Query 012034
Match_columns 472
No_of_seqs 346 out of 2099
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 7.2E-68 1.6E-72 568.7 41.6 405 1-447 152-562 (562)
2 KOG0148 Apoptosis-promoting RN 100.0 1.2E-33 2.5E-38 259.4 17.0 178 28-212 62-240 (321)
3 TIGR01659 sex-lethal sex-letha 100.0 2.7E-32 5.9E-37 272.8 23.4 169 25-211 104-276 (346)
4 TIGR01628 PABP-1234 polyadenyl 100.0 3.7E-30 8E-35 276.7 31.3 196 2-214 66-265 (562)
5 TIGR01645 half-pint poly-U bin 100.0 1.3E-30 2.8E-35 273.6 19.4 178 26-210 105-284 (612)
6 KOG0117 Heterogeneous nuclear 100.0 2.2E-29 4.7E-34 245.6 26.0 184 26-216 81-337 (506)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.2E-30 2E-34 258.2 20.8 204 3-212 70-351 (352)
8 KOG0123 Polyadenylate-binding 100.0 1.8E-30 3.9E-35 261.0 15.1 224 1-224 138-363 (369)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-29 4.7E-34 255.5 20.3 167 27-211 2-172 (352)
10 KOG0144 RNA-binding protein CU 100.0 2.3E-29 4.9E-34 244.3 13.4 172 26-214 32-210 (510)
11 smart00517 PolyA C-terminal do 100.0 1E-29 2.2E-34 186.4 5.5 64 386-449 1-64 (64)
12 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-27 3.2E-32 250.5 20.3 179 25-210 86-266 (457)
13 TIGR01648 hnRNP-R-Q heterogene 100.0 4.8E-27 1E-31 246.5 20.9 180 26-212 56-309 (578)
14 KOG0145 RNA-binding protein EL 99.9 3.2E-27 6.9E-32 215.7 13.0 169 25-211 38-210 (360)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 6.9E-26 1.5E-30 238.4 20.0 202 2-210 64-351 (481)
16 PF00658 PABP: Poly-adenylate 99.9 2.3E-27 5.1E-32 180.6 6.2 71 376-446 2-72 (72)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-25 2.5E-30 236.8 17.7 178 27-209 274-479 (481)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.8E-25 1E-29 234.6 19.9 186 26-211 293-503 (509)
19 KOG0127 Nucleolar protein fibr 99.9 1.6E-25 3.6E-30 223.0 14.4 183 29-211 6-197 (678)
20 KOG0145 RNA-binding protein EL 99.9 8.6E-25 1.9E-29 199.8 16.3 202 3-210 108-358 (360)
21 KOG0131 Splicing factor 3b, su 99.9 2.1E-25 4.5E-30 194.4 10.8 171 26-213 7-180 (203)
22 KOG0123 Polyadenylate-binding 99.9 9.1E-25 2E-29 219.7 17.1 273 31-451 79-351 (369)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1E-24 2.3E-29 232.0 17.1 178 25-208 172-373 (509)
24 TIGR01622 SF-CC1 splicing fact 99.9 8.2E-24 1.8E-28 222.2 21.8 208 2-212 154-450 (457)
25 KOG0144 RNA-binding protein CU 99.9 4.8E-25 1E-29 214.3 11.4 209 3-211 96-505 (510)
26 KOG0146 RNA-binding protein ET 99.9 4.5E-25 9.8E-30 202.4 9.6 187 26-212 17-367 (371)
27 KOG0109 RNA-binding protein LA 99.9 8E-25 1.7E-29 203.2 9.9 149 29-211 3-151 (346)
28 KOG0127 Nucleolar protein fibr 99.9 1.6E-23 3.4E-28 208.9 16.3 186 28-213 117-381 (678)
29 KOG0124 Polypyrimidine tract-b 99.9 2E-23 4.3E-28 198.9 12.6 174 27-207 112-287 (544)
30 TIGR01645 half-pint poly-U bin 99.9 4.9E-21 1.1E-25 201.6 20.9 105 2-106 173-283 (612)
31 KOG0110 RNA-binding protein (R 99.9 5E-22 1.1E-26 204.4 13.0 178 27-213 514-696 (725)
32 KOG4205 RNA-binding protein mu 99.8 2.1E-21 4.6E-26 188.9 8.7 174 27-214 5-180 (311)
33 KOG0147 Transcriptional coacti 99.8 1.6E-20 3.5E-25 188.6 7.3 181 25-210 176-358 (549)
34 KOG0148 Apoptosis-promoting RN 99.8 1.3E-19 2.9E-24 167.1 10.0 140 26-212 4-144 (321)
35 KOG0147 Transcriptional coacti 99.8 3.3E-18 7.2E-23 172.1 12.6 204 3-210 245-528 (549)
36 KOG4212 RNA-binding protein hn 99.8 1.7E-17 3.8E-22 161.8 16.1 182 25-207 41-291 (608)
37 KOG4206 Spliceosomal protein s 99.7 3.4E-17 7.3E-22 148.8 14.5 176 27-208 8-220 (221)
38 PLN03134 glycine-rich RNA-bind 99.7 3.5E-17 7.5E-22 144.1 10.3 83 26-108 32-115 (144)
39 KOG1548 Transcription elongati 99.7 4.9E-16 1.1E-20 148.3 17.2 182 25-209 131-351 (382)
40 KOG0124 Polypyrimidine tract-b 99.7 2.4E-16 5.3E-21 150.7 14.5 206 2-207 179-532 (544)
41 KOG0105 Alternative splicing f 99.7 5.1E-16 1.1E-20 135.9 12.8 172 26-206 4-186 (241)
42 KOG0132 RNA polymerase II C-te 99.6 4.5E-15 9.8E-20 154.3 17.1 111 25-153 418-528 (894)
43 KOG0110 RNA-binding protein (R 99.6 1.1E-15 2.4E-20 157.9 12.2 178 26-208 383-596 (725)
44 PF00076 RRM_1: RNA recognitio 99.6 1E-15 2.3E-20 117.3 8.6 70 31-100 1-70 (70)
45 PLN03134 glycine-rich RNA-bind 99.6 1.8E-15 3.9E-20 133.2 11.0 81 130-210 33-114 (144)
46 KOG4211 Splicing factor hnRNP- 99.6 4.3E-15 9.4E-20 148.0 14.2 177 28-215 10-187 (510)
47 KOG0149 Predicted RNA-binding 99.6 9.5E-16 2.1E-20 139.7 7.3 80 25-105 9-89 (247)
48 COG0724 RNA-binding proteins ( 99.6 4.3E-15 9.2E-20 143.6 12.2 164 28-191 115-286 (306)
49 KOG0106 Alternative splicing f 99.6 5E-16 1.1E-20 142.7 4.3 168 29-210 2-171 (216)
50 KOG0122 Translation initiation 99.6 3.2E-15 6.9E-20 136.7 8.8 102 6-107 163-269 (270)
51 TIGR01648 hnRNP-R-Q heterogene 99.6 4.8E-15 1E-19 156.3 9.2 149 3-159 209-369 (578)
52 TIGR01659 sex-lethal sex-letha 99.6 1.1E-14 2.4E-19 146.1 11.4 99 2-106 173-274 (346)
53 KOG1457 RNA binding protein (c 99.6 3.1E-14 6.8E-19 128.3 12.5 169 26-197 32-273 (284)
54 KOG0120 Splicing factor U2AF, 99.5 1.2E-14 2.6E-19 148.4 9.2 186 26-211 287-493 (500)
55 PF00076 RRM_1: RNA recognitio 99.5 3.6E-14 7.7E-19 108.7 9.3 70 134-203 1-70 (70)
56 PF14259 RRM_6: RNA recognitio 99.5 3.5E-14 7.6E-19 109.2 8.8 70 31-100 1-70 (70)
57 KOG0125 Ataxin 2-binding prote 99.5 1.3E-14 2.9E-19 137.6 7.2 86 21-107 89-174 (376)
58 KOG0107 Alternative splicing f 99.5 4.1E-14 8.9E-19 123.3 7.3 78 27-108 9-86 (195)
59 KOG1365 RNA-binding protein Fu 99.5 7.5E-13 1.6E-17 127.9 16.2 184 26-211 159-363 (508)
60 PLN03120 nucleic acid binding 99.5 1.1E-13 2.4E-18 130.5 9.9 77 28-107 4-80 (260)
61 PF14259 RRM_6: RNA recognitio 99.5 4.6E-13 1E-17 102.9 9.5 70 134-203 1-70 (70)
62 KOG0149 Predicted RNA-binding 99.5 1.1E-13 2.5E-18 126.2 6.9 78 131-209 12-90 (247)
63 KOG0113 U1 small nuclear ribon 99.4 2.4E-13 5.2E-18 127.7 8.6 81 25-105 98-179 (335)
64 PLN03213 repressor of silencin 99.4 3.7E-13 7.9E-18 133.6 9.8 80 25-107 7-88 (759)
65 smart00362 RRM_2 RNA recogniti 99.4 7E-13 1.5E-17 101.0 9.0 72 30-102 1-72 (72)
66 KOG0126 Predicted RNA-binding 99.4 2.1E-14 4.6E-19 125.6 -0.8 79 27-105 34-113 (219)
67 KOG0125 Ataxin 2-binding prote 99.4 5.5E-13 1.2E-17 126.7 8.3 80 130-210 95-174 (376)
68 KOG0114 Predicted RNA-binding 99.4 1.7E-12 3.7E-17 103.5 9.6 83 25-109 15-97 (124)
69 KOG4212 RNA-binding protein hn 99.4 3E-12 6.6E-17 125.6 13.3 72 132-207 537-608 (608)
70 PLN03121 nucleic acid binding 99.4 1.2E-12 2.7E-17 121.5 9.4 78 27-107 4-81 (243)
71 KOG0132 RNA polymerase II C-te 99.4 2.3E-11 5.1E-16 127.0 19.5 81 128-213 418-498 (894)
72 KOG0122 Translation initiation 99.4 1.3E-12 2.9E-17 119.6 8.7 81 130-210 188-269 (270)
73 PLN03120 nucleic acid binding 99.4 2.3E-12 5E-17 121.6 10.2 75 131-208 4-78 (260)
74 KOG0121 Nuclear cap-binding pr 99.4 1.2E-12 2.7E-17 108.3 7.2 82 25-106 33-115 (153)
75 KOG0108 mRNA cleavage and poly 99.4 1.5E-12 3.2E-17 132.6 8.9 85 29-113 19-104 (435)
76 KOG4207 Predicted splicing fac 99.4 8.6E-13 1.9E-17 117.8 6.0 80 26-105 11-91 (256)
77 smart00360 RRM RNA recognition 99.4 3.5E-12 7.5E-17 96.6 8.7 70 33-102 1-71 (71)
78 cd00590 RRM RRM (RNA recogniti 99.3 7.4E-12 1.6E-16 95.8 9.9 74 30-103 1-74 (74)
79 KOG4207 Predicted splicing fac 99.3 1.3E-12 2.7E-17 116.7 5.9 78 131-208 13-91 (256)
80 KOG1190 Polypyrimidine tract-b 99.3 1.2E-11 2.5E-16 120.8 12.9 175 28-209 297-490 (492)
81 KOG1190 Polypyrimidine tract-b 99.3 3.5E-12 7.6E-17 124.4 9.2 175 26-208 26-224 (492)
82 smart00362 RRM_2 RNA recogniti 99.3 1E-11 2.2E-16 94.4 9.4 72 133-205 1-72 (72)
83 KOG0107 Alternative splicing f 99.3 5.2E-12 1.1E-16 110.3 7.5 77 130-210 9-85 (195)
84 PLN03213 repressor of silencin 99.3 1.8E-11 3.8E-16 121.8 11.1 79 129-210 8-88 (759)
85 KOG0111 Cyclophilin-type pepti 99.3 1.9E-12 4.1E-17 116.5 3.2 82 26-107 8-90 (298)
86 PLN03121 nucleic acid binding 99.3 2.3E-11 5E-16 113.1 10.0 76 130-208 4-79 (243)
87 KOG0130 RNA-binding protein RB 99.3 7.1E-12 1.5E-16 104.6 5.8 83 26-108 70-153 (170)
88 KOG0113 U1 small nuclear ribon 99.2 2.1E-11 4.5E-16 114.8 9.0 82 130-211 100-182 (335)
89 KOG0114 Predicted RNA-binding 99.2 5.3E-11 1.1E-15 95.0 9.9 79 132-212 19-97 (124)
90 KOG0126 Predicted RNA-binding 99.2 1E-12 2.3E-17 115.1 -0.1 76 132-207 36-112 (219)
91 smart00360 RRM RNA recognition 99.2 4.4E-11 9.5E-16 90.5 8.4 70 136-205 1-71 (71)
92 cd00590 RRM RRM (RNA recogniti 99.2 8.5E-11 1.8E-15 89.8 10.0 74 133-206 1-74 (74)
93 smart00361 RRM_1 RNA recogniti 99.2 3.4E-11 7.4E-16 92.6 7.5 60 42-101 2-69 (70)
94 KOG0117 Heterogeneous nuclear 99.2 1.7E-11 3.6E-16 121.0 7.0 78 26-110 257-334 (506)
95 KOG4849 mRNA cleavage factor I 99.2 1.1E-09 2.4E-14 105.0 18.8 79 132-210 81-162 (498)
96 KOG0121 Nuclear cap-binding pr 99.2 3.2E-11 6.9E-16 100.0 6.7 83 130-212 35-118 (153)
97 PF13893 RRM_5: RNA recognitio 99.2 4.7E-11 1E-15 87.5 6.7 56 45-104 1-56 (56)
98 KOG0130 RNA-binding protein RB 99.2 6.9E-11 1.5E-15 98.8 7.9 84 128-211 69-153 (170)
99 KOG0111 Cyclophilin-type pepti 99.2 1.3E-11 2.9E-16 111.1 3.8 80 131-210 10-90 (298)
100 KOG0146 RNA-binding protein ET 99.2 2.5E-11 5.5E-16 112.3 5.6 83 26-108 283-366 (371)
101 COG0724 RNA-binding proteins ( 99.2 5.9E-11 1.3E-15 114.6 8.5 79 131-209 115-194 (306)
102 KOG4454 RNA binding protein (R 99.2 5.9E-12 1.3E-16 113.5 1.0 140 26-193 7-146 (267)
103 KOG1456 Heterogeneous nuclear 99.2 1.2E-09 2.6E-14 105.7 16.5 166 26-211 29-200 (494)
104 PF13893 RRM_5: RNA recognitio 99.2 2E-10 4.3E-15 84.2 8.5 56 148-207 1-56 (56)
105 KOG0108 mRNA cleavage and poly 99.1 1E-10 2.2E-15 119.3 8.6 84 132-215 19-103 (435)
106 KOG0131 Splicing factor 3b, su 99.1 8.2E-11 1.8E-15 103.5 5.8 102 3-109 76-179 (203)
107 KOG0226 RNA-binding proteins [ 99.1 5.9E-11 1.3E-15 109.4 4.3 173 27-211 95-271 (290)
108 smart00361 RRM_1 RNA recogniti 99.1 3.5E-10 7.5E-15 87.0 8.0 60 145-204 2-69 (70)
109 KOG0129 Predicted RNA-binding 99.1 6.4E-10 1.4E-14 112.2 12.0 161 26-191 257-432 (520)
110 KOG0120 Splicing factor U2AF, 99.1 1.8E-10 3.8E-15 118.2 6.3 178 26-209 173-368 (500)
111 KOG1456 Heterogeneous nuclear 99.1 1.9E-09 4.2E-14 104.2 13.0 198 3-208 94-361 (494)
112 KOG0109 RNA-binding protein LA 99.0 3.1E-10 6.7E-15 106.5 6.1 91 2-107 60-150 (346)
113 KOG4211 Splicing factor hnRNP- 99.0 7E-09 1.5E-13 104.1 14.0 163 26-190 101-339 (510)
114 KOG4205 RNA-binding protein mu 99.0 5.2E-10 1.1E-14 109.5 5.4 106 3-109 72-178 (311)
115 KOG4206 Spliceosomal protein s 99.0 1.1E-09 2.4E-14 100.1 6.8 81 133-215 11-95 (221)
116 KOG0415 Predicted peptidyl pro 99.0 7.5E-10 1.6E-14 106.3 5.9 84 26-109 237-321 (479)
117 KOG0128 RNA-binding protein SA 98.9 4.8E-11 1E-15 126.2 -3.1 149 26-209 665-814 (881)
118 KOG0105 Alternative splicing f 98.9 1.5E-09 3.3E-14 95.6 6.0 77 131-209 6-82 (241)
119 KOG4208 Nucleolar RNA-binding 98.9 2.8E-09 6.1E-14 95.9 7.1 82 26-107 47-130 (214)
120 KOG0226 RNA-binding proteins [ 98.9 2.6E-09 5.6E-14 98.7 7.0 90 18-107 180-270 (290)
121 KOG4210 Nuclear localization s 98.9 1.3E-09 2.9E-14 106.3 4.1 175 27-210 87-264 (285)
122 KOG0112 Large RNA-binding prot 98.8 1.7E-09 3.7E-14 115.1 3.6 161 25-210 369-531 (975)
123 KOG4661 Hsp27-ERE-TATA-binding 98.8 5.7E-09 1.2E-13 105.7 7.0 81 26-106 403-484 (940)
124 KOG0533 RRM motif-containing p 98.8 1.2E-08 2.5E-13 96.3 8.2 83 25-107 80-162 (243)
125 KOG0153 Predicted RNA-binding 98.8 7.3E-09 1.6E-13 99.7 6.9 77 25-106 225-302 (377)
126 KOG0415 Predicted peptidyl pro 98.8 1.3E-08 2.8E-13 98.0 6.5 83 130-212 238-321 (479)
127 PF04059 RRM_2: RNA recognitio 98.8 5.7E-08 1.2E-12 78.8 9.3 78 29-106 2-86 (97)
128 KOG0153 Predicted RNA-binding 98.7 4.5E-08 9.8E-13 94.4 8.1 79 126-209 223-302 (377)
129 KOG4208 Nucleolar RNA-binding 98.7 4.2E-08 9E-13 88.4 7.3 79 132-210 50-130 (214)
130 KOG4660 Protein Mei2, essentia 98.6 2.5E-08 5.5E-13 101.7 5.2 174 25-209 72-249 (549)
131 KOG0116 RasGAP SH3 binding pro 98.6 5.6E-08 1.2E-12 98.9 6.6 80 26-106 286-366 (419)
132 KOG4661 Hsp27-ERE-TATA-binding 98.6 8.1E-08 1.8E-12 97.5 7.2 80 130-209 404-484 (940)
133 KOG1365 RNA-binding protein Fu 98.6 2.8E-07 6.1E-12 89.8 9.9 165 25-192 57-226 (508)
134 KOG0533 RRM motif-containing p 98.5 2.3E-07 5E-12 87.6 8.1 80 131-210 83-162 (243)
135 KOG1548 Transcription elongati 98.5 3.3E-07 7.2E-12 88.4 7.5 79 130-208 133-219 (382)
136 KOG0151 Predicted splicing reg 98.4 2.6E-07 5.7E-12 96.3 6.0 82 25-106 171-256 (877)
137 KOG4307 RNA binding protein RB 98.4 6.7E-07 1.4E-11 93.1 8.8 73 134-206 870-943 (944)
138 KOG2193 IGF-II mRNA-binding pr 98.3 1.1E-07 2.4E-12 93.6 0.4 153 29-210 2-157 (584)
139 PF04059 RRM_2: RNA recognitio 98.3 3.3E-06 7.2E-11 68.5 8.9 79 132-210 2-87 (97)
140 KOG4849 mRNA cleavage factor I 98.3 2E-05 4.4E-10 76.2 15.2 84 25-108 77-163 (498)
141 KOG4209 Splicing factor RNPS1, 98.3 1E-06 2.2E-11 83.5 6.0 81 25-106 98-179 (231)
142 PF11608 Limkain-b1: Limkain b 98.2 4.6E-06 1E-10 64.7 7.0 72 28-108 2-78 (90)
143 KOG4454 RNA binding protein (R 98.2 7.7E-07 1.7E-11 80.8 2.9 78 132-210 10-87 (267)
144 KOG0116 RasGAP SH3 binding pro 98.2 3.2E-06 6.9E-11 86.2 6.5 77 131-208 288-365 (419)
145 KOG4209 Splicing factor RNPS1, 98.1 3.2E-06 7E-11 80.0 5.9 82 128-210 98-180 (231)
146 KOG0151 Predicted splicing reg 98.1 5.7E-06 1.2E-10 86.6 6.6 80 130-209 173-256 (877)
147 KOG4307 RNA binding protein RB 98.1 4E-06 8.6E-11 87.5 5.3 180 26-207 309-511 (944)
148 KOG4660 Protein Mei2, essentia 98.1 2.3E-06 4.9E-11 87.7 3.3 69 131-203 75-143 (549)
149 KOG0106 Alternative splicing f 98.0 3.9E-06 8.4E-11 77.7 4.1 71 133-210 3-73 (216)
150 PF11608 Limkain-b1: Limkain b 98.0 1.8E-05 3.8E-10 61.5 7.0 70 132-210 3-77 (90)
151 KOG1457 RNA binding protein (c 98.0 1.4E-05 2.9E-10 73.1 7.3 83 132-214 35-122 (284)
152 PF08777 RRM_3: RNA binding mo 97.9 2.7E-05 5.8E-10 64.7 6.3 78 131-213 1-83 (105)
153 KOG1995 Conserved Zn-finger pr 97.7 3.5E-05 7.5E-10 75.4 4.3 84 26-109 64-156 (351)
154 KOG4676 Splicing factor, argin 97.7 1.8E-05 3.9E-10 77.7 2.0 162 28-198 7-214 (479)
155 KOG0115 RNA-binding protein p5 97.6 9.2E-05 2E-09 69.2 6.0 89 82-195 7-95 (275)
156 KOG2314 Translation initiation 97.6 3.8E-05 8.3E-10 78.7 3.2 77 26-102 56-139 (698)
157 KOG0128 RNA-binding protein SA 97.6 5.2E-06 1.1E-10 88.8 -3.1 161 29-198 572-735 (881)
158 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.6E-09 70.6 6.2 80 28-107 114-203 (480)
159 PF08777 RRM_3: RNA binding mo 97.6 0.00026 5.5E-09 58.8 7.4 71 29-104 2-77 (105)
160 KOG1995 Conserved Zn-finger pr 97.5 7.1E-05 1.5E-09 73.2 4.0 83 130-212 65-156 (351)
161 KOG1924 RhoA GTPase effector D 97.4 0.0008 1.7E-08 71.7 10.5 12 390-401 673-684 (1102)
162 KOG4210 Nuclear localization s 97.4 9.5E-05 2.1E-09 72.4 3.3 82 27-109 184-266 (285)
163 KOG1855 Predicted RNA-binding 97.3 0.00017 3.7E-09 71.9 3.4 96 6-101 204-318 (484)
164 KOG0943 Predicted ubiquitin-pr 97.2 0.00017 3.7E-09 79.3 2.8 65 389-453 2606-2672(3015)
165 KOG3152 TBP-binding protein, a 97.2 0.00027 5.9E-09 66.1 3.5 72 27-98 73-157 (278)
166 COG5175 MOT2 Transcriptional r 97.2 0.00079 1.7E-08 65.2 6.7 81 130-210 113-203 (480)
167 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.00079 1.7E-08 48.5 4.6 52 29-86 2-53 (53)
168 KOG2202 U2 snRNP splicing fact 97.0 0.00041 8.8E-09 65.1 2.5 64 43-106 83-147 (260)
169 KOG2314 Translation initiation 97.0 0.0013 2.8E-08 67.8 6.0 76 131-206 58-140 (698)
170 KOG2202 U2 snRNP splicing fact 96.9 0.00041 8.9E-09 65.1 1.9 68 146-213 83-151 (260)
171 KOG1996 mRNA splicing factor [ 96.8 0.0044 9.5E-08 59.1 7.6 70 145-214 300-371 (378)
172 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0039 8.5E-08 51.0 6.0 76 27-104 5-89 (100)
173 KOG1924 RhoA GTPase effector D 96.7 0.0085 1.8E-07 64.2 9.6 10 413-422 718-727 (1102)
174 KOG1855 Predicted RNA-binding 96.7 0.0012 2.7E-08 65.9 3.2 68 129-196 229-310 (484)
175 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0046 1E-07 44.5 5.1 51 133-189 3-53 (53)
176 KOG1996 mRNA splicing factor [ 96.5 0.0063 1.4E-07 58.0 6.8 63 43-105 301-365 (378)
177 KOG0115 RNA-binding protein p5 96.5 0.0026 5.7E-08 59.7 4.0 65 29-93 32-96 (275)
178 KOG3152 TBP-binding protein, a 96.3 0.0022 4.7E-08 60.2 2.4 71 132-202 75-158 (278)
179 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.022 4.7E-07 46.7 7.8 74 132-207 7-89 (100)
180 KOG0129 Predicted RNA-binding 95.9 0.021 4.5E-07 58.8 7.1 63 26-88 368-432 (520)
181 PF08675 RNA_bind: RNA binding 95.9 0.026 5.7E-07 44.1 5.9 55 28-90 9-63 (87)
182 KOG2193 IGF-II mRNA-binding pr 95.8 0.014 3E-07 58.4 5.2 81 133-218 3-84 (584)
183 KOG2253 U1 snRNP complex, subu 95.8 0.00058 1.3E-08 71.8 -4.7 71 26-104 38-108 (668)
184 PF08952 DUF1866: Domain of un 95.7 0.052 1.1E-06 47.3 7.8 56 147-210 52-107 (146)
185 PF10309 DUF2414: Protein of u 95.7 0.052 1.1E-06 40.2 6.5 55 27-89 4-62 (62)
186 KOG2416 Acinus (induces apopto 95.6 0.01 2.3E-07 61.7 3.8 81 131-216 444-528 (718)
187 KOG2416 Acinus (induces apopto 95.6 0.0077 1.7E-07 62.7 2.8 74 26-104 442-519 (718)
188 PF08952 DUF1866: Domain of un 95.4 0.033 7.2E-07 48.5 5.5 73 27-107 26-107 (146)
189 PF15023 DUF4523: Protein of u 95.1 0.054 1.2E-06 46.6 5.7 75 25-106 83-161 (166)
190 KOG2068 MOT2 transcription fac 94.7 0.016 3.5E-07 56.7 2.0 79 29-107 78-163 (327)
191 PF10567 Nab6_mRNP_bdg: RNA-re 94.6 1.2 2.7E-05 43.1 14.0 183 27-210 14-232 (309)
192 PF10309 DUF2414: Protein of u 94.2 0.21 4.6E-06 37.0 6.4 53 133-192 7-62 (62)
193 KOG4676 Splicing factor, argin 94.1 0.11 2.5E-06 51.7 6.3 72 133-205 9-84 (479)
194 KOG0112 Large RNA-binding prot 94.1 0.062 1.3E-06 58.8 4.9 76 25-105 452-529 (975)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 94.0 0.067 1.5E-06 48.7 4.3 72 26-97 5-83 (176)
196 PF15023 DUF4523: Protein of u 93.6 0.18 4E-06 43.4 5.7 72 131-209 86-161 (166)
197 PF07576 BRAP2: BRCA1-associat 93.4 0.62 1.3E-05 38.9 8.5 69 27-96 12-81 (110)
198 KOG2068 MOT2 transcription fac 93.3 0.039 8.5E-07 54.1 1.5 79 132-210 78-163 (327)
199 PF04847 Calcipressin: Calcipr 93.2 0.23 4.9E-06 45.5 6.2 61 144-209 8-70 (184)
200 PF11767 SET_assoc: Histone ly 92.6 0.44 9.6E-06 35.8 6.0 56 38-101 10-65 (66)
201 PF11767 SET_assoc: Histone ly 92.6 0.43 9.3E-06 35.9 5.9 56 141-204 10-65 (66)
202 PF07576 BRAP2: BRCA1-associat 92.4 0.81 1.8E-05 38.2 8.0 64 134-198 16-80 (110)
203 KOG2893 Zn finger protein [Gen 92.0 8.6 0.00019 36.1 14.7 11 139-149 16-26 (341)
204 PF04847 Calcipressin: Calcipr 91.9 0.24 5.2E-06 45.4 4.6 62 41-107 8-71 (184)
205 KOG0804 Cytoplasmic Zn-finger 90.9 0.63 1.4E-05 47.5 6.7 82 14-96 60-142 (493)
206 KOG2591 c-Mpl binding protein, 90.8 0.54 1.2E-05 49.1 6.3 69 131-205 175-247 (684)
207 PF03880 DbpA: DbpA RNA bindin 90.0 1 2.3E-05 34.6 6.0 59 38-104 11-74 (74)
208 KOG2591 c-Mpl binding protein, 89.7 0.61 1.3E-05 48.7 5.6 68 26-99 173-244 (684)
209 KOG4285 Mitotic phosphoprotein 89.3 0.92 2E-05 44.0 6.1 73 28-107 197-270 (350)
210 PF08675 RNA_bind: RNA binding 89.1 1.6 3.5E-05 34.3 6.3 55 133-194 10-64 (87)
211 PF03467 Smg4_UPF3: Smg-4/UPF3 88.5 0.68 1.5E-05 42.2 4.5 78 131-208 7-96 (176)
212 KOG4574 RNA-binding protein (c 87.9 0.32 6.9E-06 53.1 2.2 72 31-107 301-374 (1007)
213 KOG2135 Proteins containing th 87.0 0.28 6E-06 50.2 1.2 78 25-108 369-447 (526)
214 KOG0804 Cytoplasmic Zn-finger 86.7 1.5 3.3E-05 44.8 6.1 67 131-198 74-141 (493)
215 KOG2135 Proteins containing th 86.5 0.4 8.6E-06 49.1 2.0 61 144-210 386-446 (526)
216 KOG4574 RNA-binding protein (c 86.2 0.5 1.1E-05 51.6 2.6 72 134-210 301-374 (1007)
217 PF03880 DbpA: DbpA RNA bindin 86.0 2.8 6E-05 32.2 6.1 59 141-207 11-74 (74)
218 PF07292 NID: Nmi/IFP 35 domai 85.2 0.68 1.5E-05 36.9 2.3 71 72-152 1-73 (88)
219 KOG4285 Mitotic phosphoprotein 83.9 2.3 4.9E-05 41.4 5.6 58 136-200 202-259 (350)
220 KOG2253 U1 snRNP complex, subu 81.8 0.69 1.5E-05 49.4 1.4 69 131-207 40-108 (668)
221 PRK14548 50S ribosomal protein 78.9 6.6 0.00014 31.0 5.7 59 29-89 21-81 (84)
222 KOG2318 Uncharacterized conser 77.4 6.8 0.00015 41.5 6.9 76 131-206 174-304 (650)
223 KOG2318 Uncharacterized conser 74.2 8.1 0.00018 40.9 6.4 80 25-104 171-305 (650)
224 TIGR02542 B_forsyth_147 Bacter 73.0 6.8 0.00015 32.6 4.5 111 36-182 11-129 (145)
225 TIGR03636 L23_arch archaeal ri 72.6 13 0.00028 28.9 5.8 58 30-89 15-74 (77)
226 PF10567 Nab6_mRNP_bdg: RNA-re 70.9 9.5 0.00021 37.1 5.7 82 127-208 11-106 (309)
227 PF14111 DUF4283: Domain of un 70.0 4.4 9.5E-05 35.4 3.1 121 29-166 16-140 (153)
228 KOG4213 RNA-binding protein La 68.6 4.2 9.2E-05 36.6 2.6 59 26-88 109-169 (205)
229 PF15513 DUF4651: Domain of un 68.3 11 0.00023 27.9 4.2 20 43-62 9-28 (62)
230 KOG3424 40S ribosomal protein 65.0 14 0.0003 31.0 4.7 46 38-84 33-84 (132)
231 PF03468 XS: XS domain; Inter 63.0 6.7 0.00014 33.1 2.7 40 40-81 29-68 (116)
232 KOG2891 Surface glycoprotein [ 60.7 18 0.0004 34.8 5.4 34 131-164 149-194 (445)
233 KOG4410 5-formyltetrahydrofola 60.4 16 0.00034 35.4 4.9 50 27-80 329-378 (396)
234 KOG4019 Calcineurin-mediated s 57.8 6.9 0.00015 35.3 1.9 73 133-210 12-90 (193)
235 PRK01178 rps24e 30S ribosomal 57.8 31 0.00067 28.2 5.6 47 38-85 29-81 (99)
236 PTZ00191 60S ribosomal protein 53.8 36 0.00079 29.8 5.7 58 28-87 81-140 (145)
237 PF15513 DUF4651: Domain of un 53.3 25 0.00054 26.0 3.9 20 146-165 9-28 (62)
238 KOG4483 Uncharacterized conser 53.1 19 0.00042 36.4 4.4 54 28-87 391-445 (528)
239 PRK14548 50S ribosomal protein 51.7 48 0.001 26.2 5.6 58 133-192 22-81 (84)
240 KOG4019 Calcineurin-mediated s 51.4 9.5 0.00021 34.5 1.8 75 28-107 10-90 (193)
241 TIGR03636 L23_arch archaeal ri 45.6 72 0.0016 24.7 5.7 57 133-191 15-73 (77)
242 PTZ00071 40S ribosomal protein 45.4 56 0.0012 28.2 5.4 46 38-84 34-86 (132)
243 PF03468 XS: XS domain; Inter 44.5 23 0.0005 29.8 3.0 39 143-183 29-67 (116)
244 KOG1984 Vesicle coat complex C 43.9 4E+02 0.0086 30.4 12.8 121 243-366 38-160 (1007)
245 PF07530 PRE_C2HC: Associated 43.2 29 0.00062 26.2 3.0 63 43-108 2-66 (68)
246 PHA03378 EBNA-3B; Provisional 42.4 3.4E+02 0.0074 30.0 11.6 8 133-140 540-547 (991)
247 KOG2295 C2H2 Zn-finger protein 42.3 4.1 8.9E-05 42.8 -2.2 72 26-97 229-301 (648)
248 COG5594 Uncharacterized integr 41.5 1.9 4E-05 47.6 -5.0 38 26-63 206-246 (827)
249 PF02714 DUF221: Domain of unk 40.1 48 0.001 33.0 5.1 34 72-107 1-34 (325)
250 KOG4410 5-formyltetrahydrofola 39.8 32 0.0007 33.3 3.4 47 132-183 331-378 (396)
251 COG5638 Uncharacterized conser 38.8 89 0.0019 31.9 6.5 38 129-166 144-186 (622)
252 COG5353 Uncharacterized protei 38.1 1.3E+02 0.0028 26.4 6.5 58 25-82 84-155 (161)
253 PHA03378 EBNA-3B; Provisional 35.1 6.7E+02 0.014 27.9 12.9 10 40-49 327-336 (991)
254 smart00596 PRE_C2HC PRE_C2HC d 34.9 41 0.00089 25.5 2.7 63 43-108 2-66 (69)
255 KOG4365 Uncharacterized conser 34.6 8.5 0.00018 39.4 -1.3 81 133-214 5-86 (572)
256 cd04908 ACT_Bt0572_1 N-termina 34.2 1.8E+02 0.0039 21.1 7.0 44 42-88 15-59 (66)
257 PF01282 Ribosomal_S24e: Ribos 33.2 1.6E+02 0.0036 23.1 6.0 46 38-84 11-62 (84)
258 COG5193 LHP1 La protein, small 32.5 19 0.00042 36.6 0.8 62 26-87 172-244 (438)
259 KOG2891 Surface glycoprotein [ 32.1 40 0.00086 32.5 2.8 35 27-61 148-194 (445)
260 KOG1295 Nonsense-mediated deca 31.4 43 0.00093 33.9 3.0 68 27-94 6-77 (376)
261 PF07292 NID: Nmi/IFP 35 domai 30.8 25 0.00055 28.0 1.1 26 25-50 49-74 (88)
262 KOG4365 Uncharacterized conser 30.2 12 0.00026 38.3 -1.1 79 29-108 4-83 (572)
263 KOG4483 Uncharacterized conser 28.0 1E+02 0.0022 31.5 4.9 53 133-191 393-446 (528)
264 PF09707 Cas_Cas2CT1978: CRISP 27.9 1E+02 0.0022 24.5 4.0 50 26-77 23-72 (86)
265 PRK11558 putative ssRNA endonu 26.6 99 0.0022 25.1 3.8 51 26-78 25-75 (97)
266 COG2004 RPS24A Ribosomal prote 25.7 2.9E+02 0.0062 22.9 6.3 46 38-84 30-81 (107)
267 COG5638 Uncharacterized conser 25.4 1.1E+02 0.0025 31.2 4.7 38 26-63 144-186 (622)
268 PF11411 DNA_ligase_IV: DNA li 25.4 50 0.0011 21.6 1.5 17 38-54 19-35 (36)
269 cd04905 ACT_CM-PDT C-terminal 24.8 3.1E+02 0.0067 20.7 6.4 50 42-91 15-68 (80)
270 cd04880 ACT_AAAH-PDT-like ACT 24.2 3E+02 0.0065 20.4 6.3 50 42-91 13-66 (75)
271 KOG4008 rRNA processing protei 24.2 41 0.00089 31.8 1.4 34 26-59 38-71 (261)
