Query 012037
Match_columns 472
No_of_seqs 439 out of 3206
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2764 Putative transcription 100.0 5.3E-36 1.2E-40 270.3 15.9 241 84-359 5-247 (247)
2 TIGR01383 not_thiJ DJ-1 family 100.0 4.1E-34 8.8E-39 262.2 19.4 175 289-463 1-178 (179)
3 cd03137 GATase1_AraC_1 AraC tr 100.0 2.5E-33 5.3E-38 258.8 19.3 174 290-467 1-186 (187)
4 cd03136 GATase1_AraC_ArgR_like 100.0 2.2E-33 4.7E-38 258.8 18.4 174 290-468 1-185 (185)
5 cd03138 GATase1_AraC_2 AraC tr 100.0 3.1E-33 6.8E-38 259.9 18.2 176 290-468 1-195 (195)
6 cd03139 GATase1_PfpI_2 Type 1 100.0 3.1E-33 6.7E-38 257.2 16.8 175 290-468 1-183 (183)
7 COG4977 Transcriptional regula 100.0 7.2E-33 1.6E-37 270.4 18.7 183 286-472 9-202 (328)
8 TIGR01383 not_thiJ DJ-1 family 100.0 1.6E-32 3.4E-37 251.7 17.5 175 86-261 1-178 (179)
9 cd03135 GATase1_DJ-1 Type 1 gl 100.0 5.3E-32 1.1E-36 244.2 18.2 162 290-452 1-163 (163)
10 PRK11574 oxidative-stress-resi 100.0 2.1E-31 4.5E-36 247.9 21.0 184 286-469 1-189 (196)
11 PRK09393 ftrA transcriptional 100.0 4.4E-31 9.5E-36 264.4 21.1 181 286-471 8-200 (322)
12 cd03139 GATase1_PfpI_2 Type 1 100.0 6.4E-32 1.4E-36 248.4 13.4 175 87-266 1-183 (183)
13 cd03136 GATase1_AraC_ArgR_like 100.0 2E-31 4.3E-36 245.7 15.0 174 87-266 1-185 (185)
14 TIGR01382 PfpI intracellular p 100.0 1.1E-30 2.3E-35 236.5 17.5 162 289-452 1-165 (166)
15 cd03137 GATase1_AraC_1 AraC tr 100.0 4.3E-31 9.4E-36 243.8 15.1 174 87-265 1-186 (187)
16 cd03138 GATase1_AraC_2 AraC tr 100.0 6.8E-31 1.5E-35 244.2 15.5 176 87-266 1-195 (195)
17 COG4977 Transcriptional regula 100.0 1.5E-30 3.3E-35 254.1 18.4 213 82-312 8-231 (328)
18 PRK11574 oxidative-stress-resi 100.0 3.5E-30 7.7E-35 239.6 19.8 185 84-268 2-190 (196)
19 cd03134 GATase1_PfpI_like A ty 100.0 1.7E-30 3.7E-35 235.0 16.8 160 289-450 1-164 (165)
20 PF13278 DUF4066: Putative ami 100.0 1.8E-30 4E-35 235.1 16.5 154 293-450 1-166 (166)
21 cd03135 GATase1_DJ-1 Type 1 gl 100.0 2.6E-30 5.7E-35 233.1 17.1 162 87-250 1-163 (163)
22 TIGR01382 PfpI intracellular p 100.0 9.1E-30 2E-34 230.5 15.7 162 86-250 1-165 (166)
23 cd03140 GATase1_PfpI_3 Type 1 100.0 1.9E-29 4.2E-34 229.2 16.5 159 290-452 1-166 (170)
24 cd03134 GATase1_PfpI_like A ty 100.0 1.5E-29 3.2E-34 228.9 14.6 160 86-248 1-164 (165)
25 KOG2764 Putative transcription 100.0 2.2E-29 4.7E-34 227.6 13.2 183 287-469 5-190 (247)
26 cd03169 GATase1_PfpI_1 Type 1 100.0 8.7E-29 1.9E-33 227.1 17.4 163 289-452 1-180 (180)
27 PRK09393 ftrA transcriptional 100.0 7E-29 1.5E-33 248.5 17.8 185 79-269 4-200 (322)
28 cd03169 GATase1_PfpI_1 Type 1 100.0 3.9E-28 8.4E-33 222.8 15.8 163 86-250 1-180 (180)
29 PF13278 DUF4066: Putative ami 100.0 2.2E-28 4.8E-33 221.4 13.5 154 90-248 1-166 (166)
30 cd03140 GATase1_PfpI_3 Type 1 100.0 1.7E-27 3.7E-32 216.4 15.2 159 87-250 1-166 (170)
31 cd03147 GATase1_Ydr533c_like T 99.9 8.8E-26 1.9E-30 213.8 13.2 157 296-452 20-231 (231)
32 cd03141 GATase1_Hsp31_like Typ 99.9 1.1E-25 2.3E-30 212.8 13.6 156 296-452 18-221 (221)
33 cd03147 GATase1_Ydr533c_like T 99.9 2.8E-25 6E-30 210.4 11.5 157 93-250 20-231 (231)
34 COG0693 ThiJ Putative intracel 99.9 2.1E-24 4.6E-29 199.4 16.3 170 287-456 2-186 (188)
35 PRK04155 chaperone protein Hch 99.9 3.4E-24 7.3E-29 208.2 17.8 167 286-453 48-282 (287)
36 cd03141 GATase1_Hsp31_like Typ 99.9 1.2E-24 2.7E-29 205.6 11.7 157 92-250 17-221 (221)
37 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 7.3E-24 1.6E-28 187.9 14.1 137 316-452 1-146 (147)
38 COG0693 ThiJ Putative intracel 99.9 1.5E-23 3.3E-28 193.7 16.7 170 84-254 2-186 (188)
39 cd03148 GATase1_EcHsp31_like T 99.9 6.9E-24 1.5E-28 201.0 14.6 159 294-453 19-232 (232)
40 PRK04155 chaperone protein Hch 99.9 6E-24 1.3E-28 206.5 14.6 167 84-252 49-283 (287)
41 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 6.1E-24 1.3E-28 188.4 9.8 137 113-250 1-146 (147)
42 cd03148 GATase1_EcHsp31_like T 99.9 2.7E-23 5.8E-28 196.9 12.0 159 90-250 18-231 (232)
43 PRK11780 isoprenoid biosynthes 99.9 7.1E-22 1.5E-26 185.1 15.4 151 287-438 1-192 (217)
44 PRK11780 isoprenoid biosynthes 99.9 6.3E-22 1.4E-26 185.4 13.3 153 84-238 1-194 (217)
45 cd03132 GATase1_catalase Type 99.9 1.1E-20 2.5E-25 166.4 16.0 113 288-401 2-114 (142)
46 cd03133 GATase1_ES1 Type 1 glu 99.9 6.8E-21 1.5E-25 177.3 14.9 152 295-447 11-201 (213)
47 cd03133 GATase1_ES1 Type 1 glu 99.9 4.2E-21 9.1E-26 178.7 12.0 145 92-238 11-191 (213)
48 cd03132 GATase1_catalase Type 99.8 3.3E-20 7.3E-25 163.4 15.1 139 84-251 1-139 (142)
49 PRK11249 katE hydroperoxidase 99.8 1.7E-18 3.7E-23 185.4 18.1 135 52-200 577-711 (752)
50 PRK11249 katE hydroperoxidase 99.6 6.4E-15 1.4E-19 158.1 15.8 116 286-402 596-711 (752)
51 PRK03619 phosphoribosylformylg 99.1 5.1E-10 1.1E-14 105.6 12.3 95 288-405 1-102 (219)
52 cd01740 GATase1_FGAR_AT Type 1 99.1 3.2E-10 7E-15 108.4 10.8 128 290-436 1-136 (238)
53 cd01740 GATase1_FGAR_AT Type 1 99.1 9.1E-10 2E-14 105.3 11.3 128 87-234 1-136 (238)
54 PRK01175 phosphoribosylformylg 99.0 1.7E-09 3.7E-14 104.3 11.3 99 287-403 3-110 (261)
55 PRK03619 phosphoribosylformylg 98.9 6.3E-09 1.4E-13 98.2 11.6 95 85-203 1-102 (219)
56 PRK01175 phosphoribosylformylg 98.9 7.9E-09 1.7E-13 99.6 11.0 101 84-202 3-111 (261)
57 TIGR01737 FGAM_synth_I phospho 98.9 2.5E-08 5.4E-13 94.7 12.6 94 288-404 1-100 (227)
58 cd01653 GATase1 Type 1 glutami 98.8 5.5E-08 1.2E-12 79.7 10.6 92 290-395 1-92 (115)
59 COG3155 ElbB Uncharacterized p 98.8 6.6E-08 1.4E-12 83.4 10.0 163 84-253 1-205 (217)
60 TIGR01737 FGAM_synth_I phospho 98.7 2.4E-07 5.3E-12 88.0 12.0 94 85-202 1-100 (227)
61 cd01653 GATase1 Type 1 glutami 98.6 3.4E-07 7.5E-12 74.9 10.4 92 87-193 1-92 (115)
62 COG0047 PurL Phosphoribosylfor 98.5 1.1E-06 2.3E-11 81.1 11.3 95 287-403 2-102 (231)
63 COG0047 PurL Phosphoribosylfor 98.5 7.5E-07 1.6E-11 82.1 9.8 96 84-201 2-102 (231)
64 PRK13527 glutamine amidotransf 98.5 9E-07 2E-11 82.5 9.9 92 288-398 1-93 (200)
65 cd03128 GAT_1 Type 1 glutamine 98.4 6.4E-07 1.4E-11 69.9 6.7 92 290-395 1-92 (92)
66 cd03128 GAT_1 Type 1 glutamine 98.4 1.8E-06 3.9E-11 67.3 8.0 89 87-189 1-89 (92)
67 PRK13527 glutamine amidotransf 98.4 1.5E-06 3.3E-11 81.0 8.5 92 85-196 1-93 (200)
68 PRK13526 glutamine amidotransf 98.4 1.2E-06 2.6E-11 79.2 7.5 89 288-403 3-97 (179)
69 COG3155 ElbB Uncharacterized p 98.3 1.6E-06 3.5E-11 74.9 6.7 163 287-454 1-204 (217)
70 TIGR03800 PLP_synth_Pdx2 pyrid 98.3 2.3E-06 5E-11 78.5 7.8 85 289-398 1-86 (184)
71 PRK13526 glutamine amidotransf 98.2 2.5E-06 5.5E-11 77.1 6.6 83 85-195 3-87 (179)
72 TIGR03800 PLP_synth_Pdx2 pyrid 98.2 3.7E-06 8.1E-11 77.1 6.7 85 86-196 1-86 (184)
73 PF13507 GATase_5: CobB/CobQ-l 98.1 9.1E-06 2E-10 78.3 8.2 98 288-403 2-111 (259)
74 cd03130 GATase1_CobB Type 1 gl 98.1 1.1E-05 2.4E-10 75.0 7.9 77 304-399 14-92 (198)
75 PRK07053 glutamine amidotransf 98.0 4.1E-05 8.8E-10 73.0 11.0 96 286-398 1-99 (234)
76 PRK13143 hisH imidazole glycer 98.0 2.7E-05 5.8E-10 72.6 9.2 87 288-398 1-87 (200)
77 PRK08250 glutamine amidotransf 98.0 4.9E-05 1.1E-09 72.6 10.9 94 288-398 1-100 (235)
78 PRK13525 glutamine amidotransf 98.0 2.8E-05 6.2E-10 71.7 8.9 87 287-398 1-88 (189)
79 PF13507 GATase_5: CobB/CobQ-l 98.0 2.9E-05 6.3E-10 74.8 8.9 100 85-202 2-112 (259)
80 cd03130 GATase1_CobB Type 1 gl 97.9 4.6E-05 9.9E-10 70.9 7.7 78 100-197 13-92 (198)
81 PRK08250 glutamine amidotransf 97.8 0.00011 2.4E-09 70.2 10.1 94 85-196 1-100 (235)
82 PRK13525 glutamine amidotransf 97.8 6.2E-05 1.3E-09 69.5 7.9 87 84-196 1-88 (189)
83 PLN02832 glutamine amidotransf 97.8 7.6E-05 1.6E-09 71.2 7.9 87 287-398 1-88 (248)
84 PRK01077 cobyrinic acid a,c-di 97.7 0.00015 3.3E-09 76.0 10.0 92 287-398 245-338 (451)
85 cd01741 GATase1_1 Subgroup of 97.7 0.00019 4.1E-09 66.1 9.4 92 289-398 1-97 (188)
86 cd01750 GATase1_CobQ Type 1 gl 97.7 0.00013 2.8E-09 67.6 8.2 86 290-399 1-89 (194)
87 PRK13143 hisH imidazole glycer 97.7 0.00012 2.5E-09 68.3 7.4 87 85-196 1-87 (200)
88 PLN02832 glutamine amidotransf 97.6 0.00016 3.5E-09 69.0 7.1 87 84-196 1-88 (248)
89 PRK07053 glutamine amidotransf 97.6 0.00072 1.6E-08 64.5 11.5 95 84-196 2-99 (234)
90 PRK06490 glutamine amidotransf 97.6 0.00067 1.4E-08 64.9 10.9 96 286-398 6-102 (239)
91 cd01749 GATase1_PB Glutamine A 97.5 0.00024 5.3E-09 65.1 7.3 85 290-399 1-86 (183)
92 PRK13141 hisH imidazole glycer 97.5 0.00026 5.5E-09 66.2 7.5 85 290-398 2-88 (205)
93 CHL00188 hisH imidazole glycer 97.5 0.00036 7.7E-09 65.4 8.1 95 287-406 1-107 (210)
94 PRK01077 cobyrinic acid a,c-di 97.5 0.00039 8.4E-09 73.0 9.1 91 85-196 246-338 (451)
95 COG0311 PDX2 Predicted glutami 97.5 0.00027 5.9E-09 63.2 6.2 86 288-398 1-88 (194)
96 cd01750 GATase1_CobQ Type 1 gl 97.5 0.00034 7.3E-09 64.9 7.2 87 87-197 1-89 (194)
97 cd01741 GATase1_1 Subgroup of 97.4 0.00073 1.6E-08 62.2 9.4 92 86-196 1-97 (188)
98 TIGR01857 FGAM-synthase phosph 97.4 0.0011 2.3E-08 76.4 12.3 107 286-403 976-1095(1239)
99 cd01749 GATase1_PB Glutamine A 97.4 0.00036 7.8E-09 64.0 6.1 84 87-196 1-85 (183)
100 PRK13146 hisH imidazole glycer 97.3 0.00096 2.1E-08 62.5 8.7 88 287-399 1-94 (209)
101 cd01744 GATase1_CPSase Small c 97.3 0.0012 2.5E-08 60.4 8.6 75 305-398 11-85 (178)
102 PRK06895 putative anthranilate 97.3 0.0013 2.7E-08 60.8 8.9 87 288-398 2-88 (190)
103 TIGR01857 FGAM-synthase phosph 97.3 0.0015 3.2E-08 75.2 10.9 110 82-202 975-1096(1239)
104 PLN03206 phosphoribosylformylg 97.2 0.0023 5E-08 74.2 12.0 101 286-404 1036-1148(1307)
105 TIGR01735 FGAM_synt phosphorib 97.2 0.0021 4.6E-08 74.9 11.3 101 286-404 1054-1167(1310)
106 PRK06490 glutamine amidotransf 97.1 0.0038 8.2E-08 59.8 10.8 97 82-196 5-102 (239)
107 PRK05665 amidotransferase; Pro 97.1 0.0054 1.2E-07 58.7 11.8 51 348-398 56-107 (240)
108 PRK05297 phosphoribosylformylg 97.1 0.0033 7.2E-08 73.5 12.0 100 286-403 1034-1146(1290)
109 PRK13141 hisH imidazole glycer 97.1 0.00095 2.1E-08 62.4 6.2 85 87-196 2-88 (205)
110 CHL00188 hisH imidazole glycer 97.1 0.0013 2.9E-08 61.6 7.0 86 84-196 1-90 (210)
111 PRK05665 amidotransferase; Pro 97.1 0.0058 1.3E-07 58.5 11.1 50 146-196 57-107 (240)
112 PF07685 GATase_3: CobB/CobQ-l 97.0 0.0008 1.7E-08 60.2 4.8 52 347-398 5-58 (158)
113 TIGR00379 cobB cobyrinic acid 97.0 0.0024 5.2E-08 67.0 8.9 91 288-398 245-337 (449)
114 PRK09065 glutamine amidotransf 97.0 0.0037 8E-08 59.8 9.4 96 287-398 1-104 (237)
115 PLN03206 phosphoribosylformylg 96.9 0.0051 1.1E-07 71.4 11.3 103 82-202 1035-1148(1307)
116 PRK09065 glutamine amidotransf 96.9 0.0069 1.5E-07 57.9 10.2 96 84-196 1-104 (237)
117 PRK06895 putative anthranilate 96.9 0.0033 7.2E-08 58.0 7.7 87 85-196 2-88 (190)
118 PRK07567 glutamine amidotransf 96.9 0.0053 1.1E-07 58.9 9.0 97 287-398 1-109 (242)
119 COG0311 PDX2 Predicted glutami 96.8 0.0022 4.8E-08 57.5 5.6 85 85-195 1-87 (194)
120 PHA03366 FGAM-synthase; Provis 96.8 0.0089 1.9E-07 69.9 12.1 98 286-402 1027-1137(1304)
121 PRK13146 hisH imidazole glycer 96.8 0.0034 7.3E-08 58.9 7.1 90 84-198 1-95 (209)
122 PRK13181 hisH imidazole glycer 96.8 0.0063 1.4E-07 56.6 8.7 85 290-398 2-88 (199)
123 COG1797 CobB Cobyrinic acid a, 96.8 0.011 2.4E-07 60.2 10.8 144 229-398 190-339 (451)
124 cd01748 GATase1_IGP_Synthase T 96.8 0.0019 4.2E-08 59.9 5.0 75 303-398 11-87 (198)
125 TIGR01739 tegu_FGAM_synt herpe 96.8 0.01 2.2E-07 69.1 11.9 98 286-402 928-1038(1202)
126 PF01174 SNO: SNO glutamine am 96.7 0.0014 3.1E-08 59.3 3.8 55 341-397 27-83 (188)
127 TIGR01735 FGAM_synt phosphorib 96.7 0.0058 1.3E-07 71.4 9.5 102 83-202 1054-1167(1310)
128 cd01748 GATase1_IGP_Synthase T 96.7 0.0033 7.2E-08 58.3 6.0 74 100-196 11-87 (198)
129 PRK07765 para-aminobenzoate sy 96.7 0.012 2.6E-07 55.4 9.7 78 305-398 15-92 (214)
130 cd01744 GATase1_CPSase Small c 96.7 0.0059 1.3E-07 55.7 7.4 74 102-195 11-84 (178)
131 COG1797 CobB Cobyrinic acid a, 96.6 0.012 2.5E-07 60.0 9.6 92 85-196 246-339 (451)
132 TIGR00888 guaA_Nterm GMP synth 96.6 0.0077 1.7E-07 55.4 7.6 77 302-398 10-86 (188)
133 PRK00784 cobyric acid synthase 96.5 0.0058 1.3E-07 64.8 7.3 86 288-398 252-341 (488)
134 PF00117 GATase: Glutamine ami 96.5 0.007 1.5E-07 55.7 6.7 79 303-398 10-88 (192)
135 COG0518 GuaA GMP synthase - Gl 96.5 0.026 5.6E-07 52.3 10.4 77 305-398 16-95 (198)
136 PRK06774 para-aminobenzoate sy 96.4 0.013 2.9E-07 54.0 8.4 75 305-398 14-88 (191)
137 PRK13170 hisH imidazole glycer 96.4 0.013 2.8E-07 54.3 8.3 83 288-398 1-86 (196)
138 TIGR00379 cobB cobyrinic acid 96.4 0.01 2.2E-07 62.2 8.4 91 85-196 245-337 (449)
139 PF09825 BPL_N: Biotin-protein 96.4 0.015 3.3E-07 58.8 9.0 93 288-396 1-96 (367)
140 cd03144 GATase1_ScBLP_like Typ 96.4 0.0076 1.6E-07 50.5 5.7 88 289-395 1-90 (114)
141 PF07685 GATase_3: CobB/CobQ-l 96.4 0.0032 6.9E-08 56.3 3.7 52 144-196 5-58 (158)
142 PHA03366 FGAM-synthase; Provis 96.4 0.018 3.9E-07 67.5 10.5 100 82-200 1026-1137(1304)
143 TIGR00566 trpG_papA glutamine 96.4 0.015 3.2E-07 53.6 8.1 75 305-398 14-88 (188)
144 PRK08007 para-aminobenzoate sy 96.3 0.012 2.7E-07 54.1 7.3 87 292-398 2-88 (187)
145 TIGR01855 IMP_synth_hisH imida 96.3 0.0099 2.1E-07 55.1 6.8 75 302-398 10-87 (196)
146 PRK05297 phosphoribosylformylg 96.3 0.018 4E-07 67.5 10.1 101 83-201 1034-1146(1290)
147 COG0118 HisH Glutamine amidotr 96.3 0.013 2.7E-07 53.7 6.9 88 84-197 1-91 (204)
148 cd03146 GAT1_Peptidase_E Type 96.2 0.018 3.8E-07 54.2 8.1 97 286-398 30-130 (212)
149 cd01743 GATase1_Anthranilate_S 96.2 0.016 3.4E-07 53.1 7.5 75 305-398 13-87 (184)
150 PRK07567 glutamine amidotransf 96.2 0.02 4.3E-07 55.0 8.4 97 84-196 1-109 (242)
151 cd01745 GATase1_2 Subgroup of 96.2 0.015 3.2E-07 53.7 7.0 81 304-398 22-116 (189)
152 COG0118 HisH Glutamine amidotr 96.2 0.02 4.4E-07 52.3 7.7 88 287-399 1-91 (204)
153 TIGR01739 tegu_FGAM_synt herpe 96.2 0.028 6.1E-07 65.5 10.7 99 84-201 929-1039(1202)
154 PRK12564 carbamoyl phosphate s 96.1 0.021 4.5E-07 57.9 8.5 88 287-398 177-264 (360)
155 PLN02617 imidazole glycerol ph 96.1 0.037 7.9E-07 59.1 10.7 89 286-398 5-95 (538)
156 PRK13170 hisH imidazole glycer 96.1 0.013 2.8E-07 54.3 6.4 83 85-196 1-86 (196)
157 PLN02335 anthranilate synthase 96.1 0.025 5.4E-07 53.5 8.4 91 286-398 17-107 (222)
158 PRK05637 anthranilate synthase 96.1 0.041 8.8E-07 51.5 9.6 89 287-398 1-89 (208)
159 cd03144 GATase1_ScBLP_like Typ 96.0 0.014 3.1E-07 48.8 5.6 88 86-194 1-90 (114)
160 PRK05670 anthranilate synthase 96.0 0.022 4.8E-07 52.4 7.2 80 300-398 9-88 (189)
161 cd01742 GATase1_GMP_Synthase T 95.9 0.03 6.4E-07 51.0 7.9 75 304-398 12-86 (181)
162 PRK06278 cobyrinic acid a,c-di 95.9 0.02 4.2E-07 60.2 7.4 46 348-398 35-81 (476)
163 PRK13181 hisH imidazole glycer 95.9 0.022 4.7E-07 52.9 6.8 74 101-196 13-88 (199)
164 PLN02617 imidazole glycerol ph 95.9 0.038 8.2E-07 59.0 9.3 88 83-196 5-95 (538)
165 PRK00784 cobyric acid synthase 95.9 0.018 3.9E-07 61.1 6.9 88 84-196 251-341 (488)
166 PRK13566 anthranilate synthase 95.8 0.062 1.3E-06 59.4 11.1 92 284-398 523-614 (720)
167 COG0518 GuaA GMP synthase - Gl 95.8 0.091 2E-06 48.7 10.5 92 85-196 2-95 (198)
168 PRK08857 para-aminobenzoate sy 95.8 0.033 7.1E-07 51.5 7.6 85 294-398 4-88 (193)
169 PRK07765 para-aminobenzoate sy 95.8 0.034 7.3E-07 52.3 7.7 79 101-196 14-92 (214)
170 PRK05380 pyrG CTP synthetase; 95.8 0.063 1.4E-06 56.6 10.2 149 227-396 231-386 (533)
171 TIGR01855 IMP_synth_hisH imida 95.7 0.016 3.5E-07 53.7 5.3 75 99-196 10-87 (196)
172 PRK00758 GMP synthase subunit 95.7 0.034 7.4E-07 50.9 7.3 68 306-398 15-83 (184)
173 PRK05282 (alpha)-aspartyl dipe 95.7 0.051 1.1E-06 51.7 8.6 95 286-399 30-130 (233)
174 PRK07649 para-aminobenzoate/an 95.7 0.047 1E-06 50.6 8.2 75 305-398 14-88 (195)
175 PRK13896 cobyrinic acid a,c-di 95.7 0.022 4.9E-07 59.1 6.7 89 288-398 234-324 (433)
176 PF09825 BPL_N: Biotin-protein 95.6 0.051 1.1E-06 55.0 8.6 89 85-189 1-92 (367)
177 PRK08007 para-aminobenzoate sy 95.5 0.033 7.2E-07 51.2 6.5 87 89-196 2-88 (187)
178 PF01174 SNO: SNO glutamine am 95.5 0.012 2.7E-07 53.3 3.5 49 146-195 33-83 (188)
179 PRK13142 hisH imidazole glycer 95.5 0.066 1.4E-06 49.3 8.2 84 290-399 2-87 (192)
180 TIGR00888 guaA_Nterm GMP synth 95.5 0.043 9.2E-07 50.4 7.0 76 100-196 11-86 (188)
181 KOG3210 Imidazoleglycerol-phos 95.5 0.042 9.2E-07 48.3 6.4 96 286-398 10-107 (226)
182 CHL00101 trpG anthranilate syn 95.5 0.046 1E-06 50.4 7.2 76 304-398 13-88 (190)
183 CHL00197 carA carbamoyl-phosph 95.4 0.1 2.3E-06 53.2 9.9 88 287-398 192-279 (382)
184 TIGR01815 TrpE-clade3 anthrani 95.3 0.097 2.1E-06 57.8 10.1 91 285-398 514-604 (717)
185 cd03146 GAT1_Peptidase_E Type 95.3 0.061 1.3E-06 50.5 7.5 97 83-196 30-130 (212)
186 PRK06774 para-aminobenzoate sy 95.3 0.044 9.6E-07 50.5 6.4 87 89-196 2-88 (191)
187 PRK14004 hisH imidazole glycer 95.2 0.028 6E-07 52.7 5.0 84 290-398 2-88 (210)
188 cd01742 GATase1_GMP_Synthase T 95.2 0.066 1.4E-06 48.7 7.3 75 101-196 12-86 (181)
189 TIGR01368 CPSaseIIsmall carbam 95.2 0.095 2.1E-06 53.1 9.0 86 288-398 174-259 (358)
190 PRK08857 para-aminobenzoate sy 95.0 0.061 1.3E-06 49.7 6.7 87 89-196 2-88 (193)
191 PRK12838 carbamoyl phosphate s 95.0 0.11 2.4E-06 52.5 8.9 87 287-398 167-253 (354)
192 PRK12564 carbamoyl phosphate s 94.9 0.12 2.6E-06 52.4 8.8 88 84-196 177-264 (360)
193 TIGR00313 cobQ cobyric acid sy 94.9 0.052 1.1E-06 57.4 6.4 84 288-397 248-334 (475)
194 PRK05670 anthranilate synthase 94.9 0.086 1.9E-06 48.5 7.1 87 89-196 2-88 (189)
195 TIGR00566 trpG_papA glutamine 94.8 0.092 2E-06 48.3 7.1 87 89-196 2-88 (188)
196 cd01743 GATase1_Anthranilate_S 94.7 0.12 2.5E-06 47.3 7.6 76 101-196 12-87 (184)
197 PRK13152 hisH imidazole glycer 94.7 0.078 1.7E-06 49.3 6.4 74 100-196 12-89 (201)
198 KOG3210 Imidazoleglycerol-phos 94.5 0.1 2.2E-06 46.0 6.1 101 82-201 9-111 (226)
199 PLN02327 CTP synthase 94.5 0.22 4.7E-06 52.8 9.8 156 227-396 238-405 (557)
200 PRK13896 cobyrinic acid a,c-di 94.4 0.13 2.9E-06 53.4 7.9 89 85-196 234-324 (433)
201 PRK07649 para-aminobenzoate/an 94.4 0.091 2E-06 48.6 6.1 87 89-196 2-88 (195)
202 TIGR01815 TrpE-clade3 anthrani 94.3 0.28 6E-06 54.3 10.5 90 83-196 515-604 (717)
203 TIGR00337 PyrG CTP synthase. C 94.3 0.35 7.7E-06 51.1 10.8 149 227-396 232-386 (525)
204 PRK05282 (alpha)-aspartyl dipe 94.3 0.15 3.2E-06 48.6 7.2 96 83-196 30-129 (233)
205 PRK13566 anthranilate synthase 94.2 0.36 7.8E-06 53.5 11.2 91 82-196 524-614 (720)
206 PRK13142 hisH imidazole glycer 94.2 0.1 2.2E-06 48.1 5.8 83 87-197 2-87 (192)
207 PRK00758 GMP synthase subunit 94.2 0.12 2.6E-06 47.3 6.3 68 103-196 15-83 (184)
208 cd01745 GATase1_2 Subgroup of 94.1 0.072 1.6E-06 49.0 4.7 81 101-196 22-116 (189)
209 PRK13152 hisH imidazole glycer 94.1 0.12 2.7E-06 48.0 6.3 85 290-398 2-89 (201)
210 PRK06278 cobyrinic acid a,c-di 94.0 0.11 2.3E-06 54.8 6.3 44 146-196 36-81 (476)
211 PRK06186 hypothetical protein; 94.0 0.3 6.5E-06 46.2 8.7 88 289-394 3-94 (229)
212 PLN02335 anthranilate synthase 93.9 0.21 4.6E-06 47.2 7.6 90 84-196 18-107 (222)
213 PRK09522 bifunctional glutamin 93.9 0.3 6.5E-06 52.3 9.6 92 288-398 2-93 (531)
214 cd01746 GATase1_CTP_Synthase T 93.9 0.45 9.7E-06 45.4 9.9 45 348-396 54-98 (235)
215 CHL00101 trpG anthranilate syn 93.9 0.15 3.4E-06 46.9 6.5 87 89-196 2-88 (190)
216 PF00117 GATase: Glutamine ami 93.8 0.1 2.2E-06 48.0 5.1 79 100-196 10-88 (192)
