Query 012034
Match_columns 472
No_of_seqs 346 out of 2099
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 20:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.2E-35 7.6E-40 277.1 22.1 175 26-217 13-188 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.1E-33 3.9E-38 253.2 20.0 165 29-209 1-166 (166)
3 2qfj_A FBP-interacting repress 100.0 6.4E-33 2.2E-37 259.7 21.4 178 26-210 26-205 (216)
4 1fxl_A Paraneoplastic encephal 100.0 1.2E-32 4.1E-37 246.8 21.3 162 28-207 2-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 9.3E-33 3.2E-37 254.7 20.4 177 25-215 10-188 (196)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.5E-33 2.2E-37 249.2 18.5 163 27-207 2-168 (168)
7 3nmr_A Cugbp ELAV-like family 100.0 1.9E-32 6.4E-37 247.7 20.2 165 27-208 2-175 (175)
8 3smz_A Protein raver-1, ribonu 100.0 4.9E-32 1.7E-36 265.0 22.5 183 26-223 93-277 (284)
9 2cjk_A Nuclear polyadenylated 100.0 2E-32 6.9E-37 245.9 15.5 163 27-210 2-166 (167)
10 2ghp_A U4/U6 snRNA-associated 100.0 2.7E-31 9.1E-36 260.9 18.7 172 27-210 116-291 (292)
11 3pgw_A U1-A; protein-RNA compl 100.0 9E-31 3.1E-35 255.8 20.3 179 25-209 6-282 (282)
12 1fje_B Nucleolin RBD12, protei 100.0 1.2E-31 4.2E-36 242.9 11.4 165 25-210 10-174 (175)
13 2g4b_A Splicing factor U2AF 65 100.0 7.8E-31 2.7E-35 236.6 16.0 158 27-208 3-172 (172)
14 2dyd_A Poly(A)-binding protein 100.0 1.5E-32 5.1E-37 211.8 3.5 78 375-452 7-84 (85)
15 3tyt_A Heterogeneous nuclear r 100.0 5.3E-31 1.8E-35 245.7 14.6 176 27-207 3-204 (205)
16 1ifw_A Polyadenylate-binding p 100.0 8.9E-32 3E-36 210.7 7.4 78 376-453 6-85 (92)
17 1nmr_A Poly(A)-binding protein 100.0 2.8E-32 9.5E-37 210.3 3.0 77 374-450 7-83 (85)
18 3kuj_A Polyadenylate-binding p 100.0 2.5E-31 8.6E-36 207.0 8.0 79 376-454 6-84 (88)
19 2yh0_A Splicing factor U2AF 65 100.0 1.3E-31 4.3E-36 247.5 6.9 178 27-210 3-194 (198)
20 1g9l_A Polyadenylate-binding p 100.0 8.5E-31 2.9E-35 222.1 10.3 80 375-454 51-130 (144)
21 2adc_A Polypyrimidine tract-bi 100.0 7.6E-30 2.6E-34 242.0 15.1 178 25-210 31-228 (229)
22 3sde_A Paraspeckle component 1 100.0 1.7E-29 5.7E-34 244.4 17.5 156 26-210 20-179 (261)
23 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-29 7.2E-34 247.3 17.8 161 25-212 38-199 (292)
24 3smz_A Protein raver-1, ribonu 100.0 8.3E-29 2.8E-33 242.1 20.2 156 25-210 19-175 (284)
25 1qm9_A Polypyrimidine tract-bi 100.0 7.8E-30 2.7E-34 235.9 9.6 176 27-210 2-197 (198)
26 1i2t_A HYD protein; four alpha 99.9 1.1E-28 3.8E-33 178.9 5.8 60 390-449 1-60 (61)
27 4f25_A Polyadenylate-binding p 99.9 6.2E-23 2.1E-27 173.2 9.8 110 27-147 4-113 (115)
28 2kn4_A Immunoglobulin G-bindin 99.9 5.4E-22 1.9E-26 176.8 12.0 148 57-210 2-150 (158)
29 4fxv_A ELAV-like protein 1; RN 99.8 2.5E-20 8.4E-25 152.9 10.9 81 26-106 17-98 (99)
30 2i2y_A Fusion protein consists 99.8 5.3E-21 1.8E-25 169.0 7.0 138 66-210 10-148 (150)
31 3s8s_A Histone-lysine N-methyl 99.8 1.6E-19 5.4E-24 151.0 12.6 88 26-113 4-92 (110)
32 4fxv_A ELAV-like protein 1; RN 99.8 3.7E-19 1.3E-23 145.8 11.2 83 127-209 15-98 (99)
33 3lqv_A PRE-mRNA branch site pr 99.8 7.2E-19 2.5E-23 148.0 9.7 104 26-157 6-109 (115)
34 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.9E-18 6.4E-23 137.7 10.6 82 26-107 4-86 (87)
35 2lkz_A RNA-binding protein 5; 99.8 3.2E-19 1.1E-23 144.9 6.1 82 25-106 6-94 (95)
36 3s8s_A Histone-lysine N-methyl 99.8 6.3E-18 2.2E-22 141.2 14.0 91 130-220 5-96 (110)
37 3md1_A Nuclear and cytoplasmic 99.8 2.6E-18 9E-23 135.6 10.9 79 29-107 2-81 (83)
38 2do4_A Squamous cell carcinoma 99.8 2.1E-18 7E-23 141.4 10.4 84 25-108 14-97 (100)
39 3p5t_L Cleavage and polyadenyl 99.8 8E-19 2.8E-23 141.1 7.8 81 29-109 2-85 (90)
40 2lxi_A RNA-binding protein 10; 99.8 1.8E-19 6.1E-24 145.4 3.8 82 28-109 1-85 (91)
41 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-18 1.1E-22 141.5 10.9 84 26-109 13-99 (105)
42 2ywk_A Putative RNA-binding pr 99.8 3.6E-18 1.2E-22 138.5 10.6 82 25-106 13-94 (95)
43 1s79_A Lupus LA protein; RRM, 99.8 2E-18 6.8E-23 142.4 9.2 83 26-109 9-91 (103)
44 2d9p_A Polyadenylate-binding p 99.8 3.1E-18 1.1E-22 141.1 10.2 84 25-109 12-95 (103)
45 2dnz_A Probable RNA-binding pr 99.8 5.1E-18 1.7E-22 137.6 11.0 83 26-108 3-86 (95)
46 1whw_A Hypothetical protein ri 99.7 2.4E-18 8.4E-23 140.6 8.9 85 25-109 5-90 (99)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.3E-18 1.1E-22 135.6 9.0 81 25-105 4-85 (85)
48 2fy1_A RNA-binding motif prote 99.7 4E-18 1.4E-22 143.8 10.1 83 26-108 5-87 (116)
49 2cpz_A CUG triplet repeat RNA- 99.7 3.4E-18 1.2E-22 143.8 9.6 83 26-108 23-106 (115)
50 3n9u_C Cleavage and polyadenyl 99.7 6.3E-18 2.1E-22 150.2 11.6 85 27-111 54-141 (156)
51 1p27_B RNA-binding protein 8A; 99.7 6.6E-18 2.3E-22 139.8 10.8 84 25-108 20-104 (106)
52 1sjq_A Polypyrimidine tract-bi 99.7 3.5E-18 1.2E-22 140.6 8.8 79 25-108 13-93 (105)
53 2hvz_A Splicing factor, argini 99.7 1.5E-18 5.3E-23 142.4 6.7 100 29-140 1-100 (101)
54 2la6_A RNA-binding protein FUS 99.7 8.8E-18 3E-22 137.4 11.2 81 25-105 10-99 (99)
55 2x1f_A MRNA 3'-END-processing 99.7 5.8E-18 2E-22 137.6 10.1 83 28-110 2-85 (96)
56 2dhg_A TRNA selenocysteine ass 99.7 5.4E-18 1.8E-22 139.9 10.0 84 26-109 7-92 (104)
57 2dgv_A HnRNP M, heterogeneous 99.7 1E-17 3.4E-22 135.0 11.1 83 25-108 5-87 (92)
58 2jrs_A RNA-binding protein 39; 99.7 7.2E-18 2.5E-22 140.4 10.4 84 25-108 23-107 (108)
59 3ns6_A Eukaryotic translation 99.7 2E-18 6.8E-23 141.7 6.8 82 27-108 5-94 (100)
60 2do0_A HnRNP M, heterogeneous 99.7 1E-17 3.4E-22 140.6 11.0 83 25-107 12-94 (114)
61 2dgs_A DAZ-associated protein 99.7 8.4E-18 2.9E-22 137.5 10.2 83 25-108 7-90 (99)
62 3ulh_A THO complex subunit 4; 99.7 9.9E-18 3.4E-22 139.0 10.8 81 25-105 26-106 (107)
63 2cq0_A Eukaryotic translation 99.7 6.6E-18 2.3E-22 139.1 9.6 84 25-108 12-96 (103)
64 2dgo_A Cytotoxic granule-assoc 99.7 1E-17 3.5E-22 140.9 10.9 85 25-109 12-97 (115)
65 2cqc_A Arginine/serine-rich sp 99.7 9.6E-18 3.3E-22 135.8 10.3 82 25-106 12-94 (95)
66 1x5s_A Cold-inducible RNA-bind 99.7 5.2E-18 1.8E-22 139.5 8.6 84 25-108 9-93 (102)
67 1x5u_A Splicing factor 3B subu 99.7 6.7E-18 2.3E-22 139.6 9.2 84 25-108 12-96 (105)
68 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.6E-18 2.6E-22 151.1 10.1 139 74-214 11-156 (165)
69 1p1t_A Cleavage stimulation fa 99.7 1E-17 3.5E-22 138.1 10.1 86 26-111 6-92 (104)
70 2cpf_A RNA binding motif prote 99.7 9E-18 3.1E-22 137.0 9.4 83 26-108 3-89 (98)
71 1x5t_A Splicing factor 3B subu 99.7 4.1E-18 1.4E-22 138.4 7.3 83 26-108 3-87 (96)
72 2cq3_A RNA-binding protein 9; 99.7 1.6E-17 5.5E-22 136.8 10.7 83 25-108 12-94 (103)
73 2cph_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 138.6 9.7 84 25-108 12-98 (107)
74 2div_A TRNA selenocysteine ass 99.7 1.4E-17 4.9E-22 136.0 10.1 83 25-107 6-94 (99)
75 4f25_A Polyadenylate-binding p 99.7 7.9E-18 2.7E-22 141.8 8.7 83 131-214 5-87 (115)
76 2e5h_A Zinc finger CCHC-type a 99.7 7.7E-18 2.6E-22 136.2 8.2 81 25-105 13-94 (94)
77 2dnm_A SRP46 splicing factor; 99.7 7.4E-18 2.5E-22 138.8 8.1 84 25-108 10-94 (103)
78 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.8E-18 2E-22 139.1 7.1 84 25-108 9-93 (102)
79 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.3E-17 4.6E-22 137.3 9.2 83 25-108 12-94 (103)
80 1x4h_A RNA-binding protein 28; 99.7 8.5E-18 2.9E-22 140.3 8.1 85 25-109 12-103 (111)
81 3ucg_A Polyadenylate-binding p 99.7 1.6E-17 5.3E-22 132.9 9.2 80 27-107 5-85 (89)
82 1x4e_A RNA binding motif, sing 99.7 5.7E-18 1.9E-22 134.4 6.4 80 26-105 3-83 (85)
83 2dgp_A Bruno-like 4, RNA bindi 99.7 1.1E-17 3.9E-22 138.4 8.5 84 25-108 10-97 (106)
84 2kxn_B Transformer-2 protein h 99.7 1.3E-17 4.3E-22 143.5 9.0 84 25-108 43-127 (129)
85 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-17 4.2E-22 139.2 8.6 84 25-108 23-107 (110)
86 1u6f_A Tcubp1, RNA-binding pro 99.7 1.2E-17 4.2E-22 145.3 8.9 85 25-109 39-124 (139)
87 4a8x_A RNA-binding protein wit 99.7 8.6E-18 2.9E-22 134.0 7.3 81 27-107 3-85 (88)
88 2mss_A Protein (musashi1); RNA 99.7 7.3E-18 2.5E-22 130.4 6.6 74 30-104 1-75 (75)
89 3r27_A HnRNP L, heterogeneous 99.7 1.4E-17 4.7E-22 135.7 8.4 78 25-107 18-97 (100)
90 3s7r_A Heterogeneous nuclear r 99.7 2.7E-17 9.3E-22 131.0 9.9 79 25-104 8-87 (87)
91 2dgw_A Probable RNA-binding pr 99.7 2.1E-17 7.2E-22 132.9 9.2 82 25-108 7-88 (91)
92 2lea_A Serine/arginine-rich sp 99.7 6.3E-18 2.1E-22 146.6 6.5 121 71-210 6-127 (135)
93 2cpe_A RNA-binding protein EWS 99.7 1.2E-17 4E-22 140.1 7.9 85 25-109 12-105 (113)
94 2khc_A Testis-specific RNP-typ 99.7 9.4E-18 3.2E-22 141.7 7.4 81 25-105 37-118 (118)
95 2kt5_A RNA and export factor-b 99.7 2E-17 7E-22 141.0 9.4 83 25-107 32-114 (124)
96 2dgx_A KIAA0430 protein; RRM d 99.7 1.4E-17 4.9E-22 135.4 8.0 81 26-108 7-91 (96)
97 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.1E-18 2.4E-22 138.3 6.1 81 25-107 16-98 (100)
98 2dh8_A DAZ-associated protein 99.7 1.8E-17 6.1E-22 137.0 8.4 84 25-109 13-97 (105)
99 1x5o_A RNA binding motif, sing 99.7 4.5E-17 1.5E-21 136.7 11.0 83 25-107 22-112 (114)
100 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.6E-22 135.1 7.4 81 26-106 13-94 (95)
101 2db1_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 140.7 7.9 82 26-108 15-99 (118)
102 2cqp_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 136.2 7.1 83 25-107 12-95 (98)
103 2err_A Ataxin-2-binding protei 99.7 1.4E-17 4.8E-22 138.9 7.6 82 25-107 26-107 (109)
104 2dng_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 135.0 9.7 82 25-108 12-94 (103)
105 2hgl_A HNRPF protein, heteroge 99.7 1.6E-17 5.6E-22 143.8 8.1 81 26-107 42-125 (136)
106 1wez_A HnRNP H', FTP-3, hetero 99.7 2.1E-17 7.1E-22 136.1 8.3 81 25-107 12-92 (102)
107 1x4d_A Matrin 3; structural ge 99.7 8.8E-18 3E-22 138.0 5.8 78 26-108 13-93 (102)
108 2cpy_A RNA-binding protein 12; 99.7 9.6E-18 3.3E-22 141.0 6.1 85 25-110 12-97 (114)
109 4f02_A Polyadenylate-binding p 99.7 5E-17 1.7E-21 151.8 11.6 107 3-114 82-188 (213)
110 1wg5_A Heterogeneous nuclear r 99.7 2.3E-17 7.9E-22 136.3 8.1 81 26-107 13-94 (104)
111 2lkz_A RNA-binding protein 5; 99.7 1.8E-17 6.3E-22 134.5 7.4 78 132-209 10-94 (95)
112 1x4a_A Splicing factor, argini 99.7 4.4E-17 1.5E-21 135.6 9.8 82 25-108 19-100 (109)
113 3md1_A Nuclear and cytoplasmic 99.7 7.8E-17 2.7E-21 127.0 10.8 79 132-210 2-81 (83)
114 2cq4_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 139.5 7.1 83 26-109 23-106 (114)
115 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-17 8E-22 129.9 7.6 74 27-105 6-79 (89)
116 2ki2_A SS-DNA binding protein 99.7 6.1E-18 2.1E-22 135.7 4.4 81 28-109 1-82 (90)
117 2krb_A Eukaryotic translation 99.7 1.4E-17 4.6E-22 131.1 6.3 73 29-102 2-81 (81)
118 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-17 3.7E-22 130.0 5.7 75 29-104 1-76 (77)
119 2lxi_A RNA-binding protein 10; 99.7 1.4E-17 4.9E-22 134.1 6.4 79 132-210 2-83 (91)
120 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.7E-17 3E-21 127.9 10.9 81 130-210 5-86 (87)
121 2m2b_A RNA-binding protein 10; 99.7 9.9E-18 3.4E-22 144.5 5.8 82 25-107 20-108 (131)
122 2cpi_A CCR4-NOT transcription 99.7 2E-17 6.9E-22 138.3 7.5 83 26-108 13-102 (111)
123 3ex7_B RNA-binding protein 8A; 99.7 3.6E-17 1.2E-21 139.8 9.2 85 25-109 19-104 (126)
124 2cqd_A RNA-binding region cont 99.7 2.6E-17 8.9E-22 138.6 8.1 82 25-107 14-96 (116)
125 2dha_A FLJ20171 protein; RRM d 99.7 2.7E-17 9.4E-22 139.8 8.0 82 25-107 20-105 (123)
126 2a3j_A U1 small nuclear ribonu 99.7 5.8E-17 2E-21 138.7 10.1 84 26-111 27-114 (127)
127 1wi8_A EIF-4B, eukaryotic tran 99.7 2.3E-17 7.8E-22 136.2 7.1 83 25-109 12-96 (104)
128 2ad9_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 137.8 8.4 79 25-108 28-108 (119)
129 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.2E-17 2.8E-21 142.9 11.0 83 26-108 37-120 (156)
130 3ns6_A Eukaryotic translation 99.7 4.1E-17 1.4E-21 133.8 8.3 82 131-212 6-95 (100)
131 2cqg_A TDP-43, TAR DNA-binding 99.7 8.7E-17 3E-21 132.4 10.2 83 25-109 12-95 (103)
132 2dnn_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 136.1 8.0 78 28-107 16-93 (109)
133 2do4_A Squamous cell carcinoma 99.7 1.1E-16 3.9E-21 130.9 10.7 82 129-210 15-96 (100)
134 2cq1_A PTB-like protein L; RRM 99.7 6.5E-17 2.2E-21 132.7 8.9 78 26-108 13-92 (101)
135 2nlw_A Eukaryotic translation 99.7 3E-17 1E-21 135.9 6.9 81 26-107 13-100 (105)
136 3q2s_C Cleavage and polyadenyl 99.7 5.8E-17 2E-21 153.1 9.7 83 27-109 67-152 (229)
137 1wex_A Hypothetical protein (r 99.7 6.2E-17 2.1E-21 133.6 8.6 78 26-108 13-92 (104)
138 1whw_A Hypothetical protein ri 99.7 1.4E-16 4.7E-21 130.1 10.5 82 130-211 7-89 (99)
139 2dis_A Unnamed protein product 99.7 4.3E-17 1.5E-21 135.6 7.6 84 26-109 6-94 (109)
140 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4.2E-21 126.5 9.9 79 130-208 6-85 (85)
141 2ywk_A Putative RNA-binding pr 99.7 1.3E-16 4.5E-21 129.1 10.3 80 130-209 15-94 (95)
142 1wel_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 139.6 7.2 84 25-109 22-106 (124)
143 2la4_A Nuclear and cytoplasmic 99.7 8.8E-17 3E-21 131.9 9.3 77 25-106 24-100 (101)
144 1s79_A Lupus LA protein; RRM, 99.7 9.1E-17 3.1E-21 132.4 9.3 84 130-214 10-93 (103)
145 2rs2_A Musashi-1, RNA-binding 99.7 3.3E-17 1.1E-21 136.6 6.6 83 25-108 22-105 (109)
146 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-17 8.1E-22 136.9 5.8 83 25-108 8-93 (107)
147 2kn4_A Immunoglobulin G-bindin 99.7 3.1E-17 1.1E-21 145.8 6.9 83 26-108 68-151 (158)
148 3n9u_C Cleavage and polyadenyl 99.7 2.1E-16 7.1E-21 140.3 12.2 85 131-215 55-142 (156)
149 3p5t_L Cleavage and polyadenyl 99.7 3E-17 1E-21 131.9 6.0 80 132-211 2-84 (90)
150 1x4b_A Heterogeneous nuclear r 99.7 5.1E-17 1.7E-21 136.8 7.7 83 26-109 25-108 (116)
151 2jwn_A Embryonic polyadenylate 99.7 6.9E-17 2.4E-21 137.6 8.6 81 26-107 34-115 (124)
152 2x1f_A MRNA 3'-END-processing 99.7 1.8E-16 6.2E-21 128.7 10.7 83 131-213 2-85 (96)
153 2fc9_A NCL protein; structure 99.7 5.3E-17 1.8E-21 133.2 7.4 81 25-108 12-92 (101)
154 2dnq_A RNA-binding protein 4B; 99.7 1.7E-16 5.8E-21 127.3 10.1 78 25-109 5-82 (90)
155 2d9p_A Polyadenylate-binding p 99.7 9.3E-17 3.2E-21 132.2 8.8 84 127-211 11-94 (103)
156 2wbr_A GW182, gawky, LD47780P; 99.7 2.2E-16 7.6E-21 124.3 10.1 75 131-210 7-81 (89)
157 1x4f_A Matrin 3; structural ge 99.7 3.4E-17 1.2E-21 136.5 5.8 79 25-108 22-103 (112)
158 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.2E-21 128.3 10.0 81 130-210 4-85 (95)
159 2qfj_A FBP-interacting repress 99.7 3.3E-16 1.1E-20 145.8 13.2 107 2-108 94-206 (216)
160 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 145.1 11.2 108 2-110 78-186 (196)
161 2dnh_A Bruno-like 5, RNA bindi 99.7 1.6E-16 5.6E-21 131.1 9.6 82 130-211 14-98 (105)
162 3ulh_A THO complex subunit 4; 99.7 2.9E-16 9.8E-21 130.1 11.1 81 128-208 26-106 (107)
163 2fy1_A RNA-binding motif prote 99.7 1.5E-16 5E-21 134.2 9.4 81 130-210 6-86 (116)
164 2cpz_A CUG triplet repeat RNA- 99.7 1.8E-16 6E-21 133.3 9.8 81 130-210 24-105 (115)
165 2jvr_A Nucleolar protein 3; RN 99.7 5.1E-17 1.8E-21 135.6 6.4 79 26-107 26-105 (111)
166 1nu4_A U1A RNA binding domain; 99.7 4.8E-17 1.6E-21 132.3 6.0 84 25-110 5-92 (97)
167 1sjq_A Polypyrimidine tract-bi 99.7 9.8E-17 3.3E-21 131.9 7.9 79 128-211 13-93 (105)
168 3pgw_S U1-70K; protein-RNA com 99.7 2.2E-17 7.4E-22 170.4 4.9 162 45-210 9-182 (437)
169 2e5h_A Zinc finger CCHC-type a 99.7 3E-16 1E-20 126.8 10.6 79 130-208 15-94 (94)
170 2cpy_A RNA-binding protein 12; 99.7 1.5E-16 5E-21 133.7 9.0 86 130-216 14-100 (114)
171 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-16 7.4E-21 141.6 10.6 85 26-110 70-155 (165)
172 3md3_A Nuclear and cytoplasmic 99.7 3.1E-16 1E-20 139.5 11.5 101 2-106 65-166 (166)
173 2cq0_A Eukaryotic translation 99.7 2.1E-16 7.1E-21 130.1 9.6 83 128-210 12-95 (103)
174 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-16 3.8E-21 139.1 8.4 80 25-104 60-140 (140)
175 2xs2_A Deleted in azoospermia- 99.7 6.9E-17 2.4E-21 132.7 6.7 82 26-109 7-88 (102)
176 2cqc_A Arginine/serine-rich sp 99.7 3.5E-16 1.2E-20 126.5 10.8 81 129-209 13-94 (95)
177 2dgo_A Cytotoxic granule-assoc 99.7 3.3E-16 1.1E-20 131.5 10.9 82 129-210 13-95 (115)
178 1iqt_A AUF1, heterogeneous nuc 99.7 4E-17 1.4E-21 126.2 4.8 74 30-104 1-75 (75)
179 2cq3_A RNA-binding protein 9; 99.7 4.1E-16 1.4E-20 128.3 11.3 82 128-210 12-93 (103)
180 2do0_A HnRNP M, heterogeneous 99.7 3.6E-16 1.2E-20 131.0 11.1 81 130-210 14-94 (114)
181 1x5t_A Splicing factor 3B subu 99.7 1.6E-16 5.3E-21 129.0 8.6 82 130-211 4-87 (96)
182 3r27_A HnRNP L, heterogeneous 99.7 1.7E-16 5.8E-21 129.2 8.7 78 128-210 18-97 (100)
183 1why_A Hypothetical protein ri 99.7 2E-16 6.9E-21 128.7 9.2 79 25-108 14-94 (97)
184 2dgx_A KIAA0430 protein; RRM d 99.7 2.9E-16 9.9E-21 127.6 10.1 79 130-210 8-90 (96)
185 2jvo_A Nucleolar protein 3; nu 99.7 2.4E-16 8.1E-21 131.1 9.7 78 25-109 28-105 (108)
186 1x4c_A Splicing factor, argini 99.7 1.7E-16 5.7E-21 132.0 8.6 77 26-108 13-94 (108)
187 3q2s_C Cleavage and polyadenyl 99.7 1.4E-16 4.9E-21 150.4 9.0 86 130-215 67-155 (229)
188 1oo0_B CG8781-PA, drosophila Y 99.7 2E-16 6.8E-21 131.8 8.9 84 128-211 23-107 (110)
189 2cpj_A Non-POU domain-containi 99.7 1.6E-16 5.5E-21 129.8 8.2 78 26-108 13-90 (99)
190 1x4g_A Nucleolysin TIAR; struc 99.7 2.8E-16 9.7E-21 130.7 9.7 79 25-108 22-100 (109)
191 1p27_B RNA-binding protein 8A; 99.7 3.1E-16 1.1E-20 129.7 9.9 82 129-210 21-103 (106)
192 1x5u_A Splicing factor 3B subu 99.7 2.6E-16 8.8E-21 129.9 9.3 83 129-211 13-96 (105)
193 2lea_A Serine/arginine-rich sp 99.7 5.2E-17 1.8E-21 140.7 5.3 83 26-108 45-128 (135)
194 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.4E-16 1.9E-20 127.6 11.2 82 129-211 13-94 (103)
195 2dgs_A DAZ-associated protein 99.7 3.7E-16 1.3E-20 127.6 10.0 81 129-210 8-89 (99)
196 2e5j_A Methenyltetrahydrofolat 99.7 2.3E-16 7.9E-21 128.4 8.7 80 25-108 16-95 (97)
197 2la6_A RNA-binding protein FUS 99.7 3.4E-16 1.2E-20 127.9 9.6 80 129-208 11-99 (99)
198 2db1_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 132.2 10.1 83 130-213 16-101 (118)
199 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.7E-16 9.4E-21 129.1 9.1 81 130-210 11-92 (102)
200 2g4b_A Splicing factor U2AF 65 99.7 3.4E-16 1.2E-20 140.4 10.5 98 2-105 74-172 (172)
201 2cph_A RNA binding motif prote 99.7 3.5E-16 1.2E-20 129.5 9.8 83 128-210 12-97 (107)
202 1whx_A Hypothetical protein ri 99.7 1.3E-16 4.5E-21 133.4 7.3 77 26-107 8-84 (111)
203 2ytc_A PRE-mRNA-splicing facto 99.7 2.1E-16 7.1E-21 125.2 8.0 76 25-105 9-85 (85)
204 1fj7_A Nucleolin RBD1, protein 99.7 1.8E-17 6.1E-22 136.0 1.8 81 26-108 15-96 (101)
205 2cpf_A RNA binding motif prote 99.6 2.7E-16 9.4E-21 128.1 8.8 81 130-210 4-88 (98)
206 2hgn_A Heterogeneous nuclear r 99.6 5.1E-17 1.7E-21 141.1 4.5 82 26-109 44-125 (139)
207 2xnq_A Nuclear polyadenylated 99.6 4.9E-16 1.7E-20 126.6 9.9 76 25-107 19-95 (97)
208 2err_A Ataxin-2-binding protei 99.6 3.2E-16 1.1E-20 130.5 8.9 82 128-210 26-107 (109)
209 2dhg_A TRNA selenocysteine ass 99.6 1.9E-16 6.6E-21 130.4 7.5 82 129-210 7-90 (104)
210 2khc_A Testis-specific RNP-typ 99.6 3.1E-16 1.1E-20 132.4 8.8 81 128-208 37-118 (118)
211 3ucg_A Polyadenylate-binding p 99.6 5.4E-16 1.8E-20 123.9 9.7 79 131-210 6-85 (89)
212 1p1t_A Cleavage stimulation fa 99.6 3.2E-16 1.1E-20 129.0 8.7 86 131-216 8-94 (104)
213 2fc8_A NCL protein; structure 99.6 3.3E-16 1.1E-20 128.6 8.7 82 25-109 12-94 (102)
214 2jwn_A Embryonic polyadenylate 99.6 3.4E-16 1.2E-20 133.3 9.1 77 132-209 37-114 (124)
215 2f3j_A RNA and export factor b 99.6 2.8E-16 9.5E-21 142.5 9.0 83 26-108 86-168 (177)
216 1x5s_A Cold-inducible RNA-bind 99.6 3.1E-16 1E-20 128.8 8.4 82 130-211 11-93 (102)
217 2hgm_A HNRPF protein, heteroge 99.6 1.2E-16 4.2E-21 136.2 6.2 80 26-107 40-121 (126)
218 2lcw_A RNA-binding protein FUS 99.5 1.3E-17 4.4E-22 140.6 0.0 86 25-110 4-98 (116)
219 2cq4_A RNA binding motif prote 99.6 4.8E-16 1.6E-20 130.4 9.7 82 131-213 25-107 (114)
220 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-16 3.8E-21 129.9 5.4 80 25-108 13-92 (96)
