLLEMDQTEVLHLLESPEALK+KVAEAM+VLR+VAQQQAN+P +QLASLSLN++LV
Sbjct: 3 SSMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTEQLASLSLNDSLV 60
>gi|383172783|gb|AFG69765.1| Pinus taeda anonymous locus CL4424Contig1_01 genomic sequence
gi|383172785|gb|AFG69766.1| Pinus taeda anonymous locus CL4424Contig1_01 genomic sequence
gi|383172787|gb|AFG69767.1| Pinus taeda anonymous locus CL4424Contig1_01 genomic sequence
gi|383172789|gb|AFG69768.1| Pinus taeda anonymous locus CL4424Contig1_01 genomic sequence
gi|383172791|gb|AFG69769.1| Pinus taeda anonymous locus CL4424Contig1_01 genomic sequence
Length = 84
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 338 NMQDFPFDMGAGSMLPVPVDMGA-GIPRRDASVGQPMPITALSTALANASPEQQRTLLGE 396
N+ + P G MLPVP DM + IP DA + Q P+ +++ALANA+PEQQRT+LGE
Sbjct: 1 NVPEVPLTGVGGGMLPVPFDMSSVPIPAPDAGISQSSPMETMASALANATPEQQRTMLGE 60
Query: 397 SLYPLVEQLERDAAAKVTGMLLEM 420
SLYPLV QLE D AAKVTGMLLEM
Sbjct: 61 SLYPLVNQLEHDHAAKVTGMLLEM 84
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NV+VKNLD + ++ L F +G I S V DGKS+ FGFV+FE+ + A A+ L
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ YV +K +ER F N+YIK++ S ++EK+K
Sbjct: 76 NGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKHIPASWNEEKIK 122
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
E F FG ITS V DP G + FV ++ E+A A+ EM+GK +
Sbjct: 123 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
N+Y+KNL +ID++ L + FS FG I SCKV P G S+G GFV F + E A A+A++
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 193 NGKMIVSKPLYVAVAQRKEER 213
NG I K +YVA ++ ER
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M I +K V+V F + ER K F NV++K++ S +E +K+ FG +G ITS V
Sbjct: 78 MQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEEKIKEEFGAFGEITSLAV 136
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 98
D G+ F FVN+ + A AVE ++GK + E
Sbjct: 137 QTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEE 172
>gi|301610019|ref|XP_002934573.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
2-like [Xenopus (Silurana) tropicalis]
Length = 389
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L STTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 51 TNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVT 110
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 111 ALKASGV--------QAQMAKQQEQDPT-----------------NLYISNLPVSMDEQE 145
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ L FG + S +++RD SG S+G GF + E+ ++ NGK I + P
Sbjct: 146 LESLLKPFGQVISTRILRDASGTSRGVGFARMESTEKCEAVISHFNGKYIKTPP 199
>gi|410912897|ref|XP_003969925.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Takifugu rubripes]
Length = 374
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 34/196 (17%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N++++ L +TTD DL K+ +YG I SA + D K K +GFV+F+N A KAV A
Sbjct: 47 NLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDNPAAALKAVHA 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
L +AQ ++EQ+ NLYI NL S+D+++L
Sbjct: 107 LKTSGI--------QAQMAKQQEQD-----------------PTNLYISNLPLSVDEKEL 141
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--------SK 200
+ FG + S +++RD SG S+G GF T E+ ++ NGK I S+
Sbjct: 142 HNMLQPFGQVVSTRILRDYSGSSRGVGFARMDTTEQCHAVISHFNGKFIKIPSGALAPSQ 201
Query: 201 PLYVAVAQRKEERRAR 216
PL A + ++
Sbjct: 202 PLLCKFADSQRKKHGH 217
>gi|452845910|gb|EME47843.1| hypothetical protein DOTSEDRAFT_167231 [Dothistroma septosporum
NZE10]
Length = 500
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 19/207 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF--GFVNFENADDAAKAVEA 88
++V LD T++ LK+IF G + + ++ D + +SK + GFV +++ A +A++
Sbjct: 85 LYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQT 144
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG++ +E V A + + +E +T + F ++++ +L + ++DE L
Sbjct: 145 LNGRRVHQQEIRVNWAYQSNTNTKE----------DTSNHF---HIFVGDLSNEVNDEVL 191
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FGT++ +VM D +G S+G GFVA+ EA +AL+ M+G+ + S+ + A
Sbjct: 192 LQAFSAFGTVSEARVMWDMKTGRSRGYGFVAYRDRGEAEKALSSMDGEWLGSRAIRCNWA 251
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSVP 234
+K + Q +QM M P+ P
Sbjct: 252 NQKGQPSFSQQQAMAQM---GMTPTTP 275
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 47/293 (16%)
Query: 7 QVFVGHFLRKQE-RETVAIKTKFN---------NVFVKNLDESTTDEDLKKIFGEYGTIT 56
Q G + +QE R A ++ N ++FV +L DE L + F +GT++
Sbjct: 143 QTLNGRRVHQQEIRVNWAYQSNTNTKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVS 202
Query: 57 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSERE 111
A VM D G+S+ +GFV + + +A KA+ +++G+ R W K Q ++
Sbjct: 203 EARVMWDMKTGRSRGYGFVAYRDRGEAEKALSSMDGEWLGSRAIRCNWANQKGQPSFSQQ 262
Query: 112 QELK----------------GQFEQAMKETVD---KFQGLNLYIKNLGDSIDDEKLKELF 152
Q + Q Q+ + V+ ++Q Y+ NL L LF
Sbjct: 263 QAMAQMGMTPTTPYGHHTFPTQGSQSYEMVVNQTPQWQ-TTCYVGNLTPYTTQNDLVPLF 321
Query: 153 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
FG +T + D +G FV T E A+ A+ +++G + +PL + + +
Sbjct: 322 QNFGYVTETRFQSD-----RGFAFVKMDTHENAANAICQLSGYNVNGRPLKCSWGKDRPP 376
Query: 213 RRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQA 265
QF P S P+ +YP P Q YGQ + PQA
Sbjct: 377 T-----GQFDGYNPAQTPQSAVPQSAVYPGPPQAFFPQ--YGQPSAPAMSPQA 422
>gi|41053419|ref|NP_956615.1| RNA-binding protein 28 [Danio rerio]
gi|30353878|gb|AAH51781.1| Zgc:56258 [Danio rerio]
Length = 864
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A KA A+N
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMN 185
Query: 91 GKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-------LYIKNL 139
K DR +W + + E + E+ + +KF+G+ L I+NL
Sbjct: 186 RKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRLIIRNL 243
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+++ LK++FSEFGT+ K+ P G +G FV F EA +AL MNGK I
Sbjct: 244 SFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKD 303
Query: 200 KPLYV--AVAQRK 210
+ + V A+A+ K
Sbjct: 304 RQVAVDWAIAKDK 316
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV+ L E+ ++E L +IF E G + + V+ D + K + FG+V F DDA +A++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 91 GKKFDDREWYV---------------GKAQKKSEREQELKGQFEQAMKETV----DKFQG 131
K +DD++ +V K K S +E + E E + K +
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDRKRKKNAKTNKDSGDTEESQKSGETKNTEKIPSPTKKKEN 123
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
L I+NL +D++LK++FS+FGT+ ++ P G KG FV F EA +A A
Sbjct: 124 SWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAA 183
Query: 192 MNGKMIVSKPLYV 204
MN K I +P+ V
Sbjct: 184 MNRKAIRDRPVEV 196
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 191 EMNGKMIVSKPLYVAVA 207
E+ K+ + ++V VA
Sbjct: 63 EV--KLYDDQKIFVTVA 77
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 42/268 (15%)
Query: 32 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 90
+V NLD +E L ++F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
K + V KA + K+++D G NL+I NL +D++ L +
Sbjct: 88 MIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGNLDPDVDEKLLYD 130
Query: 151 LFSEFGTI-TSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS FG I T+ K+MRDP +G S+G GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 209 RKEERRARL-----------QAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG----QQFLY 253
+K+ + R + RP + S PP +P P +G+ + F+
Sbjct: 191 KKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSAPQA-NGVAPVPPRPFVN 249
Query: 254 GQAPPAI-----IPPQAGFGYQQQLVPG 276
G AP AI PPQA +Q VPG
Sbjct: 250 GVAPAAIPTLRPPPPQAA-AFQPMPVPG 276
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I T+ +MRD + G S+ FGF+++++ + + A+E
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIE 172
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R+ V A KK +
Sbjct: 173 AMNGQYLCNRQITVSYAYKKDTK 195
>gi|449671841|ref|XP_002159569.2| PREDICTED: uncharacterized protein LOC100210692 [Hydra
magnipapillata]
Length = 655
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 108/205 (52%), Gaps = 24/205 (11%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++VK+L E D DL +F E+ I V+++ +G+SK G V F N +D A+ +N
Sbjct: 389 IYVKSLHEDAQDSDLNNLFAEFRPI-KCYVLKERNGRSKQSGIVEFSNEEDTLNAIRKMN 447
Query: 91 GKKFDDREWYVGKAQKKSEREQEL-----KGQFEQAMKETVD-----------------K 128
G + ++ V + KSE + + K + Q ++D
Sbjct: 448 GFMYMSKQLCVEFGKSKSEAKDSIPDSRNKAKPSQKSGSSLDLSTRPVQKLKSSKKSRKN 507
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 188
+ L ++NL D ++++ L+ LFS FG I S KVM +G S+G GFV++ T EEAS+A
Sbjct: 508 KKLFKLRVENLDDDVNNDGLRRLFSPFGKIISAKVMTYNNGNSQGYGFVSYETNEEASKA 567
Query: 189 LAEMNGKMIVS-KPLYVAVAQRKEE 212
++ MNG + S K L VA +++KE+
Sbjct: 568 ISSMNGVQLSSKKSLVVAYSEQKEK 592
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
VFVKNL E D DL +F ++ I V+++ +G+SK G V F N ++A A+ +N
Sbjct: 274 VFVKNLHEDACDSDLNYLFEQFRPI-KCYVLKERNGRSKRSGVVEFSNEENAFDAIRLMN 332
Query: 91 GKKFDDREWYVGKAQKKSEREQE------LKGQF-----EQAMKETVDKFQGL--NLYIK 137
++ +E V + K+E +++ +K + + K Q L +Y+K
Sbjct: 333 NFEYMSKELCVEPCKSKNESKKDSISDPGIKDPYGSQSSLDSQSSINSKTQSLPLKIYVK 392
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
+L + D L LF+EF I C V+++ +G SK SG V FS E+ A+ +MNG M
Sbjct: 393 SLHEDAQDSDLNNLFAEFRPI-KCYVLKERNGRSKQSGIVEFSNEEDTLNAIRKMNGFMY 451
Query: 198 VSKPLYVAVAQRKEERR-----ARLQAQFSQMRPVAMGPSVPP 235
+SK L V + K E + +R +A+ SQ ++ S P
Sbjct: 452 MSKQLCVEFGKSKSEAKDSIPDSRNKAKPSQKSGSSLDLSTRP 494
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 59/104 (56%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 92
V+NLD+ ++ L+++F +G I SA VM +G S+ +GFV++E ++A+KA+ ++NG
Sbjct: 515 VENLDDDVNNDGLRRLFSPFGKIISAKVMTYNNGNSQGYGFVSYETNEEASKAISSMNGV 574
Query: 93 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ ++ V ++ E+ + G + +E + L+ I
Sbjct: 575 QLSSKKSLVVAYSEQKEKLNNVDGNKNEVERECCVCYGDLSTRI 618
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189
+++KNL + D L LF + G+ITS V+RD G SKGSG + FS EEAS A+
Sbjct: 73 IHVKNLHEDAGDSDLNNLFEQIGSITSFYVLRDNYGRSKGSGVIKFSNEEEASNAI 128
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ VKNL E D DL +F + G+ITS V+RD G+SK G + F N ++A+ A+ +
Sbjct: 73 IHVKNLHEDAGDSDLNNLFEQIGSITSFYVLRDNYGRSKGSGVIKFSNEEEASNAIRWVT 132
Query: 91 --------GKKFDDREW 99
G FD+ W
Sbjct: 133 KTYLGRILGMPFDEAFW 149
>gi|74179640|dbj|BAE22471.1| unnamed protein product [Mus musculus]
Length = 403
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 121
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 122 ALKANGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 156
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
LK + FG + S +V+RD SG S+G GF + E+ + NGK I + P
Sbjct: 157 LKNMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>gi|156088689|ref|XP_001611751.1| RNA recognition motif domaining containing protein [Babesia bovis]
gi|154799005|gb|EDO08183.1| RNA recognition motif domaining containing protein [Babesia bovis]