217 PRK05637 anthranilate synthase 93.7 0.3 6.5E-06 45.7 8.2 89 84-196 1-89 (208)
218 COG0512 PabA Anthranilate/para 93.6 0.5 1.1E-05 43.1 9.1 89 288-398 2-90 (191)
219 PLN02347 GMP synthetase 93.5 0.52 1.1E-05 50.5 10.4 91 288-398 11-102 (536)
220 PRK14004 hisH imidazole glycer 93.4 0.078 1.7E-06 49.7 3.6 84 87-196 2-88 (210)
221 CHL00197 carA carbamoyl-phosph 93.2 0.43 9.4E-06 48.7 8.9 88 84-196 192-279 (382)
222 COG0504 PyrG CTP synthase (UTP 92.9 1.8 3.9E-05 45.0 12.8 222 147-395 133-385 (533)
223 PLN02771 carbamoyl-phosphate s 92.5 0.42 9.1E-06 49.2 7.7 76 303-398 251-326 (415)
224 PRK11366 puuD gamma-glutamyl-g 92.5 0.19 4.2E-06 48.5 5.0 51 348-398 60-123 (254)
225 TIGR01368 CPSaseIIsmall carbam 92.4 0.46 1E-05 48.2 7.8 86 85-196 174-259 (358)
226 cd01747 GATase1_Glutamyl_Hydro 91.9 0.6 1.3E-05 45.6 7.7 79 305-397 24-107 (273)
227 cd03145 GAT1_cyanophycinase Ty 91.9 1.8 4E-05 40.7 10.8 102 286-398 28-133 (217)
228 PRK06186 hypothetical protein; 91.8 1.2 2.6E-05 42.2 9.3 86 86-190 3-93 (229)
229 PRK05380 pyrG CTP synthetase; 91.8 0.88 1.9E-05 48.2 9.2 92 84-190 288-383 (533)
230 PRK14607 bifunctional glutamin 91.6 0.64 1.4E-05 50.0 8.3 86 293-398 3-89 (534)
231 PRK12838 carbamoyl phosphate s 91.6 0.43 9.4E-06 48.3 6.5 87 84-196 167-253 (354)
232 PRK00074 guaA GMP synthase; Re 90.6 0.66 1.4E-05 49.6 7.1 89 287-398 3-91 (511)
233 cd01746 GATase1_CTP_Synthase T 90.3 0.42 9.1E-06 45.6 4.8 43 146-192 55-97 (235)
234 PF03575 Peptidase_S51: Peptid 90.3 0.18 3.8E-06 44.7 2.1 82 305-399 4-86 (154)
235 TIGR01823 PabB-fungal aminodeo 89.8 1.7 3.8E-05 48.5 9.8 47 348-398 52-102 (742)
236 TIGR00313 cobQ cobyric acid sy 89.7 0.27 5.9E-06 52.0 3.3 50 146-196 284-335 (475)
237 PRK11366 puuD gamma-glutamyl-g 89.7 0.52 1.1E-05 45.6 4.9 50 146-196 61-123 (254)
238 cd03129 GAT1_Peptidase_E_like 89.2 2.1 4.6E-05 39.9 8.6 100 286-398 28-130 (210)
239 COG0512 PabA Anthranilate/para 89.1 1.4 3.1E-05 40.1 7.0 86 89-195 4-89 (191)
240 PRK05368 homoserine O-succinyl 88.8 2 4.4E-05 42.4 8.4 112 80-193 31-149 (302)
241 KOG3179 Predicted glutamine sy 88.7 3.5 7.6E-05 37.9 9.0 96 287-398 4-109 (245)
242 PLN02347 GMP synthetase 88.6 3.5 7.6E-05 44.3 10.7 91 85-196 11-102 (536)
243 PRK09522 bifunctional glutamin 88.1 1.5 3.3E-05 47.0 7.6 90 89-196 4-93 (531)
244 PF13587 DJ-1_PfpI_N: N-termin 88.0 0.99 2.2E-05 29.9 3.9 27 85-111 1-38 (38)
245 TIGR02069 cyanophycinase cyano 87.9 2.4 5.2E-05 40.8 8.2 101 286-396 27-130 (250)
246 COG3340 PepE Peptidase E [Amin 87.6 1.3 2.9E-05 41.0 5.8 96 287-399 32-135 (224)
247 COG3442 Predicted glutamine am 87.5 0.76 1.7E-05 42.6 4.1 50 348-397 51-102 (250)
248 COG3442 Predicted glutamine am 87.5 1.2 2.6E-05 41.3 5.4 50 145-195 51-102 (250)
249 PRK14607 bifunctional glutamin 86.9 1.4 3.1E-05 47.3 6.6 87 89-196 2-89 (534)
250 COG0505 CarA Carbamoylphosphat 86.7 1 2.2E-05 44.9 4.9 75 305-398 192-266 (368)
251 COG2071 Predicted glutamine am 86.6 1.2 2.7E-05 42.0 5.2 50 348-397 59-122 (243)
252 TIGR00337 PyrG CTP synthase. C 86.2 4.2 9.1E-05 43.2 9.4 92 84-191 289-384 (525)
253 PRK05368 homoserine O-succinyl 86.1 1.6 3.4E-05 43.2 5.9 105 286-397 34-150 (302)
254 PRK00074 guaA GMP synthase; Re 85.7 3.5 7.6E-05 44.1 8.7 88 84-195 3-90 (511)
255 PLN02327 CTP synthase 85.6 3.8 8.3E-05 43.7 8.7 101 84-192 297-404 (557)
256 COG4285 Uncharacterized conser 85.3 4.8 0.0001 37.4 8.1 91 85-191 1-94 (253)
257 COG4285 Uncharacterized conser 85.3 4.9 0.00011 37.3 8.1 91 288-394 1-94 (253)
258 PLN02771 carbamoyl-phosphate s 85.0 2.4 5.2E-05 43.7 6.7 76 100-196 251-326 (415)
259 cd03129 GAT1_Peptidase_E_like 84.9 2.9 6.3E-05 39.0 6.9 100 83-196 28-130 (210)
260 PF13587 DJ-1_PfpI_N: N-termin 84.6 1.8 4E-05 28.6 3.8 19 296-314 20-38 (38)
261 cd01747 GATase1_Glutamyl_Hydro 82.6 2.1 4.6E-05 41.8 5.1 79 102-195 24-107 (273)
262 PF03575 Peptidase_S51: Peptid 82.6 0.63 1.4E-05 41.2 1.3 82 101-196 3-85 (154)
263 KOG2387 CTP synthase (UTP-ammo 82.3 7.1 0.00015 40.1 8.5 102 285-394 296-404 (585)
264 TIGR02069 cyanophycinase cyano 82.0 4 8.8E-05 39.3 6.7 100 85-195 29-131 (250)
265 PRK02645 ppnK inorganic polyph 80.8 11 0.00023 37.5 9.4 89 83-190 2-92 (305)
266 COG2071 Predicted glutamine am 79.1 3.4 7.4E-05 39.1 4.9 45 145-190 59-118 (243)
267 COG0504 PyrG CTP synthase (UTP 78.9 14 0.00031 38.6 9.6 91 85-190 289-383 (533)
268 KOG0623 Glutamine amidotransfe 78.8 3.8 8.3E-05 40.4 5.3 74 303-397 14-89 (541)
269 KOG0370 Multifunctional pyrimi 78.4 5.4 0.00012 44.7 6.7 48 348-398 209-256 (1435)
270 cd03145 GAT1_cyanophycinase Ty 78.1 5.4 0.00012 37.4 6.1 101 84-195 29-132 (217)
271 PF07722 Peptidase_C26: Peptid 77.8 2 4.3E-05 40.4 3.0 50 348-397 57-121 (217)
272 COG1492 CobQ Cobyric acid synt 77.5 5.7 0.00012 41.6 6.4 136 235-397 200-340 (486)
273 PLN02889 oxo-acid-lyase/anthra 76.8 9.2 0.0002 43.6 8.3 89 292-398 84-178 (918)
274 cd03131 GATase1_HTS Type 1 glu 75.9 2.1 4.5E-05 38.9 2.4 88 305-395 16-111 (175)
275 cd03131 GATase1_HTS Type 1 glu 75.7 2 4.2E-05 39.0 2.2 92 102-196 16-115 (175)
276 TIGR01823 PabB-fungal aminodeo 75.5 13 0.00029 41.6 9.1 88 89-196 8-102 (742)
277 COG0505 CarA Carbamoylphosphat 73.1 3.3 7.2E-05 41.4 3.2 55 138-196 212-266 (368)
278 KOG3179 Predicted glutamine sy 72.1 19 0.00042 33.2 7.6 95 84-196 4-109 (245)
279 PF09897 DUF2124: Uncharacteri 71.2 16 0.00036 31.8 6.7 108 285-400 17-128 (147)
280 PRK02645 ppnK inorganic polyph 71.0 23 0.0005 35.1 8.8 91 287-396 3-97 (305)
281 PRK03708 ppnK inorganic polyph 69.9 30 0.00066 33.8 9.2 87 85-188 1-89 (277)
282 PF07722 Peptidase_C26: Peptid 69.5 4 8.6E-05 38.4 2.9 77 102-192 28-119 (217)
283 PRK03708 ppnK inorganic polyph 69.3 27 0.00059 34.1 8.7 89 288-393 1-91 (277)
284 PLN02889 oxo-acid-lyase/anthra 67.9 13 0.00028 42.4 6.9 93 89-195 84-177 (918)
285 COG3340 PepE Peptidase E [Amin 66.7 12 0.00025 35.0 5.1 91 84-190 32-128 (224)
286 PF08532 Glyco_hydro_42M: Beta 66.4 20 0.00042 33.3 6.8 64 97-187 29-92 (207)
287 PRK03372 ppnK inorganic polyph 65.9 52 0.0011 32.7 10.0 95 83-188 4-105 (306)
288 cd03143 A4_beta-galactosidase_ 65.5 36 0.00078 29.7 8.1 64 97-187 25-88 (154)
289 PRK03378 ppnK inorganic polyph 65.3 54 0.0012 32.3 10.0 91 83-188 4-96 (292)
290 PRK06455 riboflavin synthase; 65.2 15 0.00032 32.5 5.2 91 287-386 1-95 (155)
291 PRK06703 flavodoxin; Provision 63.9 24 0.00052 30.8 6.6 88 287-391 1-91 (151)
292 PRK02649 ppnK inorganic polyph 63.6 52 0.0011 32.7 9.5 93 84-188 1-101 (305)
293 PRK09271 flavodoxin; Provision 63.5 63 0.0014 28.5 9.3 91 288-391 1-94 (160)
294 PRK05568 flavodoxin; Provision 63.2 56 0.0012 27.9 8.7 88 84-189 1-92 (142)
295 PRK05568 flavodoxin; Provision 63.0 49 0.0011 28.3 8.3 86 287-390 1-90 (142)
296 PRK04539 ppnK inorganic polyph 62.9 68 0.0015 31.7 10.2 93 83-188 4-101 (296)
297 cd03143 A4_beta-galactosidase_ 62.3 40 0.00087 29.4 7.8 62 299-387 24-85 (154)
298 COG1492 CobQ Cobyric acid synt 61.6 24 0.00052 37.1 6.9 88 82-195 249-340 (486)
299 COG4635 HemG Flavodoxin [Energ 61.2 43 0.00093 29.8 7.3 83 86-188 2-88 (175)
300 PRK14077 pnk inorganic polypho 60.5 65 0.0014 31.7 9.5 89 82-188 8-97 (287)
301 PRK03372 ppnK inorganic polyph 60.1 68 0.0015 31.9 9.6 98 285-393 3-107 (306)
302 PRK05569 flavodoxin; Provision 59.2 42 0.00092 28.6 7.3 87 287-391 1-92 (141)
303 PRK02155 ppnK NAD(+)/NADH kina 59.2 65 0.0014 31.7 9.3 91 83-188 4-96 (291)
304 PF03853 YjeF_N: YjeF-related 59.0 1E+02 0.0022 27.6 9.9 110 286-399 24-148 (169)
305 KOG0370 Multifunctional pyrimi 58.5 20 0.00044 40.4 5.9 48 145-196 209-256 (1435)
306 PRK06756 flavodoxin; Provision 58.2 51 0.0011 28.5 7.7 88 287-392 1-93 (148)
307 COG4635 HemG Flavodoxin [Energ 58.0 56 0.0012 29.1 7.5 71 303-393 18-90 (175)
308 PF13380 CoA_binding_2: CoA bi 57.3 96 0.0021 25.8 8.8 81 85-181 1-81 (116)
309 PRK11914 diacylglycerol kinase 56.9 25 0.00054 34.7 6.0 87 82-187 6-96 (306)
310 PRK02155 ppnK NAD(+)/NADH kina 56.3 72 0.0016 31.4 9.0 92 287-393 5-98 (291)
311 PRK11104 hemG protoporphyrinog 56.0 73 0.0016 28.7 8.5 82 86-188 2-87 (177)
312 PF08532 Glyco_hydro_42M: Beta 55.8 36 0.00078 31.5 6.6 66 300-392 29-95 (207)
313 PRK01911 ppnK inorganic polyph 55.0 78 0.0017 31.2 9.0 93 85-188 1-97 (292)
314 PRK11104 hemG protoporphyrinog 54.7 87 0.0019 28.2 8.7 82 289-391 2-87 (177)
315 PRK01231 ppnK inorganic polyph 54.1 76 0.0016 31.3 8.8 93 286-393 3-97 (295)
316 KOG1252 Cystathionine beta-syn 53.5 37 0.00081 34.0 6.3 151 238-399 167-321 (362)
317 TIGR01754 flav_RNR ribonucleot 53.5 80 0.0017 27.1 8.0 42 348-391 49-90 (140)
318 PRK01231 ppnK inorganic polyph 53.1 93 0.002 30.7 9.3 90 84-188 4-95 (295)
319 PRK03378 ppnK inorganic polyph 53.0 1E+02 0.0022 30.5 9.4 92 286-392 4-97 (292)
320 PRK09271 flavodoxin; Provision 52.0 1.4E+02 0.0029 26.4 9.4 89 85-188 1-94 (160)
321 PRK02649 ppnK inorganic polyph 51.5 1E+02 0.0023 30.5 9.3 95 287-393 1-103 (305)
322 PRK01911 ppnK inorganic polyph 50.6 94 0.002 30.6 8.8 95 288-393 1-99 (292)
323 PLN02256 arogenate dehydrogena 50.1 2.3E+02 0.0049 28.1 11.5 151 286-451 35-194 (304)
324 PRK04539 ppnK inorganic polyph 49.4 1.3E+02 0.0028 29.8 9.6 95 286-393 4-103 (296)
325 PRK06455 riboflavin synthase; 48.7 48 0.001 29.3 5.7 63 84-155 1-65 (155)
326 KOG1224 Para-aminobenzoate (PA 48.2 25 0.00054 37.1 4.4 92 288-396 13-109 (767)
327 PF09822 ABC_transp_aux: ABC-t 47.8 1.4E+02 0.0029 28.9 9.5 80 83-187 145-233 (271)
328 PF06283 ThuA: Trehalose utili 46.4 1.4E+02 0.0031 27.6 9.1 40 348-391 51-90 (217)
329 PF03698 UPF0180: Uncharacteri 45.8 43 0.00093 26.2 4.4 37 98-155 8-44 (80)
330 cd08195 DHQS Dehydroquinate sy 45.5 52 0.0011 33.2 6.3 138 84-233 24-162 (345)
331 PRK14077 pnk inorganic polypho 45.4 1.1E+02 0.0025 30.0 8.5 89 287-393 10-99 (287)
332 TIGR03127 RuMP_HxlB 6-phospho 44.9 1E+02 0.0023 27.5 7.7 79 286-390 29-107 (179)
333 TIGR00147 lipid kinase, YegS/R 44.7 76 0.0016 31.0 7.3 94 84-198 1-103 (293)
334 PRK05569 flavodoxin; Provision 43.8 79 0.0017 26.9 6.5 89 84-190 1-94 (141)
335 PLN02871 UDP-sulfoquinovose:DA 43.6 1.9E+02 0.004 30.3 10.5 41 82-122 56-102 (465)
336 TIGR01754 flav_RNR ribonucleot 43.1 1.9E+02 0.004 24.7 8.7 87 86-188 2-90 (140)
337 PF11760 CbiG_N: Cobalamin syn 42.7 41 0.00088 26.5 3.9 69 169-253 2-76 (84)
338 cd05014 SIS_Kpsf KpsF-like pro 42.6 1.9E+02 0.0041 23.8 8.6 76 297-392 9-84 (128)
339 cd08195 DHQS Dehydroquinate sy 42.6 2E+02 0.0044 28.9 10.1 137 288-435 25-162 (345)
340 PRK07308 flavodoxin; Validated 42.4 1E+02 0.0022 26.5 7.0 85 288-391 2-91 (146)
341 PRK13054 lipid kinase; Reviewe 41.7 93 0.002 30.6 7.4 62 83-155 2-65 (300)
342 COG4090 Uncharacterized protei 41.7 1E+02 0.0022 26.4 6.3 102 287-399 26-132 (154)
343 PRK06703 flavodoxin; Provision 41.0 84 0.0018 27.2 6.3 86 84-188 1-91 (151)
344 PRK12361 hypothetical protein; 40.9 3.6E+02 0.0077 29.1 12.3 25 165-189 161-185 (547)
345 PF09897 DUF2124: Uncharacteri 40.5 79 0.0017 27.7 5.7 108 83-199 18-129 (147)
346 COG4090 Uncharacterized protei 40.4 79 0.0017 27.0 5.4 63 127-198 71-133 (154)
347 TIGR02336 1,3-beta-galactosyl- 40.2 78 0.0017 34.7 6.7 79 298-392 465-546 (719)
348 KOG1907 Phosphoribosylformylgl 39.8 2.7E+02 0.006 31.8 10.8 100 285-402 1056-1167(1320)
349 KOG0623 Glutamine amidotransfe 37.8 50 0.0011 32.9 4.5 74 99-193 13-88 (541)
350 PF04204 HTS: Homoserine O-suc 37.5 39 0.00084 33.4 3.7 109 80-190 30-145 (298)
351 TIGR00853 pts-lac PTS system, 37.3 2.2E+02 0.0047 22.8 7.9 90 83-203 2-93 (95)
352 PLN00118 isocitrate dehydrogen 37.3 58 0.0012 33.3 5.1 102 243-355 2-106 (372)
353 cd01481 vWA_collagen_alpha3-VI 36.9 66 0.0014 28.6 5.0 37 84-120 106-142 (165)
354 PRK03767 NAD(P)H:quinone oxido 36.8 94 0.002 28.5 6.2 101 84-189 1-116 (200)
355 PRK06756 flavodoxin; Provision 36.5 1.5E+02 0.0032 25.6 7.1 87 84-188 1-92 (148)
356 PRK03767 NAD(P)H:quinone oxido 36.5 59 0.0013 29.9 4.7 100 287-391 1-115 (200)
357 PRK06249 2-dehydropantoate 2-r 36.1 2.5E+02 0.0054 27.7 9.5 94 286-392 4-109 (313)
358 COG4126 Hydantoin racemase [Am 35.7 2.5E+02 0.0055 26.4 8.5 46 348-407 68-113 (230)
359 PF01058 Oxidored_q6: NADH ubi 35.6 38 0.00083 28.9 3.1 38 146-188 45-82 (131)
360 PF09508 Lact_bio_phlase: Lact 35.6 1E+02 0.0022 33.7 6.7 78 300-393 464-544 (716)
361 COG1941 FrhG Coenzyme F420-red 35.4 2.8E+02 0.0061 26.4 8.8 81 84-187 3-85 (247)
362 TIGR01001 metA homoserine O-su 35.1 82 0.0018 31.0 5.5 107 80-190 31-146 (300)
363 PF02310 B12-binding: B12 bind 34.9 42 0.0009 27.7 3.2 57 289-357 2-59 (121)
364 COG0062 Uncharacterized conser 34.6 3.8E+02 0.0083 24.9 9.8 92 288-388 50-157 (203)
365 PF09822 ABC_transp_aux: ABC-t 34.1 2.8E+02 0.0062 26.6 9.4 80 287-391 146-235 (271)
366 PRK14076 pnk inorganic polypho 33.9 2.3E+02 0.0051 30.7 9.5 93 81-188 287-381 (569)
367 PRK03094 hypothetical protein; 33.9 91 0.002 24.3 4.5 20 98-117 8-27 (80)
368 PF01058 Oxidored_q6: NADH ubi 33.7 41 0.00089 28.8 3.0 41 348-393 44-84 (131)
369 cd02071 MM_CoA_mut_B12_BD meth 33.7 80 0.0017 26.4 4.7 54 90-155 6-59 (122)
370 PRK13337 putative lipid kinase 33.2 1.3E+02 0.0029 29.5 7.0 85 84-187 1-91 (304)
371 cd02071 MM_CoA_mut_B12_BD meth 33.0 1.3E+02 0.0027 25.2 5.9 54 294-359 7-60 (122)
372 PF01975 SurE: Survival protei 32.7 79 0.0017 29.2 4.9 38 85-122 1-38 (196)
373 PRK06249 2-dehydropantoate 2-r 32.5 2.5E+02 0.0054 27.6 8.9 94 84-188 5-108 (313)
374 PRK10499 PTS system N,N'-diace 32.5 2.8E+02 0.0061 22.7 8.7 34 84-117 3-37 (106)
375 PF13380 CoA_binding_2: CoA bi 32.5 2.9E+02 0.0063 22.9 8.3 87 288-391 1-88 (116)
376 PLN02727 NAD kinase 32.4 2E+02 0.0043 33.0 8.5 97 286-393 677-778 (986)
377 KOG2387 CTP synthase (UTP-ammo 32.4 61 0.0013 33.6 4.3 41 146-190 363-403 (585)
378 PF12641 Flavodoxin_3: Flavodo 31.3 83 0.0018 28.0 4.6 40 145-189 38-77 (160)
379 TIGR01251 ribP_PPkin ribose-ph 31.3 1.7E+02 0.0038 28.9 7.4 109 287-396 47-174 (308)
380 cd01482 vWA_collagen_alphaI-XI 31.1 1.2E+02 0.0027 26.5 5.8 39 82-120 101-139 (164)
381 PRK03501 ppnK inorganic polyph 30.8 2.9E+02 0.0063 26.8 8.6 69 84-187 2-72 (264)
382 COG0061 nadF NAD kinase [Coenz 30.0 3.2E+02 0.0069 26.7 8.9 86 85-188 1-88 (281)
383 cd06533 Glyco_transf_WecG_TagA 29.9 85 0.0018 28.1 4.5 89 84-190 46-134 (171)
384 PRK04885 ppnK inorganic polyph 29.8 2.2E+02 0.0049 27.6 7.7 34 146-188 35-70 (265)
385 PF12682 Flavodoxin_4: Flavodo 29.6 25 0.00055 31.1 1.0 41 347-390 71-111 (156)
386 TIGR02336 1,3-beta-galactosyl- 29.4 1.5E+02 0.0032 32.7 6.7 78 96-190 466-546 (719)
387 cd06305 PBP1_methylthioribose_ 29.2 87 0.0019 29.5 4.8 85 86-187 1-88 (273)
388 PRK13055 putative lipid kinase 29.2 2.2E+02 0.0047 28.5 7.8 65 287-360 2-70 (334)
389 cd01473 vWA_CTRP CTRP for CS 28.9 98 0.0021 28.2 4.8 38 84-121 108-149 (192)
390 cd05005 SIS_PHI Hexulose-6-pho 28.5 3.4E+02 0.0073 24.1 8.3 79 286-390 32-110 (179)
391 TIGR01753 flav_short flavodoxi 27.8 1.6E+02 0.0036 24.6 5.9 71 304-392 17-90 (140)
392 PF12682 Flavodoxin_4: Flavodo 27.7 37 0.00081 30.0 1.7 43 143-188 70-112 (156)
393 PRK08040 putative semialdehyde 27.7 4E+02 0.0087 26.8 9.3 91 83-187 3-98 (336)
394 cd03142 GATase1_ThuA Type 1 gl 27.5 2.9E+02 0.0064 25.9 7.7 72 305-392 27-98 (215)
395 PF02441 Flavoprotein: Flavopr 27.4 1.2E+02 0.0027 25.5 4.9 102 85-187 1-119 (129)
396 PRK07308 flavodoxin; Validated 27.4 2.5E+02 0.0055 24.0 7.0 85 85-188 2-91 (146)
397 PF12724 Flavodoxin_5: Flavodo 27.2 81 0.0018 27.1 3.8 42 145-189 42-85 (143)
398 cd02070 corrinoid_protein_B12- 26.9 86 0.0019 28.9 4.1 60 287-358 82-142 (201)
399 cd01475 vWA_Matrilin VWA_Matri 26.6 1E+02 0.0023 28.7 4.7 36 85-120 109-144 (224)
400 cd06318 PBP1_ABC_sugar_binding 26.6 93 0.002 29.5 4.5 85 86-187 1-88 (282)
401 TIGR02370 pyl_corrinoid methyl 26.4 1.1E+02 0.0023 28.2 4.6 78 288-382 85-163 (197)
402 PRK04761 ppnK inorganic polyph 26.3 1E+02 0.0022 29.6 4.5 37 143-188 22-58 (246)
403 PRK02261 methylaspartate mutas 26.3 1.4E+02 0.003 25.8 5.0 59 84-154 3-62 (137)
404 PRK04761 ppnK inorganic polyph 26.3 91 0.002 29.9 4.2 38 347-393 23-60 (246)
405 PLN02935 Bifunctional NADH kin 26.2 4.2E+02 0.009 28.3 9.3 96 82-188 192-295 (508)
406 COG1182 AcpD Acyl carrier prot 26.2 2.7E+02 0.0059 25.8 7.0 78 147-252 88-165 (202)
407 PRK13055 putative lipid kinase 26.1 2.1E+02 0.0046 28.6 7.1 64 84-156 2-69 (334)
408 PF13685 Fe-ADH_2: Iron-contai 26.0 1.2E+02 0.0026 29.1 5.0 90 84-190 19-110 (250)
409 cd08197 DOIS 2-deoxy-scyllo-in 25.8 1.6E+02 0.0035 29.8 6.2 95 85-187 24-118 (355)
410 PRK02261 methylaspartate mutas 25.8 1.5E+02 0.0033 25.5 5.2 59 288-358 4-63 (137)
411 COG0061 nadF NAD kinase [Coenz 25.7 3.4E+02 0.0074 26.4 8.3 87 289-393 2-90 (281)
412 COG3075 GlpB Anaerobic glycero 25.7 2.6E+02 0.0056 28.3 7.1 38 286-323 137-174 (421)
413 PRK13932 stationary phase surv 25.6 1.9E+02 0.0042 27.9 6.3 40 285-325 3-42 (257)
414 cd01472 vWA_collagen von Wille 25.2 1.9E+02 0.0041 25.2 5.9 38 83-120 102-139 (164)
415 PRK14817 NADH dehydrogenase su 25.0 1.1E+02 0.0025 27.7 4.3 38 348-390 74-111 (181)
416 PLN02712 arogenate dehydrogena 25.0 2.5E+02 0.0053 31.3 7.8 94 286-391 368-462 (667)
417 cd02070 corrinoid_protein_B12- 24.7 99 0.0021 28.5 4.1 59 84-154 82-141 (201)
418 PF03853 YjeF_N: YjeF-related 24.6 3.9E+02 0.0084 23.7 7.8 115 82-199 23-150 (169)
419 PRK14817 NADH dehydrogenase su 24.5 1.2E+02 0.0025 27.7 4.2 40 143-187 72-111 (181)
420 PRK14076 pnk inorganic polypho 24.5 3.8E+02 0.0083 29.1 9.1 93 286-393 289-383 (569)
421 cd06305 PBP1_methylthioribose_ 24.2 1.2E+02 0.0026 28.5 4.7 34 289-322 1-37 (273)
422 TIGR02370 pyl_corrinoid methyl 23.9 1.6E+02 0.0035 27.0 5.3 78 85-179 85-163 (197)
423 cd02067 B12-binding B12 bindin 23.8 99 0.0021 25.5 3.6 53 91-155 7-59 (119)
424 PRK03501 ppnK inorganic polyph 23.7 4.1E+02 0.0089 25.7 8.3 71 287-392 2-75 (264)
425 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.7 1.6E+02 0.0035 24.2 4.9 39 348-392 45-83 (126)
426 cd01538 PBP1_ABC_xylose_bindin 23.6 1.2E+02 0.0025 29.2 4.6 85 86-187 1-88 (288)
427 PRK06411 NADH dehydrogenase su 23.5 1.1E+02 0.0025 27.8 4.1 40 143-187 71-110 (183)
428 cd02067 B12-binding B12 bindin 23.5 1.6E+02 0.0034 24.3 4.7 52 295-358 8-59 (119)
429 KOG1907 Phosphoribosylformylgl 23.4 2.3E+02 0.005 32.3 6.9 98 84-199 1058-1166(1320)
430 PLN02727 NAD kinase 23.2 4.1E+02 0.009 30.6 9.0 97 81-188 675-776 (986)
431 PRK06242 flavodoxin; Provision 23.1 1.2E+02 0.0026 26.0 4.1 43 145-190 42-85 (150)
432 PRK06411 NADH dehydrogenase su 23.0 1.2E+02 0.0027 27.6 4.2 38 348-390 73-110 (183)
433 PRK10355 xylF D-xylose transpo 23.0 1.9E+02 0.0042 28.6 6.1 88 83-187 24-114 (330)
434 PF02558 ApbA: Ketopantoate re 22.9 90 0.0019 26.8 3.3 82 306-393 13-105 (151)
435 cd08199 EEVS 2-epi-5-epi-valio 22.8 1.7E+02 0.0038 29.6 5.7 138 84-233 26-165 (354)
436 PLN02929 NADH kinase 22.2 3.1E+02 0.0067 27.2 7.1 63 302-392 35-97 (301)
437 PLN02204 diacylglycerol kinase 22.1 1.4E+02 0.0031 32.5 5.1 69 81-156 156-228 (601)
438 PRK10333 5-formyltetrahydrofol 22.0 3.1E+02 0.0067 24.8 6.7 71 286-357 33-117 (182)
439 cd06310 PBP1_ABC_sugar_binding 21.8 1.4E+02 0.003 28.2 4.6 86 86-187 1-90 (273)
440 PRK11914 diacylglycerol kinase 21.6 2.5E+02 0.0054 27.6 6.5 93 286-397 7-104 (306)
441 COG0337 AroB 3-dehydroquinate 21.6 3.1E+02 0.0067 27.9 7.0 115 83-208 32-147 (360)
442 PRK12419 riboflavin synthase s 21.6 1.1E+02 0.0024 27.2 3.5 64 83-155 9-78 (158)