272 COG0089 RplW Ribosomal protein 24.0 93 0.002 25.2 3.2 43 27-69 19-63 (94)
273 PRK11901 hypothetical protein; 23.3 1.5E+02 0.0033 29.6 5.1 59 135-195 246-307 (327)
274 PF03439 Spt5-NGN: Early trans 23.2 92 0.002 24.4 3.0 34 54-91 33-66 (84)
275 PTZ00191 60S ribosomal protein 23.1 2.2E+02 0.0048 24.9 5.6 54 133-188 83-138 (145)
276 PRK11230 glycolate oxidase sub 22.5 2.5E+02 0.0054 30.0 7.1 50 42-91 203-256 (499)
277 cd04889 ACT_PDH-BS-like C-term 20.8 2.9E+02 0.0064 19.0 5.9 42 43-86 13-55 (56)
278 CHL00123 rps6 ribosomal protei 20.7 2.6E+02 0.0057 22.5 5.3 60 27-88 7-81 (97)
279 PF01814 Hemerythrin: Hemeryth 20.4 90 0.0019 25.6 2.7 59 396-454 56-126 (133)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.2e-68 Score=568.72 Aligned_cols=405 Identities=49% Similarity=0.771 Sum_probs=291.8
Q ss_pred CcccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHH
Q 012034 1 MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 80 (472)
Q Consensus 1 ~~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e 80 (472)
+.++|++|+|+.++++.+|.. .....+++|||+||+.++|+++|+++|++||.|.++.+++|.+|+++|||||+|++.+
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~-~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e 230 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREA-APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHE 230 (562)
T ss_pred cEecCceEEEecccccccccc-ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 457899999999999888852 2346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCccC----CcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccC
Q 012034 81 DAAKAVEALNGKKFD----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG 156 (472)
Q Consensus 81 ~A~~Av~~lng~~i~----g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G 156 (472)
+|.+|++.|++..+. |+.|+|.++.++.++..++...++....+......+++|||+||++++|+++|+++|+.||
T Consensus 231 ~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G 310 (562)
T TIGR01628 231 DAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECG 310 (562)
T ss_pred HHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcC
Confidence 999999999999999 9999999999999988888777776666666677889999999999999999999999999
Q ss_pred ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 012034 157 TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPR 236 (472)
Q Consensus 157 ~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~pp~ 236 (472)
.|++|+|+.+.+|.++|||||+|.+.++|.+|+..|||+.++|++|+|.++.+++.+...++.++.+..+.... .+.
T Consensus 311 ~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~~--~~~- 387 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMRQ--LPM- 387 (562)
T ss_pred CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhccC--CCC-
Confidence 99999999998999999999999999999999999999999999999999999999999888887763321111 010
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCccCccCCCCCCCCCCCCCCCCCCCCCCC
Q 012034 237 MPMYPPGPSGLGQQFLYGQAPPAIIPPQA-GFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQ 315 (472)
Q Consensus 237 ~~~~pp~~~g~g~~~~~g~~p~~~~pp~~-~~~~~~~~~p~~~p~~~~~p~~~~p~~~~~~~~~~~~~~~g~~p~~~~~~ 315 (472)
..+..+.++++.++++.+.+++++++ +|+..+ +++..++++.+.++ . +..++.+++.
T Consensus 388 ---~~p~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~-----------~~~~~~~~~~~~~p-----~---~~~~~~~~~~ 445 (562)
T TIGR01628 388 ---GSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMS-----------MMPTPMGPGGPLRP-----N---GLAPMNAVRA 445 (562)
T ss_pred ---CCCCCCcccCCCccCCCCcccCCCCCCCCCCCC-----------CCCCCCCCCCCCCC-----C---CCCCCCcCCC
Confidence 00111111122222222211111111 111000 00000000000000 0 0000000000
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccchhhhhcCCHHHHHHHh
Q 012034 316 PLPIMPHQMPPR-GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 394 (472)
Q Consensus 316 ~~p~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~q~~~~ 394 (472)
+.....+...+. .+.++++++.+. .+ .++. +++.+...+.+.+.++++++||+++|++||++|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~p~~~~--~~----------~~~~----~~~~~~~~~~~~~~~~~~~~la~~~p~~q~~~l 509 (562)
T TIGR01628 446 PSRNAQNAAQKPPMQPVMYPPNYQS--LP----------LSQD----LPQPQSTASQGGQNKKLAQVLASATPQMQKQVL 509 (562)
T ss_pred CCcccccccccccCCCcCCCccccC--CC----------CCcc----cccccCCccccccchhHHHHHhhCCHHHHHHHH
Confidence 000000000000 011222222110 00 0000 110010112223456799999999999999999
Q ss_pred hhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHH
Q 012034 395 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 447 (472)
Q Consensus 395 g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~ 447 (472)
||+|||+|++++|++|+||||||||||++|||+||||+|+|++||+||++||+
T Consensus 510 g~~~~~~~~~~~~~~~~~~tgm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 510 GERLFPLVEAIEPALAAKITGMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred HHHhHHHHHhhChhhcCcceEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999994
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=259.42 Aligned_cols=178 Identities=28% Similarity=0.529 Sum_probs=158.9
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
.-.|||+.|..+++.|+||+.|.+||+|.+++|++| .|++|||||||.|-+.++|++||..|||..|.+|.|+-.||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 556999999999999999999999999999999999 6899999999999999999999999999999999999999998
Q ss_pred chhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHH
Q 012034 107 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186 (472)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~ 186 (472)
|..........+++.... ....+|++||+|+...+||++||+.|+.||.|.+|+|+++ +||+||.|++.|+|.
T Consensus 142 Kp~e~n~~~ltfdeV~NQ--ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQ--SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAA 214 (321)
T ss_pred CccccCCCCccHHHHhcc--CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHH
Confidence 874332222233433332 2345789999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 187 RALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 187 ~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
+||..+|+.+|+|..+++.|-+....
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999887644
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.7e-32 Score=272.75 Aligned_cols=169 Identities=31% Similarity=0.553 Sum_probs=154.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++||++|+++|+.||+|.+|+|+.| .+++++|||||+|.++++|++||+.||+..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 456899999999999999999999999999999999999 5899999999999999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCH
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
+..... ....++|||+||+.++|+++|+++|++||.|++++|+++. +++++|||||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 864321 1124589999999999999999999999999999999886 789999999999999
Q ss_pred HHHHHHHHHhCCcEecC--eeEEEEEcccHH
Q 012034 183 EEASRALAEMNGKMIVS--KPLYVAVAQRKE 211 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~g--k~l~V~~a~~k~ 211 (472)
++|.+||+.||+..+.+ ++|.|.+++...
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999876 689999988754
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.98 E-value=3.7e-30 Score=276.75 Aligned_cols=196 Identities=42% Similarity=0.662 Sum_probs=170.7
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~ 81 (472)
.|+|+.|.|....+.. .......++|||+|||.++|+++|+++|++||.|.+|+|..|.+|+++|||||+|++.++
T Consensus 66 ~i~gk~i~i~~s~~~~----~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~ 141 (562)
T TIGR01628 66 RLGGKPIRIMWSQRDP----SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEES 141 (562)
T ss_pred EECCeeEEeecccccc----cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHH
Confidence 3677877775543221 222345778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEE
Q 012034 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161 (472)
Q Consensus 82 A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v 161 (472)
|.+|++.+||..+.++.|+|.+...+.++.. ......++|||+||+.++|+++|+++|+.||.|+++
T Consensus 142 A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~-------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~ 208 (562)
T TIGR01628 142 AKAAIQKVNGMLLNDKEVYVGRFIKKHEREA-------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSA 208 (562)
T ss_pred HHHHHHHhcccEecCceEEEecccccccccc-------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999988766654420 112234689999999999999999999999999999
Q ss_pred EEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec----CeeEEEEEcccHHHHH
Q 012034 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV----SKPLYVAVAQRKEERR 214 (472)
Q Consensus 162 ~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~----gk~l~V~~a~~k~~~~ 214 (472)
.++++.+|.++|||||+|.+.++|.+|++.++|..+. |+.++|.+++.+.++.
T Consensus 209 ~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~ 265 (562)
T TIGR01628 209 AVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAERE 265 (562)
T ss_pred EEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhH
Confidence 9999999999999999999999999999999999999 9999999998887664
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.3e-30 Score=273.58 Aligned_cols=178 Identities=24% Similarity=0.430 Sum_probs=154.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+||++++++++|+++|++||.|.+|.+++| .+|++||||||+|++.++|.+|++.|||..|.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 56789999999999999999999999999999999999 58999999999999999999999999999999999999876
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~ 183 (472)
............ . .......++|||+||+.++++++|+++|+.||.|++++|.++. +|+++|||||+|.+.+
T Consensus 185 ~~~p~a~~~~~~-----~--~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPIIDM-----V--QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccccccc-----c--cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 543221110000 0 0011123589999999999999999999999999999999986 5789999999999999
Q ss_pred HHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 184 EASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 184 ~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+|.+|++.||+..|+|+.|+|.++...
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999999999988754
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=245.60 Aligned_cols=184 Identities=27% Similarity=0.451 Sum_probs=148.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccC-Ccceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~-g~~l~V~~ 103 (472)
..-+.|||+.||.|+.|++|..+|++.|+|.++++|.| -+|.+||||||.|.++++|++||+.||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45688999999999999999999999999999999999 68999999999999999999999999999884 66666654
Q ss_pred cccc----------hhHHHHHHHHHHh------------------------------------hhhh-------------
Q 012034 104 AQKK----------SEREQELKGQFEQ------------------------------------AMKE------------- 124 (472)
Q Consensus 104 a~~~----------~~~~~~~~~~~~~------------------------------------~~~~------------- 124 (472)
+..+ ...+.++...... .+..
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 4221 1111111111100 0000
Q ss_pred ------------hccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh
Q 012034 125 ------------TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192 (472)
Q Consensus 125 ------------~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l 192 (472)
.....+-..|||+||+.++|+|.|+++|++||.|+.|+.++| ||||+|.+.++|.+|++.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHh
Confidence 000001124999999999999999999999999999999877 9999999999999999999
Q ss_pred CCcEecCeeEEEEEcccHHHHHHH
Q 012034 193 NGKMIVSKPLYVAVAQRKEERRAR 216 (472)
Q Consensus 193 ~g~~i~gk~l~V~~a~~k~~~~~~ 216 (472)
||++|+|..|.|.+|+...+++..
T Consensus 314 ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 314 NGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred cCceecCceEEEEecCChhhhccc
Confidence 999999999999999988766544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=9.2e-30 Score=258.23 Aligned_cols=204 Identities=27% Similarity=0.433 Sum_probs=161.1
Q ss_pred ccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHH
Q 012034 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADD 81 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~ 81 (472)
|.|++|.|....... .....++|||+|||.++++++|+++|++||.|..+.++.+. ++.++|||||+|++.++
T Consensus 70 l~g~~i~v~~a~~~~------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 70 LQNKTIKVSYARPSS------DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred ECCeeEEEEeecccc------cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 556666665432221 12356789999999999999999999999999999999884 78899999999999999
Q ss_pred HHHHHHHHCCCccCC--cceeeeccccchhHHH-HHHHH---H-----H-------------------------------
Q 012034 82 AAKAVEALNGKKFDD--REWYVGKAQKKSEREQ-ELKGQ---F-----E------------------------------- 119 (472)
Q Consensus 82 A~~Av~~lng~~i~g--~~l~V~~a~~~~~~~~-~~~~~---~-----~------------------------------- 119 (472)
|.+|++.|||..+.| ..|.|.++........ ..... . .
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFT 223 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhh
Confidence 999999999999887 4678887754331100 00000 0 0
Q ss_pred h-----------------hh-----------------hhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEee
Q 012034 120 Q-----------------AM-----------------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 165 (472)
Q Consensus 120 ~-----------------~~-----------------~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~ 165 (472)
. .. ........+.+|||+||++++++++|+++|++||.|++++|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~ 303 (352)
T TIGR01661 224 AVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIR 303 (352)
T ss_pred hhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeE
Confidence 0 00 0000012234699999999999999999999999999999999
Q ss_pred CC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 166 DP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 166 ~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
|. +|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+..+..
T Consensus 304 d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 304 DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 97 899999999999999999999999999999999999999987753
No 8
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-30 Score=260.96 Aligned_cols=224 Identities=63% Similarity=0.954 Sum_probs=211.0
Q ss_pred CcccCeeEEEcCcccchhhhhhhc--cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCC
Q 012034 1 MLINDKQVFVGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78 (472)
Q Consensus 1 ~~~~~k~v~v~~~~~~~~r~~~~~--~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~ 78 (472)
|+++|++||||.|.++.+|..... ...++++||+|++.+.+++.|+++|+.||.|.++.++.+..|+++||+||+|++
T Consensus 138 ~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFEN 217 (369)
T ss_pred cccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecC
Confidence 578999999999999999975544 377999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCce
Q 012034 79 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 158 (472)
Q Consensus 79 ~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I 158 (472)
+++|..|++.|++..+.+..|+|.+++++.++...++..++.............+|||+|++..++++.|+++|+.||.|
T Consensus 218 ~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI 297 (369)
T KOG0123|consen 218 PEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEI 297 (369)
T ss_pred hhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccce
Confidence 99999999999999999999999999999999999998888888888778889999999999999999999999999999
Q ss_pred EEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHHHHHHHHHhhhcC
Q 012034 159 TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 224 (472)
Q Consensus 159 ~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~~~~~~~~~~~ 224 (472)
++++|+.+..|.++||+||+|.+.++|.+|+..+|+..+.+++++|.+++++..++.+++..+.+.
T Consensus 298 ~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~~ 363 (369)
T KOG0123|consen 298 TSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGAR 363 (369)
T ss_pred eeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhccee
Confidence 999999999999999999999999999999999999999999999999999988888877766554
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.2e-29 Score=255.52 Aligned_cols=167 Identities=34% Similarity=0.630 Sum_probs=151.5
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
+.++|||+|||.++||++|+++|++||+|.+|+|++| .+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999998 479999999999999999999999999999999999999986
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~ 184 (472)
.+.. ...+++|||+||+..+++++|+++|+.||.|..++++.+. ++.++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 82 PSSD------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred cccc------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 5321 1234589999999999999999999999999999998875 67899999999999999
Q ss_pred HHHHHHHhCCcEecC--eeEEEEEcccHH
Q 012034 185 ASRALAEMNGKMIVS--KPLYVAVAQRKE 211 (472)
Q Consensus 185 A~~Ai~~l~g~~i~g--k~l~V~~a~~k~ 211 (472)
|.+|++.|||..+.| .+|.|.++....
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 999999999999876 678888886553
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.3e-29 Score=244.34 Aligned_cols=172 Identities=30% Similarity=0.576 Sum_probs=150.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCc-cCC--cceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKK-FDD--REWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~-i~g--~~l~V 101 (472)
...-++||+.||+.|+|+||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+.+||+.. |.| ..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456679999999999999999999999999999999994 89999999999999999999999998765 555 46777
Q ss_pred eccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCC
Q 012034 102 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181 (472)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s 181 (472)
++|....++- ....+|||+-|+..+||.+++++|++||.|++|.|++|.++.|||||||+|++
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 7776543321 11236999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcE-ec--CeeEEEEEcccHHHHH
Q 012034 182 PEEASRALAEMNGKM-IV--SKPLYVAVAQRKEERR 214 (472)
Q Consensus 182 ~~~A~~Ai~~l~g~~-i~--gk~l~V~~a~~k~~~~ 214 (472)
.+.|..||+.|||.. +. ..+|.|+||..+.++.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999999999999965 43 5699999998875554
No 11
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=1e-29 Score=186.35 Aligned_cols=64 Identities=61% Similarity=0.944 Sum_probs=62.1
Q ss_pred CHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 012034 386 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449 (472)
Q Consensus 386 ~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~ 449 (472)
+|++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999999999875
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.5e-27 Score=250.50 Aligned_cols=179 Identities=31% Similarity=0.500 Sum_probs=153.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+...++|||+|||.++|+++|+++|++||.|.+|.++.| .+|+++|||||+|.+.++|.+||. |+|..+.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999 579999999999999999999996 899999999999987
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCH
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
+............ .........++|||+||+..+|+++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.
T Consensus 165 ~~~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 165 SQAEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred cchhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 6543322211000 000011125689999999999999999999999999999999886 468999999999999
Q ss_pred HHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 183 EEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
++|.+|+..|||..|.|+.|.|.|+...
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999999998743
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=4.8e-27 Score=246.48 Aligned_cols=180 Identities=26% Similarity=0.409 Sum_probs=143.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC-Ccceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~-g~~l~V~~a 104 (472)
...++|||+|||+++||++|+++|++||.|.+++|+.|.+|++||||||+|.+.|+|++||+.||+..|. ++.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999998885 565555443
Q ss_pred ccc----------hhHHHHHHHHHH----------------------------------------hh---h---------
Q 012034 105 QKK----------SEREQELKGQFE----------------------------------------QA---M--------- 122 (472)
Q Consensus 105 ~~~----------~~~~~~~~~~~~----------------------------------------~~---~--------- 122 (472)
... ...+.++...+. .. .
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 210 000000000000 00 0
Q ss_pred ------h---hhccccccceeeeecCCCCccHHHHHHHHhcc--CceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHH
Q 012034 123 ------K---ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191 (472)
Q Consensus 123 ------~---~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~--G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~ 191 (472)
. +........+|||+||++++|+++|+++|+.| |.|++|++++ +||||+|.+.++|.+|++.
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHH
Confidence 0 00001123579999999999999999999999 9999998764 4999999999999999999
Q ss_pred hCCcEecCeeEEEEEcccHHH
Q 012034 192 MNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 192 l~g~~i~gk~l~V~~a~~k~~ 212 (472)
||+..|+|+.|.|.|+..+..
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred hCCCEECCEEEEEEEccCCCc
Confidence 999999999999999987543
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.2e-27 Score=215.67 Aligned_cols=169 Identities=31% Similarity=0.607 Sum_probs=155.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+...+||.|.=||.++|+|||+.+|+..|+|++|++++|+ +|.|.|||||+|.+++||++||..|||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 5678999999999999999999999999999999999995 899999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCH
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
|.+.++ ...+.+|||.+||...|..+|+.+|+.||.|..-+|..|. +|.+||.+||.|+..
T Consensus 118 ARPSs~------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 118 ARPSSD------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred ccCChh------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 987654 3456699999999999999999999999999988888875 899999999999999
Q ss_pred HHHHHHHHHhCCcEec--CeeEEEEEcccHH
Q 012034 183 EEASRALAEMNGKMIV--SKPLYVAVAQRKE 211 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~--gk~l~V~~a~~k~ 211 (472)
.+|+.||..|||..-. ..+|.|+|+....
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999999999998764 4689999998763
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=6.9e-26 Score=238.42 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=154.5
Q ss_pred cccCeeEEEcCcccch-hhhhh-----hccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEE
Q 012034 2 LINDKQVFVGHFLRKQ-ERETV-----AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 75 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~-~r~~~-----~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~ 75 (472)
.|+|+.|+|....++. .|... .......+|||+||++++|+++|+++|++||.|.+|.|+++. .+|+|||+
T Consensus 64 ~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVe 140 (481)
T TIGR01649 64 YIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVE 140 (481)
T ss_pred eEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEE
Confidence 5789999998775443 22110 112345689999999999999999999999999999998863 25799999
Q ss_pred eCCHHHHHHHHHHHCCCccCC--cceeeeccccchh--------------------HHHHHHH----HHHhh--------
Q 012034 76 FENADDAAKAVEALNGKKFDD--REWYVGKAQKKSE--------------------REQELKG----QFEQA-------- 121 (472)
Q Consensus 76 F~~~e~A~~Av~~lng~~i~g--~~l~V~~a~~~~~--------------------~~~~~~~----~~~~~-------- 121 (472)
|++.++|.+|++.|||..|.+ +.|.|.|+..... ++..+.. .....