221 1x4h_A RNA-binding protein 28; 99.6 6.4E-16 2.2E-20 128.8 10.2 82 129-210 13-101 (111)
222 2kt5_A RNA and export factor-b 99.6 5.9E-16 2E-20 131.9 10.1 82 129-210 33-114 (124)
223 2dnm_A SRP46 splicing factor; 99.6 3.1E-16 1.1E-20 129.0 8.0 82 129-210 11-93 (103)
224 2dgv_A HnRNP M, heterogeneous 99.6 4.2E-16 1.4E-20 125.4 8.5 80 130-210 7-86 (92)
225 2hgl_A HNRPF protein, heteroge 99.6 3.2E-16 1.1E-20 135.6 8.4 83 130-213 43-128 (136)
226 2kvi_A Nuclear polyadenylated 99.6 4.5E-16 1.5E-20 126.5 8.7 78 25-109 7-85 (96)
227 2cpx_A Hypothetical protein FL 99.6 2.5E-16 8.6E-21 132.2 7.4 83 26-108 23-106 (115)
228 2i2y_A Fusion protein consists 99.6 4.3E-16 1.5E-20 137.3 9.2 79 25-107 70-148 (150)
229 2cpe_A RNA-binding protein EWS 99.6 5.2E-16 1.8E-20 129.9 9.1 83 128-210 12-103 (113)
230 2dgw_A Probable RNA-binding pr 99.6 9.1E-16 3.1E-20 123.2 10.1 79 130-210 9-87 (91)
231 4a8x_A RNA-binding protein wit 99.6 2.6E-16 8.9E-21 125.4 6.7 81 130-210 3-85 (88)
232 2jrs_A RNA-binding protein 39; 99.6 4.9E-16 1.7E-20 129.2 8.5 81 130-210 25-106 (108)
233 2dnn_A RNA-binding protein 12; 99.6 1.3E-15 4.4E-20 126.8 11.0 80 131-212 16-95 (109)
234 1wi8_A EIF-4B, eukaryotic tran 99.6 6.9E-16 2.4E-20 127.2 9.3 81 129-211 13-95 (104)
235 2cpi_A CCR4-NOT transcription 99.6 5.7E-16 1.9E-20 129.4 8.9 83 128-210 12-101 (111)
236 2cqh_A IGF-II mRNA-binding pro 99.6 1.9E-16 6.5E-21 127.8 5.7 78 25-108 5-84 (93)
237 2div_A TRNA selenocysteine ass 99.6 6.6E-16 2.2E-20 126.0 9.0 81 130-210 8-94 (99)
238 1x4d_A Matrin 3; structural ge 99.6 2.9E-16 9.9E-21 128.9 6.8 76 130-210 14-92 (102)
239 3s7r_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 121.1 10.5 78 129-207 9-87 (87)
240 2dgu_A Heterogeneous nuclear r 99.6 4.6E-16 1.6E-20 128.1 8.0 77 26-109 9-85 (103)
241 2cjk_A Nuclear polyadenylated 99.6 2.4E-16 8.3E-21 140.6 6.7 99 2-107 67-166 (167)
242 2mss_A Protein (musashi1); RNA 99.6 3.5E-16 1.2E-20 120.9 6.7 74 133-207 1-75 (75)
243 2dgp_A Bruno-like 4, RNA bindi 99.6 5.9E-16 2E-20 128.0 8.4 82 129-210 11-96 (106)
244 2dgt_A RNA-binding protein 30; 99.6 6.9E-16 2.3E-20 124.3 8.5 77 25-108 7-83 (92)
245 2kxn_B Transformer-2 protein h 99.6 5.7E-16 2E-20 133.0 8.4 82 129-210 44-126 (129)
246 2cq2_A Hypothetical protein LO 99.6 2.5E-16 8.6E-21 131.4 6.0 77 25-106 22-105 (114)
247 2cq1_A PTB-like protein L; RRM 99.6 1.1E-15 3.6E-20 125.5 9.6 78 129-211 13-92 (101)
248 2yh0_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 140.3 10.7 107 2-108 74-195 (198)
249 1x4a_A Splicing factor, argini 99.6 1.3E-15 4.3E-20 126.7 10.1 80 129-210 20-99 (109)
250 1b7f_A Protein (SXL-lethal pro 99.6 2E-15 6.7E-20 134.7 12.1 97 2-104 69-168 (168)
251 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3E-16 1E-20 128.6 6.1 79 130-210 18-98 (100)
252 1u6f_A Tcubp1, RNA-binding pro 99.6 8.6E-16 2.9E-20 133.5 9.4 82 129-210 40-122 (139)
253 1wg1_A KIAA1579 protein, homol 99.6 5E-16 1.7E-20 124.1 7.2 76 26-107 3-78 (88)
254 3egn_A RNA-binding protein 40; 99.6 2.6E-16 9E-21 137.5 6.1 85 26-110 43-133 (143)
255 2dng_A Eukaryotic translation 99.6 1.3E-15 4.5E-20 125.3 9.8 80 129-210 13-93 (103)
256 2cqd_A RNA-binding region cont 99.6 1.3E-15 4.3E-20 128.2 9.9 82 128-210 14-96 (116)
257 3ex7_B RNA-binding protein 8A; 99.6 9.7E-16 3.3E-20 130.9 9.2 82 129-210 20-102 (126)
258 2ad9_A Polypyrimidine tract-bi 99.6 8.7E-16 3E-20 129.4 8.5 78 129-211 29-108 (119)
259 2dnp_A RNA-binding protein 14; 99.6 8.7E-16 3E-20 123.1 8.2 77 25-108 6-82 (90)
260 2a3j_A U1 small nuclear ribonu 99.6 8.8E-16 3E-20 131.3 8.7 84 129-214 27-114 (127)
261 3nmr_A Cugbp ELAV-like family 99.6 1.2E-15 4.3E-20 136.8 10.1 80 26-105 93-175 (175)
262 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 134.5 10.3 79 26-107 44-124 (164)
263 1x5o_A RNA binding motif, sing 99.6 1.2E-15 4.2E-20 127.8 9.2 81 130-210 24-112 (114)
264 1fje_B Nucleolin RBD12, protei 99.6 8.6E-16 3E-20 138.3 8.8 98 2-107 77-174 (175)
265 1fxl_A Paraneoplastic encephal 99.6 3.3E-15 1.1E-19 132.8 12.5 97 2-104 68-167 (167)
266 2cqp_A RNA-binding protein 12; 99.6 6E-16 2.1E-20 126.0 6.8 81 130-210 14-95 (98)
267 2cpd_A Apobec-1 stimulating pr 99.6 1.6E-15 5.4E-20 123.9 9.3 77 25-108 12-90 (99)
268 1wf1_A RNA-binding protein RAL 99.6 1.1E-15 3.7E-20 127.4 8.4 75 26-107 25-100 (110)
269 2lmi_A GRSF-1, G-rich sequence 99.6 4.7E-16 1.6E-20 129.1 6.1 84 129-213 9-95 (107)
270 1wg5_A Heterogeneous nuclear r 99.6 9.8E-16 3.4E-20 126.4 8.0 81 129-210 13-94 (104)
271 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.8E-20 126.8 8.9 79 130-211 27-106 (111)
272 3d2w_A TAR DNA-binding protein 99.6 9.4E-16 3.2E-20 122.8 7.6 77 25-109 8-86 (89)
273 2nlw_A Eukaryotic translation 99.6 8.9E-16 3E-20 126.9 7.6 80 130-210 14-100 (105)
274 2krb_A Eukaryotic translation 99.6 4.6E-16 1.6E-20 122.2 5.6 72 132-204 2-80 (81)
275 2m2b_A RNA-binding protein 10; 99.6 3.1E-16 1.1E-20 135.0 5.0 81 129-210 21-108 (131)
276 1uaw_A Mouse-musashi-1; RNP-ty 99.6 6.6E-16 2.3E-20 119.8 6.3 75 132-207 1-76 (77)
277 2rs2_A Musashi-1, RNA-binding 99.6 2.1E-15 7.2E-20 125.6 9.8 81 130-211 24-105 (109)
278 2ek1_A RNA-binding protein 12; 99.6 7.5E-16 2.6E-20 124.6 6.8 80 130-209 14-94 (95)
279 2e5g_A U6 snRNA-specific termi 99.6 1.7E-15 5.9E-20 122.5 8.9 77 26-107 6-82 (94)
280 2fc9_A NCL protein; structure 99.6 2.1E-15 7.1E-20 123.6 9.4 78 130-210 14-91 (101)
281 2dh8_A DAZ-associated protein 99.6 1.1E-15 3.6E-20 126.3 7.6 82 129-211 14-96 (105)
282 1x4e_A RNA binding motif, sing 99.6 3.4E-16 1.2E-20 124.0 4.3 79 130-208 4-83 (85)
283 1x5p_A Negative elongation fac 99.6 2E-15 6.9E-20 122.8 8.9 76 26-108 13-88 (97)
284 1wez_A HnRNP H', FTP-3, hetero 99.6 9.2E-16 3.1E-20 126.2 6.7 80 129-210 13-92 (102)
285 2ki2_A SS-DNA binding protein 99.6 4.1E-16 1.4E-20 124.9 4.5 80 132-212 2-82 (90)
286 2j8a_A Histone-lysine N-methyl 99.6 8.9E-16 3.1E-20 128.9 6.7 81 29-109 3-98 (136)
287 3lqv_A PRE-mRNA branch site pr 99.6 3.3E-15 1.1E-19 125.4 10.2 79 130-210 7-85 (115)
288 1wex_A Hypothetical protein (r 99.6 1.5E-15 5.1E-20 125.3 7.9 77 130-211 14-92 (104)
289 2diu_A KIAA0430 protein; struc 99.6 2.3E-15 7.8E-20 119.7 8.5 74 27-109 8-86 (96)
290 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-15 5.3E-20 129.0 8.2 85 130-215 22-110 (123)
291 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.5E-15 1.2E-19 132.4 10.8 81 130-210 38-119 (156)
292 2e44_A Insulin-like growth fac 99.6 2E-15 6.7E-20 122.5 8.3 79 26-107 13-92 (96)
293 1x4b_A Heterogeneous nuclear r 99.6 2.4E-15 8.2E-20 126.5 9.0 79 131-210 27-106 (116)
294 1x4c_A Splicing factor, argini 99.6 4.3E-15 1.5E-19 123.4 10.3 75 130-210 14-93 (108)
295 1nu4_A U1A RNA binding domain; 99.6 1.5E-15 5E-20 123.4 7.2 82 130-213 7-92 (97)
296 2cqg_A TDP-43, TAR DNA-binding 99.6 5.6E-15 1.9E-19 121.4 10.7 81 129-211 13-94 (103)
297 3beg_B Splicing factor, argini 99.6 1.5E-15 5.2E-20 127.7 7.3 70 26-101 14-83 (115)
298 2dis_A Unnamed protein product 99.6 2.4E-15 8.1E-20 125.0 8.3 82 130-211 7-93 (109)
299 2la4_A Nuclear and cytoplasmic 99.6 1.9E-15 6.6E-20 123.8 7.6 76 130-210 26-101 (101)
300 2ytc_A PRE-mRNA-splicing facto 99.6 4.6E-15 1.6E-19 117.4 9.5 75 129-208 10-85 (85)
301 1wel_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 128.6 7.8 84 130-214 24-108 (124)
302 1why_A Hypothetical protein ri 99.6 4E-15 1.4E-19 121.0 9.1 76 130-210 16-93 (97)
303 1x4f_A Matrin 3; structural ge 99.6 1.1E-15 3.6E-20 127.4 5.6 77 130-211 24-103 (112)
304 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.1E-15 1.7E-19 128.5 10.2 78 130-207 62-140 (140)
305 2pe8_A Splicing factor 45; RRM 99.6 7.7E-15 2.6E-19 121.2 10.7 82 25-106 5-93 (105)
306 1x4g_A Nucleolysin TIAR; struc 99.6 4.9E-15 1.7E-19 123.2 9.5 77 129-210 23-99 (109)
307 2jvo_A Nucleolar protein 3; nu 99.6 3.8E-15 1.3E-19 123.8 8.6 78 128-212 28-105 (108)
308 2hvz_A Splicing factor, argini 99.6 2E-15 6.9E-20 123.7 6.8 76 132-211 1-76 (101)
309 2dnq_A RNA-binding protein 4B; 99.6 5.7E-15 1.9E-19 118.3 9.2 74 130-210 7-80 (90)
310 1whx_A Hypothetical protein ri 99.6 3.6E-15 1.2E-19 124.6 8.2 76 130-210 9-84 (111)
311 2xnq_A Nuclear polyadenylated 99.6 8.8E-15 3E-19 119.1 10.3 74 130-210 21-95 (97)
312 3zzy_A Polypyrimidine tract-bi 99.6 5.7E-15 2E-19 126.0 9.6 78 26-107 26-106 (130)
313 2cpj_A Non-POU domain-containi 99.6 3.4E-15 1.2E-19 121.9 7.8 77 129-210 13-89 (99)
314 2hzc_A Splicing factor U2AF 65 99.6 2.6E-15 8.9E-20 119.3 6.9 72 26-103 4-86 (87)
315 2voo_A Lupus LA protein; RNA-b 99.6 5.4E-15 1.8E-19 135.9 9.9 82 27-109 108-189 (193)
316 2cq2_A Hypothetical protein LO 99.6 4.3E-15 1.5E-19 123.9 7.8 77 129-210 23-106 (114)
317 2e5i_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 123.6 10.3 77 27-108 24-103 (124)
318 2dgt_A RNA-binding protein 30; 99.6 1.2E-14 4E-19 117.0 10.0 75 129-210 8-82 (92)
319 2bz2_A Negative elongation fac 99.6 6E-15 2.1E-19 125.2 8.7 78 25-109 36-113 (121)
320 2xs2_A Deleted in azoospermia- 99.6 3E-15 1E-19 122.8 6.6 81 130-212 8-88 (102)
321 1iqt_A AUF1, heterogeneous nuc 99.6 1.9E-15 6.6E-20 116.6 4.9 74 133-207 1-75 (75)
322 3pgw_S U1-70K; protein-RNA com 99.6 5.5E-15 1.9E-19 152.4 9.8 82 27-108 101-183 (437)
323 2e5j_A Methenyltetrahydrofolat 99.6 5.8E-15 2E-19 120.0 7.7 77 130-210 18-94 (97)
324 2hgm_A HNRPF protein, heteroge 99.6 3.8E-15 1.3E-19 127.0 6.6 80 130-211 41-122 (126)
325 2f3j_A RNA and export factor b 99.6 6.8E-15 2.3E-19 133.3 8.7 82 129-210 86-167 (177)
326 2dnp_A RNA-binding protein 14; 99.6 1.3E-14 4.4E-19 116.2 9.3 75 129-210 7-81 (90)
327 2dnl_A Cytoplasmic polyadenyla 99.5 3.9E-15 1.3E-19 124.9 6.1 77 26-105 6-86 (114)
328 1fjc_A Nucleolin RBD2, protein 99.5 5.4E-15 1.9E-19 119.8 6.7 77 130-210 15-91 (96)
329 2hgn_A Heterogeneous nuclear r 99.5 1.9E-15 6.4E-20 131.2 3.9 123 70-211 2-124 (139)
330 3d2w_A TAR DNA-binding protein 99.5 2.5E-14 8.5E-19 114.5 9.8 76 129-212 9-86 (89)
331 2dgu_A Heterogeneous nuclear r 99.5 2E-14 6.9E-19 118.1 9.5 75 130-211 10-84 (103)
332 2cpx_A Hypothetical protein FL 99.5 8.6E-15 2.9E-19 122.8 7.3 79 130-211 24-106 (115)
333 2fc8_A NCL protein; structure 99.5 2E-14 6.9E-19 117.8 9.3 80 129-211 13-93 (102)
334 2lcw_A RNA-binding protein FUS 99.3 5.8E-16 2E-20 130.3 0.0 84 130-213 6-98 (116)
335 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 128.0 9.0 76 132-210 47-124 (164)
336 1wg1_A KIAA1579 protein, homol 99.5 1.6E-14 5.4E-19 115.3 8.3 74 131-210 5-78 (88)
337 2j8a_A Histone-lysine N-methyl 99.5 1.5E-14 5E-19 121.5 8.4 80 132-211 3-97 (136)
338 2kvi_A Nuclear polyadenylated 99.5 1.2E-14 4E-19 118.1 7.5 75 130-211 9-84 (96)
339 3zzy_A Polypyrimidine tract-bi 99.5 2.9E-14 1E-18 121.6 10.3 75 132-210 29-106 (130)
340 1wf0_A TDP-43, TAR DNA-binding 99.5 2.8E-15 9.6E-20 119.6 3.5 77 26-108 3-79 (88)
341 2cqh_A IGF-II mRNA-binding pro 99.5 1E-14 3.5E-19 117.5 6.9 75 130-210 7-83 (93)
342 1fj7_A Nucleolin RBD1, protein 99.5 1.6E-15 5.5E-20 124.3 1.9 80 130-211 16-96 (101)
343 2pe8_A Splicing factor 45; RRM 99.5 6.9E-14 2.4E-18 115.5 11.5 82 130-211 7-95 (105)
344 1wf1_A RNA-binding protein RAL 99.5 1.8E-14 6.3E-19 119.9 8.0 74 130-210 26-100 (110)
345 3egn_A RNA-binding protein 40; 99.5 1.2E-14 4E-19 127.0 6.7 83 128-210 42-130 (143)
346 1x5p_A Negative elongation fac 99.5 5.6E-14 1.9E-18 114.2 10.0 75 129-210 13-87 (97)
347 3u1l_A PRE-mRNA-splicing facto 99.5 2E-14 6.9E-19 135.5 7.9 81 25-110 131-232 (240)
348 2voo_A Lupus LA protein; RNA-b 99.5 8.1E-14 2.8E-18 128.0 11.7 123 78-212 63-189 (193)
349 3tyt_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 131.1 9.9 77 130-210 3-80 (205)
350 2cpd_A Apobec-1 stimulating pr 99.5 7.8E-14 2.7E-18 113.7 10.2 74 130-210 14-89 (99)
351 3beg_B Splicing factor, argini 99.5 3.6E-14 1.2E-18 119.2 8.1 74 130-209 15-93 (115)
352 2e44_A Insulin-like growth fac 99.5 4.8E-14 1.6E-18 114.2 7.9 78 130-210 14-92 (96)
353 2diu_A KIAA0430 protein; struc 99.5 4E-14 1.4E-18 112.5 7.0 70 132-210 10-84 (96)
354 2e5i_A Heterogeneous nuclear r 99.5 8.5E-14 2.9E-18 118.1 9.5 74 132-210 26-102 (124)
355 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.8E-19 120.0 3.7 72 33-104 20-103 (104)
356 3sde_A Paraspeckle component 1 99.5 1.2E-13 4.2E-18 132.9 11.4 82 26-107 94-179 (261)
357 3pgw_A U1-A; protein-RNA compl 99.5 8E-13 2.8E-17 128.3 17.1 81 129-211 7-91 (282)
358 2e5g_A U6 snRNA-specific termi 99.5 7.2E-14 2.5E-18 112.8 7.7 75 131-210 8-82 (94)
359 2hzc_A Splicing factor U2AF 65 99.5 1.5E-13 5.1E-18 109.0 8.9 69 131-205 6-85 (87)
360 2dit_A HIV TAT specific factor 99.4 1.7E-13 5.7E-18 114.5 8.5 81 25-108 12-103 (112)
361 2bz2_A Negative elongation fac 99.4 1.5E-13 5.3E-18 116.4 8.4 76 129-211 37-112 (121)
362 3ue2_A Poly(U)-binding-splicin 99.4 1.7E-13 5.9E-18 115.4 8.6 81 26-106 18-108 (118)
363 2adc_A Polypyrimidine tract-bi 99.4 2.2E-13 7.6E-18 128.4 9.8 77 27-107 150-228 (229)
364 1qm9_A Polypyrimidine tract-bi 99.4 1.7E-13 6E-18 125.8 8.5 77 27-107 119-197 (198)
365 3u1l_A PRE-mRNA-splicing facto 99.4 1.8E-13 6.1E-18 129.0 8.6 82 129-215 132-234 (240)
366 3v4m_A Splicing factor U2AF 65 99.4 1.4E-13 4.7E-18 113.6 6.8 81 26-106 3-96 (105)
367 2dnl_A Cytoplasmic polyadenyla 99.4 1.9E-13 6.6E-18 114.5 7.8 76 130-208 7-86 (114)
368 1wf0_A TDP-43, TAR DNA-binding 99.4 1E-13 3.4E-18 110.5 5.3 75 130-210 4-78 (88)
369 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4.1E-18 113.9 5.7 71 137-207 21-103 (104)
370 3v4m_A Splicing factor U2AF 65 99.4 6.4E-13 2.2E-17 109.7 9.6 81 131-211 5-98 (105)
371 2dit_A HIV TAT specific factor 99.4 2.3E-12 7.9E-17 107.5 9.9 79 129-210 13-102 (112)
372 3ue2_A Poly(U)-binding-splicin 99.3 2.4E-12 8E-17 108.4 8.8 81 130-210 19-109 (118)
373 2d9o_A DNAJ (HSP40) homolog, s 99.3 9.3E-12 3.2E-16 101.5 10.4 65 38-108 27-91 (100)
374 3tht_A Alkylated DNA repair pr 99.3 2.4E-12 8.3E-17 127.6 7.1 76 25-105 15-97 (345)
375 3s6e_A RNA-binding protein 39; 99.2 3.9E-11 1.3E-15 100.2 10.4 79 131-212 7-95 (114)
376 3tht_A Alkylated DNA repair pr 99.2 1.7E-11 5.9E-16 121.6 8.9 75 129-208 16-97 (345)
377 3s6e_A RNA-binding protein 39; 99.2 1.3E-11 4.5E-16 103.1 5.8 77 27-106 6-92 (114)
378 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.9E-11 1.3E-15 97.8 7.3 64 141-210 27-90 (100)
379 1owx_A Lupus LA protein, SS-B, 99.0 9.7E-10 3.3E-14 92.1 9.4 84 126-214 13-100 (121)
380 1owx_A Lupus LA protein, SS-B, 99.0 2E-09 6.8E-14 90.2 10.1 80 26-110 16-99 (121)
381 2dnr_A Synaptojanin-1; RRM dom 98.9 1.1E-09 3.8E-14 86.2 5.6 73 27-107 6-86 (91)
382 2dnr_A Synaptojanin-1; RRM dom 98.9 3.1E-09 1.1E-13 83.6 8.1 72 130-209 6-85 (91)
383 3dxb_A Thioredoxin N-terminall 98.9 4.6E-09 1.6E-13 98.2 8.8 79 28-106 124-212 (222)
384 3dxb_A Thioredoxin N-terminall 98.8 7E-09 2.4E-13 96.9 9.5 70 142-211 140-214 (222)
385 1ufw_A Synaptojanin 2; RNP dom 98.7 4E-09 1.4E-13 83.3 3.3 72 26-105 13-93 (95)
386 1ufw_A Synaptojanin 2; RNP dom 98.7 1.9E-08 6.3E-13 79.6 5.6 72 129-208 13-93 (95)
387 2l9w_A U4/U6 snRNA-associated- 98.4 1.4E-06 4.7E-11 70.3 10.4 71 131-206 21-96 (117)
388 2l9w_A U4/U6 snRNA-associated- 98.3 1.4E-06 4.7E-11 70.2 8.0 73 27-104 20-97 (117)
389 2dhx_A Poly (ADP-ribose) polym 97.8 8.1E-05 2.8E-09 59.5 9.0 89 26-144 6-99 (104)
390 1wey_A Calcipressin 1; structu 97.6 0.00012 4.1E-09 58.8 6.8 72 132-208 6-82 (104)
391 1wey_A Calcipressin 1; structu 97.4 0.00012 4.3E-09 58.7 4.6 75 27-106 4-83 (104)
392 1uw4_A UPF3X; nonsense mediate 97.3 0.00086 2.9E-08 52.8 8.3 69 29-97 2-73 (91)
393 1whv_A Poly(A)-specific ribonu 97.0 0.0023 7.7E-08 50.5 7.2 56 27-90 15-70 (100)
394 1wwh_A Nucleoporin 35, nucleop 96.9 0.0018 6E-08 53.4 6.9 91 10-107 6-97 (119)
395 2dhx_A Poly (ADP-ribose) polym 96.8 0.0049 1.7E-07 49.2 8.3 69 130-206 7-80 (104)
396 3ctr_A Poly(A)-specific ribonu 96.8 0.0022 7.5E-08 50.8 5.7 52 31-90 9-60 (101)
397 1uw4_A UPF3X; nonsense mediate 96.6 0.0078 2.7E-07 47.3 8.0 68 132-199 2-72 (91)
398 1wwh_A Nucleoporin 35, nucleop 96.1 0.046 1.6E-06 44.9 10.0 75 130-211 23-98 (119)
399 1whv_A Poly(A)-specific ribonu 95.6 0.036 1.2E-06 43.7 7.0 54 133-193 17-70 (100)
400 2l08_A Regulator of nonsense t 95.6 0.0079 2.7E-07 47.6 3.3 70 28-97 9-81 (97)
401 3p3d_A Nucleoporin 53; structu 95.3 0.0081 2.8E-07 50.2 2.7 78 27-106 6-98 (132)
402 3pq1_A Poly(A) RNA polymerase; 95.1 0.0096 3.3E-07 60.9 3.2 58 26-88 51-108 (464)
403 3ctr_A Poly(A)-specific ribonu 94.5 0.042 1.4E-06 43.5 4.5 53 134-193 8-60 (101)
404 2l08_A Regulator of nonsense t 93.8 0.069 2.3E-06 42.2 4.7 68 132-199 10-80 (97)
405 3p3d_A Nucleoporin 53; structu 93.2 0.21 7E-06 41.7 6.7 75 133-209 9-98 (132)
406 3pq1_A Poly(A) RNA polymerase; 92.6 0.069 2.3E-06 54.6 3.7 55 132-191 54-108 (464)
407 3d45_A Poly(A)-specific ribonu 85.8 1.3 4.5E-05 45.9 7.1 56 28-91 440-495 (507)
408 3d45_A Poly(A)-specific ribonu 68.8 9.6 0.00033 39.3 7.4 53 134-194 443-495 (507)
409 2g0c_A ATP-dependent RNA helic 61.8 17 0.00058 26.6 5.7 59 39-105 12-75 (76)
410 1xn9_A 30S ribosomal protein S 57.9 8.1 0.00028 30.5 3.4 48 38-86 28-81 (101)
411 3j21_T 50S ribosomal protein L 55.7 23 0.00078 27.0 5.5 58 29-88 23-82 (86)
412 1ywx_A 30S ribosomal protein S 54.9 9.2 0.00031 30.3 3.2 46 38-84 28-79 (102)
413 2v94_A RPS24, 30S ribosomal pr 54.3 10 0.00035 30.3 3.4 47 38-85 37-89 (107)
414 3u5c_Y RP50, 40S ribosomal pro 46.4 19 0.00065 29.9 4.0 47 38-85 33-85 (135)
415 4e8u_A Putative uncharacterize 42.5 47 0.0016 28.8 6.0 49 31-81 15-74 (172)
416 2g1d_A 30S ribosomal protein S 41.9 8.7 0.0003 30.2 1.2 46 38-84 29-80 (98)
417 2xzm_P RPS24E; ribosome, trans 39.9 21 0.00074 30.1 3.4 47 38-85 31-83 (149)
418 1vq8_S 50S ribosomal protein L 38.4 33 0.0011 26.0 4.0 55 29-85 22-78 (85)
419 4a17_R RPL23A, 60S ribosomal p 36.0 52 0.0018 27.8 5.1 58 29-88 87-146 (150)
420 3u5e_X 60S ribosomal protein L 36.0 49 0.0017 27.7 4.9 58 29-88 79-138 (142)
421 2g0c_A ATP-dependent RNA helic 35.8 47 0.0016 24.0 4.5 60 141-208 11-75 (76)
422 2wx3_A MRNA-decapping enzyme 1 33.8 20 0.00068 24.3 1.7 21 423-443 18-38 (51)
423 2zkr_s 60S ribosomal protein L 28.3 67 0.0023 27.3 4.6 56 30-87 94-151 (156)
424 2wx4_A DCP1, decapping protein 27.6 19 0.00065 23.9 0.8 21 423-443 16-36 (46)
425 3iz5_X 60S ribosomal protein L 27.1 44 0.0015 28.3 3.2 55 30-86 90-146 (152)
426 4bby_A Alkyldihydroxyacetoneph 24.4 56 0.0019 34.7 4.3 56 35-90 350-409 (658)
427 2gle_A Neurabin-1; SAM domain, 22.9 78 0.0027 22.7 3.6 43 410-452 30-73 (74)
428 2ean_A Connector enhancer of k 22.3 96 0.0033 22.9 4.1 42 410-451 36-78 (83)
429 3ts2_A Protein LIN-28 homolog 22.2 19 0.00065 30.5 0.0 28 43-77 2-29 (148)
430 4e8u_A Putative uncharacterize 21.0 1.4E+02 0.0048 25.8 5.3 50 132-183 13-73 (172)
431 3cax_A Uncharacterized protein 20.7 57 0.0019 31.7 3.2 58 395-454 70-141 (369)
432 3bs5_B Connector enhancer of k 20.5 1.3E+02 0.0043 22.0 4.4 42 410-451 32-74 (80)
433 3r8s_T 50S ribosomal protein L 20.2 1.5E+02 0.0053 22.7 4.9 35 29-63 27-63 (93)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.2e-35 Score=277.07 Aligned_cols=175 Identities=34% Similarity=0.512 Sum_probs=158.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++||++|+++|++||+|.+|.|++| .+|+++|||||+|.+.++|.+|++.+|+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45789999999999999999999999999999999998 57999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~ 184 (472)
......... ...+|||+||+..+|+++|+++|+.||.|++|+|+++. +.++|||||+|.+.++
T Consensus 93 ~~~~~~~~~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLRKS----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHHHH----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHH
T ss_pred ccccccccc----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHH
Confidence 765432211 23479999999999999999999999999999999885 4579999999999999
Q ss_pred HHHHHHHhCCcEecCeeEEEEEcccHHHHHHHH
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 217 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~~~~ 217 (472)
|.+|++.|||..|+|++|.|.++..+.++....
