BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012037
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 9/203 (4%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K++LVPV G+EE E VIIVD L RAG QVT A+V +L+V+ S G L A+ ++ CS
Sbjct: 10 KRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSA 69
Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
+ FD +ALPGG+ G+ D L + +++ +L AICA PA+ +
Sbjct: 70 EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARX 129
Query: 205 TCHPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
TCHP F D +P+ + + + + + TS+GPGT+ EFAL + L G +A+ +
Sbjct: 130 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAP 189
Query: 263 LLMHNADNSLKKEEFNEVEWFFD 285
++H ++ E+ F D
Sbjct: 190 XVLH-------PQQLTELSGFID 205
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
R+L+P+A+GSEE E V IVD L RA V A+V Q+ S+GV + A++++ +
Sbjct: 11 RILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70
Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 407
+D + LPGGV GA+ S L L+ G++ A+C++P +V
Sbjct: 71 AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXT 130
Query: 408 XXPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDF 444
P+ + +E ++ +V ++TS+G ++F
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169
>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 110/203 (54%), Gaps = 9/203 (4%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K++LVPV G+EE E VIIVD L RAG QVT A+V +L+V+ S G L A+ ++ CS
Sbjct: 10 KRILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSA 69
Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
+ FD +ALPGG+ G+ D L + +++ +L AI A PA+ +
Sbjct: 70 EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARX 129
Query: 205 TCHPAFTDKLPTFWAVKSNI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGEL 262
TCHP F D +P+ + + + + + TS+GPGT+ EFAL + L G +A+ +
Sbjct: 130 TCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAP 189
Query: 263 LLMHNADNSLKKEEFNEVEWFFD 285
++H ++ E+ F D
Sbjct: 190 XVLH-------PQQLTELSGFID 205
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
R+L+P+A+GSEE E V IVD L RA V A+V Q+ S+GV + A++++ +
Sbjct: 11 RILVPVAHGSEEXETVIIVDTLVRAGFQVTXAAVGDKLQVQGSRGVWLTAEQTLEACSAE 70
Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 407
+D + LPGGV GA+ S L L+ G++ A+ ++P +V
Sbjct: 71 AFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXT 130
Query: 408 XXPSVIGKLTNEVVNGTKVVVDG--KVITSRGLANVIDF 444
P+ + +E ++ +V ++TS+G ++F
Sbjct: 131 CHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTALEF 169
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDVLRRAG +VT+A + + V+ S + D S+ +
Sbjct: 7 KRALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
L++ +
Sbjct: 186 APLVLKD 192
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD+LRRA + V VA + + S+ V I D S+ DA E
Sbjct: 8 RALVILAKGAEEMETVIPVDVLRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 68 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
LV +
Sbjct: 188 LVLK 191
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 4/186 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K LV + G EEME +I DVLRRAG +VT+A + V+ S +++ DTS++ +
Sbjct: 6 KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVAS 65
Query: 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
FD++ LPGG+ GS + + ++ + Q L AICAAP V L G+ K +
Sbjct: 66 DKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTV-LAKHGVASGKSL 124
Query: 205 TCHPAFTDKLPTFWAVKSNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGE- 261
T +P+ +L ++ + V G + TSRGPGT++EFAL + E+L G+ +E+ +
Sbjct: 125 TSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKG 184
Query: 262 LLLMHN 267
LL+ +N
Sbjct: 185 LLVAYN 190
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 2/181 (1%)
Query: 291 LIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY 350
L+ +A G+EE+E + D+LRRA + V VA + + S+ V+I+ D S++ A +
Sbjct: 9 LVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKF 68
Query: 351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXXXXP 410
D+++LPGG+ G+ + +S ++ LL+ Q+ G + A+C++P V P
Sbjct: 69 DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYP 128
Query: 411 SVIGKLTNE--VVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 468
S+ +L N V+ VV DG +ITSRG +FAL I + G + + VA+GL+
Sbjct: 129 SMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVA 188
Query: 469 Y 469
Y
Sbjct: 189 Y 189
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGCGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGCGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVIRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 5/185 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 3 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 62
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 63 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 121
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 122 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 181