T Consensus 141 f~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (481)
T TIGR01649 141 FESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSY 220 (481)
T ss_pred ECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccC
Confidence 999999999999999999965 4677777653211 0000000 00000
Q ss_pred ----------------------------hh-------h----h------ccccccceeeeecCCC-CccHHHHHHHHhcc
Q 012034 122 ----------------------------MK-------E----T------VDKFQGLNLYIKNLGD-SIDDEKLKELFSEF 155 (472)
Q Consensus 122 ----------------------------~~-------~----~------~~~~~~~~l~V~nL~~-~~t~e~L~~~F~~~ 155 (472)
.. . . .....+++|||+||++ .+|+++|+++|+.|
T Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y 300 (481)
T TIGR01649 221 GHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY 300 (481)
T ss_pred CCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 00 0 0 0012457899999997 69999999999999
Q ss_pred CceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 156 GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 156 G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
|.|.+|+|+++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.+++..
T Consensus 301 G~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 301 GNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 99999999986 4799999999999999999999999999999999987554
No 16
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.94 E-value=2.3e-27 Score=180.65 Aligned_cols=71 Identities=61% Similarity=0.915 Sum_probs=69.3
Q ss_pred ccchhhhhcCCHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHH
Q 012034 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 446 (472)
Q Consensus 376 ~~~~~~la~~~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l 446 (472)
+.+++.|+++++++||++|||+|||+|..++|++|+||||||||||++||++||+|++.|++||+||++||
T Consensus 2 ~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 2 PLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp STSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999997
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.1e-25 Score=236.77 Aligned_cols=178 Identities=20% Similarity=0.307 Sum_probs=144.3
Q ss_pred CcceEEeCCCCC-CCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+||++ ++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 567999999997 6999999999999999999999987 36899999999999999999999999999999999875
Q ss_pred cchhHHHH-------HH--HHHHhhhhhhc----------cccccceeeeecCCCCccHHHHHHHHhccCc--eEEEEEe
Q 012034 106 KKSEREQE-------LK--GQFEQAMKETV----------DKFQGLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVM 164 (472)
Q Consensus 106 ~~~~~~~~-------~~--~~~~~~~~~~~----------~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~--I~~v~i~ 164 (472)
........ .. ..+......+. ....+.+|||+|||+++|+++|+++|+.||. |+.++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~ 429 (481)
T TIGR01649 350 QQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFF 429 (481)
T ss_pred cccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 54221100 00 00000000000 0123568999999999999999999999998 8889987
Q ss_pred eCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee------EEEEEccc
Q 012034 165 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP------LYVAVAQR 209 (472)
Q Consensus 165 ~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~------l~V~~a~~ 209 (472)
.+.++ ++++|||+|.+.++|.+|+..||+..|.++. |+|++++.
T Consensus 430 ~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 430 PKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred cCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 65444 5899999999999999999999999999885 88888865
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=4.8e-25 Score=234.56 Aligned_cols=186 Identities=19% Similarity=0.293 Sum_probs=147.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|+.||.|..+.|+++ .+|+++|||||+|.+.++|..|++.|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999998 58999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHH--------HHHh--hhhhhccccccceeeeecCCCC--c--------cHHHHHHHHhccCceEEEEEe
Q 012034 105 QKKSEREQELKG--------QFEQ--AMKETVDKFQGLNLYIKNLGDS--I--------DDEKLKELFSEFGTITSCKVM 164 (472)
Q Consensus 105 ~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~l~V~nL~~~--~--------t~e~L~~~F~~~G~I~~v~i~ 164 (472)
............ .... ............+|+|.|+... + ..++|+++|++||.|++|+|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 543211100000 0000 0000011223457899998531 1 236899999999999999998
Q ss_pred eCC----CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 165 RDP----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 165 ~~~----~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
++. .+.+.|++||+|.+.++|.+|+..|||..|+|+.|.|.|.....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHH
Confidence 752 34568999999999999999999999999999999999976543
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=222.97 Aligned_cols=183 Identities=31% Similarity=0.464 Sum_probs=157.8
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
.||||++||.+++.++|.++|+.+|.|..++++.+. ++.+||||||+|.-.||+++|+...+++.+.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999999999984 6789999999999999999999999999999999999999876
Q ss_pred hhHHHHHHHHHHhhhhh------hcc--ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEc
Q 012034 108 SEREQELKGQFEQAMKE------TVD--KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 179 (472)
Q Consensus 108 ~~~~~~~~~~~~~~~~~------~~~--~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f 179 (472)
...+.......+...+. ... ....+.|.|.||||.+.+.+|..+|+.||.|.+|.|++..+|+-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 65442221111111110 111 1225689999999999999999999999999999999988888889999999
Q ss_pred CCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 180 STPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 180 ~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
.+..+|.+|++.+|+..|+|++|-|.||-.+.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999997763
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.6e-25 Score=199.83 Aligned_cols=202 Identities=29% Similarity=0.446 Sum_probs=162.2
Q ss_pred ccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHH
Q 012034 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 81 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~ 81 (472)
|..|.|.|....+..+ ..+..||||.+||+.+|..||+.+|++||.|..-+|..| .+|.+||.|||.|...++
T Consensus 108 LQ~KTIKVSyARPSs~------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 108 LQNKTIKVSYARPSSD------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred eccceEEEEeccCChh------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 4557777776544332 356788999999999999999999999999877778777 689999999999999999
Q ss_pred HHHHHHHHCCCccCCc--ceeeeccccchhHH--HHHHHHH--------------------H--------hhh-----hh
Q 012034 82 AAKAVEALNGKKFDDR--EWYVGKAQKKSERE--QELKGQF--------------------E--------QAM-----KE 124 (472)
Q Consensus 82 A~~Av~~lng~~i~g~--~l~V~~a~~~~~~~--~~~~~~~--------------------~--------~~~-----~~ 124 (472)
|+.||+.|||..-.|+ .|.|+++...+... ..+...+ + ..+ .+
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d 261 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTID 261 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccc
Confidence 9999999999987665 78998886543221 0000000 0 000 00
Q ss_pred ----------hccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhC
Q 012034 125 ----------TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 193 (472)
Q Consensus 125 ----------~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~ 193 (472)
......+++|||-||..+.+|.-|+++|..||.|..|+|++|. ++++|||+||.+.+.++|..||..||
T Consensus 262 ~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN 341 (360)
T KOG0145|consen 262 GMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 341 (360)
T ss_pred ccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc
Confidence 0011235789999999999999999999999999999999996 48999999999999999999999999
Q ss_pred CcEecCeeEEEEEcccH
Q 012034 194 GKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 194 g~~i~gk~l~V~~a~~k 210 (472)
|..+++|.|.|+|...+
T Consensus 342 Gy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 342 GYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CccccceEEEEEEecCC
Confidence 99999999999987654
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2.1e-25 Score=194.41 Aligned_cols=171 Identities=32% Similarity=0.554 Sum_probs=152.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....+|||+||+..+|++-|.++|-+.|.|.++.+.+|. +...+|||||+|.++|+|.-|++-||...+-|+.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 346789999999999999999999999999999999994 6778999999999999999999999999999999999988
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEE-EEEeeCC-CCCcccEEEEEcCCH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~-v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
....+ ....+.+|||+||+.++++..|.+.|+.||.+.+ -+|++++ +|.++||+||.|.+.
T Consensus 87 s~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 87 SAHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ccccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 72211 1112358999999999999999999999998776 4788886 588999999999999
Q ss_pred HHHHHHHHHhCCcEecCeeEEEEEcccHHHH
Q 012034 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEER 213 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~ 213 (472)
+.+.+|+..+||+.++.+++.|+++.++..+
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999999999999999999999877543
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.1e-25 Score=219.75 Aligned_cols=273 Identities=36% Similarity=0.500 Sum_probs=222.5
Q ss_pred EEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccchhH
Q 012034 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 110 (472)
Q Consensus 31 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~ 110 (472)
|||+||++++|..+|.++|+.||+|.||++..|.+| ++|| ||+|+++++|++|++.+||..+.+++|+|..+..+.++
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999999999999999999999999999999999 9999 99999999999999999999999999999999988877
Q ss_pred HHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHH
Q 012034 111 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 190 (472)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~ 190 (472)
...... . ...-+++||+|++.+++++.|.+.|+.||.|.++.++.+..|.+++|+||.|.+.++|..|+.
T Consensus 157 ~~~~~~-~---------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 157 EAPLGE-Y---------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred cccccc-h---------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 654432 1 112347999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEecCeeEEEEEcccHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012034 191 EMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPPAIIPPQAGFGYQ 270 (472)
Q Consensus 191 ~l~g~~i~gk~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~pp~~~g~g~~~~~g~~p~~~~pp~~~~~~~ 270 (472)
.|++..+.++.+.|.-++.+.++..-+...+.+........ ..
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~--------------------~~----------------- 269 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVS--------------------LQ----------------- 269 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcccc--------------------cc-----------------
Confidence 99999999999999999997776665554433321100000 00
Q ss_pred CCCCCCCCCCCCCCCCCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012034 271 QQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGS 350 (472)
Q Consensus 271 ~~~~p~~~p~~~~~p~~~~p~~~~~~~~~~~~~~~g~~p~~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 350 (472)
..+
T Consensus 270 -------------~~n---------------------------------------------------------------- 272 (369)
T KOG0123|consen 270 -------------GAN---------------------------------------------------------------- 272 (369)
T ss_pred -------------ccc----------------------------------------------------------------
Confidence 000
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCccccchhhhhcCCHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhC
Q 012034 351 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLE 430 (472)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~ 430 (472)
.. +.-+...+......++.+.+|+....+|...+...+...+.+..+-++++...|.+
T Consensus 273 -----------l~-----------vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~ 330 (369)
T KOG0123|consen 273 -----------LY-----------VKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTE 330 (369)
T ss_pred -----------cc-----------cccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHh
Confidence 00 00022234444557788888999988888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 012034 431 SPEALKAKVAEAMEVLRSVAQ 451 (472)
Q Consensus 431 ~~~~l~~~v~~a~~~l~~~~~ 451 (472)
-...+.......+++.+.++.
T Consensus 331 ~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 331 MNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred hChhhhcCCchhhhHHhhhcc
Confidence 888888888888888876553
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1e-24 Score=231.97 Aligned_cols=178 Identities=22% Similarity=0.373 Sum_probs=140.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcC------------CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCC
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEY------------GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 92 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~f------------G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~ 92 (472)
....++|||+|||.++|+++|+++|+.| +.|..+.+ ++++|||||+|.+.|+|..|| +|+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 4567899999999999999999999985 23344433 345899999999999999999 59999
Q ss_pred ccCCcceeeeccccchhHHHH---HH--------HHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEE
Q 012034 93 KFDDREWYVGKAQKKSEREQE---LK--------GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161 (472)
Q Consensus 93 ~i~g~~l~V~~a~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v 161 (472)
.|.|+.|.|.+.......... .. .................+|||+||+..+|+++|+++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 999999999865433210000 00 0000000001112234689999999999999999999999999999
Q ss_pred EEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 162 KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 162 ~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.|+.+. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 998885 78899999999999999999999999999999999999875
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=8.2e-24 Score=222.16 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=155.6
Q ss_pred cccCeeEEEcCcccchhhhhhhc------cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEE
Q 012034 2 LINDKQVFVGHFLRKQERETVAI------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFV 74 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~------~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV 74 (472)
.|.|+.|.|........+..... ....++|||+|||.++|+++|+++|+.||.|.+|.++.|. +|+++|||||
T Consensus 154 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV 233 (457)
T TIGR01622 154 MLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFI 233 (457)
T ss_pred EECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEE
Confidence 34566666655433332221111 1236899999999999999999999999999999999985 6799999999
Q ss_pred EeCCHHHHHHHHHHHCCCccCCcceeeeccccchhHHHH------------------------HHHHHHhhh--------
Q 012034 75 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE------------------------LKGQFEQAM-------- 122 (472)
Q Consensus 75 ~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~------------------------~~~~~~~~~-------- 122 (472)
+|.+.++|.+|++.|||..|.|+.|.|.++......... +........
T Consensus 234 ~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (457)
T TIGR01622 234 QFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP 313 (457)
T ss_pred EECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC
Confidence 999999999999999999999999999997532211100 000000000
Q ss_pred ------------------h------------------hhc----cccccceeeeecCCCCcc----------HHHHHHHH
Q 012034 123 ------------------K------------------ETV----DKFQGLNLYIKNLGDSID----------DEKLKELF 152 (472)
Q Consensus 123 ------------------~------------------~~~----~~~~~~~l~V~nL~~~~t----------~e~L~~~F 152 (472)
. ... ......+|+|.|+-...+ .+||++.|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~ 393 (457)
T TIGR01622 314 GTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEEC 393 (457)
T ss_pred CccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHH
Confidence 0 000 113346788999954433 36899999
Q ss_pred hccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 153 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 153 ~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
++||.|++|.|... .+.|++||+|.+.++|.+|++.|||+.|+|+.|.|.+.....-
T Consensus 394 ~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 394 SKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVY 450 (457)
T ss_pred HhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHH
Confidence 99999999999743 4679999999999999999999999999999999999876653
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.8e-25 Score=214.35 Aligned_cols=209 Identities=27% Similarity=0.446 Sum_probs=167.7
Q ss_pred ccCeeEEEcCcccchhhhhhhcc---CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCH
Q 012034 3 INDKQVFVGHFLRKQERETVAIK---TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~---~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~ 79 (472)
|++++++-|-+..-+-|-.+.+. ...++|||+-|++.+||.+++++|++||.|++|.|++|..+.|||||||+|++.
T Consensus 96 lhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 96 LHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred hhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 45667776666555544332221 347889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCc-cCCc--ceeeeccccchhHHHHHHHHH--------------------------------------
Q 012034 80 DDAAKAVEALNGKK-FDDR--EWYVGKAQKKSEREQELKGQF-------------------------------------- 118 (472)
Q Consensus 80 e~A~~Av~~lng~~-i~g~--~l~V~~a~~~~~~~~~~~~~~-------------------------------------- 118 (472)
|.|..||++||+.. ++|+ .|.|+||..+.++..+.....
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sq 255 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQ 255 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccC
Confidence 99999999999876 5554 799999987665441100000
Q ss_pred --------------------------------------------------------------------------------
Q 012034 119 -------------------------------------------------------------------------------- 118 (472)
Q Consensus 119 -------------------------------------------------------------------------------- 118 (472)
T Consensus 256 n~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~ 335 (510)
T KOG0144|consen 256 NVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGAR 335 (510)
T ss_pred CCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHh
Confidence
Q ss_pred ----------------------------------------H------------------------------------hhh
Q 012034 119 ----------------------------------------E------------------------------------QAM 122 (472)
Q Consensus 119 ----------------------------------------~------------------------------------~~~ 122 (472)
+ ...
T Consensus 336 q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~ 415 (510)
T KOG0144|consen 336 QTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVG 415 (510)
T ss_pred hcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhccc
Confidence 0 000
Q ss_pred hhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee
Q 012034 123 KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201 (472)
Q Consensus 123 ~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~ 201 (472)
....+...+.+|||.+||.+.-+.+|-..|..||.|.+.+++-|+ +|.|+.|+||.|++..+|..||..|||+.|+.|+
T Consensus 416 ~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Kr 495 (510)
T KOG0144|consen 416 NGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKR 495 (510)
T ss_pred CccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcccc
Confidence 000111234569999999999999999999999999999998886 8999999999999999999999999999999999
Q ss_pred EEEEEcccHH
Q 012034 202 LYVAVAQRKE 211 (472)
Q Consensus 202 l~V~~a~~k~ 211 (472)
++|.+.+.+.
T Consensus 496 lkVQlk~~~~ 505 (510)
T KOG0144|consen 496 LKVQLKRDRN 505 (510)
T ss_pred ceEEeeeccC
Confidence 9999877653
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.5e-25 Score=202.35 Aligned_cols=187 Identities=30% Similarity=0.476 Sum_probs=159.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc-C--Ccceeee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-D--DREWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i-~--g~~l~V~ 102 (472)
...++|||+-|.+.-+|||++.+|..||.|++|.+.+..+|.+||||||.|.++-+|..||..|||... . ...|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 357889999999999999999999999999999999999999999999999999999999999999774 3 3579999
Q ss_pred ccccchhHHHHHH-------------------------------------------------------------------
Q 012034 103 KAQKKSEREQELK------------------------------------------------------------------- 115 (472)
Q Consensus 103 ~a~~~~~~~~~~~------------------------------------------------------------------- 115 (472)
++....||....-
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 9987777651000
Q ss_pred --------------------------------------------------------------------HHHH--------
Q 012034 116 --------------------------------------------------------------------GQFE-------- 119 (472)
Q Consensus 116 --------------------------------------------------------------------~~~~-------- 119 (472)
..+.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000
Q ss_pred -----------------hhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCC
Q 012034 120 -----------------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST 181 (472)
Q Consensus 120 -----------------~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s 181 (472)
.......+...+|||||-.||.+..|.+|...|-.||.|.+.+|+.|+ ++.||+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 000011223367999999999999999999999999999999999997 78999999999999
Q ss_pred HHHHHHHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 182 ~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
+.+|+.||..|||..|+-|+|+|.+.+.|+.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999888764
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=8e-25 Score=203.23 Aligned_cols=149 Identities=23% Similarity=0.521 Sum_probs=139.6
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ ||||..+++..|+.||..||+..|.|..|.|+.++.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 36999999999999999999999999999999987 99999999999999999999999999999999887663
Q ss_pred hHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHH
Q 012034 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 188 (472)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~A 188 (472)
+ ..++|+|+||.+.++.++||..|++||.|.+|+|.+| |+||.|+..++|..|
T Consensus 76 k--------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 76 K--------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEA 128 (346)
T ss_pred C--------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHH
Confidence 2 3458999999999999999999999999999999976 999999999999999
Q ss_pred HHHhCCcEecCeeEEEEEcccHH
Q 012034 189 LAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 189 i~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
+..|++.+|.|++++|.++.++-
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Hhcccccccccceeeeeeecccc
Confidence 99999999999999999987653
No 28
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=208.92 Aligned_cols=186 Identities=33% Similarity=0.500 Sum_probs=153.0
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
..+|.|+|||+.|.+.+|+.+|+.||.|.+|.|.+..+|+-.|||||.|.+..+|..|++.+|+..|+|+.|-|.||-.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 67899999999999999999999999999999998888887799999999999999999999999999999999999655
Q ss_pred hhHHH----------------HHHH-H------------------HH--h------------------------h-hhh-
Q 012034 108 SEREQ----------------ELKG-Q------------------FE--Q------------------------A-MKE- 124 (472)
Q Consensus 108 ~~~~~----------------~~~~-~------------------~~--~------------------------~-~~~- 124 (472)
...+. +... . .+ . + ..+
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 33221 0000 0 00 0 0 000
Q ss_pred ---------hccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHh--
Q 012034 125 ---------TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM-- 192 (472)
Q Consensus 125 ---------~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l-- 192 (472)
..+...+.+|||.||++++|+++|.+.|+.||.|.++.|+.++ ++.|+|.|||.|.+..+|.+||+.-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0001123579999999999999999999999999999998886 7899999999999999999999876
Q ss_pred ---CC-cEecCeeEEEEEcccHHHH
Q 012034 193 ---NG-KMIVSKPLYVAVAQRKEER 213 (472)
Q Consensus 193 ---~g-~~i~gk~l~V~~a~~k~~~ 213 (472)
.| ..++|+.|.|..+-.+++-
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHH
Confidence 23 6789999999999777554
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=198.86 Aligned_cols=174 Identities=26% Similarity=0.470 Sum_probs=150.6
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
-.++|||+.|.+++.|+.|+..|..||.|+||.+.+| .+++.||||||+|+-+|.|..|++.|||..++||.|+|.+.+
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4688999999999999999999999999999999999 589999999999999999999999999999999999999765
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCC-CcccEEEEEcCCHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEE 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g-~s~g~afV~f~s~~~ 184 (472)
.-...+.......++.+ + =..|||..+..+++++||+.+|+.||.|.+|.+-+++++ ..|||+|++|.+..+
T Consensus 192 NmpQAQpiID~vqeeAk-----~--fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAK-----K--FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred CCcccchHHHHHHHHHH-----h--hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 44332222221111111 1 126999999999999999999999999999999999754 579999999999999
Q ss_pred HHHHHHHhCCcEecCeeEEEEEc
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
-..||..||-+.++|..|+|..+
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hHHHhhhcchhhcccceEecccc
Confidence 99999999999999999998743
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=4.9e-21 Score=201.58 Aligned_cols=105 Identities=20% Similarity=0.420 Sum_probs=86.9
Q ss_pred cccCeeEEEcCcccchhhhh-----hhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEE
Q 012034 2 LINDKQVFVGHFLRKQERET-----VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 75 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~-----~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~ 75 (472)
.|+|++|.|++......... ......+++|||+||+.++++++|+++|+.||.|.++.|.+|. +|++||||||+
T Consensus 173 ~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVe 252 (612)
T TIGR01645 173 MLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 252 (612)
T ss_pred EEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEE
Confidence 46677888875433221110 0112467899999999999999999999999999999999994 68899999999
Q ss_pred eCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 76 FENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 76 F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
|++.++|.+||+.||+..|+|+.|+|.++..
T Consensus 253 Fe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 253 YNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999999988753
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=5e-22 Score=204.36 Aligned_cols=178 Identities=28% Similarity=0.473 Sum_probs=152.9
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCC----ceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK----SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~----skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
..++|||+||++++|.++|...|++.|.|.++.|....++. |.|||||+|.+.++|++|++.|+|+.|+|+.|+|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34559999999999999999999999999999988775543 56999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCC
Q 012034 103 KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFST 181 (472)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s 181 (472)
.+..+.... ..........+++|+|+|||...+..+++++|..||.|.+|+|... ..+.++|||||.|-+
T Consensus 594 ~S~~k~~~~---------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 594 ISENKPAST---------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred eccCccccc---------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 987222111 0122222334679999999999999999999999999999999887 355679999999999
Q ss_pred HHHHHHHHHHhCCcEecCeeEEEEEcccHHHH
Q 012034 182 PEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213 (472)
Q Consensus 182 ~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~ 213 (472)
..+|.+|++.|.+..+.|+.|.+.|+......
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKSDNTM 696 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhccchHH
Confidence 99999999999999999999999999887553
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=2.1e-21 Score=188.93 Aligned_cols=174 Identities=25% Similarity=0.460 Sum_probs=151.9
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||++|+|++|+|.|++.|+.||+|.++.+++| .+++++||+||+|.+.++..+++.. ..+.|+|+.|.+.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 5788999999999999999999999999999999999 4799999999999999999999864 5778999999999998
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~ 184 (472)
++.+....... .....+||++|+.+++++++++.|++||.|..+.++.|. ...++||+||.|.+.++
T Consensus 84 ~r~~~~~~~~~------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGRH------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Ccccccccccc------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 76654322111 133479999999999999999999999999999988885 67899999999999998
Q ss_pred HHHHHHHhCCcEecCeeEEEEEcccHHHHH
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERR 214 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~ 214 (472)
+.+++ ..+.+.|+++.+.|..|.+++...
T Consensus 152 Vdkv~-~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 152 VDKVT-LQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceec-ccceeeecCceeeEeeccchhhcc
Confidence 88877 688889999999999999987654
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=1.6e-20 Score=188.64 Aligned_cols=181 Identities=24% Similarity=0.427 Sum_probs=153.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
++..++||+-.|....+..+|.++|+.+|.|..|.++.| .++++||.|||+|.|.++.-.|| .|.|..+.|..|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 577899999999999999999999999999999999999 47899999999999999999999 6999999999999987
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCH
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
......+.......+... ... ..-..|||+||..++++++|+.+|+.||.|+.|.+.+|. +|.++||+||+|.+.
T Consensus 255 sEaeknr~a~~s~a~~~k--~~~--~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGK--GFT--GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred cHHHHHHHHhcccccccc--ccc--cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 754433322111111100 000 011129999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 183 EEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
++|.+|+..|||.+|.|+.|+|.....+
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeee
Confidence 9999999999999999999999876655
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.3e-19 Score=167.13 Aligned_cols=140 Identities=32% Similarity=0.552 Sum_probs=118.9
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..-+||||+||+.++||+-|..+|+..|.|++++|+.| .|.|.|+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 45789999999999999999999999999999999887 33444443
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~ 184 (472)
..... ......+...+||+.|..+++-|+||+.|.+||+|.+++|++|. +++||||+||.|-+.++
T Consensus 50 ~p~nQ-------------sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~d 116 (321)
T KOG0148|consen 50 APGNQ-------------SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKED 116 (321)
T ss_pred CcccC-------------CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHH
Confidence 32110 00011123469999999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
|++||..|||..|++|.|+..|+.+|..
T Consensus 117 AEnAI~~MnGqWlG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 117 AENAIQQMNGQWLGRRTIRTNWATRKPS 144 (321)
T ss_pred HHHHHHHhCCeeeccceeeccccccCcc
Confidence 9999999999999999999999998863
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=3.3e-18 Score=172.12 Aligned_cols=204 Identities=23% Similarity=0.355 Sum_probs=149.2
Q ss_pred ccCeeEEEcCcccchhhhhhhc--------cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEE
Q 012034 3 INDKQVFVGHFLRKQERETVAI--------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGF 73 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~--------~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aF 73 (472)
+.|..|+|..-..-+.|..... ..++..|||+||..++|+++|+.+|+.||.|..|.+..|. +|.++||||
T Consensus 245 llg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGf 324 (549)
T KOG0147|consen 245 LLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGF 324 (549)
T ss_pred ccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcce
Confidence 4456677766655555533221 2345559999999999999999999999999999999995 999999999
Q ss_pred EEeCCHHHHHHHHHHHCCCccCCcceeeeccccchhHH------------------------HHHHHHHHhhh-------
Q 012034 74 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE------------------------QELKGQFEQAM------- 122 (472)
Q Consensus 74 V~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~------------------------~~~~~~~~~~~------- 122 (472)
|+|.+.++|++|++.|||.+|.|+.|.|..-..+.+.. ..+..+.....
T Consensus 325 i~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~ 404 (549)
T KOG0147|consen 325 ITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPST 404 (549)
T ss_pred EEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999885432221110 00000000000
Q ss_pred -----------------------hhhccc-------cccceeeeecCCCCcc----------HHHHHHHHhccCceEEEE
Q 012034 123 -----------------------KETVDK-------FQGLNLYIKNLGDSID----------DEKLKELFSEFGTITSCK 162 (472)
Q Consensus 123 -----------------------~~~~~~-------~~~~~l~V~nL~~~~t----------~e~L~~~F~~~G~I~~v~ 162 (472)
...... ...-|+.++|+=+.-| .||+.+.+++||.|..|.
T Consensus 405 ~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~ 484 (549)
T KOG0147|consen 405 AISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIF 484 (549)
T ss_pred hhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEE
Confidence 000011 2233556666633222 278889999999999888
Q ss_pred EeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 163 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 163 i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
|-++ |-|+.||.|.+.++|..|+.+|||.+|.|+.|.++|-...
T Consensus 485 vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 485 VDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred EccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 8665 5599999999999999999999999999999999986544
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.76 E-value=1.7e-17 Score=161.84 Aligned_cols=182 Identities=21% Similarity=0.375 Sum_probs=147.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHh-cCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFG-EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~-~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
.+.++.+||.|||+++.+.+||++|. +.|+|+-|.+..|.+|++||||.|+|+++|.+++|++.||.+.+.|+.|.|+.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 35677799999999999999999997 68999999999999999999999999999999999999999999999999976
Q ss_pred cccchhHHHH-----------------------------------------------------HHHH-------------
Q 012034 104 AQKKSEREQE-----------------------------------------------------LKGQ------------- 117 (472)
Q Consensus 104 a~~~~~~~~~-----------------------------------------------------~~~~------------- 117 (472)
.......+.- +...