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 999999999999999999999999987776544
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=253.24 Aligned_cols=165 Identities=30% Similarity=0.532 Sum_probs=152.4
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
++|||+|||.++|+++|+++|++||.|.++.++.+.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999989999999999999999999999999999999999999986543
Q ss_pred hHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHH
Q 012034 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 187 (472)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~ 187 (472)
. ......++|||+||+..+|+++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 12234568999999999999999999999999999999988 478999999999999999999
Q ss_pred HHHHhCCcEecCeeEEEEEccc
Q 012034 188 ALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 188 Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
|+..|||..++|+.|.|.|+++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999864
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.4e-33 Score=259.73 Aligned_cols=178 Identities=24% Similarity=0.403 Sum_probs=156.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+|.++++. +|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 457899999999999999999999999999999999985 8999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~ 183 (472)
.............. ......++|||+||+.++|+++|+++|+.||.|++++|+.+. +|.++|||||+|.+.+
T Consensus 106 ~~~~~~~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQLA-------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHHHH-------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhhhh-------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 77665433222111 112245689999999999999999999999999999999985 7899999999999999
Q ss_pred HHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 184 EASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 184 ~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+|.+|++.|||..|+|+.|.|.++..+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 999999999999999999999987644
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.2e-32 Score=246.78 Aligned_cols=162 Identities=32% Similarity=0.603 Sum_probs=150.0
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
.++|||+|||.++|+++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5889999999999999999999999999999999996 899999999999999999999999999999999999999875
Q ss_pred chhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHH
Q 012034 107 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 185 (472)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A 185 (472)
... ....++|||+||+..+++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 532 1234689999999999999999999999999999999886 788999999999999999
Q ss_pred HHHHHHhCCcEecCee--EEEEEc
Q 012034 186 SRALAEMNGKMIVSKP--LYVAVA 207 (472)
Q Consensus 186 ~~Ai~~l~g~~i~gk~--l~V~~a 207 (472)
.+|++.|||..+.|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888775
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=9.3e-33 Score=254.65 Aligned_cols=177 Identities=24% Similarity=0.462 Sum_probs=150.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+ .+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 356889999999999999999999999999999999999 4799999999999999999999976 89999999999999
Q ss_pred cccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCH
Q 012034 104 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 182 (472)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~ 182 (472)
+..+...... ......++|||+||+.++|+++|+++|+.||.|.+++|+.+. +|.++|||||+|.+.
T Consensus 89 ~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQRP------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCccccccc------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 8765432211 112244689999999999999999999999999999999985 789999999999999
Q ss_pred HHHHHHHHHhCCcEecCeeEEEEEcccHHHHHH
Q 012034 183 EEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 215 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~~ 215 (472)
++|.+|+.. ++..++|+.|.|.++..++....
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999976 89999999999999998876643
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.5e-33 Score=249.15 Aligned_cols=163 Identities=31% Similarity=0.566 Sum_probs=151.6
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999998 589999999999999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~ 184 (472)
.+.. ....++|||+||+..+++++|+++|+.||.|.++.+.++. +|.++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 6542 1234689999999999999999999999999999999986 88999999999999999
Q ss_pred HHHHHHHhCCcEecC--eeEEEEEc
Q 012034 185 ASRALAEMNGKMIVS--KPLYVAVA 207 (472)
Q Consensus 185 A~~Ai~~l~g~~i~g--k~l~V~~a 207 (472)
|.+|++.|||..+.| ++|+|.||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999987 99999986
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.9e-32 Score=247.67 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=147.6
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCC---CceeEEEEEeCCHHHHHHHHHHHCCCccC---Cccee
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG---KSKCFGFVNFENADDAAKAVEALNGKKFD---DREWY 100 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g---~skG~aFV~F~~~e~A~~Av~~lng~~i~---g~~l~ 100 (472)
..++|||+|||.++|+++|+++|++||.|.++.++++..+ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999999999654 89999999999999999999999998876 56777
Q ss_pred eeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcC
Q 012034 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 180 (472)
Q Consensus 101 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~ 180 (472)
+.++..... .....++|||+||+..+|+++|+++|+.||.|.++++.++.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 777654322 122456899999999999999999999999999999999989999999999999
Q ss_pred CHHHHHHHHHHhCCcEec---CeeEEEEEcc
Q 012034 181 TPEEASRALAEMNGKMIV---SKPLYVAVAQ 208 (472)
Q Consensus 181 s~~~A~~Ai~~l~g~~i~---gk~l~V~~a~ 208 (472)
+.++|.+|++.|||..+. +++|.|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999974
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.9e-32 Score=265.03 Aligned_cols=183 Identities=22% Similarity=0.308 Sum_probs=166.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999998 48999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCc-cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~ 183 (472)
..+... ......++|||+|||..+ |+++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.+
T Consensus 173 ~~~~~~---------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 173 DAGQLT---------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CGGGCC---------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred CCCCCC---------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 765321 122456789999999996 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEecCeeEEEEEcccHHHHHHHHHHhhhc
Q 012034 184 EASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 223 (472)
Q Consensus 184 ~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~~~~~~~~~~ 223 (472)
+|.+|+..|||..++|++|.|.|+..+..++..+..+...
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aa 277 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAA 277 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHH
Confidence 9999999999999999999999999998887776665543
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2e-32 Score=245.86 Aligned_cols=163 Identities=25% Similarity=0.526 Sum_probs=149.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+|||.++|+++|+++|++||.|.+|.++++ .+|+++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 4689999999999999999999999999999999999 579999999999999999999998 4678999999999987
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 184 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~ 184 (472)
.+.... ...+|||+||+.++|+++|+++|+.||.|.++++..+. +|.++|||||+|.+.++
T Consensus 80 ~~~~~~------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQD------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHHH------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhcc------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 643211 23589999999999999999999999999999999885 78999999999999999
Q ss_pred HHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
|.+|++ +++..++|+.|.|.++.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999997 8999999999999999765
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.7e-31 Score=260.87 Aligned_cols=172 Identities=21% Similarity=0.382 Sum_probs=147.8
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+|||.++|+++|+++|+.|| .|.+|.++.+..|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999999889999999999999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCC-ccHHHHHHHHhccCceEEEEEeeCCC--CCcccEEEEEcCCH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTP 182 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~e~L~~~F~~~G~I~~v~i~~~~~--g~s~g~afV~f~s~ 182 (472)
........ .......++|||+||+.. +|+++|+++|+.||.|.+|+|+.+.+ |.++|||||+|.+.
T Consensus 196 ~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 196 PLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp CC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 65443221 112335678999999999 99999999999999999999999887 99999999999999
Q ss_pred HHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 183 EEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 183 ~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=9e-31 Score=255.80 Aligned_cols=179 Identities=23% Similarity=0.408 Sum_probs=149.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHH----HHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
....++|||+|||+++|+++|+ ++|++||.|.+|.+++ +|+++|||||+|.+.++|.+|++.||+..|.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3568899999999999999977 8999999999999886 688999999999999999999999999999999999
Q ss_pred eeccccchhHHHHHHHHHHh-----------------hhh----------------------------------------
Q 012034 101 VGKAQKKSEREQELKGQFEQ-----------------AMK---------------------------------------- 123 (472)
Q Consensus 101 V~~a~~~~~~~~~~~~~~~~-----------------~~~---------------------------------------- 123 (472)
|.++..+..........+.. ...
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99987655321110000000 000
Q ss_pred ------------------------------------hhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC
Q 012034 124 ------------------------------------ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 167 (472)
Q Consensus 124 ------------------------------------~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~ 167 (472)
.......+++|||+||+..+|+++|+++|+.||.|.+|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 00112245679999999999999999999999999999999763
Q ss_pred CCCcccEEEEEcCCHHHHHHHHHHhCCcEec-CeeEEEEEccc
Q 012034 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 209 (472)
Q Consensus 168 ~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~-gk~l~V~~a~~ 209 (472)
+|||||+|.+.++|.+|++.|||..|. |+.|+|.|+++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 689999999999999999999999999 99999999864
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.2e-31 Score=242.93 Aligned_cols=165 Identities=27% Similarity=0.394 Sum_probs=146.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|..+.+....+|+++|||||+|.+.++|.+|+ +||+..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 46789999999999999999999999999887744444467899999999999999999999 59999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 184 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~ 184 (472)
..+... .....++|||+||+..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++
T Consensus 89 ~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 89 KGRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred CCcccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 765321 11234689999999999999999999999988776 5578899999999999999
Q ss_pred HHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 185 ASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 185 A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
|.+|+..|||..++|+.|.|.|+..+
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999764
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=7.8e-31 Score=236.65 Aligned_cols=158 Identities=24% Similarity=0.476 Sum_probs=142.9
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcC----C-------CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 95 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~f----G-------~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~ 95 (472)
..++|||+|||.++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .||+..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 67776664 45899999999999999999 89999999
Q ss_pred CcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccE
Q 012034 96 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGS 174 (472)
Q Consensus 96 g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~ 174 (472)
|+.|.|.++..... ....++|||+|||.++|+++|+++|+.||.|.++.+..+. +|.++||
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999998765432 1125689999999999999999999999999999999985 8899999
Q ss_pred EEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 175 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 175 afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
|||+|.+.++|.+|++.|||..++|+.|.|.+|.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999873
No 14
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=1.5e-32 Score=211.84 Aligned_cols=78 Identities=79% Similarity=1.074 Sum_probs=74.5
Q ss_pred cccchhhhhcCCHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHh
Q 012034 375 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452 (472)
Q Consensus 375 ~~~~~~~la~~~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~~ 452 (472)
+.+++++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|+++
T Consensus 7 ~~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 7 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp TTTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999988753
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=5.3e-31 Score=245.72 Aligned_cols=176 Identities=17% Similarity=0.233 Sum_probs=142.8
Q ss_pred CcceEEeCCCC-CCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp-~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+||| +++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+||+.|||..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 89999999999999999999999875 37999999999999999999999999999999999986
Q ss_pred cchhHHHH---HH------HHHHhhhhhh----------ccccccceeeeecCCCCccHHHHHHHHhccCce--EEEEEe
Q 012034 106 KKSEREQE---LK------GQFEQAMKET----------VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI--TSCKVM 164 (472)
Q Consensus 106 ~~~~~~~~---~~------~~~~~~~~~~----------~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I--~~v~i~ 164 (472)
.+...... .. ..+....... .....+.+|||+|||+++|+++|+++|+.||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 00 0000000000 001235689999999999999999999999999 899998
Q ss_pred eCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe----eEEEEEc
Q 012034 165 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK----PLYVAVA 207 (472)
Q Consensus 165 ~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk----~l~V~~a 207 (472)
.+. +.++|||||+|.+.++|.+|+..|||..|.|+ ++.|+++
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 875 55679999999999999999999999999876 6777775
No 16
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=8.9e-32 Score=210.66 Aligned_cols=78 Identities=33% Similarity=0.445 Sum_probs=75.1
Q ss_pred ccchhhhhcCCHHHHHHHhhhhhhhhHhh--cCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHhh
Q 012034 376 TALSTALANASPEQQRTLLGESLYPLVEQ--LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 453 (472)
Q Consensus 376 ~~~~~~la~~~~~~q~~~~g~~l~~~v~~--~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~~~ 453 (472)
++++++|+++++++||++|||+|||+|++ ++|++|+||||||||||++|||+||+|+++|++||+||++||++|++.+
T Consensus 6 p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 85 (92)
T 1ifw_A 6 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ 85 (92)
T ss_dssp SSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999 9999999999999999999999999999999999999999999998643
No 17
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=2.8e-32 Score=210.33 Aligned_cols=77 Identities=55% Similarity=0.736 Sum_probs=74.3
Q ss_pred ccccchhhhhcCCHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 012034 374 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 450 (472)
Q Consensus 374 ~~~~~~~~la~~~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~ 450 (472)
+.++++++||++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|+
T Consensus 7 ~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 7 QGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred CCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999998875
No 18
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.97 E-value=2.5e-31 Score=207.01 Aligned_cols=79 Identities=46% Similarity=0.793 Sum_probs=75.5
Q ss_pred ccchhhhhcCCHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHhhc
Q 012034 376 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454 (472)
Q Consensus 376 ~~~~~~la~~~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~~~~ 454 (472)
++++++||++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|++++.
T Consensus 6 ~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999998764
No 19
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.3e-31 Score=247.46 Aligned_cols=178 Identities=22% Similarity=0.402 Sum_probs=145.8
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC-----------CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG-----------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 95 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG-----------~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~ 95 (472)
..++|||+|||.++|+++|+++|++|| .|.++.+ ++++|||||+|.+.++|.+|+ .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 468999999999999999999999994 4555544 456899999999999999999 89999999
Q ss_pred CcceeeeccccchhHHHHHHH--HHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcc
Q 012034 96 DREWYVGKAQKKSEREQELKG--QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISK 172 (472)
Q Consensus 96 g~~l~V~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~ 172 (472)
|+.|.|.++..+......... ...............++|||+||+.++++++|+++|+.||.|.++.+..+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999998754221100000 000000111122456799999999999999999999999999999999986 88999
Q ss_pred cEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 173 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 173 g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
|||||+|.+.++|.+|++.|||..++|+.|.|.++..+
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999998765
No 20
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.97 E-value=8.5e-31 Score=222.09 Aligned_cols=80 Identities=45% Similarity=0.772 Sum_probs=76.3
Q ss_pred cccchhhhhcCCHHHHHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHhhc
Q 012034 375 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 454 (472)
Q Consensus 375 ~~~~~~~la~~~~~~q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~~~~ 454 (472)
.++++++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|++++.
T Consensus 51 ~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~~ 130 (144)
T 1g9l_A 51 EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 130 (144)
T ss_dssp CCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSSTT
T ss_pred chhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999986543
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=7.6e-30 Score=242.03 Aligned_cols=178 Identities=21% Similarity=0.314 Sum_probs=147.1
Q ss_pred cCCcceEEeCCCCC-CCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||. ++|+++|+++|++||.|.+|.++.+. +|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35688999999999 99999999999999999999999875 78999999999999999999999999999999999
Q ss_pred cccchhHH-------HHHHHHHHhhh----------hhhccccccceeeeecCCCCccHHHHHHHHhccC-ceEEEEEee
Q 012034 104 AQKKSERE-------QELKGQFEQAM----------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMR 165 (472)
Q Consensus 104 a~~~~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~ 165 (472)
+..+.... ......+.... ........+++|||+||+..+++++|+++|+.|| .|.+++++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 87542110 00000000000 0001112357899999999999999999999999 999999976
Q ss_pred CCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec-CeeEEEEEcccH
Q 012034 166 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRK 210 (472)
Q Consensus 166 ~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~-gk~l~V~~a~~k 210 (472)
+ ++|||||+|.+.++|.+|++.|||..+. |+.|.|.|++.+
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4 4789999999999999999999999999 999999998753
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.7e-29 Score=244.44 Aligned_cols=156 Identities=30% Similarity=0.524 Sum_probs=144.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 5678999999999999999999999999999999964 48999999999999999999999999999999999986
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHH
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 185 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A 185 (472)
. +++|||+||+..+|+++|+++|+.||.|.+|.|+.+.+|.++|||||+|.+.++|
T Consensus 95 ~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 95 H------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp C------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred c------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 3 3489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC-cEec---CeeEEEEEcccH
Q 012034 186 SRALAEMNG-KMIV---SKPLYVAVAQRK 210 (472)
Q Consensus 186 ~~Ai~~l~g-~~i~---gk~l~V~~a~~k 210 (472)
.+|+..||+ ..+. +++|.|.++...
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999954 4544 999999998754
No 23
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.1e-29 Score=247.32 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=141.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 567999999999999999999999999999999999998766 58999999999999999995 9999999999999986
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccC-ceEEEEEeeCCCCCcccEEEEEcCCHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPE 183 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~~~~g~s~g~afV~f~s~~ 183 (472)
. .++|||+|||..+++++|+++|+.|| .|.+|.++.+..|.++|||||+|.+.+
T Consensus 116 ~-------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 116 T-------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp C-------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred C-------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 2 45899999999999999999999999 999999999888899999999999999
Q ss_pred HHHHHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 184 EASRALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 184 ~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
+|.+|+..|+|..+.|+.|.|.++..+..
T Consensus 171 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 99999999999999999999999876543
No 24
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=8.3e-29 Score=242.10 Aligned_cols=156 Identities=24% Similarity=0.451 Sum_probs=145.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 35678999999999999999999999999 999888 567899999999999999999999999999999999985
Q ss_pred ccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHH
Q 012034 105 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 183 (472)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~ 183 (472)
.. .++|||+|||.++|+++|+++|+.||.|.+++++.+. +|.++|||||+|.+.+
T Consensus 93 ~~------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 93 PT------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp CC------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CC------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH
Confidence 42 2589999999999999999999999999999998875 7899999999999999
Q ss_pred HHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 184 EASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 184 ~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+|.+|+..++|..++|+.|.|.++..+
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999998764
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=7.8e-30 Score=235.94 Aligned_cols=176 Identities=20% Similarity=0.301 Sum_probs=145.1
Q ss_pred CcceEEeCCCCC-CCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+|||. ++|+++|+++|++||.|.+|.++.+. +|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357999999999 99999999999999999999998874 7899999999999999999999999999999999887
Q ss_pred cchhHHHHHH-------HHHHhhh----------hhhccccccceeeeecCCCCccHHHHHHHHhccC-ceEEEEEeeCC
Q 012034 106 KKSEREQELK-------GQFEQAM----------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDP 167 (472)
Q Consensus 106 ~~~~~~~~~~-------~~~~~~~----------~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~~~ 167 (472)
.......... ..+.... ........+++|||+||+..+++++|+++|+.|| .|.+++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 5431100000 0000000 0000012367899999999999999999999999 9999999775
Q ss_pred CCCcccEEEEEcCCHHHHHHHHHHhCCcEec-CeeEEEEEcccH
Q 012034 168 SGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRK 210 (472)
Q Consensus 168 ~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~-gk~l~V~~a~~k 210 (472)
++|||||+|.+.++|.+|+..|||..++ |+.|.|.|++.+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999998753
No 26
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=1.1e-28 Score=178.88 Aligned_cols=60 Identities=45% Similarity=0.720 Sum_probs=59.1
Q ss_pred HHHHhhhhhhhhHhhcCCccchhhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 012034 390 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 449 (472)
Q Consensus 390 q~~~~g~~l~~~v~~~~~~~a~kitgmll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~ 449 (472)
||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999987
No 27
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=6.2e-23 Score=173.21 Aligned_cols=110 Identities=37% Similarity=0.618 Sum_probs=76.4
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
..+||||+|||+++|+++|+++|++||.|.+|.|+.|. +.+||||||+|++.++|.+||+.||+..|.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46789999999999999999999999999999999985 44899999999999999999999999999999999999987
Q ss_pred chhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHH
Q 012034 107 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147 (472)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~ 147 (472)
+..+....... ....++|||+||+.++|++.
T Consensus 83 ~~~~~~~~~~~----------~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGAR----------AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC--------------------------------------
T ss_pred ccccccccccc----------cCCCCceEeCCCCCCccccc
Confidence 66544332211 12335799999999999864
No 28
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=5.4e-22 Score=176.78 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=113.0
Q ss_pred EEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeee
Q 012034 57 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 136 (472)
Q Consensus 57 ~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 136 (472)
++.|+.+.. +++|||||+|.+.++|++|++.+++....+..+.+........... ..............++|||
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEE
Confidence 456777644 6899999999999999999998876544333333322211100000 0000011112234578999
Q ss_pred ecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 137 KNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 137 ~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+||++++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|++|.|.++..+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999999999985 7899999999999999999999999999999999999998764
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=152.86 Aligned_cols=81 Identities=32% Similarity=0.551 Sum_probs=76.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
-..++|||+|||.++|+++|+++|++||+|.+|.+++| .+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999998 47999999999999999999999999999999999999998
Q ss_pred cc
Q 012034 105 QK 106 (472)
Q Consensus 105 ~~ 106 (472)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 30
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=5.3e-21 Score=168.97 Aligned_cols=138 Identities=22% Similarity=0.320 Sum_probs=113.1
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHH-CCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCcc
Q 012034 66 GKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144 (472)
Q Consensus 66 g~skG~aFV~F~~~e~A~~Av~~l-ng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 144 (472)
.+-+|+++|+|.+.++|++|++++ |+..++| .|.+.++..+......... .............++|||+||++++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--HHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS--CCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc--ccccccccCCCCCCEEEEeCCCCCCC
Confidence 356899999999999999999999 9999999 9999988754321000000 00001112233467899999999999
Q ss_pred HHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 145 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 145 ~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|.+|+..|||..+.|++|.|.++..+
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999987 6899999999999999999999999999999999998764
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=150.95 Aligned_cols=88 Identities=16% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++||.|.+|.|++|. +|+++|||||+|++.++|++|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999995 6999999999999999999999999999999999999999
Q ss_pred ccchhHHHH
Q 012034 105 QKKSEREQE 113 (472)
Q Consensus 105 ~~~~~~~~~ 113 (472)
..+..+...
T Consensus 84 ~~~~~~~~~ 92 (110)
T 3s8s_A 84 IKGQQRMKY 92 (110)
T ss_dssp STTHHHHHH
T ss_pred CCCcHHHHH
Confidence 877665543
No 32
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=145.80 Aligned_cols=83 Identities=37% Similarity=0.615 Sum_probs=78.0
Q ss_pred cccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 127 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..+++++|||+|||.++|+++|+++|+.||.|.+|+|++++ +|.++|||||+|.+.++|.+|++.|||..++|++|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678899999999999999999999999999999999985 68999999999999999999999999999999999999
Q ss_pred Eccc
Q 012034 206 VAQR 209 (472)
Q Consensus 206 ~a~~ 209 (472)
||++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9864
No 33
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=7.2e-19 Score=147.95 Aligned_cols=104 Identities=25% Similarity=0.368 Sum_probs=92.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45789999999999999999999999999999999876 5569999999999999999999999999999999999987
Q ss_pred cchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHhccCc
Q 012034 106 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT 157 (472)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~ 157 (472)
.+... ++++...++++|.++|++||.
T Consensus 84 ~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF--------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT--------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh--------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54321 356777889999999999984
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=137.68 Aligned_cols=82 Identities=33% Similarity=0.518 Sum_probs=75.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35788999999999999999999999999999999999 58999999999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-19 Score=144.86 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=75.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCC--eeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCC----ccCCc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGT--ITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGK----KFDDR 97 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~--I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~----~i~g~ 97 (472)
....+||||+|||+++|+++|+++|++||. |.+|++++| .+|++||||||+|.+.++|.+|++.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999995 678999998 47999999999999999999999999997 48999
Q ss_pred ceeeecccc
Q 012034 98 EWYVGKAQK 106 (472)
Q Consensus 98 ~l~V~~a~~ 106 (472)
.|.|.+|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=6.3e-18 Score=141.18 Aligned_cols=91 Identities=12% Similarity=0.256 Sum_probs=83.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||++++++++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35689999999999999999999999999999999986 58999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHh
Q 012034 209 RKEERRARLQAQ 220 (472)
Q Consensus 209 ~k~~~~~~~~~~ 220 (472)
.+..++...+..
T Consensus 85 ~~~~~~~~~~~~ 96 (110)
T 3s8s_A 85 KGQQRMKYYELI 96 (110)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCcHHHHHHHHh
Confidence 887776555443
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.6e-18 Score=135.57 Aligned_cols=79 Identities=33% Similarity=0.583 Sum_probs=76.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999 68999999999999999999999999999999999999999765
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=141.40 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=79.7
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+.+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=8e-19 Score=141.09 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=71.4
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCC--CeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
.+|||+|||+++|+++|+++|++|| .|.++.++.| .+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999 589999999999999999999999999999999999999987
Q ss_pred cchh
Q 012034 106 KKSE 109 (472)
Q Consensus 106 ~~~~ 109 (472)
....
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-19 Score=145.36 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=74.9
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHC-CCccCCcceeeecc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALN-GKKFDDREWYVGKA 104 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~ln-g~~i~g~~l~V~~a 104 (472)
.++|||+|||.++||++|+++|++|| +|.+|.|++| .+|++||||||+|.+.++|.+|++.++ +..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999998 579999999999999999999999874 56799999999999
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 77643
No 41
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=3.2e-18 Score=141.50 Aligned_cols=84 Identities=30% Similarity=0.484 Sum_probs=79.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC---cceeee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD---REWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g---~~l~V~ 102 (472)
...++|||+|||.++|+++|+++|++||.|.+|.|..+.+|+++|||||+|.+.++|.+|++.||+..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred ccccchh
Q 012034 103 KAQKKSE 109 (472)
Q Consensus 103 ~a~~~~~ 109 (472)
++..+..
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987653
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=138.48 Aligned_cols=82 Identities=30% Similarity=0.507 Sum_probs=78.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+..+.+++++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 012034 105 QK 106 (472)
Q Consensus 105 ~~ 106 (472)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 43
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=142.45 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=77.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.++.|.+|+++|||||+|++.++|.+|++ +++..+.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45688999999999999999999999999999999999779999999999999999999999 89999999999999876
Q ss_pred cchh
Q 012034 106 KKSE 109 (472)
Q Consensus 106 ~~~~ 109 (472)
...+
T Consensus 88 ~~~~ 91 (103)
T 1s79_A 88 DYFA 91 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=141.09 Aligned_cols=84 Identities=46% Similarity=0.750 Sum_probs=79.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||+++|+++|+++|++||.|.+|.+..+ +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=137.55 Aligned_cols=83 Identities=31% Similarity=0.596 Sum_probs=78.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+|.++.+. +++++|||||+|++.++|.+|++.||+..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999999994 6999999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7654
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=140.62 Aligned_cols=85 Identities=32% Similarity=0.491 Sum_probs=80.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999996 899999999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.3e-18 Score=135.64 Aligned_cols=81 Identities=32% Similarity=0.429 Sum_probs=76.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.++.+..| .+++++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356889999999999999999999999999999999888 6889999999999999999999999999999999999998
Q ss_pred cc
Q 012034 104 AQ 105 (472)
Q Consensus 104 a~ 105 (472)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=143.80 Aligned_cols=83 Identities=33% Similarity=0.595 Sum_probs=79.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.+..+.+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cch
Q 012034 106 KKS 108 (472)
Q Consensus 106 ~~~ 108 (472)
.+.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 49
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=3.4e-18 Score=143.82 Aligned_cols=83 Identities=31% Similarity=0.531 Sum_probs=78.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+|.|+.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 467899999999999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 50
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=150.16 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=78.7
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC--CeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
..++|||+|||+++|+++|+++|++|| .|.+|.|+.| .+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999999 5899999999999999999999999999999999999999
Q ss_pred cccchhHH
Q 012034 104 AQKKSERE 111 (472)
Q Consensus 104 a~~~~~~~ 111 (472)
+..+....
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98766544
No 51
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=139.83 Aligned_cols=84 Identities=27% Similarity=0.395 Sum_probs=78.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.| .+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 355788999999999999999999999999999999999 4699999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87653
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=140.63 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=73.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC--CccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng--~~i~g~~l~V~ 102 (472)
....++|||+|||+++||++|+++|++||.|.+|.|+++ ||||||+|++.++|.+|++.|++ ..|.|+.|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 467899999999999999999999999999999999976 79999999999999999998864 78999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++..+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 997654
No 53
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=142.42 Aligned_cols=100 Identities=25% Similarity=0.359 Sum_probs=83.6
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
++|||+|||.++|+++|+++|++||.|.+|.+..+ ++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999987 78999999999999999999999999999999999998765
Q ss_pred hHHHHHHHHHHhhhhhhccccccceeeeecCC
Q 012034 109 EREQELKGQFEQAMKETVDKFQGLNLYIKNLG 140 (472)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~ 140 (472)
.... ............+|||+||+
T Consensus 77 ~~~~--------~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSR--------FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSC--------CCSCCCSCCCCSCCCSCCCC
T ss_pred Cccc--------CCCCCccccCCCceecCCCC
Confidence 3210 00111122235689999997
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=137.39 Aligned_cols=81 Identities=28% Similarity=0.413 Sum_probs=76.7
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE--------EEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccC
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS--------AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD 95 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~ 95 (472)
....++|||+|||.++|+++|+++|++||.|.+ +.++.| .+|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 356899999999999999999999999999999 999999 57999999999999999999999999999999
Q ss_pred Ccceeeeccc
Q 012034 96 DREWYVGKAQ 105 (472)
Q Consensus 96 g~~l~V~~a~ 105 (472)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=5.8e-18 Score=137.64 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=78.4
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
.++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999999 4799999999999999999999999999999999999999987
Q ss_pred chhH
Q 012034 107 KSER 110 (472)
Q Consensus 107 ~~~~ 110 (472)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7654
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=139.88 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=79.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhc-CCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc-cCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~-fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~-i~g~~l~V~~ 103 (472)
...++|||+|||.++|+++|+++|++ ||.|.+|.|+.|.+|+++|||||+|.+.++|.+|++.||+.. |.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 56789999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 976543
No 57
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1e-17 Score=134.95 Aligned_cols=83 Identities=34% Similarity=0.421 Sum_probs=77.7
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.++.+.++ +|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999999985 8899999999999999999999999999999999999998
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=140.38 Aligned_cols=84 Identities=32% Similarity=0.547 Sum_probs=79.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+ .+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456889999999999999999999999999999999998 5789999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=2e-18 Score=141.68 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=77.0
Q ss_pred CcceEEeCCCCC------CCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCC-cc
Q 012034 27 KFNNVFVKNLDE------STTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDD-RE 98 (472)
Q Consensus 27 ~~~~l~V~nLp~------~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g-~~ 98 (472)
..++|||+|||. ++++++|+++|++||.|.+|.|+.|. +|+++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999999995 59999999999999999999999999999999 99
Q ss_pred eeeeccccch
Q 012034 99 WYVGKAQKKS 108 (472)
Q Consensus 99 l~V~~a~~~~ 108 (472)
|.|.++..+.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997543
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=140.63 Aligned_cols=83 Identities=33% Similarity=0.450 Sum_probs=78.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.+.+++++|||||+|++.++|.+|++.||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 653
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=137.46 Aligned_cols=83 Identities=23% Similarity=0.502 Sum_probs=77.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.| .+++++|||||+|.+.++|.+|++ ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999998 478999999999999999999998 999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 97654
No 62
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=9.9e-18 Score=139.01 Aligned_cols=81 Identities=32% Similarity=0.462 Sum_probs=77.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+.+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 012034 105 Q 105 (472)
Q Consensus 105 ~ 105 (472)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=139.13 Aligned_cols=84 Identities=30% Similarity=0.523 Sum_probs=79.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 356899999999999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97654
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=1e-17 Score=140.88 Aligned_cols=85 Identities=35% Similarity=0.560 Sum_probs=79.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 357889999999999999999999999999999999999 4899999999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 976643
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=135.85 Aligned_cols=82 Identities=34% Similarity=0.487 Sum_probs=77.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999999994 689999999999999999999999999999999999999
Q ss_pred ccc
Q 012034 104 AQK 106 (472)
Q Consensus 104 a~~ 106 (472)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=139.46 Aligned_cols=84 Identities=40% Similarity=0.667 Sum_probs=78.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356889999999999999999999999999999999998 4788999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 97654
No 67
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.7e-18 Score=139.56 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=79.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 87654
No 68
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=7.6e-18 Score=151.14 Aligned_cols=139 Identities=19% Similarity=0.341 Sum_probs=78.9
Q ss_pred EEeCCHHHHHHHHHHHCCCccC--CcceeeeccccchhHHHHHHHH----HHhhhhhhccccccceeeeecCCCCccHHH
Q 012034 74 VNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQ----FEQAMKETVDKFQGLNLYIKNLGDSIDDEK 147 (472)
Q Consensus 74 V~F~~~e~A~~Av~~lng~~i~--g~~l~V~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~ 147 (472)
..|++.++|..|+..+++.... |+.+.+.++.... ...+... .............+++|||+||+.++++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA--IHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc--ccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 7899999999999999887665 5555555432211 1111100 000111122234567899999999999999
Q ss_pred HHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHHHH
Q 012034 148 LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 214 (472)
Q Consensus 148 L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~~~ 214 (472)
|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+..+..+.