443 PLN02958 diacylglycerol kinase 21.4 2.2E+02 0.0048 30.2 6.4 66 285-360 109-179 (481)
444 PRK00002 aroB 3-dehydroquinate 21.3 7.1E+02 0.015 25.1 9.9 97 288-392 32-128 (358)
445 PRK14075 pnk inorganic polypho 21.3 5.6E+02 0.012 24.6 8.7 71 85-188 1-71 (256)
446 PLN02935 Bifunctional NADH kin 21.3 5.2E+02 0.011 27.6 8.9 97 286-393 193-297 (508)
447 PRK08040 putative semialdehyde 21.2 6.4E+02 0.014 25.4 9.3 90 286-388 3-96 (336)
448 PRK05788 cobalamin biosynthesi 21.1 3E+02 0.0065 27.4 6.9 73 166-254 39-117 (315)
449 PRK13054 lipid kinase; Reviewe 21.0 3.8E+02 0.0082 26.2 7.7 65 286-360 2-67 (300)
450 PRK13932 stationary phase surv 20.8 2.5E+02 0.0055 27.1 6.1 38 84-122 5-42 (257)
451 COG1832 Predicted CoA-binding 20.7 5.2E+02 0.011 22.5 7.2 81 83-179 15-97 (140)
452 PRK08229 2-dehydropantoate 2-r 20.7 3.6E+02 0.0078 26.7 7.6 95 286-392 1-110 (341)
453 cd08197 DOIS 2-deoxy-scyllo-in 20.6 2.7E+02 0.0058 28.3 6.5 96 288-391 24-119 (355)
454 cd04795 SIS SIS domain. SIS (S 20.6 2E+02 0.0044 21.6 4.6 36 348-389 46-81 (87)
455 TIGR01357 aroB 3-dehydroquinat 20.5 1.9E+02 0.004 29.1 5.4 95 85-187 21-115 (344)
456 PRK06242 flavodoxin; Provision 20.3 1.6E+02 0.0034 25.3 4.3 43 348-393 42-85 (150)
457 COG1058 CinA Predicted nucleot 20.3 3.2E+02 0.0069 26.4 6.5 75 298-381 18-106 (255)
458 PF09558 DUF2375: Protein of u 20.2 62 0.0014 24.1 1.3 17 174-190 41-57 (71)
459 TIGR00147 lipid kinase, YegS/R 20.2 4.2E+02 0.0091 25.6 7.8 95 287-400 1-103 (293)
460 PF09508 Lact_bio_phlase: Lact 20.1 1.9E+02 0.0042 31.6 5.4 91 83-190 434-543 (716)
461 PLN02958 diacylglycerol kinase 20.1 3.3E+02 0.0072 28.9 7.4 65 82-156 109-178 (481)
462 COG4874 Uncharacterized protei 20.0 4.6E+02 0.01 25.1 7.2 79 96-181 55-133 (318)
463 COG4242 CphB Cyanophycinase an 20.0 1E+02 0.0023 29.5 3.1 51 348-398 105-156 (293)
No 1
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=100.00 E-value=5.3e-36 Score=270.34 Aligned_cols=241 Identities=38% Similarity=0.560 Sum_probs=214.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
++++.+|..+|.+++|+..+.++|++.|.+|++++++++.++.++.|..+.+|..+.+.-...||+++||||..+...|.
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~ 84 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS 84 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence 67899999999999999999999999999999999998889999999999999988888778999999999988889999
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE 241 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~d 241 (472)
.++.+.+.+++|++.++.|++||+|+.++|+..|++.|+++|+|+...+.+.+ ++|++.++|+|||++||+|+..+++
T Consensus 85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e 164 (247)
T KOG2764|consen 85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE 164 (247)
T ss_pred hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence 99999999999999999999999998778999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 012037 242 FALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVAS 321 (472)
Q Consensus 242 lal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs 321 (472)
|++.|+|++.|++.++++.+.|++.... +.|+-...|....++.+++ +-++.+-.
T Consensus 165 Fal~lvEqL~GKeka~~v~~~l~l~~~~------------------------v~~~~~~~e~~a~~~~~~~-~~~v~~~~ 219 (247)
T KOG2764|consen 165 FALKLVEQLGGKEKANEVKKPLSLLFLP------------------------VAPEKKAGEACATADHDLE-GRQVPVEK 219 (247)
T ss_pred HHHHHHHHhcCchhhhhhhccceeeccc------------------------cCCCchhcceecceehhhh-cCcceeec
Confidence 9999999999999999999887776432 6677888888888888888 65554433
Q ss_pred ecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 322 VERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 322 ~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
.. .+..-...++|+..++||+|++|||.
T Consensus 220 ~g----------~~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 220 VG----------HNFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred cc----------cceEEEEEehhhhcccccEEEecCCC
Confidence 32 22222234888888999999999983
No 2
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=4.1e-34 Score=262.16 Aligned_cols=175 Identities=43% Similarity=0.695 Sum_probs=160.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEE--EEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVV--ASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~--vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
||+|+++|||+++|+..++++|+.+|+++++ +|++++.++++++|+++.++..+++...++||+||||||......+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~ 80 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR 80 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence 6899999999999999999999999977765 99987548999999999999999986667899999999963345556
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhccee-cCCcEEECCCEEEcCChhhHHHHH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVV-NGTKVVVDGKVITSRGLANVIDFA 445 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~~~-~~~~vv~dg~iiTa~g~~~~~d~a 445 (472)
.++.+++||+++++++++|+++|+|+++||++|+|+||++|+||...+++++..+ .++.+++|||+|||+|+.+++||+
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~~ 160 (179)
T TIGR01383 81 NSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEFA 160 (179)
T ss_pred hCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHHH
Confidence 7899999999999999999999999999999999999999999999999988665 689999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHh
Q 012037 446 LAIVSKFFGHARTRSVAE 463 (472)
Q Consensus 446 l~li~~~~g~~~A~~va~ 463 (472)
+++|++++|++.|+++++
T Consensus 161 l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 161 LALVELLCGKEKAQEVAA 178 (179)
T ss_pred HHHHHHhcCHHHHHHhhc
Confidence 999999999999999986
No 3
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2.5e-33 Score=258.84 Aligned_cols=174 Identities=26% Similarity=0.389 Sum_probs=160.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
|+|+++|||++.|++.++|+|+.+| |+++++|.+++ ++++++|++|.+|..+++. .+||+|+||||.. .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~--~~~D~liipGg~~-~ 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDAL--AAADTVIVPGGPD-V 76 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCcccc--CCCCEEEECCCcc-c
Confidence 5899999999999999999999998 99999999997 9999999999999988855 7899999999963 4
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ce-ecCCcEEECCCEEEcCC
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDGKVITSRG 437 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~-~~~~~vv~dg~iiTa~g 437 (472)
.....++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ .. ..+..+++|||+|||+|
T Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g 156 (187)
T cd03137 77 DGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAG 156 (187)
T ss_pred ccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEccc
Confidence 44678999999999999999999999999999999999999999999999998876 23 34567899999999999
Q ss_pred hhhHHHHHHHHHHHhcCHHHHHHHHhhccc
Q 012037 438 LANVIDFALAIVSKFFGHARTRSVAEGLVF 467 (472)
Q Consensus 438 ~~~~~d~al~li~~~~g~~~A~~va~~l~~ 467 (472)
+.+++|+++++|++++|++.|+++++.|++
T Consensus 157 ~~~~~d~~l~li~~~~g~~~a~~~a~~l~~ 186 (187)
T cd03137 157 VTAGIDLCLHLVREDLGAAVANRVARRLVV 186 (187)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 999999999999999999999999998875
No 4
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=2.2e-33 Score=258.77 Aligned_cols=174 Identities=22% Similarity=0.361 Sum_probs=161.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
|+|++||||.+.|+.+++|+|+.+| |+|+++|.+++ ++++++|+++.+|..+++. .+||+||||||.. .
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~-~ 76 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLG-A 76 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCcccccc--CCCCEEEEeCCCC-c
Confidence 6899999999999999999999886 89999999997 9999999999999988766 7899999999963 3
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ceecCCcEEECCCEEEcCCh
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITSRGL 438 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~vv~dg~iiTa~g~ 438 (472)
. +..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++ ..+.++.+|.|||+|||+|+
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~ 155 (185)
T cd03136 77 R-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGG 155 (185)
T ss_pred c-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccH
Confidence 3 678999999999999999999999999999999999999999999999998875 35578899999999999999
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037 439 ANVIDFALAIVSKFFGHARTRSVAEGLVFE 468 (472)
Q Consensus 439 ~~~~d~al~li~~~~g~~~A~~va~~l~~~ 468 (472)
.+++||++++|++++|++.|+++++.|+++
T Consensus 156 ~~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 156 TAALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 999999999999999999999999999875
No 5
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=3.1e-33 Score=259.92 Aligned_cols=176 Identities=26% Similarity=0.414 Sum_probs=160.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhC------------CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRA------------KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 357 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a------------~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG 357 (472)
|+|++||||..++++.++|+|+.+ +|+|+++|.+++ ++++++|++|.+|..+++. ++||+|+|||
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~--~~~D~liIpg 77 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADV--PAPDLVIVPG 77 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceeccccccccc--CCCCEEEECC
Confidence 689999999999999999999975 389999999998 9999999999999988876 7899999999
Q ss_pred CCcchh--cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----c-eecCCcEEECC
Q 012037 358 GVAGAE--RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----E-VVNGTKVVVDG 430 (472)
Q Consensus 358 G~~~~~--~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~-~~~~~~vv~dg 430 (472)
|..... .+..++.+++||+++++++++|++||+|+++|+++|+|+||++|+||...+.+++ . ...++.+++||
T Consensus 78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg 157 (195)
T cd03138 78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDG 157 (195)
T ss_pred CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCC
Confidence 864333 4678999999999999999999999999999999999999999999999988876 2 33458899999
Q ss_pred CEEEcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037 431 KVITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 468 (472)
Q Consensus 431 ~iiTa~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~ 468 (472)
|+|||+|+.+++||++++|++++|.+.|+++++.|+++
T Consensus 158 ~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 158 NLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred CEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999998764
No 6
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=3.1e-33 Score=257.20 Aligned_cols=175 Identities=28% Similarity=0.499 Sum_probs=163.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCC-----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~-----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|+|+++|||++.|+..++|+|+.+| |+++++|.+++ ++++++|+++.+|..+++. .+||+|+||||. ....
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~-~~~~ 76 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGG-GTRA 76 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccC--CCCCEEEECCCc-chhh
Confidence 6899999999999999999999999 99999999998 9999999999999999876 689999999996 4555
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcc--ee-cCCcEEECCCEEEcCChhhH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE--VV-NGTKVVVDGKVITSRGLANV 441 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~--~~-~~~~vv~dg~iiTa~g~~~~ 441 (472)
+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++. .+ .++.+++|||+|||+|+.++
T Consensus 77 ~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~ 156 (183)
T cd03139 77 LVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAG 156 (183)
T ss_pred hccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHH
Confidence 7789999999999999999999999999999999999999999999999998862 33 88999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037 442 IDFALAIVSKFFGHARTRSVAEGLVFE 468 (472)
Q Consensus 442 ~d~al~li~~~~g~~~A~~va~~l~~~ 468 (472)
+||++++|++++|++.|+++++.|+++
T Consensus 157 ~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 157 IDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 999999999999999999999999864
No 7
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=100.00 E-value=7.2e-33 Score=270.38 Aligned_cols=183 Identities=27% Similarity=0.379 Sum_probs=169.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
...+|+++++|+|.++.+..++|.|+.|| |.|.+++.+++ +|.+++|+.|.+|..+++. ..+|+++++||
T Consensus 9 ~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~g 85 (328)
T COG4977 9 SPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAA--PPIDILPVCGG 85 (328)
T ss_pred CceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCccccc--CcceEEEEecC
Confidence 45689999999999999999999999998 67999999998 9999999999999999998 56999999888
Q ss_pred CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ceecCCcEEECCCEEE
Q 012037 359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVIT 434 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~vv~dg~iiT 434 (472)
. ..+...+.+++.+||++.+++|..|++||+|+|+||++||||||+||+||.+.+.|++ ....++.+++||++||
T Consensus 86 ~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T 164 (328)
T COG4977 86 L-GPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRIT 164 (328)
T ss_pred C-CcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEE
Confidence 6 3454445589999999999999999999999999999999999999999999998887 3578899999999999
Q ss_pred cCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCCC
Q 012037 435 SRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 472 (472)
Q Consensus 435 a~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r~ 472 (472)
|+|.++++||||+||++++|.++|.+|++.++++..|+
T Consensus 165 ~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~ 202 (328)
T COG4977 165 CAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS 202 (328)
T ss_pred cCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccC
Confidence 99999999999999999999999999999999998774
No 8
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=1.6e-32 Score=251.67 Aligned_cols=175 Identities=48% Similarity=0.740 Sum_probs=159.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEE--EeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTM--ASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~--vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
||+|+++|||+..|+..++++|+.+|+++++ +|+++|.+++++.|.++.+|..+++.+..+||+|+||||......+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~ 80 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLR 80 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHh
Confidence 6999999999999999999999999987776 99986558999999999999999886666899999999953345556
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCcc-ccCcEEEeCCEEeCCCCCChHHH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWA-VKSNIHVSGEVTTSRGPGTSFEF 242 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~-~~~~~v~Dg~iiTa~g~~~~~dl 242 (472)
.++.+.+||+++++++++|+++|+| .++|+++|+|+||++|+||.+.+.+++..+ .++.++.|||++||+|+.+++||
T Consensus 81 ~~~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~d~ 159 (179)
T TIGR01383 81 NSKLLLNILKKQESKGKLVAAICAA-PAVLLAAGVLLGKKATCYPGFKEKLLNGNYSVNEAVVVDGNIITSRGPGTAIEF 159 (179)
T ss_pred hCHHHHHHHHHHHHCCCEEEEEChh-HHHHHhcCCCCCCcEEECccHHHhccCCceeCCCCEEEeCCEEECCChhhHHHH
Confidence 7899999999999999999999995 779999999999999999999999988666 57889999999999999999999
Q ss_pred HHHHHHHHhCchhHHhhhh
Q 012037 243 ALCLVEQLFGESVAKEIGE 261 (472)
Q Consensus 243 al~li~~~~g~~~a~~va~ 261 (472)
++++|+++.|++.|+++++
T Consensus 160 ~l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 160 ALALVELLCGKEKAQEVAA 178 (179)
T ss_pred HHHHHHHhcCHHHHHHhhc
Confidence 9999999999999999975
No 9
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=100.00 E-value=5.3e-32 Score=244.16 Aligned_cols=162 Identities=48% Similarity=0.714 Sum_probs=150.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee-cCCCcEEeecCCccccCCCcccEEEEcCCCcchhccccc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV-ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 368 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~-s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~ 368 (472)
|+|+++|||++.|+..++++|+.+||+++++|++++ ++. ++.|+.+.++..+++.+..+||+||||||......+..+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence 689999999999999999999999999999999998 765 689999999999998877799999999997335556679
Q ss_pred HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCCEEEcCChhhHHHHHHHH
Q 012037 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLANVIDFALAI 448 (472)
Q Consensus 369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~iiTa~g~~~~~d~al~l 448 (472)
+++++||+++++++++|+++|+|+++||++|+|+||++|+||...+++.+..+.++.+|+|||+|||+|+.+++||++++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~l 159 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALKI 159 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987777788999999999999999999999999
Q ss_pred HHHh
Q 012037 449 VSKF 452 (472)
Q Consensus 449 i~~~ 452 (472)
|+++
T Consensus 160 i~~l 163 (163)
T cd03135 160 VEAL 163 (163)
T ss_pred HHhC
Confidence 9975
No 10
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.98 E-value=2.1e-31 Score=247.88 Aligned_cols=184 Identities=35% Similarity=0.588 Sum_probs=165.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecC--CcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER--STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~--~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
++|||+|+++|||+++|+..++++|++++++++++|.++ +.++++++|+++.+|..+++.+.++||+|+||||.....
T Consensus 1 ~~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~ 80 (196)
T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE 80 (196)
T ss_pred CCceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence 358999999999999999999999999999999999864 236999999999999999987666899999999964445
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHH-HHHcCCCCCceeccChhhHhhhhcceecCCcEEECC--CEEEcCChhh
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDG--KVITSRGLAN 440 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l-LA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg--~iiTa~g~~~ 440 (472)
.+..++.+++||++++++|++|++||+|+++ |+.+|+|+|+++|.+..+.+.+.+..+.++.+++|+ |+|||+|+++
T Consensus 81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a 160 (196)
T PRK11574 81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGT 160 (196)
T ss_pred hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcch
Confidence 5677889999999999999999999999985 777999999999999888888888777777888886 9999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhccccc
Q 012037 441 VIDFALAIVSKFFGHARTRSVAEGLVFEY 469 (472)
Q Consensus 441 ~~d~al~li~~~~g~~~A~~va~~l~~~~ 469 (472)
++||++++|++++|++.|+++++.|+++.