Length = 280
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 43/248 (17%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V N+D +E L + F + G + + RD G + + FV F+ DDA A+ L
Sbjct: 20 LYVGNVDTQVDEELLWEFFVQVGPVKHLHIPRDKVTGHHQGYAFVEFDTDDDADYAIRIL 79
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K ++ + KA + K FE G NL+I NL +DD++L
Sbjct: 80 NFVKLYNKPLRLNKASRD-------KQTFEI----------GANLFIGNLDPDVDDKQLH 122
Query: 150 ELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG + S V+RD K FV++ + E + ALA MNG+ I +KP++V+ A
Sbjct: 123 DTFASFGNVISANVVRDGDATDRKAFAFVSYDSFEASDAALAAMNGQFICNKPIHVSYAY 182
Query: 209 RKE---ERRA----------RLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQ 255
+K+ ER R +QM G S MP++PP
Sbjct: 183 KKDTKGERHGSAAERLIAANRPHEYLTQMGVAPYGTSGSNAMPVFPP-----------PM 231
Query: 256 APPAIIPP 263
A P ++PP
Sbjct: 232 AAPVVVPP 239
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEA 88
N+F+ NLD D+ L F +G + SA V+RDGD K F FV++++ + + A+ A
Sbjct: 106 NLFIGNLDPDVDDKQLHDTFASFGNVISANVVRDGDATDRKAFAFVSYDSFEASDAALAA 165
Query: 89 LNGKKFDDREWYVGKAQKKSER 110
+NG+ ++ +V A KK +
Sbjct: 166 MNGQFICNKPIHVSYAYKKDTK 187
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
D+ Q LY+ N+ +D+E L E F + G + + RD +G +G FV F T ++A
Sbjct: 13 DRNQEATLYVGNVDTQVDEELLWEFFVQVGPVKHLHIPRDKVTGHHQGYAFVEFDTDDDA 72
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEE 212
A+ +N + +KPL + A R ++
Sbjct: 73 DYAIRILNFVKLYNKPLRLNKASRDKQ 99
>gi|94733636|emb|CAK04114.1| novel protein (zgc:56258) [Danio rerio]
Length = 865
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+ ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A KA A+N
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMN 185
Query: 91 GKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN-------LYIKNL 139
K DR +W + + E + E+ + +KF+G+ L I+NL
Sbjct: 186 RKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKSRLIIRNL 243
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+++ LK++FSEFGT+ K+ P G +G FV F EA +AL MNGK I
Sbjct: 244 SFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKD 303
Query: 200 KPLYV--AVAQRK 210
+ + V A+A+ K
Sbjct: 304 RQVAVDWAIAKDK 316
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+FV+ L E+ ++E L +IF E G + + V+ D + K + FG+V F DDA +A++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 91 GKKFDDREWYV---------------GKAQKKSEREQELKGQFEQAMKETV----DKFQG 131
K +DD++ +V K K S +E + E E + K +
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKKEN 123
Query: 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191
L I+NL +D++LK++FS+FGT+ ++ P G KG FV F EA +A A
Sbjct: 124 GWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAA 183
Query: 192 MNGKMIVSKPLYV 204
MN K I +P+ V
Sbjct: 184 MNRKAIRDRPVEV 196
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL
Sbjct: 3 AVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALK 62
Query: 191 EMNGKMIVSKPLYVAVA 207
E+ K+ + ++V VA
Sbjct: 63 EV--KLYDDQKIFVTVA 77
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 8/187 (4%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 83
+T ++V NL S + L +F +G +T+A V +D G SK +GFV + + AA
Sbjct: 300 ETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAA 359
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA--MKETVDKFQGLNLYIKNLGD 141
+AV LNG+ D R+ V + S L ++ TV + NLY+ N+
Sbjct: 360 EAVIHLNGRLVDGRKIEV----RVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPS 415
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMNGKMIVSK 200
SID +KL ELF FG IT +V+ DP S KG GF+ F+ E A++A+A MNG ++ +
Sbjct: 416 SIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGE 475
Query: 201 PLYVAVA 207
+ V VA
Sbjct: 476 MIIVRVA 482
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N++V NL S L ++F +G I + V+ D G S+ +GFV + + A++A++
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NG+ + R V A S + +Q KET LY+ NL S++ ++
Sbjct: 269 RMNGRLVEGRALEVRVAGFPSSEDNS-----QQPSKET----DMAKLYVCNLSLSMNTDR 319
Query: 148 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L LF FG +T+ KV +D +G+SKG GFV +S+P A+ A+ +NG+++ + + V V
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 207 A 207
+
Sbjct: 380 S 380
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 6/193 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V + S T++ +F +G + A + R + +G V F+N AA A++ L
Sbjct: 592 NLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHL 646
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + V A +E Q + NLY+ +L +++E+L
Sbjct: 647 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLI 706
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF G IT KV+ + +G+SKG GFV F+ A+ AL MNG + L V +A
Sbjct: 707 DLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAG 766
Query: 209 RKEERRARLQAQF 221
+ + A F
Sbjct: 767 VHPDAMSSYMAHF 779
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+N++V N+ S + L ++F +G IT A V+ D D S K +GF+ F +++ A KA+
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSID 144
A+NG V + G A V Q +N LYI NL S+
Sbjct: 466 AMNGALVGGEMIIV-----------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMT 514
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+K+ LF+ FG IT KV+ ++ V ++ A +A+ M+G M+ K L V
Sbjct: 515 ADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVV 567
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ NL S T + + +F +G IT ++ + + V + +A A KAV+ ++
Sbjct: 504 LYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------YSLVWYADAPSAIKAVQHMD 556
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G + + V +R + QA + + + NLY+ + S+ +++ +
Sbjct: 557 GYMVEGKRLVV-------KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFID 609
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
LF FG + ++ R + G V F P A+ A+ ++G I L V VA
Sbjct: 610 LFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLP 664
Query: 211 EERRARLQAQFSQM 224
E A A SQM
Sbjct: 665 AESNAAKGALTSQM 678
>gi|453087889|gb|EMF15930.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 486
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF--GFVNFENADDAAKAVEA 88
++V LD T++ LK+IF G + S ++ D + +SK + GFV +++ A +A++
Sbjct: 83 LYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQT 142
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG++ +E V A + + +E +T + F ++++ +L + ++DE L
Sbjct: 143 LNGRRVHQQEIRVNWAYQSNTSAKE----------DTSNHF---HIFVGDLSNEVNDEVL 189
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FGT++ +VM D +G S+G GF AF EA +AL+ M+G+ + S+ + A
Sbjct: 190 LQAFSAFGTVSEARVMWDMKTGRSRGYGFAAFRDRGEAEKALSSMDGEWLGSRAIRCNWA 249
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSVP 234
+K + Q +QM M P+ P
Sbjct: 250 NQKGQPSFSQQQAMAQM---GMTPTTP 273
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 125/332 (37%), Gaps = 54/332 (16%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +GT++ A VM D G+S+ +GF F + +A KA+ +
Sbjct: 174 HIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFAAFRDRGEAEKALSS 233
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELK-------------------GQFEQAMKET 125
++G+ R W K Q ++Q + Q + + +
Sbjct: 234 MDGEWLGSRAIRCNWANQKGQPSFSQQQAMAQMGMTPTTPYGHHQFPTQGSQSYEMIVQQ 293
Query: 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
++Q +Y+ NL L LF FG +T + D +G F+ T E A
Sbjct: 294 TPQWQ-TTVYVGNLTPYTTQNDLVPLFQNFGYVTETRFQSD-----RGFAFIKMDTHENA 347
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS 245
+ A+ +++G + +PL + + + QF P A P PS
Sbjct: 348 ANAICQLSGYQVNGRPLKCSWGKDRPPT-----GQFDGFSPAAQTPGS--------AFPS 394
Query: 246 GLGQQFLYGQAPPAIIPPQAGF--GYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG----Q 299
Q F P + PQ G+QQ PAG P + G QG Q
Sbjct: 395 ATPQAFFPQYQQPGAMSPQGATPAGFQQ-----ASPAGWQQPGMAPSALHPGAQGWPGAQ 449
Query: 300 RPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY 331
P G P Q +P Q P G Y
Sbjct: 450 MPHSASGFNPQAQAGYGVPQAAPQSAPFGRGY 481
>gi|348516630|ref|XP_003445841.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Oreochromis niloticus]
Length = 370
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 34/196 (17%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N++++ L +TTD DL K+ +YG I SA + D K K +GFV+F++ A KAV A
Sbjct: 43 NLYIRGLPPATTDLDLIKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHA 102
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
L +AQ ++EQ+ NLYI NL S+D+++L
Sbjct: 103 LKTSGI--------QAQMAKQQEQD-----------------PTNLYISNLPLSVDEKEL 137
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--------SK 200
+ + FG + S +++RD SG S+G GF T E+ + ++ NGK I S+
Sbjct: 138 ENMLQPFGQVVSTRILRDYSGNSRGVGFARMDTTEQCNAVISHFNGKFIKTASGALAPSQ 197
Query: 201 PLYVAVAQRKEERRAR 216
PL A + ++ A
Sbjct: 198 PLLCKFADSQRKKHAH 213
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD+ T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 88 LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLN 147
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F +++ +L + ++DE L +
Sbjct: 148 GRRVHQSEIRVNWAYQSNTSSKE----------DTSNHFH---IFVGDLSNEVNDEVLTQ 194
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 195 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + AQ M+ + + P+ P
Sbjct: 255 KGQPSI---AQQQAMQAMGLTPTTP 276
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + DA KA+ +
Sbjct: 177 HIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 236
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELK--------------------GQFEQAMKE 124
++G+ R W K Q ++Q ++ +E + +
Sbjct: 237 MDGEWLGSRAIRCNWANQKGQPSIAQQQAMQAMGLTPTTPFGHHQFPAHGVASYEVVLAQ 296
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184
T +Q Y+ NL + LF FG + + D +G F+ + E
Sbjct: 297 T-PSWQ-TTCYVGNLTPYTTPNDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHES 349
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRK 210
A+ A+ +MNG + +PL + + K
Sbjct: 350 AAMAICQMNGYNVNGRPLKCSWGKDK 375
>gi|408392881|gb|EKJ72170.1| hypothetical protein FPSE_07657 [Fusarium pseudograminearum CS3096]
Length = 484
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 99/181 (54%), Gaps = 3/181 (1%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ LD+ T+E L++IF G + + ++ D + + +GFV +++ A +A++ LN
Sbjct: 84 LYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQTLN 143
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ Y ++ +E + ++ D ++++ +L + ++DE L +
Sbjct: 144 GRRVHQSVPY--PDTTRNSKEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVNDEVLTQ 201
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF EA +AL+ M+G+ + S+ + A +
Sbjct: 202 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNWANQ 261
Query: 210 K 210
K
Sbjct: 262 K 262
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 41/290 (14%)
Query: 4 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
N K++ V + F+ +FV +L DE L + F +G+++ A VM D
