BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012034
(472 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 314/467 (67%), Positives = 372/467 (79%), Gaps = 24/467 (5%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
ML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG ITSAVV
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSERE EL+ ++EQ
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180
+KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TS KVMRDP+G SKGSGFVAF+
Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366
Query: 181 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM PSV PRMP+Y
Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVY 426
Query: 241 PPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQR 300
PPG G+GQQ YGQAPPA+IPPQ G+GYQQQLVPGMRP G P+P+FF+P+V QQ
Sbjct: 427 PPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPG 486
Query: 301 PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGA 360
R G +Q +QQ P+M QM PRG +RYP GR G +P P DMG
Sbjct: 487 G--GRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGDVP-PYDMGN 534
Query: 361 GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEM 420
+ P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEM
Sbjct: 535 NM---------PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEM 585
Query: 421 DQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 467
DQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+
Sbjct: 586 DQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 12/194 (6%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLDES + L F +G I S V D G+SK +GFV + N + A KA+E L
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG ++ ER+ T +K + N+Y+KNL +S D+ LK
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERD------------STANKTKFTNVYVKNLAESTTDDDLK 232
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
F E+G ITS VM+D G SKG GFV F ++A+RA+ +NG K YV AQ+
Sbjct: 233 NAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK 292
Query: 210 KEERRARLQAQFSQ 223
K ER L+ ++ Q
Sbjct: 293 KSERETELRVRYEQ 306
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 23 AIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENA 79
A T+F N ++V +LD + TD L FG+ GT+ + V RD +S +G+VNF N
Sbjct: 28 ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP 87
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
DAA+A++ LN + V + + + G N++IKNL
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----------------NIFIKNL 131
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
+SID + L + FS FG I SCKV D SG SKG GFV ++ E A +A+ ++NG ++
Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191
Query: 200 KPLYVAVAQRKEER 213
K +YV R++ER
Sbjct: 192 KQVYVGPFLRRQER 205
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/466 (50%), Positives = 301/466 (64%), Gaps = 39/466 (8%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SA
Sbjct: 199 MLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VVMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +F
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA
Sbjct: 319 EQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR------------- 425
Query: 239 MYPPGP-SGLG-----------QQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMP 285
PGP SG Q GQ +++P Q G+G+Q Q +PGMRP P
Sbjct: 426 --APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-G 482
Query: 286 NFFV--PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPL--GRNMQD 341
NF V P+ Q Q G R G RRGA VQQ Q +M H+ P G Y GRN D
Sbjct: 483 NFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMD 541
Query: 342 FPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPL 401
G + + I + A + +PI+ L+++LA+ASP + +LGE LYPL
Sbjct: 542 SSVPQGILPPIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPL 598
Query: 402 VEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447
VE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 599 VERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ ER A E + N+Y+KNL I +++L+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER----------ARDENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F +FG I+S VMRD SG S+ GFV F E A+ A+ +MNG + LYV AQ+
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ +F Q R
Sbjct: 307 KSEREEELRRKFEQER 322
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 21 TVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79
VA +T N+ ++ +LD T+ L +F + S V RD + +S + ++NF N
Sbjct: 40 VVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNP 99
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 139
+DA +A+EALN DR + + + KG N++IKNL
Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKG----------------NIFIKNL 143
Query: 140 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199
SID++ L E FS FGTI SCKV D +G SKG GFV F E A A+ ++NG ++
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 200 KPLYVAVAQRKEER 213
K ++V R++ER
Sbjct: 204 KQVFVGHFIRRQER 217
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY +L + + L +LF + S +V RD + S G ++ FS P +A RA+ +
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N + +P+ + ++ R R
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR 131
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 244/484 (50%), Positives = 320/484 (66%), Gaps = 26/484 (5%)
Query: 1 MLINDKQVFVGHFLRKQER---ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 57
ML+NDKQVFVGHF+R+Q+R E+ A+ + F NV+VKNL + TD++LKK FG+YG I+S
Sbjct: 209 MLLNDKQVFVGHFVRRQDRARSESGAVPS-FTNVYVKNLPKEITDDELKKTFGKYGDISS 267
Query: 58 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
AVVM+D G S+ FGFVNF + + AA AVE +NG + YVG+AQKKS+RE+EL+ +
Sbjct: 268 AVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRK 327
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 177
FEQ +K QG NLY+KNL DS++DEKLKE+FSE+G +TSCKVM + G+S+G GFV
Sbjct: 328 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 387
Query: 178 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR-PVAMGPSVPPR 236
A+S PEEA A+ EMNGKMI KPLYVA+AQRKEER+A LQ+ F+Q+R P M P VP
Sbjct: 388 AYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP-VPSP 446
Query: 237 MP---MYPPGP--SGLGQQFLYGQAPPAIIPPQ-AGFGYQQQLVPGMRPAGAPMPNFFV- 289
M +PPG SG G ++P Q G+GYQ Q +PGMRP P PNF +
Sbjct: 447 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMP 505
Query: 290 -PVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
P+ Q Q G R G RRGA +QQ Q Q + +A R+ G + + A
Sbjct: 506 FPLQRQTQPGPRVGFRRGANNMQQQFQ------QQQMLQQNASRFMGGAGNRRNGMEASA 559
Query: 349 -GSMLPVPVDMGA---GIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQ 404
++P+P++ A P+R + P+ I+ L++ LA ASP++ +LG+ LYPLVEQ
Sbjct: 560 PQGIIPLPLNASANSHNAPQR-SHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQ 618
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASL 464
E AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +L
Sbjct: 619 QEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFAL 678
Query: 465 SLNE 468
S +E
Sbjct: 679 SSSE 682
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD S ++ L + F +GTI S V D G+SK +GFV FE + A A++ L
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ +VG ++ +R + G V F N+Y+KNL I D++LK
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESG--------AVPSFT--NVYVKNLPKEITDDELK 256
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ F ++G I+S VM+D SG S+ GFV F +PE A+ A+ +MNG + LYV AQ+
Sbjct: 257 KTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 316
Query: 210 KEERRARLQAQFSQMR 225
K +R L+ +F Q R
Sbjct: 317 KSDREEELRRKFEQER 332
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 16/185 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88
++++V +LD S + L +F + + + V RD +S + +VNF N +DA++A+E+
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN DR + + + KG N++IKNL SID++ L
Sbjct: 119 LNYAPIRDRPIRIMLSNRDPSTRLSGKG----------------NVFIKNLDASIDNKAL 162
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
E FS FGTI SCKV D G SKG GFV F E A A+ ++NG ++ K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 209 RKEER 213
R+++R
Sbjct: 223 RRQDR 227
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192
+LY+ +L S+++ L +LF++ + + +V RD + S G +V F+ PE+ASRA+ +
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 119
Query: 193 NGKMIVSKPLYVAVAQRKEERR 214
N I +P+ + ++ R R
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTR 141
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 281/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 198/479 (41%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT P P A P R + +
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAA-------AAAAATPAVRTVPQY 511
Query: 343 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-------PITALSTALANASPEQQRTLLG 395
+ G + P P+ ++ QP P+TA + LA+A P++Q+ +LG
Sbjct: 512 KYAAGVRN----PQQHLNAQPQ--VTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLG 563
Query: 396 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
E L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 308 bits (788), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 197/476 (41%), Positives = 279/476 (58%), Gaps = 36/476 (7%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK++FG++G S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P P
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
Query: 239 MYPPGPSGLGQQFL-YGQAPPAIIPP--------------QAGFGYQQQLVPG-MRPAGA 282
P PSG + Q A PP Q + Q +PG +RPA A
Sbjct: 400 YQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA-A 458
Query: 283 PMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDF 342
P P F + Q + +R A QT M PR A ++
Sbjct: 459 PRPPFSTMRPASSQVPRVMSTQRVANTSTQT----------MGPRPAAAATAATPAVRTV 508
Query: 343 P-FDMGAGSMLP---VPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESL 398
P + AG P + + + V P+TA + LA+A P++Q+ +LGE L
Sbjct: 509 PQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERL 566
Query: 399 YPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A
Sbjct: 567 FPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKELF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K +YV AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 197/502 (39%), Positives = 285/502 (56%), Gaps = 70/502 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV- 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + GP +
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLG 398
Query: 234 ---------------PPRMPMYPPGPSG---LGQQFLYGQA------PPA----IIPPQA 265
PP Y P P Q+ Q+ PPA +PP+
Sbjct: 399 SFQQPANYFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRR 458
Query: 266 GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMP 325
+ M+ A +P V Q+ G + Q + MPH
Sbjct: 459 ----MSSNISTMKQASTQVPR----VAPHSQRVANIGTQTAGARAQVNPSIMRTMPH--- 507
Query: 326 PRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALAN 384
Y+Y RN+Q + ++ V M GQ P+TA ++LA+
Sbjct: 508 -----YKYSCAVRNVQPIGTNTHLQQVMEPAVLMQ----------GQE-PLTA--SSLAS 549
Query: 385 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 444
A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+
Sbjct: 550 APPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVA 609
Query: 445 VLRSVAQQQANNPADQLASLSL 466
VL++ QA + + A SL
Sbjct: 610 VLQA---HQAKENSQKSAQQSL 628
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++L+E+FS FG S KVM D +G S+G GFV + EEA +A++EMNGK + + +YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRIERQGELKRKFEQIK 284
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL +SID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 304 bits (779), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 203/495 (41%), Positives = 281/495 (56%), Gaps = 57/495 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN E DE LK+ FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKS+ FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F+ FG+ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPP-----AIIPPQAGFGYQQQLVP-------GMRP------A 280
Y P PS + PP A PP G QL P G RP A
Sbjct: 398 PYQPPPSS----YFMAAIPPAQNRAAYYPP----GQIAQLRPSPRWTAQGARPHPFQNMA 449
Query: 281 G-----APMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGH----AY 331
G AP P F + Q + +R A QT P P Y
Sbjct: 450 GAIRPSAPRPPTFSTMRPTSQVPRVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQY 509
Query: 332 RYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQ 390
+Y G RN Q +M V + GQ P+TA + LA A P++Q