T Consensus 161 ~~dlal~li~~~~G~~~a~~va~~~~~~~ 189 (196)
T PRK11574 161 AIDFALKIIDLLVGREKAHEVASQLVMAA 189 (196)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhhccCc
Confidence 99999999999999999999999998865
No 11
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.97 E-value=4.4e-31 Score=264.40 Aligned_cols=181 Identities=28% Similarity=0.363 Sum_probs=163.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
++++|+|++||||+++|+++++|+|+.++ |+|+++|.+++ +|++++|+.|.+|..+++. ++||+||||||
T Consensus 8 ~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~--~~~D~livpGg 84 (322)
T PRK09393 8 HNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELL--DRADTIVIPGW 84 (322)
T ss_pred cccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCcccc--CCCCEEEECCC
Confidence 45799999999999999999999997765 79999999997 9999999999999999876 78999999998
Q ss_pred CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----c-eecCCcEEECCCEE
Q 012037 359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----E-VVNGTKVVVDGKVI 433 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~-~~~~~~vv~dg~ii 433 (472)
. +... ..++.+++||+++++++++|++||+|+++||++|||+|+++|+||...+.|++ . +..+..+|+|||+|
T Consensus 85 ~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~ii 162 (322)
T PRK09393 85 R-GPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQIL 162 (322)
T ss_pred C-cccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEE
Confidence 6 3333 46899999999999999999999999999999999999999999999999875 2 33445789999999
Q ss_pred EcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 434 TSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 434 Ta~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
||+|+.+++|+++++|++++|.+.++++++.|+++..|
T Consensus 163 T~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~ 200 (322)
T PRK09393 163 TSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR 200 (322)
T ss_pred ecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence 99999999999999999999999999999999987554
No 12
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=6.4e-32 Score=248.42 Aligned_cols=175 Identities=29% Similarity=0.373 Sum_probs=161.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCC-----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+||++|||+..|+..++|+|+.++ |++++++++++ +|++++|.++.+|.++++.+ +||+|+||||. ....
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~lvipgg~-~~~~ 76 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-PVSSRSGLTVLPDTSFADPP--DLDVLLVPGGG-GTRA 76 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-ceEeCCCCEEcCCcccccCC--CCCEEEECCCc-chhh
Confidence 6899999999999999999999998 99999999987 99999999999999998755 79999999994 4555
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C-cc-ccCcEEEeCCEEeCCCCCC
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F-WA-VKSNIHVSGEVTTSRGPGT 238 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~-~~-~~~~~v~Dg~iiTa~g~~~ 238 (472)
+..++.+++||+++++++|+|+++|+| .++|+++|+|+||++|+||...+.+++ + .+ .++.++.|||++||+|+.+
T Consensus 77 ~~~~~~~~~~l~~~~~~~k~i~aic~g-~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a 155 (183)
T cd03139 77 LVNDPALLDFIRRQAARAKYVTSVCTG-ALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSA 155 (183)
T ss_pred hccCHHHHHHHHHhcccCCEEEEEchH-HHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHH
Confidence 778999999999999999999999996 678999999999999999999999987 3 33 7888999999999999999
Q ss_pred hHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037 239 SFEFALCLVEQLFGESVAKEIGELLLMH 266 (472)
Q Consensus 239 ~~dlal~li~~~~g~~~a~~va~~l~~~ 266 (472)
++||++++|++++|++.|+++++.|+++
T Consensus 156 ~~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 156 GIDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 9999999999999999999999988753
No 13
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.97 E-value=2e-31 Score=245.73 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=159.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
|+|+++|||+..++..++|+|+.++ |+|++++.+++ +++++.|.++.+|..+.+.+ +||+|+||||. ..
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~i~~d~~~~~~~--~~D~liipgg~-~~ 76 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-PVTSSNGLRVAPDAALEDAP--PLDYLFVVGGL-GA 76 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-eeecCCCcEEeCCccccccC--CCCEEEEeCCC-Cc
Confidence 6899999999999999999999874 89999999976 99999999999999987654 89999999995 33
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----CccccCcEEEeCCEEeCCC
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVTTSRG 235 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~~v~Dg~iiTa~g 235 (472)
. +..++.+++||++++++++.|+++|+| .++|+++|+|+||++|+||...+.+++ .++.++.++.|||++|++|
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~i~aic~g-~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g 154 (185)
T cd03136 77 R-RAVTPALLAWLRRAARRGVALGGIDTG-AFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAG 154 (185)
T ss_pred c-ccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEecc
Confidence 3 678999999999999999999999996 679999999999999999999998876 4567788999999999999
Q ss_pred CCChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037 236 PGTSFEFALCLVEQLFGESVAKEIGELLLMH 266 (472)
Q Consensus 236 ~~~~~dlal~li~~~~g~~~a~~va~~l~~~ 266 (472)
+.+++||++++|++++|+++|+++++.|+++
T Consensus 155 ~~~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 155 GTAALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 9999999999999999999999999988764
No 14
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=1.1e-30 Score=236.55 Aligned_cols=162 Identities=28% Similarity=0.451 Sum_probs=149.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccccc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 368 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~ 368 (472)
||+|+++|||++.|+..++++|+++||+++++|.+++ +++++.|+++.++..+++.+..+||+|+||||.. ...+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHHhccC
Confidence 6899999999999999999999999999999999987 9999999999999999988666899999999963 5556678
Q ss_pred HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecC-CcEEECCCEEEcCChhhHHHHH
Q 012037 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG-TKVVVDGKVITSRGLANVIDFA 445 (472)
Q Consensus 369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~-~~vv~dg~iiTa~g~~~~~d~a 445 (472)
+.+.+||+++++++++|+++|+|+++||++|||+||++|+||...+.+++ ..+.+ +.+|+|||+|||+|+.++.+|+
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa 158 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFN 158 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHH
Confidence 89999999999999999999999999999999999999999999999886 35555 7999999999999999999999
Q ss_pred HHHHHHh
Q 012037 446 LAIVSKF 452 (472)
Q Consensus 446 l~li~~~ 452 (472)
.++++++
T Consensus 159 ~~~~~~l 165 (166)
T TIGR01382 159 REFLKLL 165 (166)
T ss_pred HHHHHHh
Confidence 9999985
No 15
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=4.3e-31 Score=243.84 Aligned_cols=174 Identities=25% Similarity=0.291 Sum_probs=157.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
|+|+++|||+..|+..++|+|+.++ |++++++++++ ++++++|+++.+|..+++.+ +||+|+||||. ..
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~g~~v~~d~~~~~~~--~~D~liipGg~-~~ 76 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-PVRSSSGLSLVADAGLDALA--AADTVIVPGGP-DV 76 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-ceeecCCcEEEcCcCccccC--CCCEEEECCCc-cc
Confidence 6899999999999999999999987 99999999976 99999999999999988554 89999999994 44
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----Ccccc-CcEEEeCCEEeCC
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVK-SNIHVSGEVTTSR 234 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~-~~~v~Dg~iiTa~ 234 (472)
.....++.+++||+++++++++|+++|+| .++|+++|+|+||++|+||...+.+++ ..+.+ ..++.|||++||+
T Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~ 155 (187)
T cd03137 77 DGRPPPPALLAALRRAAARGARVASVCTG-AFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSA 155 (187)
T ss_pred ccccCCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcc
Confidence 44678999999999999999999999996 679999999999999999999998877 34444 4588999999999
Q ss_pred CCCChHHHHHHHHHHHhCchhHHhhhhcccc
Q 012037 235 GPGTSFEFALCLVEQLFGESVAKEIGELLLM 265 (472)
Q Consensus 235 g~~~~~dlal~li~~~~g~~~a~~va~~l~~ 265 (472)
|+.+++|+++++|++++|++.|+++++.|++
T Consensus 156 g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~ 186 (187)
T cd03137 156 GVTAGIDLCLHLVREDLGAAVANRVARRLVV 186 (187)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 9999999999999999999999999998875
No 16
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=6.8e-31 Score=244.20 Aligned_cols=176 Identities=23% Similarity=0.285 Sum_probs=158.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhC------------CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRA------------GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~a------------g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
|+|+++|||...++..++|+|+.+ +|+|++++.+++ ++++++|.++.+|.++++.+ +||+|+|||
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-~v~s~~g~~i~~d~~~~~~~--~~D~liIpg 77 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-PVLLAGGILILPDATLADVP--APDLVIVPG 77 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-eeecCCCceecccccccccC--CCCEEEECC
Confidence 689999999999999999999963 599999999986 99999999999999888765 899999999
Q ss_pred Cccccc--cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C---cccc-CcEEEe
Q 012037 155 GMPGSV--RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVK-SNIHVS 227 (472)
Q Consensus 155 G~~~~~--~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~---~~~~-~~~v~D 227 (472)
|..... .+..++.+++||+++++++++|+++|+| .++|+++|+|+||++|+||...+.|++ + .+.+ +.++.|
T Consensus 78 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~d 156 (195)
T cd03138 78 LGGDPDELLLADNPALIAWLRRQHANGATVAAACTG-VFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTD 156 (195)
T ss_pred CcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHH-HHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeC
Confidence 854433 4678999999999999999999999996 679999999999999999999988877 3 3444 679999
Q ss_pred CCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037 228 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 266 (472)
Q Consensus 228 g~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~ 266 (472)
||++|++|+.+++|+++++|++++|.++|+++++.|.++
T Consensus 157 g~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 157 GNLITAGGAMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred CCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999988764
No 17
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.97 E-value=1.5e-30 Score=254.10 Aligned_cols=213 Identities=19% Similarity=0.297 Sum_probs=179.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
....+|+|+++++|..+.+..++|.|+.++ |.|.+++.+++ +|.+++|+.+.+|..+++.. .+|.+++.+
T Consensus 8 ~~~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~-~V~ss~G~~i~~d~~~~~~~--~~~~v~v~~ 84 (328)
T COG4977 8 PSPQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG-PVRSSSGLSIAPDGGLEAAP--PIDILPVCG 84 (328)
T ss_pred CCceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC-CcccCCCceEecCCcccccC--cceEEEEec
Confidence 446789999999999999999999999873 67999999987 99999999999999999887 599999988
Q ss_pred CccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Cc---cccCcEEEeCCE
Q 012037 155 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---AVKSNIHVSGEV 230 (472)
Q Consensus 155 G~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~---~~~~~~v~Dg~i 230 (472)
|. ........+++.+||++.+++|..|+++|+ |+|+||++||||||+||+||.+.+.|++ |+ ..++.+++||++
T Consensus 85 g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gict-Gaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~ 162 (328)
T COG4977 85 GL-GPERPVNAPALLAWLRRAARRGARLGGLCT-GAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDR 162 (328)
T ss_pred CC-CcccccchHHHHHHHHHHHhcCCeEEEehH-hHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCE
Confidence 83 444444448899999999999999999999 5899999999999999999999999988 54 345679999999
Q ss_pred EeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 012037 231 TTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDIL 310 (472)
Q Consensus 231 iTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l 310 (472)
+||+|+.+++|++++||++.+|.++|.+|+++|++++.++.... .++......+...-.+..+++.+
T Consensus 163 ~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~~~~~-------------Q~~~~~~~~~~~~~~l~~~i~~m 229 (328)
T COG4977 163 ITCAGGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRSGGDR-------------QRLPLLGRLGHRDPRLLRAIELM 229 (328)
T ss_pred EEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccCCCcc-------------ccccccccCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653321 12333333444555666666666
Q ss_pred Hh
Q 012037 311 RR 312 (472)
Q Consensus 311 ~~ 312 (472)
+.
T Consensus 230 e~ 231 (328)
T COG4977 230 EA 231 (328)
T ss_pred HH
Confidence 54
No 18
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.97 E-value=3.5e-30 Score=239.58 Aligned_cols=185 Identities=36% Similarity=0.576 Sum_probs=166.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCC--CcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~--g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
+|||+|++++||++.|+..++++|+++|+++++++.+. +.+++++.|..+.+|.++++.+..+||+|+||||......
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~ 81 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAEC 81 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhh
Confidence 57999999999999999999999999999999999863 2379999999999999998876668999999999544555
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeC--CEEeCCCCCCh
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSG--EVTTSRGPGTS 239 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg--~iiTa~g~~~~ 239 (472)
+.+++.+.+||+++++++++|++||+|+.++|+.+|+|+|+++|.++.+.+.+.+..+.+++++.|+ |++||+|+.++
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~~~iiT~~G~~a~ 161 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVNLLTSQGPGTA 161 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCCccEEeCCCcchH
Confidence 6778899999999999999999999976556778999999999999999888888788888888886 99999999999
Q ss_pred HHHHHHHHHHHhCchhHHhhhhccccccC
Q 012037 240 FEFALCLVEQLFGESVAKEIGELLLMHNA 268 (472)
Q Consensus 240 ~dlal~li~~~~g~~~a~~va~~l~~~~~ 268 (472)
+||++++|++++|.+.|+++++.|+++..
T Consensus 162 ~dlal~li~~~~G~~~a~~va~~~~~~~~ 190 (196)
T PRK11574 162 IDFALKIIDLLVGREKAHEVASQLVMAAG 190 (196)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhhccCcc
Confidence 99999999999999999999999987753
No 19
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=1.7e-30 Score=235.00 Aligned_cols=160 Identities=32% Similarity=0.504 Sum_probs=148.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEec-CCcceecCCCc-EEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE-RSTQIVASQGV-KIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~-~~~~v~s~~G~-~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
||+|+++|||++.|+..+++.|++++|+++++|++ ++ +++++.|. .+.+|..+++....+||+|+||||. ....+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence 68999999999999999999999999999999999 76 99999999 9999999998765689999999997 455566
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHHH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF 444 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d~ 444 (472)
.++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ ..+.++.+++|||+|||+|+.++++|
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f 158 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAF 158 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHH
Confidence 7899999999999999999999999999999999999999999999999886 56678889999999999999999999
Q ss_pred HHHHHH
Q 012037 445 ALAIVS 450 (472)
Q Consensus 445 al~li~ 450 (472)
++.+|+
T Consensus 159 ~~~~~~ 164 (165)
T cd03134 159 NRAILK 164 (165)
T ss_pred HHHHHh
Confidence 999986
No 20
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.97 E-value=1.8e-30 Score=235.08 Aligned_cols=154 Identities=31% Similarity=0.519 Sum_probs=136.9
Q ss_pred EeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 293 PIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 293 l~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
++||||.++|+++++|+|+.+| |++++++.+++ ++++++|+++.++..+++. .++|+||||||.. ....
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~--~~~D~lvvpg~~~-~~~~ 76 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDA--PDFDILVVPGGPG-FDAA 76 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCC--SCCSEEEEE-STT-HHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhc--ccCCEEEeCCCCC-chhc
Confidence 6899999999999999999999 99999999998 9999999999999999996 8899999999984 4556
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcc-----eecCCcEEECCCEEEcCChhh
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE-----VVNGTKVVVDGKVITSRGLAN 440 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~-----~~~~~~vv~dg~iiTa~g~~~ 440 (472)
..++.+++||+++++++++|+++|+|+++||++|+|+|+++|+||...+.+++. +..++.+|.|||+|||+|..+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~ 156 (166)
T PF13278_consen 77 AKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTA 156 (166)
T ss_dssp TT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCH
T ss_pred ccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHH
Confidence 788999999999999999999999999999999999999999999999999872 335999999999999999999
Q ss_pred HHHHHHHHHH
Q 012037 441 VIDFALAIVS 450 (472)
Q Consensus 441 ~~d~al~li~ 450 (472)
++|+++++||
T Consensus 157 ~~dl~l~li~ 166 (166)
T PF13278_consen 157 AIDLALYLIE 166 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999996
No 21
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.97 E-value=2.6e-30 Score=233.09 Aligned_cols=162 Identities=46% Similarity=0.672 Sum_probs=148.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee-ccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE-ASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 165 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~-~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~ 165 (472)
|+||++|||+..|+..++++|+.+||+++++|+++| ++. ++.|..+.+|.++++.+..+||+|+||||......+.++
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-LAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-ceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhC
Confidence 689999999999999999999999999999999987 765 689999999999998866789999999995345556789
Q ss_pred hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCEEeCCCCCChHHHHHH
Q 012037 166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALC 245 (472)
Q Consensus 166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~~~~dlal~ 245 (472)
+.+++||+++++++|+|+++|+| .++|+++|+|+||++|+||.+.+.+.+.++.++.+|+|||++|++|+.++.||+++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~l~T~~g~~s~~d~al~ 158 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAA-PAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGNIITSRGPGTAFEFALK 158 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchh-HHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECCEEEcCCcccHHHHHHH
Confidence 99999999999999999999996 67999999999999999999999997778888899999999999999999999999
Q ss_pred HHHHH
Q 012037 246 LVEQL 250 (472)
Q Consensus 246 li~~~ 250 (472)
+|+++
T Consensus 159 li~~l 163 (163)
T cd03135 159 IVEAL 163 (163)
T ss_pred HHHhC
Confidence 99874
No 22
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=9.1e-30 Score=230.47 Aligned_cols=162 Identities=27% Similarity=0.361 Sum_probs=149.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 165 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~ 165 (472)
||+||+++||++.|+..++++|+++|+++++++.+++ ++.++.|..+.++.++++.+..+||+|+||||. ....+..+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-ceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccC
Confidence 6999999999999999999999999999999999876 999999999999999988876789999999994 45555678
Q ss_pred hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--Ccccc-CcEEEeCCEEeCCCCCChHHH
Q 012037 166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK-SNIHVSGEVTTSRGPGTSFEF 242 (472)
Q Consensus 166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~-~~~v~Dg~iiTa~g~~~~~dl 242 (472)
+.+.+||+++++++|+|+++|+| .++|+++|+|+||++|+||...+.+++ ..+.+ +.+|+|||+|||+|+.++.+|
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f 157 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHG-PQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAF 157 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChH-HHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHH
Confidence 99999999999999999999996 669999999999999999999998887 66777 689999999999999999999
Q ss_pred HHHHHHHH
Q 012037 243 ALCLVEQL 250 (472)
Q Consensus 243 al~li~~~ 250 (472)
+.++++++
T Consensus 158 a~~~~~~l 165 (166)
T TIGR01382 158 NREFLKLL 165 (166)
T ss_pred HHHHHHHh
Confidence 99999875
No 23
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.9e-29 Score=229.21 Aligned_cols=159 Identities=24% Similarity=0.424 Sum_probs=142.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccccc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKS 368 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~ 368 (472)
|+|+++|||+++|++.++++|+++ +|++++++.+++ ++++++|+.|.++..+++.+..+||+|+||||.. ... ..+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~-~~~-~~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDS-WDN-PEA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCcc-ccc-CCc
Confidence 589999999999999999999997 799999999998 9999999999999999987656899999999963 332 378
Q ss_pred HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChh-hHhhhhc-----ceecCCcEEECCCEEEcCChhhHH
Q 012037 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPS-VIGKLTN-----EVVNGTKVVVDGKVITSRGLANVI 442 (472)
Q Consensus 369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~-~~~~l~~-----~~~~~~~vv~dg~iiTa~g~~~~~ 442 (472)
+.+++||+++++++++|++||+|+++||++|+|+||++|+||. ..+.++. .++.++.+|+|||+|||+|.. ++
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~a-~~ 156 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGTA-PV 156 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCcC-HH
Confidence 8999999999999999999999999999999999999999985 5565643 466789999999999998755 79
Q ss_pred HHHHHHHHHh
Q 012037 443 DFALAIVSKF 452 (472)
Q Consensus 443 d~al~li~~~ 452 (472)
||++++|+++
T Consensus 157 d~al~~i~~l 166 (170)
T cd03140 157 EFAAEILRAL 166 (170)
T ss_pred HHHHHHHHHc
Confidence 9999999986
No 24
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.96 E-value=1.5e-29 Score=228.87 Aligned_cols=160 Identities=27% Similarity=0.395 Sum_probs=147.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeC-CCcceeccCCc-eeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEVEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~-~g~~v~~~~G~-~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
||+|+++|||+..|+..++++|+++||++++++++ ++ +++++.|. .+.+|..+++....+||+|+||||. ....+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-ccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chhhhc
Confidence 69999999999999999999999999999999999 66 99999999 9999999988776689999999995 555567
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE 241 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~d 241 (472)
.++.+++||+++++++|+|+++|+| .++|+++|+|+||++|+||...+.+++ ..+.++.+++|||+|||+|+.++++
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~ 157 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHG-PWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPA 157 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchH-HHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHH
Confidence 7899999999999999999999996 669999999999999999999998887 6677888999999999999999999
Q ss_pred HHHHHHH
Q 012037 242 FALCLVE 248 (472)
Q Consensus 242 lal~li~ 248 (472)
|+..+|+
T Consensus 158 f~~~~~~ 164 (165)
T cd03134 158 FNRAILK 164 (165)
T ss_pred HHHHHHh
Confidence 9999986
No 25
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.96 E-value=2.2e-29 Score=227.60 Aligned_cols=183 Identities=40% Similarity=0.652 Sum_probs=170.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
++.+.++..+|.+++|+..+.|+|++.|.+|++++++++.++.++.|.++.+|..+.|.-..+||+++||||..+.+.+.
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~ 84 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLS 84 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhh
Confidence 46788888999999999999999999999999999999889999999999999998887668999999999966789999
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID 443 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d 443 (472)
+.+.+.+.+++|.+.|++|++||+|+ .+|+..|++.|+++|+|+...+.+.+ .++.+.++|+|||+||++|+.++++
T Consensus 85 ~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~e 164 (247)
T KOG2764|consen 85 ECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFE 164 (247)
T ss_pred hcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHH
Confidence 99999999999999999999999999 67777788889999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccccc
Q 012037 444 FALAIVSKFFGHARTRSVAEGLVFEY 469 (472)
Q Consensus 444 ~al~li~~~~g~~~A~~va~~l~~~~ 469 (472)
|++.|+|.+.|++.+.++.+.+.+-+
T Consensus 165 Fal~lvEqL~GKeka~~v~~~l~l~~ 190 (247)
T KOG2764|consen 165 FALKLVEQLGGKEKANEVKKPLSLLF 190 (247)
T ss_pred HHHHHHHHhcCchhhhhhhccceeec
Confidence 99999999999999999998887643
No 26
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=8.7e-29 Score=227.08 Aligned_cols=163 Identities=21% Similarity=0.383 Sum_probs=145.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc--ceec-------------CCCcEEeecCCccccCCCcccEE
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVA-------------SQGVKIIADKSISDAAESVYDLI 353 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~--~v~s-------------~~G~~v~~d~~l~~~~~~~~D~l 353 (472)
||+|+++|||++.|+..++++|+++|++++++|++++. +++. ..|..+.++..+++....+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 68999999999999999999999999999999999861 2333 36899999999998866689999
Q ss_pred EEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCC
Q 012037 354 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK 431 (472)
Q Consensus 354 ivpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~ 431 (472)
+||||. +...+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ ..+.++.+++|||
T Consensus 81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~ 159 (180)
T cd03169 81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGN 159 (180)
T ss_pred EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECC
Confidence 999997 4444567889999999999999999999999999999999999999999999988886 3467788999999
Q ss_pred EEEcCChhhHHHHHHHHHHHh
Q 012037 432 VITSRGLANVIDFALAIVSKF 452 (472)
Q Consensus 432 iiTa~g~~~~~d~al~li~~~ 452 (472)
+|||+|+.+..+|+.++++.+
T Consensus 160 iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 160 LVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred EEEecCCchHHHHHHHHHHhC
Confidence 999999999999999999864
No 27
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.96 E-value=7e-29 Score=248.46 Aligned_cols=185 Identities=22% Similarity=0.265 Sum_probs=163.0
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHhC-------CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEE
Q 012037 79 NSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRA-------GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIA 151 (472)
Q Consensus 79 ~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~a-------g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vi 151 (472)
+++..+++|+|+++|||+.+|+.+++|+|+.+ .|+|++++.+++ +|++++|+.+.+|..+++.+ +||+|+
T Consensus 4 ~~~~~~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-~v~ss~g~~i~~d~~~~~~~--~~D~li 80 (322)
T PRK09393 4 MMTMHNHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-PLRAAGGITVVADGGLELLD--RADTIV 80 (322)
T ss_pred cccccccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-ceEeCCCcEEeCCCCccccC--CCCEEE
Confidence 34455689999999999999999999999764 279999999987 99999999999999998765 899999
Q ss_pred EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C---ccccC-cEEE
Q 012037 152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F---WAVKS-NIHV 226 (472)
Q Consensus 152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~---~~~~~-~~v~ 226 (472)
||||. +... ..++.+.+||+++++++++|++||+| .++||++|+|+|+++|+||.+.+.|++ + .+.++ .++.
T Consensus 81 vpGg~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~ 157 (322)
T PRK09393 81 IPGWR-GPDA-PVPEPLLEALRAAHARGARLCSICSG-VFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVD 157 (322)
T ss_pred ECCCC-cccc-cCCHHHHHHHHHHHHcCCEEEEEcHH-HHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEe
Confidence 99984 4333 46899999999999999999999996 679999999999999999999998876 3 33443 5888
Q ss_pred eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037 227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNAD 269 (472)
Q Consensus 227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~ 269 (472)
|||++||+|+.+++|+++++|++.+|.+.++.+++.|+++..+
T Consensus 158 ~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~ 200 (322)
T PRK09393 158 EGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR 200 (322)
T ss_pred cCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence 9999999999999999999999999999999999999987655
No 28
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=3.9e-28 Score=222.78 Aligned_cols=163 Identities=22% Similarity=0.311 Sum_probs=144.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc--ceec-------------cCCceeeeCCCcCCCCCCcccEE
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEA-------------SSGTRLVADTSISNCSHQVFDLI 150 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~--~v~~-------------~~G~~v~~d~~~~~~~~~~~D~v 150 (472)
||+|+++|||+..|+..++++|+++|+++++++++++. +++. ..|..+.++.++++.++.+||+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 69999999999999999999999999999999999752 2333 25889999999998877789999
Q ss_pred EEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeC
Q 012037 151 ALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSG 228 (472)
Q Consensus 151 ivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg 228 (472)
+||||. +...+..++.+.+||+++++++|+|++||+| .++|+++|+|+||++|+||...+.+++ ..+.+++++.||
T Consensus 81 iv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G-~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~ 158 (180)
T cd03169 81 VIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHG-PQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDG 158 (180)
T ss_pred EEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcH-HHHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEEC
Confidence 999994 4444567889999999999999999999996 569999999999999999999988887 457778899999
Q ss_pred CEEeCCCCCChHHHHHHHHHHH
Q 012037 229 EVTTSRGPGTSFEFALCLVEQL 250 (472)
Q Consensus 229 ~iiTa~g~~~~~dlal~li~~~ 250 (472)
|+|||+|+.++.+|+.++++.+
T Consensus 159 ~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 159 NLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred CEEEecCCchHHHHHHHHHHhC
Confidence 9999999999999999999863
No 29
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.96 E-value=2.2e-28 Score=221.41 Aligned_cols=154 Identities=29% Similarity=0.385 Sum_probs=134.3
Q ss_pred EeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 90 PVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 90 ll~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|++|||+..+++.++|+|+.++ |++++++.+++ ++++++|+.+.++..+++.. ++|+|+||||. .....