Query: 261 ELLLM 265
L++
Sbjct: 182 APLVL 186
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 4 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 63
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 64 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 123
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 465 LVFE 468
LV +
Sbjct: 184 LVLK 187
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEM+ VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE++ V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEM+ VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE++ V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 7 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSF+FAL +VE L G+ VA ++
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
L++ +
Sbjct: 186 APLVLKD 192
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 8 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 68 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG FALAIV G V
Sbjct: 128 THPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
LV +
Sbjct: 188 LVLK 191
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L ICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + +C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 7 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L ICA P LL + +
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
L++ +
Sbjct: 186 APLVLKD 192
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 8 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + +C+ P
Sbjct: 68 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
LV +
Sbjct: 188 LVLK 191
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEM VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE+ V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMLTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 3 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKK 62
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 63 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP-TALLAHEIGFGSK 121
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEI 259
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 122 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQV 180
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 4 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVIXPDASLEDAKKE 63
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 64 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVT 123
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 465 LVFE 468
LV +
Sbjct: 184 LVLK 187
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 3 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 62
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 63 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP-TALLAHEIGFGSK 121
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 122 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 181
Query: 261 ELLLM 265
L++
Sbjct: 182 APLVL 186
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 4 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 63
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 64 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPTALLAHEIGFGSKVT 123
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 124 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 183
Query: 465 LVFE 468
LV +
Sbjct: 184 LVLK 187
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EE E VI VDV RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE E V VD+ RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EE E VI VDV RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AICA P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA-E 347
R L+ +A G+EE E V VD+ RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEXETVIPVDVXRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+C+ P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEM VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHN 267
L++ +
Sbjct: 183 APLVLKD 189
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+ V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMNTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG +FALAIV G V
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAP 184
Query: 465 LVFE 468
LV +
Sbjct: 185 LVLK 188
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 5/187 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEME VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 7 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 66
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 67 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 125
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSF+FAL +VE L G+ VA ++
Sbjct: 126 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVK 185
Query: 261 ELLLMHN 267
L++ +