Sbjct: 510 KYAAGVRNTQQHLNTQPQVAMQQPAVHVQ----------GQE-PLTA--SMLAAAPPQEQ 556
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450
+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct: 557 KQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA-- 614
Query: 451 QQQANNPADQLASLS 465
QA A ++ S +
Sbjct: 615 -HQAKEAAQKVVSAT 628
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE+LKE F ++G S KVM D G S+G GFV+F E+A +A+ +MNGK +
Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDL 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 198/493 (40%), Positives = 279/493 (56%), Gaps = 52/493 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ L++IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ F +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPVAMGPSV- 233
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + GP +
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMP-GPLLG 398
Query: 234 ---------------PPRMPMYPPGPSG----LGQQFLYGQAPPAIIPPQAGFGYQQQLV 274
PP Y P P Q + PP PP Q
Sbjct: 399 SFQQPANYFLSAMPQPPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQPPTPLMRAVQPRR 458
Query: 275 PGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYP 334
+ + VP V+Q Q G + AG Q P M MP Y+Y
Sbjct: 459 MSSNISTMKQASTQVPRVAQHSQRVANIGTQTAGARAQVN---PSMMRTMP----HYKYS 511
Query: 335 LG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 393
G RN+Q ++ V M GQ P+TA + LA A P++Q+ +
Sbjct: 512 CGVRNVQPIVSSTHLQQVMEPAVLMQ----------GQE-PLTA--SLLAGAPPQEQKQM 558
Query: 394 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
LGE +YP++ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ Q
Sbjct: 559 LGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQ 615
Query: 454 ANNPADQLASLSL 466
A A + A SL
Sbjct: 616 AKENAQKSAQPSL 628
Score = 158 bits (399), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLDES ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++L+E+FS FG S KVM D SG S+G GFV + EEA +A++EMNGK + + +YV
Sbjct: 204 DKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER++ L+ +F Q++
Sbjct: 264 GRAQKRIERQSELKRKFEQIK 284
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL +SID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDESIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 265/470 (56%), Gaps = 49/470 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER + ++ +F NV++KN+D TD + + + +G S
Sbjct: 197 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISV 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD G SK FGFVN+EN + A KAV+ LN K+ + ++ Y G+AQ KSERE ELK
Sbjct: 257 ALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSH 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLY+KNL D DD++L+ F FGTITS KVMRD SG+S+G GFV
Sbjct: 317 EEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+P+EA++A++EMNGKMI +KPLYVA+AQRK+ RR L++Q +Q M +
Sbjct: 377 YSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRM------QYG 430
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG G Q +YG PP G+G Q +PGM P PM + P Q
Sbjct: 431 AGFPGMQGYMGQPMYG------YPPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQ 479
Query: 299 QRPGGRRGAGPVQQTQQPLP--IMPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAG 349
RP QPLP + + MPP+ G+ R P G + P G
Sbjct: 480 SRPR-------FNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPR 531
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGE 396
+ P PV G+P G MP A LA A+P +Q+ +LGE
Sbjct: 532 NGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGE 591
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 592 ALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+S ++ L F +G I S V D +GKS+ F FV++
Sbjct: 123 QRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYS 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER---EQELKGQFEQAMKETVDKFQGLNL 134
+ A A++A+NG +D++ YVG K ER +EL+ QF N+
Sbjct: 183 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF-------------TNV 229
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D + ++L FG S + RD G+SKG GFV + E A +A+ E+N
Sbjct: 230 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNE 289
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + K LY AQ K ER A L+ + R
Sbjct: 290 KEVNGKKLYAGRAQTKSEREAELKKSHEEKR 320
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN K + + + Q + A+++T QG N++IKNL SID++ L
Sbjct: 107 LNYSLI------------KGQSCRIMWSQRDPALRKT---GQG-NIFIKNLDQSIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ L+AQF+ +
Sbjct: 211 GKKERLSKVEELRAQFTNV 229
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 265/470 (56%), Gaps = 49/470 (10%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + K+ER + ++ +F NV++KN+D TD + + + +G S
Sbjct: 197 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISV 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD G SK FGFVN+EN + A KAV+ LN K+ + ++ Y G+AQ KSERE ELK
Sbjct: 257 ALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSH 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ E K G+NLY+KNL D DD++L+ F FGTITS KVMRD SG+S+G GFV
Sbjct: 317 EEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S+P+EA++A++EMNGKMI +KPLYVA+AQRK+ RR L++Q +Q M +
Sbjct: 377 YSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRM------QYG 430
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
PG G Q +YG PP G+G Q +PGM P PM + P Q
Sbjct: 431 AGFPGMQGYMGQPMYG------YPPMPGYG---QPMPGMPPVRGPMMGY--PGAPQNMMQ 479
Query: 299 QRPGGRRGAGPVQQTQQPLP--IMPHQMPPR-------GHAYRYPLGRNMQDFPFDMGAG 349
RP QPLP + + MPP+ G+ R P G + P G
Sbjct: 480 SRPR-------FNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVR-PGGARIPAAPNANGPR 531
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGE 396
+ P PV G+P G MP A LA A+P +Q+ +LGE
Sbjct: 532 NGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGE 591
Query: 397 SLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446
+LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 592 ALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD+S ++ L F +G I S V D +GKS+ F FV++
Sbjct: 123 QRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYS 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSER---EQELKGQFEQAMKETVDKFQGLNL 134
+ A A++A+NG +D++ YVG K ER +EL+ QF N+
Sbjct: 183 TGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQF-------------TNV 229
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + D + ++L FG S + RD G+SKG GFV + E A +A+ E+N
Sbjct: 230 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNE 289
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + K LY AQ K ER A L+ + R
Sbjct: 290 KEVNGKKLYAGRAQTKSEREAELKKSHEEKR 320
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G + S V RD +S + +VN+ NA D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN K + + + Q + A+++T QG N++IKNL SID++ L
Sbjct: 107 LNYSLI------------KGQSCRIMWSQRDPALRKT---GQG-NIFIKNLDQSIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D +G S+G FV +ST E A A+ +NG ++ K +YV
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ L+AQF+ +
Sbjct: 211 GKKERLSKVEELRAQFTNV 229
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 206/547 (37%), Positives = 282/547 (51%), Gaps = 114/547 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D DE+ +K+F ++G ITSA
Sbjct: 193 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 253 TLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD------------ 166
E A E K+QG+NLY+KNL D +DD+KL+ELF +GTITS KVMRD
Sbjct: 313 EAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESE 372
Query: 167 ---------------------------------------PSGISKGSGFVAFSTPEEASR 187
P G SKG GFV FS+P+EAS+
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASK 432
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV--------------AMGPSV 233
A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + M P+V
Sbjct: 433 AVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAV 492
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
Y PG G F+ G + PPQ G PG P P P
Sbjct: 493 -----FYGPGQQG----FIPGAQRGGMFPPQPGMMMGMPGRPGQYP--GPFP-------- 533
Query: 294 QGQQGQRPGGRRGAGPVQQTQ---QPLPIMPHQMPPRGHAYRYPL--------------- 335
GQQG RG GP QQ Q LP+ Q P + YP+
Sbjct: 534 -GQQGG-----RGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVP 587
Query: 336 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITAL----STALANASPEQQR 391
G G +P+ M G R +VGQP P T + + AL+ A P+QQ+
Sbjct: 588 GMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQK 647
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V +
Sbjct: 648 QMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMK 707
Query: 452 QQANNPA 458
+++ PA
Sbjct: 708 NKSDEPA 714
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 119 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYE 178
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 179 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNI 225
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ ++DE+ ++LF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 286 KEVRSQKLYVGRAQKKHEREEELRKQYEAAR 316
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 125 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183
T + +LY+ L S+ + L ELFS G + S +V RD + S G +V ++
Sbjct: 35 TTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTA 94
Query: 184 EASRALAEMNGKMIVSKPLYVAVAQR 209
RAL E+N +I KP + +QR
Sbjct: 95 HGERALDELNYTLIKGKPCRIMWSQR 120
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 301 bits (770), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 198/495 (40%), Positives = 279/495 (56%), Gaps = 56/495 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F NV++KN E D+ LK+IF +G S
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D G+S+ FGFVN+ N ++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +F
Sbjct: 221 KVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E ++++QG+NLY+KNL D IDD++L++ FS +GTITS KVM + G SKG GFV
Sbjct: 281 EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ----MRPV---AMGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q MR + +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVP- 290
P P P + F Y P A + P + Q P +P AP+ P
Sbjct: 400 FQQPANYFLPTMPQPSNRAF-YSPNPVAPVRPAPQWASHQSRPPQYQPP-APLMRAVPPR 457
Query: 291 ------------------VVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYR 332
V Q Q+ G + Q + MPH Y+
Sbjct: 458 RMHSNISTMKQASTQVPRVPLQSQRVANIGTQTAGARAQVNASIMRAMPH--------YK 509
Query: 333 YPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQR 391
Y G RN+Q +L V M GQ P+TA + LA A ++Q+
Sbjct: 510 YSCGVRNVQPIGSSAHLQQVLEPAVLMQ----------GQE-PLTA--SLLAAAPLQEQK 556
Query: 392 TLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451
+LGE +YPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++
Sbjct: 557 QILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA--- 613
Query: 452 QQANNPADQLASLSL 466
QA A + A SL
Sbjct: 614 HQAKESAPKSAPQSL 628
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ NVF+KNLD+S ++ L F +G I S V+ D G S+ +GFV+FE + A +
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANR 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG +DR+ +VG + + ERE E + + N+YIKN G+ +D
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKV----------MEFTNVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
D++LKE+FS FG S KVM D SG S+G GFV + EEA +A+ EMNGK + + +YV
Sbjct: 204 DKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F Q++
Sbjct: 264 GRAQKRIERQGELKRKFEQIK 284
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
++++ +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + R + +Q+ + G N++IKNL DSID++ L
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVG----------------NVFIKNLDDSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V +
Sbjct: 116 YDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 209 RKEER 213
+ ER
Sbjct: 175 SRRER 179
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 210/539 (38%), Positives = 280/539 (51%), Gaps = 105/539 (19%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV+VKN+D+ TT+E+ + +F ++G ITSA
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSA 265
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + D+AA AVEALN K F ++ YVG+AQKK ERE+EL+ Q
Sbjct: 266 TLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQ 325
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD----------- 166
+E A E K+QG+NLYIKNL D IDDEKL+ELFS +GTITS KVMRD
Sbjct: 326 YEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEK 385