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 5432111100 0000
Q ss_pred --HHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCc
Q 012034 118 --FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195 (472)
Q Consensus 118 --~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~ 195 (472)
|....+. ....-...+||.||...+....|.+.|.-.|.|+++.+--|+.|.++|||.++|+.+-+|..||..+++.
T Consensus 201 ~~Flr~~h~-f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHI-FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccC-CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 0000000 0111123589999999999999999999999999999988888999999999999999999999999987
Q ss_pred EecCeeEEEEEc
Q 012034 196 MIVSKPLYVAVA 207 (472)
Q Consensus 196 ~i~gk~l~V~~a 207 (472)
-+.+++..+.+.
T Consensus 280 g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 280 GLFDRRMTVRLD 291 (608)
T ss_pred CCccccceeecc
Confidence 777777777663
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=3.4e-17 Score=148.80 Aligned_cols=176 Identities=23% Similarity=0.405 Sum_probs=143.1
Q ss_pred CcceEEeCCCCCCCCHHHHHH----HHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 27 KFNNVFVKNLDESTTDEDLKK----IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~----~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
.+.||||.||+..+..++|++ +|+.||.|..|...+ +.+.||-|||.|.+.+.|..|+.+|+|..+-|+.++|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 345999999999999999999 999999998877664 56889999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhhhh----h----------------------------hccccccceeeeecCCCCccHHHHHH
Q 012034 103 KAQKKSEREQELKGQFEQAMK----E----------------------------TVDKFQGLNLYIKNLGDSIDDEKLKE 150 (472)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~----~----------------------------~~~~~~~~~l~V~nL~~~~t~e~L~~ 150 (472)
+|..++..-...+..+..... + .........||+.|||.+++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 998876643321110000000 0 00122345799999999999999999
Q ss_pred HHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec-CeeEEEEEcc
Q 012034 151 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQ 208 (472)
Q Consensus 151 ~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~-gk~l~V~~a~ 208 (472)
+|..|....+++++.. -.+.|||+|.+...|..|...+.+..|- ...+.|.++.
T Consensus 166 lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998875 3678999999999999999999998886 7777777764
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=3.5e-17 Score=144.10 Aligned_cols=83 Identities=30% Similarity=0.576 Sum_probs=78.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++||++|+++|++||.|.++.|+.| .+++++|||||+|++.++|++|++.||+..|+|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45788999999999999999999999999999999999 58999999999999999999999999999999999999998
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7543
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.70 E-value=4.9e-16 Score=148.26 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=141.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCee--------EEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 96 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~--------~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g 96 (472)
.+.+++|||.|||.++|.+++.++|++||-|. .|++.++..|+-||-|.|+|-..|++..|++-|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 46678899999999999999999999999776 4789999999999999999999999999999999999999
Q ss_pred cceeeeccccchhH--------------HHHHHHHHHh------hhhhhccccccceeeeecCCC----Ccc-------H
Q 012034 97 REWYVGKAQKKSER--------------EQELKGQFEQ------AMKETVDKFQGLNLYIKNLGD----SID-------D 145 (472)
Q Consensus 97 ~~l~V~~a~~~~~~--------------~~~~~~~~~~------~~~~~~~~~~~~~l~V~nL~~----~~t-------~ 145 (472)
+.|.|++|+-.... ...+...... ...........++|.++|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999988532111 1111110000 000111122345788888732 122 3
Q ss_pred HHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 146 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 146 e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
++|++.+++||.|.+|.|... ...|.+-|.|.+.++|..||+.|+|+.|+|+.|..++...
T Consensus 291 edl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 688889999999999998743 4578899999999999999999999999999998886543
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.4e-16 Score=150.72 Aligned_cols=206 Identities=20% Similarity=0.406 Sum_probs=153.7
Q ss_pred cccCeeEEEcCcccchhhhhhh-----ccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCC-CCceeEEEEE
Q 012034 2 LINDKQVFVGHFLRKQERETVA-----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVN 75 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~-----~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~-g~skG~aFV~ 75 (472)
+|+|+.|.||+......-+... ..++|++|||..+..+.+|+||+..|+.||+|.+|.+-++.+ +..||||||+
T Consensus 179 mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiE 258 (544)
T KOG0124|consen 179 MLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 258 (544)
T ss_pred cccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEE
Confidence 5788999999766554332221 247899999999999999999999999999999999999965 5689999999
Q ss_pred eCCHHHHHHHHHHHCCCccCCcceeeeccccchhHH--------------------------------------------
Q 012034 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE-------------------------------------------- 111 (472)
Q Consensus 76 F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~-------------------------------------------- 111 (472)
|++..+-..||..||-..++|..|+|.++-.....-
T Consensus 259 y~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~ 338 (544)
T KOG0124|consen 259 YNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGL 338 (544)
T ss_pred eccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccc
Confidence 999999999999999999999999998763221110
Q ss_pred --------------------------------------------------------------------HHHHHHHH--h-
Q 012034 112 --------------------------------------------------------------------QELKGQFE--Q- 120 (472)
Q Consensus 112 --------------------------------------------------------------------~~~~~~~~--~- 120 (472)
+++..+.+ .
T Consensus 339 vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~ 418 (544)
T KOG0124|consen 339 VSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEM 418 (544)
T ss_pred cCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHH
Confidence 00000000 0
Q ss_pred -----------------hhhhhccccccceeeeecC--CCCcc---HHHHHHHHhccCceEEEEEeeCCCCCc-----cc
Q 012034 121 -----------------AMKETVDKFQGLNLYIKNL--GDSID---DEKLKELFSEFGTITSCKVMRDPSGIS-----KG 173 (472)
Q Consensus 121 -----------------~~~~~~~~~~~~~l~V~nL--~~~~t---~e~L~~~F~~~G~I~~v~i~~~~~g~s-----~g 173 (472)
..........++.+.++|. |.+++ +.++++.|++||.|..+.|.....+.. --
T Consensus 419 L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiV 498 (544)
T KOG0124|consen 419 LSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIV 498 (544)
T ss_pred hhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhh
Confidence 0001112223345667776 34444 468899999999999999987654331 22
Q ss_pred EEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 174 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 174 ~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
-.||+|+...++.+|+..|+|+.|+|+++..++.
T Consensus 499 KIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 499 KIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred eeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 4699999999999999999999999999877654
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=5.1e-16 Score=135.90 Aligned_cols=172 Identities=20% Similarity=0.357 Sum_probs=133.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++.|.+|.++|.+||.|..|.+..... .-+||||+|++..||+.||..-+|..++|..|.|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4678899999999999999999999999999998866532 25699999999999999999999999999999999986
Q ss_pred cchhHHHHHHHHHHh---------hhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEE
Q 012034 106 KKSEREQELKGQFEQ---------AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 176 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~af 176 (472)
....... -...+.. ...-...+-....+.|.+||.+-+.+||+++..+-|.|....+.+| |++.
T Consensus 82 ggr~s~~-~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~Gv 154 (241)
T KOG0105|consen 82 GGRSSSD-RRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGV 154 (241)
T ss_pred CCCcccc-cccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------ccee
Confidence 5421100 0000000 0000111222346899999999999999999999999999999987 4789
Q ss_pred EEcCCHHHHHHHHHHhCCcEe--cCeeEEEEE
Q 012034 177 VAFSTPEEASRALAEMNGKMI--VSKPLYVAV 206 (472)
Q Consensus 177 V~f~s~~~A~~Ai~~l~g~~i--~gk~l~V~~ 206 (472)
|.|...|+-+-|+..|....+ .|...++.+
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999999999988765 355544443
No 42
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.64 E-value=4.5e-15 Score=154.26 Aligned_cols=111 Identities=21% Similarity=0.322 Sum_probs=93.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....|||||++|+++++|.+|+.+|+.||+|.+|.++.. +|||||++.+.++|.+|+.+|++..+.++.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 456899999999999999999999999999999999865 899999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHh
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~ 153 (472)
..+.-+. +++.. ....+-|..|||+.-.++|+.+++
T Consensus 493 ~g~G~ks-e~k~~------------wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKS-EYKDY------------WDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcch-hhhhh------------hhcccCeeEeehHhcCHHHHHhhh
Confidence 8776654 44332 334567888898766566555543
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=157.89 Aligned_cols=178 Identities=28% Similarity=0.404 Sum_probs=140.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...+-++|+|||..+..++|.+.|..||.|..+.+- +.|. -++|.|.+..+|+.|++.|....+....+++.|+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 456789999999999999999999999999988433 4443 48999999999999999999999999999999885
Q ss_pred cchhHHH--------HHHHH-------H--------H--------hhhhhh-ccccccceeeeecCCCCccHHHHHHHHh
Q 012034 106 KKSEREQ--------ELKGQ-------F--------E--------QAMKET-VDKFQGLNLYIKNLGDSIDDEKLKELFS 153 (472)
Q Consensus 106 ~~~~~~~--------~~~~~-------~--------~--------~~~~~~-~~~~~~~~l~V~nL~~~~t~e~L~~~F~ 153 (472)
...-... +.... . . ...... ......+.|||+||.+++|.++|...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 4322200 00000 0 0 000000 0111223499999999999999999999
Q ss_pred ccCceEEEEEeeCCCCC----cccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 154 EFGTITSCKVMRDPSGI----SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 154 ~~G~I~~v~i~~~~~g~----s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..|.|.++.|...++.. |.|||||+|.+.++|+.|+..|+|+.|+|+.|.|+++.
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999997766543 56999999999999999999999999999999999988
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1e-15 Score=117.29 Aligned_cols=70 Identities=46% Similarity=0.785 Sum_probs=67.5
Q ss_pred EEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 31 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
|||+|||.++|+++|+++|++||.|..+.+..+.+++++|||||+|++.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988899999999999999999999999999999998874
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=1.8e-15 Score=133.21 Aligned_cols=81 Identities=33% Similarity=0.580 Sum_probs=75.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+||++++|+++|+++|++||.|.+++|+.+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45689999999999999999999999999999998885 78999999999999999999999999999999999999986
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 53
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.62 E-value=4.3e-15 Score=147.98 Aligned_cols=177 Identities=21% Similarity=0.277 Sum_probs=134.0
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
-.-|.+++|||++|++||.++|+.++ |+++.+.+ .+|+..|-|||+|++.|++++|+++ +...+..+.|.|-.+...
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 44588999999999999999999985 56644433 5799999999999999999999985 788889999999877554
Q ss_pred hhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEE-EEEeeCCCCCcccEEEEEcCCHHHHH
Q 012034 108 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEAS 186 (472)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~-v~i~~~~~g~s~g~afV~f~s~~~A~ 186 (472)
... ..++. ...........|-+++||+.||++||.++|+---.|.. +.+..+..+++.|-|||+|++.+.|+
T Consensus 87 e~d-~~~~~------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 87 EAD-WVMRP------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccc-ccccC------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 331 11110 00001112345889999999999999999998755555 55677778899999999999999999
Q ss_pred HHHHHhCCcEecCeeEEEEEcccHHHHHH
Q 012034 187 RALAEMNGKMIVSKPLYVAVAQRKEERRA 215 (472)
Q Consensus 187 ~Ai~~l~g~~i~gk~l~V~~a~~k~~~~~ 215 (472)
+|+. -|.+.|.-+-|.|-.+...+.++.
T Consensus 160 ~Al~-rhre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 160 IALG-RHRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred HHHH-HHHHhhccceEEeehhHHHHHHhh
Confidence 9994 455667777777776655555543
No 47
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=9.5e-16 Score=139.65 Aligned_cols=80 Identities=35% Similarity=0.593 Sum_probs=73.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+..+|+|||++|+|++++|+|+++|++||+|.+++|+.| .+|+|||||||+|.|.|+|.+|++. -.-.|+||+-.|+.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 578999999999999999999999999999999999999 4899999999999999999999985 45668999887776
Q ss_pred cc
Q 012034 104 AQ 105 (472)
Q Consensus 104 a~ 105 (472)
|.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 48
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=4.3e-15 Score=143.65 Aligned_cols=164 Identities=32% Similarity=0.469 Sum_probs=123.0
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
.++|||+|||.++|+++|+++|++||.|..+.+..| .+++++|||||+|.+.++|..|++.+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999999999999 5899999999999999999999999999999999999999652
Q ss_pred ----chhHHHH--HHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCC-cccEEEEEc
Q 012034 107 ----KSEREQE--LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAF 179 (472)
Q Consensus 107 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~-s~g~afV~f 179 (472)
+...... ....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2221100 000001111222334456789999999999999999999999999777766554322 333444444
Q ss_pred CCHHHHHHHHHH
Q 012034 180 STPEEASRALAE 191 (472)
Q Consensus 180 ~s~~~A~~Ai~~ 191 (472)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 444444444433
No 49
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5e-16 Score=142.65 Aligned_cols=168 Identities=27% Similarity=0.442 Sum_probs=132.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
..|||++||+.+.+.+|.++|..||.|..+.+.. ||+||+|++..+|..||..||++.|.+..+.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3699999999999999999999999999887754 599999999999999999999999999999999887432
Q ss_pred hHH-HHHHH-HHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHH
Q 012034 109 ERE-QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 186 (472)
Q Consensus 109 ~~~-~~~~~-~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~ 186 (472)
... ..... .......-....-..+.+.|.++..+++..+|.+.|..+|.++...+ .++++||+|++.++|.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhh
Confidence 111 00000 00000111111223567899999999999999999999999965554 3569999999999999
Q ss_pred HHHHHhCCcEecCeeEEEEEcccH
Q 012034 187 RALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 187 ~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+|++.+++..+.++.|.+...-..
T Consensus 148 ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred hcchhccchhhcCceeeecccCcc
Confidence 999999999999999999544333
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.2e-15 Score=136.66 Aligned_cols=102 Identities=33% Similarity=0.490 Sum_probs=87.9
Q ss_pred eeEEEcCcccchhhhhhh----ccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHH
Q 012034 6 KQVFVGHFLRKQERETVA----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENAD 80 (472)
Q Consensus 6 k~v~v~~~~~~~~r~~~~----~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e 80 (472)
+--||.++.|...+.... .....++|.|.||+.+++|++|+++|.+||.|..+.|.+| .+|.+||||||+|++.+
T Consensus 163 ~g~yvpP~mR~ga~~~~g~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRd 242 (270)
T KOG0122|consen 163 KGKYVPPSMRAGADRASGSDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRD 242 (270)
T ss_pred CccccCccccCCcccccccccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHH
Confidence 345677777766421111 1246788999999999999999999999999999999999 68999999999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeeccccc
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
||.+||+.|||.-++.-.|.|+|+.++
T Consensus 243 dA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 243 DAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHHHHHccCcccceEEEEEEecCCC
Confidence 999999999999999999999999764
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=4.8e-15 Score=156.33 Aligned_cols=149 Identities=23% Similarity=0.265 Sum_probs=107.3
Q ss_pred ccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcC--CCeeEEEEEECCCCCceeEEEEEeCCHH
Q 012034 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRDGDGKSKCFGFVNFENAD 80 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~f--G~I~~v~i~~d~~g~skG~aFV~F~~~e 80 (472)
|.++.|.|....+..+.. .....+.++|||+||++++|+++|+++|++| |+|++|.+++ +||||+|++.+
T Consensus 209 l~Gr~I~VdwA~p~~~~d-~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e 280 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVD-EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDRE 280 (578)
T ss_pred ecCceEEEEeeccccccc-ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHH
Confidence 445566665443332211 1112456889999999999999999999999 9999998764 49999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeeccccchhHHHHH-HH---------HHHhhhhhhccccccceeeeecCCCCccHHHHHH
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-KG---------QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~ 150 (472)
+|.+|++.||+..|+|+.|.|.|+......+... .. ..+.............+++++|+++..+++.+.+
T Consensus 281 ~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~ 360 (578)
T TIGR01648 281 DAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLH 360 (578)
T ss_pred HHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhh
Confidence 9999999999999999999999997654321100 00 0000000001112346899999999999999999
Q ss_pred HHhccCceE
Q 012034 151 LFSEFGTIT 159 (472)
Q Consensus 151 ~F~~~G~I~ 159 (472)
+|..+|.|.
T Consensus 361 ~f~~~g~~~ 369 (578)
T TIGR01648 361 FPRMPGPIR 369 (578)
T ss_pred ccccCcccc
Confidence 999998643
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.1e-14 Score=146.10 Aligned_cols=99 Identities=29% Similarity=0.459 Sum_probs=83.2
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e 80 (472)
.|.+++|.|....... .....++|||+|||+++||++|+++|++||+|.++.|+.|. ++++||||||+|++.+
T Consensus 173 ~l~gr~i~V~~a~p~~------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 173 TVRNKRLKVSYARPGG------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred ccCCceeeeecccccc------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 3556777776543221 12356789999999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHHHCCCccCC--cceeeecccc
Q 012034 81 DAAKAVEALNGKKFDD--REWYVGKAQK 106 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g--~~l~V~~a~~ 106 (472)
+|++||+.||+..+.+ +.|.|.++..
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 9999999999999876 5788888764
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=128.29 Aligned_cols=169 Identities=20% Similarity=0.358 Sum_probs=124.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CC-CCceeEEEEEeCCHHHHHHHHHHHCCCccC---Cccee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GD-GKSKCFGFVNFENADDAAKAVEALNGKKFD---DREWY 100 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~-g~skG~aFV~F~~~e~A~~Av~~lng~~i~---g~~l~ 100 (472)
..-+||||.+||.|+.-.+|..+|..|--.+...+... +. .-.+-+|||+|.+..+|..|+.+|||..|+ +..|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 45899999999999999999999999855555555554 22 235679999999999999999999999986 56777
Q ss_pred eeccccchhHHHH--------------------HH-HHHH----------------------------------------
Q 012034 101 VGKAQKKSEREQE--------------------LK-GQFE---------------------------------------- 119 (472)
Q Consensus 101 V~~a~~~~~~~~~--------------------~~-~~~~---------------------------------------- 119 (472)
++.++...++.+. .. ...+
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 7776544433210 00 0000
Q ss_pred -------hhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh
Q 012034 120 -------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192 (472)
Q Consensus 120 -------~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l 192 (472)
....-......+++|||.||..++|+++|+.+|+.|-....++|... +| -..||+.|++.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHh
Confidence 00000001112357999999999999999999999987777776542 33 347999999999999999999
Q ss_pred CCcEe
Q 012034 193 NGKMI 197 (472)
Q Consensus 193 ~g~~i 197 (472)
+|..|
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 99876
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.2e-14 Score=148.44 Aligned_cols=186 Identities=21% Similarity=0.389 Sum_probs=140.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
.....+||++||...++++++|+++.||.+....+..| .+|.++||||.+|.+......|+..|||+.+.++.|.|.+|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 45678999999999999999999999999999999999 46999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHH----h--hhhhhccccccceeeeecC--CCCc-c-------HHHHHHHHhccCceEEEEEeeC-C
Q 012034 105 QKKSEREQELKGQFE----Q--AMKETVDKFQGLNLYIKNL--GDSI-D-------DEKLKELFSEFGTITSCKVMRD-P 167 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~l~V~nL--~~~~-t-------~e~L~~~F~~~G~I~~v~i~~~-~ 167 (472)
............... . .............|.+.|+ ++++ + -|+++..|++||.|.+|.|.++ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 655443222211000 0 0000001111112333332 1111 1 1577778889999999999887 3
Q ss_pred C---CCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 168 S---GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 168 ~---g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
+ .-..|..||+|.+.+++++|.++|+|..|.++.|..+|.....
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 2 2346778999999999999999999999999999999876554
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=3.6e-14 Score=108.69 Aligned_cols=70 Identities=47% Similarity=0.797 Sum_probs=67.4
Q ss_pred eeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEE
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~ 203 (472)
|||+|||.++|+++|+++|+.||.|..+.+..+.++.++++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999987889999999999999999999999999999999885
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=3.5e-14 Score=109.20 Aligned_cols=70 Identities=40% Similarity=0.777 Sum_probs=65.1
Q ss_pred EEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 31 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
|||+|||+++|+++|+++|+.||.|..+.+..++++.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999997799999999999999999999999999999999874
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.3e-14 Score=137.55 Aligned_cols=86 Identities=29% Similarity=0.474 Sum_probs=78.8
Q ss_pred hhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 21 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 21 ~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
.+..+..-++|+|.|||+...|-||+.+|++||.|.+|.|+.++.| |||||||+|++.+||++|-++|||..|.||+|.
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3334567789999999999999999999999999999999998666 799999999999999999999999999999999
Q ss_pred eeccccc
Q 012034 101 VGKAQKK 107 (472)
Q Consensus 101 V~~a~~~ 107 (472)
|..+..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998765
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.1e-14 Score=123.29 Aligned_cols=78 Identities=32% Similarity=0.515 Sum_probs=72.3
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
-.++|||+||+.++++.||..+|..||.|.+|||-.. ..|||||+|++..||..|+..|+|+.|+|..|.|+.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3788999999999999999999999999999999885 467999999999999999999999999999999998765
Q ss_pred ch
Q 012034 107 KS 108 (472)
Q Consensus 107 ~~ 108 (472)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=7.5e-13 Score=127.85 Aligned_cols=184 Identities=18% Similarity=0.228 Sum_probs=137.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcC----CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEY----GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~f----G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
.+.-.|.+++||.++++.++.++|..- |....|.++...+|+..|-|||.|..+++|..|+.+ |...|+.|.|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 346678999999999999999999632 355678888888999999999999999999999986 556666677777
Q ss_pred eccccchhHHHHHHHHHHhhhh--------------hhccccccceeeeecCCCCccHHHHHHHHhccCc-eEE--EEEe
Q 012034 102 GKAQKKSEREQELKGQFEQAMK--------------ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT-ITS--CKVM 164 (472)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~-I~~--v~i~ 164 (472)
-++.+. +.+..+.+....... .........+|.+++||++.+.|||.++|..|.. |.. |.+.
T Consensus 238 FRSTaa-Evqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 238 FRSTAA-EVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHhHH-HHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 666443 333333222211000 0001112347999999999999999999999974 444 6777
Q ss_pred eCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 165 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 165 ~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
.+..|+..|-|||.|.+.++|..|....|.+...++.|.|--+.-.+
T Consensus 317 ~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 317 LNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred EcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 88889999999999999999999999988887777777665544443
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.1e-13 Score=130.50 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=71.3
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
.++|||+||++++|+++|+++|+.||+|.+|.|..|.. ++|||||+|++.++|..|+. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57899999999999999999999999999999998853 57999999999999999995 9999999999999998643
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=4.6e-13 Score=102.91 Aligned_cols=70 Identities=40% Similarity=0.701 Sum_probs=65.2
Q ss_pred eeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEE
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~ 203 (472)
|||+|||+++++++|+++|+.||.|..+.+..++++.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987789999999999999999999999999999999874
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=126.15 Aligned_cols=78 Identities=31% Similarity=0.482 Sum_probs=70.3
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
-++|||++|+|++.+|+|+++|++||+|+++.|+.|+ +|+||||+||+|.|.++|.+|++..| -.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 3579999999999999999999999999999999996 89999999999999999999996544 578999988887653
No 63
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.4e-13 Score=127.69 Aligned_cols=81 Identities=30% Similarity=0.549 Sum_probs=77.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
.+.++||||..|+.+++|.+|++.|+.||.|+.|.|+.| .+|+++|||||+|+++.+...|.+..+|..|+|+.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 478999999999999999999999999999999999999 6999999999999999999999999999999999999875
Q ss_pred cc
Q 012034 104 AQ 105 (472)
Q Consensus 104 a~ 105 (472)
..
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 43
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3.7e-13 Score=133.65 Aligned_cols=80 Identities=25% Similarity=0.421 Sum_probs=73.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCH--HHHHHHHHHHCCCccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA--DDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~--e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
.....+|||+||++++|+++|+..|+.||.|.+|.|+++ +| ||||||+|.+. +++.+||+.|||..+.|+.|+|.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 355788999999999999999999999999999999944 56 89999999987 78999999999999999999999
Q ss_pred ccccc
Q 012034 103 KAQKK 107 (472)
Q Consensus 103 ~a~~~ 107 (472)
.|+..
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99754
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=7e-13 Score=100.96 Aligned_cols=72 Identities=49% Similarity=0.775 Sum_probs=67.6
Q ss_pred eEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
+|||+|||.++++++|+++|++||.|..+.+..+. +.++|+|||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999887 7789999999999999999999999999999988763
No 66
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.1e-14 Score=125.57 Aligned_cols=79 Identities=30% Similarity=0.491 Sum_probs=74.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..-=|||+|||.+.||.+|.-+|++||+|..|.+++| .||+|+||||++|++..+..-||..|||..|.||.|+|..-.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3455999999999999999999999999999999999 699999999999999999999999999999999999997543
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=5.5e-13 Score=126.72 Aligned_cols=80 Identities=29% Similarity=0.532 Sum_probs=74.4
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
....|||.|||+..-|-||+..|++||.|.+|.|+.++.| ||||+||+|++.+||++|-++|||..|.||+|.|..+..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457999999999999999999999999999999987554 799999999999999999999999999999999998876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 6
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=103.51 Aligned_cols=83 Identities=28% Similarity=0.395 Sum_probs=74.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....+-|||+|||+++|.|+..++|.+||.|..|+|-.++ ..+|-|||.|++..+|++|++.|+|..++++.|.|...
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3557889999999999999999999999999999887653 45899999999999999999999999999999999987
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
+....
T Consensus 93 q~~~~ 97 (124)
T KOG0114|consen 93 QPEDA 97 (124)
T ss_pred CHHHH
Confidence 65433
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=3e-12 Score=125.55 Aligned_cols=72 Identities=33% Similarity=0.483 Sum_probs=67.1
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
|.|+|+|||.++|+..|++-|.+||.|.++.|+. +|+++| .|.|.++++|++|+..|+|..++|+.|.|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 5699999999999999999999999999999965 478887 89999999999999999999999999999874
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.2e-12 Score=121.50 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=71.4
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
..++|||+||++++|+++|+++|+.||+|.+|.|++| ++++|||||+|++.++|..|+ .|+|..|.++.|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4578999999999999999999999999999999988 456789999999999999999 5999999999999988754
Q ss_pred c
Q 012034 107 K 107 (472)
Q Consensus 107 ~ 107 (472)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.38 E-value=2.3e-11 Score=127.03 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=74.2
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
+..++||||+.|+..+++.||..+|+.||.|.+|.++.. +|||||++.+..+|.+|+.+|+...+.++.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 345679999999999999999999999999999999875 899999999999999999999999999999999999
Q ss_pred ccHHHH
Q 012034 208 QRKEER 213 (472)
Q Consensus 208 ~~k~~~ 213 (472)
..+..+
T Consensus 493 ~g~G~k 498 (894)
T KOG0132|consen 493 VGKGPK 498 (894)
T ss_pred ccCCcc
Confidence 776443
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-12 Score=119.65 Aligned_cols=81 Identities=33% Similarity=0.566 Sum_probs=76.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|-|.||+.++++++|+++|.+||.|..+.|.+|+ +|.+||||||+|.+.++|.+||..|||.-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45679999999999999999999999999999999885 89999999999999999999999999999999999999997
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.3e-12 Score=121.65 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=69.2
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.++|||+||++.+|+++|+++|+.||.|++|.|..+. .++|||||+|.+.++|..|+ .|+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 3589999999999999999999999999999999874 35799999999999999999 599999999999999754
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=108.26 Aligned_cols=82 Identities=28% Similarity=0.404 Sum_probs=74.7
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
.++.+||||+||+..++||.|.++|+++|+|..|.+--|+ +...=||+||+|.+.++|..|++.+++..++.+.|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4789999999999999999999999999999998887775 455679999999999999999999999999999999988
Q ss_pred ccc
Q 012034 104 AQK 106 (472)
Q Consensus 104 a~~ 106 (472)
.-.
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 643
No 75
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.5e-12 Score=132.63 Aligned_cols=85 Identities=33% Similarity=0.572 Sum_probs=79.9
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
+.|||+|||++++|++|.++|+..|.|.++++++| .+|+.||||||+|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999 58999999999999999999999999999999999999999876
Q ss_pred hhHHHH
Q 012034 108 SEREQE 113 (472)
Q Consensus 108 ~~~~~~ 113 (472)
..++..