Sbjct: 186 APLVLKD 192
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE+E V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 8 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 67
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 68 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 127
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEG 464
P K+ N + +V DG ++TSRG FALAIV G V
Sbjct: 128 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAP 187
Query: 465 LVFE 468
LV +
Sbjct: 188 LVLK 191
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEM+ VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHNADN 270
L++ + ++
Sbjct: 183 APLVLKDLEH 192
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE++ V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMDTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 454
P K+ N + +V DG ++TSRG +FALAIV G
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 174
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 5/190 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSH 144
K+ LV + G EEM+ VI VDV+RRAG +VT+A + + V+ S + D S+ +
Sbjct: 4 KRALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKK 63
Query: 145 Q-VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
+ +D++ LPGG G+ L + +K+I +Q K L AI A P LL + +
Sbjct: 64 EGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP-TALLAHEIGFGSK 122
Query: 204 ITCHPAFTDKLPT---FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIG 260
+T HP DK+ + ++ + G + TSRGPGTSFEFAL +VE L G+ VA ++
Sbjct: 123 VTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVK 182
Query: 261 ELLLMHNADN 270
L++ + ++
Sbjct: 183 APLVLKDLEH 192
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AE 347
R L+ +A G+EE++ V VD++RRA + V VA + + S+ V I D S+ DA E
Sbjct: 5 RALVILAKGAEEMQTVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE 64
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
YD+++LPGG GA+ L +S +K++LKEQ+ + A+ + P
Sbjct: 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPTALLAHEIGFGSKVT 124
Query: 408 XXPSVIGKLTN---EVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFG 454
P K+ N + +V DG ++TSRG +FALAIV G
Sbjct: 125 THPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNG 174
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
Query: 88 LVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCSHQ 145
LV + G+EE EAV +D+L R G +VT ASV + L + S G +L+AD + +
Sbjct: 6 LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADG 65
Query: 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT 205
+D+I LPGG+ G+ RD +L + + R+ AICAAPA L+P + +T
Sbjct: 66 EYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMT 125
Query: 206 CHPAFTDKLPTFWAVKSNIHVSGEVT--TSRGPGTSFEFALCLVEQLFGESVAKEIGELL 263
P DK+P + + V TS+GPGT+ +F L +++ L G A E+ L
Sbjct: 126 GFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL 185
Query: 264 LM 265
+M
Sbjct: 186 VM 187
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 291 LIPIANGSEEIEIVTIVDILRRAKVDVVVASV--ERSTQIVASQGVKIIADKSISDAAES 348
L+ +A GSEE E VT +D+L R + V ASV + + I S+GVK++AD + + A+
Sbjct: 6 LVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADG 65
Query: 349 VYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP-IVXXXXXXXXXXXXX 407
YD+I+LPGG+ GAE + S +L + +K+ +GRI A+C++P V
Sbjct: 66 EYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMT 125
Query: 408 XXPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANVIDFALAIVSKFFGHARTRSVAEGL 465
P++ K+ E +VV D +V +TS+G IDF L I+ G + VA L
Sbjct: 126 GFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL 185
Query: 466 VF 467
V
Sbjct: 186 VM 187
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
QV + EP V ASSG L A TS ++C D+I +PGG + D + L I
Sbjct: 35 QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
+QA R ++C+ ++ L GLL+ K+ T H A+ + L A+ + V G +
Sbjct: 91 RQQAARARYVTSVCSG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
T G +FAL L +LF + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
+VAS G+ + A S +D D+I +PGG ++ + L +++Q R +
Sbjct: 46 VVASSGLVLQATTSFADCPP--LDVICIPGGTGVGALMEDPQALA-FIRQQAARARYVTS 102
Query: 388 VCSSPIVXXXXXXXX---XXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 444
VCS +V ++ L V+ +VV DG ++T G+ IDF
Sbjct: 103 VCSGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVH-ERVVRDGNLLTGGGITAGIDF 161
Query: 445 ALAIVSKFFGHARTRSVAEGLVFEY 469
AL + ++ F A + V L EY
Sbjct: 162 ALTLAAELFDAATAQRVQ--LQLEY 184
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
QV + EP V ASSG L A TS ++C D+I +PGG + D + L I
Sbjct: 35 QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
+QA R ++C ++ L GLL+ K+ T H A+ + L A+ + V G +
Sbjct: 91 RQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
T G +FAL L +LF + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
+VAS G+ + A S +D D+I +PGG ++ + L +++Q R +
Sbjct: 46 VVASSGLVLQATTSFADCPP--LDVICIPGGTGVGALMEDPQALA-FIRQQAARARYVTS 102