Query: 167 ------------------------------------------PSGISKGSGFVAFSTPEE 184
P G SKG GFV FS+P+E
Sbjct: 386 EAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDE 445
Query: 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPPRMPMYP 241
AS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + +R + P
Sbjct: 446 ASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPFMQ 505
Query: 242 PGPSGLGQQFLYGQAPPAIIPPQ-AGFGYQQ--QLVPGMRPAGAPM-------------- 284
P YG IP Q G +QQ ++PGM P G
Sbjct: 506 PA-------VFYGPGQQNFIPNQRGGMPFQQPGMVIPGM-PGGRHGQFGGFPGQQGGRGM 557
Query: 285 -PNFFVPVVSQGQQGQR-PGGRRGAGPVQQTQQPLPIMPHQMPPRGHAY-RYPLGRNMQD 341
PN +P + G Q P G +GAG P M P G + P G+ M
Sbjct: 558 NPNQQIPPNAYGIGAQGLPMGMQGAGIPNGLN--YPQMGQVQAPFGRGRGQAPSGQGMPP 615
Query: 342 FPFDMGAGSML--PVPVDMGAGIPRRDASVGQPMPITALSTALANASPE----------- 388
MG G +PV G G P + A GQ P A+ NASP
Sbjct: 616 NVQGMGPGGQYGRGMPVQQGMGRPGQ-AGRGQGAPAQAVGQRDENASPNGLTLQVLNAAP 674
Query: 389 --QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
QQ+ +LGE++YP ++ + + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 675 PAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 132 QRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 191
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 192 TAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANF-------------TNV 238
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ +E+ ++LF +FG ITS + RD SG S+G GFV F++ + A+ A+ +N
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ Q+ R
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAAR 330
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ N D +A+E
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 116 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDTAIDNKAL 159
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A A+ +NG ++ K ++V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 219
Query: 209 RKEERRARLQAQFSQMR 225
K++R Q++F +M+
Sbjct: 220 AKKDR----QSKFEEMK 232
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 264/459 (57%), Gaps = 28/459 (6%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVGHF ++ERE A +F N++VKNL ++ L+ +F ++G + S
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VMRD G S+CFGFVNFE ++A KAV +NGK+ R Y G+AQK+ ER+ ELK +F
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL DSIDD+KL++ FS +G ITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF----SQMRPVA---MGP 231
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ S MR ++ +G
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGS 399
Query: 232 SVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPV 291
P P P Q YG P + P Q + Q RP+ A M V
Sbjct: 400 FQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQPAPRWTSQ---PPRPSCASMVRPPVVP 454
Query: 292 VSQGQQ--GQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
R + V TQ+ I P G P GR + A
Sbjct: 455 RRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTP-GRPLLPCKCSSAAH 513
Query: 350 SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDA 409
S V + IP ++ P+TA + LA A +Q+ ++GE LYPL+ +
Sbjct: 514 STYRVQ-EPAVHIPGQE-------PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQL 563
Query: 410 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct: 564 AGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNL++S ++ L F +G I S V D G S+ FGFV+FE + A +
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQ 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG +DR+ +VG + + ERE EL +A++ T N+Y+KNL +D
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGA---RALEFT-------NIYVKNLPVDVD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L++LFS+FG + S KVMRD SG S+ GFV F EEA +A+ MNGK + + LY
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ++ ER+ L+ +F QM+
Sbjct: 264 GRAQKRVERQNELKRRFEQMK 284
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S V RD +S + ++NF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD---KFQGL-NLYIKNLGDSID 144
+N + LKGQ + M D + G+ N++IKNL DSID
Sbjct: 72 MNF--------------------EMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSID 111
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
++ L + FS FG I SCKV D G S+G GFV F T E A +A+ MNG ++ + ++V
Sbjct: 112 NKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Query: 205 AVAQRKEERRARLQAQ 220
+ + ER A L A+
Sbjct: 171 GHFKSRREREAELGAR 186
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 262/459 (57%), Gaps = 47/459 (10%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER++ A+K F NV++KNLD T+++ +FG++G ITS
Sbjct: 231 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 290
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+++D + K + FGFVN+ N + A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++
Sbjct: 291 SLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRY 350
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E ++K+QG+NL+IKNL D +DDE+LK FS FGTITS K+M D G SKG GFV
Sbjct: 351 EQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVC 410
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
++TPEEA++A+ EMN +M+ KPLYVA+AQRKE RR++L+AQ +Q R
Sbjct: 411 YTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFR---------- 460
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQG 295
L QQ PA+ +G L+ G P G P +P G
Sbjct: 461 -----------LQQQVAAAAGIPAV-----QYGATGPLIYG--PGGYP-----IPAAVNG 497
Query: 296 QQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVP 355
+ G G P+ P MP Q P G A YP G N + G M+P
Sbjct: 498 RGMPMVPGHNGPMPM------YPGMPTQFPAGGPAPGYP-GMNARGPVPAQGRPMMMPGS 550
Query: 356 VDMGAGIPRRDASVGQP-MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
V AG +A P MP + LA E ++ +LGE LYP V E + K+T
Sbjct: 551 VP-SAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKIT 609
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453
GMLLEM +E+L LLE AL +V EA+ VL+ Q+
Sbjct: 610 GMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFVDQE 648
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVF+KNLD + ++ L F +G I S V D G +K +GFV+F++ + A A+E +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG +D++ YVG + ER+ ++ +A+K N+YIKNL I +++
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKV-----EALKANF-----TNVYIKNLDTEITEQEFS 278
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+LF +FG ITS +++D + +G GFV ++ E A +A+ E+N K K LYV AQ+
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ ++ QM+
Sbjct: 339 KHEREEELRKRYEQMK 354
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VNF N +D KA++
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 141 LNYTLIKGRPCRI----MWSQRDPSLR------------KMGTGNVFIKNLDPAIDNKAL 184
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G +KG GFV F + E A+ A+ +NG ++ K +YV
Sbjct: 185 HDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHV 244
Query: 209 RKEERRARLQA 219
+ ER+++++A
Sbjct: 245 SRRERQSKVEA 255
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 194/484 (40%), Positives = 277/484 (57%), Gaps = 39/484 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++VFVG F ++ERE A +F NV++KN E DE LK +FG++G S
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK F
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++Q +NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ-MRPVAMGPS--VPP 235
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L ++ Q M V P+ PP
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ-------QQLVPGMRPAGAPMPNFF 288
P Y + A + P + Q Q +RP GAP F
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRP-GAPRVPFS 458
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPH--------QMPPRGHAYRYPLG-RNM 339
+ Q + +R A QT P P + PR Y+Y G RN
Sbjct: 459 TMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNP 515
Query: 340 QDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLY 399
Q +M + V + GQ T ++ LA+A P++Q+ +LGE L+
Sbjct: 516 QQHRNAQPQVTMQQLAVHVQ----------GQE---TLTASRLASAPPQKQKQMLGERLF 562
Query: 400 PLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPAD 459
PL++ + A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++ ++A A
Sbjct: 563 PLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAV 622
Query: 460 QLAS 463
A+
Sbjct: 623 NSAT 626
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 11/201 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+FVKNLD+S ++ L +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAER 153
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A++ +NG + R+ +VG+ + + ERE EL + ++ N+YIKN G+ +D
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----------NVYIKNFGEDMD 203
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 205 AVAQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ F QM+
Sbjct: 264 GRAQKKVERQTELKRTFEQMK 284
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G I S + RD S + +VNF++ DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N+++KNL SI+++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVG----------------NIFVKNLDKSINNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ S FG I SC V+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 204/545 (37%), Positives = 284/545 (52%), Gaps = 125/545 (22%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KNLD+ ++E+ +++F ++G ITSA
Sbjct: 199 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVN+ D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 TLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D IDDEKL+E+F+ +GTITS KVMRD +
Sbjct: 319 EAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSD 378
Query: 169 -----------------------------------------GISKGSGFVAFSTPEEASR 187
G SKG GFV FS+P+EAS+
Sbjct: 379 KEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASK 438
Query: 188 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGL 247
A+ EMN +MI KPLYVA+AQRK+ RR++L+A + + +G+
Sbjct: 439 AVTEMNQRMINGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAA---------AAGM 489
Query: 248 GQQFLYGQAPPAII--PPQAGFGYQQQLVPGMRPAG---APMPNFFVPVVSQGQQGQRPG 302
Q ++ PA+ P Q GF +PG + G AP P + V G+ GQ PG
Sbjct: 490 PQPYMQ----PAVFYGPGQQGF------IPGGQRGGLPFAPQPGMMMGVPG-GRPGQYPG 538
Query: 303 ------GRRGAGPVQQT----QQPLPIMPHQMPPRG--HAYRYPLGRNMQDFPFDMGAGS 350
G RG GP QQ Q +P+ M P G + YP M F GAG
Sbjct: 539 PFPGQQGGRGMGPNQQIPPNFAQGIPM--GAMGPGGIPNGMGYP---QMGQVQFGRGAGG 593
Query: 351 MLPVP-VDMGAGIPRRD----------------------------ASVGQPMPITALST- 380
VP + MG G+ A G+ P L+
Sbjct: 594 RGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQ 653
Query: 381 ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVA 440
+LA A QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV
Sbjct: 654 SLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVD 713
Query: 441 EAMEV 445
EA+ V
Sbjct: 714 EALSV 718
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL I +E+ +++F +FG ITS + RD G S+G GFV +ST + A A+ EMN
Sbjct: 232 YIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + + LYV AQ+K ER L+ Q+ R
Sbjct: 292 KEVKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 109 LNYTLIKGKPCRIMWSQR 126
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 201/466 (43%), Positives = 280/466 (60%), Gaps = 39/466 (8%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+V+VGH + ++ER+ +T+ F NV+ KN+D TD++ +K+F ++G ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ RD DGKSK FGFVNFE+ ++A KAV+ L+ F ++ +V +AQKKSERE+EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + KFQG+NLY+KN+ +S DDE+L+E F+ FG ITSCK+MR PSG+S+G GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
+S PEEA++A++EMNGKM+ ++PLYVA+AQRK+ RR +L+AQ Q + + +
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGM 436
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQG 298
YP G Y Q P P Q G +VP R A A M +P+ GQ G
Sbjct: 437 GYP------GPGMYYPQ--PGAFPGQPG-----GMVPRPRYAPAGMMPQGMPMAPYGQPG 483
Query: 299 QRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSM-----LP 353
Q P AG + Q +P PPRG G P
Sbjct: 484 QFP-----AGMMPQGYRPA------RPPRGAPNAAGGPAPPAGARPPTGVNGAPRPAGQP 532
Query: 354 VPVDMGAGIPRRDAS--VGQP---MPITALSTALANASPEQQRTLLGESLYPLVEQLERD 408
VP G +PR A+ G+P P + ALA ASPE+Q+ +LGE++YP V + +
Sbjct: 533 VP---GQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPE 589
Query: 409 AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454
A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q +
Sbjct: 590 LAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 113/204 (55%), Gaps = 11/204 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ +T N+F+KNLD ++ L F +G I S V + G S +GFV++E