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-~v~~s~g~~i~~~~~~~~~~--~~D~lvvpg~~-~~~~~ 76 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-PVTSSSGLRIQPDGSLDDAP--DFDILVVPGGP-GFDAA 76 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-EEEBTTSEEEEESEETCCCS--CCSEEEEE-ST-THHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-eeeecCCeEEEeccChhhcc--cCCEEEeCCCC-Cchhc
Confidence 6899999999999999999997 99999999986 99999999999999999855 89999999995 34556
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Cc---cc-cCcEEEeCCEEeCCCCC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW---AV-KSNIHVSGEVTTSRGPG 237 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~---~~-~~~~v~Dg~iiTa~g~~ 237 (472)
..++.+++||+++++++++|+++|+| +++|+++|+|+|+++|+||...+.|++ ++ +. ++.+|.|||++||+|..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~ 155 (166)
T PF13278_consen 77 AKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPT 155 (166)
T ss_dssp TT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCC
T ss_pred ccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHH
Confidence 67899999999999999999999995 789999999999999999999999988 43 33 77899999999999999
Q ss_pred ChHHHHHHHHH
Q 012037 238 TSFEFALCLVE 248 (472)
Q Consensus 238 ~~~dlal~li~ 248 (472)
+++|++++|||
T Consensus 156 ~~~dl~l~li~ 166 (166)
T PF13278_consen 156 AAIDLALYLIE 166 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999996
No 30
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.95 E-value=1.7e-27 Score=216.42 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=140.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 165 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~ 165 (472)
|+|+++|||++.|+..+++.|+++ +|++++++++++ ++++++|+.+.++.++++.+..+||+|+||||. ... ...+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~-~~~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWD-NPEA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-eeEecCCeEEccccchhHCCHhHccEEEEcCCc-ccc-cCCc
Confidence 689999999999999999999997 899999999987 999999999999999998755689999999994 332 3478
Q ss_pred hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcc-hhccCCC-----CccccCcEEEeCCEEeCCCCCCh
Q 012037 166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPA-FTDKLPT-----FWAVKSNIHVSGEVTTSRGPGTS 239 (472)
Q Consensus 166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~-~~~~l~~-----~~~~~~~~v~Dg~iiTa~g~~~~ 239 (472)
+.+.+||+++++++++|+++|+| .++|+++|+|+||++|+||. +.+.+++ ..+.++.+|+|||+|||+| .++
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g-~a~ 155 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGA-TLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANG-TAP 155 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChH-HHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCC-cCH
Confidence 99999999999999999999996 66999999999999999986 5666653 3566888999999999987 558
Q ss_pred HHHHHHHHHHH
Q 012037 240 FEFALCLVEQL 250 (472)
Q Consensus 240 ~dlal~li~~~ 250 (472)
+||++++|+++
T Consensus 156 ~d~al~~i~~l 166 (170)
T cd03140 156 VEFAAEILRAL 166 (170)
T ss_pred HHHHHHHHHHc
Confidence 99999999975
No 31
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.93 E-value=8.8e-26 Score=213.78 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcce---------------------ecCCCcEEeecCCccccCCCcccEEE
Q 012037 296 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQI---------------------VASQGVKIIADKSISDAAESVYDLII 354 (472)
Q Consensus 296 ~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v---------------------~s~~G~~v~~d~~l~~~~~~~~D~li 354 (472)
.|++..|+..|+++|+++|++|+++|++|+..+ .++.+.++.++..+++++.++||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 689999999999999999999999999874111 22345567788899999889999999
Q ss_pred EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-------CCCCCceeccChhhH--------------
Q 012037 355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKATAHPSVI-------------- 413 (472)
Q Consensus 355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-------GlL~g~~~T~~~~~~-------------- 413 (472)
||||+++...+.+++.++++|++|+++||+|++||+|+.+|+.+ ++++||++|+|+..+
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~ 179 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN 179 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence 99998666778999999999999999999999999999999987 999999999998653
Q ss_pred -----hhhhc--ceec------CCcEEECCCEEEcCChhhHHHHHHHHHHHh
Q 012037 414 -----GKLTN--EVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKF 452 (472)
Q Consensus 414 -----~~l~~--~~~~------~~~vv~dg~iiTa~g~~~~~d~al~li~~~ 452 (472)
+.+++ ..+. +..+|+|||+||++++.++.+|++.|++++
T Consensus 180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 33332 3333 455999999999999999999999999875
No 32
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.93 E-value=1.1e-25 Score=212.83 Aligned_cols=156 Identities=28% Similarity=0.339 Sum_probs=134.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec--------------------CCCcEEeecCCccccCCCcccEEEE
Q 012037 296 NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA--------------------SQGVKIIADKSISDAAESVYDLIIL 355 (472)
Q Consensus 296 ~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s--------------------~~G~~v~~d~~l~~~~~~~~D~liv 355 (472)
+||++.|+..|+++|+++|++|+++|++++ .+.. ..|.++.++..+++++.++||+|+|
T Consensus 18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~i 96 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFI 96 (221)
T ss_pred CccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEE
Confidence 799999999999999999999999999886 4221 2345578899999998889999999
Q ss_pred cCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCCCceeccChhhHhh--------------
Q 012037 356 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK-------------- 415 (472)
Q Consensus 356 pGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~g~~~T~~~~~~~~-------------- 415 (472)
|||......+..++.+++||+++++++++|++||+|+++|+++| +|+||++|+||...+.
T Consensus 97 pGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~ 176 (221)
T cd03141 97 PGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED 176 (221)
T ss_pred CCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence 99975445677899999999999999999999999999999999 7999999999876554
Q ss_pred -hhc--ceecC-----CcEEECCCEEEcCChhhHHHHHHHHHHHh
Q 012037 416 -LTN--EVVNG-----TKVVVDGKVITSRGLANVIDFALAIVSKF 452 (472)
Q Consensus 416 -l~~--~~~~~-----~~vv~dg~iiTa~g~~~~~d~al~li~~~ 452 (472)
+++ ..+.+ ..+|+|+|+||++|+.++.+|++++|+.+
T Consensus 177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 333 23333 56999999999999999999999999874
No 33
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.92 E-value=2.8e-25 Score=210.36 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=132.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcce---------------------eccCCceeeeCCCcCCCCCCcccEEE
Q 012037 93 FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEV---------------------EASSGTRLVADTSISNCSHQVFDLIA 151 (472)
Q Consensus 93 ~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v---------------------~~~~G~~v~~d~~~~~~~~~~~D~vi 151 (472)
.|++..|+..++++|+++|++|+++|++++.++ .++.+..+.++..+++++..+||+|+
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 689999999999999999999999999753111 12334467788899998888999999
Q ss_pred EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-------CCCCCceeecCcchh-------------
Q 012037 152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQITCHPAFT------------- 211 (472)
Q Consensus 152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-------GlL~g~~~T~~~~~~------------- 211 (472)
||||++....+.+++.+.++|+++++++|+|++||+|++ +|+.+ ++++||++|+|+...
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~ 178 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKR 178 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhccc
Confidence 999987777899999999999999999999999999987 67766 899999999999754
Q ss_pred ------ccCCC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHH
Q 012037 212 ------DKLPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQL 250 (472)
Q Consensus 212 ------~~l~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~ 250 (472)
+.+++ +.|.+ ..+|+|||+||++++.++.+|++++++++
T Consensus 179 ~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 179 NLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 22332 45553 34899999999999999999999999864
No 34
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=199.41 Aligned_cols=170 Identities=34% Similarity=0.558 Sum_probs=150.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC-cceecCCC-cEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS-TQIVASQG-VKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~-~~v~s~~G-~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
++||++++++||++.|+..|+++|+++++.+++++..++ ..+.+..| ..+.++..+++++..+||+|++|||..++..
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 578999999999999999999999999999999999984 35666655 6666778888886679999999999436777
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC-CCCCceeccChhhHhhhhc------ceecCC-----cEEECCC-
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPSVIGKLTN------EVVNGT-----KVVVDGK- 431 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG-lL~g~~~T~~~~~~~~l~~------~~~~~~-----~vv~dg~- 431 (472)
+..++.+++|++++++++++|++||+|+.+|+.+| +|+||++|+++...+...+ ..+.+. .++.|||
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~ 161 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNA 161 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCe
Confidence 77779999999999999999999999999999999 9999999999988888766 566666 9999999
Q ss_pred EEEcCChhhHHHHHHHHHHHhcCHH
Q 012037 432 VITSRGLANVIDFALAIVSKFFGHA 456 (472)
Q Consensus 432 iiTa~g~~~~~d~al~li~~~~g~~ 456 (472)
++|+.++.++.+++..+++++.+..
T Consensus 162 lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 162 LVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred EEEcCCcccHHHHHHHHHHHHhccc
Confidence 9999999999999999999988754
No 35
>PRK04155 chaperone protein HchA; Provisional
Probab=99.92 E-value=3.4e-24 Score=208.21 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=136.5
Q ss_pred CCCEEEEEeC--------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC-----------------CCc
Q 012037 286 RMPRVLIPIA--------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS-----------------QGV 334 (472)
Q Consensus 286 ~~~~V~il~~--------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~-----------------~G~ 334 (472)
..+||+|++. .|+++.|+..|+++|+++||+|+++|++|+ ++... .+.
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~ 126 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKS 126 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhh
Confidence 3458998876 689999999999999999999999999886 43221 122
Q ss_pred EEeecCCcccc----C--CCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCC
Q 012037 335 KIIADKSISDA----A--ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLK 402 (472)
Q Consensus 335 ~v~~d~~l~~~----~--~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~ 402 (472)
.+..+..++++ . .++||+||||||++....+..++.+.++|+++++++|+|++||+|+++|..+| +++
T Consensus 127 ~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~ 206 (287)
T PRK04155 127 KFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLN 206 (287)
T ss_pred hccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccC
Confidence 23333334333 2 57999999999987678899999999999999999999999999999999999 999
Q ss_pred CceeccChhh-------------------Hhhhhc--ceecC----CcEEECCCEEEcCChhhHHHHHHHHHHHhc
Q 012037 403 AKKATAHPSV-------------------IGKLTN--EVVNG----TKVVVDGKVITSRGLANVIDFALAIVSKFF 453 (472)
Q Consensus 403 g~~~T~~~~~-------------------~~~l~~--~~~~~----~~vv~dg~iiTa~g~~~~~d~al~li~~~~ 453 (472)
||++|+|+.. .+.+++ ..+.+ ..+|+|||+||++|+.++.+|++.+++.+.
T Consensus 207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll 282 (287)
T PRK04155 207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL 282 (287)
T ss_pred CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence 9999998765 334443 23334 589999999999999999999999999876
No 36
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.91 E-value=1.2e-24 Score=205.60 Aligned_cols=157 Identities=25% Similarity=0.302 Sum_probs=132.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec--------------------cCCceeeeCCCcCCCCCCcccEEE
Q 012037 92 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA--------------------SSGTRLVADTSISNCSHQVFDLIA 151 (472)
Q Consensus 92 ~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~--------------------~~G~~v~~d~~~~~~~~~~~D~vi 151 (472)
.+||++.|+..|+++|+++|++|++++++++ .+.. ..|..+.++..+++++..+||+|+
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG~~V~~as~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ 95 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAGYEVDFASPKGG-KVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF 95 (221)
T ss_pred cCccCHHHHHHHHHHHHHCCCeEEEECCCCC-CCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence 4899999999999999999999999999875 3221 233457889999999888999999
Q ss_pred EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC------CCCCceeecCcchhcc------------
Q 012037 152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK------------ 213 (472)
Q Consensus 152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG------lL~g~~~T~~~~~~~~------------ 213 (472)
||||......+..++.+.+||+++++++|+|++||+|+ ++|+++| +|+||++|+||...+.
T Consensus 96 ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~ 174 (221)
T cd03141 96 IPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLL 174 (221)
T ss_pred ECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCH
Confidence 99996445567889999999999999999999999974 5899999 7999999999987654
Q ss_pred ---CCC--Ccccc-----CcEEEeCCEEeCCCCCChHHHHHHHHHHH
Q 012037 214 ---LPT--FWAVK-----SNIHVSGEVTTSRGPGTSFEFALCLVEQL 250 (472)
Q Consensus 214 ---l~~--~~~~~-----~~~v~Dg~iiTa~g~~~~~dlal~li~~~ 250 (472)
+++ ..|.+ ..+|+|+|+||++|+.++.+|++.+|+.+
T Consensus 175 ~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 175 EDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 332 33443 45999999999999999999999999864
No 37
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.91 E-value=7.3e-24 Score=187.87 Aligned_cols=137 Identities=42% Similarity=0.616 Sum_probs=121.8
Q ss_pred eEEEEEecCCcceecCCC---cEEeecCCccccCCCcccEEEEcCCCcchhccccc-HHHHHHHHHHHHcCCeEEEEchh
Q 012037 316 DVVVASVERSTQIVASQG---VKIIADKSISDAAESVYDLIILPGGVAGAERLQKS-RILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 316 ~v~~vs~~~~~~v~s~~G---~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~-~~l~~~L~~~~~~g~~v~aic~G 391 (472)
+|++++...+..++++.| .++.+|..+++++..+||+||||||....+.+..+ +.++++|+++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 588999988768999999 99999999999999999999999998657788745 99999999999999999999999
Q ss_pred HHHHHHcCCCCCceeccChhhHhhhhc--ceecC--CcEEECC-CEEEcCChhhHHHHHHHHHHHh
Q 012037 392 PIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG--TKVVVDG-KVITSRGLANVIDFALAIVSKF 452 (472)
Q Consensus 392 ~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~--~~vv~dg-~iiTa~g~~~~~d~al~li~~~ 452 (472)
+.+|+++|+|+|+++|+|+...+.++. ..+.+ ..+++|| |+||++|+.++.+|++++|+.|
T Consensus 81 ~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 81 PAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp HHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred cchhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 999999999999999999998886665 34444 8899999 9999999999999999999986
No 38
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=193.65 Aligned_cols=170 Identities=29% Similarity=0.439 Sum_probs=151.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCC-cceeccCC-ceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ-LEVEASSG-TRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g-~~v~~~~G-~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
++||++++++||+..|+..|+++|+++|++++++++..+ ..+.+..| ..+.++..+++.+..+||+|++|||..+...
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 679999999999999999999999999999999999974 35566665 6667778888887779999999999556666
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-CCCCceeecCcchhccCCC------CccccC-----cEEEeCC
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPAFTDKLPT------FWAVKS-----NIHVSGE 229 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-lL~g~~~T~~~~~~~~l~~------~~~~~~-----~~v~Dg~ 229 (472)
+..++.+++|++++++++|+|++||+|+. +|+.+| +++||++|+++...+...+ ..|++. .+|.||+
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~ 160 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGN 160 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECC
Confidence 77779999999999999999999999766 899999 9999999999998887665 678887 8999999
Q ss_pred -EEeCCCCCChHHHHHHHHHHHhCch
Q 012037 230 -VTTSRGPGTSFEFALCLVEQLFGES 254 (472)
Q Consensus 230 -iiTa~g~~~~~dlal~li~~~~g~~ 254 (472)
++|+.++.++.+|+..+++++.+..
T Consensus 161 ~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 161 ALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred eEEEcCCcccHHHHHHHHHHHHhccc
Confidence 9999999999999999999988764
No 39
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.91 E-value=6.9e-24 Score=200.99 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=135.2
Q ss_pred eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec-----------------CCCcEEeecCCcccc------CCCcc
Q 012037 294 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----------------SQGVKIIADKSISDA------AESVY 350 (472)
Q Consensus 294 ~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s-----------------~~G~~v~~d~~l~~~------~~~~~ 350 (472)
+..||++.|+..|+++|+++||+|+++|++|+ .+.. ..+.++..+..++++ +.++|
T Consensus 19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dY 97 (232)
T cd03148 19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEY 97 (232)
T ss_pred cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhc
Confidence 46899999999999999999999999999886 3321 234457778888887 45799
Q ss_pred cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCC------CCCceeccChhhHhhhh-------
Q 012037 351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGL------LKAKKATAHPSVIGKLT------- 417 (472)
Q Consensus 351 D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGl------L~g~~~T~~~~~~~~l~------- 417 (472)
|+||+|||+++...+..++.+.+++++++++||+|++||+|+++|..+++ ++||++|+++..++...
T Consensus 98 Dav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~ 177 (232)
T cd03148 98 AAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYM 177 (232)
T ss_pred eEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccc
Confidence 99999999877788999999999999999999999999999999999999 99999999988766421
Q ss_pred -------------c--cee----cCCcEEECCCEEEcCChhhHHHHHHHHHHHhc
Q 012037 418 -------------N--EVV----NGTKVVVDGKVITSRGLANVIDFALAIVSKFF 453 (472)
Q Consensus 418 -------------~--~~~----~~~~vv~dg~iiTa~g~~~~~d~al~li~~~~ 453 (472)
+ ..+ .+..+|+|||+||++++.++..++.++|+.++
T Consensus 178 ~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~ 232 (232)
T cd03148 178 PGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML 232 (232)
T ss_pred cCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence 1 112 24479999999999999999999999998763
No 40
>PRK04155 chaperone protein HchA; Provisional
Probab=99.91 E-value=6e-24 Score=206.47 Aligned_cols=167 Identities=19% Similarity=0.305 Sum_probs=134.6
Q ss_pred CcEEEEEeC--------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc-----------------CCce
Q 012037 84 PKKVLVPVG--------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS-----------------SGTR 132 (472)
Q Consensus 84 ~~kV~ill~--------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~-----------------~G~~ 132 (472)
.|||+|++. .|+++.|+..++++|+++|++|+++|++++ ++... .+..
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~-~~~~d~~s~~~~d~~v~~~~~~~~~~ 127 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN-PVKFEYWAMPHEDEAVMGFYEKYKSK 127 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccccchhHHHHHHHhhhh
Confidence 458999886 588999999999999999999999999875 43221 1222
Q ss_pred eeeCCCcCCC----C--CCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC------CCC
Q 012037 133 LVADTSISNC----S--HQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLR 200 (472)
Q Consensus 133 v~~d~~~~~~----~--~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG------lL~ 200 (472)
+..+..++++ . ..+||+||||||++....++.++.+.++|+++++++|+|++||+|++ +|..+| +++
T Consensus 128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~ 206 (287)
T PRK04155 128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLN 206 (287)
T ss_pred ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccC
Confidence 2333333322 2 56899999999987778899999999999999999999999999987 566688 999
Q ss_pred CceeecCcchh-------------------ccCCC--Ccccc----CcEEEeCCEEeCCCCCChHHHHHHHHHHHhC
Q 012037 201 RKQITCHPAFT-------------------DKLPT--FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFG 252 (472)
Q Consensus 201 g~~~T~~~~~~-------------------~~l~~--~~~~~----~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g 252 (472)
||++|+|+... +.|++ +.+++ ..+|+|||+||++++.++.+|++.+++.+..
T Consensus 207 GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~ 283 (287)
T PRK04155 207 GYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA 283 (287)
T ss_pred CCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence 99999998763 33443 45666 5799999999999999999999999998763
No 41
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.90 E-value=6.1e-24 Score=188.37 Aligned_cols=137 Identities=32% Similarity=0.497 Sum_probs=122.1
Q ss_pred EEEEEeeCCCcceeccCC---ceeeeCCCcCCCCCCcccEEEEcCCccccccccCC-hHHHHHHHHHHhcCCeEEEEchh
Q 012037 113 QVTMASVEPQLEVEASSG---TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC-EILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 113 ~v~~vs~~~g~~v~~~~G---~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~-~~~~~~l~~~~~~~k~I~aic~g 188 (472)
+|+++++..++.+++++| .++.+|.++++++..+||+|+||||......+..+ +.+.+||+++++++|+|++||+|
T Consensus 1 ~V~~vs~~~~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 1 KVDVVSPGDGKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEEESSSSSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred CEEEEECCCCCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 588999998878999999 99999999999999999999999997667788855 99999999999999999999998
Q ss_pred hHHhhhcCCCCCCceeecCcchhccCCC--Ccccc--CcEEEeC-CEEeCCCCCChHHHHHHHHHHH
Q 012037 189 PAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVK--SNIHVSG-EVTTSRGPGTSFEFALCLVEQL 250 (472)
Q Consensus 189 ~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~--~~~v~Dg-~iiTa~g~~~~~dlal~li~~~ 250 (472)
+ .+|+++|+|+||++|+|+...+.++. ..|.+ ..+++|| |+||++|+.++.+|++++++.+
T Consensus 81 ~-~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 81 P-AVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp H-HHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred c-chhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 6 58999999999999999999886555 66766 7899999 9999999999999999999986
No 42
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.89 E-value=2.7e-23 Score=196.94 Aligned_cols=159 Identities=14% Similarity=0.240 Sum_probs=132.6
Q ss_pred EeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec-----------------cCCceeeeCCCcCCC------CCCc
Q 012037 90 PVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----------------SSGTRLVADTSISNC------SHQV 146 (472)
Q Consensus 90 ll~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~-----------------~~G~~v~~d~~~~~~------~~~~ 146 (472)
.+..||++.|+..|+++|+++|++|+++|++++ .+.. ..+..+..+..++++ +..+
T Consensus 18 ~~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~-~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~d 96 (232)
T cd03148 18 LFSTGNHPVEMLLPLYHLHAAGFDFDVATLSGL-PVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSE 96 (232)
T ss_pred CcCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhh
Confidence 346899999999999999999999999999876 3321 133446777788776 3468
Q ss_pred ccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCC------CCCceeecCcchhccCC-----
Q 012037 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL------LRRKQITCHPAFTDKLP----- 215 (472)
Q Consensus 147 ~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGl------L~g~~~T~~~~~~~~l~----- 215 (472)
||+|++|||++.+..+++++.+.++++++|+++|+|++||+|++ +|..+++ ++||++|+++...+...
T Consensus 97 YDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~ 175 (232)
T cd03148 97 YAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIG 175 (232)
T ss_pred ceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccc
Confidence 99999999987788899999999999999999999999999987 5667888 99999999998776421
Q ss_pred ---C--------------Ccccc----CcEEEeCCEEeCCCCCChHHHHHHHHHHH
Q 012037 216 ---T--------------FWAVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQL 250 (472)
Q Consensus 216 ---~--------------~~~~~----~~~v~Dg~iiTa~g~~~~~dlal~li~~~ 250 (472)
+ +.+.. ..+|+|||+||++++.++..++..+|+.+
T Consensus 176 ~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 176 YMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred cccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 1 22222 36999999999999999999999999875
No 43
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.88 E-value=7.1e-22 Score=185.05 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=123.7
Q ss_pred CCEEEEEeC-----CCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----------ceecCCCcEEeec-------CCccc
Q 012037 287 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISD 344 (472)
Q Consensus 287 ~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----------~v~s~~G~~v~~d-------~~l~~ 344 (472)
|+||+|++. +||++.|+..|++.|+++|++++++|++++. .+....++.+..+ ..+++
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 468999997 9999999999999999999999999998751 1233344545443 57888
Q ss_pred cCCCcccEEEEcCCCcch----------hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccC--hhh
Q 012037 345 AAESVYDLIILPGGVAGA----------ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH--PSV 412 (472)
Q Consensus 345 ~~~~~~D~livpGG~~~~----------~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~--~~~ 412 (472)
++.++||+||+|||++.. +.++.++.+++++++|+++||+|++||+|+++|+.+.. +||++|++ +..
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~~ 159 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGNDEDT 159 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecCChhh
Confidence 888899999999997543 23456899999999999999999999999999998732 89999999 888
Q ss_pred Hhhhhc--ceecCC---cEEEC--CCEEEcCCh
Q 012037 413 IGKLTN--EVVNGT---KVVVD--GKVITSRGL 438 (472)
Q Consensus 413 ~~~l~~--~~~~~~---~vv~d--g~iiTa~g~ 438 (472)
..++++ ..+.+. .+|+| ||+|||...
T Consensus 160 ~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~ 192 (217)
T PRK11780 160 AAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAY 192 (217)
T ss_pred HHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcc
Confidence 888887 455443 67777 789999953
No 44
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.87 E-value=6.3e-22 Score=185.43 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=124.4
Q ss_pred CcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc----------ceeccCCceeeeC-------CCcCC
Q 012037 84 PKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISN 141 (472)
Q Consensus 84 ~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~----------~v~~~~G~~v~~d-------~~~~~ 141 (472)
|+||+|++. +||++.|+..|++.|+++|++++++|++++. .+....+..+..+ ..+++
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 479999998 9999999999999999999999999998752 1233334444443 57778
Q ss_pred CCCCcccEEEEcCCccccc----------cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecC--cc
Q 012037 142 CSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCH--PA 209 (472)
Q Consensus 142 ~~~~~~D~vivpGG~~~~~----------~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~--~~ 209 (472)
++..+||+|++|||++... .++.++.+.++++++++++|+|++||+|++ +|+.+.. +||++|++ +.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~ 158 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDED 158 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChh
Confidence 8888999999999975433 345589999999999999999999999987 5666522 89999999 98
Q ss_pred hhccCCC--CccccC---cEEEe--CCEEeCCCCCC
Q 012037 210 FTDKLPT--FWAVKS---NIHVS--GEVTTSRGPGT 238 (472)
Q Consensus 210 ~~~~l~~--~~~~~~---~~v~D--g~iiTa~g~~~ 238 (472)
...++++ +.|++. .+|+| ||+||+.....