Sbjct: 159 NSKEIRVNWAYQSNTTNKEDTSNHFH-IFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWD 217
Query: 64 -GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK------- 115
G+S+ +GFV F + +A KA+ +++G+ R A +K + +
Sbjct: 218 MKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNWANQKGQPSMAQQQAMQAMG 277
Query: 116 -----------------GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 158
+E + +T +Q +Y+ NL + LF FG +
Sbjct: 278 MTPTTPYGHHQFPAHGVASYEVILTQT-PSWQ-TTVYVGNLTPYTTPNDVVPLFQNFGFV 335
Query: 159 TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 218
+ D +G F+ + E A+ A+ +MNG + +PL + + ++ Q
Sbjct: 336 VESRFQAD-----RGFAFIKMDSHENAAMAICQMNGYNVNGRPLKCSWGK---DKTPNAQ 387
Query: 219 AQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF--LYGQAPPAIIPPQAG 266
F ++P + + + P +P P+G Q+ YG P PQAG
Sbjct: 388 GGFDPVQPFSPQSA---QAPGFPGTPTGYYPQYGAQYGGQPGNYGGPQAG 434
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193
LYI L + +E L+++F G + + K++ D + GFV + P A RA+ +N
Sbjct: 84 LYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQTLN 143
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQ 220
G+ + Y + +E R Q
Sbjct: 144 GRRVHQSVPYPDTTRNSKEIRVNWAYQ 170
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 35/257 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ V L +S T +D++ +F G + S ++RD G+S +GFVN++ +DA+KA+ +
Sbjct: 29 NLIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQSLGYGFVNYKRQEDASKAITS 88
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG + ++ V A+ SE +G NLYI L ++ L
Sbjct: 89 LNGLRLQNKTIKVSVARPSSE------------------SIKGANLYISGLPKNMTQVDL 130
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYVA 205
+ +F+ G I + +++ D +GISKG GF+ F EA RA+ +NG + + P+ V
Sbjct: 131 ENMFNHCGNIITSRILCDQNTGISKGVGFIRFDQRHEAERAIKMLNGTIPEGATDPITVK 190
Query: 206 VAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLG------QQFLYGQAPPA 259
AQ + L Q+ VA + P + P LG +F Y +A P
Sbjct: 191 FAQHPSSAKNIL-----QVPAVAASATTNPTQYLAPAARRFLGPIHHPTGRFRYVEASPG 245
Query: 260 IIPPQ--AGFGYQQQLV 274
+ F QQ+LV
Sbjct: 246 SFSCSLFSLFPLQQRLV 262
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL T + L ++FG +G + + V+RD K K FGFV N ++A A+ AL
Sbjct: 280 LFVYNLAPETEENVLWQLFGPFGAVQNVKVVRDYATLKCKGFGFVTMTNYEEALMAIHAL 339
Query: 90 NGKKFDDREWYVGKAQKKS 108
NG DR V + K+
Sbjct: 340 NGIALGDRVLQVSFKKHKN 358
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRAL 189
G L++ NL ++ L +LF FG + + KV+RD + + KG GFV + EEA A+
Sbjct: 277 GYCLFVYNLAPETEENVLWQLFGPFGAVQNVKVVRDYATLKCKGFGFVTMTNYEEALMAI 336
Query: 190 AEMNGKMIVSKPLYVAVAQRKE 211
+NG + + L V+ + K
Sbjct: 337 HALNGIALGDRVLQVSFKKHKN 358
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 16/181 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V NLD S T+E L +F + GT+ S ++R+ F F+ + N A A+ A+N
Sbjct: 10 LYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRETSIDP--FAFIEYANHQSAQTALAAMN 67
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
+ F +E V A + + D Q ++++ +L ID E L+E
Sbjct: 68 KRMFLKKEIRVNWATSAGNQPK-------------TDTSQHHHIFVGDLSPEIDTETLRE 114
Query: 151 LFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F+ FG I++C+++RDP + S+G FV+F EA A+A MNG+ + S+ + + R
Sbjct: 115 AFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRTNWSTR 174
Query: 210 K 210
K
Sbjct: 175 K 175
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
Query: 13 FLRKQERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 63
FL+K+ R A ++ +++FV +L E L++ F +G I++ ++RD
Sbjct: 71 FLKKEIRVNWATSAGNQPKTDTSQHHHIFVGDLSPEIDTETLREAFAPFGEISNCRIVRD 130
Query: 64 GDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQF 118
KS+ + FV+F +A A+ +NG+ R W K E + +K
Sbjct: 131 PQTLKSRGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRTNWSTRKPPAPRENSKGIKSGK 190
Query: 119 EQAMKETVDKFQGLNLYIKNLG---DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 175
+E + N + G ++I DE +++ F++FG I +V +D KG
Sbjct: 191 TPGFEEIYNNTSPTNTTVYCGGFPPNAITDELIQKHFAQFGHINDTRVFKD-----KGYA 245
Query: 176 FVAFSTPEEASRALAEMNGKMIVSKPL 202
F+ F++ E A+RA+ + + P+
Sbjct: 246 FIRFASKESAARAIEGTHNSEVQGHPV 272
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 83
+T ++V NL S + L +F +G +T+A V +D G SK +GFV + + AA
Sbjct: 384 ETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAA 443
Query: 84 KAVEALNGKKFDDREWYVG---------KAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
+AV LNG+ D R+ V + +S + TV + NL
Sbjct: 444 EAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNL 503
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMN 193
Y+ N+ SID +KL ELF FG IT +V+ DP S KG GF+ F+ E A++A+A MN
Sbjct: 504 YVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMN 563
Query: 194 GKMIVSKPLYVAVA 207
G ++ + + V VA
Sbjct: 564 GALVGGEMIIVRVA 577
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N++V NL S L ++F +G I + V+ D G S+ +GFV + + A++A++
Sbjct: 293 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 352
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NG+ + V S + +Q KET LY+ NL S++ ++
Sbjct: 353 RMNGRLVEGTALKVRVTGFPSSEDNS-----QQPSKET----DMAKLYVCNLSLSMNTDR 403
Query: 148 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L LF FG +T+ KV +D +G+SKG GFV +S+P A+ A+ +NG+++ + + V V
Sbjct: 404 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 463
Query: 207 A 207
+
Sbjct: 464 S 464
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 6/193 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V + S T++ +F +G + A + R + +G V F+N AA A++ L
Sbjct: 687 NLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHL 741
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + V A +E Q + NLY+ +L +++E+L
Sbjct: 742 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLI 801
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF G IT KV+ + +G+SKG GFV F+ A+ AL MNG + L V +A
Sbjct: 802 DLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAG 861
Query: 209 RKEERRARLQAQF 221
+ + A F
Sbjct: 862 VHPDAMSSYMAHF 874
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+N++V N+ S + L ++F +G IT A V+ D D S K +GF+ F +++ A KA+
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSID 144
A+NG V + G A V Q +N LYI NL S+
Sbjct: 561 AMNGALVGGEMIIV-----------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMT 609
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+K+ LF+ FG IT KV+ ++ V ++ A++A+ M+G M+ K L V
Sbjct: 610 ADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 662
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 93 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
+FDD++ ++ K Q+ + G +KE VD NLY+ NL S+ KL ELF
Sbjct: 261 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKE-VDN---TNLYVGNLPASVGSHKLIELF 313
Query: 153 SEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
FG I +V+ D +G+S+G GFV +S P AS A+ MNG+++ L V V
Sbjct: 314 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGTALKVRV 368
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ NL S T + + +F +G IT ++ + + V + +A A KAV+ ++
Sbjct: 599 LYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMD 651
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G + + V +R + QA + + + NLY+ + S+ +++ +
Sbjct: 652 GYMVEGKRLVV-------KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFID 704
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
LF FG + ++ R + G V F P A+ A+ ++G I L V VA
Sbjct: 705 LFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLP 759
Query: 211 EERRARLQAQFSQM 224
E A A SQM
Sbjct: 760 AESNAAKGALTSQM 773
>gi|168024568|ref|XP_001764808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684102|gb|EDQ70507.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 42/248 (16%)
Query: 32 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 90
+V NLD ++E L ++F + G + + V +D + +GF+ F + DDA A++ LN
Sbjct: 28 YVGNLDSQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEDDADYAIKILN 87
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
K + V KA + K+++D G NL++ NL +D++ L +
Sbjct: 88 MIKLYGKPIRVNKASQD---------------KKSLDV--GANLFVGNLDPDVDEKLLYD 130
Query: 151 LFSEFGTI-TSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS FG I T+ K+MRDP SG S+G GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDSGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRAITVSYAY 190
Query: 209 RKE---ERRARLQAQF--------SQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
+K+ ER L + ++ RP + S PP + GP LGQ P
Sbjct: 191 KKDTKGERHGTLAERMLASSNPNTTKSRPHTLFASGPPSL----VGPPQLGQGL-----P 241
Query: 258 PAIIPPQA 265
PA PPQA
Sbjct: 242 PA--PPQA 247
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+FV NLD ++ L F +G I T+ +MRD D G S+ FGF+++++ + + A+E
Sbjct: 113 NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDSGNSRGFGFISYDSFEASDSAIE 172
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 122
A+NG+ +R V A KK + + E G + M
Sbjct: 173 AMNGQYLCNRAITVSYAYKK-DTKGERHGTLAERM 206
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 83
+T ++V NL S + L +F +G +T+A V +D G SK +GFV + + AA
Sbjct: 387 ETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAA 446
Query: 84 KAVEALNGKKFDDREWYVG---------KAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
+AV LNG+ D R+ V + +S + TV + NL
Sbjct: 447 EAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNL 506
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMN 193
Y+ N+ SID +KL ELF FG IT +V+ DP S KG GF+ F+ E A++A+A MN
Sbjct: 507 YVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMN 566
Query: 194 GKMIVSKPLYVAVA 207
G ++ + + V VA
Sbjct: 567 GALVGGEMIIVRVA 580
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N++V NL S L ++F +G I + V+ D G S+ +GFV + + A++A++
Sbjct: 296 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 355
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NG+ + R V A S + +Q KET LY+ NL S++ ++
Sbjct: 356 RMNGRLVEGRALEVRVAGFPSSEDNS-----QQPSKET----DMAKLYVCNLSLSMNTDR 406
Query: 148 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L LF FG +T+ KV +D +G+SKG GFV +S+P A+ A+ +NG+++ + + V V
Sbjct: 407 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 466
Query: 207 A 207
+
Sbjct: 467 S 467
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 6/193 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V + S T++ +F +G + A + R + +G V F+N AA A++ L
Sbjct: 690 NLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHL 744
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + V A +E Q + NLY+ +L +++E+L
Sbjct: 745 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLI 804
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF G IT KV+ + +G+SKG GFV F+ A+ AL MNG + L V +A
Sbjct: 805 DLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAG 864
Query: 209 RKEERRARLQAQF 221
+ + A F
Sbjct: 865 VHPDAMSSYMAHF 877
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 8/116 (6%)