Sbjct: 124 QRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
A+ A A++ +NG +D++ YVG + ER+ ++ +ET F N+Y K
Sbjct: 183 TAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKI--------EETRANF--TNVYAK 232
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + D++ ++LF++FG ITSC + RD G SKG GFV F EA +A+ E++
Sbjct: 233 NVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDF 292
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
+ L+VA AQ+K ER L+ +
Sbjct: 293 KGQKLFVARAQKKSEREEELRRSY 316
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 21/220 (9%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
E+ A +++V LD S T+ L +IF GT+ S V RD +S + +VNF
Sbjct: 36 EQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNF 95
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
NA D +A+E LN +R + +Q+ + A++ T QG N++I
Sbjct: 96 LNAADGERAMEQLNYSLIRNRPCRIMWSQR------------DPALRRTG---QG-NIFI 139
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL ID++ L + F+ FG I SCKV + +G S G GFV + T E A A+ +NG +
Sbjct: 140 KNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGML 198
Query: 197 IVSKPLYVAVAQRKEERRARLQ---AQFSQMRPVAMGPSV 233
+ K +YV ++ER+A+++ A F+ + + P V
Sbjct: 199 LNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEV 238
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SG 169
EQ G EQ + D +LY+ L S+ + L E+FS GT+ S +V RD +
Sbjct: 28 EQPAVGNGEQ--RNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTR 85
Query: 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
S G +V F + RA+ ++N +I ++P + +QR
Sbjct: 86 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQR 125
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/535 (36%), Positives = 278/535 (51%), Gaps = 107/535 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F NV+VKN++ TDE+ +++F ++G +TS+
Sbjct: 211 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSS 270
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE+EL+ +
Sbjct: 271 SLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----------- 167
E A E +K+QG+NLYIKNLGD +DD+KL+ +FSE+G ITS KVMRD
Sbjct: 331 EAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEK 390
Query: 168 ------------------------------SGISKGSGFVAFSTPEEASRALAEMNGKMI 197
G SKG GFV FS P++A++A+ EMN +M+
Sbjct: 391 DKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMV 450
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAP 257
KPLYVA+AQRK+ R+++L+A + M + +G+ QQ++ QAP
Sbjct: 451 DGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAA---------AQAGMPQQYM--QAP 499
Query: 258 PAIIPPQAGFGYQQQLVPGMRPAGAPMP-NFFVPVVSQGQQGQRP---GGRRGAGPVQQT 313
Q GF PG R G P P VP V G+ GQ P GGR G P Q
Sbjct: 500 VYYAGQQPGF----MPAPGGR--GVPFPQGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMP 553
Query: 314 QQPLPIM---PHQMPPRGHAYRYPLGRNMQD------------------FPFDMGAGSML 352
PI P PP Y +G+ P + G +
Sbjct: 554 PMGYPINQFGPGAFPPNTPQYMAAMGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAV 613
Query: 353 P------VPVDMGA-GIPRRDASV-----------GQPMPITA---LSTALANA-SPEQQ 390
P P + G G PR +A+ G P ++A L LA P+ Q
Sbjct: 614 PGYPPAGRPQNGGGRGTPRGNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQ 673
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+ ++GE+L+P ++ ++ A K+TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 674 KQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAV 728
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+F+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 137 QRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYE 196
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ +E+K F N+
Sbjct: 197 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANF-------------TNV 243
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + + DE+ +ELF++FG +TS + RD G S+G GFV F+T E A++A+ E+NG
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 304 KDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V ++T + +AL E
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 121 LNYTLIKGRPCRIMWSQR 138
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/453 (39%), Positives = 256/453 (56%), Gaps = 58/453 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ IK F N++VKN+D ++EDLKK+F YG ITS
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSI 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVN+E + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 263 YLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL D+ID EKL+E F FGTITS +VM D +G SKG GFV
Sbjct: 323 ENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMN +M KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 383 FSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAT--- 439
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVP----GMRPAGAPMPNFFVPVVSQ 294
G P IPP F QQ P G P P P ++ +
Sbjct: 440 ---------------GGIPGQFIPPM--FYGQQGFFPPNGRGNAPFPGPNPQM---IMRR 479
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
GQ P GP QP+P+ + +PP+ AY G+N++
Sbjct: 480 GQPFGGPEQWPRPGP---NGQPVPV--YGIPPQ--AYSDFNGQNIRQ------------- 519
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLERDAA 410
P R+ + G+ L+ +A+A P+QQ+ +LGE LYP + + E +AA
Sbjct: 520 ---QRGYYPNRNQNKGRQQ--RDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAA 574
Query: 411 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
K+TGM+L++D E+L LLE E +A+
Sbjct: 575 GKITGMMLDLDNQEILALLEDDELFTNHFEDAL 607
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 129 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A+E +NG +DRE +VGK K +RE +E+K F N+
Sbjct: 189 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANF-------------TNI 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ +E LK+LF+ +G ITS + +D G SKG GFV + E A +A+ E+N
Sbjct: 236 YVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + +YV AQ+K ER L+ Q+ R
Sbjct: 296 KEINGQKIYVGRAQKKRERMEELKKQYENTR 326
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G ++S V RD KS + +VN+ +D KA+E
Sbjct: 53 SLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEE 112
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 113 LNYSPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKNLHPAIDNKAL 156
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 157 HDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI 216
Query: 209 RKEERRAR---LQAQFSQM 224
K++R ++ ++A F+ +
Sbjct: 217 SKKDRESKFEEIKANFTNI 235
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 279/536 (52%), Gaps = 108/536 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F N+++KN+D T+E+ +KIF ++G ITSA
Sbjct: 202 MLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSA 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVN+ + A AV+ ++ K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 262 TLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D +DDEKL+ELF +GTITS KVMRD +
Sbjct: 322 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDS 381
Query: 169 -------------------------------------------GISKGSGFVAFSTPEEA 185
G SKG GFV FS+P+EA
Sbjct: 382 EKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEA 441
Query: 186 SRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYP 241
S+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M P
Sbjct: 442 SKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQP 501
Query: 242 PGPSGLGQQFLY--GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQ 299
G GQQ GQ PQ G +PG RP P P P GQQG
Sbjct: 502 AVFYGPGQQGFIPAGQRGGMPFAPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG 551
Query: 300 RPGGRRGAGPVQQ---TQQPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLP 353
RG GP QQ Q +P+ Q P P G Y +G+ F G G +
Sbjct: 552 -----RGMGPNQQMPPNFQGIPMGAMQGPGGIPNGMGYPQAMGQ--VQFGRGGGRGQVPG 604
Query: 354 VPVDMGAGIP-----------------RRDASVGQP------MPITALST-ALANASPEQ 389
+P+ G P R + QP P AL+ AL A+P Q
Sbjct: 605 MPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQ 664
Query: 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
Q+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V
Sbjct: 665 QKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 128 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 187
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ---ELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ E+K F N+
Sbjct: 188 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANF-------------TNI 234
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + +E+ +++F +FG ITS + RDP G S+G GFV +ST E A A+ EM+
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHD 294
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + ++ LYV AQ+K ER L+ Q+ R
Sbjct: 295 KEVKTQKLYVGRAQKKHEREEELRKQYEAAR 325
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 112 LNYTLIKGKPCRIMWSQR 129
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 278 bits (711), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 185/464 (39%), Positives = 258/464 (55%), Gaps = 76/464 (16%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K F NV+ KN+D ++E+ KK+F YG ITS
Sbjct: 202 MLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSI 261
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNFEN + A KAV+ LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 262 YLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQY 321
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL D+ID EKL+E F FG+ITS +VM D +G SKG GFV
Sbjct: 322 ENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVC 381
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR--PVAMGPSV 233
FS+PEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q +QMR A +
Sbjct: 382 FSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI 441
Query: 234 PPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVS 293
P + PP YGQ P PP G P P P +P
Sbjct: 442 PGQ--FIPP--------MFYGQQ-PGFFPPNG---------RGNGPFPGPNPQMMMP--- 478
Query: 294 QGQ----QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG 349
+GQ QGQ P GP QP+P+ + MPP + F+ GA
Sbjct: 479 RGQIPPPQGQWP----RPGP---NGQPVPV--YGMPP------------VYGGDFNNGAN 517
Query: 350 ------SMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV- 402
P G ++D L+ +ANA +QQ+ +LGE LYP +
Sbjct: 518 GGRQQRGYYPNRNQNQKGRQQKD-----------LAAIIANAPADQQKRILGEELYPKIV 566
Query: 403 ---EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+ E +AA K+TGM+L++D E+L LLE E +A+
Sbjct: 567 STGKAQEPEAAGKITGMMLDLDNEEILALLEDDELFNTHFEDAL 610
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G SKCFGFV++E A+ A A+E +
Sbjct: 140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENV 199
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE YVGK K +RE +E+K F N+Y KN+ +E
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEMKANF-------------TNVYAKNIDLDFSEE 246
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ K+LF +G ITS + +D G SKG GFV F E A +A+ E+N K I + +YV
Sbjct: 247 EFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGR 306
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ Q+ R
Sbjct: 307 AQKKRERLEELKKQYENTR 325
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V L+ S + L +IF G + S V RD KS + +VNF +D KA+E
Sbjct: 52 SLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIED 111
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + R + +Q+ + G N++IKNL +ID++ L
Sbjct: 112 LNYSLIEGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKAL 155
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV D GISK GFV + T E A A+ +NG ++ + +YV
Sbjct: 156 HDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHI 215
Query: 209 RKEERRARLQ 218
K++R ++ +
Sbjct: 216 SKKDRESKFE 225
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP- 167
E EQ G+ E+A +LY+ L S+++ L E+FS G + S +V RD
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAV 87
Query: 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ S G +V F E+ +A+ ++N +I +P + +QR
Sbjct: 88 TKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQR 129
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 210/537 (39%), Positives = 276/537 (51%), Gaps = 112/537 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA
Sbjct: 203 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 263 TLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D +DDEKL+ELFS FGTITS KVMRD
Sbjct: 323 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEK 382
Query: 169 -------------------------------------GISKGSGFVAFSTPEEASRALAE 191