T Consensus 159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~~ 194 (217)
T PRK11780 159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYML 194 (217)
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcccC
Confidence 8888888 788875 68888 78999986543
No 45
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.86 E-value=1.1e-20 Score=166.38 Aligned_cols=113 Identities=25% Similarity=0.367 Sum_probs=104.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+||+|+++|||++.|+..++|+|+.+||+++++|++++ +++++.|+++.++.++++....+||+|+||||......+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~ 80 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP 80 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence 68999999999999999999999999999999999998 99999999999999999876668999999999743444567
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCC
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL 401 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL 401 (472)
++.+++||+++++++++|+++|+|+++||++|+|
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 8999999999999999999999999999999997
No 46
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.86 E-value=6.8e-21 Score=177.30 Aligned_cols=152 Identities=24% Similarity=0.319 Sum_probs=121.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----------ceecCCCcEEeec-------CCccccCCCcccEEEEcC
Q 012037 295 ANGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSISDAAESVYDLIILPG 357 (472)
Q Consensus 295 ~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----------~v~s~~G~~v~~d-------~~l~~~~~~~~D~livpG 357 (472)
+|||++.|+..|+++|+++|++++++|++++. .+....++.+.++ ..+++++.++||+|+|||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG 90 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG 90 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence 58999999999999999999999999997641 2333556666665 678888778999999999
Q ss_pred CCcchhcc----------cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccCh--hhHhhhhc--ceecC
Q 012037 358 GVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP--SVIGKLTN--EVVNG 423 (472)
Q Consensus 358 G~~~~~~~----------~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~--~~~~~l~~--~~~~~ 423 (472)
|......+ +.++.+++++++|+++||+|++||+|+++|+.++. +||++|+|+ ..++++++ ..+.+
T Consensus 91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d 169 (213)
T cd03133 91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVN 169 (213)
T ss_pred CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEe
Confidence 97543333 34889999999999999999999999999999766 999999999 88888875 44443
Q ss_pred ---CcEEEC--CCEEEcCCh---hhHHHHHHH
Q 012037 424 ---TKVVVD--GKVITSRGL---ANVIDFALA 447 (472)
Q Consensus 424 ---~~vv~d--g~iiTa~g~---~~~~d~al~ 447 (472)
..+++| ||+|||+.. .+..+.++.
T Consensus 170 ~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~ 201 (213)
T cd03133 170 CPVEEIVVDEKNKVVTTPAYMLADSIHEIADG 201 (213)
T ss_pred CCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence 356665 799999954 334444443
No 47
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.85 E-value=4.2e-21 Score=178.68 Aligned_cols=145 Identities=21% Similarity=0.217 Sum_probs=117.5
Q ss_pred CCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc----------ceeccCCceeeeC-------CCcCCCCCCcccEEEEcC
Q 012037 92 GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----------EVEASSGTRLVAD-------TSISNCSHQVFDLIALPG 154 (472)
Q Consensus 92 ~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~----------~v~~~~G~~v~~d-------~~~~~~~~~~~D~vivpG 154 (472)
+|||++.|+..++++|+++|++++++|+++|. .+....+..+..+ .++++++..+||+|+|||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPG 90 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPG 90 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECC
Confidence 68999999999999999999999999997641 2333455556555 677887778999999999
Q ss_pred Cccccccc----------cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCc--chhccCCC--Cccc
Q 012037 155 GMPGSVRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP--AFTDKLPT--FWAV 220 (472)
Q Consensus 155 G~~~~~~l----------~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~--~~~~~l~~--~~~~ 220 (472)
|+.....+ +.++.++++++++++++|+|++||+|++ +|+.++. +||++|+|+ ...+.+++ +.|+
T Consensus 91 G~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~ 168 (213)
T cd03133 91 GFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHV 168 (213)
T ss_pred CCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEE
Confidence 96544333 3488999999999999999999999887 6777655 999999999 88888876 6777
Q ss_pred cC---cEEEe--CCEEeCCCCCC
Q 012037 221 KS---NIHVS--GEVTTSRGPGT 238 (472)
Q Consensus 221 ~~---~~v~D--g~iiTa~g~~~ 238 (472)
+. .+|+| ||+|||.....
T Consensus 169 d~~~~~vvvd~dg~lITs~~~~~ 191 (213)
T cd03133 169 NCPVEEIVVDEKNKVVTTPAYML 191 (213)
T ss_pred eCCCCeEEEECCCCEEeCccccC
Confidence 53 67776 78999997654
No 48
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.84 E-value=3.3e-20 Score=163.42 Aligned_cols=139 Identities=21% Similarity=0.259 Sum_probs=118.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
++||+|++++||+..|+..++++|+.+|++++++|++++ +++++.|.++.++.++++.+..+||+|+||||......+.
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~ 79 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALA 79 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHc
Confidence 478999999999999999999999999999999999987 9999999999999999988767899999999954444456
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCEEeCCCCCChHHHH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFA 243 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~~~~dla 243 (472)
.++.+.+||+++++++|+|+++|+| .++|+++|+|- .|.+++|+++.... +.
T Consensus 80 ~~~~l~~~l~~~~~~~~~I~aic~G-~~~La~aGll~-------------------------~~~gv~~~~~~~~~--~~ 131 (142)
T cd03132 80 PSGRALHFVTEAFKHGKPIGAVGEG-SDLLEAAGIPL-------------------------EDPGVVTADDVKDV--FT 131 (142)
T ss_pred cChHHHHHHHHHHhcCCeEEEcCch-HHHHHHcCCCC-------------------------CCCcEEEecCcchH--HH
Confidence 7899999999999999999999996 66999999972 24678888754432 45
Q ss_pred HHHHHHHh
Q 012037 244 LCLVEQLF 251 (472)
Q Consensus 244 l~li~~~~ 251 (472)
..+|+.+.
T Consensus 132 ~~~~~~~~ 139 (142)
T cd03132 132 DRFIDALA 139 (142)
T ss_pred HHHHHHHH
Confidence 66666543
No 49
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.79 E-value=1.7e-18 Score=185.35 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=123.9
Q ss_pred CCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCc
Q 012037 52 NSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGT 131 (472)
Q Consensus 52 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~ 131 (472)
++.+.||+|| +..+....+.+|||+||++||++..++..++++|+++|++++++++++| +|+++.|.
T Consensus 577 ~~~~~s~als------------~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~ 643 (752)
T PRK11249 577 NGLKKDPALS------------LYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGT 643 (752)
T ss_pred CCCCCCcchh------------ccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCC
Confidence 3688899998 6666677889999999999999999999999999999999999999987 99999999
Q ss_pred eeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCC
Q 012037 132 RLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR 200 (472)
Q Consensus 132 ~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~ 200 (472)
.+.+|.++.+.++.+||+|+||||..+...+..++.+++||+++|+|+|+|+++|+| ..+|+++||.+
T Consensus 644 ~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~ 711 (752)
T PRK11249 644 VLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPD 711 (752)
T ss_pred EEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCC
Confidence 999999999998889999999999656777888999999999999999999999996 66999999954
No 50
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.62 E-value=6.4e-15 Score=158.09 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
..+||+||++||++..|+..+.++|+.+|.+++++|++++ +|+++.|..|.+|.++++.....||+|+||||..+...+
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L 674 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADL 674 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHH
Confidence 4589999999999999999999999999999999999998 999999999999999999876789999999996556778
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCC
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLK 402 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~ 402 (472)
..++.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus 675 ~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 675 ADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred hhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence 8899999999999999999999999999999999965
No 51
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.13 E-value=5.1e-10 Score=105.60 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=75.8
Q ss_pred CEEEEEeCCCCC-HHHHHHHHHHHH-hCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh--
Q 012037 288 PRVLIPIANGSE-EIEIVTIVDILR-RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-- 363 (472)
Q Consensus 288 ~~V~il~~~g~~-~~e~~~~~d~l~-~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-- 363 (472)
+||+|+.++|.+ +.|+ .+.|+ .+|+++.++..+.. ++ ++||+|+||||....+
T Consensus 1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l--~~~D~lvipGG~~~~d~l 57 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DL--DGVDAVVLPGGFSYGDYL 57 (219)
T ss_pred CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CC--CCCCEEEECCCCchhhhh
Confidence 489999999987 5666 77787 78998887765321 22 5789999999963222
Q ss_pred ---cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCce
Q 012037 364 ---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKK 405 (472)
Q Consensus 364 ---~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~ 405 (472)
....++.+++||+++.++++++++||+|..+|+++|||+|+-
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred ccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 223457899999999999999999999999999999999863
No 52
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.12 E-value=3.2e-10 Score=108.44 Aligned_cols=128 Identities=17% Similarity=0.150 Sum_probs=90.9
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc--
Q 012037 290 VLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ-- 366 (472)
Q Consensus 290 V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~-- 366 (472)
|+|+.+||. ++.| .+++|+++|+++.+++.+.. +.. +.+.++||.|+||||....+.+.
T Consensus 1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~~--~~~-------------~~~l~~~d~liipGG~~~~d~l~~~ 62 (238)
T cd01740 1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHNDL--LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG 62 (238)
T ss_pred CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccCC--ccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence 689999997 6666 67888899999998877541 111 11126799999999963233322
Q ss_pred ---ccHH-HHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc-ceecCCcEEECCCEEEcC
Q 012037 367 ---KSRI-LKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVNGTKVVVDGKVITSR 436 (472)
Q Consensus 367 ---~~~~-l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~vv~dg~iiTa~ 436 (472)
.... +.++|+++.+++++|.+||.|..+|+++|+|.|+. +.++........ ..+.+..++.|++++|+.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred cccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence 1223 88999999999999999999999999999999976 555443322221 123445566788888876
No 53
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.07 E-value=9.1e-10 Score=105.33 Aligned_cols=128 Identities=19% Similarity=0.119 Sum_probs=92.5
Q ss_pred EEEEeCCCCc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc--
Q 012037 87 VLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR-- 163 (472)
Q Consensus 87 V~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~-- 163 (472)
|+||.++|.. +.| .+++|+++|+++.++.... .+.. .....+||+|+||||....+.+.
T Consensus 1 v~vl~~pG~n~~~~---~~~al~~aG~~v~~v~~~~--~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~ 62 (238)
T cd01740 1 VAVLRFPGSNCDRD---MAYAFELAGFEAEDVWHND--LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAG 62 (238)
T ss_pred CEEEEcCCcCCHHH---HHHHHHHcCCCEEEEeccC--Cccc-------------cCCHhhCCEEEECCCCCcccccccc
Confidence 6899999974 444 6899999999999988763 1111 11223799999999953222222
Q ss_pred ---CChH-HHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-CccccCcEEEeCCEEeCC
Q 012037 164 ---DCEI-LKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVKSNIHVSGEVTTSR 234 (472)
Q Consensus 164 ---~~~~-~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~v~Dg~iiTa~ 234 (472)
.... +.++|+++++++++|++||.|.+ +|+++|+|.|+. |.++........ ..|++..++.|++++|+.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 63 AIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred cccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceeccccCceEEEEEcCCCCceecC
Confidence 1223 88999999999999999999765 899999999976 666654443332 355666677889999986
No 54
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.03 E-value=1.7e-09 Score=104.25 Aligned_cols=99 Identities=26% Similarity=0.376 Sum_probs=74.9
Q ss_pred CCEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
++||+|++++|++ +.|+ +++|+++|+++.++..... .+ .-.++ ++||+|+||||....+.+
T Consensus 3 ~~kvaVl~~pG~n~d~e~---~~Al~~aG~~v~~v~~~~~------------~~-~~~~l--~~~DgLvipGGfs~gD~l 64 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDET---VKAFRRLGVEPEYVHINDL------------AA-ERKSV--SDYDCLVIPGGFSAGDYI 64 (261)
T ss_pred CCEEEEEeCCCCCCHHHH---HHHHHHCCCcEEEEeeccc------------cc-cccch--hhCCEEEECCCCCccccc
Confidence 4799999999996 6655 6899999999998876531 01 11122 679999999995322322
Q ss_pred ccc--------HHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCC
Q 012037 366 QKS--------RILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 403 (472)
Q Consensus 366 ~~~--------~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g 403 (472)
... +.+.+.|+++.+++++|.+||.|..+|+++|+|-|
T Consensus 65 ~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 65 RAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 211 23457889999999999999999999999999987
No 55
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.95 E-value=6.3e-09 Score=98.23 Aligned_cols=95 Identities=24% Similarity=0.241 Sum_probs=74.1
Q ss_pred cEEEEEeCCCCc-HHHHHHHHHHHH-hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--
Q 012037 85 KKVLVPVGFGTE-EMEAVIIVDVLR-RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-- 160 (472)
Q Consensus 85 ~kV~ill~~g~~-~~e~~~~~~~l~-~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-- 160 (472)
+||+||.++|.. +.|+ +++|+ .+|+++.++..+.. +.+ +||+|+||||.....
T Consensus 1 ~~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~------------------~l~--~~D~lvipGG~~~~d~l 57 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET------------------DLD--GVDAVVLPGGFSYGDYL 57 (219)
T ss_pred CEEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC------------------CCC--CCCEEEECCCCchhhhh
Confidence 489999999987 4544 88888 88999888865421 222 699999999953221
Q ss_pred ---cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCce
Q 012037 161 ---RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQ 203 (472)
Q Consensus 161 ---~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~ 203 (472)
....+..+.+||+++++++++|++||+| ..+|+++|||+|+-
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G-~qlLa~~GLL~g~l 102 (219)
T PRK03619 58 RCGAIAAFSPIMKAVKEFAEKGKPVLGICNG-FQILTEAGLLPGAL 102 (219)
T ss_pred ccchhhhchHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCCCCeE
Confidence 2234578899999999999999999996 56899999999853
No 56
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.91 E-value=7.9e-09 Score=99.62 Aligned_cols=101 Identities=24% Similarity=0.283 Sum_probs=73.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
++||+|++++|+.... .++++|+++|+++.++..... .+. .....+||+|+||||....+.+.
T Consensus 3 ~~kvaVl~~pG~n~d~--e~~~Al~~aG~~v~~v~~~~~------------~~~---~~~l~~~DgLvipGGfs~gD~l~ 65 (261)
T PRK01175 3 SIRVAVLRMEGTNCED--ETVKAFRRLGVEPEYVHINDL------------AAE---RKSVSDYDCLVIPGGFSAGDYIR 65 (261)
T ss_pred CCEEEEEeCCCCCCHH--HHHHHHHHCCCcEEEEeeccc------------ccc---ccchhhCCEEEECCCCCcccccc
Confidence 5799999999997332 447999999999999886531 000 01123799999999953223232
Q ss_pred CC--------hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037 164 DC--------EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202 (472)
Q Consensus 164 ~~--------~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~ 202 (472)
.. +.+.+.|+++.+++|+|.+||.|.+ +|+++|+|.|.
T Consensus 66 ~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg~ 111 (261)
T PRK01175 66 AGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPGF 111 (261)
T ss_pred cchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCCC
Confidence 22 2344788999999999999999765 89999999873
No 57
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.87 E-value=2.5e-08 Score=94.73 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--
Q 012037 288 PRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-- 364 (472)
Q Consensus 288 ~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-- 364 (472)
|||+|+.++|.+ +.|+. +.|+.+|+++.++..... . + +++|+|+||||....+.
T Consensus 1 ~~v~Vl~~~G~n~~~~~~---~al~~~G~~~~~i~~~~~---------------~---l--~~~d~lilpGG~~~~d~~~ 57 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTV---YALRLLGVDAEIVWYEDG---------------S---L--PDYDGVVLPGGFSYGDYLR 57 (227)
T ss_pred CeEEEEeCCCcCcHHHHH---HHHHHCCCeEEEEecCCC---------------C---C--CCCCEEEECCCCccccccc
Confidence 589999999875 67774 888889999888854321 1 2 46899999998632221
Q ss_pred ---ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCc
Q 012037 365 ---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK 404 (472)
Q Consensus 365 ---~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~ 404 (472)
+..+..+.++|+++.+++++|.+||.|..+|+++|+|.|.
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 58 AGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred ccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 2335668899999999999999999999999999999984
No 58
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.79 E-value=5.5e-08 Score=79.71 Aligned_cols=92 Identities=30% Similarity=0.445 Sum_probs=77.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 369 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 369 (472)
|++++++++...++..+.+.|+.+++++++++.+++ ...+ .. ...+||++++|||.........+.
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-----------~~--~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-----------DV--DLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-----------cC--ChhccCEEEECCCCCchhhhccCH
Confidence 578899999999999999999999999999999986 4433 12 236899999999874333333478
Q ss_pred HHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037 370 ILKKLLKEQKVAGRIYGAVCSSPIVL 395 (472)
Q Consensus 370 ~l~~~L~~~~~~g~~v~aic~G~~lL 395 (472)
.+++|++++..++++++++|.|..+|
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHhH
Confidence 99999999999999999999999999
No 59
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.75 E-value=6.6e-08 Score=83.42 Aligned_cols=163 Identities=24% Similarity=0.304 Sum_probs=105.8
Q ss_pred CcEEEEEe-----CCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---ccCCce--------ee-------eCCCcC
Q 012037 84 PKKVLVPV-----GFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---ASSGTR--------LV-------ADTSIS 140 (472)
Q Consensus 84 ~~kV~ill-----~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~~~G~~--------v~-------~d~~~~ 140 (472)
||||++++ +||.+..|-...+-.+.+.|.++....|+.. ... --.|.. ++ --..+.
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~-Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~ 79 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQ-QVHVINHLTGEAMPETRNVLVESARIARGEIRPLA 79 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCch-hhhhhhhccccccchhhhHHHHHHHHhhccccchh
Confidence 58999987 6788888888888889999999999999863 211 111111 11 012445
Q ss_pred CCCCCcccEEEEcCCccccccccC----------ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceee--cCc
Q 012037 141 NCSHQVFDLIALPGGMPGSVRLRD----------CEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQIT--CHP 208 (472)
Q Consensus 141 ~~~~~~~D~vivpGG~~~~~~l~~----------~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T--~~~ 208 (472)
+.++++||++++|||++...++.+ ++++....+.+++.||+++-+|-+++++----|. +.+.| ...
T Consensus 80 ~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~--~~~~TIGnD~ 157 (217)
T COG3155 80 QADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF--PLRLTIGNDI 157 (217)
T ss_pred hcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC--ceeEEecCCc
Confidence 556779999999999876655433 5899999999999999999999998843222332 22333 233
Q ss_pred chhccCCC--Ccccc---CcEEE--eCCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037 209 AFTDKLPT--FWAVK---SNIHV--SGEVTTSRGPGTSFEFALCLVEQLFGE 253 (472)
Q Consensus 209 ~~~~~l~~--~~~~~---~~~v~--Dg~iiTa~g~~~~~dlal~li~~~~g~ 253 (472)
.-.+.+++ ...++ +.+|. +++++|. .+.-++..+-+.-.|-
T Consensus 158 dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtT----PAYMLA~~IaeAAsGI 205 (217)
T COG3155 158 DTAEALEEMGAEHVPCPVDDIVVDEDNKVVTT----PAYMLAQNIAEAASGI 205 (217)
T ss_pred cHHHHHHHhCcccCCCCccceeecCCCceecC----hHHHHHHHHHHHHhhH
Confidence 44445544 22222 33444 4678884 3455566665555444
No 60
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.66 E-value=2.4e-07 Score=87.99 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=72.1
Q ss_pred cEEEEEeCCCCc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc---
Q 012037 85 KKVLVPVGFGTE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--- 160 (472)
Q Consensus 85 ~kV~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--- 160 (472)
+||+|+.++|.. +.++ .++|+++|+++.++..... +. .+||+|+||||....+
T Consensus 1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------~l--~~~d~lilpGG~~~~d~~~ 57 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------SL--PDYDGVVLPGGFSYGDYLR 57 (227)
T ss_pred CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------CC--CCCCEEEECCCCccccccc
Confidence 489999999875 4555 5888899999988854321 01 2699999999953221
Q ss_pred --cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037 161 --RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202 (472)
Q Consensus 161 --~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~ 202 (472)
.+..+..+.++|+++.+.+++|.+||.| ..+|+++|+|+|.
T Consensus 58 ~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G-~QlLa~~GlL~G~ 100 (227)
T TIGR01737 58 AGAIAAASPIMQEVREFAEKGVPVLGICNG-FQILVEAGLLPGA 100 (227)
T ss_pred ccchhcchHHHHHHHHHHHcCCEEEEECHH-HHHHHHcCCCCCc
Confidence 1233567889999999999999999996 5589999999883
No 61
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.62 E-value=3.4e-07 Score=74.87 Aligned_cols=92 Identities=32% Similarity=0.348 Sum_probs=74.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE 166 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~ 166 (472)
|++++.+++...++..+.+.|+++++++++++...+ .... .....+||+|++|||.........+.
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCC-ceec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence 578999999999999999999999999999999976 4433 12234799999999853333232468
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHhh
Q 012037 167 ILKKITSKQAEEKRLYGAICAAPAVTL 193 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~~~lL 193 (472)
.+++|++++.+++++++++|.| .+++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g-~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLG-AQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECch-hHhH
Confidence 9999999999999999999996 4445
No 62
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.51 E-value=1.1e-06 Score=81.12 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=74.3
Q ss_pred CCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
++||+|+.+||. ++.|....++ ++|++...+-.+.. .+. .+||+|++|||.--.+.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~---~aG~~~~~V~~~d~---------------~~~----~~~d~vv~pGGFSyGDyL 59 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFE---RAGFEAEDVWHSDL---------------LLG----RDFDGVVLPGGFSYGDYL 59 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHH---HcCCCceEEEeeec---------------ccC----CCccEEEEcCCCCccccc
Confidence 589999999997 7888876655 78888877755432 111 169999999996322322
Q ss_pred -----cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCC
Q 012037 366 -----QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 403 (472)
Q Consensus 366 -----~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g 403 (472)
..-..+++-++++.++|+++.+||+|-.+|.++|||-|
T Consensus 60 r~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 60 RAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred CcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 23367888999999999999999999999999999999
No 63
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.49 E-value=7.5e-07 Score=82.07 Aligned_cols=96 Identities=25% Similarity=0.182 Sum_probs=73.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
++||+|+.++|..-. ...+.+|+++|+++..|..+.. . +.. +||+|++|||+.--+.|+
T Consensus 2 ~~kvaVi~fpGtN~d--~d~~~A~~~aG~~~~~V~~~d~-~--------------~~~----~~d~vv~pGGFSyGDyLr 60 (231)
T COG0047 2 RPKVAVLRFPGTNCD--YDMAAAFERAGFEAEDVWHSDL-L--------------LGR----DFDGVVLPGGFSYGDYLR 60 (231)
T ss_pred CceEEEEEcCCcCch--HHHHHHHHHcCCCceEEEeeec-c--------------cCC----CccEEEEcCCCCcccccC
Confidence 579999999997532 2446777899999988887642 1 000 699999999973323232
Q ss_pred -----CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCC
Q 012037 164 -----DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRR 201 (472)
Q Consensus 164 -----~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g 201 (472)
.-..+++-+++++++++++.+||+|-+ +|.++|||.|
T Consensus 61 ~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG 102 (231)
T COG0047 61 AGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG 102 (231)
T ss_pred cchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence 236788889999999999999999766 7889999999
No 64
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.46 E-value=9e-07 Score=82.47 Aligned_cols=92 Identities=26% Similarity=0.313 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQ 366 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~~ 366 (472)
|||+|++.+|+.......+.+.|+..|++++++..+. .+++ .+||.||+|||.... ..+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~-----------------~~~l--~~~d~iii~GG~~~~~~~~~ 61 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR-----------------PGDL--PDCDALIIPGGESTTIGRLM 61 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC-----------------hHHh--ccCCEEEECCCcHHHHHHHH
Confidence 4899999999999999999999999998888766542 1233 579999999996322 1222
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+..+.++|+++.+++++|.+||.|..+|+++
T Consensus 62 ~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred hhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 44467999999999999999999999999987
No 65
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.42 E-value=6.4e-07 Score=69.93 Aligned_cols=92 Identities=33% Similarity=0.478 Sum_probs=72.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 369 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 369 (472)
|+++.+++....++....+.+++.++++++++.... .... .....++|.+++|||.........+.
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~ 66 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE 66 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence 467778888777899999999999999999999886 3222 12236899999999874333322468
Q ss_pred HHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037 370 ILKKLLKEQKVAGRIYGAVCSSPIVL 395 (472)
Q Consensus 370 ~l~~~L~~~~~~g~~v~aic~G~~lL 395 (472)
.+++|++++..++++++++|.|+.++
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 67 ALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHHHHcCCEEEEEecccccC
Confidence 99999999999999999999998753
No 66
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.36 E-value=1.8e-06 Score=67.35 Aligned_cols=89 Identities=30% Similarity=0.336 Sum_probs=70.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE 166 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~ 166 (472)
|+++..++....++....+.|++.++.+++++.... .... ......||++++|||.........+.
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~lii~g~~~~~~~~~~~~ 66 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGG-PVES-------------DVDLDDYDGLILPGGPGTPDDLAWDE 66 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCC-cccc-------------cCCcccCCEEEECCCCcchhhhccCH
Confidence 467888888888889999999999999999998865 3222 12334799999999953333222468
Q ss_pred HHHHHHHHHHhcCCeEEEEchhh
Q 012037 167 ILKKITSKQAEEKRLYGAICAAP 189 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~ 189 (472)
...+|++++++++++|+++|.|.
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 67 ALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred HHHHHHHHHHHcCCEEEEEeccc
Confidence 99999999999999999999963
No 67
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.35 E-value=1.5e-06 Score=80.96 Aligned_cols=92 Identities=21% Similarity=0.169 Sum_probs=71.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-ccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RLR 163 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l~ 163 (472)
+||+||+..|+.......+.+.|+..|++++++..+.. ++.+ +||+|++|||..... .+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-----------------~~l~--~~d~iii~GG~~~~~~~~~ 61 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-----------------GDLP--DCDALIIPGGESTTIGRLM 61 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-----------------HHhc--cCCEEEECCCcHHHHHHHH
Confidence 48999999999999999999999999988887765421 1222 699999999943221 222
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+..+.++|+++++++++|.+||.|.. +|+.+
T Consensus 62 ~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~ 93 (200)
T PRK13527 62 KREGILDEIKEKIEEGLPILGTCAGLI-LLAKE 93 (200)
T ss_pred hhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 445679999999999999999999765 67776
No 68
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.35 E-value=1.2e-06 Score=79.19 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh--cc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE--RL 365 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~--~~ 365 (472)
+||+|+..+|.... -...|++.|+++.++.. .+++ ++||.|++|||. ... .+
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~-------------------~~~l--~~~D~LILPGG~-~t~~~~l 56 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKF-------------------NNDF--DSIDRLVIPGGE-STTLLNL 56 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECC-------------------HHHH--hCCCEEEECCCh-HHHHHHH
Confidence 78999999985443 56777788877655431 1233 578999999995 333 45
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHH----cCCCCC
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK----HGLLKA 403 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~----aGlL~g 403 (472)
.++..+.+.|+++.+ ++++.+||.|..+|++ .|+++|
T Consensus 57 l~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg 97 (179)
T PRK13526 57 LNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL 97 (179)
T ss_pred hhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence 556679999999875 7899999999999999 455554
No 69
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.30 E-value=1.6e-06 Score=74.94 Aligned_cols=163 Identities=25% Similarity=0.295 Sum_probs=106.3
Q ss_pred CCEEEEE-----eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc--e---ecC-----CCcEEe-------ecCCccc
Q 012037 287 MPRVLIP-----IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ--I---VAS-----QGVKII-------ADKSISD 344 (472)
Q Consensus 287 ~~~V~il-----~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~--v---~s~-----~G~~v~-------~d~~l~~ 344 (472)
|+||+++ +|||.+.-|-...+-.+.+.|.++..+.++..+. + ++. .++-+. --..+.+
T Consensus 1 mKkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hViNHlTGE~m~EtRNVLvEsARIaRG~i~~l~~ 80 (217)
T COG3155 1 MKKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHVINHLTGEAMPETRNVLVESARIARGEIRPLAQ 80 (217)
T ss_pred CceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhhhhhccccccchhhhHHHHHHHHhhccccchhh
Confidence 5788888 4799999999999999999999999999987410 1 111 011110 0123555
Q ss_pred cCCCcccEEEEcCCCcchhcc----------cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccC--hhh
Q 012037 345 AAESVYDLIILPGGVAGAERL----------QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAH--PSV 412 (472)
Q Consensus 345 ~~~~~~D~livpGG~~~~~~~----------~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~--~~~ 412 (472)
.++++||++|+|||.+....+ .-++++..+.+.+++.||+++-||.++.+|.+- +=.+-+.|.- ...