Query: 93 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
+FDD++ ++ K Q+ + G +KE VD NLY+ NL S+ KL ELF
Sbjct: 264 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKE-VDN---TNLYVGNLPASVGSHKLIELF 316
Query: 153 SEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
FG I +V+ D +G+S+G GFV +S P AS A+ MNG+++ + L V VA
Sbjct: 317 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGRALEVRVA 372
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+N++V N+ S + L ++F +G IT A V+ D D S K +GF+ F +++ A KA+
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSID 144
A+NG V + G A V Q +N LYI NL S+
Sbjct: 564 AMNGALVGGEMIIV-----------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMT 612
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+K+ LF+ FG IT KV+ ++ V ++ A++A+ M+G M+ K L V
Sbjct: 613 ADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 665
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ NL S T + + +F +G IT ++ + + V + +A A KAV+ ++
Sbjct: 602 LYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMD 654
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G + + V +R + QA + + + NLY+ + S+ +++ +
Sbjct: 655 GYMVEGKRLVV-------KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFID 707
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
LF FG + ++ R + G V F P A+ A+ ++G I L V VA
Sbjct: 708 LFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLP 762
Query: 211 EERRARLQAQFSQM 224
E A A SQM
Sbjct: 763 AESNAAKGALTSQM 776
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
N+ V L ++ T E++K +F G + S ++RD G+S +GFVN+ +DA KA+
Sbjct: 28 NLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAINT 87
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
NG + ++ V A+ S D +G NLY+ L S+ + L
Sbjct: 88 FNGLRLQNKTIKVSFARPSS------------------DAIKGANLYVSGLSKSMTQQDL 129
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYVA 205
+ LF+ +G I + +++ D +G+SKG GF+ F EA RA+ ++NG S+P+ V
Sbjct: 130 ENLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNGTTPKGASEPITVK 189
Query: 206 VAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP 244
A + + P+A + P + +PPGP
Sbjct: 190 FANNPSNNINK------AIPPLAAYLTPTPNLRRFPPGP 222
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 40/227 (17%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
N++V L +S T +DL+ +F YG ITS ++ + G SK GF+ F+ +A +A++
Sbjct: 114 NLYVSGLSKSMTQQDLENLFNAYGQIITSRILCDNITGLSKGVGFIRFDQRSEAERAIQQ 173
Query: 89 LNGK-----------KF-DDREWYVGKA-------------------------QKKSERE 111
LNG KF ++ + KA + R
Sbjct: 174 LNGTTPKGASEPITVKFANNPSNNINKAIPPLAAYLTPTPNLRRFPPGPIHPLSGRFSRY 233
Query: 112 QELKGQF-EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSG 169
L G + G +++ NL ++ L +LF FG + S KV++D +
Sbjct: 234 SPLTGDLGSSVLSANAINGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTN 293
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
KG GFV + +EA A+ +NG + ++ L V+ + +A
Sbjct: 294 KCKGFGFVTMTNYDEAVVAVQSLNGYTLGNRVLQVSFKTNNTKSKAN 340
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 109/206 (52%), Gaps = 19/206 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD+ T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 89 LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQNLN 148
Query: 91 GKKFDDREWYVGKA-QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
G++ E V A Q + +++ G F +++ +L + ++DE L
Sbjct: 149 GRRVHQSEIRVNWAYQSNTTSKEDTSGHFH--------------IFVGDLSNEVNDEVLT 194
Query: 150 ELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A
Sbjct: 195 QAFTSFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWAN 254
Query: 209 RKEERRARLQAQFSQMRPVAMGPSVP 234
+K + AQ ++ V M P+ P
Sbjct: 255 QKGQPS---MAQQQALQQVGMTPTTP 277
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 34/207 (16%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + DA KA+ +
Sbjct: 178 HIFVGDLSNEVNDEVLTQAFTSFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 237
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETV----DKF--QGLN----- 133
++G+ R W K Q ++Q L+ + M T F QG+N
Sbjct: 238 MDGEWLGSRAIRCNWANQKGQPSMAQQQALQ---QVGMTPTTPFGHHHFPTQGINSYEMV 294
Query: 134 ----------LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183
Y+ NL L LF FG + + D +G F+ + E
Sbjct: 295 INQTPAWQTTCYVGNLTPYTTQNDLVPLFQNFGYVVESRFQSD-----RGFAFIKLDSHE 349
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQRK 210
A+ A+ ++NG + +PL + + K
Sbjct: 350 NAAMAICQLNGYNVNGRPLKCSWGKDK 376
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 100/181 (55%), Gaps = 14/181 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ LD+ T+E L++IF G + + ++ D + + +GFV +++ A +A++ LN
Sbjct: 84 LYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQTLN 143
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F +++ +L + ++DE L +
Sbjct: 144 GRRVHQSEIRVNWAYQSNTTNKE----------DTSNHFH---IFVGDLSNEVNDEVLTQ 190
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF EA +AL+ M+G+ + S+ + A +
Sbjct: 191 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNWANQ 250
Query: 210 K 210
K
Sbjct: 251 K 251
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 40/264 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + +A KA+ +
Sbjct: 173 HIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSS 232
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK------------------------GQFEQAMKE 124
++G+ R A +K + + +E + +
Sbjct: 233 MDGEWLGSRAIRCNWANQKGQPSMAQQQAMQAMGMTPTTPYGHHQFPAHGVASYEVILTQ 292
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184
T +Q +Y+ NL + LF FG + + D +G F+ + E
Sbjct: 293 T-PSWQ-TTVYVGNLTPYTTPNDVVPLFQNFGFVVESRFQAD-----RGFAFIKMDSHEN 345
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGP 244
A+ A+ +MNG + +PL + + ++ Q F ++P + + + P +P P
Sbjct: 346 AAMAICQMNGYNVNGRPLKCSWGK---DKTPNAQGGFDPVQPFSPQSA---QAPGFPGTP 399
Query: 245 SGLGQQF--LYGQAPPAIIPPQAG 266
+G Q+ YG P PQAG
Sbjct: 400 TGYYPQYGAQYGGQPGNYGGPQAG 423
>gi|310798412|gb|EFQ33305.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 482
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD+ T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 89 LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLN 148
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F +++ +L + ++DE L +
Sbjct: 149 GRRVHQSEIRVNWAYQSNTSSKE----------DTSNHFH---IFVGDLSNEVNDEILTQ 195
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 196 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQ 255
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + AQ M+ + + P+ P
Sbjct: 256 KGQPSI---AQQQAMQAMGLTPTTP 277
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + DA KA+ +
Sbjct: 178 HIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 237
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELK--------------------GQFEQAMKE 124
++G+ R W K Q ++Q ++ +E + +
Sbjct: 238 MDGEWLGSRAIRCNWANQKGQPSIAQQQAMQAMGLTPTTPFGHHQFPAHGVASYEVVLAQ 297
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184
T +Q Y+ NL + LF FG + + D +G F+ + E
Sbjct: 298 T-PSWQ-TTCYVGNLTPYTTPNDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHES 350
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRK 210
A+ A+ +MNG + +PL + + K
Sbjct: 351 AAMAICQMNGYNVNGRPLKCSWGKDK 376
>gi|187097098|ref|NP_001119609.1| sex-lethal [Acyrthosiphon pisum]
gi|98986311|tpe|CAJ55783.1| TPA: sex-lethal [Acyrthosiphon pisum]
gi|239792967|dbj|BAH72757.1| ACYPI000005 [Acyrthosiphon pisum]
Length = 205
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 109/194 (56%), Gaps = 22/194 (11%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAK 84
T N+ + L +S TD+ L ++F + G I + VM+D G S FGFVNF +DA+K
Sbjct: 6 TSMTNLIINYLPQSMTDKKLHQMFTQIGQIEACRVMKDVKTGYSFGFGFVNFVRPEDASK 65
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+E +NG + +++ V A+ E +K+T NLY++NL SI
Sbjct: 66 AIEVMNGLQVENKRLKVSYARPAGE-----------DIKDT-------NLYVQNLPRSIT 107
Query: 145 DEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKP 201
+ +L++LF+ +G I +++D SG+ +G FV ++ E+A +A+ ++NG ++ ++
Sbjct: 108 ERELEDLFAPYGQIVQKNILKDKYSGLPRGVAFVRYNKKEDAQKAIIQLNGVLLEGCTEH 167
Query: 202 LYVAVAQRKEERRA 215
L V +A+ +++A
Sbjct: 168 LSVKIAEEHGKQKA 181
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 30/208 (14%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAA 83
++ N+FVKNL E ++ L F +G I S V+ D G SK +G+V++E + AA
Sbjct: 93 RSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAA 152
Query: 84 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 143
A+E L+G D +E VG ++ R GQ + N++IKN+
Sbjct: 153 SAIEKLDGMLIDGKEVQVGVFMRRDNR----PGQADWT-----------NVFIKNIPFEW 197
Query: 144 DDEKLKELFSEFGTITSCKVMRDPSGI--SKGSGFVAFSTPEEASRALAEMNGKMI---- 197
++KL+E F FG + S K P + S G GFV F+T E A+ A+ EMN K
Sbjct: 198 TEDKLREEFEGFGEVVSAK----PKEVQGSLGFGFVNFATHEAAAAAVKEMNDKEFTVTE 253
Query: 198 ----VSKPLYVAVAQRKEERRARLQAQF 221
V+K L+V AQ+K ER L+A++
Sbjct: 254 DGEEVTKVLFVGRAQKKAERERELRAKY 281
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 55/66 (83%)
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
ALA+ASPE Q+ ++GE LYPL+ Q + + A K+TGMLLEMD +E+LHLLESPEAL AK+
Sbjct: 547 ALASASPEVQKNMIGERLYPLIHQTQPELAGKITGMLLEMDNSELLHLLESPEALNAKIQ 606
Query: 441 EAMEVL 446
EA++VL
Sbjct: 607 EALQVL 612
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
++++ +L + L +IF G + S V RD +S + +VN+ DA +A+++
Sbjct: 10 SLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALDS 69
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + + +Q+ + G N+++KNL + ID+++L
Sbjct: 70 MNFTEIKGKPCRIMWSQRDPSMRRSGVG----------------NIFVKNLHEGIDNKQL 113
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I SCKV+ D +G+SKG G+V + T E A+ A+ +++G +I K + V V
Sbjct: 114 YDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVF 173
Query: 208 QRKEER 213
R++ R
Sbjct: 174 MRRDNR 179
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 187
F +LYI +L +++ L E+F+ G + S +V RD + S G +V + +A R
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 188 ALAEMNGKMIVSKPLYVAVAQR 209
AL MN I KP + +QR
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQR 87
>gi|383859290|ref|XP_003705128.1| PREDICTED: sex-lethal homolog [Megachile rotundata]
Length = 386
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 26/204 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ + L +S T++DL +F G + S VM+D G S FGFVN+ A+DAA A+
Sbjct: 114 NLIINYLPQSMTEKDLYSLFVTIGPVESCRVMKDYKTGYSYGFGFVNYAKAEDAATAINT 173
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG + ++ V A+ E +KET NLY+ NL +I + ++
Sbjct: 174 LNGLQVQNKRLKVSFARPSGEE-----------IKET-------NLYVTNLPRNITESQI 215
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 205
++FS++G I +++D +G+ +G FV F EEA A+A ++G + S+PL V
Sbjct: 216 DDIFSKYGNIVQKNILKDKITGLPRGVAFVRFDKREEAQEAIARLHGTIPEGGSEPLSVK 275
Query: 206 VAQRKEERRAR----LQAQFSQMR 225
+A+ +++A QA ++Q R