G SKG GFV FS+P+EAS+A+ E
Sbjct: 383 EKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTE 442
Query: 192 MNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGL 247
MN +M+ KPLYVA+AQRK+ RR++L+A + + P+ M P G
Sbjct: 443 MNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGP 502
Query: 248 GQQFLY--GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRR 305
GQQ GQ PQ G +PG RP P P P GQQG R
Sbjct: 503 GQQGFIPAGQRGGMPFAPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG-----R 547
Query: 306 GAGPVQQTQ---QPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDM 358
G GP QQ Q +P+ Q P P G Y M F GAG VP + M
Sbjct: 548 GMGPNQQIPPNFQGIPMGAMQGPGGIPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPM 602
Query: 359 GAGIPRRDASVG----------------------------QPMPITALSTA--LANASPE 388
G GI G + +P T TA L+ P
Sbjct: 603 GQGIRGPGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPP 662
Query: 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
QQ+ +LGE+LYP ++ + + A K+TGMLLEMD E+L LLE EAL+AKV EA+ V
Sbjct: 663 QQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSV 719
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 129 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 189 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + DE+ +++F +FG ITS + RD G S+G GFV FST + A A+ EMN
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + LYV AQ+K ER L+ Q+ R
Sbjct: 296 KEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 113 LNYTLIKGKPCRIMWSQR 130
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 210/535 (39%), Positives = 276/535 (51%), Gaps = 110/535 (20%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ TDE+ +K+F ++G ITSA
Sbjct: 203 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSA 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF D A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 263 TLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E K+QG+NLY+KNL D +DDEKL+ELFS FGTITS KVMRD
Sbjct: 323 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEK 382
Query: 169 -----------------------------------GISKGSGFVAFSTPEEASRALAEMN 193
G SKG GFV FS+P+EAS+A+ EMN
Sbjct: 383 EKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 442
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVP----PRMPMYPPGPSGLGQ 249
+M+ KPLYVA+AQRK+ RR++L+A + + P+ M P G GQ
Sbjct: 443 QRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQ 502
Query: 250 QFLY--GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGA 307
Q GQ PQ G +PG RP P P P GQQG RG
Sbjct: 503 QGFIPAGQRGGMPFAPQPGM---VMGIPGGRPGQYPGP---FP----GQQGG-----RGM 547
Query: 308 GPVQQTQ---QPLPIMPHQMP---PRGHAYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGA 360
GP QQ Q +P+ Q P P G Y M F GAG VP + MG
Sbjct: 548 GPNQQIPPNFQGIPMGAMQGPGGIPNGMGY-----PQMAQVQFGRGAGGRGQVPGMPMGQ 602
Query: 361 GIPRRDASVG----------------------------QPMPITALSTA--LANASPEQQ 390
G+ G + +P T TA L P QQ
Sbjct: 603 GMRGPGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQ 662
Query: 391 RTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 663 KQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSV 717
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 129 QRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 189 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + DE+ +++F +FG ITS + RD G S+G GFV FST + A A+ EMN
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + LYV AQ+K ER L+ Q+ R
Sbjct: 296 KEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 113 LNYTLIKGKPCRIMWSQR 130
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 180/474 (37%), Positives = 257/474 (54%), Gaps = 56/474 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+VG + K++RE+ +K + N++VKN+D + T+++ +++F +G ITS
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSI 277
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GKSK FGFVNFE + AAKAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 278 YLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQY 337
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL + ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 338 EAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVC 397
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FSTPEEA++A+ EMN +M+ KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 398 FSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA----- 452
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFF 288
GL QF+ YGQ PP G PG MR G P P
Sbjct: 453 ----AAGGLPGQFMPPMFYGQQ--GFFPPN---GRGNAPFPGPNPQMMMRGRGQPFP--- 500
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
+Q RPG QP+P+ + MPP+ + G+NM+
Sbjct: 501 -------EQWPRPG---------PNGQPVPV--YGMPPQFQDFN---GQNMRPQQQQQQQ 539
Query: 349 GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQ 404
P R A G +P L+ +ANA E Q+ +LGE LY + +
Sbjct: 540 QQQQQQQQQQRGYYPNRPA--GGNVPAKDLAALIANAPLEAQKRILGEELYQRIVATGKA 597
Query: 405 LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 458
E +AA K+TGM+L ++ E+L LL+ E EA+ + N A
Sbjct: 598 QEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAA 651
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 121/208 (58%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 144 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYE 203
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A A+E++NG +DRE YVGK K +RE +L + MK N+Y+K
Sbjct: 204 TEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL-----EEMKANY-----TNIYVK 253
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N+ + +++ +ELF+ FG ITS + +D G SKG GFV F E A++A+ E+N K I
Sbjct: 254 NIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEI 313
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ +YV AQ+K ER L+ Q+ +R
Sbjct: 314 NGQKIYVGRAQKKRERTEELKKQYEAVR 341
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 16 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74
+++ E+ I +++V L+ S + L +IF G + S V RD KS + +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 134
N+ +D KA+E LN + R + +Q+ + G N+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG----------------NI 157
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
+IKNL +ID++ L + FS FG I S KV D G SK GFV + T E A A+ +NG
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 195 KMIVSKPLYVAVAQRKEERRARLQ 218
++ + +YV K++R ++L+
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLE 241
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 271 bits (693), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 253/457 (55%), Gaps = 61/457 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F NV+VKNL + ++IF +G +TS
Sbjct: 209 MLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSV 268
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ D +GKS+ FGFVNFEN + A AV+ +N K+ D ++ YVG+AQKK ER ELK +
Sbjct: 269 HLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DSID EKL+E F FGTITS +VM D +G SKG GFV
Sbjct: 329 ESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVC 388
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q + M +
Sbjct: 389 FSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAA----- 443
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG---MRPAGAPMPNFFVPV 291
+G+ QF+ YGQ P PP G Q P M P G MP
Sbjct: 444 ----AAAGMPGQFMSPMFYGQQ-PGFFPPNGRGGAQGPFPPNPQMMMPRGGQMP------ 492
Query: 292 VSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPP-RGHAYRYPLGRNMQDFPFDMGAGS 350
QGQ P AGP QP+P+ + MPP G + P G+ Q
Sbjct: 493 ---PPQGQWP----RAGP---NGQPVPV--YGMPPVYGGEFNGPNGQRQQ---------- 530
Query: 351 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV----EQLE 406
GA P R+ G+P L+ ++ +QQ+ +LGE LYP + + E
Sbjct: 531 -------RGAYPPNRNQKGGRPQ--RDLAAIISTVPVDQQKRILGEELYPKIVATGKAQE 581
Query: 407 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 443
+AA K+TGM+L+++ E+L LLE E + +A+
Sbjct: 582 PEAAGKITGMMLDLENEEILALLEDDELFENHFEDAL 618
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E A+ A A+E +
Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENV 206
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG +DRE +VGK K +RE +E+K F N+Y+KNL +D+
Sbjct: 207 NGMLLNDREVFVGKHVSKRDRESKFEEMKANF-------------TNVYVKNLAPEVDNA 253
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
K +E+F FG +TS + D G S+G GFV F E A A+ EMN K I + LYV
Sbjct: 254 KFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGR 313
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER L+ + R
Sbjct: 314 AQKKRERLDELKRLYESTR 332
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 89
++V L+ S + L +IF G ++S V RD KS + +VNF D ++A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D R + +Q+ + G N++IKNL +ID++ L
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG----------------NIFIKNLHPAIDNKALH 163
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ FS FG I SCKV D G SK GFV + T E A A+ +NG ++ + ++V
Sbjct: 164 DTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 210 KEERRAR---LQAQFSQMRPVAMGPSV 233
K +R ++ ++A F+ + + P V
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEV 250
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 183/482 (37%), Positives = 263/482 (54%), Gaps = 75/482 (15%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG + K++RE+ +K F N++VKN+D + ++E +K+F +G ITS
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSI 262
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGKSK FGFVNFE+ + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+
Sbjct: 263 YLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL D+ID EKL+E F FGTITS KVM D +G SKG GFV
Sbjct: 323 EAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVC 382
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
F+TPEEA++A+ EMN +MI KPLYVA+AQRK+ RR++L+ Q Q R +M
Sbjct: 383 FTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQI-QAR---------NQMR 432
Query: 239 MYPPGPSGLGQQFL----YGQAPPAIIPPQAGFGYQQQLVPG------MRPAGAPMPNFF 288
M GL QF+ YGQ PP G PG MR G P P
Sbjct: 433 MQNAAAGGLPGQFIPPMFYGQQ--GFFPPN---GRGNAPYPGPNPQMMMRGRGQPFP--- 484
Query: 289 VPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGA 348
+Q RPG QP+P+ + +PP+ F D
Sbjct: 485 -------EQWPRPG---------PNGQPVPV--YGIPPQ--------------FQQDFNG 512
Query: 349 GSMLPVPVDM----GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV-- 402
+M P G P R+ + + L+ +++ +QQ+ +LGE LYP +
Sbjct: 513 QNMRPQQQQQQQPRGGYYPNRNQTSKRD-----LAAIISSVPQDQQKRILGEELYPKIVA 567
Query: 403 --EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQ 460
+ E +AA K+TGM+L ++ E+L LL+ E +A+ + +A A++
Sbjct: 568 TGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAGNAEE 627
Query: 461 LA 462
A
Sbjct: 628 QA 629
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ A ++ N+F+KNL + ++ L F +G I S V D G+SKCFGFV++E
Sbjct: 129 QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYE 188
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A+E +NG +DRE +VGK K +RE +E+K F N+
Sbjct: 189 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANF-------------TNI 235
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + +E ++LFS FG ITS + +D G SKG GFV F E A +A+ E+N
Sbjct: 236 YVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELND 295
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I + +YV AQ+K ER L+ Q+ +R
Sbjct: 296 KEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFEN 78
E+ + +++V L+ S + L +IF G ++S V RD KS + +VN+
Sbjct: 43 ESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHK 102
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+D KA+E LN + R + +Q+ + G N++IKN
Sbjct: 103 YEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG----------------NIFIKN 146
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L +ID++ L + FS FG I SCKV D G SK GFV + T E A A+ +NG ++
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 199 SKPLYVAVAQRKEERRAR---LQAQFSQM 224
+ ++V K++R ++ ++A F+ +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNI 235
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 241/455 (52%), Gaps = 58/455 (12%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 60
M+IN ++VFVG F +ER + KF NVF KNL E + LK++ +YG IT+ +
Sbjct: 161 MMINGQKVFVGPFKSSKERGQ-PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITI 219
Query: 61 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 120
M D GKSK FGF NFE+A+ A VE NGK F + Y G+AQKK ERE ELK FE
Sbjct: 220 MADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFET 279