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999884 78899999999999999999999999999999999999998775544
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=138.09 Aligned_cols=86 Identities=34% Similarity=0.603 Sum_probs=80.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34688999999999999999999999999999999998 48999999999999999999999999999999999999999
Q ss_pred ccchhHH
Q 012034 105 QKKSERE 111 (472)
Q Consensus 105 ~~~~~~~ 111 (472)
..+..+.
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 8776554
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9e-18 Score=136.97 Aligned_cols=83 Identities=31% Similarity=0.508 Sum_probs=77.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC----CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG----DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~----~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
...++|||+|||.++|+++|+++|++||.|.+|.+..+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999999999999884 3489999999999999999999999999999999999
Q ss_pred eccccch
Q 012034 102 GKAQKKS 108 (472)
Q Consensus 102 ~~a~~~~ 108 (472)
.++..+.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997654
No 71
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=138.39 Aligned_cols=83 Identities=34% Similarity=0.550 Sum_probs=78.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEE-EEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v-~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
...++|||+|||.++|+++|+++|++||.|.++ .|+.| .+++++|||||+|++.++|.+|++.||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 99998 6899999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97654
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=136.82 Aligned_cols=83 Identities=35% Similarity=0.578 Sum_probs=77.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.+..+ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 467899999999999999999999999999999999998655 8999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7654
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=138.65 Aligned_cols=84 Identities=23% Similarity=0.458 Sum_probs=79.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC--CCCceeEEEEEeCCHHHHHHHHHHH-CCCccCCcceee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--DGKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYV 101 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~--~g~skG~aFV~F~~~e~A~~Av~~l-ng~~i~g~~l~V 101 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+. +++++|||||+|.+.++|.+|++.| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4568999999999999999999999999999999999984 8999999999999999999999999 999999999999
Q ss_pred eccccch
Q 012034 102 GKAQKKS 108 (472)
Q Consensus 102 ~~a~~~~ 108 (472)
.++..+.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9997654
No 74
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=136.00 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=77.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCee-EEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcc----
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT-SAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE---- 98 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~-~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~---- 98 (472)
....++|||+|||.++|+++|+++|++||.|. ++.++.|. +++++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35678999999999999999999999999999 99999994 8999999999999999999999999999999999
Q ss_pred eeeeccccc
Q 012034 99 WYVGKAQKK 107 (472)
Q Consensus 99 l~V~~a~~~ 107 (472)
|.|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998654
No 75
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=7.9e-18 Score=141.76 Aligned_cols=83 Identities=45% Similarity=0.719 Sum_probs=75.7
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
.++|||+|||.++|+++|+++|+.||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4589999999999999999999999999999999985 458999999999999999999999999999999999999876
Q ss_pred HHHH
Q 012034 211 EERR 214 (472)
Q Consensus 211 ~~~~ 214 (472)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 5443
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=136.19 Aligned_cols=81 Identities=32% Similarity=0.457 Sum_probs=76.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.++.+..+. +++++|||||+|++.++|.+|++.||+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3567899999999999999999999999999999999984 689999999999999999999999999999999999998
Q ss_pred cc
Q 012034 104 AQ 105 (472)
Q Consensus 104 a~ 105 (472)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 77
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=138.82 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=78.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999984 699999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 97543
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.8e-18 Score=139.14 Aligned_cols=84 Identities=31% Similarity=0.405 Sum_probs=79.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.| .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 457889999999999999999999999999999999998 5789999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=137.28 Aligned_cols=83 Identities=27% Similarity=0.387 Sum_probs=77.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.|..+ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456899999999999999999999999999999999998544 6999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 7654
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.5e-18 Score=140.32 Aligned_cols=85 Identities=27% Similarity=0.417 Sum_probs=79.2
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHC------CCccCCc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALN------GKKFDDR 97 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~ln------g~~i~g~ 97 (472)
....++|||+|||+++|+++|+++|++||.|.+|.|+.| .+++++|||||+|.+.++|.+|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 456889999999999999999999999999999999999 578999999999999999999999999 9999999
Q ss_pred ceeeeccccchh
Q 012034 98 EWYVGKAQKKSE 109 (472)
Q Consensus 98 ~l~V~~a~~~~~ 109 (472)
.|.|.++..+..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999976543
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.6e-17 Score=132.89 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=75.5
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+|||.++|+++|+++|++||.|.++.+..+. +++++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999999994 8999999999999999999999 899999999999999986
Q ss_pred cc
Q 012034 106 KK 107 (472)
Q Consensus 106 ~~ 107 (472)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-18 Score=134.39 Aligned_cols=80 Identities=30% Similarity=0.473 Sum_probs=75.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999998 57999999999999999999999999999999999999886
Q ss_pred c
Q 012034 105 Q 105 (472)
Q Consensus 105 ~ 105 (472)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.1e-17 Score=138.40 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=78.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCcc---CCccee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKF---DDREWY 100 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i---~g~~l~ 100 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.|. +|+++|||||+|.+.++|.+|++.||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4568899999999999999999999999999999999984 699999999999999999999999999998 899999
Q ss_pred eeccccch
Q 012034 101 VGKAQKKS 108 (472)
Q Consensus 101 V~~a~~~~ 108 (472)
|.++..+.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.3e-17 Score=143.47 Aligned_cols=84 Identities=35% Similarity=0.473 Sum_probs=78.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+++| .+|+++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 466889999999999999999999999999999999998 5789999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97653
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=1.2e-17 Score=139.22 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=78.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+..+ .+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97654
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=145.26 Aligned_cols=85 Identities=25% Similarity=0.475 Sum_probs=79.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||+|.+|.|+.+. +|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976643
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=134.05 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=75.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CC-CceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g-~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
+.++|||+|||.++|+++|+++|++||.|.++.+..+. ++ +++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 56899999999999999999999999999999998885 33 38999999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=7.3e-18 Score=130.43 Aligned_cols=74 Identities=32% Similarity=0.539 Sum_probs=70.9
Q ss_pred eEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
+|||+|||.++|+++|+++|++||.|.++.+..+. +|+++|||||+|.+.++|++|++ +|+..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999985 79999999999999999999998 9999999999999875
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=135.71 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=72.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc--cCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK--FDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~--i~g~~l~V~ 102 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+++ +||||||+|++.++|.+|++.|++.. +.|+.|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 35688999999999999999999999999999999985 37999999999999999999999876 789999999
Q ss_pred ccccc
Q 012034 103 KAQKK 107 (472)
Q Consensus 103 ~a~~~ 107 (472)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99765
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=2.7e-17 Score=131.01 Aligned_cols=79 Identities=28% Similarity=0.511 Sum_probs=73.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 467889999999999999999999999999999999999 479999999999999999999996 588899999999987
Q ss_pred c
Q 012034 104 A 104 (472)
Q Consensus 104 a 104 (472)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=132.88 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=77.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||+++|+++|+++|+.| .|.+|.++.+.+|+++|||||+|.+.++|.+|++ ||+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567899999999999999999999999 9999999999999999999999999999999999 9999999999999998
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=6.3e-18 Score=146.55 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=78.4
Q ss_pred EEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHH
Q 012034 71 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 150 (472)
Q Consensus 71 ~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~ 150 (472)
++|++|++...+..|++.+++....|+.- +.+.... ......++|||+||+.++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~------------------~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP------------------PDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp ------------------------------CCSCCSC------------------SSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC------------------CCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 78899999999999999998877655431 1222111 1222456899999999999999999
Q ss_pred HHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 151 LFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 151 ~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+++.+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999885 7889999999999999999999999999999999999998764
No 93
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=140.05 Aligned_cols=85 Identities=29% Similarity=0.444 Sum_probs=79.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCee--------EEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccC
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT--------SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD 95 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~--------~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~ 95 (472)
....++|||+|||.++|+++|+++|++||.|. .|.|+.| .+|+++|||||+|.+.++|.+|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999999999 5999998 68999999999999999999999999999999
Q ss_pred Ccceeeeccccchh
Q 012034 96 DREWYVGKAQKKSE 109 (472)
Q Consensus 96 g~~l~V~~a~~~~~ 109 (472)
|+.|.|.++..+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987653
No 94
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=9.4e-18 Score=141.75 Aligned_cols=81 Identities=36% Similarity=0.552 Sum_probs=76.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++|+++|+++|++||.|.+|.++.| .+|+++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 356789999999999999999999999999999999998 5789999999999999999999999999999999999998
Q ss_pred cc
Q 012034 104 AQ 105 (472)
Q Consensus 104 a~ 105 (472)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=2e-17 Score=141.03 Aligned_cols=83 Identities=30% Similarity=0.428 Sum_probs=79.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|..+.+|+++|||||+|++.++|.+|++.||+..|.|+.|.|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 754
No 96
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=135.43 Aligned_cols=81 Identities=26% Similarity=0.295 Sum_probs=75.6
Q ss_pred CCcceEEeCCCCCCCCHHHHH----HHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
...++|||+|||+++|+++|+ ++|++||.|.+|.|+.|..+ +|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999 99999999999999998665 899999999999999999999999999999999
Q ss_pred eccccch
Q 012034 102 GKAQKKS 108 (472)
Q Consensus 102 ~~a~~~~ 108 (472)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 97
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=138.33 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=74.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC--CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~--~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
....++|||+|||.++|+++|+++|++|| |.+|.++.+. +|+++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 46789999999999999999999999999 9999999985 7999999999999999999999 899999999999999
Q ss_pred ccccc
Q 012034 103 KAQKK 107 (472)
Q Consensus 103 ~a~~~ 107 (472)
++..+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98765
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=137.01 Aligned_cols=84 Identities=27% Similarity=0.513 Sum_probs=78.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++|+++|+++|++||.|.+|.|+.+ .+++++|||||+|++.++|.+|++. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 467899999999999999999999999999999999999 5799999999999999999999998 99999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976643
No 99
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=136.65 Aligned_cols=83 Identities=20% Similarity=0.434 Sum_probs=76.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc--------CC
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF--------DD 96 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i--------~g 96 (472)
....++|||+|||.++|+++|+++|++||.|.++.|+.+.+++++|||||+|.+.++|.+|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999 46
Q ss_pred cceeeeccccc
Q 012034 97 REWYVGKAQKK 107 (472)
Q Consensus 97 ~~l~V~~a~~~ 107 (472)
+.|.|.++..+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 67888887643
No 100
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=1.3e-17 Score=135.05 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999998888776 67899999999999999999999999999999999999987
Q ss_pred cc
Q 012034 105 QK 106 (472)
Q Consensus 105 ~~ 106 (472)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 101
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=140.74 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCC---eeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGT---ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~---I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
...++|||+|||+++|+++|+++|+.||. |.+|.|+.|.+|+++|||||+|++.++|++|++ +|++.|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 56788999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 102
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=136.18 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=76.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 356789999999999999999999999999998777776 6899999999999999999999999999999999999999
Q ss_pred cccc
Q 012034 104 AQKK 107 (472)
Q Consensus 104 a~~~ 107 (472)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=138.85 Aligned_cols=82 Identities=34% Similarity=0.564 Sum_probs=76.8
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+..|.. .++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46789999999999999999999999999999999999854 48999999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 104
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.2e-17 Score=135.01 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=76.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++|| |.+|.++.|. +++++|||||+|++.++|.+|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45688999999999999999999999997 9999999995 6999999999999999999999 8999999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87654
No 105
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.6e-17 Score=143.78 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=76.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCC---eeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGT---ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~---I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
...++|||+|||+++|+++|+++|+.||. |.+|.|++|.+|+++|||||+|++.++|++|++ +|++.|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 56789999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred ccccc
Q 012034 103 KAQKK 107 (472)
Q Consensus 103 ~a~~~ 107 (472)
++..+
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98654
No 106
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=136.12 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=74.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||+++|+++|+++|++||.+ +|.|+.|.+|+++|||||+|++.++|++||+ +|++.|.++.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999955 9999999999999999999999999999995 7999999999999887
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.8e-18 Score=137.96 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCcceEEeCCCCC-CCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCC--ccCCcceeee
Q 012034 26 TKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK--KFDDREWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~--~i~g~~l~V~ 102 (472)
...++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|++.||+. .|.|+.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4678999999999 9999999999999999999999875 689999999999999999999865 4999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998643
No 108
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-18 Score=140.99 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=78.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCe-eEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I-~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++|+++|+++|+.||.| .+|.|+.|.+|+++|||||+|.+.++|.+||+. |+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3567899999999999999999999999999 899999999999999999999999999999986 99999999999999
Q ss_pred cccchhH
Q 012034 104 AQKKSER 110 (472)
Q Consensus 104 a~~~~~~ 110 (472)
+..+..+
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9766544
No 109
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=5e-17 Score=151.84 Aligned_cols=107 Identities=37% Similarity=0.612 Sum_probs=88.6
Q ss_pred ccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHH
Q 012034 3 INDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 82 (472)
Q Consensus 3 ~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A 82 (472)
+.|+.+.+.......... ....++|||+|||+++|+++|+++|++||.|.+|.|+.|.+ .++|||||+|.+.++|
T Consensus 82 ~~g~~i~~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 82 IKGKPVRIMWSQRDPSLR----KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAA 156 (213)
T ss_dssp ETTEECEEEECCCCTHHH----HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHH
T ss_pred cCCccccccccccccccc----ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHH
Confidence 455666655444333222 23567899999999999999999999999999999999854 4799999999999999
Q ss_pred HHHHHHHCCCccCCcceeeeccccchhHHHHH
Q 012034 83 AKAVEALNGKKFDDREWYVGKAQKKSEREQEL 114 (472)
Q Consensus 83 ~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~ 114 (472)
.+|++.|||..|+|+.|.|.++..+.+++...
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 99999999999999999999998876655443
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=136.28 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE-EEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|+.||.|.+ |.|+.|.+|+++|||||+|++.++|.+|++. ++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56789999999999999999999999999987 8888888999999999999999999999997 999999999999987
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 111
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=134.46 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=72.3
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCc--eEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCc----EecCeeEEE
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKPLYV 204 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~--I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~----~i~gk~l~V 204 (472)
.+|||+||+.++|+++|+++|++||. |.+|++++|+ +|.+||||||+|.+.++|.+|++.|||. .|+|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 47999999999999999999999995 6789999986 6899999999999999999999999996 589999999
Q ss_pred EEccc
Q 012034 205 AVAQR 209 (472)
Q Consensus 205 ~~a~~ 209 (472)
+||+.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99875
No 112
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=135.63 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=75.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|..+ ++++|||||+|++.++|.+|++.||+..|.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 467899999999999999999999999999999999654 568999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7653
No 113
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=7.8e-17 Score=127.03 Aligned_cols=79 Identities=34% Similarity=0.650 Sum_probs=75.4
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
++|||+|||.++++++|+++|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999988 47899999999999999999999999999999999999999875
No 114
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=139.53 Aligned_cols=83 Identities=20% Similarity=0.356 Sum_probs=77.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|+.||.|.+|.|+.|. +|+++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 456899999999999999999999999999999999985 5899999999999999999999 99999999999999998
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
..+..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 76543
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.3e-17 Score=129.89 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=69.9
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..+-|||+||++.+||++|+++|.+||+|.++.+.. +||||||+|.+.++|.+|++.||+..+.|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456799999999999999999999999999999865 69999999999999999999999999999999999993
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.1e-18 Score=135.71 Aligned_cols=81 Identities=30% Similarity=0.526 Sum_probs=73.0
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
.++|||+|||.++|+++|+++|++||.|.++.+..+. +|+++|||||+|.+.+ |.+|++.||+..+.|+.|.|.+|..
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3689999999999999999999999999999999984 6999999999999999 9999999999999999999999976
Q ss_pred chh
Q 012034 107 KSE 109 (472)
Q Consensus 107 ~~~ 109 (472)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=131.07 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=68.4
Q ss_pred ceEEeCCCCCCC------CHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc-ceee
Q 012034 29 NNVFVKNLDEST------TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR-EWYV 101 (472)
Q Consensus 29 ~~l~V~nLp~~~------tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~-~l~V 101 (472)
++|||+|||.++ |+++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|||..+.|+ .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 789999999999 779999999999999999987 56889999999999999999999999999999999 8877
Q ss_pred e
Q 012034 102 G 102 (472)
Q Consensus 102 ~ 102 (472)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-17 Score=130.00 Aligned_cols=75 Identities=29% Similarity=0.529 Sum_probs=71.7
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
++|||+|||.++|+++|+++|++||.|.++.+..+. +|+++|||||+|.+.++|.+|++.++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999984 79999999999999999999999998 9999999999986
No 119
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=134.09 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=72.9
Q ss_pred ceeeeecCCCCccHHHHHHHHhccC-ceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhC-CcEecCeeEEEEEcc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN-GKMIVSKPLYVAVAQ 208 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~-g~~i~gk~l~V~~a~ 208 (472)
.+|||+|||.++|+++|+++|+.|| .|.+|+|++++ +|.++|||||+|.+.++|.+|++.++ +..++|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4799999999999999999999999 89999999885 68999999999999999999999874 567999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 120
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=8.7e-17 Score=127.92 Aligned_cols=81 Identities=28% Similarity=0.539 Sum_probs=75.0
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++++++|+++|+.||.|.+++++.+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 35689999999999999999999999999999999985 78999999999999999999999999999999999999998
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 121
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=9.9e-18 Score=144.49 Aligned_cols=82 Identities=18% Similarity=0.362 Sum_probs=77.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE--EEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCC----ccCCc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS--AVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGK----KFDDR 97 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~--v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~----~i~g~ 97 (472)
....++|||+|||+++|+++|+++|++||.|.+ |+|++|. +|++||||||+|++. +|.+|++.||+. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999977 9999996 899999999999999 999999999999 99999
Q ss_pred ceeeeccccc
Q 012034 98 EWYVGKAQKK 107 (472)
Q Consensus 98 ~l~V~~a~~~ 107 (472)
.|.|.++..+
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999764
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=138.33 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=76.4
Q ss_pred CCcceEEeCCCCCCCCHHHHH---HHHhcCCCeeEEEEEECC----CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcc
Q 012034 26 TKFNNVFVKNLDESTTDEDLK---KIFGEYGTITSAVVMRDG----DGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 98 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~---~~F~~fG~I~~v~i~~d~----~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~ 98 (472)
...++|||+|||+++|+++|+ ++|++||.|.+|.|..+. +++++|||||+|++.++|.+|++.||+..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457889999999999999999 999999999999999884 2367799999999999999999999999999999
Q ss_pred eeeeccccch
Q 012034 99 WYVGKAQKKS 108 (472)
Q Consensus 99 l~V~~a~~~~ 108 (472)
|.|.++..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 123
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=3.6e-17 Score=139.82 Aligned_cols=85 Identities=27% Similarity=0.388 Sum_probs=79.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.|+.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3567899999999999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 976543
No 124
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=138.63 Aligned_cols=82 Identities=37% Similarity=0.531 Sum_probs=77.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
+...++|||+|||+++|+++|+++|++||.|.+|.|+.+ .+++++|||||+|.+.++|.+|++.+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 467899999999999999999999999999999999998 4799999999999999999999999998 89999999999
Q ss_pred cccc
Q 012034 104 AQKK 107 (472)
Q Consensus 104 a~~~ 107 (472)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8654
No 125
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=139.84 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=75.7
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCe----eEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTI----TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I----~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
....++|||+|||+++|+++|+++|++||.| .+|.|++|.+|+++|||||+|++.++|.+||+. |++.|.++.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4667899999999999999999999999975 689999999999999999999999999999986 99999999999
Q ss_pred eeccccc
Q 012034 101 VGKAQKK 107 (472)
Q Consensus 101 V~~a~~~ 107 (472)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9888644
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=138.69 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=76.0
Q ss_pred CCcceEEeCCCCCCCCHHHHH----HHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
...++|||+|||+++++++|+ ++|++||.|.+|.+. .++++||||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 457899999999999999876 699999999988774 46889999999999999999999999999999999999
Q ss_pred eccccchhHH
Q 012034 102 GKAQKKSERE 111 (472)
Q Consensus 102 ~~a~~~~~~~ 111 (472)
.++..+....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9998876644
No 127
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-17 Score=136.18 Aligned_cols=83 Identities=25% Similarity=0.439 Sum_probs=76.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-C-CCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-D-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~-g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
....++|||+|||.++|+++|+++|++|| |.+|.|+.+. + |+++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35678999999999999999999999999 9999999985 3 899999999999999999999 899999999999999
Q ss_pred ccccchh
Q 012034 103 KAQKKSE 109 (472)
Q Consensus 103 ~a~~~~~ 109 (472)
++..+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976543
No 128
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=137.82 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=72.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC--CccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng--~~i~g~~l~V~ 102 (472)
....++|||+|||+++|+++|+++|++||.|.+|.|+++ ||||||+|++.++|.+|++.|++ ..|.|+.|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 356789999999999999999999999999999999976 79999999999999999998874 68999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++..+.
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 997654
No 129
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=8.2e-17 Score=142.91 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=78.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+|.|+.+. +++++|||||+|++.++|.+||+.||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467999999999999999999999999999999999995 6899999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=4.1e-17 Score=133.77 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=77.2
Q ss_pred cceeeeecCCC------CccHHHHHHHHhccCceEEEEEeeCCC-CCcccEEEEEcCCHHHHHHHHHHhCCcEecC-eeE
Q 012034 131 GLNLYIKNLGD------SIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPL 202 (472)
Q Consensus 131 ~~~l~V~nL~~------~~t~e~L~~~F~~~G~I~~v~i~~~~~-g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g-k~l 202 (472)
+++|||+|||. ++++++|+++|+.||.|.+|+|++++. |+++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 999999999999999999999999874 8999999999999999999999999999999 999
Q ss_pred EEEEcccHHH
Q 012034 203 YVAVAQRKEE 212 (472)
Q Consensus 203 ~V~~a~~k~~ 212 (472)
.|.++..++.
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999987654
No 131
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.7e-17 Score=132.37 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=76.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++|+++|+++|++||.|.+|.|+.+ .+|+++|||||+|.+.++|.+|++ +++.|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 356789999999999999999999999999999999999 479999999999999999999998 57899999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976543
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=136.07 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=73.5
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
.++|||+|||+++|+++|+++|+.| .|.+|.|+.|.+|+++|||||+|++.++|.+|| .+|++.|.|+.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 5789999999999999999999999 899999999988999999999999999999999 69999999999999888643
No 133
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=130.91 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=77.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+.++|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 134
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=132.73 Aligned_cols=78 Identities=13% Similarity=0.271 Sum_probs=71.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH--CCCccCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL--NGKKFDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l--ng~~i~g~~l~V~~ 103 (472)
...++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|++.++|.+|++.| ++..+.|+.|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 46789999999999999999999999999999998865 899999999999999999987 46789999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 88 a~~~~ 92 (101)
T 2cq1_A 88 SNHKE 92 (101)
T ss_dssp CSCSS
T ss_pred cCccc
Confidence 97654
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=135.87 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=75.1
Q ss_pred CCcceEEeCCCCCCC------CHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc-c
Q 012034 26 TKFNNVFVKNLDEST------TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR-E 98 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~------tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~-~ 98 (472)
...++|||+|||+++ |+++|+++|++||.|.+|.+. ..+|+++|||||+|.+.++|.+|++.|||..|.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 457899999999999 789999999999999999988 56889999999999999999999999999999999 9
Q ss_pred eeeeccccc
Q 012034 99 WYVGKAQKK 107 (472)
Q Consensus 99 l~V~~a~~~ 107 (472)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998643
No 136
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=5.8e-17 Score=153.14 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=77.1
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC--CeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG--TITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
..++|||+||++++|+++|+++|++|| .|.+|.|++| .+|++||||||+|++.++|.+||+.||++.|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999999 5899999999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+.....
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 976543
No 137
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.2e-17 Score=133.60 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=70.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCC--ccCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK--KFDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~--~i~g~~l~V~~ 103 (472)
...++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|++.++|.+|++.|++. .|.|+.|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999999999999999999999999998864 799999999999999999998764 49999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 97654
No 138
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=130.14 Aligned_cols=82 Identities=30% Similarity=0.491 Sum_probs=77.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45789999999999999999999999999999999987 88999999999999999999999999999999999999988
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 87 ~~~ 89 (99)
T 1whw_A 87 IKK 89 (99)
T ss_dssp CCS
T ss_pred CCc
Confidence 764
No 139
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-17 Score=135.61 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCC-eeEEEEE-EC-CCCCceeEEEEEeCCHHHHHHHHHHHC--CCccCCccee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGT-ITSAVVM-RD-GDGKSKCFGFVNFENADDAAKAVEALN--GKKFDDREWY 100 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~-I~~v~i~-~d-~~g~skG~aFV~F~~~e~A~~Av~~ln--g~~i~g~~l~ 100 (472)
...++|||+|||+++|+++|+++|++||. |.++.++ .+ .+|+++|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 55 468999999999999999999999996 5899999999
Q ss_pred eeccccchh
Q 012034 101 VGKAQKKSE 109 (472)
Q Consensus 101 V~~a~~~~~ 109 (472)
|.++..+..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 140
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.2e-16 Score=126.46 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=74.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++++++|+++|+.||.|.++.++.+ .++.++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4568999999999999999999999999999999887 578899999999999999999999999999999999999974
No 141
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=129.14 Aligned_cols=80 Identities=31% Similarity=0.529 Sum_probs=76.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++++++|+++|+.||.|.+|+|..+.++.++|||||+|.+.++|.+|++.||+..++|+.|.|.+++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999998863
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=139.58 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=75.9
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE-EEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||+++|+++|+++|+.||.|.+ +.+..+.+|+++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 356789999999999999999999999999988 455555799999999999999999999999 999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 101 a~~~~~ 106 (124)
T 1wel_A 101 ITKKGM 106 (124)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 976543
No 143
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.8e-17 Score=131.86 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=72.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.++.+. +++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3457899999999999999999999999999999998 45899999999999999999999999999999999998
Q ss_pred cc
Q 012034 105 QK 106 (472)
Q Consensus 105 ~~ 106 (472)
..
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 144
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.1e-17 Score=132.44 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=77.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+|||.++|+++|+++|+.||.|.+|.|+++..|.++|||||+|.+.++|.+|+. +++..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 3468999999999999999999999999999999999889999999999999999999998 999999999999999877
Q ss_pred HHHHH
Q 012034 210 KEERR 214 (472)
Q Consensus 210 k~~~~ 214 (472)
...++
T Consensus 89 ~~~~k 93 (103)
T 1s79_A 89 YFAKK 93 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 145
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=3.3e-17 Score=136.61 Aligned_cols=83 Identities=27% Similarity=0.451 Sum_probs=74.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.|. +|+++|||||+|.+.++|.+|++.+ +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 4678899999999999999999999999999999999994 6999999999999999999999975 5999999999999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=136.93 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=77.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCC---eeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGT---ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~---I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
....++|||+|||+++|+++|+++|+.||. |.+|.|+.|.+|+++|||||+|.+.++|.+|++ +|+..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 356789999999999999999999999998 899999999889999999999999999999999 9999999999999
Q ss_pred eccccch
Q 012034 102 GKAQKKS 108 (472)
Q Consensus 102 ~~a~~~~ 108 (472)
.++..+.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987543
No 147
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=3.1e-17 Score=145.81 Aligned_cols=83 Identities=30% Similarity=0.512 Sum_probs=78.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++||.|.+|.|+.| .+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999 48999999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 148
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=140.31 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=79.0
Q ss_pred cceeeeecCCCCccHHHHHHHHhccC--ceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G--~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
.++|||+||++++|+++|+++|+.|| .|.+|+|+.|+ +|.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 46899999999999999999999999 99999999985 7999999999999999999999999999999999999999
Q ss_pred ccHHHHHH
Q 012034 208 QRKEERRA 215 (472)
Q Consensus 208 ~~k~~~~~ 215 (472)
..+..+..