Sbjct: 276 IAEEHGKQKAAYYAGWQAGYNQSR 299
>gi|380478106|emb|CCF43782.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 482
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD+ T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 89 LYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLN 148
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F +++ +L + ++DE L +
Sbjct: 149 GRRVHQSEIRVNWAYQSNTSSKE----------DTSNHFH---IFVGDLSNEVNDEILTQ 195
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 196 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQ 255
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + AQ M+ + + P+ P
Sbjct: 256 KGQPSI---AQQQAMQAMGLTPTTP 277
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + DA KA+ +
Sbjct: 178 HIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 237
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELK--------------------GQFEQAMKE 124
++G+ R W K Q ++Q ++ +E + +
Sbjct: 238 MDGEWLGSRAIRCNWANQKGQPSIAQQQAMQAMGLTPTTPFGHHQFPAHGVASYEVVLAQ 297
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184
T +Q Y+ NL + LF FG + + D +G F+ + E
Sbjct: 298 T-PSWQ-TTCYVGNLTPYTTPNDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHES 350
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRK 210
A+ A+ +MNG + +PL + + K
Sbjct: 351 AAMAICQMNGYNVNGRPLKCSWGKDK 376
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 18/185 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG----KSKCFGFVNFENADDAAKAV 86
++V LD T++ LK+IF G + S ++ D +G K +GFV F++ A +A+
Sbjct: 93 LYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYGFVEFDDPGAAERAM 152
Query: 87 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
+ LNG++ E V A + + +E +T + F +++ +L + ++DE
Sbjct: 153 QTLNGRRIHQSEIRVNWAYQSNSTSKE----------DTSNHFH---IFVGDLSNEVNDE 199
Query: 147 KLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205
L + FS FG+++ +VM D +G S+G GFVAF EA +AL M+G+ + S+ +
Sbjct: 200 VLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRTEADKALNSMDGEWLGSRAIRCN 259
Query: 206 VAQRK 210
A +K
Sbjct: 260 WANQK 264
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 41/267 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + +A KA+ +
Sbjct: 186 HIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRTEADKALNS 245
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQEL------------KGQFEQAMKETVD----- 127
++G+ R W K Q ++Q L F ++ D
Sbjct: 246 MDGEWLGSRAIRCNWANQKGQPSISQQQALVAMGMTPTTAFGHHHFPTHGIQSYDMVAQQ 305
Query: 128 --KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
++Q Y+ NL L LF FG + ++ D +G FV + E A
Sbjct: 306 TPQWQ-TTCYVGNLTPYTTQNDLVPLFQNFGYVLETRLQAD-----RGFAFVKMDSHENA 359
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS 245
+ A+ ++NG + +PL + + + QF P G SVP + P+
Sbjct: 360 ASAICQLNGYNVNGRPLKCSWGKDRPPT-----GQFDNFSP-QQGSSVP-----FNNSPA 408
Query: 246 GLGQQFLYGQAPPAIIPPQAGFGYQQQ 272
G Q+ P P AG G+ QQ
Sbjct: 409 GFFPQYGGPANPMNQGPAPAGRGWDQQ 435
>gi|145347251|ref|XP_001418087.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578315|gb|ABO96380.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 319
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 21/197 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
V+V NLD T+E L ++F + G +T+ V +D + +GFV F N +DA ++ L
Sbjct: 31 VYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEEDAEYGIKIL 90
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V K+ +R E+ G NL+I NL ID++ L
Sbjct: 91 NMVKLFGKPIKVNKSV--GDRRDEV----------------GANLFIGNLDPDIDEKLLY 132
Query: 150 ELFSEFGT-ITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I + K+MRDP +G SKG GFVA+ + E + A+ MNG+ + +K + V A
Sbjct: 133 DTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASDAAIEAMNGQFLCNKQINVQYA 192
Query: 208 QRKEERRARLQAQFSQM 224
+K+ + R +Q ++
Sbjct: 193 YKKDSKGERHGSQAERL 209
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+F+ NLD ++ L F +G I + +MRD D G SK FGFV +++ + + A+E
Sbjct: 116 NLFIGNLDPDIDEKLLYDTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASDAAIE 175
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 128
A+NG+ +++ V A KK + + Q E+ + +++++
Sbjct: 176 AMNGQFLCNKQINVQYAYKKDSKGERHGSQAERLLAQSIER 216
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 185
D+ +Y+ NL + +E L ELF + G +T+ V +D + +G GFV F E+A
Sbjct: 24 DRNAEATVYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEEDA 83
Query: 186 SRALAEMNGKMIVSKPLYV--AVAQRKEERRARL 217
+ +N + KP+ V +V R++E A L
Sbjct: 84 EYGIKILNMVKLFGKPIKVNKSVGDRRDEVGANL 117
>gi|301787247|ref|XP_002929039.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Ailuropoda melanoleuca]
Length = 405
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 64 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 123
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 124 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 158
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +++RD SG S+G GF + E+ +A NGK I + P
Sbjct: 159 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIAHFNGKFIKTPP 212
>gi|308480880|ref|XP_003102646.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
gi|308261080|gb|EFP05033.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
Length = 358
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAK 84
+K +VFV +L + ++E LK F +YG ++ A V+RD KSK +GFV+F N +A
Sbjct: 130 SKHFHVFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAEN 189
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NGK R A +K+ E K FEQ T K ++Y+ N+
Sbjct: 190 AIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNST--KADNTSVYVGNISQQTT 247
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
+ L+E FS +G I +V + ++ FV + E A++A+ EMNGK
Sbjct: 248 ETDLRESFSTYGDIAEVRVFK-----TQRYAFVRYDKKECATKAIMEMNGK 293
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 20 ETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
E V TK +N V+V N+ + TT+ DL++ F YG I V K++ + FV ++
Sbjct: 224 EQVFNSTKADNTSVYVGNISQQTTETDLRESFSTYGDIAEVRVF-----KTQRYAFVRYD 278
Query: 78 NADDAAKAVEALNGKKF 94
+ A KA+ +NGK+
Sbjct: 279 KKECATKAIMEMNGKEL 295
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 16/205 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + A KE D ++++ +L + ++DE L +
Sbjct: 147 GRRVHQSEIRVNWAYQAA----------TSATKE--DTSNHFHIFVGDLSNEVNDEVLTQ 194
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 195 AFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + AQ M V M P+ P
Sbjct: 255 KGQPSI---AQQQAMSAVGMTPTTP 276
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 35/220 (15%)
Query: 21 TVAIKTKFNN---VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNF 76
T A K +N +FV +L DE L + F +G+++ A VM D G+S+ +GFV F
Sbjct: 165 TSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAF 224
Query: 77 ENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKG---------------- 116
+ DA KA+ +++G+ R W K Q ++Q +
Sbjct: 225 RDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAMSAVGMTPTTPFGHHHFPT 284
Query: 117 ----QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 172
+E + +T +Q Y+ NL + LF FG + + D +
Sbjct: 285 HGMQSYEMVVNQT-PAYQ-TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----R 337
Query: 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212
G F+ + E A++A+ +NG + +PL + + K
Sbjct: 338 GFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDKNS 377
>gi|58865940|ref|NP_001012184.1| RNA-binding motif, single-stranded-interacting protein 1 [Rattus
norvegicus]
gi|81909957|sp|Q5PQP1.1|RBMS1_RAT RecName: Full=RNA-binding motif, single-stranded-interacting
protein 1
gi|56269819|gb|AAH87094.1| RNA binding motif, single stranded interacting protein 1 [Rattus
norvegicus]
gi|149022095|gb|EDL78989.1| rCG26906, isoform CRA_c [Rattus norvegicus]
Length = 403
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 121
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 122 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 156
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +V+RD SG S+G GF + E+ + NGK I + P
Sbjct: 157 LENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 18/208 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + L+K+F ++G I S V D +G S +GFV+FE+ + A+E
Sbjct: 132 NIFIKNLPLFFDSKSLEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKT 191
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLG-DSIDDEK 147
NG +++ +VG + +R+ M +T G N+YIKN+ ++ ++
Sbjct: 192 NGLIIGEKKIFVGPFLSRKDRKN-------FGMTKT-----GFTNIYIKNISPENCNETF 239
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+K+LF FG ITS + ++ + +KG FV + PEEA A+ MN K I + LYV A
Sbjct: 240 IKDLFDIFGKITSIYIPKN-NNFTKGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYVGKA 298
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSVPP 235
+ K ER+ LQ +F + + +GP P
Sbjct: 299 ETKIERQRHLQKKFLEKK---IGPIEKP 323
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 50/256 (19%)
Query: 34 KNLDESTT-----------DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 81
KN D+ST +ED++KIF G + S + RD G+ + FV FEN D
Sbjct: 34 KNSDQSTCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKD 93
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ----GLNLYIK 137
A +A+ LN +Y + K + L+ + Q DKF G N++IK
Sbjct: 94 AERALTKLN--------YYFDPEKMK----KPLRLMWYQK-----DKFLLKSGGGNIFIK 136
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL D + L+++F +FG I SCKV D +G S G GFV F + + A+ + NG +I
Sbjct: 137 NLPLFFDSKSLEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLII 196
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQF------ 251
K ++V +++R+ M + + + P + F
Sbjct: 197 GEKKIFVGPFLSRKDRKN-----------FGMTKTGFTNIYIKNISPENCNETFIKDLFD 245
Query: 252 LYGQAPPAIIPPQAGF 267
++G+ IP F
Sbjct: 246 IFGKITSIYIPKNNNF 261
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 1 MLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSA 58
++I +K++FVG FL +++R+ + KT F N+++KN+ E+ + +K +F +G ITS
Sbjct: 194 LIIGEKKIFVGPFLSRKDRKNFGMTKTGFTNIYIKNISPENCNETFIKDLFDIFGKITSI 253
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ ++ + +K F FVN+E ++A A+ +N KK + YVGKA+ K ER++ L+ +F
Sbjct: 254 YIPKNNNF-TKGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF 312
>gi|325089595|gb|EGC42905.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces capsulatus H88]
Length = 492
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ LD T++ L++IF G + S ++ D + K +GFV +++ A +A+ LN
Sbjct: 94 LYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMSTLN 153
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F ++++ +L + ++DE L +
Sbjct: 154 GRRVHQSEIRVNWAYQSNNNNKE----------DTSNHF---HIFVGDLSNEVNDEVLLQ 200
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 201 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQ 260
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + Q + M M PS P