Query: 121 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAF 179
K+QG+NLYIKN+ DSID++KL+E+FS+FGTITS VM+D + SKG GFV +
Sbjct: 280 -------KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
Query: 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPM 239
+ P+EA+RA+ EMNG+MI +KPLYVA+AQRK+ RRA+L+ Q Q + +PP
Sbjct: 333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPP---T 389
Query: 240 YPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMR-----PAGAPMPNFFVPVVSQ 294
Y GP PA + PQ + QQ++P R P G P + ++
Sbjct: 390 YGSGPVFF---------TPAPVNPQVVY---QQMMPRPRNWNGQPVGVPQGQYANMNYAR 437
Query: 295 GQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPV 354
GQ R GP Q QP Q PR D+ +PV
Sbjct: 438 GQP-------RQNGPRQNGGQP-----RQNGPRP----------------DVSGAQPIPV 469
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
+ + + L + + S +QQ LGE LYPL+ + D A K+T
Sbjct: 470 QQQTTLDVAQTQQAASSAESALNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKIT 529
Query: 415 GMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GMLL+ + E+ L + + L K+ EA+EVL S
Sbjct: 530 GMLLDSLPVEELFTLTQRQDLLADKIREALEVLGS 564
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+ + L F +G I S V+ D SK FGFV++E
Sbjct: 87 QRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+ +NG + ++ +VG + ER Q + +F N++ K
Sbjct: 147 TQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKF-------------TNVFFK 193
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NL + + ++LKEL ++G IT+ +M D G SKG GF F + E A + NGK+
Sbjct: 194 NLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIF 253
Query: 198 VSKPLYVAVAQRKEERRARLQAQF 221
KP+Y AQ+K ER A L+ F
Sbjct: 254 HGKPIYAGRAQKKIEREAELKHTF 277
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 87
++++V +L +++ L +IF + G +++ V RD + + S + +VN+ N DA +A++
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 88 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147
LN + + +Q+ + G N++IKNL ID +
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSLRKSGVG----------------NVFIKNLDKGIDHKA 113
Query: 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207
L + FS FG I SCKV+ D SKG GFV + T E A +A+A++NG MI + ++V
Sbjct: 114 LYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPF 173
Query: 208 QRKEERRARLQAQFSQM 224
+ +ER + +F+ +
Sbjct: 174 KSSKERGQPTEVKFTNV 190
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 197/308 (63%), Gaps = 35/308 (11%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++V+V + K++R++ +K KF NV+VKN+D+ T+ E+ +++FG+YG ITSA
Sbjct: 189 MLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ +D +GK + FGFVNFE+ AAKAV+ LN +F ++ YVG+AQKK ER QELK Q+
Sbjct: 249 VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E A E + K+QG+NL++KNL DSIDDEKLKE F+ FGTITS KVMRD +G S+G GFV
Sbjct: 309 EAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRKE RR +L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARNQMRFQHANAAAAA 428
Query: 226 ------------PVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQL 273
P+ G +PPR+P P P + G +PPQ FG +
Sbjct: 429 AVAGLPGQFMPPPMYYG-GIPPRVPFQGPNPQ------MAGMPKNGAMPPQQ-FGRPGPM 480
Query: 274 VPGMRPAG 281
G P G
Sbjct: 481 YGGFAPQG 488
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNF 76
E ET ++T +++V L+ + ++ L IF G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 77 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136
+ + KA+E LN + + +Q+ ++ G N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG----------------NIYI 130
Query: 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 196
KNL +ID++ L E FS FG I SCKV D +G+S+G GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 197 IVSKPLYVAVAQRKEERRARLQ 218
+ + +YVA+ K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 394 LGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 442
LGE LY V +D AA K+TGM+L++ +V+ LLE+ E L+ EA
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEA 558
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 178/261 (68%), Gaps = 9/261 (3%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+ND++VFVG F ++ERE A +F NV++KN + DE LK++FG+YG S
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D +GKSK FGFV+FE +DA KAV+ +NGK + + +VG+AQKK ER+ ELK +F
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKF 280
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ ++ + ++QG+NLY+KNL D IDDE+L++ F FGTITS KVM + G SKG GFV
Sbjct: 281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVC 339
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMP 238
FS+PEEA++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q P+ P +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN--PVIN 397
Query: 239 MYPPGPSGLGQQFLYGQAPPA 259
Y P PS + PPA
Sbjct: 398 PYQPPPSS----YFMAAIPPA 414
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 130/208 (62%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ N+F+KNLD+S ++ L F +G I S V+ D +G SK +GFV+FE
Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A +A++ +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------TNVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N GD ++DE+LKE+F ++G S KVM D +G SKG GFV+F E+A +A+ EMNGK +
Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+ L+ +F QM+
Sbjct: 257 NGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L + T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N R + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVG----------------NIFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAR 186
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 153/383 (39%), Positives = 211/383 (55%), Gaps = 81/383 (21%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VG+ + K++R++ +K F N++VKN+ TDE+ + +F +YG +TS+
Sbjct: 216 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSS 275
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + AAKAVE LNGK+F ++ YVG+AQKK ERE+EL+ +
Sbjct: 276 SLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSY 335
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------- 168
E A E +K+QG+NLYIKNL D IDD+KL+++FSE+G ITS KVMRD
Sbjct: 336 EAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETE 395
Query: 169 -----------------------------------GISKGSGFVAFSTPEEASRALAEMN 193
G SKG GFV FS P++A++A+AEMN
Sbjct: 396 GKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMN 455
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLY 253
+MI KPLYVA+AQRK+ R+ +L+A + M + +GL QQ++
Sbjct: 456 QRMIEGKPLYVALAQRKDVRKNQLEASIQARNQLRMQQAA---------AQAGLPQQYM- 505
Query: 254 GQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP----NFFVPVVSQGQQGQRP-----GGR 304
Q P P G Q +P P G MP +P V G+ GQ P GGR
Sbjct: 506 -QTPVYYAP-----GQQPNFMP---PGGRGMPFPQGGLGMPAVQGGRPGQFPPYAQQGGR 556
Query: 305 RGAGPVQQTQQPLPIMP-HQMPP 326
G P Q LPI P Q PP
Sbjct: 557 GGMPPQQ-----LPIYPLGQFPP 574
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 142 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 201
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ AA+A++ +N ++++ YVG K +R+ +E+K F N+
Sbjct: 202 TDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANF-------------TNI 248
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ DE+ ++LF+++G +TS + RD G S+G GFV F+T E A++A+ E+NG
Sbjct: 249 YVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 309 KEFRGQDLYVGRAQKKHEREEELRKSYEAAR 339
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 379 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAK 438
S A +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD E+++LLE AL AK
Sbjct: 681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAK 740
Query: 439 VAEAMEVLRSVAQQQ 453
V EAM V + Q
Sbjct: 741 VNEAMAVYDEYVKSQ 755
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS+ G++ S +V RD + S G +V +++ + +AL E
Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEE 125
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I +P + +QR
Sbjct: 126 LNYTLIKGRPCRIMWSQR 143
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 241 bits (616), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N +V+V + K++R + K F N++VKN+D TTDE+ +++F +YG I SA
Sbjct: 201 MLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSA 260
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D +GK K FGFVNF + + AAKAVE LNGK+F + YVG+AQKK ER +ELK Q+
Sbjct: 261 ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQY 320
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ E + KFQG+NL+IKNL DSIDDEKLKE F+ +GTITS +VMRD G SKG GFV
Sbjct: 321 EQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVC 380
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
FS+PEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q
Sbjct: 381 FSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 423
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 25 KTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADD 81
K + NN ++V LD + T+ L +F G I+S V RD K+ + +VN+ + +
Sbjct: 44 KVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEA 103
Query: 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 141
KA++ LN + + R + SER+ ++ K N++IKNL
Sbjct: 104 GKKAIQELNYAEINGRPCRI----MWSERDPAIR------------KKGSGNIFIKNLHP 147
Query: 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201
+ID++ L E FS FG + SCKV D +G S+G GFV F +A A+ +NG ++
Sbjct: 148 AIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLE 207
Query: 202 LYVAVAQRKEERRARLQ 218
+YVA+ K++R ++L+
Sbjct: 208 VYVAMHVPKKDRISKLE 224
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 391 RTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
R LGE LY V + +AA K+TGM+L++ +V+ LL++ E + + EA+ +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 449 VAQQQ 453
++Q
Sbjct: 584 FKKEQ 588
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 239/454 (52%), Gaps = 53/454 (11%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 61
++ DK+++VG F++K +R V + K+ N+++KNLD +++ L++ F E+G I S +
Sbjct: 176 IVADKEIYVGKFMKKTDR--VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIA 233
Query: 62 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 121
+D + + + FVNF+N +DA +A E +NG KF + YVG+AQKK+EREQ L+ QF++
Sbjct: 234 KDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEK 293
Query: 122 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181
+E + N+Y+KN+ ++ +E+L++ FS+ GTITS K+M D G SKG GFV FST
Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353
Query: 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS---QMRPVAMGPSVPPRMP 238
PEEA A+ +G+M KPLYVA+AQ+KE+R+ +LQ QF + R + SV P
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNP--G 411
Query: 239 MYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQ--LVPGMRPAGAPMPNFFVPVVSQGQ 296
Y P Y P ++ YQ + G+ PN
Sbjct: 412 TYAP--------LYYTNTHPGMV-------YQSYPLMWKSANMIGSSYPN---------- 446
Query: 297 QGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRY-PLGRNMQDF-PFDMGAGSMLPV 354
P M P + R L RN + P + MLP+
Sbjct: 447 ---------------SEAVTYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPL 491
Query: 355 PVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVT 414
D R G+ M + E Q LLGE L+PLVE+LE A K+T
Sbjct: 492 SRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--LLGELLHPLVEKLEPQLANKIT 549
Query: 415 GMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 448
GMLLEMD++E+L LL+SPE L +V EA EVL+S
Sbjct: 550 GMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 14/194 (7%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE D A A++ L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
N D+E YVGK KK++R +K + +K+ NLY+KNL + ++ L+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR---VKPE---------EKYT--NLYMKNLDADVSEDLLR 218
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
E F+EFG I S + +D + + +G FV F PE+A RA +NG SK LYV AQ+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 210 KEERRARLQAQFSQ 223
K ER L+ QF +
Sbjct: 279 KAEREQLLREQFKE 292
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 88
+++V +L S T+ L F E+ ++TS + +D G+S C+G+ NF + DA A+E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
N + + V + + + + G N+++KNL +S+ + L
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVG----------------NVFVKNLPESVTNAVL 128
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+++F +FG I SCKV G S+G GFV F + A A+ +N ++ K +YV
Sbjct: 129 QDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM 188
Query: 209 RKEER 213
+K +R
Sbjct: 189 KKTDR 193