T Consensus 135 ~~~~~~~~ 142 (156)
T 3n9u_C 135 TRQNLSQF 142 (156)
T ss_dssp CHHHHHHH
T ss_pred CCCcchhh
Confidence 88765543
No 149
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=3e-17 Score=131.85 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=71.0
Q ss_pred ceeeeecCCCCccHHHHHHHHhccC--ceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G--~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+|||+||++++|+++|+++|+.|| .|.+++++.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999985 88999999999999999999999999999999999999887
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 150
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.1e-17 Score=136.83 Aligned_cols=83 Identities=31% Similarity=0.558 Sum_probs=77.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+|.|+.| .+++++|||||+|.+.++|.+|++. ++..|.|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34689999999999999999999999999999999999 5799999999999999999999997 999999999999999
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
..+..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
No 151
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=6.9e-17 Score=137.62 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=76.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+|.++.| .+|+++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999998 58999999999999999999999 79999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 152
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.8e-16 Score=128.74 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=77.6
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
+++|||+||+.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999999885 689999999999999999999999999999999999999987
Q ss_pred HHHH
Q 012034 210 KEER 213 (472)
Q Consensus 210 k~~~ 213 (472)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7543
No 153
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=133.16 Aligned_cols=81 Identities=25% Similarity=0.421 Sum_probs=74.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.| .++.+.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3568999999999999999999999999987 5666778999999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 154
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=127.31 Aligned_cols=78 Identities=24% Similarity=0.514 Sum_probs=72.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3568899999999999999999999999999999997 579999999999999999999999999999999999
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 155
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.3e-17 Score=132.18 Aligned_cols=84 Identities=63% Similarity=1.028 Sum_probs=78.8
Q ss_pred cccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 127 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 127 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
.....++|||+||+.++|+++|+++|+.||.|.+|+|..+ ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4456789999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98753
No 156
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=2.2e-16 Score=124.30 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=70.3
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
+..|||+||++.+|+++|+++|++||.|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|++|...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 45799999999999999999999999999999976 5999999999999999999999999999999999999543
No 157
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-17 Score=136.51 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=71.3
Q ss_pred cCCcceEEeCCCCCC-CCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC--CccCCcceee
Q 012034 25 KTKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYV 101 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng--~~i~g~~l~V 101 (472)
....++|||+|||++ +|+++|+++|++||.|.+|.|++ +||||||+|++.++|.+|++.|++ ..|.|+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356889999999998 99999999999999999999974 489999999999999999998864 5699999999
Q ss_pred eccccch
Q 012034 102 GKAQKKS 108 (472)
Q Consensus 102 ~~a~~~~ 108 (472)
.+++++.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9997654
No 158
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=128.31 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=76.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+||+.++++++|+++|+.||.|.+++++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45689999999999999999999999999999999985 58899999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=3.3e-16 Score=145.76 Aligned_cols=107 Identities=27% Similarity=0.518 Sum_probs=91.9
Q ss_pred cccCeeEEEcCcccchhhhhh-----hccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEE
Q 012034 2 LINDKQVFVGHFLRKQERETV-----AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVN 75 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~-----~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~ 75 (472)
.|+|+.|.|........+... ......++|||+|||.++|+++|+++|++||.|.+|.+..+ .+|+++|||||+
T Consensus 94 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 173 (216)
T 2qfj_A 94 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIE 173 (216)
T ss_dssp CCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred eeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEE
Confidence 467888888776655543221 12467899999999999999999999999999999999999 589999999999
Q ss_pred eCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 76 FENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 76 F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
|.+.++|.+|++.||+..|+|+.|.|.++..+.
T Consensus 174 F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 174 YEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred ecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999999999999999999999999999987653
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.9e-16 Score=145.10 Aligned_cols=108 Identities=24% Similarity=0.410 Sum_probs=85.7
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e 80 (472)
.|+|+.|.|.....+............++|||+|||.++|+++|+++|++||.|.+|.++.|. +|+++|||||+|.+.+
T Consensus 78 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp EETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 478888888877666554433334567899999999999999999999999999999999994 8999999999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeeccccchhH
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQKKSER 110 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~~~~~~ 110 (472)
+|.+|++. ++..|+|+.|.|.++..+.+.
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99999986 899999999999999877654
No 161
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=1.6e-16 Score=131.13 Aligned_cols=82 Identities=33% Similarity=0.603 Sum_probs=77.8
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecC---eeEEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS---KPLYVAV 206 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g---k~l~V~~ 206 (472)
..++|||+||+.++++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|.|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 4678999999999999999999999999999999999899999999999999999999999999999998 9999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
+..+.
T Consensus 94 a~~~~ 98 (105)
T 2dnh_A 94 ADTDK 98 (105)
T ss_dssp SCSSC
T ss_pred CccCc
Confidence 98764
No 162
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2.9e-16 Score=130.12 Aligned_cols=81 Identities=31% Similarity=0.490 Sum_probs=76.9
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
....++|||+||+.++|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 012034 208 Q 208 (472)
Q Consensus 208 ~ 208 (472)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=134.18 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=77.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++|+++|+++|+.||.|++|.|..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 86 ~ 86 (116)
T 2fy1_A 86 P 86 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 164
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.8e-16 Score=133.27 Aligned_cols=81 Identities=37% Similarity=0.583 Sum_probs=76.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999986 78999999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 165
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=5.1e-17 Score=135.60 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=72.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++|| +|..+.|..+ +++|||||+|++.++|++|++.|||..|.|+.|.|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 5578999999999999999999999999 9999888543 57999999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 166
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=4.8e-17 Score=132.28 Aligned_cols=84 Identities=26% Similarity=0.460 Sum_probs=76.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHH----HHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
....++|||+|||.++|+++|+ ++|++||.|.+|.+.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3567899999999999999999 9999999999998873 577899999999999999999999999999999999
Q ss_pred eeccccchhH
Q 012034 101 VGKAQKKSER 110 (472)
Q Consensus 101 V~~a~~~~~~ 110 (472)
|.++..+...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999877654
No 167
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.8e-17 Score=131.95 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=71.9
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC--cEecCeeEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVA 205 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g--~~i~gk~l~V~ 205 (472)
....++|||+||++++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.+++ ..+.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345679999999999999999999999999999999976 89999999999999999998864 78999999999
Q ss_pred EcccHH
Q 012034 206 VAQRKE 211 (472)
Q Consensus 206 ~a~~k~ 211 (472)
+++.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 987653
No 168
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=2.2e-17 Score=170.39 Aligned_cols=162 Identities=18% Similarity=0.300 Sum_probs=110.2
Q ss_pred HHHHHhcCCCeeEEEEEEC---CCCCceeEE-----EEEeCCHHHHHHHHHHHCCCccCCcceeeeccccchhHHHHHHH
Q 012034 45 LKKIFGEYGTITSAVVMRD---GDGKSKCFG-----FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 116 (472)
Q Consensus 45 L~~~F~~fG~I~~v~i~~d---~~g~skG~a-----FV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~ 116 (472)
|.++|..+|+|..|..+.. ...+..+|+ |+.|.+.+++..++..++......+.. ..+....+..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~----~~k~~~~~~~~~~ 84 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKR----REKIERRQQEVET 84 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHH----HHHHHHHHHHHHH
Confidence 8899999999988744332 111223344 888888777666654433222211110 0000000111110
Q ss_pred HHH---hhhhhhccccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHh
Q 012034 117 QFE---QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM 192 (472)
Q Consensus 117 ~~~---~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l 192 (472)
... ............++|||+||+..+|+++|+++|+.||.|+.|.|+.+. +|.++|||||+|.+.++|.+||..|
T Consensus 85 ~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 85 ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 000 001111122344689999999999999999999999999999999884 7899999999999999999999999
Q ss_pred CCcEecCeeEEEEEcccH
Q 012034 193 NGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 193 ~g~~i~gk~l~V~~a~~k 210 (472)
||..|.|+.|.|.|+..+
T Consensus 165 ng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGR 182 (437)
T ss_pred CCCEECCEEEEEEEeCCC
Confidence 999999999999998754
No 169
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=126.76 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=74.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||.++++++|+++|+.||.|.++++..+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.|++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 45689999999999999999999999999999999886 58899999999999999999999999999999999999974
No 170
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=133.70 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=79.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCce-EEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I-~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|.++|||||+|.+.++|.+|++. |+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 45789999999999999999999999999 899999999999999999999999999999977 9999999999999999
Q ss_pred cHHHHHHH
Q 012034 209 RKEERRAR 216 (472)
Q Consensus 209 ~k~~~~~~ 216 (472)
.++.+...
T Consensus 93 ~~~~~~~~ 100 (114)
T 2cpy_A 93 LEDMREIE 100 (114)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766544
No 171
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=2.2e-16 Score=141.60 Aligned_cols=85 Identities=26% Similarity=0.379 Sum_probs=78.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++||.|.+|.|+.+ .+|+++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999999 58999999999999999999999999999999999999999
Q ss_pred ccchhH
Q 012034 105 QKKSER 110 (472)
Q Consensus 105 ~~~~~~ 110 (472)
..+..+
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-16 Score=139.46 Aligned_cols=101 Identities=29% Similarity=0.494 Sum_probs=87.3
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e 80 (472)
.|+|+.+.|......... .....++|||+|||.++|+++|+++|++||.|.++.+..+ .+|+++|||||+|.+.+
T Consensus 65 ~~~g~~i~v~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 65 QIENNIVKINWAFQSQQS----SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp EETTEECEEEECCCCCCC----CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred ccCCCeeEEEEcCCCCCC----CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 356677777655443321 2356789999999999999999999999999999999999 68999999999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeecccc
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
+|.+|++.|||..++|+.|.|.++.+
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999999999999863
No 173
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=130.07 Aligned_cols=83 Identities=30% Similarity=0.452 Sum_probs=77.8
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
....++|||+||+.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456799999999999999999999999999999999985 789999999999999999999999999999999999999
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
+..+
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8765
No 174
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=139.05 Aligned_cols=80 Identities=33% Similarity=0.428 Sum_probs=75.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456899999999999999999999999999999999998 6799999999999999999999999999999999999987
Q ss_pred c
Q 012034 104 A 104 (472)
Q Consensus 104 a 104 (472)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=6.9e-17 Score=132.74 Aligned_cols=82 Identities=30% Similarity=0.552 Sum_probs=76.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|+.||.|.+|.++.|.+|+++|||||+|++.++|.+|++ ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999998 9999999999999997
Q ss_pred cchh
Q 012034 106 KKSE 109 (472)
Q Consensus 106 ~~~~ 109 (472)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6654
No 176
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=126.52 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=75.6
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+|||.++++++|+++|+.||.|.+|.++.+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 345689999999999999999999999999999999885 5789999999999999999999999999999999999998
Q ss_pred cc
Q 012034 208 QR 209 (472)
Q Consensus 208 ~~ 209 (472)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 177
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=3.3e-16 Score=131.55 Aligned_cols=82 Identities=30% Similarity=0.556 Sum_probs=77.4
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999999985 7899999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 765
No 178
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=4e-17 Score=126.18 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=69.8
Q ss_pred eEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 30 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
+|||+|||.++|+++|+++|++||.|.++.+..+ .+|+++|||||+|++.++|.+|++. ++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5999999999999999999999999999999988 4689999999999999999999985 899999999999875
No 179
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=128.28 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=76.2
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
....++|||+||+.++|+++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345678999999999999999999999999999999998655 8999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 180
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=131.02 Aligned_cols=81 Identities=31% Similarity=0.571 Sum_probs=77.0
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++++++|+++|+.||.|.+|+|+.++++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999865
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
.
T Consensus 94 ~ 94 (114)
T 2do0_A 94 A 94 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 181
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=128.98 Aligned_cols=82 Identities=35% Similarity=0.640 Sum_probs=76.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEE-EEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v-~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
.+++|||+|||.++++++|+++|+.||.|.++ +|+.+ .++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999 99988 57899999999999999999999999999999999999998
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..+.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7653
No 182
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=129.22 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=71.5
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcE--ecCeeEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYVA 205 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~--i~gk~l~V~ 205 (472)
...+.+|||+|||+++|+++|+++|++||.|++++++++ ||||||+|.+.++|.+|++.+++.. +.|++|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 345678999999999999999999999999999999864 8999999999999999999999875 789999999
Q ss_pred EcccH
Q 012034 206 VAQRK 210 (472)
Q Consensus 206 ~a~~k 210 (472)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99875
No 183
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=128.72 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=73.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC--Ccceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~--g~~l~V~ 102 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.||+..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 356789999999999999999999999999999988764 789999999999999999999999999 9999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++..+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997653
No 184
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=127.64 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=74.1
Q ss_pred ccceeeeecCCCCccHHHHH----HHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~----~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
.+++|||+||++++++++|+ ++|+.||.|.+|+|+.+..+ +|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45789999999999999999 99999999999999988765 8999999999999999999999999999999999
Q ss_pred EcccH
Q 012034 206 VAQRK 210 (472)
Q Consensus 206 ~a~~k 210 (472)
++..+
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 98654
No 185
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=2.4e-16 Score=131.13 Aligned_cols=78 Identities=28% Similarity=0.555 Sum_probs=73.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4678999999999999999999999999999999998 689999999999999999999999999999999999
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
..+..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87654
No 186
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=132.01 Aligned_cols=77 Identities=32% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC-----ccee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-----REWY 100 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g-----~~l~ 100 (472)
...++|||+|||+++|+++|+++|++||+|.+|.|+.| |||||+|++.++|.+||+.||++.|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 46789999999999999999999999999999999887 899999999999999999999999999 9999
Q ss_pred eeccccch
Q 012034 101 VGKAQKKS 108 (472)
Q Consensus 101 V~~a~~~~ 108 (472)
|.++..+.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99997654
No 187
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.4e-16 Score=150.43 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=79.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccC--ceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G--~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
..++|||+||++++|+++|+++|+.|| .|++|+|++++ +|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999999985 899999999999999999999999999999999999999
Q ss_pred cccHHHHHH
Q 012034 207 AQRKEERRA 215 (472)
Q Consensus 207 a~~k~~~~~ 215 (472)
+..+.....
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 988765544
No 188
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=2e-16 Score=131.82 Aligned_cols=84 Identities=24% Similarity=0.458 Sum_probs=78.0
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
...+++|||+||+.++|+++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999998884 788999999999999999999999999999999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97653
No 189
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=129.81 Aligned_cols=78 Identities=28% Similarity=0.459 Sum_probs=72.9
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 56789999999999999999999999999999999854 7999999999999999999999999999999999997
Q ss_pred cch
Q 012034 106 KKS 108 (472)
Q Consensus 106 ~~~ 108 (472)
.+.
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 190
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=130.75 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=74.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 467899999999999999999999999999999999987 789999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 191
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=129.65 Aligned_cols=82 Identities=24% Similarity=0.484 Sum_probs=77.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..+++|||+||+.++++++|+++|+.||.|.+|.|..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456789999999999999999999999999999999885 5889999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 192
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=129.92 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=77.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 456789999999999999999999999999999999986 7899999999999999999999999999999999999998
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..+.
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 7653
No 193
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=5.2e-17 Score=140.72 Aligned_cols=83 Identities=30% Similarity=0.524 Sum_probs=78.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++||.|.+|.|+.+. +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999984 7999999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 194
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-16 Score=127.56 Aligned_cols=82 Identities=32% Similarity=0.482 Sum_probs=75.9
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34678999999999999999999999999999999998544 79999999999999999999999999999999999988
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 753
No 195
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=127.59 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=75.7
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999999885 68899999999999999999998 9999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 196
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=128.40 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=72.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35578999999999999999999999999997 666654 67899999999999999999999999999999999998
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 197
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=127.89 Aligned_cols=80 Identities=25% Similarity=0.495 Sum_probs=75.1
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEE--------EEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~--------v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
...++|||+||+.++++++|+++|+.||.|.+ ++++.++ +|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34578999999999999999999999999999 9999884 68999999999999999999999999999999
Q ss_pred eeEEEEEcc
Q 012034 200 KPLYVAVAQ 208 (472)
Q Consensus 200 k~l~V~~a~ 208 (472)
+.|+|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 198
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=3.6e-16 Score=132.18 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=77.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCc---eEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~---I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
..++|||+||++++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4578999999999999999999999999 899999999889999999999999999999998 999999999999999
Q ss_pred cccHHHH
Q 012034 207 AQRKEER 213 (472)
Q Consensus 207 a~~k~~~ 213 (472)
+..++..
T Consensus 95 a~~~~~~ 101 (118)
T 2db1_A 95 SHRTEMD 101 (118)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9876643
No 199
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=129.05 Aligned_cols=81 Identities=28% Similarity=0.467 Sum_probs=76.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 45789999999999999999999999999999998884 68899999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 91 ~~ 92 (102)
T 2cqb_A 91 PM 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3.4e-16 Score=140.36 Aligned_cols=98 Identities=18% Similarity=0.399 Sum_probs=85.8
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e 80 (472)
.|+|+.+.|........ ....++|||+|||.++|+++|+++|++||.|.++.+..+. +|+++|||||+|.+.+
T Consensus 74 ~~~g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 74 IFQGQSLKIRRPHDYQP------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp EETTEECEEECCSSCCC------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred EecCceeeecCCcccCC------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 46677777765433221 2447889999999999999999999999999999999994 8999999999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeeccc
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
+|.+|++.|||..++|+.|.|.+|.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999874
No 201
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=129.52 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=77.6
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC--CCCcccEEEEEcCCHHHHHHHHHHh-CCcEecCeeEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 204 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~--~g~s~g~afV~f~s~~~A~~Ai~~l-~g~~i~gk~l~V 204 (472)
....++|||+||+.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3456789999999999999999999999999999999884 7899999999999999999999999 999999999999
Q ss_pred EEcccH
Q 012034 205 AVAQRK 210 (472)
Q Consensus 205 ~~a~~k 210 (472)
.++..+
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998765
No 202
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=133.36 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=71.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|++.||+..|.|+.|.|.|+.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3578999999999999999999999999999998864 58999999999999999999999999999999999986
Q ss_pred cc
Q 012034 106 KK 107 (472)
Q Consensus 106 ~~ 107 (472)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 203
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=125.20 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=71.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH-CCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l-ng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|++.| ++..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 356789999999999999999999999999999999864 899999999999999999999 99999999999998
Q ss_pred cc
Q 012034 104 AQ 105 (472)
Q Consensus 104 a~ 105 (472)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 204
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-17 Score=136.00 Aligned_cols=81 Identities=31% Similarity=0.454 Sum_probs=73.7
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.+ .++.+ .+|+++|||||+|.+.++|.+|++ ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999988 44444 678999999999999999999998 9999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 205
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=128.07 Aligned_cols=81 Identities=37% Similarity=0.667 Sum_probs=75.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCC--C--CcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--G--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~--g--~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..++|||+||+.++++++|+++|+.||.|.+|+|..+.. | .++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356899999999999999999999999999999988753 3 789999999999999999999999999999999999
Q ss_pred EcccH
Q 012034 206 VAQRK 210 (472)
Q Consensus 206 ~a~~k 210 (472)
++..+
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98765
No 206
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=5.1e-17 Score=141.15 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=75.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||+++|+++|+++|++|| |.+|.|++|.+|+++|||||+|++.++|++|| .+|+..|.++.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 5677899999999999999999999999 67999999988999999999999999999999 789999999999999887
Q ss_pred cchh
Q 012034 106 KKSE 109 (472)
Q Consensus 106 ~~~~ 109 (472)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 207
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=4.9e-16 Score=126.61 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=71.2
Q ss_pred cCCcceEEeCCCCC-CCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||. ++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 46789999999998 99999999999999999999882 78999999999999999999999999999999999
Q ss_pred cccc
Q 012034 104 AQKK 107 (472)
Q Consensus 104 a~~~ 107 (472)
+..+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 208
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=130.54 Aligned_cols=82 Identities=28% Similarity=0.474 Sum_probs=76.0
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
....++|||+||+.++++++|+++|+.||.|.+|++..+.. .++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44567899999999999999999999999999999998854 48999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 209
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=130.45 Aligned_cols=82 Identities=37% Similarity=0.567 Sum_probs=77.6
Q ss_pred cccceeeeecCCCCccHHHHHHHHhc-cCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcE-ecCeeEEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM-IVSKPLYVAV 206 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~-~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~-i~gk~l~V~~ 206 (472)
...++|||+||+.++|+++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.||+.. ++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35678999999999999999999999 999999999999899999999999999999999999999999 9999999999
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
+..+
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8765
No 210
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.1e-16 Score=132.35 Aligned_cols=81 Identities=36% Similarity=0.548 Sum_probs=75.1
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999884 689999999999999999999999999999999999998
Q ss_pred cc
Q 012034 207 AQ 208 (472)
Q Consensus 207 a~ 208 (472)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 211
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=5.4e-16 Score=123.87 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=74.4
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.++|||+|||.++++++|+++|+.||.|.++++..+. ++.++|||||+|.+.++|.+|+ .+||..+.|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3589999999999999999999999999999999885 7899999999999999999999 9999999999999999865
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 212
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=129.04 Aligned_cols=86 Identities=27% Similarity=0.490 Sum_probs=79.7
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.++|||+||+.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 3589999999999999999999999999999999885 788999999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 012034 210 KEERRAR 216 (472)
Q Consensus 210 k~~~~~~ 216 (472)
+..+...
T Consensus 88 ~~~~~~~ 94 (104)
T 1p1t_A 88 EKNKEEL 94 (104)
T ss_dssp TTHHHHH
T ss_pred ccchhhh
Confidence 8766543
No 213
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=128.57 Aligned_cols=82 Identities=37% Similarity=0.515 Sum_probs=74.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||.++|+++|+++|+.|+ ++.++.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 46789999999999999999999999874 5677777 5899999999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987653
No 214
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=3.4e-16 Score=133.29 Aligned_cols=77 Identities=21% Similarity=0.401 Sum_probs=73.3
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
++|||+||+.++|+++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999884 7899999999999999999999 8999999999999999864
No 215
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=2.8e-16 Score=142.52 Aligned_cols=83 Identities=30% Similarity=0.428 Sum_probs=78.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.|..+.+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cch
Q 012034 106 KKS 108 (472)
Q Consensus 106 ~~~ 108 (472)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 643
No 216
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=128.76 Aligned_cols=82 Identities=28% Similarity=0.525 Sum_probs=76.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45689999999999999999999999999999999885 67899999999999999999999999999999999999987
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 91 ~~~ 93 (102)
T 1x5s_A 91 KSS 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 217
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=1.2e-16 Score=136.18 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCee--EEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTIT--SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~--~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
...++|||+|||+++|+++|+++|+.| .|. +|.|++|.+|+++|||||+|++.++|++||+. ++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 457889999999999999999999999 676 89999998899999999999999999999985 78999999999998
Q ss_pred cccc
Q 012034 104 AQKK 107 (472)
Q Consensus 104 a~~~ 107 (472)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 218
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-17 Score=140.57 Aligned_cols=86 Identities=27% Similarity=0.413 Sum_probs=79.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeE--------EEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccC
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS--------AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFD 95 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~ 95 (472)
....++|||+|||.++|+++|+++|++||.|.+ |.++.| .+++++|||||+|.+.++|.+|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999999 889988 57999999999999999999999999999999
Q ss_pred CcceeeeccccchhH
Q 012034 96 DREWYVGKAQKKSER 110 (472)
Q Consensus 96 g~~l~V~~a~~~~~~ 110 (472)
|+.|.|.++..+..+
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 219
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=130.38 Aligned_cols=82 Identities=23% Similarity=0.477 Sum_probs=76.7
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.++|||+||+.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4589999999999999999999999999999999886 4889999999999999999999 9999999999999999987
Q ss_pred HHHH
Q 012034 210 KEER 213 (472)
Q Consensus 210 k~~~ 213 (472)
+..+
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 7654
No 220
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-16 Score=129.94 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=73.1
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|+.||.|..+ +.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3567899999999999999999999999998766 457889999999999999999999999999999999999998
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7653
No 221
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.4e-16 Score=128.82 Aligned_cols=82 Identities=30% Similarity=0.519 Sum_probs=76.9
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhC------CcEecCee
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN------GKMIVSKP 201 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~------g~~i~gk~ 201 (472)
...++|||+||++++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.+| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356789999999999999999999999999999999885 68899999999999999999999999 99999999
Q ss_pred EEEEEcccH
Q 012034 202 LYVAVAQRK 210 (472)
Q Consensus 202 l~V~~a~~k 210 (472)
|.|.++..+
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999998765
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=5.9e-16 Score=131.91 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=77.6
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..+++|||+||+.++++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 223
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=129.04 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=76.7
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|.+|.|..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 345789999999999999999999999999999999886 5889999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 764
No 224
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=4.2e-16 Score=125.38 Aligned_cols=80 Identities=29% Similarity=0.470 Sum_probs=75.4
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+|||.++++++|+++|+.||.|.+++|.++ ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4578999999999999999999999999999999985 788999999999999999999999999999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 225
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=3.2e-16 Score=135.59 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=77.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCc---eEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~---I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
..++|||+||++++|+++|+++|+.||. |.+|+|+++++|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4578999999999999999999999999 899999999889999999999999999999998 999999999999999
Q ss_pred cccHHHH
Q 012034 207 AQRKEER 213 (472)
Q Consensus 207 a~~k~~~ 213 (472)
+..++..
T Consensus 122 a~~~e~~ 128 (136)
T 2hgl_A 122 SHRTEMD 128 (136)
T ss_dssp CCHHHHH
T ss_pred CChHHHH
Confidence 9877643
No 226
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.5e-16 Score=126.49 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=71.3
Q ss_pred cCCcceEEeCCCCC-CCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeec
Q 012034 25 KTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 103 (472)
Q Consensus 25 ~~~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~ 103 (472)
....++|||+|||. ++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35688999999998 99999999999999999999984 78999999999999999999999999999999999
Q ss_pred cccchh
Q 012034 104 AQKKSE 109 (472)
Q Consensus 104 a~~~~~ 109 (472)
+..+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 976554
No 227
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=132.23 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||.++|+++|+++|++||.|.++.+..+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999954332222 27899999999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7654
No 228
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=4.3e-16 Score=137.29 Aligned_cols=79 Identities=32% Similarity=0.479 Sum_probs=74.3
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||+++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 356899999999999999999999999999999999887 6899999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 229
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=129.94 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=77.1
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceE--------EEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEec
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--------SCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 198 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~--------~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~ 198 (472)
....++|||+||+.++|+++|+++|+.||.|. .|+|+.+ .++.++|||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999999 6999988 57899999999999999999999999999999
Q ss_pred CeeEEEEEcccH
Q 012034 199 SKPLYVAVAQRK 210 (472)
Q Consensus 199 gk~l~V~~a~~k 210 (472)
|+.|+|.++..+
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998765
No 230
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=123.22 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=75.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+|||+++++++|+++|+.| .|.+|+|+.+.+|.++|||||+|.+.++|.+|+. +|+..++|+.|.|.++..
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45789999999999999999999999 9999999999889999999999999999999999 999999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 87 ~ 87 (91)
T 2dgw_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 231
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=125.36 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=74.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCC--CCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~--g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..++|||+||+.++|+++|+++|+.||.|.++.+..+.. +.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999999988763 338999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 232
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=129.24 Aligned_cols=81 Identities=35% Similarity=0.621 Sum_probs=76.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++++++|+++|+.||.|.+|+++++. +|.++|||||+|.+.++|.+|++.+||..+.|+.|.|.++.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 45789999999999999999999999999999999884 68899999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 105 ~k 106 (108)
T 2jrs_A 105 ER 106 (108)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 233
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=126.75 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=74.8
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3589999999999999999999999 899999999988999999999999999999999 79999999999999998766
Q ss_pred HH
Q 012034 211 EE 212 (472)
Q Consensus 211 ~~ 212 (472)
+-
T Consensus 94 ~~ 95 (109)
T 2dnn_A 94 QW 95 (109)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 234
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.9e-16 Score=127.22 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=75.4
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCC--CCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~--g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
...++|||+||+.++++++|+++|+.|| |.+|.|+.+.. +.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4557999999999999999999999999 99999998864 899999999999999999999 9999999999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
+..+.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 235
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.7e-16 Score=129.44 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=75.6
Q ss_pred ccccceeeeecCCCCccHHHHH---HHHhccCceEEEEEeeCCC----CCcccEEEEEcCCHHHHHHHHHHhCCcEecCe
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~---~~F~~~G~I~~v~i~~~~~----g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk 200 (472)
....++|||+|||+++++++|+ ++|++||.|.+|+|.++.. +.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999988752 35679999999999999999999999999999
Q ss_pred eEEEEEcccH
Q 012034 201 PLYVAVAQRK 210 (472)
Q Consensus 201 ~l~V~~a~~k 210 (472)
.|.|.++..+
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998765
No 236
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-16 Score=127.80 Aligned_cols=78 Identities=23% Similarity=0.501 Sum_probs=70.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCC-eeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC-CccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG-KKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~-I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng-~~i~g~~l~V~ 102 (472)
....++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 356789999999999999999999999999 6666663 479999999999999999999999 99999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++..+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 237
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=126.05 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=75.8
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceE-EEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee----EE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP----LY 203 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~-~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~----l~ 203 (472)
..++|||+||+.++++++|+++|+.||.|. +++|++++ ++.++|||||+|.+.++|.+|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457899999999999999999999999999 99999985 7899999999999999999999999999999999 99
Q ss_pred EEEcccH
Q 012034 204 VAVAQRK 210 (472)
Q Consensus 204 V~~a~~k 210 (472)
|.|+...