Sbjct: 261 KGQPSISQQQAMAAM---GMTPSTP 282
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F DA KA+ +
Sbjct: 183 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSS 242
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKG------------QFEQAMKETVD----- 127
++G+ R W K Q ++Q + F ++ D
Sbjct: 243 MDGEWLGSRAIRCNWANQKGQPSISQQQAMAAMGMTPSTPFGHHHFPTHGVQSYDMVAAQ 302
Query: 128 --KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
++Q Y+ NL L LF FG + + D +G FV T E A
Sbjct: 303 TPQWQ-TTCYVGNLTPYTTQNDLIPLFQNFGYVVETRFQTD-----RGFAFVKMDTHENA 356
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG-----PSVPPRMPMY 240
+ A+ +++G + +PL + + + QF P G S P P Y
Sbjct: 357 AMAICQLSGYNVNGRPLKCSWGRDRPPT-----GQFEGYSPQQSGTPTFNSSTSPYFPQY 411
Query: 241 PPGPSG 246
GPSG
Sbjct: 412 -SGPSG 416
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
++V NL ++ L +F YG +TS VMRD G SK +GFV + + AA A+ L
Sbjct: 321 LYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQL 380
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + ++ V A S + + + N+Y++NL ++ +KL
Sbjct: 381 NGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLL 440
Query: 150 ELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
LF +G +TS KV D SGISKG GFV FS P +A+ A+ E+NG ++ + + V V
Sbjct: 441 NLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRV 498
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVE 87
+NV+V+NL + L +F YG +TSA V M G SK +GFV F + DAA AV
Sbjct: 423 SNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVI 482
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LNG + R+ V S E A T+ + NLY+ N+ S++ K
Sbjct: 483 ELNGCLVEGRKILVRVRPPSSPVES-------HANNRTLKEIDMSNLYVCNIPSSMNKAK 535
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L ELF FG IT V+ + SKG GFV F+ A+ A+A MNG +I + + V VA
Sbjct: 536 LVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 22/184 (11%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N+FV NL S L ++F +G I + V+ D G SK +GFV + + AA+A++
Sbjct: 229 TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 88 ALNGKKFDDREWYV---GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
+NG+ + R V G S +E ++ LY+ NL +
Sbjct: 289 HMNGRMVEGRMLEVRLAGAPSSGSTKEMDMS-----------------KLYVCNLPLLLH 331
Query: 145 DEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203
++KL +LF +G +TS KVMRD +G+SKG GFV +S P+ A+ A+ ++NG +I K +
Sbjct: 332 EDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKME 391
Query: 204 VAVA 207
V VA
Sbjct: 392 VRVA 395
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
+N++V N+ S L ++F +G IT A+V+ + SK +GFV F ++ AA+AV
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAM 579
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+NG + V A + + + LY+ NL ++ +KL
Sbjct: 580 MNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKL 639
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
LF FG I + + S FV ++ A++AL M+G +I K L V
Sbjct: 640 VSLFMPFGQIDRVVMYAEYS-------FVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 95 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 154
DD++ ++ K Q+ S +G+ ++ G NL++ NL S+ KL ELF
Sbjct: 200 DDQDKHLCKRQELSFSSAHDEGKLKEG--------NGTNLFVGNLPPSLASHKLIELFLP 251
Query: 155 FGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
FG I +V+ D +G SKG GFV +S P A+ A+ MNG+M+ + L V +A
Sbjct: 252 FGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLA 305
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V + + T E L +IF YG I A G +G + + NA AA A++ L
Sbjct: 718 NLYVGRVPSAVTCEQLVQIFCLYGEIVQAKKFDAG------YGMIRYANASSAAAAIDHL 771
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + V A +E + + Q + NLY+ L + +KL
Sbjct: 772 DGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLI 831
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
ELF G IT KV+ D +G+SKG GFV F+ A+ A+ MNG + L V A
Sbjct: 832 ELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAG 891
Query: 209 RKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQA 256
+ A A F + P RM + P + YGQ+
Sbjct: 892 VQPSDMASYMAHFYSY----FTSTDPSRMAVGIPTSD---WSYYYGQS 932
>gi|340729596|ref|XP_003403084.1| PREDICTED: protein sex-lethal-like [Bombus terrestris]
Length = 356
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 26/204 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ + L +S T++DL +F G + S VM+D G S FGFVN+ A+DAA A+
Sbjct: 86 NLIINYLPQSMTEKDLYSLFVTIGPVESCRVMKDYKTGYSYGFGFVNYAKAEDAATAIST 145
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG + ++ V A+ E +KET NLY+ NL +I + ++
Sbjct: 146 LNGLQVQNKRLKVSFARPSGEE-----------IKET-------NLYVTNLPRNITESQI 187
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 205
++FS++G I +++D +G+ +G FV F EEA A+A ++G + S+PL V
Sbjct: 188 DDIFSKYGNIVQKNILKDKLTGLPRGVAFVRFDKREEAQEAIARLHGTIPEGGSEPLSVK 247
Query: 206 VAQRKEERRAR----LQAQFSQMR 225
+A+ +++A QA ++Q R
Sbjct: 248 IAEEHGKQKAAYYAGWQAGYNQSR 271
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF--GFVNFENADDAAKAVEA 88
++V LD T++ LK+IF G + S ++ D + +SK + GFV +++ A +A++
Sbjct: 83 LYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEYDDPGAAERAMQT 142
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG++ +E V A + + +E +T + F ++++ +L + ++DE L
Sbjct: 143 LNGRRVHQQEIRVNWAYQSNTATKE----------DTSNHF---HIFVGDLSNEVNDEVL 189
Query: 149 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG ++ +VM D +G S+G GFVAF EA +AL+ M+G+ + S+ + A
Sbjct: 190 LQAFSAFGNVSEARVMWDMKTGRSRGYGFVAFRDRGEAEKALSSMDGEWLGSRAIRCNWA 249
Query: 208 QRKEERRARLQAQFSQMRPVAMGPSVP 234
+K + Q +QM M P+ P
Sbjct: 250 NQKGQPSFSQQQAMAQM---GMTPTTP 273
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 30/205 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G ++ A VM D G+S+ +GFV F + +A KA+ +
Sbjct: 174 HIFVGDLSNEVNDEVLLQAFSAFGNVSEARVMWDMKTGRSRGYGFVAFRDRGEAEKALSS 233
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELK----------------GQFEQAMKETVD- 127
++G+ R W K Q ++Q + Q Q+ + V
Sbjct: 234 MDGEWLGSRAIRCNWANQKGQPSFSQQQAMAQMGMTPTTPYGHHSFPTQGPQSYETIVSQ 293
Query: 128 --KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
++Q Y+ NL L LF FG +T + D +G F+ + E A
Sbjct: 294 TPQWQ-TTCYVGNLTPYTTQNDLVPLFQNFGYVTETRFQSD-----RGFAFIKMDSHENA 347
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRK 210
+ A+ ++G + +PL + + +
Sbjct: 348 ANAICHLSGYQVNGRPLKCSWGKDR 372
>gi|350411267|ref|XP_003489292.1| PREDICTED: protein sex-lethal-like [Bombus impatiens]
Length = 356
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 26/204 (12%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
N+ + L +S T++DL +F G + S VM+D G S FGFVN+ A+DAA A+
Sbjct: 86 NLIINYLPQSMTEKDLYSLFVTIGPVESCRVMKDYKTGYSYGFGFVNYAKAEDAATAIST 145
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LNG + ++ V A+ E +KET NLY+ NL +I + ++
Sbjct: 146 LNGLQVQNKRLKVSFARPSGEE-----------IKET-------NLYVTNLPRNITESQI 187
Query: 149 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 205
++FS++G I +++D +G+ +G FV F EEA A+A ++G + S+PL V
Sbjct: 188 DDIFSKYGNIVQKNILKDKLTGLPRGVAFVRFDKREEAQEAIARLHGTIPEGGSEPLSVK 247
Query: 206 VAQRKEERRAR----LQAQFSQMR 225
+A+ +++A QA ++Q R
Sbjct: 248 IAEEHGKQKAAYYAGWQAGYNQSR 271
>gi|342870153|gb|EGU73450.1| hypothetical protein FOXB_16088 [Fusarium oxysporum Fo5176]
Length = 474
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 101/181 (55%), Gaps = 14/181 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ LD+ T+E L++IF G + + ++ D + + +GFV +++ A +A++ LN
Sbjct: 86 LYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAAERAMQTLN 145
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F ++++ +L + ++DE L +
Sbjct: 146 GRRVHQSEIRVNWAYQSNTTNKE----------DTSNHF---HIFVGDLSNEVNDEVLLQ 192
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF EA +AL+ M+G+ + S+ + A +
Sbjct: 193 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNWANQ 252
Query: 210 K 210
K
Sbjct: 253 K 253
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 32/206 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + +A KA+ +
Sbjct: 175 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSS 234
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELK------------------------GQFEQAMKE 124
++G+ R A +K + + +E + +
Sbjct: 235 MDGEWLGSRAIRCNWANQKGQPSMAQQQAMQAMGMTPTTPYGHHQFPAHGVASYEVILTQ 294
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184
T +Q +Y+ NL + LF FG + + D +G F+ T E
Sbjct: 295 T-PSWQ-TTVYVGNLTPYTTPNDVVPLFQNFGFVVESRFQAD-----RGFAFIKMDTHEN 347
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRK 210
A+ A+ +MNG + +PL + + K
Sbjct: 348 AAMAICQMNGYNVNGRPLKCSWGKDK 373
>gi|281348070|gb|EFB23654.1| hypothetical protein PANDA_019121 [Ailuropoda melanoleuca]
Length = 383
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 39 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 98
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 99 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 133
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +++RD SG S+G GF + E+ +A NGK I + P
Sbjct: 134 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIAHFNGKFIKTPP 187
>gi|148224229|ref|NP_001090632.1| RNA binding motif, single stranded interacting protein 1 [Xenopus
(Silurana) tropicalis]
gi|113197750|gb|AAI21676.1| LOC100036596 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 62 TNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 121
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 122 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 156
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +++RD SG S+G GF + E+ ++ NGK I + P
Sbjct: 157 LESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGKFIKTLP 210
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 83
+T ++V NL S + L +F +G +T+A V +D G SK +GFV + + AA
Sbjct: 300 ETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAA 359
Query: 84 KAVEALNGKKFDDREWYVG---------KAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
+AV LNG+ D R+ V + +S + TV + NL
Sbjct: 360 EAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNL 419
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEMN 193
Y+ N+ SID +KL ELF FG IT +V+ DP S KG GF+ F+ E A++A+A MN
Sbjct: 420 YVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMN 479
Query: 194 GKMIVSKPLYVAVA 207
G ++ + + V VA
Sbjct: 480 GALVGGEMIIVRVA 493
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87
N++V NL S L ++F +G I + V+ D G S+ +GFV + + A++A++
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
+NG+ + V S + +Q KET LY+ NL S++ ++
Sbjct: 269 RMNGRLVEGTALKVRVTGFPSSEDNS-----QQPSKET----DMAKLYVCNLSLSMNTDR 319
Query: 148 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
L LF FG +T+ KV +D +G+SKG GFV +S+P A+ A+ +NG+++ + + V V
Sbjct: 320 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRV 379
Query: 207 A 207
+
Sbjct: 380 S 380