T Consensus 81 a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki-~g~~~~~TIGnD~dT 159 (217)
T COG3155 81 ADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKI-FGFPLRLTIGNDIDT 159 (217)
T ss_pred cCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHH-cCCceeEEecCCccH
Confidence 667899999999998655443 347899999999999999999999999999873 1123344432 334
Q ss_pred Hhhhhc---c---eecCCcEEE-CCCEEEcCChhhHHHHHHHHHHHhcC
Q 012037 413 IGKLTN---E---VVNGTKVVV-DGKVITSRGLANVIDFALAIVSKFFG 454 (472)
Q Consensus 413 ~~~l~~---~---~~~~~~vv~-dg~iiTa~g~~~~~d~al~li~~~~g 454 (472)
.+.+++ . -..+..+++ +++++|.. +.-++-.|-+.--|
T Consensus 160 a~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~IaeAAsG 204 (217)
T COG3155 160 AEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAEAASG 204 (217)
T ss_pred HHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHHHHhh
Confidence 444544 1 223333333 56788865 33344444444444
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.28 E-value=2.3e-06 Score=78.52 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=66.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcccc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQK 367 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~ 367 (472)
||+|+..+|-... ..+.|++.|+++++++... ++ +++|.|+||||.... ..+..
T Consensus 1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~~-------------------~l--~~~d~liipGG~~~~~~~l~~ 55 (184)
T TIGR03800 1 KIGVLALQGAVRE----HARALEALGVEGVEVKRPE-------------------QL--DEIDGLIIPGGESTTLSRLLD 55 (184)
T ss_pred CEEEEEccCCHHH----HHHHHHHCCCEEEEECChH-------------------Hh--ccCCEEEECCCCHHHHHHHHH
Confidence 5899999885444 5589999999988775421 23 568999999996322 12334
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+..+.++|+++.++++++.+||.|..+|++.
T Consensus 56 ~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 56 KYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred hccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 5568899999999999999999999999988
No 71
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.22 E-value=2.5e-06 Score=77.08 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--cc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--RL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--~l 162 (472)
.||+||...|.... -..+|++.|+++.++... ++.. +||.|++||| .... .+
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-------------------~~l~--~~D~LILPGG-~~t~~~~l 56 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-------------------NDFD--SIDRLVIPGG-ESTTLLNL 56 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-------------------HHHh--CCCEEEECCC-hHHHHHHH
Confidence 68999999995444 578888888876555422 1122 6999999999 4444 45
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
..+..+.+.|+++.+ +|++++||.|.. +|++
T Consensus 57 l~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~ 87 (179)
T PRK13526 57 LNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK 87 (179)
T ss_pred hhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence 566679999999885 789999999865 6877
No 72
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.17 E-value=3.7e-06 Score=77.15 Aligned_cols=85 Identities=18% Similarity=0.050 Sum_probs=64.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-ccccC
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRLRD 164 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~~l~~ 164 (472)
||+||...|-... .++.|++.|+++.++++.. +.+ +||+++||||.... ..+..
T Consensus 1 ~igvl~~qg~~~e----~~~~l~~~g~~~~~v~~~~-------------------~l~--~~d~liipGG~~~~~~~l~~ 55 (184)
T TIGR03800 1 KIGVLALQGAVRE----HARALEALGVEGVEVKRPE-------------------QLD--EIDGLIIPGGESTTLSRLLD 55 (184)
T ss_pred CEEEEEccCCHHH----HHHHHHHCCCEEEEECChH-------------------Hhc--cCCEEEECCCCHHHHHHHHH
Confidence 6899999985443 5699999999988886521 122 69999999995322 12344
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+..+.++|+++++++++|.+||.|.. +|++.
T Consensus 56 ~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~ 86 (184)
T TIGR03800 56 KYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE 86 (184)
T ss_pred hccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence 56788999999999999999999755 78877
No 73
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.11 E-value=9.1e-06 Score=78.29 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=67.4
Q ss_pred CEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc-
Q 012037 288 PRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL- 365 (472)
Q Consensus 288 ~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~- 365 (472)
+||+|+.++|. ++.|+ +.+|+.+|++++.+..+. ... .+....+||+|++|||....+.+
T Consensus 2 pkV~Vl~~pGtNce~e~---~~A~~~aG~~~~~v~~~d--l~~-------------~~~~l~~~~~lvipGGFS~gD~l~ 63 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERET---AAAFENAGFEPEIVHIND--LLS-------------GESDLDDFDGLVIPGGFSYGDYLR 63 (259)
T ss_dssp -EEEEEE-TTEEEHHHH---HHHHHCTT-EEEEEECCH--HHT-------------TS--GCC-SEEEE-EE-GGGGTTS
T ss_pred CEEEEEECCCCCCHHHH---HHHHHHcCCCceEEEEEe--ccc-------------ccCchhhCcEEEECCccCccccch
Confidence 68999999996 66666 456778999999886542 000 01123789999999986433332
Q ss_pred ---------cccHHHHHHHHHHHHc-CCeEEEEchhHHHHHHcCCCCC
Q 012037 366 ---------QKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKA 403 (472)
Q Consensus 366 ---------~~~~~l~~~L~~~~~~-g~~v~aic~G~~lLA~aGlL~g 403 (472)
..+..+++.|++|.++ ++.+.+||+|-.+|.++|||.|
T Consensus 64 sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~ 111 (259)
T PF13507_consen 64 SGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPG 111 (259)
T ss_dssp TTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence 2235568889999988 9999999999999999999998
No 74
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.08 E-value=1.1e-05 Score=74.98 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcccccHHHHHHHHHHHHc
Q 012037 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQKSRILKKLLKEQKVA 381 (472)
Q Consensus 304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~~~~~~l~~~L~~~~~~ 381 (472)
.--.+.|+++|+++.++++..+ +++ .++|+||+|||... ...+.++..+.+.|+++.++
T Consensus 14 ~e~~~~l~~~G~~v~~~s~~~~-----------------~~l--~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~ 74 (198)
T cd03130 14 PENLELLEAAGAELVPFSPLKD-----------------EEL--PDADGLYLGGGYPELFAEELSANQSMRESIRAFAES 74 (198)
T ss_pred HHHHHHHHHCCCEEEEECCCCC-----------------CCC--CCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3446788899999998876432 122 34899999999632 24566667899999999999
Q ss_pred CCeEEEEchhHHHHHHcC
Q 012037 382 GRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 382 g~~v~aic~G~~lLA~aG 399 (472)
|++|.+||.|..+|++.-
T Consensus 75 g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 75 GGPIYAECGGLMYLGESL 92 (198)
T ss_pred CCCEEEEcccHHHHHHHh
Confidence 999999999999998753
No 75
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.03 E-value=4.1e-05 Score=73.05 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=70.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER- 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~- 364 (472)
+|++|+|+-...++... .+.+.|+..|++++++....+ +....+. .+||.|||+||..+...
T Consensus 1 ~m~~ilviqh~~~e~~g--~i~~~L~~~g~~~~v~~~~~~-------------~~~~~~~--~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLG--SFEQVLGARGYRVRYVDVGVD-------------DLETLDA--LEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred CCceEEEEECCCCCCCh--HHHHHHHHCCCeEEEEecCCC-------------ccCCCCc--cCCCEEEECCCCCCCCCC
Confidence 57888888666555444 478999999999998876543 1111222 57999999998643322
Q ss_pred --ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 --LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 --~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..--..++++|+++.+.++++.+||-|..+|+++
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 1223578899999999999999999999999976
No 76
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.01 E-value=2.7e-05 Score=72.57 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=66.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+||+|+=+.+-+. ....+.|+.+|+++.+++. ..++ ++||.|++|||....+.+..
T Consensus 1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~-------------------~~~~--~~~d~iii~G~~~~~~~~~~ 56 (200)
T PRK13143 1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSD-------------------PEEI--LDADGIVLPGVGAFGAAMEN 56 (200)
T ss_pred CeEEEEECCCccH---HHHHHHHHHCCCeEEEECC-------------------HHHH--ccCCEEEECCCCCHHHHHHH
Confidence 5788888876655 4558889999999887731 1233 57999999996422233444
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+.+.++|+++.++++++.+||.|..+|+++
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 5678899999999999999999999999985
No 77
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.00 E-value=4.9e-05 Score=72.61 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-cc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ 366 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-~~ 366 (472)
|||+|+....++..+.. .+.++.+|+++++.....+. .+ ..+. .+||+|||.||..+... ..
T Consensus 1 m~i~vi~h~~~e~~g~~--~~~~~~~g~~~~~~~~~~g~--------~~-----p~~~--~~~d~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 1 MRVHFIIHESFEAPGAY--LKWAENRGYDISYSRVYAGE--------AL-----PENA--DGFDLLIVMGGPQSPRTTRE 63 (235)
T ss_pred CeEEEEecCCCCCchHH--HHHHHHCCCeEEEEEccCCC--------CC-----CCCc--cccCEEEECCCCCChhhccc
Confidence 57999998899888765 56668899888886554330 11 1122 57999999999643221 11
Q ss_pred cc-----HHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KS-----RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~-----~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.. ....+||+++.+.+++|.+||.|..+|+++
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 11 466899999999999999999999999976
No 78
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.99 E-value=2.8e-05 Score=71.69 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~ 365 (472)
||+|+|+...|-...- .+.|+.+++++.+++.. +++ ++||.|++|||.... +.+
T Consensus 1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l--~~~dgiii~GG~~~~~~~~ 55 (189)
T PRK13525 1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDL--DEIDGLILPGGESTTMGKL 55 (189)
T ss_pred CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHh--ccCCEEEECCCChHHHHHH
Confidence 4689999888754422 46688888888776421 123 579999999996322 123
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+..+.++++++.+++++|.+||.|..+|+++
T Consensus 56 ~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 56 LRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred HHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 344567899999999999999999999999983
No 79
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=97.97 E-value=2.9e-05 Score=74.85 Aligned_cols=100 Identities=22% Similarity=0.225 Sum_probs=66.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
.||+|+.++|..-.. ....+|+.+|++++.|..+. .... +....+||+|++|||+..-+.+..
T Consensus 2 pkV~Vl~~pGtNce~--e~~~A~~~aG~~~~~v~~~d--l~~~-------------~~~l~~~~~lvipGGFS~gD~l~s 64 (259)
T PF13507_consen 2 PKVAVLRFPGTNCER--ETAAAFENAGFEPEIVHIND--LLSG-------------ESDLDDFDGLVIPGGFSYGDYLRS 64 (259)
T ss_dssp -EEEEEE-TTEEEHH--HHHHHHHCTT-EEEEEECCH--HHTT-------------S--GCC-SEEEE-EE-GGGGTTST
T ss_pred CEEEEEECCCCCCHH--HHHHHHHHcCCCceEEEEEe--cccc-------------cCchhhCcEEEECCccCccccchH
Confidence 589999999976432 45789999999999887552 1100 012337999999999743333322
Q ss_pred ----------ChHHHHHHHHHHhc-CCeEEEEchhhHHhhhcCCCCCCc
Q 012037 165 ----------CEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRK 202 (472)
Q Consensus 165 ----------~~~~~~~l~~~~~~-~k~I~aic~g~~~lLa~aGlL~g~ 202 (472)
++.+.+-|++++++ ++.+.+||+| .-+|.++|||.+.
T Consensus 65 g~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNG-fQiL~~~Gllp~~ 112 (259)
T PF13507_consen 65 GAIAAARLLFNSPLMDAIREFLERPGGFVLGICNG-FQILVELGLLPGG 112 (259)
T ss_dssp THHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHH-HHHHCCCCCSTT-
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchH-hHHHHHhCcCCCc
Confidence 34567888999999 9999999996 5589999999883
No 80
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.85 E-value=4.6e-05 Score=70.87 Aligned_cols=78 Identities=21% Similarity=0.108 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--cccccCChHHHHHHHHHHh
Q 012037 100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRLRDCEILKKITSKQAE 177 (472)
Q Consensus 100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l~~~~~~~~~l~~~~~ 177 (472)
+..-++.|+++|+++.++++..+ ++.+ ++|+|++|||... ...+.++..+.+.|+++.+
T Consensus 13 y~e~~~~l~~~G~~v~~~s~~~~-----------------~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~ 73 (198)
T cd03130 13 YPENLELLEAAGAELVPFSPLKD-----------------EELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAE 73 (198)
T ss_pred cHHHHHHHHHCCCEEEEECCCCC-----------------CCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHH
Confidence 45567889999999999886422 1233 4999999999533 3456666789999999999
Q ss_pred cCCeEEEEchhhHHhhhcCC
Q 012037 178 EKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 178 ~~k~I~aic~g~~~lLa~aG 197 (472)
++++|.+||.|.+ +|.+..
T Consensus 74 ~g~pilgICgG~q-lL~~~~ 92 (198)
T cd03130 74 SGGPIYAECGGLM-YLGESL 92 (198)
T ss_pred cCCCEEEEcccHH-HHHHHh
Confidence 9999999999755 677653
No 81
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.83 E-value=0.00011 Score=70.20 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=66.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-cc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LR 163 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-l~ 163 (472)
|||.|+....++..+. +.+.++++|+++++.....|.+ + .. +..+||+|||.||..+... ..
T Consensus 1 m~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g~~--------~------p~-~~~~~d~vii~GGp~~~~~~~~ 63 (235)
T PRK08250 1 MRVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAGEA--------L------PE-NADGFDLLIVMGGPQSPRTTRE 63 (235)
T ss_pred CeEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCCCC--------C------CC-CccccCEEEECCCCCChhhccc
Confidence 5799999888887765 4667788999988866553311 1 10 1237999999999433221 11
Q ss_pred CC-----hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DC-----EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~-----~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.. ....+||+++++++++|.+||.|.. +|+.+
T Consensus 64 ~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 100 (235)
T PRK08250 64 ECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA 100 (235)
T ss_pred cccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 22 3668999999999999999999876 66665
No 82
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.82 E-value=6.2e-05 Score=69.46 Aligned_cols=87 Identities=18% Similarity=0.061 Sum_probs=62.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-ccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-VRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~~l 162 (472)
++||+|++..|-...- ++.|+..|+++.++++. .+.+ +||+|++|||.... ..+
T Consensus 1 ~m~~~i~~~~g~~~~~----~~~l~~~g~~~~~~~~~-------------------~~l~--~~dgiii~GG~~~~~~~~ 55 (189)
T PRK13525 1 MMKIGVLALQGAVREH----LAALEALGAEAVEVRRP-------------------EDLD--EIDGLILPGGESTTMGKL 55 (189)
T ss_pred CCEEEEEEcccCHHHH----HHHHHHCCCEEEEeCCh-------------------hHhc--cCCEEEECCCChHHHHHH
Confidence 4689999998754332 46688899888777531 1222 69999999995322 123
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.++++++++++++|.+||.|.. +|+.+
T Consensus 56 ~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~ 88 (189)
T PRK13525 56 LRDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE 88 (189)
T ss_pred HHhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 3455677999999999999999999765 67763
No 83
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.78 E-value=7.6e-05 Score=71.23 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=64.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-hhcc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~~~~ 365 (472)
||||+|+..+|-.. ...+.|+++|.++.+++.. +++ .++|.||+|||... ...+
T Consensus 1 ~m~igVLa~qG~~~----e~~~aL~~lG~ev~~v~~~-------------------~~L--~~~DgLILPGGfs~~~~~L 55 (248)
T PLN02832 1 MMAIGVLALQGSFN----EHIAALRRLGVEAVEVRKP-------------------EQL--EGVSGLIIPGGESTTMAKL 55 (248)
T ss_pred CcEEEEEeCCCchH----HHHHHHHHCCCcEEEeCCH-------------------HHh--ccCCEEEeCCCHHHHHHHH
Confidence 57999999998533 2358888888877655442 234 56899999998632 2233
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....+.+.|+++.++|+++.++|.|..+|++.
T Consensus 56 ~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 56 AERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred HhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 334468889999989999999999999999875
No 84
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.72 E-value=0.00015 Score=75.99 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~ 364 (472)
..+|+|.-.+-|+.. +-.=++.|+..+.++.++++-.. +++ .++|+|++|||... ...
T Consensus 245 ~~~iava~d~af~f~-y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l--~~~D~lilpGG~~~~~~~~ 304 (451)
T PRK01077 245 GVRIAVARDAAFNFY-YPENLELLRAAGAELVFFSPLAD-----------------EAL--PDCDGLYLGGGYPELFAAE 304 (451)
T ss_pred CceEEEEecCccccc-HHHHHHHHHHCCCEEEEeCCcCC-----------------CCC--CCCCEEEeCCCchhhHHHH
Confidence 368999988855544 22234778888899988876432 122 46899999999743 355
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus 305 l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 305 LAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred HhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 6777889999999999999999999999998853
No 85
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.72 E-value=0.00019 Score=66.09 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=66.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCC---CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch--h
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--E 363 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~---~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~--~ 363 (472)
||+|+..+.... .....+.|+.++ ++++++-...+ + ...+. .+||.|+++||.... .
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-------------~-~~~~~--~~~dgvil~Gg~~~~~~~ 62 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-------------E-LLPDL--DDYDGLVILGGPMSVDED 62 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-------------C-CCCCc--ccCCEEEECCCCccCCcc
Confidence 467776665544 667778888887 67777665543 1 02233 679999999997433 1
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....+.+.++|+.+.++++++.+||.|..+|+.+
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 63 DYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 12223678999999999999999999999999875
No 86
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.71 E-value=0.00013 Score=67.62 Aligned_cols=86 Identities=24% Similarity=0.215 Sum_probs=62.4
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc-
Q 012037 290 VLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK- 367 (472)
Q Consensus 290 V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~- 367 (472)
|+++.|++. +. ..+...+...|++++++++..+ . .++|.|++|||......+..
T Consensus 1 ~~~~~y~~~gN~---~~l~~~~~~~G~~~~~~~~~~~-------------------~--~~~d~lilpGg~~~~~~~~~~ 56 (194)
T cd01750 1 IAVIRYPDISNF---TDLDPLAREPGVDVRYVEVPEG-------------------L--GDADLIILPGSKDTIQDLAWL 56 (194)
T ss_pred CEeecCCCccCH---HHHHHHHhcCCceEEEEeCCCC-------------------C--CCCCEEEECCCcchHHHHHHH
Confidence 467777643 44 3445666678889988876541 2 56899999999632222222
Q ss_pred -cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 368 -SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 368 -~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
+..+.+.|+++.++|++|.+||.|..+|++.-
T Consensus 57 ~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 57 RKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 44688999999999999999999999998764
No 87
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.67 E-value=0.00012 Score=68.27 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=62.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
+||.|+=+.+-+. ....+.|+++|+++.+++.. .+.+ +||+|++|||......+..
T Consensus 1 ~~~~v~~~~~~~~---~~~~~~l~~~G~~~~~~~~~-------------------~~~~--~~d~iii~G~~~~~~~~~~ 56 (200)
T PRK13143 1 MMIVIIDYGVGNL---RSVSKALERAGAEVVITSDP-------------------EEIL--DADGIVLPGVGAFGAAMEN 56 (200)
T ss_pred CeEEEEECCCccH---HHHHHHHHHCCCeEEEECCH-------------------HHHc--cCCEEEECCCCCHHHHHHH
Confidence 4788887765443 55689999999998887410 1122 6999999996322222334
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+.+.++|+++.++++++.+||.|.. +|+++
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~ 87 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGMQ-LLFES 87 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 46788999999999999999999755 78875
No 88
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.59 E-value=0.00016 Score=68.99 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=63.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~l 162 (472)
|+||+||...|-. ....++|++.|+++.+++.. ++.. .+|.||+|||... ...+
T Consensus 1 ~m~igVLa~qG~~----~e~~~aL~~lG~ev~~v~~~-------------------~~L~--~~DgLILPGGfs~~~~~L 55 (248)
T PLN02832 1 MMAIGVLALQGSF----NEHIAALRRLGVEAVEVRKP-------------------EQLE--GVSGLIIPGGESTTMAKL 55 (248)
T ss_pred CcEEEEEeCCCch----HHHHHHHHHCCCcEEEeCCH-------------------HHhc--cCCEEEeCCCHHHHHHHH
Confidence 4689999999853 33368888888887666542 1233 6899999998632 2334
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.....+.+.|+++.+.|++|.++|.| ..+|++.
T Consensus 56 ~~~~gl~~~I~~~v~~g~PvLGiC~G-mqlLa~~ 88 (248)
T PLN02832 56 AERHNLFPALREFVKSGKPVWGTCAG-LIFLAER 88 (248)
T ss_pred HhhcchHHHHHHHHHcCCCEEEEChh-HHHHHHH
Confidence 44446888999998999999999996 4477776
No 89
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.58 E-value=0.00072 Score=64.51 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=66.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc-
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL- 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l- 162 (472)
|++|.|+--...+. ...+.+.|++.|++++++....+ . .. ..+. .+||+|||+||..+...-
T Consensus 2 m~~ilviqh~~~e~--~g~i~~~L~~~g~~~~v~~~~~~-~--------~~----~~~~--~~~d~lii~Ggp~~~~d~~ 64 (234)
T PRK07053 2 MKTAVAIRHVAFED--LGSFEQVLGARGYRVRYVDVGVD-D--------LE----TLDA--LEPDLLVVLGGPIGVYDDE 64 (234)
T ss_pred CceEEEEECCCCCC--ChHHHHHHHHCCCeEEEEecCCC-c--------cC----CCCc--cCCCEEEECCCCCCCCCCC
Confidence 67887776655544 44579999999999998876543 1 10 1112 269999999984333221
Q ss_pred --cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 --RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 --~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.--..+.++|+++.+.++++.+||-|.. +|+++
T Consensus 65 ~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 99 (234)
T PRK07053 65 LYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA 99 (234)
T ss_pred cCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 1224788999999999999999999866 67765
No 90
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.55 E-value=0.00067 Score=64.95 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER- 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~- 364 (472)
.++||+|+.-.+++.... +.+.|+..|++++++.+..+ +...+++ ++||.+||.||......
T Consensus 6 ~~~~vlvi~h~~~~~~g~--l~~~l~~~g~~~~v~~~~~~-------------~~~p~~l--~~~dgvii~Ggp~~~~d~ 68 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGR--VGQLLQERGYPLDIRRPRLG-------------DPLPDTL--EDHAGAVIFGGPMSANDP 68 (239)
T ss_pred CCceEEEEecCCCCCChH--HHHHHHHCCCceEEEeccCC-------------CCCCCcc--cccCEEEEECCCCCCCCC
Confidence 578999997777665554 68899999999988866543 1011233 57999999998743322
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..-...+++||+++.+.++++.+||-|..+|+++
T Consensus 69 ~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 69 DDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred chHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 1112457899999999999999999999999987
No 91
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.53 E-value=0.00024 Score=65.15 Aligned_cols=85 Identities=26% Similarity=0.300 Sum_probs=63.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-ccccc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RLQKS 368 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~~~~ 368 (472)
|+|++.+|....-. +.|++.++++..++... +. +++|.+|+|||..... ....+
T Consensus 1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~ 55 (183)
T cd01749 1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR 55 (183)
T ss_pred CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence 56777777554332 89999999998886631 12 5689999999863211 12234
Q ss_pred HHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 369 RILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 369 ~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
..+.++|+++.++++++.++|.|..+|+++-
T Consensus 56 ~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~ 86 (183)
T cd01749 56 TGLLDPLREFIRAGKPVFGTCAGLILLAKEV 86 (183)
T ss_pred CCHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 5678999999999999999999999998753
No 92
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.53 E-value=0.00026 Score=66.23 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=60.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc--c
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ--K 367 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~--~ 367 (472)
|+|+-+.+-+ ...+.+.|++.|++++++.. .+++ .+||.||||||........ .
T Consensus 2 i~~~d~~~~~---~~~i~~~l~~~G~~v~~~~~-------------------~~~l--~~~d~iiipG~~~~~~~~~~~~ 57 (205)
T PRK13141 2 IAIIDYGMGN---LRSVEKALERLGAEAVITSD-------------------PEEI--LAADGVILPGVGAFPDAMANLR 57 (205)
T ss_pred EEEEEcCCch---HHHHHHHHHHCCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHHH
Confidence 4555555433 36678999999998887521 1233 5799999999642122111 1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
...+.++|+++.++++++.+||.|..+|++.
T Consensus 58 ~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 58 ERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred HcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 2357899999999999999999999999986
No 93
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.51 E-value=0.00036 Score=65.44 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC-Ccc--hh
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAG--AE 363 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG-~~~--~~ 363 (472)
|++|+|+-|..-+..++ .+.|++.|+++.++... +++ .++|.||+||+ ... ..
T Consensus 1 ~~~v~iid~~~GN~~sl---~~al~~~g~~v~vv~~~-------------------~~l--~~~d~iIlPG~g~~~~~~~ 56 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSV---SRAIQQAGQQPCIINSE-------------------SEL--AQVHALVLPGVGSFDLAMK 56 (210)
T ss_pred CcEEEEEEcCCccHHHH---HHHHHHcCCcEEEEcCH-------------------HHh--hhCCEEEECCCCchHHHHH
Confidence 56899999986666544 67777889988877421 123 45899999994 311 11
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc---------CCCCCcee
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH---------GLLKAKKA 406 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a---------GlL~g~~~ 406 (472)
.+ ++..+.+.|+++.++++++.+||-|-.+|++. |+++|+-.