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9988643
No 238
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=128.87 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=70.1
Q ss_pred ccceeeeecCCC-CccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCc--EecCeeEEEEE
Q 012034 130 QGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAV 206 (472)
Q Consensus 130 ~~~~l~V~nL~~-~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~--~i~gk~l~V~~ 206 (472)
.+++|||+||++ ++|+++|+++|+.||.|.+|.|+++ +|||||+|.+.++|.+|++.||+. .|.|++|+|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 467899999999 9999999999999999999999876 689999999999999999998864 59999999999
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
++.+
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9854
No 239
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.4e-15 Score=121.05 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=72.1
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+|||.++++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|.+|++ +++..++|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999885 68999999999999999999995 5888999999999875
No 240
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=4.6e-16 Score=128.11 Aligned_cols=77 Identities=30% Similarity=0.553 Sum_probs=71.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||.++|+++|+++|++||.|.+|.++ +|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 567899999999999999999999999999999886 4599999999999999999999999999999999997
Q ss_pred cchh
Q 012034 106 KKSE 109 (472)
Q Consensus 106 ~~~~ 109 (472)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6543
No 241
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=2.4e-16 Score=140.61 Aligned_cols=99 Identities=24% Similarity=0.496 Sum_probs=87.1
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e 80 (472)
.|+|+.|.|.....+... ...++|||+|||.++|+++|+++|++||.|.++.+..| .+|+++|||||+|.+.+
T Consensus 67 ~~~g~~i~v~~~~~~~~~------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 67 ILDGKVIDPKRAIPRDEQ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 140 (167)
T ss_dssp EETTEECCCEECCCHHHH------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH
T ss_pred ccCCeEcccccccchhhc------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH
Confidence 367788777766554433 23678999999999999999999999999999999998 47999999999999999
Q ss_pred HHHHHHHHHCCCccCCcceeeeccccc
Q 012034 81 DAAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
+|.+|++ +++..+.|+.|.|.++.++
T Consensus 141 ~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999998 8999999999999999765
No 242
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=3.5e-16 Score=120.85 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=70.2
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
+|||+|||.++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++ +|+..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999886 78999999999999999999997 9999999999999875
No 243
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=5.9e-16 Score=127.99 Aligned_cols=82 Identities=28% Similarity=0.591 Sum_probs=76.4
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEe---cCeeEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLYV 204 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i---~gk~l~V 204 (472)
...++|||+||+.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 345789999999999999999999999999999999986 588999999999999999999999999988 8999999
Q ss_pred EEcccH
Q 012034 205 AVAQRK 210 (472)
Q Consensus 205 ~~a~~k 210 (472)
.++..+
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 998765
No 244
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.9e-16 Score=124.27 Aligned_cols=77 Identities=23% Similarity=0.483 Sum_probs=71.7
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.+|.+.+ +||||+|++.++|.+|++.||+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999874 49999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 245
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=5.7e-16 Score=133.05 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=76.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++.|||..|+|++|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356789999999999999999999999999999999885 6789999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 765
No 246
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-16 Score=131.36 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=69.0
Q ss_pred cCCcceEEe--CCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc-----CCc
Q 012034 25 KTKFNNVFV--KNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF-----DDR 97 (472)
Q Consensus 25 ~~~~~~l~V--~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i-----~g~ 97 (472)
....++||| +||++++|+++|+++|++||+|.+|.+.. +||||||+|++.++|++|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 456788999 77999999999999999999999988764 379999999999999999999999988 678
Q ss_pred ceeeecccc
Q 012034 98 EWYVGKAQK 106 (472)
Q Consensus 98 ~l~V~~a~~ 106 (472)
.|+|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 899988754
No 247
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=125.45 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=71.1
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh--CCcEecCeeEEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM--NGKMIVSKPLYVAV 206 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l--~g~~i~gk~l~V~~ 206 (472)
..+++|||+||++++++++|+++|+.||.|.+|.++++ ||||||+|.+.++|.+|++.+ ++..+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 35678999999999999999999999999999999875 899999999999999999976 56789999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
+..+.
T Consensus 88 a~~~~ 92 (101)
T 2cq1_A 88 SNHKE 92 (101)
T ss_dssp CSCSS
T ss_pred cCccc
Confidence 98653
No 248
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=1.1e-15 Score=140.25 Aligned_cols=107 Identities=17% Similarity=0.367 Sum_probs=90.4
Q ss_pred cccCeeEEEcCcccchhhhh--------------hhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CC
Q 012034 2 LINDKQVFVGHFLRKQERET--------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG 66 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~--------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g 66 (472)
.|+|+.|.|........... .......++|||+|||.++|+++|+++|++||.|.++.+..+. +|
T Consensus 74 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~ 153 (198)
T 2yh0_A 74 IFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 153 (198)
T ss_dssp EETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC
T ss_pred EEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC
Confidence 46788888876554422110 0012467999999999999999999999999999999999995 89
Q ss_pred CceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 67 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 67 ~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++..+.
T Consensus 154 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 154 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp SEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999999987653
No 249
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=126.73 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=73.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+.++|+++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34578999999999999999999999999999999765 5689999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 250
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=2e-15 Score=134.69 Aligned_cols=97 Identities=30% Similarity=0.488 Sum_probs=84.2
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e 80 (472)
.|+|+.|.|........ ....++|||+|||.++|+++|+++|++||.|.++.+..+. +|+++|||||+|.+.+
T Consensus 69 ~~~g~~l~v~~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 69 TVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp EETTEECEEEECCCCSS------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EeCCcEEEEEecCCCcc------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 35677777765443322 2457899999999999999999999999999999999996 8999999999999999
Q ss_pred HHHHHHHHHCCCccCC--cceeeecc
Q 012034 81 DAAKAVEALNGKKFDD--REWYVGKA 104 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g--~~l~V~~a 104 (472)
+|.+|++.|||..+.| +.|.|.+|
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999988 99999875
No 251
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=128.59 Aligned_cols=79 Identities=24% Similarity=0.448 Sum_probs=73.6
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC--CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~--~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..++|||+||+.++++++|+++|+.|| |.+|+|+.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 457899999999999999999999999 9999999986 7899999999999999999999 99999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 764
No 252
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=8.6e-16 Score=133.48 Aligned_cols=82 Identities=34% Similarity=0.521 Sum_probs=76.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|++|+|+.++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999999885 5789999999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 253
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=5e-16 Score=124.08 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||+++|+++|+++|++| .|.++.+. +++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 457889999999999999999999999 99999884 679999999999999999999999999999999999986
Q ss_pred cc
Q 012034 106 KK 107 (472)
Q Consensus 106 ~~ 107 (472)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 254
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=137.54 Aligned_cols=85 Identities=28% Similarity=0.386 Sum_probs=74.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEE------EEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcce
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA------VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 99 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v------~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l 99 (472)
...++|||+|||+++|+++|+++|++||.|.++ .+....+|+++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 467899999999999999999999999999874 12222578999999999999999999999999999999999
Q ss_pred eeeccccchhH
Q 012034 100 YVGKAQKKSER 110 (472)
Q Consensus 100 ~V~~a~~~~~~ 110 (472)
.|.++.....+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999765543
No 255
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=125.26 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=74.6
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.|| |.+|+|+.+. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3467899999999999999999999997 9999999986 5889999999999999999999 99999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 256
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=128.22 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=75.8
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
....++|||+||+.++|+++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3456789999999999999999999999999999999885 689999999999999999999999998 89999999999
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8654
No 257
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=9.7e-16 Score=130.85 Aligned_cols=82 Identities=24% Similarity=0.484 Sum_probs=77.3
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..+++|||+||+.++|+++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 446789999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 258
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.7e-16 Score=129.38 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=71.6
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC--cEecCeeEEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVAV 206 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g--~~i~gk~l~V~~ 206 (472)
..+++|||+||++++|+++|+++|+.||.|++|+|+++ ||||||+|.+.++|.+|++.+++ ..|.|++|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34678999999999999999999999999999999986 89999999999999999999874 689999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
++.++
T Consensus 104 a~~k~ 108 (119)
T 2ad9_A 104 SNHKE 108 (119)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 97653
No 259
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=123.12 Aligned_cols=77 Identities=26% Similarity=0.454 Sum_probs=71.4
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|||.++|+++|+++|++||.|.++.+++ +||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 35688999999999999999999999999999999974 49999999999999999999999999999999999
Q ss_pred ccch
Q 012034 105 QKKS 108 (472)
Q Consensus 105 ~~~~ 108 (472)
..+.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 260
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=8.8e-16 Score=131.31 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=75.5
Q ss_pred cccceeeeecCCCCccHHHHH----HHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~----~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
..+++|||+||++.+++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|.+|+..|||..+.|++|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 346789999999999999876 6999999999988864 5789999999999999999999999999999999999
Q ss_pred EEcccHHHHH
Q 012034 205 AVAQRKEERR 214 (472)
Q Consensus 205 ~~a~~k~~~~ 214 (472)
.|+..+....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9998876544
No 261
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.2e-15 Score=136.80 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=75.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC---Ccceeee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD---DREWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~---g~~l~V~ 102 (472)
...++|||+|||.++|+++|+++|++||.|.++.+..+.+|+++|||||+|.+.++|.+|++.|||..+. ++.|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3678999999999999999999999999999999999999999999999999999999999999998876 4899999
Q ss_pred ccc
Q 012034 103 KAQ 105 (472)
Q Consensus 103 ~a~ 105 (472)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 262
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.5e-15 Score=134.48 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=72.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC--cceeeec
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--REWYVGK 103 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g--~~l~V~~ 103 (472)
.+-.+|||+||++++|+++|+++|++||+|.+|+|..+ +++|||||+|++.++|.+|++.|||..|.| +.|+|.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 45677999999999999999999999999999999765 358999999999999999999999999965 9999999
Q ss_pred cccc
Q 012034 104 AQKK 107 (472)
Q Consensus 104 a~~~ 107 (472)
++.+
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9765
No 263
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=127.82 Aligned_cols=81 Identities=33% Similarity=0.650 Sum_probs=75.8
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe--------cCee
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--------VSKP 201 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i--------~gk~ 201 (472)
..++|||+||+.++|+++|+++|+.||.|.+|+|+.+.++.++|||||+|.+.++|.+|++.|||..+ .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 45789999999999999999999999999999999998899999999999999999999999999999 5788
Q ss_pred EEEEEcccH
Q 012034 202 LYVAVAQRK 210 (472)
Q Consensus 202 l~V~~a~~k 210 (472)
|.|.|+..+
T Consensus 104 l~v~~a~p~ 112 (114)
T 1x5o_A 104 LLCKFSGPS 112 (114)
T ss_dssp BEEEECCCS
T ss_pred eeEEccCCC
Confidence 999998743
No 264
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=8.6e-16 Score=138.29 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=85.8
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~ 81 (472)
.|+|++|.|.....+.... ....++|||+|||.++|+++|+++|++||.|..+ +.+++++|||||+|.+.++
T Consensus 77 ~~~g~~l~v~~~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 77 KVFGNEIKLEKPKGRDSKK----VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp EETTEEEEEECCCCSSCST----TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred EeCCeEEEEecCCCccccc----cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 4678888888776554332 2467899999999999999999999999998766 6788999999999999999
Q ss_pred HHHHHHHHCCCccCCcceeeeccccc
Q 012034 82 AAKAVEALNGKKFDDREWYVGKAQKK 107 (472)
Q Consensus 82 A~~Av~~lng~~i~g~~l~V~~a~~~ 107 (472)
|.+|++.|||..|.|+.|.|.++..+
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999765
No 265
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=3.3e-15 Score=132.81 Aligned_cols=97 Identities=26% Similarity=0.439 Sum_probs=82.7
Q ss_pred cccCeeEEEcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-CCCceeEEEEEeCCHH
Q 012034 2 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENAD 80 (472)
Q Consensus 2 ~~~~k~v~v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~g~skG~aFV~F~~~e 80 (472)
.++|+.+.|........ ....++|||+|||.++|+++|+++|++||.|.++.+..+. +|+++|||||+|.+.+
T Consensus 68 ~~~g~~l~v~~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 68 RLQTKTIKVSYARPSSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp EETTEECEEEECCCCCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ccCCceEEEEecCCCcc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 35667777755443322 2356889999999999999999999999999999999985 8999999999999999
Q ss_pred HHHHHHHHHCCCccCCcc--eeeecc
Q 012034 81 DAAKAVEALNGKKFDDRE--WYVGKA 104 (472)
Q Consensus 81 ~A~~Av~~lng~~i~g~~--l~V~~a 104 (472)
+|.+|++.|||..+.|+. |.|.||
T Consensus 142 ~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 142 EAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999975 777765
No 266
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6e-16 Score=126.02 Aligned_cols=81 Identities=17% Similarity=0.354 Sum_probs=74.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||.++++++|+++|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 4568999999999999999999999999988777665 478899999999999999999999999999999999999986
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 267
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=123.86 Aligned_cols=77 Identities=31% Similarity=0.476 Sum_probs=71.0
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcC--CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~f--G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~ 102 (472)
....++|||+|||+++|+++|+++|++| |.|.++.+. +|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3568899999999999999999999999 999988764 6799999999999999999999999999999999
Q ss_pred ccccch
Q 012034 103 KAQKKS 108 (472)
Q Consensus 103 ~a~~~~ 108 (472)
++..+.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 997654
No 268
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=1.1e-15 Score=127.43 Aligned_cols=75 Identities=27% Similarity=0.479 Sum_probs=70.1
Q ss_pred CCcceEEeCCCCCC-CCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||++ +|+++|+++|++||.|.+|.+ ++|||||+|++.++|.+|++.||+..|.|+.|.|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999 999999999999999999998 5789999999999999999999999999999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 269
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=4.7e-16 Score=129.07 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=78.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCc---eEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~---I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
...++|||+||++++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999998 899999999889999999999999999999998 99999999999999
Q ss_pred EcccHHHH
Q 012034 206 VAQRKEER 213 (472)
Q Consensus 206 ~a~~k~~~ 213 (472)
++..++..
T Consensus 88 ~a~~~~~~ 95 (107)
T 2lmi_A 88 EINNEDVD 95 (107)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 99877644
No 270
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.8e-16 Score=126.42 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=75.1
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEE-EEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~-v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+|||+++|+++|+++|+.||.|.+ |.|+.+.+|+++|||||+|.+.++|.+|++. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34578999999999999999999999999998 8898888899999999999999999999987 999999999999988
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 271
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.4e-15 Score=126.85 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=71.6
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccC-ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G-~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+||++++++++|+++|+.|| .|..+.|..+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 356899999999999999999999999 9999998643 479999999999999999999999999999999999987
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
...
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 272
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=9.4e-16 Score=122.85 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=63.5
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc--cCCcceeee
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK--FDDREWYVG 102 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~--i~g~~l~V~ 102 (472)
....++|||+|||+++|+++|+++|++||.|.+|.|+.+ +||||||+|++.++|.+ +++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 467899999999999999999999999999999999875 79999999999999983 55655 458999999
Q ss_pred ccccchh
Q 012034 103 KAQKKSE 109 (472)
Q Consensus 103 ~a~~~~~ 109 (472)
++..+..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9876543
No 273
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=8.9e-16 Score=126.91 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=73.9
Q ss_pred ccceeeeecCCCCc------cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe-eE
Q 012034 130 QGLNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PL 202 (472)
Q Consensus 130 ~~~~l~V~nL~~~~------t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk-~l 202 (472)
.+++|||+|||+.+ |+++|+++|+.||.|.+|.|. ..+|.++|||||+|.+.++|.+|+..|||..+.|+ .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 35689999999999 789999999999999999998 45789999999999999999999999999999998 99
Q ss_pred EEEEcccH
Q 012034 203 YVAVAQRK 210 (472)
Q Consensus 203 ~V~~a~~k 210 (472)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998653
No 274
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-16 Score=122.23 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=67.3
Q ss_pred ceeeeecCCCCc------cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe-eEEE
Q 012034 132 LNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYV 204 (472)
Q Consensus 132 ~~l~V~nL~~~~------t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk-~l~V 204 (472)
++|||+|||..+ ++++|+++|++||.|.++.+. ..+|.++|||||+|.+.++|.+|++.|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 779999999999999999988 45789999999999999999999999999999999 8876
No 275
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=135.03 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=76.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEE--EEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCc----EecCee
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKP 201 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~--v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~----~i~gk~ 201 (472)
...++|||+||++++|+++|+++|+.||.|.. |+|++|+ +|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34568999999999999999999999999977 9999997 899999999999999 999999999999 999999
Q ss_pred EEEEEcccH
Q 012034 202 LYVAVAQRK 210 (472)
Q Consensus 202 l~V~~a~~k 210 (472)
|.|.++..+
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 276
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=119.81 Aligned_cols=75 Identities=35% Similarity=0.578 Sum_probs=71.3
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
++|||+|||.++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|++.++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999885 68999999999999999999999999 9999999999986
No 277
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=125.56 Aligned_cols=81 Identities=33% Similarity=0.557 Sum_probs=73.7
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++|+++|+++|+.||.|.+|+|+++. +|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 45689999999999999999999999999999999986 5899999999999999999999886 499999999999987
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 103 ~~~ 105 (109)
T 2rs2_A 103 PRR 105 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 278
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=7.5e-16 Score=124.64 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=72.6
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||+++++++|+++|+.||.|.++.++.+ .++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3468999999999999999999999999998887765 477899999999999999999999999999999999999875
Q ss_pred c
Q 012034 209 R 209 (472)
Q Consensus 209 ~ 209 (472)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 279
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=122.47 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=68.5
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||+++|+++|+++|++||.|.+| +....+|+ ||||+|.+.++|.+|++ ||+..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 457899999999999999999999999999987 33334554 99999999999999999 99999999999999886
Q ss_pred cc
Q 012034 106 KK 107 (472)
Q Consensus 106 ~~ 107 (472)
.+
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 280
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=123.56 Aligned_cols=78 Identities=29% Similarity=0.452 Sum_probs=72.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++|+++|+++|+.||.| +++.+.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 46789999999999999999999999987 666667889999999999999999999999999999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 91 ~ 91 (101)
T 2fc9_A 91 R 91 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 281
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=126.26 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=76.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||++++++++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++. ++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 355789999999999999999999999999999999984 789999999999999999999998 999999999999988
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..+.
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 7653
No 282
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-16 Score=124.00 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=73.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+|||.++++++|+++|+.||.|.+++++.++ ++.++|||||+|.+.++|.+|++.|||..+.|+.|++.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45689999999999999999999999999999999885 68899999999999999999999999999999998887654
No 283
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=122.79 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=70.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|| ++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 46789999996 89999999999999999999984 568999999999999999999999999999999999997
Q ss_pred cch
Q 012034 106 KKS 108 (472)
Q Consensus 106 ~~~ 108 (472)
.+.
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 284
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.2e-16 Score=126.19 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=73.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+|||+++|+++|+++|+.||. .+|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 34568999999999999999999999995 5999999999999999999999999999999 579999999999999776
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 285
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=4.1e-16 Score=124.93 Aligned_cols=80 Identities=33% Similarity=0.522 Sum_probs=71.9
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
++|||+||+.++++++|+++|+.||.|.++++.++. +|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999886 5899999999999999 99999999999999999999998876
Q ss_pred HH
Q 012034 211 EE 212 (472)
Q Consensus 211 ~~ 212 (472)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 286
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.9e-16 Score=128.91 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=71.5
Q ss_pred ceEEeCCC----CCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCC----HHH----HHHHHH--HHCCCc
Q 012034 29 NNVFVKNL----DESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN----ADD----AAKAVE--ALNGKK 93 (472)
Q Consensus 29 ~~l~V~nL----p~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~----~e~----A~~Av~--~lng~~ 93 (472)
++|||+|| |+++++++|+++|+.||+|.++.++.| .||+++|||||+|.+ .++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999 589999999999996 333 899998 789999
Q ss_pred cCCcceeeeccccchh
Q 012034 94 FDDREWYVGKAQKKSE 109 (472)
Q Consensus 94 i~g~~l~V~~a~~~~~ 109 (472)
|+|+.|.|..-.....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999987654433
No 287
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=3.3e-15 Score=125.38 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=74.0
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.+++|||+|||.++|+++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4568999999999999999999999999999999875 56799999999999999999999999999999999999986
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 288
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=125.27 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=70.0
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCc--EecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~--~i~gk~l~V~~a 207 (472)
.+++|||+||++++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++. .+.|++|+|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4568999999999999999999999999999999874 899999999999999999988764 589999999999
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..+.
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 7653
No 289
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=119.66 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=66.4
Q ss_pred CcceEEeCCCCCCCCHHH----HHHHHhcC-CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 27 KFNNVFVKNLDESTTDED----LKKIFGEY-GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~----L~~~F~~f-G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
..|.|||+|||+++++++ |+++|++| |+|.+| ++ |||||.|.+.++|.+|++.|+|..+.||.|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 455699999999999988 55899999 599998 33 99999999999999999999999999999999
Q ss_pred eccccchh
Q 012034 102 GKAQKKSE 109 (472)
Q Consensus 102 ~~a~~~~~ 109 (472)
.+|..+++
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99987654
No 290
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=128.98 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=77.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCce----EEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I----~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..++|||+|||+++|+++|+++|+.||.| .+|.|+.+.+|+++|||||+|.+.++|.+|++. |+..+.|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45689999999999999999999999875 689999988999999999999999999999986 9999999999999
Q ss_pred EcccHHHHHH
Q 012034 206 VAQRKEERRA 215 (472)
Q Consensus 206 ~a~~k~~~~~ 215 (472)
.+..++....
T Consensus 101 ~a~~~e~~~~ 110 (123)
T 2dha_A 101 RSTAAEVQQV 110 (123)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987765544
No 291
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.5e-15 Score=132.36 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=76.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.|+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45789999999999999999999999999999999886 58899999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 118 ~~ 119 (156)
T 1h2v_Z 118 GF 119 (156)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 292
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=122.47 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEE-EEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v-~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
...++|||+|||+++|+++|+++|++||.|.++ .++.+.. .|.|||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999 5777732 344999999999999999999999999999999999
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 293
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=126.51 Aligned_cols=79 Identities=33% Similarity=0.505 Sum_probs=74.4
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.++|||+||+.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++. ++..|+|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999985 688999999999999999999988 99999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 5
No 294
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.3e-15 Score=123.40 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=71.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecC-----eeEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-----KPLYV 204 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g-----k~l~V 204 (472)
..++|||+||++++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+||+.||+..|.| +.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4578999999999999999999999999999999876 899999999999999999999999999 99999
Q ss_pred EEcccH
Q 012034 205 AVAQRK 210 (472)
Q Consensus 205 ~~a~~k 210 (472)
.++..+
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999874
No 295
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.5e-15 Score=123.41 Aligned_cols=82 Identities=33% Similarity=0.522 Sum_probs=75.5
Q ss_pred ccceeeeecCCCCccHHHHH----HHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~----~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
.+++|||+||+.++++++|+ ++|+.||.|.+|.+.+ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45789999999999999999 9999999999999874 46789999999999999999999999999999999999
Q ss_pred EcccHHHH
Q 012034 206 VAQRKEER 213 (472)
Q Consensus 206 ~a~~k~~~ 213 (472)
++..+...
T Consensus 85 ~a~~~~~~ 92 (97)
T 1nu4_A 85 YAKTDSDI 92 (97)
T ss_dssp ECSSCCTH
T ss_pred EccCCCcc
Confidence 99876544
No 296
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=121.42 Aligned_cols=81 Identities=28% Similarity=0.409 Sum_probs=74.4
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||++++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 345789999999999999999999999999999999985 68999999999999999999998 578999999999998
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8763
No 297
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.5e-15 Score=127.69 Aligned_cols=70 Identities=34% Similarity=0.375 Sum_probs=63.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
...++|||+|||+++|+++|+++|++||+|.+|.|+.| |||||+|++.++|.+||+.||++.|.|+.|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 45688999999999999999999999999999999876 89999999999999999999999999998433
No 298
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=124.97 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=74.4
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCc-eEEEEEe-eCC-CCCcccEEEEEcCCHHHHHHHHHHhC--CcEecCeeEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVM-RDP-SGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYV 204 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~-I~~v~i~-~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~--g~~i~gk~l~V 204 (472)
..++|||+||+.++|+++|+++|+.||. |.++.++ .+. +|.++|||||+|.+.++|.+|++.|+ +..+.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4568999999999999999999999998 9999998 554 57899999999999999999999996 58999999999
Q ss_pred EEcccHH
Q 012034 205 AVAQRKE 211 (472)
Q Consensus 205 ~~a~~k~ 211 (472)
.|+..+.
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9997653
No 299
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-15 Score=123.76 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=71.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
.+++|||+||+.++++++|+++|+.||.|.++++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|.|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 457899999999999999999999999999999984 589999999999999999999999999999999999875
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 300
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=117.37 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=70.3
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHh-CCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l-~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++++++|+++|+.||.|.++++.++ +|||||+|.+.++|.+|++.| ++..++|++|.|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34578999999999999999999999999999999874 899999999999999999999 999999999999997
Q ss_pred c
Q 012034 208 Q 208 (472)
Q Consensus 208 ~ 208 (472)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 301
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=128.55 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=75.8
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEE-EEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v-~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+|||+++|+++|+++|+.||.|.++ .+..+.+|.++|||||+|.+.++|.+||+ +|+..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45789999999999999999999999999884 45555689999999999999999999998 99999999999999998
Q ss_pred cHHHHH
Q 012034 209 RKEERR 214 (472)
Q Consensus 209 ~k~~~~ 214 (472)
.++...
T Consensus 103 ~~~~~~ 108 (124)
T 1wel_A 103 KKGMLE 108 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 302
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=121.00 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=71.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec--CeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~--gk~l~V~~a 207 (472)
..++|||+||+.++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.||+..+. |+.|.|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3468999999999999999999999999999999865 789999999999999999999999999 999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 91 ~~~ 93 (97)
T 1why_A 91 KSG 93 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 303
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=127.43 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=69.8
Q ss_pred ccceeeeecCCCC-ccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC--cEecCeeEEEEE
Q 012034 130 QGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVAV 206 (472)
Q Consensus 130 ~~~~l~V~nL~~~-~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g--~~i~gk~l~V~~ 206 (472)
.+++|||+||+++ +++++|+++|+.||.|.+|.|++ ++|||||+|.+.++|.+|++.|++ ..|.|++|+|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4678999999998 99999999999999999999975 489999999999999999998864 569999999999
Q ss_pred cccHH
Q 012034 207 AQRKE 211 (472)
Q Consensus 207 a~~k~ 211 (472)
++.+.
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 97653
No 304
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=128.51 Aligned_cols=78 Identities=29% Similarity=0.488 Sum_probs=73.3
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..++|||+|||.++++++|+++|+.||.|.+++|++++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999884 7889999999999999999999999999999999999875
No 305
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=7.7e-15 Score=121.22 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=73.1
Q ss_pred cCCcceEEeCCCCC-----CCCHHHHHHHHhcCCCeeEEEEEECC--CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 25 KTKFNNVFVKNLDE-----STTDEDLKKIFGEYGTITSAVVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 25 ~~~~~~l~V~nLp~-----~~tee~L~~~F~~fG~I~~v~i~~d~--~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
....++|+|+|+-. +-++++|+++|++||.|.+|.|.++. +++++|||||+|++.++|.+|++.|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999962 33789999999999999999999984 368999999999999999999999999999999
Q ss_pred ceeeecccc
Q 012034 98 EWYVGKAQK 106 (472)
Q Consensus 98 ~l~V~~a~~ 106 (472)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 306
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-15 Score=123.20 Aligned_cols=77 Identities=27% Similarity=0.472 Sum_probs=72.7
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+..+++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|+..|||..+.|+.|.|.|+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 45679999999999999999999999999999999986 8999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 307
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=3.8e-15 Score=123.83 Aligned_cols=78 Identities=26% Similarity=0.574 Sum_probs=72.0
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
....++|||+||+.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3456799999999999999999999999999999987 789999999999999999999999999999999999
Q ss_pred ccHHH
Q 012034 208 QRKEE 212 (472)
Q Consensus 208 ~~k~~ 212 (472)
..+..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87643
No 308
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=123.67 Aligned_cols=76 Identities=26% Similarity=0.543 Sum_probs=72.0
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
++|||+||+.++|+++|+++|+.||.|.+|.+..+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999987 79999999999999999999999999999999999988753
No 309
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=118.34 Aligned_cols=74 Identities=22% Similarity=0.478 Sum_probs=69.8
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.||+..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 45789999999999999999999999999999997 57999999999999999999999999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 80 ~ 80 (90)
T 2dnq_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 5
No 310
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=124.59 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=70.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++++++|+++|+.||.|.+|.|.. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 356899999999999999999999999999999875 488999999999999999999999999999999999875
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 311
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=8.8e-15 Score=119.10 Aligned_cols=74 Identities=26% Similarity=0.453 Sum_probs=69.5
Q ss_pred ccceeeeecCCC-CccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~-~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+||+. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.+||..++|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 467899999998 99999999999999999999983 7899999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 312
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=5.7e-15 Score=125.97 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeE-EEEEeCCHHHHHHHHHHHCCCccCC--cceeee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF-GFVNFENADDAAKAVEALNGKKFDD--REWYVG 102 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~-aFV~F~~~e~A~~Av~~lng~~i~g--~~l~V~ 102 (472)
.+--.|||+||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|++.++|.+|++.|||..|.| +.|+|.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 45667899999999999999999999999999988864 3677 9999999999999999999999988 899999
Q ss_pred ccccc
Q 012034 103 KAQKK 107 (472)
Q Consensus 103 ~a~~~ 107 (472)
+++.+
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99765
No 313
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-15 Score=121.88 Aligned_cols=77 Identities=29% Similarity=0.439 Sum_probs=71.9
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34568999999999999999999999999999999865 8999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 88 ~~ 89 (99)
T 2cpj_A 88 HS 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 314
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=2.6e-15 Score=119.30 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=67.3
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcC----C-------CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 94 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~f----G-------~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i 94 (472)
...++|||+|||.++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .||+..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 457899999999999999999999999 8 9999988765 899999999999999999 9999999
Q ss_pred CCcceeeec
Q 012034 95 DDREWYVGK 103 (472)
Q Consensus 95 ~g~~l~V~~ 103 (472)
.|+.|.|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 315
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=5.4e-15 Score=135.93 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=74.7
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 106 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~ 106 (472)
..++|||+|||.++|+++|+++|++||.|.+|.+.++.+|+++|||||+|++.++|.+|++.+ +..+.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 468999999999999999999999999999999999988999999999999999999999765 5689999999999876
Q ss_pred chh
Q 012034 107 KSE 109 (472)
Q Consensus 107 ~~~ 109 (472)
..+
T Consensus 187 y~~ 189 (193)
T 2voo_A 187 YFA 189 (193)
T ss_dssp C--
T ss_pred HHH
Confidence 543
No 316
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.3e-15 Score=123.88 Aligned_cols=77 Identities=22% Similarity=0.431 Sum_probs=69.4
Q ss_pred cccceeee--ecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe-----cCee
Q 012034 129 FQGLNLYI--KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-----VSKP 201 (472)
Q Consensus 129 ~~~~~l~V--~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i-----~gk~ 201 (472)
....+||| +||++++|+++|+++|++||.|++|.|..+ ||||||+|.+.++|.+|++.|||+.+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 34568999 669999999999999999999999988753 89999999999999999999999998 6899
Q ss_pred EEEEEcccH
Q 012034 202 LYVAVAQRK 210 (472)
Q Consensus 202 l~V~~a~~k 210 (472)
|+|.+++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998653
No 317
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=123.65 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=68.6
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeE-EEEEeCCHHHHHHHHHHHCCCccCC--cceeeec
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF-GFVNFENADDAAKAVEALNGKKFDD--REWYVGK 103 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~-aFV~F~~~e~A~~Av~~lng~~i~g--~~l~V~~ 103 (472)
+--.|||+||++.+|+++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++.|||..|.| +.|.|.+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3445789999999999999999999999999999763 286 9999999999999999999999987 6899999
Q ss_pred cccch
Q 012034 104 AQKKS 108 (472)
Q Consensus 104 a~~~~ 108 (472)
+..+.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97654
No 318
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=116.98 Aligned_cols=75 Identities=20% Similarity=0.458 Sum_probs=70.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+.++++++|+++|+.||.|.+|.+.++ ||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 35678999999999999999999999999999999743 99999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 319
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=6e-15 Score=125.17 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=71.6
Q ss_pred cCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeecc
Q 012034 25 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 104 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a 104 (472)
....++|||+|| ++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 356899999996 79999999999999999999985 56899999999999999999999999999999999999
Q ss_pred ccchh
Q 012034 105 QKKSE 109 (472)
Q Consensus 105 ~~~~~ 109 (472)
..+..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 320
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=3e-15 Score=122.81 Aligned_cols=81 Identities=22% Similarity=0.496 Sum_probs=75.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4568999999999999999999999999999999999889999999999999999999998 99999999999999887
Q ss_pred HHH
Q 012034 210 KEE 212 (472)
Q Consensus 210 k~~ 212 (472)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 643
No 321
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.9e-15 Score=116.60 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=69.2
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
+|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++. ++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998885 588999999999999999999974 889999999999875
No 322
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=5.5e-15 Score=152.41 Aligned_cols=82 Identities=27% Similarity=0.525 Sum_probs=77.4
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
..++|||+|||.++|+++|+++|++||.|.+|.|+.+ .+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4579999999999999999999999999999999999 589999999999999999999999999999999999999997
Q ss_pred cch
Q 012034 106 KKS 108 (472)
Q Consensus 106 ~~~ 108 (472)
.+.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 543
No 323
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.8e-15 Score=120.04 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=70.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||++++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 457899999999999999999999999997 666653 6799999999999999999999999999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 324
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=3.8e-15 Score=126.98 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=73.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceE--EEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTIT--SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~--~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..++|||+|||+++|+++|+++|+.| .|. +|+|+.+++|+++|||||+|.+.++|.+|++. ++..|+|+.|.|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 45689999999999999999999999 566 89999998899999999999999999999974 779999999999998
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..++
T Consensus 119 ~~~e 122 (126)
T 2hgm_A 119 SQEE 122 (126)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7665
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=6.8e-15 Score=133.33 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=77.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..+++|||+||+..+++++|+++|+.||.|++|.|..+.++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 326
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=116.22 Aligned_cols=75 Identities=24% Similarity=0.506 Sum_probs=69.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+||+.++|+++|+++|+.||.|.++++.++ ||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 34578999999999999999999999999999999843 99999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 327
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=124.91 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=67.1
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC-C---CCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-D---GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~---g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
...++|||+|||+++|+++|+++|++||.|. +.++.+. + |+++|||||+|++.++|.+|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 5678999999999999999999999999999 7777663 4 7999999999999999999999984 377888877
Q ss_pred eccc
Q 012034 102 GKAQ 105 (472)
Q Consensus 102 ~~a~ 105 (472)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6553
No 328
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=119.83 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=70.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45689999999999999999999999988766 34678999999999999999999999999999999999999876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.9e-15 Score=131.24 Aligned_cols=123 Identities=14% Similarity=0.161 Sum_probs=74.3
Q ss_pred eEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHH
Q 012034 70 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 149 (472)
Q Consensus 70 G~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~ 149 (472)
|++|..|...+.+..+...+... ..+...--..... .........++|||+|||+++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~----------------~~~~~~~~~~~lfV~nLp~~~te~dL~ 64 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS----------------EFTVQSTTGHCVHMRGLPYKATENDIY 64 (139)
T ss_dssp ------------------------------------------------------------CCCCEECCSCCTTCCHHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc----------------ccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67888888877777666654322 2222110000000 001122345689999999999999999
Q ss_pred HHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 150 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 150 ~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
++|+.|| |++|+|+.+++|+++|||||+|.+.++|.+|| .+|+..|.|+.|.|.++..++
T Consensus 65 ~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 65 NFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9999999 77999999988999999999999999999999 899999999999999877653
No 330
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=2.5e-14 Score=114.52 Aligned_cols=76 Identities=16% Similarity=0.391 Sum_probs=63.4
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe--cCeeEEEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 206 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i--~gk~l~V~~ 206 (472)
...++|||+||++++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++..+ .|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 35679999999999999999999999999999999885 79999999999999883 566554 599999999
Q ss_pred cccHHH
Q 012034 207 AQRKEE 212 (472)
Q Consensus 207 a~~k~~ 212 (472)
+..+..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987754
No 331
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=2e-14 Score=118.15 Aligned_cols=75 Identities=28% Similarity=0.544 Sum_probs=69.9
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+||+.++|+++|+++|+.||.|.+|+++ ++||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 45689999999999999999999999999999987 45999999999999999999999999999999999876
Q ss_pred HH
Q 012034 210 KE 211 (472)
Q Consensus 210 k~ 211 (472)
+.