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 6/193 (3%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N++V + S T++ +F +G + A + R + +G V F+N AA A++ L
Sbjct: 603 NLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHL 657
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
+G + V A +E Q + NLY+ +L +++E+L
Sbjct: 658 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLI 717
Query: 150 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+LF G IT KV+ + +G+SKG GFV F+ A+ AL MNG + L V +A
Sbjct: 718 DLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAG 777
Query: 209 RKEERRARLQAQF 221
+ + A F
Sbjct: 778 VHPDAMSSYMAHF 790
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVE 87
+N++V N+ S + L ++F +G IT A V+ D D S K +GF+ F +++ A KA+
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSID 144
A+NG V + G A V Q +N LYI NL S+
Sbjct: 477 AMNGALVGGEMIIV-----------RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMT 525
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
+K+ LF+ FG IT KV+ ++ V ++ A++A+ M+G M+ K L V
Sbjct: 526 ADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVV 578
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 93 KFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 152
+FDD++ ++ K Q+ + G +KE VD NLY+ NL S+ KL ELF
Sbjct: 177 QFDDQDKHLHKKQEHTPPSFPQDGG---KLKE-VDN---TNLYVGNLPASVGSHKLIELF 229
Query: 153 SEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
FG I +V+ D +G+S+G GFV +S P AS A+ MNG+++ L V V
Sbjct: 230 LPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMNGRLVEGTALKVRV 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ NL S T + + +F +G IT ++ + + V + +A A KAV+ ++
Sbjct: 515 LYITNLPRSMTADKMVNLFAPFGQITKVLMNLE-------YSLVWYADAPSATKAVQHMD 567
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G + + V +R + QA + + + NLY+ + S+ +++ +
Sbjct: 568 GYMVEGKRLVV-------KRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFID 620
Query: 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210
LF FG + ++ R + G V F P A+ A+ ++G I L V VA
Sbjct: 621 LFRPFGRVVQARMFR-----FQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLP 675
Query: 211 EERRARLQAQFSQM 224
E A A SQM
Sbjct: 676 AESNAAKGALTSQM 689
>gi|47226367|emb|CAG09335.1| unnamed protein product [Tetraodon nigroviridis]
Length = 374
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 35/204 (17%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L STTD DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 57 TNLYIRGLSPSTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVT 116
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 117 ALKSTGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 151
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-------- 199
L+ + FG + S +++RD SG S+G GF + E+ ++ NGK I +
Sbjct: 152 LENMLKHFGQVISTRILRDSSGHSRGVGFARMESTEKCEAVISHFNGKFIKTPAGVPAPA 211
Query: 200 KPLYVAVAQRKEERRARLQAQFSQ 223
+PL A +++R + Q +FSQ
Sbjct: 212 EPLLCKFADGGQKKR-QSQNKFSQ 234
>gi|195540047|gb|AAI67880.1| LOC100036596 protein [Xenopus (Silurana) tropicalis]
Length = 399
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 55 TNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 114
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 115 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 149
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +++RD SG S+G GF + E+ ++ NGK I + P
Sbjct: 150 LESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGKFIKTLP 203
>gi|402587503|gb|EJW81438.1| hypothetical protein WUBG_07656, partial [Wuchereria bancrofti]
Length = 337
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 85
K N+ + L ++ T E++ +F G I S ++RD G+S +GFVN+ +DA KA
Sbjct: 83 KATNLIINYLPQNMTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYVRQEDAYKA 142
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
V +LNG + ++ V A+ SE +G NLY+ L ++
Sbjct: 143 VTSLNGLRLQNKTIKVSFARPSSE------------------SIKGANLYVSGLAKTMSQ 184
Query: 146 EKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPL 202
L+ LF FG I + +++ D +GISKG GFV F EA A+ ++NGK+ ++P+
Sbjct: 185 LDLEALFKPFGQIITSRILSDNVTGISKGVGFVRFDRKSEAEDAIDKLNGKIPAGCTEPI 244
Query: 203 YVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
V A + Q Q +Q + P+A+ S+
Sbjct: 245 TVKFANSPAANAQKAQLQIAQAASALMPLALLSSI 279
>gi|225682885|gb|EEH21169.1| nucleolysin TIA-1 [Paracoccidioides brasiliensis Pb03]
Length = 471
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T++ L++IF G + S ++ D + K +GFV +++ A +A+ LN
Sbjct: 102 LYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMATLN 161
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E D ++++ +L + ++DE L +
Sbjct: 162 GRRVHQSEIRVNWAYQSNSNNKE-------------DTSNHFHIFVGDLSNEVNDEVLLQ 208
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 209 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRCNWANQ 268
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + Q + M M P+ P
Sbjct: 269 KGQPSISQQQAMAAM---GMTPTTP 290
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 30/205 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F DA KA+ +
Sbjct: 191 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSS 250
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKG------------QFEQAMKETVD----- 127
++G+ R W K Q ++Q + F ++ D
Sbjct: 251 MDGEWLGSRAIRCNWANQKGQPSISQQQAMAAMGMTPTTPFGHHHFPTHGVQSYDMVVAQ 310
Query: 128 --KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
++Q Y+ NL L LF FG + + D +G FV T E A
Sbjct: 311 TPQWQ-TTCYVGNLTPYTTQNDLVPLFQNFGYVVETRFQAD-----RGFAFVKMDTHENA 364
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRK 210
+ A+ +++G + +PL + + +
Sbjct: 365 AMAICQLSGYNVNGRPLKCSWGKDR 389
>gi|403353256|gb|EJY76164.1| Polyadenylate-binding protein [Oxytricha trifallax]
Length = 680
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 23/225 (10%)
Query: 17 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR---DGDGKSKCFGF 73
Q ++ ++ FNN+++KN + E +++IFG+YGTI S V+M G + F F
Sbjct: 177 QPKDRRELRKSFNNIYIKNFPSNWNKEQIEQIFGKYGTIKSTVIMMGIVQGTDEEAPFAF 236
Query: 74 VNFENADD-------AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 126
V +E+ ++ A A+ N +++D + YV A + REQE K EQ +
Sbjct: 237 VCYEDPENKEYGPKCAQNAITLENDQEYDGFKLYVKAALPMTLREQEKK--IEQNRFKNY 294
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV-MRDPSGISKGSGFVAFSTPEEA 185
K G NLY+KN D +E+L+ F +G I S K+ +D + FV + PE A
Sbjct: 295 KK--GCNLYVKNFPDDTTEEQLQAYFENYGEIESIKLNHKDGKAV---YAFVCYKDPESA 349
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERR-----ARLQAQFSQMR 225
+ A + + K L+++ ++KE R+ AR + F+ +R
Sbjct: 350 AFAKQQSQTETFHGKQLFISFYEQKEVRKIQQEDARDRTDFANLR 394
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 34/165 (20%)
Query: 29 NNVFVKNLDESTT----DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
N + VKNLD+S T DE K+FGE + SA V + D S G V F A +
Sbjct: 103 NVLLVKNLDKSITSQQLDEIFAKVFGE-DAVLSAKVSVNADYSSNGHGQVIFACPQLAEQ 161
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ K + + + Q K R EL+ F N+YIKN + +
Sbjct: 162 AL-----AKAGEFNFQISPYQPKDRR--ELRKSFN-------------NIYIKNFPSNWN 201
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGS------GFVAFSTPE 183
E+++++F ++GTI S +M GI +G+ FV + PE
Sbjct: 202 KEQIEQIFGKYGTIKSTVIMM---GIVQGTDEEAPFAFVCYEDPE 243
>gi|429327508|gb|AFZ79268.1| spliceosome associated protein, putative [Babesia equi]
Length = 311
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 100/188 (53%), Gaps = 19/188 (10%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V N+D +E L ++F + G + + + RD G+ + +GFV FE DDA AV L
Sbjct: 20 LYVGNVDMQVDEELLWELFIQAGVVKNIHIPRDKVTGQHQGYGFVEFETEDDADYAVRIL 79
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K ++ + KA + KE ++ G NL+I N+ + +D++ L
Sbjct: 80 NFVKLYNKPLRLNKASRD---------------KENIEV--GANLFIGNVDEEVDEKLLH 122
Query: 150 ELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG + K++RD + + FV++ + E + ALA MNG+ + +KP++V+ A
Sbjct: 123 DTFSAFGNVLLTKIVRDIDSAGRNAYAFVSYDSFEASDAALAAMNGQFLCNKPIHVSYAY 182
Query: 209 RKEERRAR 216
+K+ + R
Sbjct: 183 KKDTKGER 190
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185
D+ Q LY+ N+ +D+E L ELF + G + + + RD +G +G GFV F T ++A
Sbjct: 13 DRNQEATLYVGNVDMQVDEELLWELFIQAGVVKNIHIPRDKVTGQHQGYGFVEFETEDDA 72
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEER 213
A+ +N + +KPL + A R +E
Sbjct: 73 DYAVRILNFVKLYNKPLRLNKASRDKEN 100
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSK-CFG 72
L K R+ I+ N+F+ N+DE ++ L F +G + ++RD D + +
Sbjct: 91 LNKASRDKENIEVG-ANLFIGNVDEEVDEKLLHDTFSAFGNVLLTKIVRDIDSAGRNAYA 149
Query: 73 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
FV++++ + + A+ A+NG+ ++ +V A KK +
Sbjct: 150 FVSYDSFEASDAALAAMNGQFLCNKPIHVSYAYKKDTK 187
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAK 84
+K +VFV +L + ++E LK F ++G ++ A V+RD KSK +GFV+F N +A
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NGK R A +K+ E K FEQ T K ++Y+ N+
Sbjct: 282 AIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNST--KADNTSVYVGNISQQTT 339
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
D L++LFS +G I ++ + ++ FV + E A++A+ EMNGK
Sbjct: 340 DADLRDLFSTYGDIAEVRIFK-----TQRYAFVRYEKKECATKAIMEMNGK 385
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 180
M+ +D + ++++ +L + +E LK F++FG ++ KV+RD + SKG GFV+F
Sbjct: 215 MEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFP 274
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 224
+ A A+A MNGK I + + A RK R + F Q+
Sbjct: 275 NKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQV 318
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 20 ETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
E V TK +N V+V N+ + TTD DL+ +F YG I + K++ + FV +E
Sbjct: 316 EQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIF-----KTQRYAFVRYE 370
Query: 78 NADDAAKAVEALNGKK 93
+ A KA+ +NGK+
Sbjct: 371 KKECATKAIMEMNGKE 386
>gi|156058654|ref|XP_001595250.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980]
gi|154701126|gb|EDO00865.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T+E L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 91 LYVGGLDPRVTEEVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPGAAERAMQTLN 150
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F ++++ +L + ++DE L +
Sbjct: 151 GRRVHQAEIRVNWAYQSNTSNKE----------DTSNHF---HIFVGDLSNEVNDEVLLQ 197
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GF AF ++A +AL+ M+G+ + S+ + A +
Sbjct: 198 AFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSSMDGEWLGSRAIRCNWANQ 257
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + Q S M M P+ P
Sbjct: 258 KGQPSISQQQAMSAM---GMTPTTP 279
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 41/263 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GF F DA KA+ +
Sbjct: 180 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSS 239