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 655443
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=8.6e-13 Score=117.81 Aligned_cols=80 Identities=33% Similarity=0.567 Sum_probs=76.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|.|-||..-+|-++|+.+|++||.|-.|.|.+| -|+.++|||||-|.+..+|+.|+++|+|..|+|+.|.|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 46789999999999999999999999999999999999 48999999999999999999999999999999999999987
Q ss_pred c
Q 012034 105 Q 105 (472)
Q Consensus 105 ~ 105 (472)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=3.5e-12 Score=96.65 Aligned_cols=70 Identities=49% Similarity=0.780 Sum_probs=65.6
Q ss_pred eCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 33 VKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 33 V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
|+|||.++++++|+++|+.||.|..+.+..+. +++++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999885 58899999999999999999999999999999998873
No 78
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=7.4e-12 Score=95.77 Aligned_cols=74 Identities=46% Similarity=0.750 Sum_probs=69.6
Q ss_pred eEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+|+|+|||.++++++|+++|+.||.|..+.+..+..++.+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999987778899999999999999999999999999999998864
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=1.3e-12 Score=116.75 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=74.0
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
-++|.|.||.+.++.++|+.+|++||.|-+|.|..|. ++.++|||||.|.+..+|+.|++.|+|.+++|+.|.|.+|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3579999999999999999999999999999999997 78899999999999999999999999999999999999764
No 80
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.34 E-value=1.2e-11 Score=120.80 Aligned_cols=175 Identities=21% Similarity=0.315 Sum_probs=135.4
Q ss_pred cceEEeCCCC-CCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 28 FNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp-~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
.+.|.|.||. ..+|.+.|.-+|+-||+|..|+|.+++ +--|.|.|.|...|.-|++.|+|..+.|++|+|..++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6778899997 568999999999999999999999974 24799999999999999999999999999999988754
Q ss_pred chhH-------HHHHHHHHHhhhh-----hhccc-----cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCC
Q 012034 107 KSER-------EQELKGQFEQAMK-----ETVDK-----FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 169 (472)
Q Consensus 107 ~~~~-------~~~~~~~~~~~~~-----~~~~~-----~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g 169 (472)
.... ...+...+...-. ..... .++.+|++.|+|.++++|+|++.|.+-|...+...+..
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~--- 449 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--- 449 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---
Confidence 3211 1111111111100 00111 23457999999999999999999999887665544432
Q ss_pred CcccEEEEEcCCHHHHHHHHHHhCCcEecCe-eEEEEEccc
Q 012034 170 ISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYVAVAQR 209 (472)
Q Consensus 170 ~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk-~l~V~~a~~ 209 (472)
+.+.++++.+.+.|+|..|+-.+|.+.+++. .++|+|++.
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 2366999999999999999999999998755 899998764
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.33 E-value=3.5e-12 Score=124.35 Aligned_cols=175 Identities=17% Similarity=0.280 Sum_probs=126.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc--cCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK--FDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~--i~g~~l~V~~ 103 (472)
...+-|.++|||++++|++|.+++.+||.|+.+...+. +..||++|.|.++|...+....... +.|+.|+|.+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 46778999999999999999999999999999988876 3389999999999998665544333 7889999988
Q ss_pred cccchhHH------HHHHHHHHh--hhhhhcc------cccc--------ceeeeecCCCCccHHHHHHHHhccCceEEE
Q 012034 104 AQKKSERE------QELKGQFEQ--AMKETVD------KFQG--------LNLYIKNLGDSIDDEKLKELFSEFGTITSC 161 (472)
Q Consensus 104 a~~~~~~~------~~~~~~~~~--~~~~~~~------~~~~--------~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v 161 (472)
+..+.... ..-+..+.. ...+... ...| ..++|.|+-+.++-|.|..+|++||.|..|
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 64332111 000000000 0000000 0001 236788999999999999999999999998
Q ss_pred EEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 162 ~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.-+...++- .|+|.|.+.+.|..|...|+|+.|...++.+++.-
T Consensus 181 iTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 181 ITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred EEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 777664443 48999999999999999999999865555444433
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1e-11 Score=94.40 Aligned_cols=72 Identities=43% Similarity=0.746 Sum_probs=67.5
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
+|||+||+..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 7789999999999999999999999999999998873
No 83
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.2e-12 Score=110.27 Aligned_cols=77 Identities=29% Similarity=0.538 Sum_probs=71.6
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..+.|||+||+..+++.||..+|..||.|.+|.|-.. ..|||||+|++..+|..|+..|+|+.|+|..|.|++..-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4678999999999999999999999999999999875 588999999999999999999999999999999998765
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
.
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 4
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=1.8e-11 Score=121.85 Aligned_cols=79 Identities=23% Similarity=0.455 Sum_probs=72.7
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCH--HHHHHHHHHhCCcEecCeeEEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP--EEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~--~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
..+.+|||+||.+.+++++|+..|+.||.|.+|.|+++ +| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34568999999999999999999999999999999955 55 99999999987 789999999999999999999999
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
|+..
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9876
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.9e-12 Score=116.51 Aligned_cols=82 Identities=29% Similarity=0.467 Sum_probs=77.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||++|..++||.-|...|-+||.|..|.+.-| .+.+.||||||+|+..|||..||..||+.++.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35688999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 754
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.3e-11 Score=113.07 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=70.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|+++ +.+++||||+|.+.++|..|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4578999999999999999999999999999999987 566789999999999999999 899999999999998544
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=7.1e-12 Score=104.64 Aligned_cols=83 Identities=28% Similarity=0.421 Sum_probs=77.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
..-+.|||.++..++||++|.+.|..||+|+++.+--| .+|-.||||.|+|++.+.|.+|++.+||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45678999999999999999999999999999999888 69999999999999999999999999999999999999998
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 6543
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.1e-11 Score=114.77 Aligned_cols=82 Identities=23% Similarity=0.467 Sum_probs=76.8
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.-++|||..|+.++++.+|++.|+.||.|+.|.|+.|. +|+++|||||+|++..+...|.+..+|..|+|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 34689999999999999999999999999999999994 99999999999999999999999999999999999999866
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 180 gRT 182 (335)
T KOG0113|consen 180 GRT 182 (335)
T ss_pred ccc
Confidence 554
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=5.3e-11 Score=95.04 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=71.6
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
.-|||+|||..+|.|+..++|.+||.|..|+|-.. -.-+|-|||.|++..+|.+|++.|+|..+.++.+.|-+.+...
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 46999999999999999999999999999999654 2358999999999999999999999999999999999887654
Q ss_pred H
Q 012034 212 E 212 (472)
Q Consensus 212 ~ 212 (472)
.
T Consensus 97 ~ 97 (124)
T KOG0114|consen 97 A 97 (124)
T ss_pred H
Confidence 4
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1e-12 Score=115.09 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=72.3
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
.-|||+|||+++|+.||.-+|++||.|..|.+++|. +|+|+||||+||++..+.--|+..|||..|.|+.|+|...
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 469999999999999999999999999999999996 8999999999999999999999999999999999999743
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.4e-11 Score=90.49 Aligned_cols=70 Identities=44% Similarity=0.763 Sum_probs=65.0
Q ss_pred eecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 136 V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
|+||+..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998876 47889999999999999999999999999999998873
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=8.5e-11 Score=89.78 Aligned_cols=74 Identities=41% Similarity=0.719 Sum_probs=69.5
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+..+|+|||.|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887777899999999999999999999999999999998864
No 93
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=3.4e-11 Score=92.64 Aligned_cols=60 Identities=30% Similarity=0.527 Sum_probs=54.1
Q ss_pred HHHHHHHHh----cCCCeeEEE-EEEC-CC--CCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 42 DEDLKKIFG----EYGTITSAV-VMRD-GD--GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 42 ee~L~~~F~----~fG~I~~v~-i~~d-~~--g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
+++|+++|+ +||.|.++. |..+ .+ ++++|||||+|++.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999996 6555 44 889999999999999999999999999999999876
No 94
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.7e-11 Score=121.02 Aligned_cols=78 Identities=38% Similarity=0.620 Sum_probs=73.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
.+-.-|||+||+.++|||.|+++|++||.|+.|+.++| ||||.|.+.++|.+|++.+||++|+|..|.|..|+
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 56778999999999999999999999999999999988 99999999999999999999999999999999998
Q ss_pred cchhH
Q 012034 106 KKSER 110 (472)
Q Consensus 106 ~~~~~ 110 (472)
...++
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 76554
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.21 E-value=1.1e-09 Score=104.97 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=68.7
Q ss_pred ceeeeecCCCCccHHHHHHHHhccC--ceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G--~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.++||+||-|++|++||.+.+...| .+.+++++.++ +|.|||||+|...+..+.++.++.|..++|+|..-.|.-..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4799999999999999999998887 56777888776 78999999999999999999999999999999877766554
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
+.
T Consensus 161 K~ 162 (498)
T KOG4849|consen 161 KT 162 (498)
T ss_pred hh
Confidence 44
No 96
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3.2e-11 Score=99.99 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=74.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+||...++||.|.++|+++|.|..|.+-.|+ +-..=|||||+|.+.++|..|+.-++|..++.++|.+.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46799999999999999999999999999999887775 44577999999999999999999999999999999999876
Q ss_pred cHHH
Q 012034 209 RKEE 212 (472)
Q Consensus 209 ~k~~ 212 (472)
.-.+
T Consensus 115 GF~e 118 (153)
T KOG0121|consen 115 GFVE 118 (153)
T ss_pred cchh
Confidence 5443
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=4.7e-11 Score=87.55 Aligned_cols=56 Identities=36% Similarity=0.704 Sum_probs=51.0
Q ss_pred HHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 45 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 45 L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
|+++|++||+|.++.+..+. +++|||+|.+.++|.+|++.||+..+.|+.|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997764 589999999999999999999999999999999875
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=6.9e-11 Score=98.77 Aligned_cols=84 Identities=21% Similarity=0.439 Sum_probs=77.8
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
...++-|||.++..+.++++|.+.|..||.|+.+.+-.|+ +|..+|||+|+|++.++|++|++.+||..+.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3456789999999999999999999999999999998775 899999999999999999999999999999999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
+.-+.
T Consensus 149 ~Fv~g 153 (170)
T KOG0130|consen 149 CFVKG 153 (170)
T ss_pred EEecC
Confidence 87653
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-11 Score=111.12 Aligned_cols=80 Identities=29% Similarity=0.509 Sum_probs=75.6
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.++|||++|.+++|+.-|...|-.||.|..|.+..| .+++.|||+||+|.-.|+|..||+.||+.++.|+.|+|.++.+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 458999999999999999999999999999999888 4788999999999999999999999999999999999999976
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
.
T Consensus 90 ~ 90 (298)
T KOG0111|consen 90 E 90 (298)
T ss_pred c
Confidence 4
No 100
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.5e-11 Score=112.32 Aligned_cols=83 Identities=34% Similarity=0.548 Sum_probs=77.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
.+-+||||..||.+..+.||...|-.||.|.|.+|..| .|+.||+||||.|.+..+|+.||.+|||..|+-++|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 56899999999999999999999999999999999999 58999999999999999999999999999999999999876
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 6553
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.17 E-value=5.9e-11 Score=114.56 Aligned_cols=79 Identities=38% Similarity=0.685 Sum_probs=75.3
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.++|||+||+..+|+++|+++|..||.|..+.+..++ .+.++|||||+|.+.++|..|+..+++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5789999999999999999999999999999999985 899999999999999999999999999999999999999764
No 102
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5.9e-12 Score=113.50 Aligned_cols=140 Identities=23% Similarity=0.325 Sum_probs=118.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...+||||.|+-..+||+-|.|+|-.-|.|..|.|..+.+++.| ||||.|+++-+..-|++-+||..+.++.+.|..-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45788999999999999999999999999999999999888888 99999999999999999999999998888775433
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A 185 (472)
..+.. -|+..++++.+.+.|+.-|.+..+++.++.+|+.+.++|+.+......
T Consensus 86 G~sha---------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 86 GNSHA---------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CCCcc---------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 22110 156678899999999999999999999999999999999988766655
Q ss_pred HHHHHHhC
Q 012034 186 SRALAEMN 193 (472)
Q Consensus 186 ~~Ai~~l~ 193 (472)
-.++....
T Consensus 139 P~~~~~y~ 146 (267)
T KOG4454|consen 139 PFALDLYQ 146 (267)
T ss_pred cHHhhhhc
Confidence 55554333
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.16 E-value=1.2e-09 Score=105.67 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=123.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH--CCCccCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL--NGKKFDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l--ng~~i~g~~l~V~~ 103 (472)
...--|.|++|-..++|.+|.+.++.||.|.-+..+.. +.-|.|+|+|.+.|+.+|.-- +-..+.|..-.+.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 44567999999999999999999999999988877765 447999999999999999632 23335666555555
Q ss_pred cccchhHHHHHHHHHHhhhhhhcccccccee--eeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCC
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNL--YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST 181 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s 181 (472)
+..+..+ ....++ ...+..| .|-|--+.+|.+.|..++...|.|..|.|++. +|. .|.|+|++
T Consensus 104 Stsq~i~---------R~g~es--~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFds 168 (494)
T KOG1456|consen 104 STSQCIE---------RPGDES--ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDS 168 (494)
T ss_pred chhhhhc---------cCCCCC--CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeech
Confidence 5322110 001111 1111123 35566688999999999999999999999986 444 69999999
Q ss_pred HHHHHHHHHHhCCcEec--CeeEEEEEcccHH
Q 012034 182 PEEASRALAEMNGKMIV--SKPLYVAVAQRKE 211 (472)
Q Consensus 182 ~~~A~~Ai~~l~g~~i~--gk~l~V~~a~~k~ 211 (472)
.+.|++|...|||..|. ...|+|+||+...
T Consensus 169 v~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 169 VEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 99999999999998874 4678888887653
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=2e-10 Score=84.19 Aligned_cols=56 Identities=36% Similarity=0.711 Sum_probs=51.4
Q ss_pred HHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 148 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 148 L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998763 589999999999999999999999999999999985
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=1e-10 Score=119.34 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=79.0
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+++||+|+++++++++|.++|+..|.|.++++..|+ +|+++|||||+|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999999999986 8999999999999999999999999999999999999999877
Q ss_pred HHHHH
Q 012034 211 EERRA 215 (472)
Q Consensus 211 ~~~~~ 215 (472)
..+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65543
No 106
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=8.2e-11 Score=103.47 Aligned_cols=102 Identities=28% Similarity=0.446 Sum_probs=84.9
Q ss_pred ccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE-EEEEECC-CCCceeEEEEEeCCHH
Q 012034 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDG-DGKSKCFGFVNFENAD 80 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~-~g~skG~aFV~F~~~e 80 (472)
|-|+.|+|.+....++. .....+|||+||..+++|.-|.+.|+.||.|.+ -.|++|. +|+++|||||.|.+.|
T Consensus 76 LYgrpIrv~kas~~~~n-----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKN-----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred hcCceeEEEeccccccc-----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 45677777766532222 234588999999999999999999999998765 4677874 6999999999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeeccccchh
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQKKSE 109 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~~~~~ 109 (472)
.+.+|++++||..++.+.+.|..+.++..
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999999999876654
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.10 E-value=5.9e-11 Score=109.43 Aligned_cols=173 Identities=27% Similarity=0.422 Sum_probs=137.0
Q ss_pred CcceEEeCCCCCCCCHHH-H--HHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 27 KFNNVFVKNLDESTTDED-L--KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~-L--~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+.-.+++.++-.++..+- | ...|+.+-......+.++..+.-++++|+.|.....-.++-..-+++.+....+++..
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 344567777766666655 3 6778888888888888888888899999999988777777766677777777777776
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCH
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
++...+.... .-......||.+.|..+++++.|-+.|.+|-.....++++|. +|+++||+||.|.+.
T Consensus 175 gtswedPsl~------------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~p 242 (290)
T KOG0226|consen 175 GTSWEDPSLA------------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDP 242 (290)
T ss_pred ccccCCcccc------------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCH
Confidence 6655443211 011234579999999999999999999999988889999885 899999999999999
Q ss_pred HHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 183 EEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
+++..|+.+|+|+.++.++|.+..+.-++
T Consensus 243 ad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 243 ADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999999887554443
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.5e-10 Score=87.02 Aligned_cols=60 Identities=25% Similarity=0.539 Sum_probs=53.2
Q ss_pred HHHHHHHHh----ccCceEEEE-EeeCC-C--CCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 145 DEKLKELFS----EFGTITSCK-VMRDP-S--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 145 ~e~L~~~F~----~~G~I~~v~-i~~~~-~--g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
+++|+++|+ .||.|.++. |..++ + +.++|||||.|.+.++|.+|+..|||+.+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 55443 4 889999999999999999999999999999999976
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6.4e-10 Score=112.20 Aligned_cols=161 Identities=18% Similarity=0.317 Sum_probs=114.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CC--Ccee---EEEEEeCCHHHHHHHHHHHCCCccCCcce
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG--KSKC---FGFVNFENADDAAKAVEALNGKKFDDREW 99 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g--~skG---~aFV~F~~~e~A~~Av~~lng~~i~g~~l 99 (472)
.-.++|||++||++++|+.|...|..||.+..-+-.+.. .+ -.+| |+|+.|+++.+++.-+.+..- +...+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 567889999999999999999999999997654443221 11 2456 999999999999988876432 33344
Q ss_pred eeeccccchhHHH----H---HHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHh-ccCceEEEEEeeC-CCCC
Q 012034 100 YVGKAQKKSEREQ----E---LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGTITSCKVMRD-PSGI 170 (472)
Q Consensus 100 ~V~~a~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~-~~G~I~~v~i~~~-~~g~ 170 (472)
++........... . ....+. ......-....+|||++||.-++.++|..+|+ .||.|..+-|-.| +-+.
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv--~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFV--LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhh--hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 4432221111000 0 000000 00111222346899999999999999999999 7999999999988 4577
Q ss_pred cccEEEEEcCCHHHHHHHHHH
Q 012034 171 SKGSGFVAFSTPEEASRALAE 191 (472)
Q Consensus 171 s~g~afV~f~s~~~A~~Ai~~ 191 (472)
.+|-|-|+|++..+=.+||++
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 899999999999999999864
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.8e-10 Score=118.24 Aligned_cols=178 Identities=21% Similarity=0.367 Sum_probs=137.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcC-----------C-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEY-----------G-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~f-----------G-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~ 93 (472)
.....+||++++..++++.+..+|+.- | .|.++.+-. .+.|+|++|.+.++|..|+. +++..
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchh
Confidence 446779999999999999999999754 2 255555543 36799999999999999985 78999
Q ss_pred cCCcceeeeccccchhHHHHHHH-----HHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-
Q 012034 94 FDDREWYVGKAQKKSEREQELKG-----QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP- 167 (472)
Q Consensus 94 i~g~~l~V~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~- 167 (472)
+.|..+.+.+...+.....-... .+...............+||++|+..++++.++++.+.||.+....++.+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 99998888765433221111100 111111112222334579999999999999999999999999999998886
Q ss_pred CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 168 ~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
+|.++||||++|.+...+..|+..|||..+.++.|.|..+-.
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 589999999999999999999999999999999999986543
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.06 E-value=1.9e-09 Score=104.24 Aligned_cols=198 Identities=20% Similarity=0.288 Sum_probs=140.7
Q ss_pred ccCeeEEEcCcccc-hhhhhhhccCCcceEEeCCC--CCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCH
Q 012034 3 INDKQVFVGHFLRK-QERETVAIKTKFNNVFVKNL--DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 79 (472)
Q Consensus 3 ~~~k~v~v~~~~~~-~~r~~~~~~~~~~~l~V~nL--p~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~ 79 (472)
|++++-++.+..+. -+|..........-|.+.=| =.-+|-+-|..+....|.|..|.|++. +|- .|.|+|++.
T Consensus 94 i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv 169 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSV 169 (494)
T ss_pred ccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechh
Confidence 55666666655332 33333222334444444433 367899999999999999999999886 443 799999999
Q ss_pred HHHHHHHHHHCCCccC-C-cceeeeccccchhHHHH-----HH-------HHH--------------------Hh-----
Q 012034 80 DDAAKAVEALNGKKFD-D-REWYVGKAQKKSEREQE-----LK-------GQF--------------------EQ----- 120 (472)
Q Consensus 80 e~A~~Av~~lng~~i~-g-~~l~V~~a~~~~~~~~~-----~~-------~~~--------------------~~----- 120 (472)
+.|++|..+|||..|- | +.|+|++|+....+-.. +. ..+ ++
T Consensus 170 ~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h 249 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGH 249 (494)
T ss_pred HHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCC
Confidence 9999999999999874 3 47788777543221000 00 000 00
Q ss_pred ---------------------hhhh------hccccccceeeeecCC-CCccHHHHHHHHhccCceEEEEEeeCCCCCcc
Q 012034 121 ---------------------AMKE------TVDKFQGLNLYIKNLG-DSIDDEKLKELFSEFGTITSCKVMRDPSGISK 172 (472)
Q Consensus 121 ---------------------~~~~------~~~~~~~~~l~V~nL~-~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~ 172 (472)
.... .....+++.+.|-+|+ ..++-+.|..+|..||.|+.|++++.+ .
T Consensus 250 ~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~ 325 (494)
T KOG1456|consen 250 SGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----P 325 (494)
T ss_pred CCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----c
Confidence 0000 0112245678898998 467789999999999999999999874 5
Q ss_pred cEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 173 g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
|-|.|++.|..+.++|+..||+..+.|.+|.|.+++
T Consensus 326 gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 326 GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 679999999999999999999999999999998765
No 112
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=3.1e-10 Score=106.55 Aligned_cols=91 Identities=22% Similarity=0.464 Sum_probs=81.1
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~ 81 (472)
.|+|+.|.|....+| .+..++|+|+||...++.+||+..|++||.|.++.|++| |+||.|+..++
T Consensus 60 tLhg~nInVeaSksK--------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~ed 124 (346)
T KOG0109|consen 60 TLHGVNINVEASKSK--------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAED 124 (346)
T ss_pred eecceEEEEEecccc--------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccc
Confidence 367777777665544 256889999999999999999999999999999999987 99999999999
Q ss_pred HHHHHHHHCCCccCCcceeeeccccc
Q 012034 82 AAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 82 A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
|..|++.|++.++.|+++.|+.+.++
T Consensus 125 a~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 125 AVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hHHHHhcccccccccceeeeeeeccc
Confidence 99999999999999999999987654
No 113
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.99 E-value=7e-09 Score=104.15 Aligned_cols=163 Identities=19% Similarity=0.279 Sum_probs=122.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE-EEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
.....|.+++||+.||++||.++|+-.-.+.. +.+..|..+++.|-|||+|++.|+|+.|+.. |.+.|..+-|.|-++
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 46778999999999999999999998766665 6677788899999999999999999999986 677788888888776
Q ss_pred ccchhHHHHHH--------HHHHh------------------------------------------------------hh
Q 012034 105 QKKSEREQELK--------GQFEQ------------------------------------------------------AM 122 (472)
Q Consensus 105 ~~~~~~~~~~~--------~~~~~------------------------------------------------------~~ 122 (472)
.....+...-. ..++. ..
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 54433322100 00000 00
Q ss_pred -hh-hcc-----------ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHH
Q 012034 123 -KE-TVD-----------KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189 (472)
Q Consensus 123 -~~-~~~-----------~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai 189 (472)
.+ ... ...+..++..+||...++.++..+|+..-.+ .|.|--.++|+..|-|+|+|.+.++|..|+
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 00 000 0011347788999999999999999986544 677777788999999999999999999998
Q ss_pred H
Q 012034 190 A 190 (472)
Q Consensus 190 ~ 190 (472)
.
T Consensus 339 s 339 (510)
T KOG4211|consen 339 G 339 (510)
T ss_pred c
Confidence 4
No 114
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=5.2e-10 Score=109.50 Aligned_cols=106 Identities=25% Similarity=0.454 Sum_probs=92.5
Q ss_pred ccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHH
Q 012034 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADD 81 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~ 81 (472)
|.++.|.+-+.+++.+...........+|||++||.++++++|+++|++||.|..+.++.| .+.+.+||+||.|.++++
T Consensus 72 ~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 72 LDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred cCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 5677788888888887765444445779999999999999999999999999999999999 578999999999999999
Q ss_pred HHHHHHHHCCCccCCcceeeeccccchh
Q 012034 82 AAKAVEALNGKKFDDREWYVGKAQKKSE 109 (472)
Q Consensus 82 A~~Av~~lng~~i~g~~l~V~~a~~~~~ 109 (472)
+.+++. ..-+.|+++.+.|.+|.++..
T Consensus 152 Vdkv~~-~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cceecc-cceeeecCceeeEeeccchhh
Confidence 999997 478889999999999988764
No 115
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.96 E-value=1.1e-09 Score=100.11 Aligned_cols=81 Identities=35% Similarity=0.571 Sum_probs=74.7
Q ss_pred eeeeecCCCCccHHHHHH----HHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 133 NLYIKNLGDSIDDEKLKE----LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~----~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
+|||.||.+.+..++|++ +|+.||.|.+|...+. .+.||-|||.|++.+.|..|+..|+|..+.||++++.||.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 899999999999999998 9999999999988764 6789999999999999999999999999999999999999
Q ss_pred cHHHHHH
Q 012034 209 RKEERRA 215 (472)
Q Consensus 209 ~k~~~~~ 215 (472)
.+..-..
T Consensus 89 s~sdii~ 95 (221)
T KOG4206|consen 89 SDSDIIA 95 (221)
T ss_pred Cccchhh
Confidence 8865443
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.5e-10 Score=106.35 Aligned_cols=84 Identities=37% Similarity=0.526 Sum_probs=79.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...+-|||-.|..-+|+++|.-+|+.||.|.+|.|++| ++|.+..||||+|++.+++++|.-+|++..|+.++|-|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 56788999999999999999999999999999999999 79999999999999999999999999999999999999998
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
++-+.
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76544
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=4.8e-11 Score=126.24 Aligned_cols=149 Identities=25% Similarity=0.324 Sum_probs=126.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEE-ECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~-~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
+...++||+||+..+.+++|...|+.+|.+..+.+. ...+++-||+|||.|.+.+++.+||.- +...+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhhh-------
Confidence 345679999999999999999999999988887776 235678899999999999999999974 44444431
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~ 184 (472)
..++|.|.|...|+++|+.+|+.+|.+++..++..++|+.+|.+||.|.+..+
T Consensus 737 ---------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 737 ---------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred ---------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 15899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEecCeeEEEEEccc
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
+.+++....+..+..+.+.|.+...
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhcccchhhhhhhcCccccccCC
Confidence 9999988887777666666665443
No 118
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.5e-09 Score=95.62 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=68.8
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.+.|||+|||.++-+.+|.++|.+||.|.+|.+.... ....||||+|++..+|..||..-+|..++|..|+|+++..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 4689999999999999999999999999999875431 2467999999999999999999999999999999998653
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.91 E-value=2.8e-09 Score=95.89 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=74.9
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcC-CCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEY-GTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~f-G~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....-+||..+|.-+.+.++..+|.+| |.++.+++.++ +||+|||||||+|++.|.|.-|-+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 456779999999999999999999998 78888888666 7999999999999999999999999999999999999988
Q ss_pred cccc
Q 012034 104 AQKK 107 (472)
Q Consensus 104 a~~~ 107 (472)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7655
No 120
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.91 E-value=2.6e-09 Score=98.71 Aligned_cols=90 Identities=28% Similarity=0.464 Sum_probs=78.6
Q ss_pred hhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC
Q 012034 18 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 96 (472)
Q Consensus 18 ~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g 96 (472)
+-..........+||.+.|..+++++-|-..|++|-.....++++| ++|+++||+||.|.+..|+.+|+++|+|+.++.
T Consensus 180 dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 180 DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred CcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 3333334567788999999999999999999999999999999999 699999999999999999999999999999999
Q ss_pred cceeeeccccc
Q 012034 97 REWYVGKAQKK 107 (472)
Q Consensus 97 ~~l~V~~a~~~ 107 (472)
+.|.+..+.-+
T Consensus 260 rpiklRkS~wk 270 (290)
T KOG0226|consen 260 RPIKLRKSEWK 270 (290)
T ss_pred chhHhhhhhHH
Confidence 99877655433
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.87 E-value=1.3e-09 Score=106.27 Aligned_cols=175 Identities=23% Similarity=0.240 Sum_probs=136.2
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..+++|++++.+++.+.++..+|.+.|....+..... ....++|+++|.|...+.+..|+.....+.+.++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 5889999999999999999999999998777666664 567899999999999999999998543345555555443333
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceee-eecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLY-IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~ 183 (472)
....+.. ............++| |++++..+++++|+.+|..+|.|..+++..++ .+.++||++|+|.+..