T Consensus 83 ~~ 84 (103)
T 2dgu_A 83 PD 84 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 332
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.6e-15 Score=122.79 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=71.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCce----EEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I----~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..++|||+||+.++|+++|+++|+.||.| ..+++. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45789999999999999999999999998 445544 67899999999999999999999999999999999999
Q ss_pred EcccHH
Q 012034 206 VAQRKE 211 (472)
Q Consensus 206 ~a~~k~ 211 (472)
++..+.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 988753
No 333
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=117.81 Aligned_cols=80 Identities=30% Similarity=0.432 Sum_probs=71.7
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
...++|||+||+.++|+++|+++|+.|+ +++++.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4567899999999999999999999874 56676664 7889999999999999999999999999999999999998
Q ss_pred ccHH
Q 012034 208 QRKE 211 (472)
Q Consensus 208 ~~k~ 211 (472)
..+.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 334
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.8e-16 Score=130.32 Aligned_cols=84 Identities=25% Similarity=0.510 Sum_probs=77.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEE--------EEEeeCC-CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~--------v~i~~~~-~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk 200 (472)
..++|||+||+.++++++|+++|+.||.|.+ |+|+.++ ++.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3468999999999999999999999999999 8888884 688999999999999999999999999999999
Q ss_pred eEEEEEcccHHHH
Q 012034 201 PLYVAVAQRKEER 213 (472)
Q Consensus 201 ~l~V~~a~~k~~~ 213 (472)
.|.|.++..+..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999877543
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=1.5e-14 Score=128.05 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=70.3
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecC--eeEEEEEccc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQR 209 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g--k~l~V~~a~~ 209 (472)
.+|||+||++.+|+++|+++|++||.|++|+|+.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.|++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 46999999999999999999999999999999765 258899999999999999999999999965 9999999987
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 124 ~ 124 (164)
T 1sjr_A 124 T 124 (164)
T ss_dssp S
T ss_pred C
Confidence 6
No 336
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.6e-14 Score=115.26 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=69.0
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
.++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|++.|||..++|++|+|.++..+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4689999999999999999999999 99999885 57999999999999999999999999999999999998653
No 337
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=121.54 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=71.6
Q ss_pred ceeeeecC----CCCccHHHHHHHHhccCceEEEEEeeCC-CCCcccEEEEEcCC----HHH----HHHHHH--HhCCcE
Q 012034 132 LNLYIKNL----GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST----PEE----ASRALA--EMNGKM 196 (472)
Q Consensus 132 ~~l~V~nL----~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~g~s~g~afV~f~s----~~~----A~~Ai~--~l~g~~ 196 (472)
++|||+|| ++.+++++|+++|+.||.|.+|.++.|+ +|.|+|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999999997 78999999999996 333 899998 789999
Q ss_pred ecCeeEEEEEcccHH
Q 012034 197 IVSKPLYVAVAQRKE 211 (472)
Q Consensus 197 i~gk~l~V~~a~~k~ 211 (472)
|+|++|+|.+.....
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999986643
No 338
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-14 Score=118.06 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=70.0
Q ss_pred ccceeeeecCCC-CccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~-~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||++ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 467899999998 99999999999999999999984 7899999999999999999999999999999999987
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 82 ~~~ 84 (96)
T 2kvi_A 82 SNA 84 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 339
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=2.9e-14 Score=121.59 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=69.4
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccE-EEEEcCCHHHHHHHHHHhCCcEecC--eeEEEEEcc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 208 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~-afV~f~s~~~A~~Ai~~l~g~~i~g--k~l~V~~a~ 208 (472)
..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 36899999999999999999999999999998875 3678 9999999999999999999999988 899999997
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-15 Score=119.61 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=66.0
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
...++|||+|||+++|+++|+++|++||.|.+|.++.+ ++|||||+|++.++|++|+.. ...+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999999865 789999999999999865321 334589999999987
Q ss_pred cch
Q 012034 106 KKS 108 (472)
Q Consensus 106 ~~~ 108 (472)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=117.53 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=68.1
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCc-eEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC-cEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~-I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g-~~i~gk~l~V~~a 207 (472)
..++|||+||+.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4568999999999999999999999999 6666653 489999999999999999999999 9999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 765
No 342
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-15 Score=124.25 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=72.0
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeC-CCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~-~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+.++|+++|+++|+.||.|.+ .++.+ .+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4568999999999999999999999999888 55444 468899999999999999999998 99999999999999987
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=6.9e-14 Score=115.46 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=72.4
Q ss_pred ccceeeeecCCC-----CccHHHHHHHHhccCceEEEEEeeCC--CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeE
Q 012034 130 QGLNLYIKNLGD-----SIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 202 (472)
Q Consensus 130 ~~~~l~V~nL~~-----~~t~e~L~~~F~~~G~I~~v~i~~~~--~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l 202 (472)
.+.+|+|+|+-. +-++++|+++|++||.|++|.|++++ ++.++|||||+|.+.++|.+|++.|||+.++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456899999963 23689999999999999999999875 36899999999999999999999999999999999
Q ss_pred EEEEcccHH
Q 012034 203 YVAVAQRKE 211 (472)
Q Consensus 203 ~V~~a~~k~ 211 (472)
+|.++....
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999997643
No 344
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=1.8e-14 Score=119.88 Aligned_cols=74 Identities=26% Similarity=0.550 Sum_probs=69.2
Q ss_pred ccceeeeecCCCC-ccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~-~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||+++ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|.+|++.||+..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3468999999999 999999999999999999998 48899999999999999999999999999999999986
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=126.98 Aligned_cols=83 Identities=27% Similarity=0.474 Sum_probs=72.4
Q ss_pred ccccceeeeecCCCCccHHHHHHHHhccCceEEE------EEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee
Q 012034 128 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC------KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201 (472)
Q Consensus 128 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v------~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~ 201 (472)
...+++|||+||++++|+++|+++|+.||.|.++ .+....+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456789999999999999999999999998774 1211236889999999999999999999999999999999
Q ss_pred EEEEEcccH
Q 012034 202 LYVAVAQRK 210 (472)
Q Consensus 202 l~V~~a~~k 210 (472)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 346
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=114.18 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.0
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
...++|||+|| ++|+++|+++|+.||.|.+|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35678999996 89999999999999999999985 468999999999999999999999999999999999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=2e-14 Score=135.53 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=71.7
Q ss_pred cCCcceEEeCCCCCCC---------CHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCcc-
Q 012034 25 KTKFNNVFVKNLDEST---------TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF- 94 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~---------tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i- 94 (472)
....++|||+||+.++ +|++|+++|++||+|.+|.|+. +||||||+|.+.++|+.|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4678999999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred -----------CCcceeeeccccchhH
Q 012034 95 -----------DDREWYVGKAQKKSER 110 (472)
Q Consensus 95 -----------~g~~l~V~~a~~~~~~ 110 (472)
.|+.|.|.||..+...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=8.1e-14 Score=128.03 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHH--CCCccCCcceeeeccccchhH--HHHHHHHHHhhhhhhccccccceeeeecCCCCccHHHHHHHHh
Q 012034 78 NADDAAKAVEAL--NGKKFDDREWYVGKAQKKSER--EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 153 (472)
Q Consensus 78 ~~e~A~~Av~~l--ng~~i~g~~l~V~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~ 153 (472)
+.+.+..|++.. ....+.+....|.+....... ..+.. .....++|||+|||.++|+++|+++|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~-----------~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYK-----------NDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHH-----------HHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhh-----------hccccCEEEecCCCCcCCHHHHHHHHh
Confidence 567777788765 344566666777665321110 00000 111235899999999999999999999
Q ss_pred ccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHHH
Q 012034 154 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 212 (472)
Q Consensus 154 ~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~~ 212 (472)
.||.|.+|+|.++.++.++|||||+|.+.++|.+|+..++ ..++|+.|.|.++..-..
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYFA 189 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC--
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHHH
Confidence 9999999999999889999999999999999999997665 589999999998776433
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=4.3e-14 Score=131.13 Aligned_cols=77 Identities=17% Similarity=0.405 Sum_probs=71.8
Q ss_pred ccceeeeecCC-CCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLG-DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~-~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
.+++|||+||+ +.+|+++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|.+|++.|||..+.|++|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 89999999999999999999999876 48999999999999999999999999999999999986
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 350
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.8e-14 Score=113.72 Aligned_cols=74 Identities=30% Similarity=0.492 Sum_probs=69.0
Q ss_pred ccceeeeecCCCCccHHHHHHHHhcc--CceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 207 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~--G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a 207 (472)
..++|||+||++++|+++|+++|+.| |.|.++++. +|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45789999999999999999999999 999999875 569999999999999999999999999999999998
Q ss_pred ccH
Q 012034 208 QRK 210 (472)
Q Consensus 208 ~~k 210 (472)
..+
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 351
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=3.6e-14 Score=119.23 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=66.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee-----EEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP-----LYV 204 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~-----l~V 204 (472)
..++|||+||++++|+++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+||+.|||..|+|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3568999999999999999999999999999999875 89999999999999999999999999988 666
Q ss_pred EEccc
Q 012034 205 AVAQR 209 (472)
Q Consensus 205 ~~a~~ 209 (472)
..+..
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66554
No 352
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=114.18 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=70.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEE-EeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~-i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..++|||+||++++++++|+++|+.||.|.+++ |+.++. .|.|||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457899999999999999999999999999994 777642 3349999999999999999999999999999999998
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 353
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=112.49 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=63.6
Q ss_pred ceeeeecCCCCccHHH----HHHHHhcc-CceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 132 LNLYIKNLGDSIDDEK----LKELFSEF-GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~----L~~~F~~~-G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
+.|||+||++.+++++ |+++|++| |.|.+|. + |+|||+|.+.++|.+|++.|+|..+.||+|+|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999987 55899999 5999982 2 9999999999999999999999999999999999
Q ss_pred cccH
Q 012034 207 AQRK 210 (472)
Q Consensus 207 a~~k 210 (472)
++.+
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9765
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=8.5e-14 Score=118.10 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=67.4
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccE-EEEEcCCHHHHHHHHHHhCCcEecC--eeEEEEEcc
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 208 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~-afV~f~s~~~A~~Ai~~l~g~~i~g--k~l~V~~a~ 208 (472)
..|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35789999999999999999999999999999763 386 9999999999999999999999987 589999987
Q ss_pred cH
Q 012034 209 RK 210 (472)
Q Consensus 209 ~k 210 (472)
.+
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 355
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.1e-14 Score=120.05 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=65.3
Q ss_pred eCCCCCCCCHHHHHHHH------------hcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 33 VKNLDESTTDEDLKKIF------------GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 33 V~nLp~~~tee~L~~~F------------~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
+.||++++|+++|++.| ++||.|.+|.|.++.+++++|||||+|++.++|.+|++.|||+.+.|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777788888777666 999999999999998899999999999999999999999999999999999
Q ss_pred eecc
Q 012034 101 VGKA 104 (472)
Q Consensus 101 V~~a 104 (472)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9876
No 356
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1.2e-13 Score=132.89 Aligned_cols=82 Identities=29% Similarity=0.374 Sum_probs=74.6
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC-CccC---Ccceee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG-KKFD---DREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng-~~i~---g~~l~V 101 (472)
...++|||+|||.++|+++|+++|+.||.|.+|.++.|.+|+++|||||+|.+.++|.+|++.||+ ..+. ++.|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999954 4444 899999
Q ss_pred eccccc
Q 012034 102 GKAQKK 107 (472)
Q Consensus 102 ~~a~~~ 107 (472)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 988754
No 357
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=8e-13 Score=128.28 Aligned_cols=81 Identities=33% Similarity=0.520 Sum_probs=74.7
Q ss_pred cccceeeeecCCCCccHHHHH----HHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 129 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~----~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
...++|||+||+.++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 346789999999999999977 8999999999999987 5789999999999999999999999999999999999
Q ss_pred EEcccHH
Q 012034 205 AVAQRKE 211 (472)
Q Consensus 205 ~~a~~k~ 211 (472)
.++..+.
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997654
No 358
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.2e-14 Score=112.81 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=65.6
Q ss_pred cceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
..+|||+||++++|+++|+++|+.||.|.+| +....++. ||||+|.+.++|.+|++ |||..|+|+.|.|.++..+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 3589999999999999999999999999988 33323343 99999999999999999 9999999999999876544
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.5e-13 Score=109.00 Aligned_cols=69 Identities=22% Similarity=0.491 Sum_probs=65.4
Q ss_pred cceeeeecCCCCccHHHHHHHHhcc----C-------ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEF----G-------TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~----G-------~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
.++|||+||+.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 4689999999999999999999999 8 8999999865 899999999999999999 999999999
Q ss_pred eeEEEE
Q 012034 200 KPLYVA 205 (472)
Q Consensus 200 k~l~V~ 205 (472)
+.|.|+
T Consensus 80 ~~l~V~ 85 (87)
T 2hzc_A 80 QSLKIR 85 (87)
T ss_dssp EECEEE
T ss_pred eEEEEe
Confidence 999987
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=114.54 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=70.1
Q ss_pred cCCcceEEeCCCCCCCC-----------HHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCc
Q 012034 25 KTKFNNVFVKNLDESTT-----------DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 93 (472)
Q Consensus 25 ~~~~~~l~V~nLp~~~t-----------ee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~ 93 (472)
....++|+|+||-...+ +++|+++|++||.|.+|.| .|. .++|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 46788999999944332 5899999999999999965 554 379999999999999999999999999
Q ss_pred cCCcceeeeccccch
Q 012034 94 FDDREWYVGKAQKKS 108 (472)
Q Consensus 94 i~g~~l~V~~a~~~~ 108 (472)
|.|+.|.|.++..+.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987653
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=1.5e-13 Score=116.43 Aligned_cols=76 Identities=29% Similarity=0.461 Sum_probs=69.8
Q ss_pred cccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 129 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
..+++|||+|+ ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45678999996 69999999999999999999986 468999999999999999999999999999999999998
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 763
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1.7e-13 Score=115.37 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=71.2
Q ss_pred CCcceEEeCCCC--CCC---CHHHHHHHHhcCCCeeEEEEEECC-----CCCceeEEEEEeCCHHHHHHHHHHHCCCccC
Q 012034 26 TKFNNVFVKNLD--EST---TDEDLKKIFGEYGTITSAVVMRDG-----DGKSKCFGFVNFENADDAAKAVEALNGKKFD 95 (472)
Q Consensus 26 ~~~~~l~V~nLp--~~~---tee~L~~~F~~fG~I~~v~i~~d~-----~g~skG~aFV~F~~~e~A~~Av~~lng~~i~ 95 (472)
...++|+|+|+- .++ .+++|++.|++||.|.+|+|.++. +++++||+||+|++.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 468899999983 233 368999999999999999999984 3578899999999999999999999999999
Q ss_pred Ccceeeecccc
Q 012034 96 DREWYVGKAQK 106 (472)
Q Consensus 96 g~~l~V~~a~~ 106 (472)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998754
No 363
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=2.2e-13 Score=128.41 Aligned_cols=77 Identities=16% Similarity=0.341 Sum_probs=71.2
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC-Ccceeeecc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKA 104 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~-g~~l~V~~a 104 (472)
..++|||+|||.++|+++|+++|++|| .|.+|.++.+ ++|||||+|.+.++|.+|++.|||..+. |+.|.|.++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 368999999999999999999999999 9999999764 3789999999999999999999999999 999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 753
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=125.80 Aligned_cols=77 Identities=16% Similarity=0.341 Sum_probs=71.3
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC-Ccceeeecc
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKA 104 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~-g~~l~V~~a 104 (472)
..++|||+|||.++|+++|+++|++|| .|.++.++.+ ++|||||+|.+.++|.+|++.|||..+. |+.|.|.++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 378899999999999999999999999 9999998764 3789999999999999999999999999 999999998
Q ss_pred ccc
Q 012034 105 QKK 107 (472)
Q Consensus 105 ~~~ 107 (472)
..+
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=1.8e-13 Score=129.02 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=70.6
Q ss_pred cccceeeeecCCCCc---------cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe--
Q 012034 129 FQGLNLYIKNLGDSI---------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-- 197 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~---------t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i-- 197 (472)
...++|||+||+..+ ++++|+++|++||.|++|+|+.+ +|||||+|.+.++|..|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356799999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ----------cCeeEEEEEcccHHHHHH
Q 012034 198 ----------VSKPLYVAVAQRKEERRA 215 (472)
Q Consensus 198 ----------~gk~l~V~~a~~k~~~~~ 215 (472)
.|+.|.|.||..+.....
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-------
T ss_pred cccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999988765443
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=1.4e-13 Score=113.65 Aligned_cols=81 Identities=25% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCcceEEeCCC--CCCCC--------HHHHHHHHhcCCCeeEEEEEECCC---CCceeEEEEEeCCHHHHHHHHHHHCCC
Q 012034 26 TKFNNVFVKNL--DESTT--------DEDLKKIFGEYGTITSAVVMRDGD---GKSKCFGFVNFENADDAAKAVEALNGK 92 (472)
Q Consensus 26 ~~~~~l~V~nL--p~~~t--------ee~L~~~F~~fG~I~~v~i~~d~~---g~skG~aFV~F~~~e~A~~Av~~lng~ 92 (472)
...+.|.++|+ +.++. +++|++.|++||.|.+|.|.++.. ++++|||||+|++.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678899998 44443 369999999999999999998854 468999999999999999999999999
Q ss_pred ccCCcceeeecccc
Q 012034 93 KFDDREWYVGKAQK 106 (472)
Q Consensus 93 ~i~g~~l~V~~a~~ 106 (472)
.+.|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 367
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=114.49 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=65.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC-C---CCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S---GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~-~---g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..++|||+||++++|+++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|++.++ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 356899999999999999999999999999 7777765 3 7899999999999999999999984 3677777776
Q ss_pred Ecc
Q 012034 206 VAQ 208 (472)
Q Consensus 206 ~a~ 208 (472)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 368
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1e-13 Score=110.50 Aligned_cols=75 Identities=17% Similarity=0.357 Sum_probs=64.2
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEccc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 209 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~ 209 (472)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+.. ...+.|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 3568999999999999999999999999999999875 799999999999999764321 3345899999998876
Q ss_pred H
Q 012034 210 K 210 (472)
Q Consensus 210 k 210 (472)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=1.2e-13 Score=113.87 Aligned_cols=71 Identities=17% Similarity=0.403 Sum_probs=61.8
Q ss_pred ecCCCCccHHHHH-----------HHH-hccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 137 KNLGDSIDDEKLK-----------ELF-SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 137 ~nL~~~~t~e~L~-----------~~F-~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
.+|++.+++++|+ ++| ++||.|++|+|.++..++++|||||+|.+.++|.+|+..|||+.++|+.|+|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4455555555555 455 9999999999999888899999999999999999999999999999999999
Q ss_pred EEc
Q 012034 205 AVA 207 (472)
Q Consensus 205 ~~a 207 (472)
.|+
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=6.4e-13 Score=109.65 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=69.9
Q ss_pred cceeeeecC--CCCcc--------HHHHHHHHhccCceEEEEEeeCCCC---CcccEEEEEcCCHHHHHHHHHHhCCcEe
Q 012034 131 GLNLYIKNL--GDSID--------DEKLKELFSEFGTITSCKVMRDPSG---ISKGSGFVAFSTPEEASRALAEMNGKMI 197 (472)
Q Consensus 131 ~~~l~V~nL--~~~~t--------~e~L~~~F~~~G~I~~v~i~~~~~g---~s~g~afV~f~s~~~A~~Ai~~l~g~~i 197 (472)
+..|.|.|+ +.++. +++|++.|++||.|++|+|+++..+ .++||+||+|.+.++|.+|++.|||+.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 457888888 33333 3799999999999999999988643 6899999999999999999999999999
Q ss_pred cCeeEEEEEcccHH
Q 012034 198 VSKPLYVAVAQRKE 211 (472)
Q Consensus 198 ~gk~l~V~~a~~k~ 211 (472)
+|+.|.|.++....
T Consensus 85 ~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 85 ANRVVVTKYCDPDS 98 (105)
T ss_dssp TTEECEEEEECHHH
T ss_pred CCCEEEEEEeCHHH
Confidence 99999999987654
No 371
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.3e-12 Score=107.53 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=68.1
Q ss_pred cccceeeeecCCCCcc-----------HHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEe
Q 012034 129 FQGLNLYIKNLGDSID-----------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 197 (472)
Q Consensus 129 ~~~~~l~V~nL~~~~t-----------~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i 197 (472)
....+|+|.||-...+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||..+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456899999954332 5899999999999999966 443 4899999999999999999999999999
Q ss_pred cCeeEEEEEcccH
Q 012034 198 VSKPLYVAVAQRK 210 (472)
Q Consensus 198 ~gk~l~V~~a~~k 210 (472)
+|+.|.|.++..+
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998764
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=2.4e-12 Score=108.41 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=70.4
Q ss_pred ccceeeeecCCC--Cc---cHHHHHHHHhccCceEEEEEeeCCC-----CCcccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 130 QGLNLYIKNLGD--SI---DDEKLKELFSEFGTITSCKVMRDPS-----GISKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 130 ~~~~l~V~nL~~--~~---t~e~L~~~F~~~G~I~~v~i~~~~~-----g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
.+.+|+|+|+-. ++ .++||++.|++||.|.+|+|+++.. +.++||+||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456899999842 22 3689999999999999999998753 4678999999999999999999999999999
Q ss_pred eeEEEEEcccH
Q 012034 200 KPLYVAVAQRK 210 (472)
Q Consensus 200 k~l~V~~a~~k 210 (472)
+.|.|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998764
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.3e-12 Score=101.52 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccccch
Q 012034 38 ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 108 (472)
Q Consensus 38 ~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~~~~ 108 (472)
.++|+++|+++|++||+|.+|.|+ ++++|||||+|++.++|.+|++.+ ..+.++.|.|.|+..+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEEEccCCC
Confidence 468999999999999999999998 478999999999999999999974 44689999999987653
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=2.4e-12 Score=127.64 Aligned_cols=76 Identities=17% Similarity=0.368 Sum_probs=66.3
Q ss_pred cCCcceEEeCC--CCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccC---Cc--
Q 012034 25 KTKFNNVFVKN--LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD---DR-- 97 (472)
Q Consensus 25 ~~~~~~l~V~n--Lp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~---g~-- 97 (472)
....++|||+| |+.++||++|+++|++||+|.+|.+.. +||||||+|++.++|++|+++|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 46788999999 579999999999999999999987642 5899999999999999999999999873 44
Q ss_pred ceeeeccc
Q 012034 98 EWYVGKAQ 105 (472)
Q Consensus 98 ~l~V~~a~ 105 (472)
.|+|.+..
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 58888874
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=3.9e-11 Score=100.21 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=66.6
Q ss_pred cceeeeecCCCCc----------cHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCe
Q 012034 131 GLNLYIKNLGDSI----------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 200 (472)
Q Consensus 131 ~~~l~V~nL~~~~----------t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk 200 (472)
+.+|.++|+=..- .++||++.|++||.|++|.|.++. ++||+||+|.+.++|.+|++.|||+.++|+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4567788873321 236899999999999999997763 599999999999999999999999999999
Q ss_pred eEEEEEcccHHH
Q 012034 201 PLYVAVAQRKEE 212 (472)
Q Consensus 201 ~l~V~~a~~k~~ 212 (472)
.|+|.++....-
T Consensus 84 ~i~v~~~~~~~y 95 (114)
T 3s6e_A 84 MITAAYVPLPTY 95 (114)
T ss_dssp ECEEEEECHHHH
T ss_pred EEEEEEEcHHHH
Confidence 999999976543
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.7e-11 Score=121.55 Aligned_cols=75 Identities=25% Similarity=0.490 Sum_probs=65.7
Q ss_pred cccceeeeec--CCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEec---Ce--e
Q 012034 129 FQGLNLYIKN--LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SK--P 201 (472)
Q Consensus 129 ~~~~~l~V~n--L~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~---gk--~ 201 (472)
..+.+|||+| |+..+|+++|+++|++||.|++|.+.. +||||||+|.+.++|.+|++.|||+.+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3456899999 578999999999999999999988764 4899999999999999999999999883 34 6
Q ss_pred EEEEEcc
Q 012034 202 LYVAVAQ 208 (472)
Q Consensus 202 l~V~~a~ 208 (472)
|+|.+++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888874
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=1.3e-11 Score=103.14 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=64.5
Q ss_pred CcceEEeCCCCCCC----------CHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC
Q 012034 27 KFNNVFVKNLDEST----------TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 96 (472)
Q Consensus 27 ~~~~l~V~nLp~~~----------tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g 96 (472)
..+.|.++|+=... .+++|++.|++||.|.+|.|.++. ++|||||+|++.++|.+|++.|||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45678888873211 235889999999999999886552 58999999999999999999999999999
Q ss_pred cceeeecccc
Q 012034 97 REWYVGKAQK 106 (472)
Q Consensus 97 ~~l~V~~a~~ 106 (472)
+.|.|.++..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999854
No 378
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.9e-11 Score=97.79 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=57.3
Q ss_pred CCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccH
Q 012034 141 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 210 (472)
Q Consensus 141 ~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k 210 (472)
..+++++|+++|++||.|.+|.|+ +.++|||||+|.+.++|.+|++.+++ +.|++|.|.|+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 36899999999999999999998554 67999999998755
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=9.7e-10 Score=92.08 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=74.1
Q ss_pred ccccccceeeeecCCCC-ccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCC-HHHHHHHHHHhC--CcEecCee
Q 012034 126 VDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST-PEEASRALAEMN--GKMIVSKP 201 (472)
Q Consensus 126 ~~~~~~~~l~V~nL~~~-~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s-~~~A~~Ai~~l~--g~~i~gk~ 201 (472)
.....++.|||+||++. ++.++|+++|+.||.|.+|.+.++. -.|||.|.+ .++|..|+..++ +..|.|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 44567889999999999 9999999999999999999998873 269999999 899999999995 67899999
Q ss_pred EEEEEcccHHHHH
Q 012034 202 LYVAVAQRKEERR 214 (472)
Q Consensus 202 l~V~~a~~k~~~~ 214 (472)
+.+++....++..