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKG------------QFEQAMKETVD----- 127
++G+ R W K Q ++Q + F ++ D
Sbjct: 240 MDGEWLGSRAIRCNWANQKGQPSISQQQAMSAMGMTPTTPFGHHHFPTHGVQSYDMIVQQ 299
Query: 128 --KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185
++Q Y+ NL + L LF FG + + D +G FV + E A
Sbjct: 300 TPQWQ-TTCYVGNLTPYTTQQDLVPLFQNFGYVVETRFQAD-----RGFAFVKMDSHENA 353
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPS 245
+ A+ +++G + +PL + + K A P A GP+ P G
Sbjct: 354 ALAICQLSGYNVNGRPLKCSWGKDKAPTSAGFDGSQQSYSPQA-GPT--------PGGFP 404
Query: 246 GLGQQFL--YGQAPPAIIPPQAG 266
G + YG PP P AG
Sbjct: 405 GTPNAYFPQYGGMPPQAGPQSAG 427
>gi|149022096|gb|EDL78990.1| rCG26906, isoform CRA_d [Rattus norvegicus]
Length = 388
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 47 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 106
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 107 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 141
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +V+RD SG S+G GF + E+ + NGK I + P
Sbjct: 142 LENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 195
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 90 LYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGSAERAMQTLN 149
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F +++ +L + ++DE L +
Sbjct: 150 GRRVHQAEIRVNWAYQSNNTNKE----------DTSNHFH---IFVGDLSNEVNDEVLLQ 196
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF EA +AL+ M+G+ + S+ + A +
Sbjct: 197 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRCNWANQ 256
Query: 210 K 210
K
Sbjct: 257 K 257
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 38/245 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F + +A KA+ +
Sbjct: 179 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSS 238
Query: 89 LNGKKFDDREWYVGKAQKKSE----------------------REQELKGQFEQAMKETV 126
++G+ R A +K + G M
Sbjct: 239 MDGEWLGSRAIRCNWANQKGQPSIAQQQAMQQMGMTPTTPYGHHHFPTHGVHSYDMIVNQ 298
Query: 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
Y+ NL L LF FG + + D +G F+ T E A+
Sbjct: 299 TPAWQTTCYVGNLTPYTTQNDLVPLFQNFGFVVESRFQAD-----RGFAFIKMDTHENAA 353
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSG 246
A+ ++NG + +PL + Q + QAQF + A P + P YP PS
Sbjct: 354 MAICQLNGYNVNGRPLKCSTPQAQ-------QAQFDPNQ--AYSPQS-AQTPAYPGTPST 403
Query: 247 LGQQF 251
Q+
Sbjct: 404 YFNQY 408
>gi|213513165|ref|NP_064692.2| RNA-binding motif, single-stranded-interacting protein 1 isoform 3
[Mus musculus]
gi|55976561|sp|Q91W59.1|RBMS1_MOUSE RecName: Full=RNA-binding motif, single-stranded-interacting
protein 1; AltName: Full=Single-stranded DNA-binding
protein MSSP-1
gi|74151115|dbj|BAE27681.1| unnamed protein product [Mus musculus]
Length = 403
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 121
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 122 ALKANGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 156
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +V+RD SG S+G GF + E+ + NGK I + P
Sbjct: 157 LENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 36/271 (13%)
Query: 32 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 90
+V NLD T+E L ++F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
K + V KA + K+++D G NL++ NL +D++ L +
Sbjct: 88 MIKLYGKPIRVNKASQD---------------KKSLDV--GANLFVGNLDPDVDEKLLYD 130
Query: 151 LFSEFGTI-TSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS FG I T+ K+MRDP +G S+G GFV++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 209 RKEERRARLQAQFSQM-----------RPVAMGPSVPPRMPMYPPGPSGLG-----QQFL 252
+K+ + R ++ RP + S PP +P P +G + F
Sbjct: 191 KKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNVPQANGNMGAPMPPRPFA 250
Query: 253 YGQAPPAIIPPQAGFGYQQQLVPGMRPAGAP 283
G PP IP Q P M+ AG P
Sbjct: 251 NGVVPPVPIPAMRPPPPQSGAFPPMQLAGPP 281
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 87
N+FV NLD ++ L F +G I T+ +MRD D G S+ FGFV++++ + + A+E
Sbjct: 113 NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIE 172
Query: 88 ALNGKKFDDREWYVGKAQKKSER 110
A+NG+ +R+ V A KK +
Sbjct: 173 AMNGQYLCNRQITVSYAYKKDTK 195
>gi|154269845|ref|XP_001535826.1| hypothetical protein HCAG_09244 [Ajellomyces capsulatus NAm1]
gi|150409464|gb|EDN04912.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 387
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
+++ LD T++ L++IF G + S ++ D + K +GFV +++ A +A+ LN
Sbjct: 94 LYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNSKGLNYGFVEYDDPGAAERAMSTLN 153
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E D ++++ +L + ++DE L +
Sbjct: 154 GRRVHQSEIRVNWAYQSNNNNKE-------------DTSNHFHIFVGDLSNEVNDEVLLQ 200
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 201 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRCNWANQ 260
Query: 210 KEERRARLQAQFSQMRPVAMGPSVP 234
K + Q + M M PS P
Sbjct: 261 KGQPSISQQQAMAAM---GMTPSTP 282
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+++ A VM D G+S+ +GFV F DA KA+ +
Sbjct: 183 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSS 242
Query: 89 LNGKKFDDR----EWYVGKAQKKSEREQELKG------------QFEQAMKETVDKFQG- 131
++G+ R W K Q ++Q + F ++ D
Sbjct: 243 MDGEWLGSRAIRCNWANQKGQPSISQQQAMAAMGMTPSTPFGHHHFPTHGVQSYDMVAAQ 302
Query: 132 -----LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
Y+ NL L LF FG + + D +G FV T E+
Sbjct: 303 TPQWQTTCYVGNLTPYTTQNDLIPLFQNFGYVVETRFQTD-----RGFRFVKMDTHEKCC 357
Query: 187 R 187
Sbjct: 358 H 358
>gi|312092240|ref|XP_003147268.1| RNA-binding protein [Loa loa]
Length = 383
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKA 85
K N+ + L ++ T E++ +F G I S ++RD G+S +GFVN+ +DA KA
Sbjct: 16 KATNLIINYLPQNMTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYIRQEDAYKA 75
Query: 86 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 145
V +LNG + ++ V A+ SE +G NLY+ L ++
Sbjct: 76 VTSLNGLRLQNKTIKVSFARPSSE------------------SIKGANLYVSGLAKTMSQ 117
Query: 146 EKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPL 202
L+ LF FG I + +++ D +GISKG GFV F EA A+ ++NGK+ ++P+
Sbjct: 118 LDLEALFKPFGQIITSRILSDNVTGISKGVGFVRFDRKSEAEDAIEKLNGKIPAGCTEPI 177
Query: 203 YVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV 233
V A + Q Q +Q + P+A+ S+
Sbjct: 178 TVKFANSPAANAQKAQLQIAQAASALMPLALLSSI 212
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 89
+FV NL T D L ++FG +G + S +++D GK K +GFV +DA A+ +L
Sbjct: 298 IFVYNLPPETEDAVLWQLFGPFGAVLSVKIIKDFSTGKCKGYGFVTMGQYEDAVTAITSL 357
Query: 90 NGKKFDDREWYV 101
NG + +R V
Sbjct: 358 NGTQLGNRTLQV 369
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 189
G +++ NL +D L +LF FG + S K+++D +G KG GFV E+A A+
Sbjct: 295 GWCIFVYNLPPETEDAVLWQLFGPFGAVLSVKIIKDFSTGKCKGYGFVTMGQYEDAVTAI 354
Query: 190 AEMNGKMIVSKPLYVA 205
+NG + ++ L V+
Sbjct: 355 TSLNGTQLGNRTLQVS 370
>gi|149022092|gb|EDL78986.1| rCG26906, isoform CRA_a [Rattus norvegicus]
Length = 401
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N++++ L +TTD+DL K+ YG I S + D K K +GFV+F++ A KAV
Sbjct: 60 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 119
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
AL +AQ ++EQ+ NLYI NL S+D+++
Sbjct: 120 ALKASGV--------QAQMAKQQEQD-----------------PTNLYISNLPLSMDEQE 154
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
L+ + FG + S +V+RD SG S+G GF + E+ + NGK I + P
Sbjct: 155 LENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 208
>gi|390598508|gb|EIN07906.1| hypothetical protein PUNSTDRAFT_88604 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 343
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 35/266 (13%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 89
V++ NLDE TD + ++ + G + + + +D + + +GF F +DA A + +
Sbjct: 14 VYLGNLDERCTDALIWELMIQAGPVVNVHLPKDRISMAHQGYGFCEFLTEEDAEYACKIM 73
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N K + V KA K+ +D G NL+I NL +++D+ L
Sbjct: 74 NQIKLWGKPIRVNKASSD---------------KKQLDV--GANLFIGNLDENVDERVLY 116
Query: 150 ELFSEFGTI-TSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
+ FS FG I T+ K+ RDPS G SKG GFV+++ E + A+ MNG+ +++KP+ V A
Sbjct: 117 DTFSAFGVISTTAKIARDPSTGQSKGYGFVSYTDFESSDAAIESMNGQFLMNKPITVQYA 176
Query: 208 QRKE----------ERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
+K+ ER QA+ + PVA + P M+ G G + GQ
Sbjct: 177 FKKDGKGERHGTPAERLLAAQARKNNALPVAARTAAP---GMFAAGRPGFPGPYQPGQFA 233
Query: 258 PAI--IPPQAGFGYQQQLVPGMRPAG 281
A+ PP GF QQ +VPG+ P G
Sbjct: 234 GALAQPPPPPGFTPQQTVVPGVPPVG 259
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 87
N+F+ NLDE+ + L F +G I T+A + RD G+SK +GFV++ + + + A+E
Sbjct: 100 NLFIGNLDENVDERVLYDTFSAFGVISTTAKIARDPSTGQSKGYGFVSYTDFESSDAAIE 159
Query: 88 ALNGKKFDDREWYVGKAQKK 107
++NG+ ++ V A KK
Sbjct: 160 SMNGQFLMNKPITVQYAFKK 179
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90
++V LD T++ L++IF G + S ++ D + + +GFV +++ A +A++ LN
Sbjct: 95 LYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNHRGYNYGFVEYDDPGAAERAMQTLN 154
Query: 91 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150
G++ E V A + + +E +T + F +++ +L + ++DE L +
Sbjct: 155 GRRVHQNEIRVNWAYQSNNANKE----------DTSNHFH---IFVGDLSNEVNDEVLWQ 201
Query: 151 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS FG+I+ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 202 AFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRCNWANQ 261
Query: 210 K 210
K
Sbjct: 262 K 262
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 31/215 (14%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++FV +L DE L + F +G+I+ A VM D G+S+ +GFV F DA KA+ +
Sbjct: 184 HIFVGDLSNEVNDEVLWQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSS 243
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF-------QGLN-------- 133
++G+ R A +K + + +Q + G++
Sbjct: 244 MDGEWLGSRAIRCNWANQKGQPSIHQQQAMQQMGMTPTTPYGHHHFPTHGIHSYDMVVNQ 303
Query: 134 -------LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186
Y+ NL L LF FG + C++ D +G F+ + E A+
Sbjct: 304 TPAWQTTCYVGNLTPYTTQNDLVPLFQNFGYVVECRMQAD-----RGFAFIKMDSHENAA 358
Query: 187 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
A+ ++NG M+ +PL + + +R QF
Sbjct: 359 MAICQLNGYMVNGRPLKCSWGK---DRNPNHHQQF 390
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,569,710,731
Number of Sequences: 23463169
Number of extensions: 359527222
Number of successful extensions: 1374520
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8183
Number of HSP's successfully gapped in prelim test: 21343
Number of HSP's that attempted gapping in prelim test: 1271424
Number of HSP's gapped (non-prelim): 78143
length of query: 472
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 326
effective length of database: 8,933,572,693
effective search space: 2912344697918
effective search space used: 2912344697918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)