Query: 388 VCSSPIVXXXXXXXX---XXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 444
VC+ +V ++ L V+ +VV DG ++T G+ IDF
Sbjct: 103 VCTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVH-ERVVRDGNLLTGGGITAGIDF 161
Query: 445 ALAIVSKFFGHARTRSVAEGLVFEY 469
AL + ++ F A + V L EY
Sbjct: 162 ALTLAAELFDAATAQRVQ--LQLEY 184
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 342
M +V + +A+G++EIE I +RA++ D V + + S+ V++ A++S
Sbjct: 3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 343 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKE-QKVAGRIYGAVCSSPIVXXX 397
+D YD+ I+PGG GA+ L + +++++KE K + G + + P+
Sbjct: 63 EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGPLT-AK 121
Query: 398 XXXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKF 452
PSV G+L G K VV++ +ITS+G + F L ++ +
Sbjct: 122 TSGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQV 178
Query: 453 FGHARTRSVAEGL 465
+ +V + L
Sbjct: 179 ASKDKYNAVYKSL 191
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLVADTSISNCS 143
KV + V GT+E+E + +RA + V + V+ S + A+ S
Sbjct: 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIP 65
Query: 144 H-----QVFDLIALPGGMPGSVRLRDCEILKKITSK-QAEEKRLYGAICAAPAVTLLPWG 197
+ +D+ +PGG G+ L ++++ + + + G I A P +T G
Sbjct: 66 SADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGP-LTAKTSG 124
Query: 198 LLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
L KQIT HP+ +L + + + + + TS+GPGT+ F L L+EQ+
Sbjct: 125 L-PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQV 178
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
QV + EP V ASSG L A TS ++C D+I +PGG + D + L I
Sbjct: 35 QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFIR 91
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
+ A + Y A ++ L GLL+ K+ T H A+ + L A+ + V G +
Sbjct: 92 QQAARAR--YVTSVATGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
T G +FAL L +LF + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
+VAS G+ + A S +D D+I +PGG ++ + L +++Q R +
Sbjct: 46 VVASSGLVLQATTSFADCPP--LDVICIPGGTGVGALMEDPQALA-FIRQQAARARYVTS 102
Query: 388 VCSSPIVXXXXXXXX---XXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 444
V + +V ++ L V+ +VV DG ++T G+ IDF
Sbjct: 103 VATGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVH-ERVVRDGNLLTGGGITAGIDF 161
Query: 445 ALAIVSKFFGHARTRSVAEGLVFEY 469
AL + ++ F A + V L EY
Sbjct: 162 ALTLAAELFDAATAQRVQ--LQLEY 184
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 342
M +V + +A+G++EIE I +RA++ D V + + S+ V++ A++S
Sbjct: 3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 343 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXX 398
+D YD+ I+PGG GA+ L + +++++KE + + + ++
Sbjct: 63 EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGVLTAKT 122
Query: 399 XXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFF 453
PSV G+L G K VV++ +ITS+G + F L ++ +
Sbjct: 123 SGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVA 179
Query: 454 GHARTRSVAEGL 465
+ +V + L
Sbjct: 180 SKDKYNAVYKSL 191
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLVADTSISNCS 143
KV + V GT+E+E + +RA + V + V+ S + A+ S
Sbjct: 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIP 65
Query: 144 H-----QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 198
+ +D+ +PGG G+ L ++++ + ++ + + A +T GL
Sbjct: 66 SADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGVLTAKTSGL 125
Query: 199 LRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
KQIT HP+ +L + + + + + TS+GPGT+ F L L+EQ+
Sbjct: 126 -PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQV 178
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSI- 342
M +V + +A+G++EIE I +RA++ D V + + S+ V++ A++S
Sbjct: 3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYK 62
Query: 343 ----SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXX 398
+D YD+ I+PGG GA+ L + +++++KE + + + +
Sbjct: 63 EIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGTLTAKT 122
Query: 399 XXXXXXXXXXXPSVIGKLTNEVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFF 453
PSV G+L G K VV++ +ITS+G + F L ++ +
Sbjct: 123 SGLPNKQITGHPSVRGQLEE---GGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVA 179
Query: 454 GHARTRSVAEGL 465
+ +V + L
Sbjct: 180 SKDKYNAVYKSL 191
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--VEASSGTRLVADTSISNCS 143
KV + V GT+E+E + +RA + V + V+ S + A+ S
Sbjct: 6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIP 65
Query: 144 H-----QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 198
+ +D+ +PGG G+ L ++++ + ++ + + A +T GL
Sbjct: 66 SADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGTLTAKTSGL 125
Query: 199 LRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
KQIT HP+ +L + + + + + TS+GPGT+ F L L+EQ+
Sbjct: 126 -PNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQV 178
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ 145
KVL E++E + L+ G +V +AS E + + G + D + + +