T Consensus 167 ~~~~~~~--------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRPK--------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccccc--------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 2221000 000111222233555 99999999999999999999999999998875 7899999999999999
Q ss_pred HHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 184 EASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 184 ~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
++..++.. ....+.+.++.+......
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999987 888999999999877655
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.7e-09 Score=115.06 Aligned_cols=161 Identities=21% Similarity=0.302 Sum_probs=136.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++||++||+..+++.+|+..|..||.|.+|.|....-+..--||||.|.+-..+-.|..++.+..|....+.+...
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45688999999999999999999999999999999887755555569999999999999999999998887776666665
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~ 184 (472)
+.+.. ..+.++|++|..|+....|...|..||.|..|.+-.. .-|++|.|++...
T Consensus 449 ~~kst--------------------~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~ 503 (975)
T KOG0112|consen 449 QPKST--------------------PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPA 503 (975)
T ss_pred ccccc--------------------cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCcc
Confidence 43221 2346999999999999999999999999999877543 4599999999999
Q ss_pred HHHHHHHhCCcEecC--eeEEEEEcccH
Q 012034 185 ASRALAEMNGKMIVS--KPLYVAVAQRK 210 (472)
Q Consensus 185 A~~Ai~~l~g~~i~g--k~l~V~~a~~k 210 (472)
|..|+..|.|..|++ +.+.|.|+..-
T Consensus 504 aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 504 AQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred chhhHHHHhcCcCCCCCcccccccccCC
Confidence 999999999999975 56777776554
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=5.7e-09 Score=105.70 Aligned_cols=81 Identities=31% Similarity=0.565 Sum_probs=74.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...+||||.+|...+.-.+|+.+|++||.|.-.+|+.+ .+--.++||||++.+.++|.+||+.|+.+.|.|+.|.|+++
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45789999999999999999999999999999999988 45556899999999999999999999999999999999987
Q ss_pred cc
Q 012034 105 QK 106 (472)
Q Consensus 105 ~~ 106 (472)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.82 E-value=1.2e-08 Score=96.34 Aligned_cols=83 Identities=33% Similarity=0.452 Sum_probs=77.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
+...++|+|.|||..+++++|+++|+.||.++.+.+.+|++|.+.|.|=|.|+..+||.+||+.+++..++|+.+.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=7.3e-09 Score=99.74 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=69.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH-CCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l-ng~~i~g~~l~V~~ 103 (472)
++.-++|||++|-..++|.+|++.|.+||+|.++.+... +++|||+|.+.++|+.|.++. |...|+|.+|.|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 467899999999999999999999999999999999876 679999999999999999764 55568999999999
Q ss_pred ccc
Q 012034 104 AQK 106 (472)
Q Consensus 104 a~~ 106 (472)
+..
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 877
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.3e-08 Score=98.02 Aligned_cols=83 Identities=30% Similarity=0.490 Sum_probs=77.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
....|||--|..-++++||.-+|+.||.|.+|.|++|. +|.|..||||+|++.+++.+|.-.|.+..|+++.|+|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 34579999999999999999999999999999999995 89999999999999999999999999999999999999988
Q ss_pred cHHH
Q 012034 209 RKEE 212 (472)
Q Consensus 209 ~k~~ 212 (472)
+-..
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 7654
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.75 E-value=5.7e-08 Score=78.82 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=66.8
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcC--CCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccC----Ccceee
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD----DREWYV 101 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~f--G~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~----g~~l~V 101 (472)
|||.|+|||...|.++|.+++... |...-+.+..| .++.+.|||||+|.++++|.+..+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999999764 67777888888 68889999999999999999999999998875 345666
Q ss_pred ecccc
Q 012034 102 GKAQK 106 (472)
Q Consensus 102 ~~a~~ 106 (472)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66643
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=4.5e-08 Score=94.37 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=69.4
Q ss_pred ccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh-CCcEecCeeEEE
Q 012034 126 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 204 (472)
Q Consensus 126 ~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l-~g~~i~gk~l~V 204 (472)
.+...-.+|||++|.+.+++.+|+++|.+||.|.++.++.. +++|||+|.+.++|+.|.++. +...|+|.+|.|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34445568999999999999999999999999999999876 679999999999999998764 555679999999
Q ss_pred EEccc
Q 012034 205 AVAQR 209 (472)
Q Consensus 205 ~~a~~ 209 (472)
.|...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.69 E-value=4.2e-08 Score=88.44 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=72.2
Q ss_pred ceeeeecCCCCccHHHHHHHHhcc-CceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEF-GTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~-G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..+||..++..+.+.++..+|.+| |.|+.+++-++ ++|.|+|||||+|++.+.|.-|-+.||+..+.++-|.|.+-..
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 468999999999999999999998 77888888676 4899999999999999999999999999999999999998766
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 5
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.5e-08 Score=101.67 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=115.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|+|-|||..+++++|+++|+.||+|..|..- -..+|..||+|.|..+|++|+++|++.+|.|+.|.....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 4678999999999999999999999999999985533 345789999999999999999999999999999883222
Q ss_pred ccchhHH---HHHHHHHHhhhhhhccccc-cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcC
Q 012034 105 QKKSERE---QELKGQFEQAMKETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180 (472)
Q Consensus 105 ~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~ 180 (472)
.....-- ..+-..+..........-. ...+ ++.|+...+..-++.+|+.+|.+.. +- ++.-+..-|+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRFVEFA 221 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc----ccchhhhhhhhhc
Confidence 1111100 0111111111111111000 1123 3338888888888888888887765 32 1222225678888
Q ss_pred CHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 181 TPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 181 s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
+..++..+...+ |..+.++....++...
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEecCC
Confidence 888886666544 6667777666666554
No 131
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.61 E-value=5.6e-08 Score=98.87 Aligned_cols=80 Identities=33% Similarity=0.565 Sum_probs=68.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++++++|+++|..||.|+...|.... .+++.+||||+|++.++++.||++ +-..|++++|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 345569999999999999999999999999998887753 455559999999999999999987 577789999999865
Q ss_pred cc
Q 012034 105 QK 106 (472)
Q Consensus 105 ~~ 106 (472)
..
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 43
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.60 E-value=8.1e-08 Score=97.54 Aligned_cols=80 Identities=28% Similarity=0.485 Sum_probs=71.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+.||||.+|...+-..||+.+|++||.|+-.+|+++. +--.++|+||++.+.++|.+||+.||..+++|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35689999999999999999999999999999998873 33358999999999999999999999999999999998764
Q ss_pred c
Q 012034 209 R 209 (472)
Q Consensus 209 ~ 209 (472)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 133
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=2.8e-07 Score=89.79 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=117.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
.+..+-|..++|||..++.+|..+|.-.-...--..++. ..|+.-|+|.|.|.|.|.-..|++. +.+.+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 466777889999999999999999986543333233332 4577788999999999999999986 67778888888877
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhcc----CceEEEEEeeCCCCCcccEEEEEc
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF----GTITSCKVMRDPSGISKGSGFVAF 179 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~----G~I~~v~i~~~~~g~s~g~afV~f 179 (472)
+....--... .-..........+..-.-+.+++||+++++.|+.++|... |..+.+-+++..+|+..|-|||.|
T Consensus 136 a~ge~f~~ia--gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIA--GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEec--CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 6543211000 0000000111122223457789999999999999999632 355667777777999999999999
Q ss_pred CCHHHHHHHHHHh
Q 012034 180 STPEEASRALAEM 192 (472)
Q Consensus 180 ~s~~~A~~Ai~~l 192 (472)
..+++|..|+.+-
T Consensus 214 a~ee~aq~aL~kh 226 (508)
T KOG1365|consen 214 ACEEDAQFALRKH 226 (508)
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999643
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=2.3e-07 Score=87.58 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=75.0
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
.+.|+|.||+..|+++||+++|..||.++.+.|..++.|.|.|.|-|.|...++|..|++.+||..++|+.+.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999988876544
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.48 E-value=3.3e-07 Score=88.42 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=73.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEE--------EEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~--------v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~ 201 (472)
.+++|||.|||.++|.+++.++|+++|.|.. |++.++++|.-+|-|+|+|.-.++..-|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4567999999999999999999999998854 78999999999999999999999999999999999999999
Q ss_pred EEEEEcc
Q 012034 202 LYVAVAQ 208 (472)
Q Consensus 202 l~V~~a~ 208 (472)
|+|..|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999764
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=2.6e-07 Score=96.31 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=74.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCC----CCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD----GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~----g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
+-..|||||+||+..++++.|...|..||+|.+++|++..+ .+.+-||||.|-+..||.+|++.|+|..+.+..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 35689999999999999999999999999999999999743 45577999999999999999999999999999999
Q ss_pred eecccc
Q 012034 101 VGKAQK 106 (472)
Q Consensus 101 V~~a~~ 106 (472)
+.|+..
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999853
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.43 E-value=6.7e-07 Score=93.08 Aligned_cols=73 Identities=26% Similarity=0.469 Sum_probs=66.5
Q ss_pred eeeecCCCCccHHHHHHHHhccCce-EEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G~I-~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
|-+.|+|++++-+||.++|..|-.+ .+|.+.++.+|...|-|.|.|++.++|..|...++++.|..+.|++.+
T Consensus 870 ~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 870 LSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 7899999999999999999999755 456777777899999999999999999999999999999999998875
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.33 E-value=1.1e-07 Score=93.64 Aligned_cols=153 Identities=24% Similarity=0.420 Sum_probs=119.6
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcC--CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc-cCCcceeeeccc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDREWYVGKAQ 105 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~f--G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~-i~g~~l~V~~a~ 105 (472)
+.+|++||...++-.+|+.+|... +--..+ +++ .||+||.+.+...|.+|++.++|+. +.|+++.|..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 569999999999999999999864 221222 222 4799999999999999999999876 788898888765
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A 185 (472)
.+..+. ..+-|.|++.....+.|..+...||.++.|........ .-..-|+|.+.+.+
T Consensus 75 ~kkqrs--------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~ 132 (584)
T KOG2193|consen 75 PKKQRS--------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQH 132 (584)
T ss_pred hHHHHh--------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHH
Confidence 544332 24778899999999999999999999999976332111 11234688999999
Q ss_pred HHHHHHhCCcEecCeeEEEEEcccH
Q 012034 186 SRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 186 ~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
..||..++|..+....+.|.|-...
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchh
Confidence 9999999999998888888875543
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=3.3e-06 Score=68.53 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=67.8
Q ss_pred ceeeeecCCCCccHHHHHHHHhcc--CceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEec----CeeEEE
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV----SKPLYV 204 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~--G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~----gk~l~V 204 (472)
++|-|+|||...|.++|.+++... |....+.+.-|- ++.+.|||||.|.+++.|.+..+.++|+.+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998754 677777777774 6778999999999999999999999999874 677788
Q ss_pred EEcccH
Q 012034 205 AVAQRK 210 (472)
Q Consensus 205 ~~a~~k 210 (472)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 140
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.31 E-value=2e-05 Score=76.18 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=71.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCC--CeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
+-+..++||+||-|.+|+++|.+.+...| .|.++++..+ .+|.|||||.|...+..+.++.++-|-.+.|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34566799999999999999999998877 5777777777 57999999999999999999999999999999988777
Q ss_pred eccccch
Q 012034 102 GKAQKKS 108 (472)
Q Consensus 102 ~~a~~~~ 108 (472)
...++..
T Consensus 157 ~~~NK~~ 163 (498)
T KOG4849|consen 157 LSYNKTN 163 (498)
T ss_pred eccchhh
Confidence 6665443
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.30 E-value=1e-06 Score=83.46 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=74.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+...+.+||+|+...+|.+++...|+.||.|..+.+.+|. .|.+|||+||+|.+.+.+..++. |++..|.++.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4678899999999999999999999999999999999995 56799999999999999999998 999999999999887
Q ss_pred ccc
Q 012034 104 AQK 106 (472)
Q Consensus 104 a~~ 106 (472)
...
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 643
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.22 E-value=4.6e-06 Score=64.67 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=49.3
Q ss_pred cceEEeCCCCCCCCHHHHH----HHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 28 FNNVFVKNLDESTTDEDLK----KIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~----~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
++.|||.|||.+.+-..|+ .++..+| .|.+|. .+-|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5679999999999876555 5666775 666652 3689999999999999999999999999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 985443
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=7.7e-07 Score=80.83 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=72.3
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
.+|||.|+...++++-|.++|-..|.|..+.|..+.+++.+ ||||.|.++.+..-|++.+||..+.+..+.+++-...
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 48999999999999999999999999999999999888888 9999999999999999999999999999988875443
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.16 E-value=3.2e-06 Score=86.22 Aligned_cols=77 Identities=26% Similarity=0.425 Sum_probs=66.1
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...|||+|||.+++.++|+++|..||.|+...|.... .+++.+||||+|.+.+++..||.+- -..+++++|.|+-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 4569999999999999999999999999998886643 4555699999999999999999765 667899999998543
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.15 E-value=3.2e-06 Score=80.03 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=73.6
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
......+||+|++..+|.+++..+|+.||.|..+.|..|. .+.++||+||.|.+.+.+.+++. |++..|.++.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3445689999999999999999999999999999998887 55799999999999999999997 999999999999997
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 5543
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.08 E-value=5.7e-06 Score=86.60 Aligned_cols=80 Identities=33% Similarity=0.543 Sum_probs=71.6
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC----CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~----~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..+||||+||+..++++.|...|..||.|.+++|+-.+ ....+-|+||.|-+..+|.+|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 34789999999999999999999999999999997653 34557799999999999999999999999999999998
Q ss_pred Eccc
Q 012034 206 VAQR 209 (472)
Q Consensus 206 ~a~~ 209 (472)
|.+.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 8753
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.08 E-value=4e-06 Score=87.48 Aligned_cols=180 Identities=14% Similarity=0.041 Sum_probs=128.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCc-eeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~s-kG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...+-+-+++.+.+.++.+++++|--. .|.++.|..+.-+.+ .|-++|.|....++.+|++. |...+-.|.+.|...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 345567788999999999999998643 345566666643333 78999999999999999975 555666666666544
Q ss_pred ccchhHHHHHHHHH---------------------HhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEE-EE
Q 012034 105 QKKSEREQELKGQF---------------------EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CK 162 (472)
Q Consensus 105 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~-v~ 162 (472)
-.....-..-...+ ............+.+|||..||..+++.++.+.|..--.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 22111000000000 000011122334568999999999999999999998777776 77
Q ss_pred EeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 163 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 163 i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
|.+.++++.++.|||.|..++++.+|...-+.+.++.+.|+|.-.
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 777788999999999999999999999888888888888888744
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=2.3e-06 Score=87.67 Aligned_cols=69 Identities=28% Similarity=0.442 Sum_probs=62.9
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEE
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 203 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~ 203 (472)
..+|+|.|||..|++++|+++|+.||+|..|+.-.. .+|.+||+|-|..+|+.|+++|++.++.|+.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 457999999999999999999999999999765443 578999999999999999999999999999887
No 149
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=3.9e-06 Score=77.72 Aligned_cols=71 Identities=28% Similarity=0.560 Sum_probs=64.9
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
.+||++|++.+.+.+|.++|..||.|..+.+. .||+||.|.+..+|..|+..+|++++.+..+.|.++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 58999999999999999999999999998875 469999999999999999999999999998888876644
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=1.8e-05 Score=61.49 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=48.4
Q ss_pred ceeeeecCCCCccHH----HHHHHHhccC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 132 LNLYIKNLGDSIDDE----KLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e----~L~~~F~~~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
+.|||.|||.+.+.. .|+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|.+|.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 369999999988764 5667777886 565553 45799999999999999999999999999999998
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8543
No 151
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.04 E-value=1.4e-05 Score=73.05 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=69.2
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEee-CC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEec---CeeEEEEE
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR-DP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 206 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~-~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~---gk~l~V~~ 206 (472)
++|||.+||.++...+|..+|..|-..+.+.+-. ++ +...+-+|||+|.+..+|..|...|||..|+ +..|++.+
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 5899999999999999999999997777665533 22 2245679999999999999999999999985 78999999
Q ss_pred cccHHHHH
Q 012034 207 AQRKEERR 214 (472)
Q Consensus 207 a~~k~~~~ 214 (472)
++....++
T Consensus 115 AKSNtK~k 122 (284)
T KOG1457|consen 115 AKSNTKRK 122 (284)
T ss_pred hhcCcccc
Confidence 98775543
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=2.7e-05 Score=64.65 Aligned_cols=78 Identities=33% Similarity=0.546 Sum_probs=49.4
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC-----cEecCeeEEEE
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-----KMIVSKPLYVA 205 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g-----~~i~gk~l~V~ 205 (472)
|+.|+|.++...++.++|++.|+.||.|..|.+.+. -..|+|.|.+.++|.+|+..+.. ..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 457899999999999999999999999999998765 33799999999999999987643 36778888888
Q ss_pred EcccHHHH
Q 012034 206 VAQRKEER 213 (472)
Q Consensus 206 ~a~~k~~~ 213 (472)
+-...++.
T Consensus 76 vLeGeeE~ 83 (105)
T PF08777_consen 76 VLEGEEEE 83 (105)
T ss_dssp ---HHHHH
T ss_pred ECCCHHHH
Confidence 77666544
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.70 E-value=3.5e-05 Score=75.37 Aligned_cols=84 Identities=24% Similarity=0.342 Sum_probs=74.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCee--------EEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTIT--------SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 96 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~--------~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g 96 (472)
....+|||-+|+..+++++|.++|..+|.|. .|+|.+| +|++.||-|.|.|++..+|+.||.-++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4567899999999999999999999999875 3666667 689999999999999999999999999999999
Q ss_pred cceeeeccccchh
Q 012034 97 REWYVGKAQKKSE 109 (472)
Q Consensus 97 ~~l~V~~a~~~~~ 109 (472)
..|.|..+..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999988876654
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.67 E-value=1.8e-05 Score=77.66 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=114.7
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC----CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG----DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~----~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
..-|-|.||..++|.+++..+|.-.|+|.++.++... -....-.|||.|.|..++..|-. |.++.+-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3469999999999999999999999999999998752 13345689999999999998886 777887788777765
Q ss_pred cccchhHHHH-H---HHH--------------------------------------HHhhhhhhccccccceeeeecCCC
Q 012034 104 AQKKSEREQE-L---KGQ--------------------------------------FEQAMKETVDKFQGLNLYIKNLGD 141 (472)
Q Consensus 104 a~~~~~~~~~-~---~~~--------------------------------------~~~~~~~~~~~~~~~~l~V~nL~~ 141 (472)
.-........ + ... +..... +.+ ..+++|.+|..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kl---eei-rRt~~v~sl~~ 161 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKL---EEI-RRTREVQSLIS 161 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhh---HHH-Hhhhhhhcchh
Confidence 4332221111 0 000 000000 000 13689999999
Q ss_pred CccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec
Q 012034 142 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198 (472)
Q Consensus 142 ~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~ 198 (472)
.+...++.+.|..+|.|....+-... ..-+|-|.|........|+ .++|..+.
T Consensus 162 ~~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 162 AAILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 99999999999999998887765432 2346778888877777777 56666554
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=9.2e-05 Score=69.18 Aligned_cols=89 Identities=26% Similarity=0.346 Sum_probs=79.2
Q ss_pred HHHHHHHHCCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEE
Q 012034 82 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 161 (472)
Q Consensus 82 A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v 161 (472)
|..|-.+|++....++.|.|.++..+ .|||.||...++.|.|.+.|+.||.|+..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 55566678899999999999999762 49999999999999999999999999999
Q ss_pred EEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCc
Q 012034 162 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 195 (472)
Q Consensus 162 ~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~ 195 (472)
.+..|..++..+-++|.|...-.|.+|...++-.
T Consensus 62 v~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 62 VAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred eeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 9988888999999999999999999999877543
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=3.8e-05 Score=78.67 Aligned_cols=77 Identities=31% Similarity=0.439 Sum_probs=62.2
Q ss_pred CCcceEEeCCCCCCCC--HHH----HHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc-c
Q 012034 26 TKFNNVFVKNLDESTT--DED----LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR-E 98 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~t--ee~----L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~-~ 98 (472)
--.+.|+|.|+|.--. -+. |..+|+++|+|..+.+..++.|.++||.|++|.+..+|+.||++|||+.|+-+ .
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3467799999984322 223 44689999999999999888888999999999999999999999999998755 4
Q ss_pred eeee
Q 012034 99 WYVG 102 (472)
Q Consensus 99 l~V~ 102 (472)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 4443
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=5.2e-06 Score=88.76 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=118.0
Q ss_pred ceEEeCCCCCCCCHH-HHHHHHhcCCCeeEEEEEECCC-CCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 29 NNVFVKNLDESTTDE-DLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 29 ~~l~V~nLp~~~tee-~L~~~F~~fG~I~~v~i~~d~~-g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
...++.++.....+. ..+..|..+|.|+.|.+-.... -.+..++++.++.+.+++.|.. ..+..+.++.+.|..+.+
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCc
Confidence 345566665555444 6788999999999998877422 2223389999999999999986 578889999998888876
Q ss_pred chhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEe-eCCCCCcccEEEEEcCCHHHH
Q 012034 107 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM-RDPSGISKGSGFVAFSTPEEA 185 (472)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~-~~~~g~s~g~afV~f~s~~~A 185 (472)
+....... ....+.-..+++||+||+..+.+++|...|+.+|.+..+.+. ....++-+|+|+|.|.+.+++
T Consensus 651 ~~~~~~~k--------vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~ 722 (881)
T KOG0128|consen 651 EEKEENFK--------VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHA 722 (881)
T ss_pred hhhhhccC--------cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCch
Confidence 65221110 000111123478999999999999999999999998887664 334678899999999999999
Q ss_pred HHHHHHhCCcEec
Q 012034 186 SRALAEMNGKMIV 198 (472)
Q Consensus 186 ~~Ai~~l~g~~i~ 198 (472)
.+||....+..++
T Consensus 723 ~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 723 GAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhhh
Confidence 9999655554444
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.59 E-value=0.00012 Score=70.64 Aligned_cols=80 Identities=25% Similarity=0.490 Sum_probs=63.5
Q ss_pred cceEEeCCCCCCCCHHH----H--HHHHhcCCCeeEEEEEECC-C-CCceeEE--EEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 28 FNNVFVKNLDESTTDED----L--KKIFGEYGTITSAVVMRDG-D-GKSKCFG--FVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~----L--~~~F~~fG~I~~v~i~~d~-~-g~skG~a--FV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
.+-+||-+|+..+-+|+ | .++|.+||.|..|.|-+.. . ....+.+ ||+|.+.|||.+||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45578999998777766 3 3799999999999887653 1 1222334 9999999999999999999999999
Q ss_pred ceeeeccccc
Q 012034 98 EWYVGKAQKK 107 (472)
Q Consensus 98 ~l~V~~a~~~ 107 (472)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999887544
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.59 E-value=0.00026 Score=58.79 Aligned_cols=71 Identities=27% Similarity=0.413 Sum_probs=43.5
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCC-----ccCCcceeeec
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK-----KFDDREWYVGK 103 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~-----~i~g~~l~V~~ 103 (472)
+.|+|.++...++-++|++.|+.||.|.-|.+.... .-|||-|.+.++|+.|++++... .|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 358899999999999999999999998877776542 27899999999999999987544 45555555544
Q ss_pred c
Q 012034 104 A 104 (472)
Q Consensus 104 a 104 (472)
-
T Consensus 77 L 77 (105)
T PF08777_consen 77 L 77 (105)
T ss_dssp -
T ss_pred C
Confidence 3
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.54 E-value=7.1e-05 Score=73.23 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=72.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEE--------EEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~--------v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk 200 (472)
...+|||.+|++.+++++|.++|..+|.|.. |.|.++. ++.+||-|.|.|.|...|+.||..++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4458999999999999999999999998853 4555553 788999999999999999999999999999999
Q ss_pred eEEEEEcccHHH
Q 012034 201 PLYVAVAQRKEE 212 (472)
Q Consensus 201 ~l~V~~a~~k~~ 212 (472)
.|.|.+++.+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999998887753
No 161
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=0.0008 Score=71.70 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=4.8
Q ss_pred HHHHhhhhhhhh
Q 012034 390 QRTLLGESLYPL 401 (472)
Q Consensus 390 q~~~~g~~l~~~ 401 (472)
+|...|-.+=..
T Consensus 673 ~k~~e~~eekkt 684 (1102)
T KOG1924|consen 673 KKEQEGGEEKKT 684 (1102)
T ss_pred cccccccccccc
Confidence 444444333333
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.42 E-value=9.5e-05 Score=72.41 Aligned_cols=82 Identities=28% Similarity=0.397 Sum_probs=72.3
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..+-.+|++|+.++++++|+..|..+|.|+.+.+..+ .++.++|||||.|.+..++..++.. ....+.++.+.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 3444459999999999999999999999999999888 5899999999999999999999987 7888999999998876
Q ss_pred cchh
Q 012034 106 KKSE 109 (472)
Q Consensus 106 ~~~~ 109 (472)
....
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 5543
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.30 E-value=0.00017 Score=71.90 Aligned_cols=96 Identities=27% Similarity=0.272 Sum_probs=69.4
Q ss_pred eeEEEcCcccchhhhh---hhc--cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC---C-C--CC-------
Q 012034 6 KQVFVGHFLRKQERET---VAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD---G-D--GK------- 67 (472)
Q Consensus 6 k~v~v~~~~~~~~r~~---~~~--~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d---~-~--g~------- 67 (472)
.+++|...-++-.|.. ... +-..++|.+.|||.+-.-+.|.++|+.||.|.+|+|... . + +.
T Consensus 204 ~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~ 283 (484)
T KOG1855|consen 204 SKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFEL 283 (484)
T ss_pred ceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhh
Confidence 3566554444443322 222 247899999999999999999999999999999999876 1 1 21
Q ss_pred -ceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 68 -SKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 68 -skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
.+-||||+|++.+.|.+|.+.|+.....-..|.|
T Consensus 284 ~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkv 318 (484)
T KOG1855|consen 284 QTKECALVEYEEVEAARKARELLNPEQNWRMGLKV 318 (484)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchh
Confidence 2568999999999999999987655443333433
No 164
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00017 Score=79.34 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=60.9
Q ss_pred HHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHH--HHHHHHHHhh
Q 012034 389 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM--EVLRSVAQQQ 453 (472)
Q Consensus 389 ~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~--~~l~~~~~~~ 453 (472)
--+|-|||+||+.++.+.|..|.||||||||.....+|..|..++.|+..|++|+ +++..|-++.