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 249/484 (51%), Gaps = 85/484 (17%)
Query: 1 MLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVG + K +R K F NVF+KNL T+ + +++ ++G +S
Sbjct: 197 MLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSV 256
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ + +GK FGFV+++ D A KA++ L+ +F + + G+A+KK ER EL+ Q+
Sbjct: 257 HLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQY 316
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E + E ++K+QG+NLYIKNL D+IDD+KL+ F+ GTITS KVM D +G SKG GFV
Sbjct: 317 EASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVC 376
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMRPVAMGPSVPP 235
+S+PEEA++A+ EMN +++ KPLYV +AQRK+ RR++LQ Q +QMR
Sbjct: 377 YSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMR---------- 426
Query: 236 RMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPM--PNFFVPVVS 293
QQQ G P G M P F P
Sbjct: 427 ---------------------------------LQQQAAAGGLP-GQYMGNPGVFYP--- 449
Query: 294 QGQQGQRPGGRRG---AGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFP---FDMG 347
GQ G P GR G Q +P +Q PPRG P G NM P + G
Sbjct: 450 -GQPGFMPPGRGGMPFGANPQMMMRPPMPPQNQFPPRG----VPGGPNMYGAPPQGYQQG 504
Query: 348 A----GSML---------PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394
G M P P G PRR G+ ++S AL NA EQ + L+
Sbjct: 505 GFPPQGPMRGGQPPRSGQPGPQGQFRGAPRRKD--GESRVADSISNALENAPEEQHKQLV 562
Query: 395 GESLYPLV---EQLERDA--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449
GE+LYP V + ++ +A A K+TGMLLEM E+L +++ E L+A++ +A+
Sbjct: 563 GEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQINDAITAYNEY 622
Query: 450 AQQQ 453
Q
Sbjct: 623 LNSQ 626
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 10/208 (4%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT N+++KNLD + ++ L F +G I S + D G S+ FGFV++E
Sbjct: 123 QRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYE 182
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+A+ A A++ +NG +D++ +VG KS+R Q + Q K N++IK
Sbjct: 183 SAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQ----------KNSFTNVFIK 232
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
NLG I + + +EL ++FG +S + + G G GFV + + A +A+ ++
Sbjct: 233 NLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEF 292
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
L+ A++K ER L+ Q+ R
Sbjct: 293 KGNKLFAGRAKKKYERADELRKQYEASR 320
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L +IF G +TS V RD +S + +VNF N D +A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN +R + +Q+ + A+++T N+YIKNL +ID++ L
Sbjct: 107 LNYSPIKERPCRIMWSQR------------DPALRKT----GAGNIYIKNLDPAIDNKAL 150
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCK+ D G S+G GFV + + E A A+ +NG ++ K ++V
Sbjct: 151 HDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHV 210
Query: 209 RKEERRARLQAQ 220
K +R + Q
Sbjct: 211 PKSDRMQSFEEQ 222
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 108 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167
+E E + + E+ KE D+ +LY+ L S+ + L E+F+ G +TS +V RD
Sbjct: 24 AEGEAKTESSEEKGSKE--DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDA 81
Query: 168 -SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
+ S G +V F + RAL E+N I +P + +QR
Sbjct: 82 ITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQR 124
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 41/305 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++V L ++ER++ +TK + N++VKN++ TTDE +++F ++G I SA
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSA 248
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ +D DGK K FGFVN+E +DA KAVEALN + + + YVG+AQKK+ER LK Q+
Sbjct: 249 SLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL++KNL DS+DDEKL+E F+ +GTITS KVMR +G SKG GFV
Sbjct: 309 EAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVC 368
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 369 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAA 428
Query: 226 -----------PVAMGPSVPPR-MPMYPPGP-----------SGLGQQFLYGQAPPAIIP 262
P+ G +PPR +P P P +G+ QF G P +P
Sbjct: 429 AAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNG--PVYGVP 485
Query: 263 PQAGF 267
PQ GF
Sbjct: 486 PQGGF 490
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 108/196 (55%), Gaps = 10/196 (5%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ + D +GKSK FGFV+FE A +A++AL
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 90 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149
NG + +E YV + ER+ +L +ET K NLY+KN+ DE+ +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL--------EET--KAHYTNLYVKNINSETTDEQFQ 236
Query: 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
ELF++FG I S + +D G KG GFV + E+A +A+ +N + + LYV AQ+
Sbjct: 237 ELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Query: 210 KEERRARLQAQFSQMR 225
K ER L+ Q+ R
Sbjct: 297 KNERMHVLKKQYEAYR 312
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 20 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 78
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 138
+ KA+E LN R + +Q+ ++ G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG----------------NIFIKN 132
Query: 139 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 199 SKPLYVAVAQRKEERRARLQ 218
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 388 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 446 LRSVAQQQ 453
S ++Q
Sbjct: 563 YESFKKEQ 570
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 188/307 (61%), Gaps = 42/307 (13%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N ++++VG L K+ERE+ +K F NV++KN++ TTD++ +++ ++G S
Sbjct: 186 MLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSV 245
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+ R +G++K FGFVNF N +DA K VE LN +F + YV +AQKK ER+QELK Q+
Sbjct: 246 VLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQY 305
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E E + K+QG+NL+IKNL DSIDD+KL+E F+ +GTITS KVM +G SKG GFV
Sbjct: 306 EATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVC 365
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR---------- 225
FSTPEEA++A+ E N +++ KPLYVA+AQRK+ RR++L Q +QMR
Sbjct: 366 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAA 425
Query: 226 ------------PVAMGPSVPPR-MPMYPPGP--SGLG---------QQFLYGQAPPAII 261
P+ G +PPR +P P P + +G QF G P +
Sbjct: 426 AAAAGMPGQFMPPMFYG-VMPPRGVPFNGPNPQMANMGAMPKNGMPPHQFRNG--PVYGV 482
Query: 262 PPQAGFG 268
PPQ GF
Sbjct: 483 PPQGGFA 489
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89
N+F+KNL ++ L F +G I S+ V D GKSK FG+V+FE + A++A++AL
Sbjct: 124 NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 90 NGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 146
NG + +E YVG K ERE +E+K F N+YIKN+ D+
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANF-------------TNVYIKNINTETTDK 230
Query: 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206
+ +EL ++FG S + R P G +KG GFV F E+A + + E+N +PLYV
Sbjct: 231 EFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNR 290
Query: 207 AQRKEERRARLQAQFSQMR 225
AQ+K ER+ L+ Q+ R
Sbjct: 291 AQKKYERQQELKKQYEATR 309
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEA 88
+++V +LD S ++ L IF G ++S V RD K+ + +VNF + D A A+E
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ ++ G N++IKNL ID++ L
Sbjct: 96 LNFTPIKGKLCRIMWSQRDPSLRKKGAG----------------NIFIKNLHPDIDNKAL 139
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I S KV D +G SKG G+V F E AS A+ +NG ++ + +YV
Sbjct: 140 YDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHL 199
Query: 209 RKEERRARLQ 218
K+ER ++ +
Sbjct: 200 SKKERESKFE 209
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 115 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKG 173
+G E+ ETV +LY+ +L S+ + L ++FS G ++S +V RD + S G
Sbjct: 22 EGTNEENQSETV----SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLG 77
Query: 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 216
+V F+ + A A+ ++N I K + +QR R +
Sbjct: 78 YAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 388 EQQRTLLGESLYPLVEQLERD--AAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
++QR LGE LY + D AA K+TGM+L++ EV+ LLE+ E + EA
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 446 LRS 448
S
Sbjct: 561 YES 563
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 194 bits (494), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 145/211 (68%), Gaps = 5/211 (2%)
Query: 2 LINDKQVFVGHFLRKQERETVAIKTK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
L+ +VFVG F +++RE +++K F NV++KN DE LK +F +YG S
Sbjct: 161 LLKGCKVFVGRFKNRKDREA-ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
VM D GKSK FGFV+F++ + A KAVE +NG+ + + +VG+AQKK ER+ ELK F
Sbjct: 220 KVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMF 279
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
EQ +E + QG+ LYIKNL D+IDDEKL+ FS FG+I+ KVM++ G SKG G +
Sbjct: 280 EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLIC 338
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209
FS+PE+A++A+ EMNG+++ SKPL +A+AQR
Sbjct: 339 FSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ ++ NVF+KNLD+S ++ L + F +G I S+ VM D G SK + FV+F+
Sbjct: 87 QRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQ 145
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
N A +A+E +NGK + +VG+ + + +RE EL+ + + N+YIK
Sbjct: 146 NQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFT----------NVYIK 195
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G +DDE+LK++FS++G S KVM D SG SKG GFV+F + E A +A+ EMNG+ I
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ ++V AQ+K ER+A L+ F Q++
Sbjct: 256 NGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 26/214 (12%)
Query: 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENA 79
VA K + +++V +L T++ L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 80 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF---QGL-NLY 135
DA KA++ +N FD +KG+ + M D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195
IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 196 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 229
++ ++V + +++R A L+++ S+ V +
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KNLD D++ +K+F ++G ITSA
Sbjct: 205 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSA 264
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 265 TLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D IDDEKL+ELF +GTITS KVMRD
Sbjct: 325 EAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 131 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 190
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 191 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 237
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKNL IDD++ +++F +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 238 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 297
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I S+ LYV AQ+K ER L+ Q+ R
Sbjct: 298 KEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 144/321 (44%), Gaps = 75/321 (23%)
Query: 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 221
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 425 KSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI 484
Query: 222 SQMRPVAMGPSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPG 276
+ + P+ M P G GQQ F+ G PPQ G +PG
Sbjct: 485 QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPG 541
Query: 277 MRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQT----QQPLPIMPHQMP---PRGH 329
RP P P P GQQG RG GP QQ Q +P M Q P P G
Sbjct: 542 GRPGQYPGP---FP----GQQGG-----RGMGPNQQIPPNFAQGIP-MGMQGPGGIPNGM 588
Query: 330 AYRYPLGRNMQDFPFDMGAGSMLPVP-VDMGAGI-------------------------- 362
Y M F GAG VP + MG G+
Sbjct: 589 GY-----PQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQGGR 643
Query: 363 ---------PRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKV 413
P+ A+ G + L A P QQ+ +LGE+LYP ++ + + A K+
Sbjct: 644 GQNAAAPAGPQEGAAGG------VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKI 697
Query: 414 TGMLLEMDQTEVLHLLESPEA 434
TGMLLEMD TE+L L P A
Sbjct: 698 TGMLLEMDNTELLSLTRKPCA 718
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 115 LNYTLIKGKPCRIMWSQR 132
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 66 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 485