Sbjct: 2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFE-RGTITGKHGYSVKVDLTFDKVNPE 60
Query: 146 VFDLIALPGG-MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQI 204
FD + LPGG P VRL + + I K E + +IC P + L+ G+LR ++
Sbjct: 61 EFDALVLPGGRAPERVRLNEKAV--SIARKXFSEGKPVASICHGPQI-LISAGVLRGRKG 117
Query: 205 TCHPAFTDKLPTF---WAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQL 250
T +P D W V + + V G +SR P + + V+ L
Sbjct: 118 TSYPGIKDDXINAGVEW-VDAEVVVDGNWVSSRVPADLYAWXREFVKLL 165
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
QV + EP V ASSG L A TS ++C D+I +PGG + D + L I
Sbjct: 35 QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
+QA R ++ ++ L GLL+ K+ T H A+ + L A+ + V G +
Sbjct: 91 RQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
T G +FAL L +LF + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
+VAS G+ + A S +D D+I +PGG ++ + L +++Q R +
Sbjct: 46 VVASSGLVLQATTSFADCPP--LDVICIPGGTGVGALMEDPQALA-FIRQQAARARYVTS 102
Query: 388 VCSSPIVXXXXXXXX---XXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 444
V + +V ++ L V+ +VV DG ++T G+ IDF
Sbjct: 103 VSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVH-ERVVRDGNLLTGGGITAGIDF 161
Query: 445 ALAIVSKFFGHARTRSVAEGLVFEY 469
AL + ++ F A + V L EY
Sbjct: 162 ALTLAAELFDAATAQRVQ--LQLEY 184
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 113 QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKIT 172
QV + EP V ASSG L A TS ++C D+I +PGG + D + L I
Sbjct: 35 QVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALMEDPQALAFI- 90
Query: 173 SKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV--SGEV 230
+QA R ++ ++ L GLL+ K+ T H A+ + L A+ + V G +
Sbjct: 91 RQQAARARYVTSVXTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNL 149
Query: 231 TTSRGPGTSFEFALCLVEQLFGESVAKEI 259
T G +FAL L +LF + A+ +
Sbjct: 150 LTGGGITAGIDFALTLAAELFDAATAQRV 178
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
+VAS G+ + A S +D D+I +PGG ++ + L +++Q R +
Sbjct: 46 VVASSGLVLQATTSFADCPP--LDVICIPGGTGVGALMEDPQALA-FIRQQAARARYVTS 102
Query: 388 VCSSPIVXXXXXXXX---XXXXXXXPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDF 444
V + +V ++ L V+ +VV DG ++T G+ IDF
Sbjct: 103 VXTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVH-ERVVRDGNLLTGGGITAGIDF 161
Query: 445 ALAIVSKFFGHARTRSVAEGLVFEY 469
AL + ++ F A + V L EY
Sbjct: 162 ALTLAAELFDAATAQRVQ--LQLEY 184
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 4/167 (2%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAE 347
+V I I E+ E + + L++A +VVV + + +G + AD + ++A
Sbjct: 12 KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRXNEKYKGKRGRLSTQADGTTTEAIA 71
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXXXX 407
S +D +++PGG A ++ +++ + ++E G++ AV P V
Sbjct: 72 SEFDAVVIPGGXA-PDKXRRNPNTVRFVQEAXEQGKLVAAVXHGPQVLIEGDLLRGKQAT 130
Query: 408 XXPSVIGKLTNEVVN--GTKVVVDGKVITSRGLANVIDFALAIVSKF 452
++ N + +VVDG +ITSR ++ F AI+S+
Sbjct: 131 GFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRL 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 22/204 (10%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLV--ADTSISNC 142
KKV + + E+ E +I + L++AG +V + + + G RL AD + +
Sbjct: 11 KKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRXNEKYKGKRG-RLSTQADGTTTEA 69
Query: 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202
FD + +PGG R+ + + + E+ +L A+ P V L+ LLR K
Sbjct: 70 IASEFDAVVIPGGXAPDKXRRNPNTV-RFVQEAXEQGKLVAAVXHGPQV-LIEGDLLRGK 127
Query: 203 QITCHPAFTDKLPTFWA--VKSNIHVSGEVTTSRGPGTSFEFALCLVEQL-FGESVAKEI 259
Q T A + A + + V G + TSR PG F ++ +L +G
Sbjct: 128 QATGFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYG------- 180
Query: 260 GELLLMHNADNSLKKEEFNEVEWF 283
D +L E+ EW+
Sbjct: 181 -------GKDAALPDEKDRNAEWW 197
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES 348
+VL A+G E++E++ + ++ +V VAS +R +I G + D + +
Sbjct: 4 KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPD 62
Query: 349 VYDLIILPGGVAGA-ERLQKSRIL--KKLLKEQKVAGRIYGAVCSSPIVXXXXXXXXXXX 405
+D ++LPGG A RL + ++ +++ ++ K ++C P +
Sbjct: 63 EFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPV----ASICHGPQILISAKVLKGRR 118
Query: 406 XXXXPSVIGKLTN---EVVNGTKVVVDGKVITSR 436
++ + N E ++ +VVVDG ++SR
Sbjct: 119 GTSTITIRDDVINAGAEWID-AEVVVDGNWVSSR 151
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE----RSTQIVASQG-----VKIIAD 339
++ I A+G EEIE+ + RA ++ + E +I + +G K D
Sbjct: 11 KIAILAADGVEEIELTS-----PRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVD 65
Query: 340 KSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVXXXXX 399
+S+ S YD ++LPGG ++L+ K +++ AG+ A+ P
Sbjct: 66 HVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGPWSLSETG 125
Query: 400 XXXXXXXXXXPSVIGKLT---NEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKF 452
S+ +LT + V+ + V D V+TSR ++ F IV +F
Sbjct: 126 IAQGLKMTSWSSLKRELTLAGAQWVD-EECVTDKGVVTSRKPDDLPAFNKKIVEEF 180