T Consensus 88 ~~~evL~GeeE~~ 100 (121)
T 1owx_A 88 VTWEVLEGEVEKE 100 (121)
T ss_dssp EEEEECCHHHHHH
T ss_pred EEEEECCCHHHHH
Confidence 9999888776654
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2e-09 Score=90.20 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCcceEEeCCCCCC-CCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCC-HHHHHHHHHHHC--CCccCCcceee
Q 012034 26 TKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN-ADDAAKAVEALN--GKKFDDREWYV 101 (472)
Q Consensus 26 ~~~~~l~V~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~-~e~A~~Av~~ln--g~~i~g~~l~V 101 (472)
.+.+.|||+||+.+ +|+++|+++|++||+|..|.+..+.+ .|||.|.+ .++|..|++++| +..|.+..+.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 56888999999999 99999999999999999999988743 69999999 899999999995 77789988888
Q ss_pred eccccchhH
Q 012034 102 GKAQKKSER 110 (472)
Q Consensus 102 ~~a~~~~~~ 110 (472)
+......+.
T Consensus 91 evL~GeeE~ 99 (121)
T 1owx_A 91 EVLEGEVEK 99 (121)
T ss_dssp EECCHHHHH
T ss_pred EECCCHHHH
Confidence 776654443
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=86.17 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=61.7
Q ss_pred CcceEEeCCCC----CCCCH----HHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcc
Q 012034 27 KFNNVFVKNLD----ESTTD----EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 98 (472)
Q Consensus 27 ~~~~l~V~nLp----~~~te----e~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~ 98 (472)
..-||+|.-.+ .++-+ .+|.+.|+.||+|.++++..| .+||+|.+.++|.+|++ |||..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 34577777766 34444 678899999999999999987 38999999999999998 9999999999
Q ss_pred eeeeccccc
Q 012034 99 WYVGKAQKK 107 (472)
Q Consensus 99 l~V~~a~~~ 107 (472)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999988653
No 382
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.1e-09 Score=83.58 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=61.4
Q ss_pred ccceeeeecCC----CCccH----HHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCee
Q 012034 130 QGLNLYIKNLG----DSIDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 201 (472)
Q Consensus 130 ~~~~l~V~nL~----~~~t~----e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~ 201 (472)
.+.||+|...+ .++.+ .+|.+.|+.||.|..+++..+ .+||+|.+.++|.+|++ |||..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 34577877766 24444 678899999999999999987 38999999999999997 9999999999
Q ss_pred EEEEEccc
Q 012034 202 LYVAVAQR 209 (472)
Q Consensus 202 l~V~~a~~ 209 (472)
|+|+++.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998864
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=4.6e-09 Score=98.16 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=66.5
Q ss_pred cceEEeCCC-----CCCCCHHHHHHHHhcCCCeeEEEEEECC-----CCCceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 28 FNNVFVKNL-----DESTTDEDLKKIFGEYGTITSAVVMRDG-----DGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 28 ~~~l~V~nL-----p~~~tee~L~~~F~~fG~I~~v~i~~d~-----~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
.+.+.+.|+ ..+-.+++|++.|++||.|.++.|.++. +++++|++||+|.+.++|.+|++.|||..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 444555554 2344678999999999999999998763 458999999999999999999999999999999
Q ss_pred ceeeecccc
Q 012034 98 EWYVGKAQK 106 (472)
Q Consensus 98 ~l~V~~a~~ 106 (472)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998753
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=7e-09 Score=96.94 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=62.6
Q ss_pred CccHHHHHHHHhccCceEEEEEeeCC-----CCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcccHH
Q 012034 142 SIDDEKLKELFSEFGTITSCKVMRDP-----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 211 (472)
Q Consensus 142 ~~t~e~L~~~F~~~G~I~~v~i~~~~-----~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~~k~ 211 (472)
+-.+++|++.|++||.|.++.|.++. ++.++|++||+|.+.++|.+|+..|||+.++|+.|.+.++....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 34568999999999999999998654 34899999999999999999999999999999999999987554
No 385
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=4e-09 Score=83.35 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=61.8
Q ss_pred CCcceEEeCCCCCC-----CCH----HHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCC
Q 012034 26 TKFNNVFVKNLDES-----TTD----EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 96 (472)
Q Consensus 26 ~~~~~l~V~nLp~~-----~te----e~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g 96 (472)
-..-||+|.-++.+ +-+ .+|.+.|+.||+|..+++..|+ +||+|.+.++|.+||+ |||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 35678999988643 333 5688999999999999999883 9999999999999998 99999999
Q ss_pred cceeeeccc
Q 012034 97 REWYVGKAQ 105 (472)
Q Consensus 97 ~~l~V~~a~ 105 (472)
|.|+|.+..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.9e-08 Score=79.57 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=61.1
Q ss_pred cccceeeeecCCCC-----ccH----HHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 129 FQGLNLYIKNLGDS-----IDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 129 ~~~~~l~V~nL~~~-----~t~----e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
....|++|..++.. +.+ .+|.+.|+.||.|..+++..+ -+||+|.+.++|.+||+ |+|..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 34568999888632 333 568899999999999999988 29999999999999998 99999999
Q ss_pred eeEEEEEcc
Q 012034 200 KPLYVAVAQ 208 (472)
Q Consensus 200 k~l~V~~a~ 208 (472)
+.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998753
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.4e-06 Score=70.26 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=66.2
Q ss_pred cceeeeecCCCCccHHHHHHHHhcc-----CceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEE
Q 012034 131 GLNLYIKNLGDSIDDEKLKELFSEF-----GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 205 (472)
Q Consensus 131 ~~~l~V~nL~~~~t~e~L~~~F~~~-----G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~ 205 (472)
..+|-+-|||+.++++.|+.+++++ |.|+.+.+..| -+-|+|+|.|..+|.+|...|+|.+|.|++|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5578899999999999999999999 99999999988 5579999999999999999999999999999998
Q ss_pred E
Q 012034 206 V 206 (472)
Q Consensus 206 ~ 206 (472)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.4e-06 Score=70.22 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=67.7
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcC-----CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEY-----GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~f-----G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
..++|-+-|||..+++..|+.+++++ |.|..+.+..|- +=|+|+|.|..+|-+|.-+|+|..|.|++|.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 47899999999999999999999999 999999999984 45999999999999999999999999999999
Q ss_pred ecc
Q 012034 102 GKA 104 (472)
Q Consensus 102 ~~a 104 (472)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=8.1e-05 Score=59.48 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhc-C----CCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCccee
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGE-Y----GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 100 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~-f----G~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~ 100 (472)
....+|.|.|||.+++++.|.-+|++ . |+|.++.... +-|+|+|.+.+.|++.++. ..+.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 45678999999999999999999997 2 5888877643 3689999999999999973 47889999999
Q ss_pred eeccccchhHHHHHHHHHHhhhhhhccccccceeeeecCCCCcc
Q 012034 101 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 144 (472)
Q Consensus 101 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 144 (472)
|.....+ ...+|++.+|+..++
T Consensus 78 V~P~~~~----------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR----------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC----------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC----------------------CcceEeeecCCCCCC
Confidence 9765433 234789999988765
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=0.00012 Score=58.77 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=62.3
Q ss_pred ceeeeecCCCCcc-----HHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEE
Q 012034 132 LNLYIKNLGDSID-----DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 206 (472)
Q Consensus 132 ~~l~V~nL~~~~t-----~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~ 206 (472)
++|+|.||+.++- .+.++++|..|+.+.+...++. =.-..|.|.+.++|.+|-..||+..+.|+.++|.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 5799999987662 2577899999999888888765 33579999999999999999999999999999999
Q ss_pred cc
Q 012034 207 AQ 208 (472)
Q Consensus 207 a~ 208 (472)
++
T Consensus 81 gq 82 (104)
T 1wey_A 81 AQ 82 (104)
T ss_dssp CC
T ss_pred cC
Confidence 88
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.00012 Score=58.67 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=63.5
Q ss_pred CcceEEeCCCCCCC-CH----HHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceee
Q 012034 27 KFNNVFVKNLDEST-TD----EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 101 (472)
Q Consensus 27 ~~~~l~V~nLp~~~-te----e~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V 101 (472)
--++|+|.||+.++ +. +.++++|..|+++.+....+. -.-..|.|.+.++|.+|-..|++..+.|+.++|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35789999999766 32 577899999999998777765 224689999999999999999999999999999
Q ss_pred ecccc
Q 012034 102 GKAQK 106 (472)
Q Consensus 102 ~~a~~ 106 (472)
-+++.
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.33 E-value=0.00086 Score=52.82 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=56.7
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCC--C-CceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD--G-KSKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~--g-~skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
++|.|++||..+||+++.+.++.+.++........+. + ..-.-|||.|.+.|++....+.++|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 6799999999999999999999998877666655421 1 2335799999999999999999999987543
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.96 E-value=0.0023 Score=50.54 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=46.0
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHC
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ln 90 (472)
...-++| ++|+++...||.++|+.||-|. |..+.|. .|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3444566 9999999999999999999644 5666662 79999999999999998763
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0018 Score=53.43 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=58.7
Q ss_pred EcCcccchhhhhhhccCCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHH
Q 012034 10 VGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 89 (472)
Q Consensus 10 v~~~~~~~~r~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~l 89 (472)
+.+|....+..........+-|.|-++|... ...|.+.|++||+|.+... . + ...+-.|.|.+..+|++||.+
T Consensus 6 ~~pf~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~-~--~~NWihI~Y~s~~~A~rAL~k- 78 (119)
T 1wwh_A 6 SGPFYTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--S-N--TGNWMHIRYQSKLQARKALSK- 78 (119)
T ss_dssp ---------------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--C-S--SSSEEEEEESSHHHHHHHHTT-
T ss_pred cCcceeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--C-C--CCCeEEEEeCCHHHHHHHHHh-
Confidence 3344444444333334457789999999885 6677888999999998775 2 1 235999999999999999975
Q ss_pred CCCccCC-cceeeeccccc
Q 012034 90 NGKKFDD-REWYVGKAQKK 107 (472)
Q Consensus 90 ng~~i~g-~~l~V~~a~~~ 107 (472)
||..|.+ -.|-|.+...+
T Consensus 79 NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 79 DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp TTCEETTTEECEEEECCCH
T ss_pred CCeEecCCEEEEEEECCCH
Confidence 9999875 44555554433
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.84 E-value=0.0049 Score=49.23 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=56.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhc-----cCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEE
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSE-----FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 204 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~-----~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V 204 (472)
.+.+|.|.|||..++++.|.-+|++ -|.|.++.... +-|+|+|.+.+.|++.++ -..+.+.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 4568999999999999999999987 26888888754 368999999999999884 3356778888888
Q ss_pred EE
Q 012034 205 AV 206 (472)
Q Consensus 205 ~~ 206 (472)
.-
T Consensus 79 ~P 80 (104)
T 2dhx_A 79 RP 80 (104)
T ss_dssp EE
T ss_pred Ec
Confidence 74
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.75 E-value=0.0022 Score=50.75 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=44.2
Q ss_pred EEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHC
Q 012034 31 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90 (472)
Q Consensus 31 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ln 90 (472)
++| ++|+++...||.++|+.||- ..|..+.|. .|||.|.+++.|..|+..++
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 555 99999999999999999994 345666662 79999999999999999775
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.62 E-value=0.0078 Score=47.28 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=56.1
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC---CCCcccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP---SGISKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~---~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
++|.|++||..+|++++.+.++....+......... .-..-.-|+|.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 468999999999999999999999888777665543 11234569999999999999999999998743
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.046 Score=44.94 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=57.5
Q ss_pred ccceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecC-eeEEEEEcc
Q 012034 130 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVAQ 208 (472)
Q Consensus 130 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g-k~l~V~~a~ 208 (472)
..+-|.|-+.+... .+.+.+.|++||.|.+..... ......|.|.+..+|.+|+ ..||..++| -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 34568888888764 567788999999999887622 2347899999999999999 569999975 556666655
Q ss_pred cHH
Q 012034 209 RKE 211 (472)
Q Consensus 209 ~k~ 211 (472)
.+.
T Consensus 96 d~~ 98 (119)
T 1wwh_A 96 DKN 98 (119)
T ss_dssp CHH
T ss_pred CHH
Confidence 443
No 399
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.57 E-value=0.036 Score=43.66 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=43.7
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhC
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~ 193 (472)
.+|+-.+|.++.-.||.++|+.||.|. |+.+.| .-|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~-I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCC-CEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEE-EEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 455449999999999999999999543 455554 269999999999999998763
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.56 E-value=0.0079 Score=47.63 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=50.4
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECC--CCC-ceeEEEEEeCCHHHHHHHHHHHCCCccCCc
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--DGK-SKCFGFVNFENADDAAKAVEALNGKKFDDR 97 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~--~g~-skG~aFV~F~~~e~A~~Av~~lng~~i~g~ 97 (472)
.-+|.|+.||..+||+++.+.++.+=++........+ .+. .-.-|||.|.+.|+.....+.++|..+-+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3469999999999999999888876554322221111 111 124689999999999999999999887543
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.32 E-value=0.0081 Score=50.16 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=55.7
Q ss_pred CcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEEC-C---------CC-----CceeEEEEEeCCHHHHHHHHHHHCC
Q 012034 27 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-G---------DG-----KSKCFGFVNFENADDAAKAVEALNG 91 (472)
Q Consensus 27 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~---------~g-----~skG~aFV~F~~~e~A~~Av~~lng 91 (472)
..+-|.|-++|.+.+. .+.+.|++||.|.+-.-..+ . .. ....+-.|.|.+..+|.+||.+ ||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 4567889999776554 66788999999876221100 0 00 1245889999999999999985 99
Q ss_pred CccCCcceeeecccc
Q 012034 92 KKFDDREWYVGKAQK 106 (472)
Q Consensus 92 ~~i~g~~l~V~~a~~ 106 (472)
..|.|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888877753
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.13 E-value=0.0096 Score=60.87 Aligned_cols=58 Identities=12% Similarity=0.267 Sum_probs=43.8
Q ss_pred CCcceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHH
Q 012034 26 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 26 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ 88 (472)
...++|||. .+.++++.+|.++|+.||.|.++...++ . .-||.|+|.+.+++..++..
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S---SEEEEEECC---CCHHHHSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C---CeEEEEEeCCHHHHHHHHhc
Confidence 457889997 8999999999999999999999877654 2 25999999999999977653
No 403
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.46 E-value=0.042 Score=43.45 Aligned_cols=53 Identities=26% Similarity=0.403 Sum_probs=43.5
Q ss_pred eeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhC
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 193 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~ 193 (472)
+|+-++|.++.-.||.++|+.||. ..|+.+.| .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999994 34565655 269999999999999998774
No 404
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.85 E-value=0.069 Score=42.23 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=50.8
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCC--C-CCcccEEEEEcCCHHHHHHHHHHhCCcEecC
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--S-GISKGSGFVAFSTPEEASRALAEMNGKMIVS 199 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~--~-g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~g 199 (472)
.+|.|+.||..+|++++.+.++..-.++........ . ...-.-|+|.|.+.++.....+..+|..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 469999999999999999988876555443332221 1 1122458999999999999999999998743
No 405
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.21 E-value=0.21 Score=41.68 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=53.6
Q ss_pred eeeeecCCCCccHHHHHHHHhccCceEEE-EEeeCCC-------------C-CcccEEEEEcCCHHHHHHHHHHhCCcEe
Q 012034 133 NLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDPS-------------G-ISKGSGFVAFSTPEEASRALAEMNGKMI 197 (472)
Q Consensus 133 ~l~V~nL~~~~t~e~L~~~F~~~G~I~~v-~i~~~~~-------------g-~s~g~afV~f~s~~~A~~Ai~~l~g~~i 197 (472)
-+.|-+.|.+. ...+-+.|++||.|.+- ...++.. . .......|+|++..+|.+|+ ..||..|
T Consensus 9 ~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVF 86 (132)
T ss_dssp EEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEE
T ss_pred EEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEe
Confidence 46677776544 45567889999998772 2221100 0 12456789999999999999 7899999
Q ss_pred cCeeEEEEEccc
Q 012034 198 VSKPLYVAVAQR 209 (472)
Q Consensus 198 ~gk~l~V~~a~~ 209 (472)
.|.-|-|....+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999888887753
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.64 E-value=0.069 Score=54.57 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=41.1
Q ss_pred ceeeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHH
Q 012034 132 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 191 (472)
Q Consensus 132 ~~l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~ 191 (472)
++|+|. .+..+++.+|.++|+.||.|.++....+ . .-|+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S---SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C---CeEEEEEeCCHHHHHHHHhc
Confidence 379997 7999999999999999999999988765 2 35999999999998877643
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.82 E-value=1.3 Score=45.86 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=44.6
Q ss_pred cceEEeCCCCCCCCHHHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCC
Q 012034 28 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 91 (472)
Q Consensus 28 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng 91 (472)
...++|+ +|..|...+|.++|+.||.| +|..+.| ..|||.|.+.++|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455565 99999999999999999964 4444433 3799999999999999998853
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=68.84 E-value=9.6 Score=39.30 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=42.4
Q ss_pred eeeecCCCCccHHHHHHHHhccCceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCC
Q 012034 134 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 194 (472)
Q Consensus 134 l~V~nL~~~~t~e~L~~~F~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g 194 (472)
++|+ ++..+...+|.+.|+.||.| +|+.+.+ ..|||.|.+.+.|..++..++.
T Consensus 443 l~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 443 LHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 4554 88888999999999999954 4554443 3699999999999999998854
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=61.78 E-value=17 Score=26.55 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhcCC-----CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHCCCccCCcceeeeccc
Q 012034 39 STTDEDLKKIFGEYG-----TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 105 (472)
Q Consensus 39 ~~tee~L~~~F~~fG-----~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~lng~~i~g~~l~V~~a~ 105 (472)
.++..+|..++..-+ .|-.+.+..+ |.||+-.. +.|..+++.|++..+.|+.+.|+.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 455667777776544 4556666544 88988865 55788999999999999999988764
No 410
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=57.95 E-value=8.1 Score=30.53 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEE----EEC-CCCCceeEEEEEeCCHHHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVV----MRD-GDGKSKCFGFVNFENADDAAKAV 86 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i----~~d-~~g~skG~aFV~F~~~e~A~~Av 86 (472)
...+..+|++.+.+ |+.-.++.+ ... ..|+++|||.| |.|.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 67899999998875 553222222 222 35788999987 88888777544
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.73 E-value=23 Score=27.04 Aligned_cols=58 Identities=16% Similarity=0.290 Sum_probs=43.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHH
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ 88 (472)
.|-|+-..+.+.+..+|++.+++ || .|.+|..+....|.. =|||.+....+|...-..
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHHh
Confidence 34566667789999999999997 66 678888877655433 489999887777665443
No 412
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=54.94 E-value=9.2 Score=30.27 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHhc-CCCeeE---E-EEEEC-CCCCceeEEEEEeCCHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITS---A-VVMRD-GDGKSKCFGFVNFENADDAAK 84 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~---v-~i~~d-~~g~skG~aFV~F~~~e~A~~ 84 (472)
...+..+|++.+.+ |+.-.+ | .+... ..|+++|||.| |.|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 67899999998875 453222 2 22222 35789999987 888888764
No 413
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=54.33 E-value=10 Score=30.29 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEE---EEC--CCCCceeEEEEEeCCHHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVV---MRD--GDGKSKCFGFVNFENADDAAKA 85 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i---~~d--~~g~skG~aFV~F~~~e~A~~A 85 (472)
...+..+|++.+.+ |+.-.++.+ ++. ..|+++|||.| |.|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 57888999988765 553222222 222 35789999987 8888887753
No 414
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=46.44 E-value=19 Score=29.92 Aligned_cols=47 Identities=30% Similarity=0.538 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEEEE----C-CCCCceeEEEEEeCCHHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVVMR----D-GDGKSKCFGFVNFENADDAAKA 85 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i~~----d-~~g~skG~aFV~F~~~e~A~~A 85 (472)
...+..+|++.+.. |+.-.++.++. . ..|++.|||.| |.+.|.|++.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 57899999998865 66422222222 2 35788999988 8888887643
No 415
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.52 E-value=47 Score=28.77 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=36.1
Q ss_pred EEeCCCCC-C--------CCHHHHHHHH--hcCCCeeEEEEEECCCCCceeEEEEEeCCHHH
Q 012034 31 VFVKNLDE-S--------TTDEDLKKIF--GEYGTITSAVVMRDGDGKSKCFGFVNFENADD 81 (472)
Q Consensus 31 l~V~nLp~-~--------~tee~L~~~F--~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~ 81 (472)
+.|-|++. . .+..+|++.| +.|..+. |...++..| .+|++.|.|.+.-+
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChH
Confidence 56666665 2 4457999977 9999865 677777666 57999999986543
No 416
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=41.94 E-value=8.7 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEEEEC-----CCCCceeEEEEEeCCHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVVMRD-----GDGKSKCFGFVNFENADDAAK 84 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i~~d-----~~g~skG~aFV~F~~~e~A~~ 84 (472)
...+..+|++.+.+ |+.-.++.++.. ..|+++|||.| |.|.+.|++
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 57788899987765 443233333333 24678899887 667666654
No 417
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=39.93 E-value=21 Score=30.06 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhc-CCCeeEEEEEEC-----CCCCceeEEEEEeCCHHHHHHH
Q 012034 38 ESTTDEDLKKIFGE-YGTITSAVVMRD-----GDGKSKCFGFVNFENADDAAKA 85 (472)
Q Consensus 38 ~~~tee~L~~~F~~-fG~I~~v~i~~d-----~~g~skG~aFV~F~~~e~A~~A 85 (472)
...+..+|++.+.. |+.-.++.++.. ..|++.|||.| |.+.|.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 57889999998876 654233333332 35788999998 8888887643
No 418
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=38.39 E-value=33 Score=26.05 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=40.3
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHH
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKA 85 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~A 85 (472)
.+-|+-..+.+.+..+|++.+++ || .|.+|..+.-..|. -=|||.+...++|...
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~--KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE--KKAVVRLSEDDDAQEV 78 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS--EEEEEEECTTSCHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc--eEEEEEECCCCcHHHH
Confidence 34566667789999999999987 67 68888887765442 2489999776665443
No 419
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=36.04 E-value=52 Score=27.78 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=42.4
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHH
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ 88 (472)
.|-|+--++.+.+..+|++.+++ || .|.+|..+....|.. =|||.+....+|...-..
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHHh
Confidence 35566667789999999999987 56 678888887765533 489999877666654433
No 420
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=35.99 E-value=49 Score=27.68 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=42.6
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHH
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 88 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ 88 (472)
.|-|+--++.+.+..+|++.+++ || .|.+|..+.-..|.. =|||.+....+|...-..
T Consensus 79 ~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 79 GNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHHh
Confidence 35666667789999999999987 56 688888887665533 489999877666654433
No 421
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=35.75 E-value=47 Score=24.02 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=38.7
Q ss_pred CCccHHHHHHHHhccC-----ceEEEEEeeCCCCCcccEEEEEcCCHHHHHHHHHHhCCcEecCeeEEEEEcc
Q 012034 141 DSIDDEKLKELFSEFG-----TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 208 (472)
Q Consensus 141 ~~~t~e~L~~~F~~~G-----~I~~v~i~~~~~g~s~g~afV~f~s~~~A~~Ai~~l~g~~i~gk~l~V~~a~ 208 (472)
+.++.-+|...+..-+ .|-.++|..+ |.||.-.. +.|..++..+++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4556667776666443 3556777654 78888765 44788999999999999999988764
No 422
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=33.84 E-value=20 Score=24.33 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=18.9
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q 012034 423 TEVLHLLESPEALKAKVAEAM 443 (472)
Q Consensus 423 ~e~~~~~~~~~~l~~~v~~a~ 443 (472)
+.|++||.+.+.|-.+|-||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 458999999999999999996
No 423
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.33 E-value=67 Score=27.28 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=40.9
Q ss_pred eEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHH
Q 012034 30 NVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 87 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~ 87 (472)
|-|+-.++.+.+..+|++.+++ || .|.+|..+.-..|. -=|||.+....+|.....
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~--KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE--KKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSC--EEEEEEECTTSCHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc--eEEEEEECCCCcHHHHHH
Confidence 5666667789999999999987 67 68888877765442 248999987766554443
No 424
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=27.55 E-value=19 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.9
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q 012034 423 TEVLHLLESPEALKAKVAEAM 443 (472)
Q Consensus 423 ~e~~~~~~~~~~l~~~v~~a~ 443 (472)
..|++||.+.+.+-.++-||+
T Consensus 16 qal~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 16 QAFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 558999999999999999996
No 425
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.14 E-value=44 Score=28.31 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred eEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHH
Q 012034 30 NVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 86 (472)
Q Consensus 30 ~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av 86 (472)
|-|+--++.+.+..+|++.+++ || .|.+|..+...+|.- =|||.+....+|...-
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvA 146 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKK--KAYVKLTPDYDALDVA 146 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEcCCCCcHHHHH
Confidence 4566666789999999999987 56 678888877655533 4899998776666543
No 426
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.39 E-value=56 Score=34.66 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHH----hcCCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHHC
Q 012034 35 NLDESTTDEDLKKIF----GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 90 (472)
Q Consensus 35 nLp~~~tee~L~~~F----~~fG~I~~v~i~~d~~g~skG~aFV~F~~~e~A~~Av~~ln 90 (472)
..+++.+--+|+.+| ..+|-|+++.+.--+.-..+.++++.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 344555555788888 26889999888766555567789999999999999998764
No 427
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=22.89 E-value=78 Score=22.74 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.4
Q ss_pred chhhhH-hhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHh
Q 012034 410 AAKVTG-MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 452 (472)
Q Consensus 410 a~kitg-mll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~~ 452 (472)
...|+| .||.++.++|-.|==..---+.||-.|+.-|+....+
T Consensus 30 ~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~ek 73 (74)
T 2gle_A 30 AQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLEK 73 (74)
T ss_dssp TTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHHH
T ss_pred HcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 345676 6888999987766333344677888899888876543
No 428
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.33 E-value=96 Score=22.89 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=31.6
Q ss_pred chhhhH-hhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 012034 410 AAKVTG-MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451 (472)
Q Consensus 410 a~kitg-mll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~ 451 (472)
...||| .||+++.++|-.|=-..---+.||-.|+..|+....
T Consensus 36 ~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~~ 78 (83)
T 2ean_A 36 REKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNS 78 (83)
T ss_dssp HHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 445676 578899999988754444578889999999986653
No 429
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.18 E-value=19 Score=30.45 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCeeEEEEEECCCCCceeEEEEEeC
Q 012034 43 EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 77 (472)
Q Consensus 43 e~L~~~F~~fG~I~~v~i~~d~~g~skG~aFV~F~ 77 (472)
+|+.++|...|.|+.. .+ .||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC----CCCeeEEeeC
Confidence 4556677777776533 22 4789999875
No 430
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.03 E-value=1.4e+02 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=34.4
Q ss_pred ceeeeecCCC-C--------ccHHHHHHHH--hccCceEEEEEeeCCCCCcccEEEEEcCCHH
Q 012034 132 LNLYIKNLGD-S--------IDDEKLKELF--SEFGTITSCKVMRDPSGISKGSGFVAFSTPE 183 (472)
Q Consensus 132 ~~l~V~nL~~-~--------~t~e~L~~~F--~~~G~I~~v~i~~~~~g~s~g~afV~f~s~~ 183 (472)
....|-|++. . .+..+|++.| +.|..+. ++.+.+..| ..|++.|.|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCCh
Confidence 3456777775 2 3457899977 9998765 555555455 4889999997743
No 431
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=20.69 E-value=57 Score=31.72 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=42.7
Q ss_pred hhhhhhhHhhcCCccchhhhHhhcCCCh-----HHHHHhhCC---------hHHHHHHHHHHHHHHHHHHHhhc
Q 012034 395 GESLYPLVEQLERDAAAKVTGMLLEMDQ-----TEVLHLLES---------PEALKAKVAEAMEVLRSVAQQQA 454 (472)
Q Consensus 395 g~~l~~~v~~~~~~~a~kitgmll~~~~-----~e~~~~~~~---------~~~l~~~v~~a~~~l~~~~~~~~ 454 (472)
.+.|||.+++. ...+-|..|.-|.|. .+|..++++ -+.|.+++.+.+..|..|-.++.
T Consensus 70 E~~LFP~le~~--g~~~p~~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe 141 (369)
T 3cax_A 70 EMLIFPYIERR--GLTVIATVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFREN 141 (369)
T ss_dssp HHHTHHHHHTT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHh--CCCCCCchHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999654 344778889888876 456666655 46788889999999999887664
No 432
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=20.54 E-value=1.3e+02 Score=21.95 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=31.4
Q ss_pred chhhhH-hhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q 012034 410 AAKVTG-MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 451 (472)
Q Consensus 410 a~kitg-mll~~~~~e~~~~~~~~~~l~~~v~~a~~~l~~~~~ 451 (472)
..+||| .||+++.++|-.|=-..---+.||-.|+..|+....
T Consensus 32 ~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~ 74 (80)
T 3bs5_B 32 REKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNY 74 (80)
T ss_dssp HHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 455676 578899999988744444468899999999987653
No 433
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=20.15 E-value=1.5e+02 Score=22.67 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=27.0
Q ss_pred ceEEeCCCCCCCCHHHHHHHHhc-CC-CeeEEEEEEC
Q 012034 29 NNVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRD 63 (472)
Q Consensus 29 ~~l~V~nLp~~~tee~L~~~F~~-fG-~I~~v~i~~d 63 (472)
.|-|+-.++.+.+..+|++.+++ || .|.+|..+.-
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~ 63 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV 63 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe
Confidence 35666777889999999999997 66 6777776653
Done!