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+NDK+VFVGH + K++R++ +K F NV++KN+D+ T+E+ +++F ++G ITSA
Sbjct: 200 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSA 259
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD +GKS+ FGFVNF + A AV+ +N K+ ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 260 TLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
E A E K+QG+NLY+KNL D +DDEKL+ELF +GTITS KVMRD
Sbjct: 320 EAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 126 QRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYE 185
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG +D++ +VG K +R+ +E+K F N+
Sbjct: 186 TAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNV 232
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
YIKN+ + +E+ +ELF +FG ITS + RD G S+G GFV FST E A A+ EMN
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNE 292
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K I ++ LYV AQ+K ER L+ Q+ R
Sbjct: 293 KEIRTQKLYVGRAQKKHEREEELRKQYEAAR 323
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 172/530 (32%), Positives = 231/530 (43%), Gaps = 124/530 (23%)
Query: 3 INDKQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFG 50
I ++++VG +K ERE A K + N++VKNL + DE L+++FG
Sbjct: 295 IRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFG 354
Query: 51 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110
YGTITSA VMRD N E D+E +A K++E+
Sbjct: 355 PYGTITSAKVMRD----------TNIERTQTPE-----------SDKEKENKEATKENEK 393
Query: 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 170
E + E+ ++ D G D + L G
Sbjct: 394 ESSEAEKAEKTEEKPADS--GDEKKEDKESKKADKKGL--------------------GK 431
Query: 171 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMG 230
SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A +
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQ 491
Query: 231 PSVP----PRMPMYPPGPSGLGQQ-FLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMP 285
+ P+ M P G GQQ F+ GQ PPQ G +PG RP P P
Sbjct: 492 QAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQYPGP 549
Query: 286 NFFVPVVSQGQQGQRPGGRRGAGPVQQ---TQQPLPIMPHQMP-PRGHAYRYPLGRNMQD 341
P GQQG R G GP QQ Q +P+ Q P P G Y P G M
Sbjct: 550 ---FP----GQQGGR-----GMGPNQQLPPNFQGIPMGAMQGPVPNGMGY--PQG--MAQ 593
Query: 342 FPFDMGAGSMLPVPV--DMGAGIPRR----------------------------DASVGQ 371
F GAG VP +MG G+ A G+
Sbjct: 594 VQFGRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGR 653
Query: 372 PMPITA---LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 428
P A + AL+ A P QQ+ +LGE+LYP ++ + + A K+TGMLLEM+ TE+L L
Sbjct: 654 PEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSL 713
Query: 429 LESPEALKAKVAEAMEVL---------RSVAQQQANNPADQLASLSLNEN 469
LE EAL+AKV EA+ V S A +A P + S EN
Sbjct: 714 LEDEEALRAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 191
+LY+ L S+ + L ELFS G + S +V RD + S G +V ++ + RAL +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 192 MNGKMIVSKPLYVAVAQR 209
+N +I KP + +QR
Sbjct: 110 LNYTLIKGKPCRIMWSQR 127
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+V+VGH + K++R++ +K F N++VKN++ TD++ + +F +YG +TS+
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSS 271
Query: 59 VVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 117
+ RD + GKS+ FGFVNF + +DA+KAV+ LN K+F + YVG+AQKK ERE+EL+
Sbjct: 272 SLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKS 331
Query: 118 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 166
+E A +E K+QG+NLYIKNL D +DDEKL++LFSEFG ITS KVMRD
Sbjct: 332 YEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 120/212 (56%), Gaps = 17/212 (8%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D +G SK +GFV++E
Sbjct: 138 QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYE 197
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
+ A++A++ +NG ++++ YVG K +R+ E+K F N+
Sbjct: 198 TDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANF-------------TNI 244
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMN 193
Y+KN+ + D++ + LF ++G +TS + RD +G S+G GFV F++ E+AS+A+ E+N
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 194 GKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
K + LYV AQ+K ER L+ + R
Sbjct: 305 EKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F + G++ S V RD +S + +VN+ D KA+E
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN R + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 122 LNYTLIKGRPCRIMWSQR------------DPALRKTG---QG-NVFIKNLDVAIDNKAL 165
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D +G SKG GFV + T E AS+A+ +NG ++ K +YV
Sbjct: 166 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 209 RKEERRAR---LQAQFSQMRPVAMGPSV 233
K++R+++ ++A F+ + + P V
Sbjct: 226 PKKDRQSKFDEMKANFTNIYVKNINPEV 253
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 445
+P QQ+ +LGE+++P ++ + + A K+TGMLLEMD TE++ L+E+ AL++KV EA+ V
Sbjct: 676 NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAV 735
Query: 446 LRSVAQQQANNPADQLAS 463
+QQ + Q S
Sbjct: 736 YDDYVRQQGDGEGAQAPS 753
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 63/177 (35%)
Query: 6 KQVFVGHFLRKQERET------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 53
+ ++VG +K ERE A K + N+++KNLD+ DE L+++F E+G
Sbjct: 311 QNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFG 370
Query: 54 TITSAVVMRD-----------------------------GDGKS---------------- 68
ITSA VMRD GD
Sbjct: 371 PITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLG 430
Query: 69 --KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 123
K FGFV F N DDA KAV +N + +++ YV AQ+K R K Q EQ+++
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 122/166 (73%), Gaps = 2/166 (1%)
Query: 1 MLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
ML+N+K+VFVGH + K+ER + +K F N++VKN+D TDED +++F ++G ITSA
Sbjct: 199 MLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSA 258
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
+ RD GKS+ FGFVN+ + AA AV+ LN +F ++ YVG+AQKK ERE+EL+ Q+
Sbjct: 259 SIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQY 318
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 164
E A E K+QG+NLYIKNL D +DDEKL+++F+ FGTITS KV+
Sbjct: 319 EAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVI 364
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 16/211 (7%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ KT NVF+KNLD + ++ L F +G I S V +D G SK +GFV++E
Sbjct: 125 QRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYE 184
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKETVDKFQGLNL 134
A+ A A++ +NG ++++ +VG K ER +E+K F N+
Sbjct: 185 TAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANF-------------TNI 231
Query: 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194
Y+KN+ + DE +ELF + G ITS + RD G S+G GFV + E A+ A+ +N
Sbjct: 232 YVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLND 291
Query: 195 KMIVSKPLYVAVAQRKEERRARLQAQFSQMR 225
+ LYV AQ+K ER L+ Q+ R
Sbjct: 292 IEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V LD S T+ L ++F G + S V RD +S + +VN+ +++D KA+E
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
LN + + +Q+ + A+++T QG N++IKNL +ID++ L
Sbjct: 109 LNYTVIKGKPCRIMWSQR------------DPALRKT---GQG-NVFIKNLDHAIDNKAL 152
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ F+ FG I SCKV +D G SKG GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 153 HDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHI 212
Query: 209 RKEERRAR---LQAQFSQM 224
K+ER ++ ++A F+ +
Sbjct: 213 PKKERMSKFEEMKANFTNI 231
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 380 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKV 439
+ L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 440 AEAMEV 445
EAM V
Sbjct: 713 DEAMSV 718
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 65/179 (36%)
Query: 6 KQVFVGHFLRKQERET----------VAIKTKFN--NVFVKNLDESTTDEDLKKIFGEYG 53
++++VG +K ERE + ++K+ N+++KNL++ DE L+ +F +G
Sbjct: 297 QKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFG 356
Query: 54 TITSAVVM------------------------------------------RDGD------ 65
TITSA V+ + GD
Sbjct: 357 TITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKG 416
Query: 66 -----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 119
GKSK FGFV F N D+A KAV +N K + + YV AQ+K R+ +L+ +
Sbjct: 417 EKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQ 475
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 11/208 (5%)
Query: 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 146
Query: 78 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 137
+ A KA+E +NG +DR+ +VG+ + + ERE EL + ++ N+YIK
Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----------NVYIK 196
Query: 138 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197
N G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 198 VSKPLYVAVAQRKEERRARLQAQFSQMR 225
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 88
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 89 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 148
+N + + +Q+ + G N++IKNL SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----------------NVFIKNLDKSIDNKAL 115
Query: 149 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
+ FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 209 RKEERRARLQAQ 220
++ER A L A+
Sbjct: 175 SRKEREAELGAK 186
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPE 433
P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE
Sbjct: 553 PLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 610
Query: 434 ALKAKVAEAMEVLRS 448
+L++KV EA+ VL++
Sbjct: 611 SLRSKVDEAVAVLQA 625
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 6/210 (2%)
Query: 3 INDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSA 58
+N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG S
Sbjct: 170 LNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESV 228
Query: 59 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 118
V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +F
Sbjct: 229 KVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Query: 119 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 178
E+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V
Sbjct: 289 ERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVC 347
Query: 179 FSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208
FS+ EEA++A+ EMNG+++ SKPL+V + Q
Sbjct: 348 FSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 12/216 (5%)
Query: 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 84
K+ N+F+KNLD+S + L +F +G I S V+ D +G SK + +V+F++ A +
Sbjct: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANR 160
Query: 85 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144
A+ +NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD ID
Sbjct: 161 AIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDID 211
Query: 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204
DEKLKELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV
Sbjct: 212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Query: 205 AVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY 240
AQ+K ER A L+ R S PP +P+Y
Sbjct: 272 GRAQKKIERLAELRR--RFERLRLKEKSRPPGVPIY 305
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFENADDAAKAVEALNG 91
V +LD T++ L K F G + + RD +S +G+VNF DA A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL 151
+ + + + +Q + G N++IKNL SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG----------------NIFIKNLDKSIDNRALFYL 125
Query: 152 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211
FS FG I SCKV+ D +G SKG +V F + A+RA+ MNG + ++ +YV + E
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE 184
Query: 212 ER----RARLQAQFSQMRPVAMGPSV 233
ER R R +A F+ + +G +
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDI 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,353,035
Number of Sequences: 539616
Number of extensions: 8609386
Number of successful extensions: 35515
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 867
Number of HSP's that attempted gapping in prelim test: 30741
Number of HSP's gapped (non-prelim): 3669
length of query: 472
length of database: 191,569,459
effective HSP length: 121
effective length of query: 351
effective length of database: 126,275,923
effective search space: 44322848973
effective search space used: 44322848973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)