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT-----RLVADTSI 139
KK+ + G EE+E + AG + S+EP E+++ G + D +
Sbjct: 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVV 68
Query: 140 SNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 198
S +D + LPGG +LR E K + +Y A A+ PW L
Sbjct: 69 SEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFV------RDMYDAGKPIAAIXHGPWSL 121
>pdb|3EFE|A Chain A, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|B Chain B, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|C Chain C, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|D Chain D, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|E Chain E, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
pdb|3EFE|F Chain F, The Crystal Structure Of The ThijPFPI FAMILY PROTEIN FROM
BACILLUS Anthracis
Length = 212
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 328 IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGA 387
I G++I D S+ + DL+ILPGG +E + + IL+++ + K+ G I A
Sbjct: 53 ITTMGGLRIKPDISLDECTLESKDLLILPGGTTWSEEIHQP-ILERIGQALKI-GTIVAA 110
Query: 388 VCSS 391
+C +
Sbjct: 111 ICGA 114
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Query: 118 SVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL-RDCEILKKITSKQA 176
S++P V + +G +V + C + L A PGG G++ D E L + A
Sbjct: 60 SLDP---VTSDAGLAIVPTATFGTCPRDLTVLFA-PGGTDGTLAAASDAETLAFXADRGA 115
Query: 177 EEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGP 236
K + ++C+ ++ L GLL+ + T H + D L F A+ + V + G
Sbjct: 116 RAKYIT-SVCSG-SLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGA 173
Query: 237 GTS--FEFALCLVEQLFGESVAKEIGELLLMHNAD 269
G + +F L V +L ++ A E +L ++ D
Sbjct: 174 GVTAGLDFGLSXVAELRDQTYA-ECAQLXSEYDPD 207
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQG-VKIIADKSISDAAE 347
++ + I + E+ E + D R+A +V+ + + +G + DKSI +
Sbjct: 25 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTP 84
Query: 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392
+ +D ++LPGG + + L+ ++ +G+ A+C P
Sbjct: 85 AEFDALLLPGGHS-PDYLRGDNRFVTFTRDFVNSGKPVFAICHGP 128
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVA-DTSISNCS 143
KK+ V + E+ E D R+AG +V + V+ G V D SI +
Sbjct: 24 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVT 83
Query: 144 HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203
FD + LPGG LR T + AIC P + L+ ++R ++
Sbjct: 84 PAEFDALLLPGGHSPDY-LRGDNRFVTFTRDFVNSGKPVFAICHGPQL-LISADVIRGRK 141
Query: 204 ITC 206
+T
Sbjct: 142 LTA 144
>pdb|3SSZ|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Rhodobacteraceae Bacterium
Length = 413
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 291 LIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIAD 339
++PI+ G E ++ D++ + V V+ R I A+Q + IA+
Sbjct: 282 IVPISGGEHEFSVIGCKDLIEKKAVSVLQYDTNRVGGITAAQKINAIAE 330
>pdb|3GRA|A Chain A, Crystal Structure Of Arac Family Transcriptional Regulator
From Pseudomonas Putida
pdb|3GRA|B Chain B, Crystal Structure Of Arac Family Transcriptional Regulator
From Pseudomonas Putida
Length = 202
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 99 EAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158
+ ++ ++LR Q T S++ V + G LVA T +S + + DL+ + GG+
Sbjct: 26 DVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVA-TELSAAALKELDLLVVCGGLRT 83
Query: 159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP----AFTDKL 214
++ + L ++ + A G + A L G+L + HP + +++
Sbjct: 84 PLKYPE---LDRLLNDCAAHGXALGGLWNG-AWFLGRAGVLDDYGCSIHPEQRASLSERS 139
Query: 215 PTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNA 268
P ++ + + ++ P + E L LV +L+G+ +A+ + E+L A
Sbjct: 140 PQTRITPASFTLDRDRLSAASPNGAXELXLGLVRRLYGDGLAEGVEEILSFSGA 193
>pdb|3M9W|A Chain A, Open Ligand-Free Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3M9X|A Chain A, Open Liganded Crystal Structure Of Xylose Binding Protein
From Escherichia Coli
pdb|3MA0|A Chain A, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|B Chain B, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|C Chain C, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
Length = 313
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 10/70 (14%)
Query: 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS-------QGVKIIA-DK 340
+V + ANG+EE ++ I +++ R VDV+V + + Q++++ +G+K++A D+
Sbjct: 34 KVFVQSANGNEETQMSQIENMINRG-VDVLVI-IPYNGQVLSNVVKEAKQEGIKVLAYDR 91
Query: 341 SISDAAESVY 350
I+DA Y
Sbjct: 92 MINDADIDFY 101
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 418 NEVVNGTKVVVDGKVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471
N+V+ G + DG V + N+ A+ SK FGH + +EG E P
Sbjct: 218 NKVIRGGNAIADGPVNET----NLEAAMHAVRSKGFGHEEEKDASEGFTKEDPN 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,917,461
Number of Sequences: 62578
Number of extensions: 393707
Number of successful extensions: 1139
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 90
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)