T Consensus 2606 Ae~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qei 2672 (3015)
T KOG0943|consen 2606 AERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQEI 2672 (3015)
T ss_pred hhhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999999999999 8999887654
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.21 E-value=0.00027 Score=66.06 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=62.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-C--------CCcee----EEEEEeCCHHHHHHHHHHHCCCc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-D--------GKSKC----FGFVNFENADDAAKAVEALNGKK 93 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~--------g~skG----~aFV~F~~~e~A~~Av~~lng~~ 93 (472)
+.--||+++||+.++-..|+++|+.||.|-.|++.... . |.+++ -|+|+|.+...|+++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56779999999999999999999999999999998763 2 23333 35699999999999999999999
Q ss_pred cCCcc
Q 012034 94 FDDRE 98 (472)
Q Consensus 94 i~g~~ 98 (472)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.21 E-value=0.00079 Score=65.16 Aligned_cols=81 Identities=27% Similarity=0.468 Sum_probs=63.7
Q ss_pred ccceeeeecCCCCccHHH----H--HHHHhccCceEEEEEeeCC-CC--C-cccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 130 QGLNLYIKNLGDSIDDEK----L--KELFSEFGTITSCKVMRDP-SG--I-SKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~----L--~~~F~~~G~I~~v~i~~~~-~g--~-s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
+..-+||-+|+..+-+|+ | .++|.+||.|..|.|-+.. .. . +.--.+|+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 334589999998887776 2 3799999999999886653 11 1 11223999999999999999999999999
Q ss_pred eeEEEEEcccH
Q 012034 200 KPLYVAVAQRK 210 (472)
Q Consensus 200 k~l~V~~a~~k 210 (472)
+.|+..|...|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999987554
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.14 E-value=0.00079 Score=48.48 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=41.5
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHH
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 86 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av 86 (472)
+.|-|.+++.+..+ ++.+.|..||+|..+.+-. .+-+.||+|++..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 56889999877665 4555899999999877652 2449999999999999985
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.00 E-value=0.00041 Score=65.08 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=53.4
Q ss_pred HHHHHHHh-cCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 43 EDLKKIFG-EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 43 e~L~~~F~-~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
++|...|+ +||+|++++|..+-.-.-+|-+||.|...|+|.+|++.||+..+.|+.|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44445556 89999999887765445678999999999999999999999999999998887643
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0013 Score=67.83 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=62.2
Q ss_pred cceeeeecCCCCc------cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec-CeeEE
Q 012034 131 GLNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLY 203 (472)
Q Consensus 131 ~~~l~V~nL~~~~------t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~-gk~l~ 203 (472)
.+.++|.|+|--- -...|.++|+++|.|....+..++.|.++||.|++|.+..+|..|++.+||+.++ .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 3578899988421 2245668999999999999998888889999999999999999999999999986 45555
Q ss_pred EEE
Q 012034 204 VAV 206 (472)
Q Consensus 204 V~~ 206 (472)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 553
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.93 E-value=0.00041 Score=65.06 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=56.9
Q ss_pred HHHHHHHh-ccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHHH
Q 012034 146 EKLKELFS-EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 213 (472)
Q Consensus 146 e~L~~~F~-~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~ 213 (472)
++|...|+ +||.|+++.|-.+-.-.-+|-++|.|...++|.+|++.||+..+.|++|+..+..-..-+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 56666666 899999998876654566889999999999999999999999999999999987654433
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.79 E-value=0.0044 Score=59.11 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCceEEEEEeeCCCC--CcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHHHH
Q 012034 145 DEKLKELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214 (472)
Q Consensus 145 ~e~L~~~F~~~G~I~~v~i~~~~~g--~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~ 214 (472)
++++.+.+++||.|..|.|+..++. .----.||+|+..++|.+|+-.|||+.|+|+.+...|..-.+-+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhh
Confidence 4678899999999999999887521 112247999999999999999999999999999988876654443
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.73 E-value=0.0039 Score=51.04 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=51.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEE-EEEC-------CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV-VMRD-------GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 98 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~-i~~d-------~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~ 98 (472)
..+-|.|-++|.. ....|.+.|++||+|.+.. +.++ .......+-.|.|.++.+|.+||.+ ||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3556999999987 5667888999999998775 1111 0011245899999999999999985 999998875
Q ss_pred ee-eecc
Q 012034 99 WY-VGKA 104 (472)
Q Consensus 99 l~-V~~a 104 (472)
+. |.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 54 4444
No 173
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.0085 Score=64.22 Aligned_cols=10 Identities=20% Similarity=0.704 Sum_probs=4.4
Q ss_pred hhHhhcCCCh
Q 012034 413 VTGMLLEMDQ 422 (472)
Q Consensus 413 itgmll~~~~ 422 (472)
|--|+||.|.
T Consensus 718 ik~~ILevne 727 (1102)
T KOG1924|consen 718 IKNVILEVNE 727 (1102)
T ss_pred HHHHHhhccH
Confidence 3344455443
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.68 E-value=0.0012 Score=65.91 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=56.7
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC---C---CCCc--------ccEEEEEcCCHHHHHHHHHHhCC
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD---P---SGIS--------KGSGFVAFSTPEEASRALAEMNG 194 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~---~---~g~s--------~g~afV~f~s~~~A~~Ai~~l~g 194 (472)
.++.+|.+-|||.+-.-+.|.++|+.+|.|..|+|..- + .+.+ +-+|||+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46678999999999888999999999999999999765 1 2222 45799999999999999988865
Q ss_pred cE
Q 012034 195 KM 196 (472)
Q Consensus 195 ~~ 196 (472)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 175
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.64 E-value=0.0046 Score=44.46 Aligned_cols=51 Identities=20% Similarity=0.370 Sum_probs=40.1
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 189 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai 189 (472)
.|-|.+.+.+.. +.+++.|..||.|+.+.+... .-+.+|+|.+..+|.+|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 466777776555 456669999999999888632 458999999999999985
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.54 E-value=0.0063 Score=58.05 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCeeEEEEEECCCC--CceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 43 EDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 43 e~L~~~F~~fG~I~~v~i~~d~~g--~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
+++++.+++||.|..|.|..+.+- ...---||+|+..++|.+|+-.|||..|+|+.+..++.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 578889999999999999887421 112247999999999999999999999999998887764
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0026 Score=59.66 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=60.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~ 93 (472)
..|||.||..-++.|.|.+.|+.||+|...+++.|..++..+-++|.|...-.|.+|...++..-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCc
Confidence 67999999999999999999999999999999999889999999999999999999999875443
No 178
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.34 E-value=0.0022 Score=60.19 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=59.5
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCC---------CCccc----EEEEEcCCHHHHHHHHHHhCCcEec
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------GISKG----SGFVAFSTPEEASRALAEMNGKMIV 198 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~---------g~s~g----~afV~f~s~~~A~~Ai~~l~g~~i~ 198 (472)
-.||+++||...+...||++|+.||.|-.|.+-.... |.++. -|+|+|.+...|..+...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 3699999999999999999999999999988865431 22222 3789999999999999999999999
Q ss_pred CeeE
Q 012034 199 SKPL 202 (472)
Q Consensus 199 gk~l 202 (472)
|++-
T Consensus 155 gkk~ 158 (278)
T KOG3152|consen 155 GKKK 158 (278)
T ss_pred CCCC
Confidence 8643
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.32 E-value=0.022 Score=46.71 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=49.2
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEE-EeeCC-------CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeE-
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDP-------SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL- 202 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~-i~~~~-------~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l- 202 (472)
+-|.|-+.|.. ....+.+.|++||+|.+.. +.++. .-.......|+|++..+|.+|+ .-||..+.|..+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 45778888877 5567788999999998875 22210 0112457889999999999999 789999988644
Q ss_pred EEEEc
Q 012034 203 YVAVA 207 (472)
Q Consensus 203 ~V~~a 207 (472)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45555
No 180
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.021 Score=58.77 Aligned_cols=63 Identities=29% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHh-cCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHH
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFG-EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~-~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~ 88 (472)
+..+||||++||.-++-++|-.+|+ -||-|.-+-|=.| +-+=.||-|-|+|++..+-.+||++
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 6788999999999999999999999 7999999999888 4466889999999999999999985
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.87 E-value=0.026 Score=44.07 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=40.8
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHC
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ln 90 (472)
..-.+|. +|++|...||.++|+.||.|. |..+.| .-|||...+.+.|..++..++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 3334455 999999999999999999986 444444 269999999999999998875
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.79 E-value=0.014 Score=58.43 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=64.4
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCc-EecCeeEEEEEcccHH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK-MIVSKPLYVAVAQRKE 211 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~-~i~gk~l~V~~a~~k~ 211 (472)
.+|++||...++.+||+.+|...-.-.+-.++. ..||+||.+.+..-|.+|++.++|+ ++.|+++.|...-.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 589999999999999999998752111112222 2679999999999999999999997 5889999999888887
Q ss_pred HHHHHHH
Q 012034 212 ERRARLQ 218 (472)
Q Consensus 212 ~~~~~~~ 218 (472)
.+..+.+
T Consensus 78 qrsrk~Q 84 (584)
T KOG2193|consen 78 QRSRKIQ 84 (584)
T ss_pred HHhhhhh
Confidence 7665543
No 183
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.75 E-value=0.00058 Score=71.76 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=63.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
..-.+|||+|+-..+..+-++.+...+|.|.++.... |||+.|..+....+|+..++...++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4567899999999999999999999999998876543 9999999999999999999999999988877653
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.71 E-value=0.052 Score=47.29 Aligned_cols=56 Identities=20% Similarity=0.419 Sum_probs=45.4
Q ss_pred HHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 147 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 147 ~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+|.+.|..||.+.=+++..+ .-+|+|.+-+.|-+|+ .++|..++|+.|.|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 66788999999888887754 5799999999999999 79999999999999987655
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.66 E-value=0.052 Score=40.20 Aligned_cols=55 Identities=29% Similarity=0.436 Sum_probs=45.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcC----CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEY----GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~f----G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l 89 (472)
....|+|+++. +++.++|+.+|..| + ...|..+.|. -|=|.|.+.+.|.+|+.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 35679999995 68999999999999 4 3567777773 4668999999999999764
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.64 E-value=0.01 Score=61.70 Aligned_cols=81 Identities=25% Similarity=0.266 Sum_probs=66.1
Q ss_pred cceeeeecCCCCccHHHHHHHHhc-cCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe---cCeeEEEEE
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLYVAV 206 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~-~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i---~gk~l~V~~ 206 (472)
+..|||.||-..+|.-.|++++.+ .|.|++. .|.. -+..|||.|.+.++|...+.+|||..+ +++.|.+.|
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 346999999999999999999994 5566666 3221 255799999999999999999999876 689999999
Q ss_pred cccHHHHHHH
Q 012034 207 AQRKEERRAR 216 (472)
Q Consensus 207 a~~k~~~~~~ 216 (472)
....+..+.+
T Consensus 519 ~~~deld~hr 528 (718)
T KOG2416|consen 519 VRADELDKHR 528 (718)
T ss_pred cchhHHHHHh
Confidence 9887766544
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.61 E-value=0.0077 Score=62.66 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHh-cCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc---CCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFG-EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF---DDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~-~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i---~g~~l~V 101 (472)
...+.|+|.||-.-+|...|++++. ..|.|+++||=+ -|..|||.|.+.++|.....+|||..+ +++.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 5578899999999999999999999 567788875422 255899999999999999999999775 3455655
Q ss_pred ecc
Q 012034 102 GKA 104 (472)
Q Consensus 102 ~~a 104 (472)
.|.
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 554
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.40 E-value=0.033 Score=48.48 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=51.1
Q ss_pred CcceEEeCCCC-----CCCCHH----HHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 27 KFNNVFVKNLD-----ESTTDE----DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 27 ~~~~l~V~nLp-----~~~tee----~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
..-||.|.=+. .+.-++ +|.+.|+.||++.-+++..+ .-+|+|.+-++|-+|+. ++|..++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCE
Confidence 45556665544 223333 66778899999887777654 57999999999999996 899999999
Q ss_pred ceeeeccccc
Q 012034 98 EWYVGKAQKK 107 (472)
Q Consensus 98 ~l~V~~a~~~ 107 (472)
.|.|....+.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999876543
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.09 E-value=0.054 Score=46.61 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=58.5
Q ss_pred cCCcceEEeCCCCCCCCH-HHHH---HHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 25 KTKFNNVFVKNLDESTTD-EDLK---KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~te-e~L~---~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
+....+|.|+=|.+++.- +||+ ..++.||+|.+|...- +--|.|.|+|..+|-+||.++.. ...|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 456788999888777643 4454 5678899999998753 34799999999999999999865 67788888
Q ss_pred eecccc
Q 012034 101 VGKAQK 106 (472)
Q Consensus 101 V~~a~~ 106 (472)
+.|-++
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 887653
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.74 E-value=0.016 Score=56.68 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=61.4
Q ss_pred ceEEeCCCCCCCCHHHHH---HHHhcCCCeeEEEEEECCC--C--CceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 29 NNVFVKNLDESTTDEDLK---KIFGEYGTITSAVVMRDGD--G--KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~---~~F~~fG~I~~v~i~~d~~--g--~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
+-+||-+|+.++.++.+- +.|..||.|.+|.+.++.. . ....-+||+|+..|+|..||...+|..++|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 557888888776665544 4899999999999888752 1 11234899999999999999999999999998777
Q ss_pred eccccc
Q 012034 102 GKAQKK 107 (472)
Q Consensus 102 ~~a~~~ 107 (472)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 666544
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.57 E-value=1.2 Score=43.06 Aligned_cols=183 Identities=14% Similarity=0.222 Sum_probs=110.4
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC--------CCCceeEEEEEeCCHHHHHHHH----HHHCC--C
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENADDAAKAV----EALNG--K 92 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~--------~g~skG~aFV~F~~~e~A~~Av----~~lng--~ 92 (472)
..|.|.+.|+..+++--.+...|-+||.|++|.++.+. +.+......+.|-+.+.+-..- +.|+. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999875 2334567889999998765433 33332 3
Q ss_pred ccCCcceeeeccccchhH----H---HHHHHH-HHhhhhhhccccccceeeeecCCCCccHHHHH-HHH---hccC----
Q 012034 93 KFDDREWYVGKAQKKSER----E---QELKGQ-FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK-ELF---SEFG---- 156 (472)
Q Consensus 93 ~i~g~~l~V~~a~~~~~~----~---~~~~~~-~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~-~~F---~~~G---- 156 (472)
.+....|.+.+-.-+-.. + ...... ......+.......++|.|.- ...++++++. +.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceE
Confidence 356666766654311100 0 001000 011111223333445666653 3445444333 222 2212
Q ss_pred ceEEEEEeeCC---CCCcccEEEEEcCCHHHHHHHHHHhC--CcEe-cCeeEEEEEcccH
Q 012034 157 TITSCKVMRDP---SGISKGSGFVAFSTPEEASRALAEMN--GKMI-VSKPLYVAVAQRK 210 (472)
Q Consensus 157 ~I~~v~i~~~~---~g~s~g~afV~f~s~~~A~~Ai~~l~--g~~i-~gk~l~V~~a~~k 210 (472)
.+++|.++... +.-.+.||.++|-+..-|...++-+. +... -.+..+|.+....
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 46778776542 34467899999999999888877655 3333 3577778766544
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.22 E-value=0.21 Score=36.98 Aligned_cols=53 Identities=26% Similarity=0.408 Sum_probs=42.7
Q ss_pred eeeeecCCCCccHHHHHHHHhcc---CceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEF---GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~---G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l 192 (472)
.|+|.+++ +++-++++.+|..| .....|..+.|. -|-|.|.|.+.|.+|+..|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 69999986 48889999999999 134567777663 3789999999999999754
No 193
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.14 E-value=0.11 Score=51.65 Aligned_cols=72 Identities=17% Similarity=0.367 Sum_probs=57.6
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCC----CCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~----g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
.|.|.||....|.+.++.+|...|.|.++.++...+ ......|||.|.+...+..|.. |.++.|-++.|.|.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 689999999999999999999999999999987532 2345689999999998888874 55555555555554
No 194
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.14 E-value=0.062 Score=58.80 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=65.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC--cceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--REWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g--~~l~V~ 102 (472)
....+.+|+++|..++....|...|..||.|..|.+-.. .-||||.|++.+.|..|++.|.|..|++ +.|.|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 466889999999999999999999999999998655432 3499999999999999999999999976 567777
Q ss_pred ccc
Q 012034 103 KAQ 105 (472)
Q Consensus 103 ~a~ 105 (472)
++.
T Consensus 527 la~ 529 (975)
T KOG0112|consen 527 LAS 529 (975)
T ss_pred ccc
Confidence 664
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.01 E-value=0.067 Score=48.70 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhc-CCCe---eEEEEEECC--CC-CceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGE-YGTI---TSAVVMRDG--DG-KSKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~-fG~I---~~v~i~~d~--~g-~skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
...++|.|++||.++|++++.+.++. ++.. ..+.-..+. .. ..-.-|||.|.+.+++....+.++|+.+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 34568999999999999999998887 6765 333322331 11 1234689999999999999999999887543
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.55 E-value=0.18 Score=43.44 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=53.4
Q ss_pred cceeeeecCCCCcc-HHHHH---HHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 131 GLNLYIKNLGDSID-DEKLK---ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 131 ~~~l~V~nL~~~~t-~e~L~---~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
-.+|.|.=|..++. .+||+ ..++.||.|.+|...- +.-|.|.|.|..+|-+|+.+++. ..-|..++++|
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34677766555443 24444 5678899999999864 45799999999999999999987 45677788887
Q ss_pred ccc
Q 012034 207 AQR 209 (472)
Q Consensus 207 a~~ 209 (472)
-++
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 543
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.38 E-value=0.62 Score=38.90 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=51.3
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcC-CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEY-GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 96 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~f-G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g 96 (472)
..+.+.+...|..++-++|..+.+.+ ..|..++|++|... ++--+.+.|.+.++|....+.+||+.+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444455556666777666666 46788999998553 56788999999999999999999998764
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.29 E-value=0.039 Score=54.09 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=60.3
Q ss_pred ceeeeecCCCCccHHHHH---HHHhccCceEEEEEeeCCC--CCc--ccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 132 LNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS--GIS--KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~---~~F~~~G~I~~v~i~~~~~--g~s--~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
.-+||-+|+..+.++.+. +.|..||.|.+|.+.++.. ..+ -.-++|+|...++|..||...+|...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 347888888777766655 5788999999999988652 111 122799999999999999999999999988766
Q ss_pred EEcccH
Q 012034 205 AVAQRK 210 (472)
Q Consensus 205 ~~a~~k 210 (472)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 655443
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.20 E-value=0.23 Score=45.52 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=46.6
Q ss_pred cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhC--CcEecCeeEEEEEccc
Q 012034 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYVAVAQR 209 (472)
Q Consensus 144 t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~--g~~i~gk~l~V~~a~~ 209 (472)
..+.|+++|..|+.+.++.+++. -+-..|.|.+.++|.+|...++ +..+.|+.++|.+++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999998888764 4468999999999999999999 9999999999998843
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.61 E-value=0.44 Score=35.81 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 38 ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 38 ~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
..++-++++..+.+|+-. .|..|.+| | ||.|.+.++|++|....++..+..-.+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~tG----f-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRTG----F-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCCE----E-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357888999999999864 46666544 5 89999999999999999998887766554
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.58 E-value=0.43 Score=35.89 Aligned_cols=56 Identities=16% Similarity=0.408 Sum_probs=44.2
Q ss_pred CCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 141 ~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
..++-++++..+..|+- . +|..|.+ || ||.|.+.++|.++....+|..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~--~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-D--RIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-c--eEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999999963 2 3444433 34 89999999999999999999988877654
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.44 E-value=0.81 Score=38.19 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=49.1
Q ss_pred eeeecCCCCccHHHHHHHHhccC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~ 198 (472)
+.+...++.++.++|..+.+.+- .|..++|++|.. .++-.+++.|.+.++|..-....||+.+.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44455566677777876666653 677889998743 25667899999999999999999999874
No 203
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=92.00 E-value=8.6 Score=36.10 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=6.1
Q ss_pred CCCCccHHHHH
Q 012034 139 LGDSIDDEKLK 149 (472)
Q Consensus 139 L~~~~t~e~L~ 149 (472)
...++++|.|.
T Consensus 16 cnrefddekil 26 (341)
T KOG2893|consen 16 CNREFDDEKIL 26 (341)
T ss_pred cccccchhhhh
Confidence 34556666554
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.87 E-value=0.24 Score=45.37 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=46.5
Q ss_pred CHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHC--CCccCCcceeeeccccc
Q 012034 41 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN--GKKFDDREWYVGKAQKK 107 (472)
Q Consensus 41 tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ln--g~~i~g~~l~V~~a~~~ 107 (472)
..+.|+++|..|+.+.++..++. -+-..|.|.+.++|.+|...|+ +..+.|..+.|.+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999998887764 4467899999999999999999 89999999999888543
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.88 E-value=0.63 Score=47.45 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=65.8
Q ss_pred ccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCC
Q 012034 14 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 92 (472)
Q Consensus 14 ~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~ 92 (472)
.+.........+...+.|+|-.+|..+|--||..|...|- .|.+++|++|.... +=-..|.|.+.++|....+.+||+
T Consensus 60 yk~n~~~s~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 60 YKKNSHSSLKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred EecCcccccccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCC
Confidence 3344443333345589999999999999999999998774 78999999985443 446789999999999999999999
Q ss_pred ccCC
Q 012034 93 KFDD 96 (472)
Q Consensus 93 ~i~g 96 (472)
.|..
T Consensus 139 ~Fn~ 142 (493)
T KOG0804|consen 139 QFNS 142 (493)
T ss_pred cCCC
Confidence 9865
No 206
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.79 E-value=0.54 Score=49.07 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=53.4
Q ss_pred cceeeeecCCCCccHHHHHHHHhc--cCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC--cEecCeeEEEE
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSE--FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVA 205 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~--~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g--~~i~gk~l~V~ 205 (472)
.|-+.++.|++.+-.|+++.+|+. +-.+.+|.+-.+. -=||+|++..||+.|.+-|.. ++|-||+|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 356788999999999999999974 6678888876542 138999999999999887654 45666666444
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.01 E-value=1 Score=34.58 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhcCC-----CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 38 ESTTDEDLKKIFGEYG-----TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 38 ~~~tee~L~~~F~~fG-----~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
..++..+|..++...+ .|-.|.|..+ |.||+-.. +.|..+++.|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577888999888764 4667777765 89998755 5899999999999999999999865
No 208
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.72 E-value=0.61 Score=48.66 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=53.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhc--CCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC--CccCCcce
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGE--YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREW 99 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~--fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng--~~i~g~~l 99 (472)
.+-+.|.++-||..+..|+++.+|+. +-.+.+|.+-.+. -=||+|++..||+.|.+.|.. +.|-|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 45677899999999999999999974 6788888876652 248999999999999988743 33555554
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.28 E-value=0.92 Score=43.95 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=53.0
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcc-eeeecccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-WYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~-l~V~~a~~ 106 (472)
.+=|-|-++|..-. .-|-.+|++||+|.+...- .+| .|-+|.|.+.-+|++||.+ ||+.|+|.. |-|..+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ng---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCC---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 44477778886543 4577889999999876543 333 3999999999999999986 899888764 34444444
Q ss_pred c
Q 012034 107 K 107 (472)
Q Consensus 107 ~ 107 (472)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 3
No 210
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.14 E-value=1.6 Score=34.26 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=40.1
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g 194 (472)
.+|--..|.++...||.++|+.||.|. |..+.| .-|||...+.+.|..++..+.-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 344444999999999999999999875 444443 2699999999999999888764
No 211
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.49 E-value=0.68 Score=42.16 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=49.3
Q ss_pred cceeeeecCCCCccHHHHHHHHhc-cCce---EEEEEeeCC--C-CCcccEEEEEcCCHHHHHHHHHHhCCcEecC----
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSE-FGTI---TSCKVMRDP--S-GISKGSGFVAFSTPEEASRALAEMNGKMIVS---- 199 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~-~G~I---~~v~i~~~~--~-g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g---- 199 (472)
++.|.|++||..+|++++.+.++. ++.. ..+.-.... . -..-.-|+|.|.+.+++......++|..+.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 457999999999999999997776 5554 333311211 1 1123458999999999999999999988743
Q ss_pred -eeEEEEEcc
Q 012034 200 -KPLYVAVAQ 208 (472)
Q Consensus 200 -k~l~V~~a~ 208 (472)
.+..|.+|-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 244555543
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.87 E-value=0.32 Score=53.12 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=61.1
Q ss_pred EEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc--CCcceeeeccccc
Q 012034 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--DDREWYVGKAQKK 107 (472)
Q Consensus 31 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i--~g~~l~V~~a~~~ 107 (472)
.++.|.+-+.+...|.-+|++||.|.+++..+|- ..|.|+|.+.|.|..|+++|+|+++ .|-..+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4567778888999999999999999999998883 3799999999999999999999985 4667777776543
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.04 E-value=0.28 Score=50.22 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=64.1
Q ss_pred cCCcceEEeCCCCCCC-CHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDEST-TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~-tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....+.|-+.-.+... |.++|...|.+||+|..|.|-+. --.|.|+|.+..+|-+|-. .++..|+++.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 4667777788778766 45799999999999999988765 2268999999999977775 589999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
.+...
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87644
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.72 E-value=1.5 Score=44.83 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=57.0
Q ss_pred cceeeeecCCCCccHHHHHHHHhccC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~ 198 (472)
++.|+|-.+|..+|-.||-.++..|- .|..++|++|... .+-..+|.|.+.++|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56799999999999999999998764 6889999996322 2446789999999999999999999875
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.51 E-value=0.4 Score=49.11 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=52.1
Q ss_pred cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 144 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 144 t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
|-++|...|..||.|..|.|-.. --.|.|+|.+..+|-+|. ..++-.|+++.|+|.|-...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 45899999999999999988553 336899999999998887 68999999999999987653
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.23 E-value=0.5 Score=51.65 Aligned_cols=72 Identities=28% Similarity=0.412 Sum_probs=61.3
Q ss_pred eeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe--cCeeEEEEEcccH
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRK 210 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i--~gk~l~V~~a~~k 210 (472)
.++.|..-..+..-|..+|++||.|.++...++ -..|.|.|.+.+.|..|.++++|+++ .|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 466777778888999999999999999998877 34799999999999999999999986 5778888877643
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.03 E-value=2.8 Score=32.18 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=36.6
Q ss_pred CCccHHHHHHHHhccC-----ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 141 DSIDDEKLKELFSEFG-----TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 141 ~~~t~e~L~~~F~~~G-----~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
+.++..+|..++...+ .|-.|.|..+ |+||.-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888888887664 4567777765 88988765 4689999999999999999999864
No 218
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.22 E-value=0.68 Score=36.90 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=44.0
Q ss_pred EEEEeCCHHHHHHHHHHHCCCc--cCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHH
Q 012034 72 GFVNFENADDAAKAVEALNGKK--FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149 (472)
Q Consensus 72 aFV~F~~~e~A~~Av~~lng~~--i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~ 149 (472)
|.|+|++.+-|.+.++. ..+. ++++.+.|.-..-.... ..+-+........+|.|.|||+..++|+|+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~---------~~k~qv~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGH---------LQKFQVFSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCC---------ceEEEEEEcccCCEEEEeCCCCCCChhhhe
Confidence 68999999999999973 2222 45555555432211100 001112233445689999999999999998
Q ss_pred HHH
Q 012034 150 ELF 152 (472)
Q Consensus 150 ~~F 152 (472)
+.+
T Consensus 71 D~L 73 (88)
T PF07292_consen 71 DKL 73 (88)
T ss_pred eeE
Confidence 754
No 219
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.91 E-value=2.3 Score=41.37 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=43.1
Q ss_pred eecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe
Q 012034 136 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200 (472)
Q Consensus 136 V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk 200 (472)
|-+++.. ...-|..+|++||.|.+..-. .+|. +-+|.|.+.-+|.+|| .-||+.|+|.
T Consensus 202 VfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngN---wMhirYssr~~A~KAL-skng~ii~g~ 259 (350)
T KOG4285|consen 202 VFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGN---WMHIRYSSRTHAQKAL-SKNGTIIDGD 259 (350)
T ss_pred EeccCcc-chhHHHHHHHhhCeeeeeecC--CCCc---eEEEEecchhHHHHhh-hhcCeeeccc
Confidence 3344432 335678899999999876544 2333 7899999999999999 6788888775
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.78 E-value=0.69 Score=49.38 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=62.1
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..++||+|+...+..+-++.+...+|.|.+++... |||+.|.....+.+|+..++-..++|..+.+...
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 35799999999999999999999999999988654 8999999999999999999999999988877764
No 221
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=78.90 E-value=6.6 Score=31.04 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=46.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l 89 (472)
.|-|+-..+.+.+..+|++.+++ || .|.+|..+.-..+.. =|||.+...++|...-..+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHHhh
Confidence 35666677899999999999997 67 688888877754432 5999999998888776543
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.38 E-value=6.8 Score=41.46 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=58.4
Q ss_pred cceeeeecCCC-CccHHHHHHHHhcc----CceEEEEEeeCCC-----------CC------------------------
Q 012034 131 GLNLYIKNLGD-SIDDEKLKELFSEF----GTITSCKVMRDPS-----------GI------------------------ 170 (472)
Q Consensus 131 ~~~l~V~nL~~-~~t~e~L~~~F~~~----G~I~~v~i~~~~~-----------g~------------------------ 170 (472)
...|-|-|++| .+...||.-+|+.| |.|.+|.|....- |-
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 34688999997 57889999999877 6899999976431 11
Q ss_pred -------------cccEEEEEcCCHHHHHHHHHHhCCcEecCe--eEEEEE
Q 012034 171 -------------SKGSGFVAFSTPEEASRALAEMNGKMIVSK--PLYVAV 206 (472)
Q Consensus 171 -------------s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk--~l~V~~ 206 (472)
.--||.|.|.+.+.|...+..+.|..+... .+-+.|
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 013799999999999999999999998644 444443
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.22 E-value=8.1 Score=40.93 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=61.1
Q ss_pred cCCcceEEeCCCCCC-CCHHHHHHHHhcC----CCeeEEEEEECCC-----------CC---------------------
Q 012034 25 KTKFNNVFVKNLDES-TTDEDLKKIFGEY----GTITSAVVMRDGD-----------GK--------------------- 67 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~-~tee~L~~~F~~f----G~I~~v~i~~d~~-----------g~--------------------- 67 (472)
....++|-|-|+.|+ +.-++|.-+|+.| |.|.+|.|....- |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345788999999986 5778999999988 6999999875321 11
Q ss_pred ----------------ceeEEEEEeCCHHHHHHHHHHHCCCccCCc--ceeeecc
Q 012034 68 ----------------SKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGKA 104 (472)
Q Consensus 68 ----------------skG~aFV~F~~~e~A~~Av~~lng~~i~g~--~l~V~~a 104 (472)
.--||.|+|.+.++|....+.++|..+... .|.+.+-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 113788999999999999999999998643 4444443
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=73.01 E-value=6.8 Score=32.59 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc--cCCcceeeeccccchhHHHH
Q 012034 36 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK--FDDREWYVGKAQKKSEREQE 113 (472)
Q Consensus 36 Lp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~--i~g~~l~V~~a~~~~~~~~~ 113 (472)
||..+ ++|.++|+.=|+|.+|..... |.| ..|+-.++|.. ++|+ |.+...+.....
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq------------ypd----ndal~~~~G~lE~vDg~-i~IGs~q~~~sV--- 68 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ------------YPD----NDALLYVHGTLEQVDGN-IRIGSGQTPASV--- 68 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec------------cCC----chhhheeeeehhhccCc-EEEccCCCcccE---
Confidence 55554 369999999999999876543 222 22333344433 4554 666655432210
Q ss_pred HHHHHHhhhhhhcccc-ccceeeeecCCCCccHHHHHHHHhc---cCceEEEEEeeCC--CCCcccEEEEEcCCH
Q 012034 114 LKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSE---FGTITSCKVMRDP--SGISKGSGFVAFSTP 182 (472)
Q Consensus 114 ~~~~~~~~~~~~~~~~-~~~~l~V~nL~~~~t~e~L~~~F~~---~G~I~~v~i~~~~--~g~s~g~afV~f~s~ 182 (472)
..... .+.+ |.--|..+|-.+|+++|++ |-.|+.-.|.+|. .| +-..||..|...
T Consensus 69 -----------~i~gTPsgnn--v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 69 -----------RIQGTPSGNN--VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred -----------EEecCCCCCc--eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 00111 1111 2224678899999999985 5556665566552 23 234677777654
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.62 E-value=13 Score=28.86 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=44.8
Q ss_pred eEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH
Q 012034 30 NVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l 89 (472)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-..+- -=|||.+...++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHhh
Confidence 5777778899999999999997 66 67788877765432 25899999888887765443
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.92 E-value=9.5 Score=37.12 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=60.4
Q ss_pred cccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC--------CCCcccEEEEEcCCHHHHHHHHH----HhCC
Q 012034 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--------SGISKGSGFVAFSTPEEASRALA----EMNG 194 (472)
Q Consensus 127 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~--------~g~s~g~afV~f~s~~~A~~Ai~----~l~g 194 (472)
+.|..++|.+.|+..+++-..+...|-+||.|++|.++.+. +.+......+.|-+.+.+-.... .+..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999998875 22345678899999888755433 2222
Q ss_pred --cEecCeeEEEEEcc
Q 012034 195 --KMIVSKPLYVAVAQ 208 (472)
Q Consensus 195 --~~i~gk~l~V~~a~ 208 (472)
..+..+.|.+++..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 23566677776654
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=69.96 E-value=4.4 Score=35.42 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=75.1
Q ss_pred ceEEeCCCC--CCCCHHHHHHHHhc-CCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 29 NNVFVKNLD--ESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 29 ~~l~V~nLp--~~~tee~L~~~F~~-fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
....|+.+- .+.+-..|.+.+.+ ++....+.+..- ..++..+.|.+.+++.++++. ....+.+..+.+..-.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 344455442 34667777776654 343333344332 246899999999999999974 4555677777776654
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCC-ccHHHHHHHHhccCceEEEEEeeC
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRD 166 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~e~L~~~F~~~G~I~~v~i~~~ 166 (472)
........ .-.....=+-|.|||.. .+++-++.+.+.+|.+.++.....
T Consensus 91 ~~~~~~~~------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 91 PDFNPSEV------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccc------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 32211000 00011223667799965 678889999999999998886543
No 228
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=68.61 E-value=4.2 Score=36.56 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCC--CceeEEEEEeCCHHHHHHHHHH
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG--KSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g--~skG~aFV~F~~~e~A~~Av~~ 88 (472)
...+++|.+ +.+..-++|.++-+ |.+..|...+-.++ ..+|--||+|.+.+.|..+++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456778877 22333334444444 78877766555444 5689999999999999998875
No 229
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.34 E-value=11 Score=27.92 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCCeeEEEEEE
Q 012034 43 EDLKKIFGEYGTITSAVVMR 62 (472)
Q Consensus 43 e~L~~~F~~fG~I~~v~i~~ 62 (472)
.+|+++|+.+|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999998766543
No 230
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=64.98 E-value=14 Score=30.95 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHhcCC-CeeEEEEEEC-----CCCCceeEEEEEeCCHHHHHH
Q 012034 38 ESTTDEDLKKIFGEYG-TITSAVVMRD-----GDGKSKCFGFVNFENADDAAK 84 (472)
Q Consensus 38 ~~~tee~L~~~F~~fG-~I~~v~i~~d-----~~g~skG~aFV~F~~~e~A~~ 84 (472)
.+++.+||++-+.+.- .-.++.+.-+ ..|++.|||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5789999999888643 2222333222 46899999998 778777764
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.03 E-value=6.7 Score=33.07 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHH
Q 012034 40 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81 (472)
Q Consensus 40 ~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~ 81 (472)
++.++|++.|+.|..+. ++...+..| .+|++.|.|.+.-+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChH
Confidence 45689999999999875 566676554 57999999976543
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.68 E-value=18 Score=34.75 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=27.0
Q ss_pred cceeeeecCCCC------------ccHHHHHHHHhccCceEEEEEe
Q 012034 131 GLNLYIKNLGDS------------IDDEKLKELFSEFGTITSCKVM 164 (472)
Q Consensus 131 ~~~l~V~nL~~~------------~t~e~L~~~F~~~G~I~~v~i~ 164 (472)
..+||+.+||-. -+++.|+..|+.||.|..|.|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 457888888743 3568999999999999988874
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.37 E-value=16 Score=35.38 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=37.6
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHH
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 80 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e 80 (472)
-.+.||++||+.++.-.+|+..+.+.|.+- ..|.+. | .+|-||+.|-+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk--g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK--G-HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeee--c-CCcceeEecCCcc
Confidence 356799999999999999999999987642 233333 2 3667999997653
No 234
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=57.83 E-value=6.9 Score=35.35 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=48.8
Q ss_pred eeeeecCCCCccH-----HHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe-eEEEEE
Q 012034 133 NLYIKNLGDSIDD-----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYVAV 206 (472)
Q Consensus 133 ~l~V~nL~~~~t~-----e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk-~l~V~~ 206 (472)
.+.+-+++..+.. .....+|-.|-......+++ +.++..|.|.+.+.|..|...+++..+.|+ .+...+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 3555555544322 23334455454444444444 356678899999999999999999999998 777777
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
++..
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 7654
No 235
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=57.77 E-value=31 Score=28.18 Aligned_cols=47 Identities=28% Similarity=0.465 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEEEEC-----CCCCceeEEEEEeCCHHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVVMRD-----GDGKSKCFGFVNFENADDAAKA 85 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i~~d-----~~g~skG~aFV~F~~~e~A~~A 85 (472)
.+.+..+|++.+.+ |+.=.+..++.. ..|+++|||.| |.|.+.|++.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788899887764 664334444443 24678888888 7787777643
No 236
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=53.75 E-value=36 Score=29.76 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=43.1
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~ 87 (472)
..|-|+--++.+.+..+|++.+++ |+ .|.+|..+....|.. =|||.+....+|...-.
T Consensus 81 ~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 346677778899999999999997 66 677888777655533 48999987777654443
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.27 E-value=25 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.3
Q ss_pred HHHHHHHhccCceEEEEEee
Q 012034 146 EKLKELFSEFGTITSCKVMR 165 (472)
Q Consensus 146 e~L~~~F~~~G~I~~v~i~~ 165 (472)
.+||++|+..|.|.-+.|-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999998766633
No 238
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.11 E-value=19 Score=36.43 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=44.1
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCC-eeEEEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~-I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~ 87 (472)
-+-|-|.++|.....+||-..|+.|+. --.|+++.| -.+|-.|++...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 456889999999999999999999975 234555554 289999999999999996
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.73 E-value=48 Score=26.21 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=42.6
Q ss_pred eeeeecCCCCccHHHHHHHHhc-cC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh
Q 012034 133 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 192 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~-~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l 192 (472)
+-|+-..+...+..++++.++. || .|.+|....-..+ .-=|||++..-++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 4677777889999999999987 55 5777766554433 335999999888887765443
No 240
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=51.41 E-value=9.5 Score=34.48 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=49.2
Q ss_pred cceEEeCCCCCCCCH-HH----HHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc-ceee
Q 012034 28 FNNVFVKNLDESTTD-ED----LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR-EWYV 101 (472)
Q Consensus 28 ~~~l~V~nLp~~~te-e~----L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~-~l~V 101 (472)
-+++++.+|+.++-. .+ ...+|..|.+..-..++ ++.++--|.|.+.+.|.+|...+++..|.|+ .+..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 345677777755432 22 33445544443333333 2355667999999999999999999999988 7777
Q ss_pred eccccc
Q 012034 102 GKAQKK 107 (472)
Q Consensus 102 ~~a~~~ 107 (472)
-+++..
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 666643
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.61 E-value=72 Score=24.74 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=41.3
Q ss_pred eeeeecCCCCccHHHHHHHHhc-cC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~-~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~ 191 (472)
+-|+-..+...+..++++.++. || .|.+|..+.-+.+ .--|||++..-++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 4677788999999999999987 55 5667765544332 33589999888777766543
No 242
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=45.42 E-value=56 Score=28.17 Aligned_cols=46 Identities=24% Similarity=0.539 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHhc-CC-CeeEEEEEEC-----CCCCceeEEEEEeCCHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YG-TITSAVVMRD-----GDGKSKCFGFVNFENADDAAK 84 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG-~I~~v~i~~d-----~~g~skG~aFV~F~~~e~A~~ 84 (472)
...+.++|++.+.. |+ .=.+..++.. ..|++.|||.| |.+.|+|..
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 47888999998875 66 2233333333 25788899888 777776654
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.52 E-value=23 Score=29.84 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=23.5
Q ss_pred ccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHH
Q 012034 143 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183 (472)
Q Consensus 143 ~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~ 183 (472)
.+.++|++.|+.|..++ ++.+.+..| ..|+++|.|.+.-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCCh
Confidence 45689999999998765 555555443 4889999997643
No 244
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.94 E-value=4e+02 Score=30.40 Aligned_cols=121 Identities=18% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q 012034 243 GPSGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPVVSQGQQGQRPGGRRGAGPVQQTQQPLPIM-P 321 (472)
Q Consensus 243 ~~~g~g~~~~~g~~p~~~~pp~~~~~~~~~~~p~~~p~~~~~p~~~~p~~~~~~~~~~~~~~~g~~p~~~~~~~~p~~-~ 321 (472)
.++++++...+++ ||+..|+++..+.-+...|+|+-+++++..-.+......+..+...+++-..+....-+..+.. +
T Consensus 38 p~p~~~~~~p~~~-ppg~~p~~~q~~~~~~~~p~~~~pg~~p~~sq~~~~a~~p~~q~~~p~~~s~~g~p~~~gs~~s~~ 116 (1007)
T KOG1984|consen 38 PPPPMQGTGPRGP-PPGAPPQQPQSGQSPMARPPQRRPGPPPGVSQPNGFAASPSSQPSYPGRPSTPGGPQAGGSQSSFA 116 (1007)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCcccCCCCCCCCCcccccCCCccccCCCCCCCCCCCCcccCCCccccc
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 012034 322 HQMPPRGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRD 366 (472)
Q Consensus 322 ~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (472)
.....-+.++..|.+ ++++..+...+.+ ..-.++..+- .|.++
T Consensus 117 ~~~p~~~~~~gpp~g~~q~~~~pls~~~~-~~~~pq~s~f-~p~~~ 160 (1007)
T KOG1984|consen 117 AAGPSSGSGTGPPSGNSQGPAGPLSQGPP-TGGFPQPSAF-PPGPQ 160 (1007)
T ss_pred ccCCCCCCcCCCCCCccCCCCCccccCCC-CCCCCCCccC-CCCcc
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=43.22 E-value=29 Score=26.22 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=45.3
Q ss_pred HHHHHHHhcCC-CeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 43 EDLKKIFGEYG-TITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 43 e~L~~~F~~fG-~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
++|++.|...| +|.++.-+... ++...---||+.+...+.+. .++=+.+++..+.|++..++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCC
Confidence 57888899999 57777766664 55566678888877665333 345677889999999876653
No 246
>PHA03378 EBNA-3B; Provisional
Probab=42.40 E-value=3.4e+02 Score=29.97 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.2
Q ss_pred eeeeecCC
Q 012034 133 NLYIKNLG 140 (472)
Q Consensus 133 ~l~V~nL~ 140 (472)
|+|-..|+
T Consensus 540 cvy~~~l~ 547 (991)
T PHA03378 540 CVYTEDLD 547 (991)
T ss_pred ceeecccC
Confidence 45555554
No 247
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=42.27 E-value=4.1 Score=42.81 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
-+.++||++|++.+++-.+|..+++.+--+..+.+..+ ...+-..+++|.|+---....|+.+||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 35678999999999999999999998876666665554 2334455788999988888888888888776443
No 248
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=41.53 E-value=1.9 Score=47.55 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=28.7
Q ss_pred CCcceEEeCCCCCCC-CHHHHHHHHhcCC--CeeEEEEEEC
Q 012034 26 TKFNNVFVKNLDEST-TDEDLKKIFGEYG--TITSAVVMRD 63 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~-tee~L~~~F~~fG--~I~~v~i~~d 63 (472)
...+||+|..||.++ ++++|+++|.+.+ +|.+..+.+|
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~~~ 246 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRD 246 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhhhh
Confidence 468999999999775 7788999999864 5555544443
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.08 E-value=48 Score=32.96 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 72 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 72 aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
|||+|++.++|..|.+.+.... ++.+.+..|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999655443 355666666443
No 250
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=39.76 E-value=32 Score=33.33 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=35.5
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCce-EEEEEeeCCCCCcccEEEEEcCCHH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPE 183 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I-~~v~i~~~~~g~s~g~afV~f~s~~ 183 (472)
+.||++||+.++...||+..+.+.+.+ .++..- | ..|-||++|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCcc
Confidence 359999999999999999999888754 233332 2 3667999997654
No 251
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=89 Score=31.94 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=29.1
Q ss_pred cccceeeeecCCC-CccHHHHHHHHhcc----CceEEEEEeeC
Q 012034 129 FQGLNLYIKNLGD-SIDDEKLKELFSEF----GTITSCKVMRD 166 (472)
Q Consensus 129 ~~~~~l~V~nL~~-~~t~e~L~~~F~~~----G~I~~v~i~~~ 166 (472)
....+|-|-|++| .+...+|..+|+.| |.|..|.|...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3445788999997 57789999999876 67887877543
No 252
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.11 E-value=1.3e+02 Score=26.44 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=42.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcC---CCeeEEEEEECC----------CCCcee-EEEEEeCCHHHH
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEY---GTITSAVVMRDG----------DGKSKC-FGFVNFENADDA 82 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~f---G~I~~v~i~~d~----------~g~skG-~aFV~F~~~e~A 82 (472)
.++...||++-+..-+|+++-++..++= +++.+|.+-+.. +...+. |-+|.|++-+..
T Consensus 84 pkd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 84 PKDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred cCCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 3444889999999999999999999864 577777765431 112344 889999986543
No 253
>PHA03378 EBNA-3B; Provisional
Probab=35.14 E-value=6.7e+02 Score=27.85 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.9
Q ss_pred CCHHHHHHHH
Q 012034 40 TTDEDLKKIF 49 (472)
Q Consensus 40 ~tee~L~~~F 49 (472)
.++++|..-|
T Consensus 327 Ltsedi~~Af 336 (991)
T PHA03378 327 LTSEEIDLAY 336 (991)
T ss_pred chHHHHHHHH
Confidence 4455555444
No 254
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=34.93 E-value=41 Score=25.47 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=42.8
Q ss_pred HHHHHHHhcCC-CeeEEEEEECCC-CCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 43 EDLKKIFGEYG-TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 43 e~L~~~F~~fG-~I~~v~i~~d~~-g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
++|++.|.+.| ++..+.-+...+ +..-..-||+....-+-.. .|+=+.+++.++.|++..++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46888899999 577777666644 3344566777766543333 355677899999999876653
No 255
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.59 E-value=8.5 Score=39.38 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=64.3
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
..|+..++...+++++.-.|..||.|..+..-+.. +|..+-.+||+-.+ .+|..+|..+.-..++|..+++.++....
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 45677888899999999999999999988776553 45566788888765 45788888888888899999999887764
Q ss_pred HHH
Q 012034 212 ERR 214 (472)
Q Consensus 212 ~~~ 214 (472)
..+
T Consensus 84 ~~r 86 (572)
T KOG4365|consen 84 EKR 86 (572)
T ss_pred hhh
Confidence 443
No 256
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=34.25 E-value=1.8e+02 Score=21.07 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHH
Q 012034 42 DEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 42 ee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ 88 (472)
=.++.++|.+.| .|.++.+....+ +++--+.+.+.+.|.+++++
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH
Confidence 356778888887 688887655422 46666677777777777765
No 257
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=33.20 E-value=1.6e+02 Score=23.11 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHhc-CCC----eeEEEEEEC-CCCCceeEEEEEeCCHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGT----ITSAVVMRD-GDGKSKCFGFVNFENADDAAK 84 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~----I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~ 84 (472)
...+.++|++.+.. |+. |.-..+... ..+.+.|||.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 45677888887765 442 222222222 35678889888 778777664
No 258
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.54 E-value=19 Score=36.56 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCcceEEeCCCCCCCCHH--------HHHHHHhc--CCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHH
Q 012034 26 TKFNNVFVKNLDESTTDE--------DLKKIFGE--YGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVE 87 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee--------~L~~~F~~--fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~ 87 (472)
...+.+|+.++..+.+.+ ++...|.. ++.+..+...+|. +.+++|--|++|...+.+.++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456789999999877766 99999999 5677777777774 77889999999999999998874
No 259
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.05 E-value=40 Score=32.52 Aligned_cols=35 Identities=14% Similarity=0.399 Sum_probs=28.1
Q ss_pred CcceEEeCCCCCC------------CCHHHHHHHHhcCCCeeEEEEE
Q 012034 27 KFNNVFVKNLDES------------TTDEDLKKIFGEYGTITSAVVM 61 (472)
Q Consensus 27 ~~~~l~V~nLp~~------------~tee~L~~~F~~fG~I~~v~i~ 61 (472)
.-.|||+.+||-. -+++.|+..|+.||+|..|.|.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3567899888732 3678999999999999988874
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.36 E-value=43 Score=33.93 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=49.1
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEECCC---CCceeEEEEEeCCHHHHHHHHHHHCCCcc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGD---GKSKCFGFVNFENADDAAKAVEALNGKKF 94 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~---g~skG~aFV~F~~~e~A~~Av~~lng~~i 94 (472)
....|.|.+||...++++|.+-+..|- .+.-..+..... ..-.+.+||+|...++.......++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356799999999999999998887764 233333332211 12257899999999998888888887764
No 261
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.78 E-value=25 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHh
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFG 50 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~ 50 (472)
....++|-|.|||...++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 56788999999999999999998654
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.16 E-value=12 Score=38.34 Aligned_cols=79 Identities=6% Similarity=-0.045 Sum_probs=62.1
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
++.|+..++...+++++.-+|..||.|..+...+- ..|..+-.+||+-.+ .++..+|..+....+.+..++|..+...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 45678899999999999999999999988777655 345566688887755 5678888888888888888888776544
Q ss_pred h
Q 012034 108 S 108 (472)
Q Consensus 108 ~ 108 (472)
.
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 3
No 263
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.00 E-value=1e+02 Score=31.53 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=41.5
Q ss_pred eeeeecCCCCccHHHHHHHHhccCce-EEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I-~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~ 191 (472)
.|-|-+++....-+||...|+.|+.- -+|+.+.| -.+|-.|.+...|..|+..
T Consensus 393 VlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 393 VLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred eeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 36678899999999999999999743 23455543 3699999999999999954
No 264
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.93 E-value=1e+02 Score=24.52 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeC
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~ 77 (472)
.-...|||+|++..+-|.-...+.+..+. -++.+++..++ ..||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCC-CCCEEEEEeC
Confidence 45677999999988877666655555544 33444444333 6899998773
No 265
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.56 E-value=99 Score=25.15 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=32.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCC
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 78 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~ 78 (472)
.-...|||++++..+-|.--..+-+.++. -++.+....+ +..||+|-++-+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN-TESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC-CCCCcEEEecCC
Confidence 45677999999887776544444444544 3444444433 344999987765
No 266
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=2.9e+02 Score=22.92 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEEEEC-C----CCCceeEEEEEeCCHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVVMRD-G----DGKSKCFGFVNFENADDAAK 84 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i~~d-~----~g~skG~aFV~F~~~e~A~~ 84 (472)
.+.+.++|++.+.. +|.=.+..++.. . .++++|||-| |.|.+.|..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 56788899998875 675444444433 2 4678899888 777777653
No 267
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.36 E-value=1.1e+02 Score=31.22 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=30.1
Q ss_pred CCcceEEeCCCCCC-CCHHHHHHHHhcC----CCeeEEEEEEC
Q 012034 26 TKFNNVFVKNLDES-TTDEDLKKIFGEY----GTITSAVVMRD 63 (472)
Q Consensus 26 ~~~~~l~V~nLp~~-~tee~L~~~F~~f----G~I~~v~i~~d 63 (472)
....+|-|-|+.|+ +...+|..+|+.| |.|..|.|...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 45678999999976 6678999999887 67888887654
No 268
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.36 E-value=50 Score=21.60 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhcCCC
Q 012034 38 ESTTDEDLKKIFGEYGT 54 (472)
Q Consensus 38 ~~~tee~L~~~F~~fG~ 54 (472)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999987643
No 269
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=24.79 E-value=3.1e+02 Score=20.71 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCC---HHHHHHHHHHHCC
Q 012034 42 DEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFEN---ADDAAKAVEALNG 91 (472)
Q Consensus 42 ee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~---~e~A~~Av~~lng 91 (472)
-.++-+.|+++| .|.++......++...-.-||.++. .++...+++.|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 356778888886 6778766555443333345577763 5667777777654
No 270
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=24.23 E-value=3e+02 Score=20.39 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCC---HHHHHHHHHHHCC
Q 012034 42 DEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFEN---ADDAAKAVEALNG 91 (472)
Q Consensus 42 ee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~---~e~A~~Av~~lng 91 (472)
-.++-+.|+.+| .|.++.-.........-.-||.++. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 346777888886 6777754444333334466788874 5667777777643
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.22 E-value=41 Score=31.77 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEE
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 59 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~ 59 (472)
-...+||+-|+|..+|++.|+++.+.+|.+.++.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4567899999999999999999999999665443
No 272
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=24.03 E-value=93 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=31.9
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCce
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSK 69 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~sk 69 (472)
+..|.|+-.+..+.|..+|++.++. || .+.+|..+.-..+..|
T Consensus 19 ~~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR 63 (94)
T COG0089 19 EKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKR 63 (94)
T ss_pred hhCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceE
Confidence 3456777777899999999999986 77 6778887766544333
No 273
>PRK11901 hypothetical protein; Reviewed
Probab=23.28 E-value=1.5e+02 Score=29.57 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=39.0
Q ss_pred eeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEE--EcCCHHHHHHHHHHhCCc
Q 012034 135 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV--AFSTPEEASRALAEMNGK 195 (472)
Q Consensus 135 ~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV--~f~s~~~A~~Ai~~l~g~ 195 (472)
|.--|-...+++.|..+..+++ +..+.|+.. ++|+.+ |.+| .|.+.++|..|+..|.-.
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 3333333456788888888775 455665544 345543 5544 689999999999988753
No 274
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.18 E-value=92 Score=24.40 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=23.6
Q ss_pred CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC
Q 012034 54 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 91 (472)
Q Consensus 54 ~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng 91 (472)
.|.|+....+ -+||-||+=.+.+++..|++.+.+
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccc
Confidence 5666655443 589999999999999999986543
No 275
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.15 E-value=2.2e+02 Score=24.94 Aligned_cols=54 Identities=11% Similarity=0.321 Sum_probs=37.5
Q ss_pred eeeeecCCCCccHHHHHHHHhc-cC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHH
Q 012034 133 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRA 188 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~-~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~A 188 (472)
+-|+-.++...+..+|++.++. |+ .|..|..+.-+.|. -=|||++....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHH
Confidence 5777788899999999999987 55 46666544443433 2489999776665443
No 276
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.51 E-value=2.5e+02 Score=30.01 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHHh----cCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC
Q 012034 42 DEDLKKIFG----EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 91 (472)
Q Consensus 42 ee~L~~~F~----~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng 91 (472)
.-+|..+|. .+|-|+++.+.-.+.-+.+...++.|.+.++|..++..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 446777665 68889998887765555566888999999999999987643
No 277
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.79 E-value=2.9e+02 Score=19.00 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHH
Q 012034 43 EDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 86 (472)
Q Consensus 43 e~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av 86 (472)
.++...|.+.| .|.++.+.... ..++..-+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 45667777776 68777766553 34667788889988887765
No 278
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.68 E-value=2.6e+02 Score=22.52 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=37.1
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcC--------CCeeEEEEEE------CCCCCcee-EEEEEeCCHHHHHHHHHH
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEY--------GTITSAVVMR------DGDGKSKC-FGFVNFENADDAAKAVEA 88 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~f--------G~I~~v~i~~------d~~g~skG-~aFV~F~~~e~A~~Av~~ 88 (472)
.+-++||=+ .+.+++++..+.+++ |+|.++.-.- .-.+..+| |-++.|+..-++.+.++.
T Consensus 7 ~YE~~~Il~--p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 7 KYETMYLLK--PDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ceeEEEEEC--CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 455566643 677887777665544 4666554322 22455677 577889877777777764
No 279
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=20.43 E-value=90 Score=25.56 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=37.8
Q ss_pred hhhhhhHhhcCCccchhhhHhhcCCCh-----HHHHHhhCChH-------HHHHHHHHHHHHHHHHHHhhc
Q 012034 396 ESLYPLVEQLERDAAAKVTGMLLEMDQ-----TEVLHLLESPE-------ALKAKVAEAMEVLRSVAQQQA 454 (472)
Q Consensus 396 ~~l~~~v~~~~~~~a~kitgmll~~~~-----~e~~~~~~~~~-------~l~~~v~~a~~~l~~~~~~~~ 454 (472)
+.|||.+....+...+-|..|.-|.+. .+|...+.+.. .|...+++-...|..|-..+.
T Consensus 56 ~~l~p~l~~~~~~~~~~~~~~~~eH~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~H~~~Ee 126 (133)
T PF01814_consen 56 EYLFPALERRDPRGDALIAELRREHEEIRALLDELEEALARYSGDEEDAEELREALRALAEWLRRHIAKEE 126 (133)
T ss_dssp HHHHTTHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HhhccccccchhccccchhhHHHHHHHHHHHHHHHHHHHhhCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877677777777666666544 33444444444 677777778888887776553
Done!