T Consensus 57 ~l-~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~ 107 (210)
T CHL00188 57 KL-EKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVK 107 (210)
T ss_pred HH-HHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEE
Confidence 12 12246678888888999999999999999985 56777543
No 94
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.49 E-value=0.00039 Score=72.98 Aligned_cols=91 Identities=19% Similarity=0.127 Sum_probs=67.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--cccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l 162 (472)
.||+|.-.+-|+. .+..=.+.|++.|.++.++++-.. ++.+ +||+|++|||... ...+
T Consensus 246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------~~l~--~~D~lilpGG~~~~~~~~l 305 (451)
T PRK01077 246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------EALP--DCDGLYLGGGYPELFAAEL 305 (451)
T ss_pred ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC--CCCEEEeCCCchhhHHHHH
Confidence 5899998774433 344446888888999988876421 1223 6999999999643 3456
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.+.|+++.++|++|.++|.|.. +|++.
T Consensus 306 ~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~~ 338 (451)
T PRK01077 306 AANTSMRASIRAAAAAGKPIYAECGGLM-YLGES 338 (451)
T ss_pred hhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence 6778899999999999999999999754 56654
No 95
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.46 E-value=0.00027 Score=63.19 Aligned_cols=86 Identities=28% Similarity=0.305 Sum_probs=61.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCC-CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-hhcc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL 365 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~-~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~~~~ 365 (472)
|||+|+.+.|--.. =.+.+++++ .++. .-+..+|+ ++.|.||||||--. ..++
T Consensus 1 m~IGVLalQG~v~E----H~~~l~~~~~~e~~-------------------~Vk~~~dL--~~~d~LIiPGGESTTi~rL 55 (194)
T COG0311 1 MKIGVLALQGAVEE----HLEALEKAGGAEVV-------------------EVKRPEDL--EGVDGLIIPGGESTTIGRL 55 (194)
T ss_pred CeEEEEEecccHHH----HHHHHHhhcCCceE-------------------EEcCHHHh--ccCcEEEecCccHHHHHHH
Confidence 57899998874333 345566664 2222 22234555 67899999999521 2345
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+...+.+-|+++..+|+++.+.|+|..+||+-
T Consensus 56 ~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 56 LKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 666788999999999999999999999999973
No 96
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.46 E-value=0.00034 Score=64.86 Aligned_cols=87 Identities=20% Similarity=0.077 Sum_probs=60.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC--
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD-- 164 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~-- 164 (472)
|+++.+++.. -+..+...++..|++++++++..+ . .++|+|++|||......+..
T Consensus 1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~~-------------------~--~~~d~lilpGg~~~~~~~~~~~ 57 (194)
T cd01750 1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPEG-------------------L--GDADLIILPGSKDTIQDLAWLR 57 (194)
T ss_pred CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCCC-------------------C--CCCCEEEECCCcchHHHHHHHH
Confidence 4566665432 235557777788999988886631 1 26899999999522222222
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
+..+.+.|+++.+++++|.+||.|.. +|++.-
T Consensus 58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~~ 89 (194)
T cd01750 58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKYI 89 (194)
T ss_pred HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhhc
Confidence 44688999999999999999999755 676653
No 97
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.45 E-value=0.00073 Score=62.16 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=63.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCC---CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc-c-
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAG---AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS-V- 160 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag---~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~-~- 160 (472)
||+|+..+.... .....+.|+++| ++++++-...+ .. ..+. .+||+|+++||.... .
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-~~-------------~~~~--~~~dgvil~Gg~~~~~~~ 62 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-EL-------------LPDL--DDYDGLVILGGPMSVDED 62 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-CC-------------CCCc--ccCCEEEECCCCccCCcc
Confidence 577887776554 566778888887 67776665543 10 1222 379999999995433 1
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.....+.+.++|+++.++++++.+||.|.. +|+.+
T Consensus 63 ~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~ 97 (188)
T cd01741 63 DYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA 97 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 122236788999999999999999999765 66654
No 98
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.44 E-value=0.0011 Score=76.36 Aligned_cols=107 Identities=17% Similarity=0.357 Sum_probs=76.9
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEee-cCCc-cccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIA-DKSI-SDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~-d~~l-~~~~~~~~D~livpGG~~~~ 362 (472)
..+||+|+.+||. ++.|...+++ ++|+++.++....- ... .+.. -..+ .++ .+||+|++|||....
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~---~aG~~~~~v~~~dl--~~~----~i~~s~~~~~~~l--~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFE---KEGAEVNLVIFRNL--NEE----ALVESVETMVDEI--DKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH---HcCCceEEEEEecC--ccc----ccccchhhhhccc--ccCcEEEEcCccCcc
Confidence 4589999999996 7888776655 59988877765431 000 0000 0011 223 689999999986322
Q ss_pred hc----------ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCC
Q 012037 363 ER----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKA 403 (472)
Q Consensus 363 ~~----------~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g 403 (472)
+. +..++.+.+-+++|.++++.+.+||+|-.+|.+.|||-+
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~ 1095 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPY 1095 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcC
Confidence 22 244678899999999999999999999999999999975
No 99
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.35 E-value=0.00036 Score=64.02 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=61.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cccCC
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RLRDC 165 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l~~~ 165 (472)
|+||+..|....-. +.|++.|+++..+.+.. +. .++|.+++|||..... ....+
T Consensus 1 igvl~~qg~~~e~~----~~l~~~g~~v~~v~~~~-------------------~l--~~~dgiii~Gg~~~~~~~~~~~ 55 (183)
T cd01749 1 IGVLALQGDFREHI----RALERLGVEVIEVRTPE-------------------DL--EGIDGLIIPGGESTTIGKLLRR 55 (183)
T ss_pred CEEEEecCCcHHHH----HHHHHCCCeEEEECCHH-------------------Hh--ccCCEEEECCchHHHHHHHHHh
Confidence 57888887665333 89999999998887631 12 2699999999953211 12244
Q ss_pred hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 166 EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+.++|++++++++++.++|.|.. +|+++
T Consensus 56 ~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~ 85 (183)
T cd01749 56 TGLLDPLREFIRAGKPVFGTCAGLI-LLAKE 85 (183)
T ss_pred CCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 5678999999999999999999754 67764
No 100
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.32 E-value=0.00096 Score=62.55 Aligned_cols=88 Identities=26% Similarity=0.296 Sum_probs=57.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCe--EEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVD--VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~--v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
||||+|+-|..-+..++ ...|++.|++ +.+++ ..+++ +++|.|||||+......
T Consensus 1 ~~~~~iid~g~gn~~s~---~~al~~~g~~~~v~~~~-------------------~~~~l--~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSA---AKALERAGAGADVVVTA-------------------DPDAV--AAADRVVLPGVGAFADC 56 (209)
T ss_pred CCeEEEEECCCChHHHH---HHHHHHcCCCccEEEEC-------------------CHHHh--cCCCEEEECCCCcHHHH
Confidence 57899998887666555 5777777874 33221 22344 67999999996422111
Q ss_pred ---ccccHHHHH-HHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 365 ---LQKSRILKK-LLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 365 ---~~~~~~l~~-~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
+... .+.+ +++...++++++.+||.|..+|++++
T Consensus 57 ~~~l~~~-~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 57 MRGLRAV-GLGEAVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred HHHHHHC-CcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 1111 1233 34444568999999999999999983
No 101
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.29 E-value=0.0012 Score=60.36 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
..++.|+.+|+++.++..+.. .++....+||.|+++||..... ......++++++.+++++
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD----------------AEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence 458888889998888765532 2222225799999999974333 246788899999999999
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||.|..+|+.+
T Consensus 72 vlGIC~G~Q~l~~~ 85 (178)
T cd01744 72 IFGICLGHQLLALA 85 (178)
T ss_pred EEEECHHHHHHHHH
Confidence 99999999999864
No 102
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=97.29 E-value=0.0013 Score=60.80 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=62.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
|||+|+ |..+.... .+.+.|++.|++++++..+.. ..+++ ++||.|||.||...+. .
T Consensus 2 ~~ilii--d~~dsf~~-~i~~~l~~~g~~~~v~~~~~~---------------~~~~l--~~~d~iIi~gGp~~~~---~ 58 (190)
T PRK06895 2 TKLLII--NNHDSFTF-NLVDLIRKLGVPMQVVNVEDL---------------DLDEV--ENFSHILISPGPDVPR---A 58 (190)
T ss_pred cEEEEE--eCCCchHH-HHHHHHHHcCCcEEEEECCcc---------------ChhHh--ccCCEEEECCCCCChH---H
Confidence 456665 44433333 389999999999998876432 12334 5689999999874322 2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+.+.++|++ .++++++.+||-|..+|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 3567788886 67899999999999999976
No 103
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.27 E-value=0.0015 Score=75.24 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=75.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCC--CCCcccEEEEcCCcccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGGMPGS 159 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~--~~~~~D~vivpGG~~~~ 159 (472)
....||+|+.++|.+-. .....+|+++|+++..+....= .... + ..++++. ...+||+|++|||+..-
T Consensus 975 ~~kpkvaIl~~pGtNce--~d~a~Af~~aG~~~~~v~~~dl--~~~~----i--~~s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSE--YDSAKAFEKEGAEVNLVIFRNL--NEEA----L--VESVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCCeEEEEECCCCCCH--HHHHHHHHHcCCceEEEEEecC--cccc----c--ccchhhhhcccccCcEEEEcCccCcc
Confidence 35679999999997632 2346677789999888876531 1000 0 0111111 12379999999997432
Q ss_pred ccc----------cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037 160 VRL----------RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202 (472)
Q Consensus 160 ~~l----------~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~ 202 (472)
+.+ ..++.+.+-+++++++++.+.+||+|-+ +|.+.|||.+.
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPYG 1096 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcCc
Confidence 222 3457888888999999999999999755 89999999753
No 104
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.23 E-value=0.0023 Score=74.21 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~- 363 (472)
..+||+|+.++|. ++.|+..+ |..+||++..+.... ...+ .....+|++|++|||....+
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~A---f~~aGf~~~~V~~~d--l~~~-------------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAA---FYAAGFEPWDVTMSD--LLNG-------------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHH---HHHcCCceEEEEeee--cccc-------------cccccceeEEEEcCcCCCccc
Confidence 4589999999997 67777655 447998887776542 1111 11126799999999863111
Q ss_pred ---------cccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHcCCCCCc
Q 012037 364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHGLLKAK 404 (472)
Q Consensus 364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~aGlL~g~ 404 (472)
.+..++.+.+.+++|. ++++.+.+||+|-.+|.+.|||-|-
T Consensus 1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~ 1148 (1307)
T PLN03206 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGP 1148 (1307)
T ss_pred cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCC
Confidence 2355678899999998 5599999999999999999999864
No 105
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.20 E-value=0.0021 Score=74.94 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~- 363 (472)
+.+||+|+.++|. ++.|+.. .|+.+||+...+....= . -.+...++|++|++|||....+
T Consensus 1054 ~~p~vail~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~-------------~~~~~l~~~~~lv~~GGFSygD~ 1115 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMAA---AFDRAGFEAWDVHMSDL--L-------------AGRVHLDEFRGLAACGGFSYGDV 1115 (1310)
T ss_pred CCceEEEEECCCCCCHHHHHH---HHHHhCCCcEEEEEecc--c-------------cCCcchhheeEEEEcCCCCCccc
Confidence 4589999999997 6777765 45588988877765431 0 0011126799999999852111
Q ss_pred ---------cccccHHHHHHHHHHH-HcCCeEEEEchhHHHHH-HcCCCCCc
Q 012037 364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLH-KHGLLKAK 404 (472)
Q Consensus 364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA-~aGlL~g~ 404 (472)
.+..++.+.+.+++|. ++++.+.+||+|-.+|. +.|||-|.
T Consensus 1116 lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1116 LGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred hhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 2455778899999998 89999999999999999 99999864
No 106
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.14 E-value=0.0038 Score=59.77 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=68.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
..++||.|+.-.+++... .+.+.|+..|++++++.+..+.+ + + ++. .+||+++|.||..+...
T Consensus 5 ~~~~~vlvi~h~~~~~~g--~l~~~l~~~g~~~~v~~~~~~~~--------~-p----~~l--~~~dgvii~Ggp~~~~d 67 (239)
T PRK06490 5 RDKRPVLIVLHQERSTPG--RVGQLLQERGYPLDIRRPRLGDP--------L-P----DTL--EDHAGAVIFGGPMSAND 67 (239)
T ss_pred CCCceEEEEecCCCCCCh--HHHHHHHHCCCceEEEeccCCCC--------C-C----Ccc--cccCEEEEECCCCCCCC
Confidence 347899999877765554 47889999999999887664411 1 1 122 26999999998533322
Q ss_pred cc-CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 162 LR-DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 162 l~-~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.. -...+++||++.++.++++.+||-|.. +|+.+
T Consensus 68 ~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a 102 (239)
T PRK06490 68 PDDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH 102 (239)
T ss_pred CchHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 11 124567899999999999999999866 67776
No 107
>PRK05665 amidotransferase; Provisional
Probab=97.14 E-value=0.0054 Score=58.72 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=40.7
Q ss_pred CcccEEEEcCCCcchhc-ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 348 SVYDLIILPGGVAGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
++||.+||.||..+... ..--..+.+||++..++++++.+||-|-.+||++
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 57999999999644321 1112567899999999999999999999999876
No 108
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.12 E-value=0.0033 Score=73.50 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~- 363 (472)
..+||+|+.+||. ++.|+..+ |+.+||++..+....- .... ..+ .+|++|++|||....+
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~A---f~~aG~~~~~v~~~dl--~~~~-----------~~l--~~~~~l~~~GGFS~gD~ 1095 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAA---FDRAGFDAIDVHMSDL--LAGR-----------VTL--EDFKGLVACGGFSYGDV 1095 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHH---HHHcCCCeEEEEeecC--cCCC-----------CCh--hhCcEEEECCccCCccc
Confidence 4579999999997 67776554 4589998877766531 1110 123 6799999999853212
Q ss_pred ---------cccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHcC-CCCC
Q 012037 364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHG-LLKA 403 (472)
Q Consensus 364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~aG-lL~g 403 (472)
.+..|+.+.+.+++|. ++++.+.+||+|-.+|.+.| |+.|
T Consensus 1096 lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1096 LGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 2345678899999976 88999999999999999998 7655
No 109
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.11 E-value=0.00095 Score=62.37 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=57.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc--C
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR--D 164 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~--~ 164 (472)
|.|+-+.+ .....+.+.|++.|++++++... .+.. +||.||||||......+. .
T Consensus 2 i~~~d~~~---~~~~~i~~~l~~~G~~v~~~~~~-------------------~~l~--~~d~iiipG~~~~~~~~~~~~ 57 (205)
T PRK13141 2 IAIIDYGM---GNLRSVEKALERLGAEAVITSDP-------------------EEIL--AADGVILPGVGAFPDAMANLR 57 (205)
T ss_pred EEEEEcCC---chHHHHHHHHHHCCCeEEEECCH-------------------HHhc--cCCEEEECCCCchHHHHHHHH
Confidence 45554443 33467799999999999886311 1222 699999999732111111 1
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...+.++|++.+++++++.+||.|.+ +|+..
T Consensus 58 ~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~ 88 (205)
T PRK13141 58 ERGLDEVIKEAVASGKPLLGICLGMQ-LLFES 88 (205)
T ss_pred HcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence 23578999999999999999999755 78875
No 110
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.10 E-value=0.0013 Score=61.57 Aligned_cols=86 Identities=19% Similarity=0.102 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc---
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV--- 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~--- 160 (472)
|+||+|+-+..-+. ..+.++|++.|+++.++... ++.. ++|.||+||+ +...
T Consensus 1 ~~~v~iid~~~GN~---~sl~~al~~~g~~v~vv~~~-------------------~~l~--~~d~iIlPG~-g~~~~~~ 55 (210)
T CHL00188 1 MMKIGIIDYSMGNL---HSVSRAIQQAGQQPCIINSE-------------------SELA--QVHALVLPGV-GSFDLAM 55 (210)
T ss_pred CcEEEEEEcCCccH---HHHHHHHHHcCCcEEEEcCH-------------------HHhh--hCCEEEECCC-CchHHHH
Confidence 46899998884444 45588888899998887432 0122 5899999995 2221
Q ss_pred -cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 161 -RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 161 -~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+. +..+.+.|++++++++++.+||.|-. +|++.
T Consensus 56 ~~l~-~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~ 90 (210)
T CHL00188 56 KKLE-KKGLITPIKKWIAEGNPFIGICLGLH-LLFET 90 (210)
T ss_pred HHHH-HCCHHHHHHHHHHcCCCEEEECHHHH-HHhhc
Confidence 121 22456778888899999999999755 67764
No 111
>PRK05665 amidotransferase; Provisional
Probab=97.06 E-value=0.0058 Score=58.51 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=38.0
Q ss_pred cccEEEEcCCccccccc-cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 146 VFDLIALPGGMPGSVRL-RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l-~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.||++||.||..+.... .--..+.+||++.+++++++.+||-|.. +|+.+
T Consensus 57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A 107 (240)
T PRK05665 57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL 107 (240)
T ss_pred cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence 69999999995333221 1115678999999999999999999766 67765
No 112
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.04 E-value=0.0008 Score=60.18 Aligned_cols=52 Identities=31% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCcccEEEEcCCCcch--hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 347 ESVYDLIILPGGVAGA--ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 347 ~~~~D~livpGG~~~~--~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
++++|+|++|||.... ..+.++..+.+.|+++.++|.+|.++|.|-.+|.+.
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~ 58 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGES 58 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHH
Confidence 4689999999998432 235567789999999999999999999999999875
No 113
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.02 E-value=0.0024 Score=67.00 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERL 365 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~ 365 (472)
.||+|+-.+-|+.+= -.=++.|+..|.++..+++-.+ +++ +++|+|+||||... ...+
T Consensus 245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------~~l--~~~d~l~ipGG~~~~~~~~l 304 (449)
T TIGR00379 245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------TEL--PDVDAVYIGGGFPELFAEEL 304 (449)
T ss_pred cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------CCC--CCCCEEEeCCcHHHHHHHHH
Confidence 589999887665532 3445677788899988877532 122 36899999999732 1335
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+..+.+.|+++.++|.+|.++|.|-.+|++.
T Consensus 305 ~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 305 SQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred HhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 567788999999999999999999999999864
No 114
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.02 E-value=0.0037 Score=59.79 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCEEEEEeCCCCCH--H-HHHHHHHHH----HhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 287 MPRVLIPIANGSEE--I-EIVTIVDIL----RRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 287 ~~~V~il~~~g~~~--~-e~~~~~d~l----~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
|++++|+..+.-.. - ......+.| +..+.+++++-...+ ..+.+. .+||.|||.||.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~p~~--~~~dgvvi~Gg~ 64 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAG--------------EPLPAP--DDFAGVIITGSW 64 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCC--------------CCCCCh--hhcCEEEEeCCC
Confidence 46688886654321 1 122233433 446677776655543 122333 679999999997
Q ss_pred cchhc-ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 360 AGAER-LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 360 ~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..... ..-...+.+||++..+.+++|.+||-|..+|+.+
T Consensus 65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 43211 1112567899999999999999999999999875
No 115
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=96.94 E-value=0.0051 Score=71.44 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=74.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV- 160 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~- 160 (472)
....||+|+.++|.+-. .....+|+.+|+++..+.... ...+ .....+|+.|++|||+..-+
T Consensus 1035 ~~~pkVaVl~~pGtN~~--~e~~~Af~~aGf~~~~V~~~d--l~~~-------------~~~L~~~~glv~pGGFSyGD~ 1097 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGD--REMAAAFYAAGFEPWDVTMSD--LLNG-------------RISLDDFRGIVFVGGFSYADV 1097 (1307)
T ss_pred CCCCeEEEEECCCCCCH--HHHHHHHHHcCCceEEEEeee--cccc-------------cccccceeEEEEcCcCCCccc
Confidence 34679999999997643 245778889999987777552 1111 11123799999999972211
Q ss_pred ---------cccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037 161 ---------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWGLLRRK 202 (472)
Q Consensus 161 ---------~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~aGlL~g~ 202 (472)
.+..++.+++-+++++ +.++.+.+||+|- -+|.+.|||.|-
T Consensus 1098 l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGf-QiL~~lgllPg~ 1148 (1307)
T PLN03206 1098 LDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGC-QLMALLGWVPGP 1148 (1307)
T ss_pred cchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHH-HHHHHcCCCCCC
Confidence 2345678889999999 5599999999964 489999999864
No 116
>PRK09065 glutamine amidotransferase; Provisional
Probab=96.90 E-value=0.0069 Score=57.91 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCCcH---HHHHHHHHHHH----hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 84 PKKVLVPVGFGTEE---MEAVIIVDVLR----RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 84 ~~kV~ill~~g~~~---~e~~~~~~~l~----~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
|+||+||..+.-.+ .......+.|. ..+.+++++-...+. .+.+. ..||+|||.||.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~p~~--~~~dgvvi~Gg~ 64 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGE--------------PLPAP--DDFAGVIITGSW 64 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCC--------------CCCCh--hhcCEEEEeCCC
Confidence 57899997765332 11222344444 457777766655431 12222 379999999995
Q ss_pred ccccc-ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 157 PGSVR-LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 157 ~~~~~-l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..... ..--..+.+||++.++++++|.+||-|.. +|+.+
T Consensus 65 ~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 104 (237)
T PRK09065 65 AMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAHA 104 (237)
T ss_pred cccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence 33221 11115678999999999999999999766 66664
No 117
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=96.90 E-value=0.0033 Score=57.99 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=59.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
|||+|+ |..+.... .+.+.|++.|++++++..+.. . .++.. .||+|||-||..... .
T Consensus 2 ~~ilii--d~~dsf~~-~i~~~l~~~g~~~~v~~~~~~-~--------------~~~l~--~~d~iIi~gGp~~~~---~ 58 (190)
T PRK06895 2 TKLLII--NNHDSFTF-NLVDLIRKLGVPMQVVNVEDL-D--------------LDEVE--NFSHILISPGPDVPR---A 58 (190)
T ss_pred cEEEEE--eCCCchHH-HHHHHHHHcCCcEEEEECCcc-C--------------hhHhc--cCCEEEECCCCCChH---H
Confidence 355444 54444444 489999999999999876532 0 11222 589999988843221 2
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+.+.++|++ ++.++++.+||-|.+ +|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~ 88 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF 88 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 3567888986 788999999999866 67766
No 118
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.85 E-value=0.0053 Score=58.91 Aligned_cols=97 Identities=21% Similarity=0.183 Sum_probs=58.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCe---EEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVD---VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~---v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
|+.|+|+-....+........++|++.+.. ++++....+ +....+. ++||.|||.||.....
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~dgvIi~Gg~~~~~ 65 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-------------PLPDLDL--DDYSGVIVGGSPFNVS 65 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-------------CCCCCCH--hhccEEEEcCCCCcCC
Confidence 455777666544443236667777777744 554443332 1011123 6799999999974332
Q ss_pred cc--cccH-------HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 364 RL--QKSR-------ILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 364 ~~--~~~~-------~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.. ...+ .+.++++...+++++|.+||-|..+|+.+
T Consensus 66 d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 66 DPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 11 0111 23345555558999999999999999976
No 119
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=96.83 E-value=0.0022 Score=57.47 Aligned_cols=85 Identities=22% Similarity=0.166 Sum_probs=58.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCC-CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc-ccccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAG-AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GSVRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag-~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~-~~~~l 162 (472)
+||+||...|--. .=.+++++++ .++..+ + ..++.+ ..|++|||||.. ....+
T Consensus 1 m~IGVLalQG~v~----EH~~~l~~~~~~e~~~V--k-----------------~~~dL~--~~d~LIiPGGESTTi~rL 55 (194)
T COG0311 1 MKIGVLALQGAVE----EHLEALEKAGGAEVVEV--K-----------------RPEDLE--GVDGLIIPGGESTTIGRL 55 (194)
T ss_pred CeEEEEEecccHH----HHHHHHHhhcCCceEEE--c-----------------CHHHhc--cCcEEEecCccHHHHHHH
Confidence 5899999988533 3356677775 332222 1 112333 689999999942 23346
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
.+...+.+-|+++..+|+++.+.|+| ..+||+
T Consensus 56 ~~~~gl~e~l~~~~~~G~Pv~GTCAG-lIlLak 87 (194)
T COG0311 56 LKRYGLLEPLREFIADGLPVFGTCAG-LILLAK 87 (194)
T ss_pred HHHcCcHHHHHHHHHcCCceEEechh-hhhhhh
Confidence 66778888999999999999999995 656665
No 120
>PHA03366 FGAM-synthase; Provisional
Probab=96.83 E-value=0.0089 Score=69.92 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~- 363 (472)
..+||+|+.++|. .+.|+.. .|..+||++..+....= ... + . + ++|+.|++|||....+
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dL--~~~--------~--~--l--~~f~glv~~GGFS~gD~ 1087 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLA---AFTNAGFDPYPVSIEEL--KDG--------T--F--L--DEFSGLVIGGSSGAEDS 1087 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHH---HHHHcCCceEEEEeecC--CCC--------C--c--c--ccceEEEEcCCCCCccc
Confidence 4689999999997 5666654 45569999888876531 000 1 1 2 6789999999874222
Q ss_pred ---------cccccHHHHHHHHHHH-HcCCeEEEEch-hHHHHHHcCCCC
Q 012037 364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLK 402 (472)
Q Consensus 364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~-G~~lLA~aGlL~ 402 (472)
.+..|+.+.+.+++|. ++++.+.+||+ |-.+|.+.|+|.
T Consensus 1088 l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1088 YTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred ccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 2356788999999998 56999999999 999999999994
No 121
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.82 E-value=0.0034 Score=58.88 Aligned_cols=90 Identities=21% Similarity=0.178 Sum_probs=55.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCE--EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQ--VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV- 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~--v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~- 160 (472)
++||+|+=+..-+..+ ....|++.|++ +.++.. -++.. .+|.|||||+.....
T Consensus 1 ~~~~~iid~g~gn~~s---~~~al~~~g~~~~v~~~~~-------------------~~~l~--~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 1 MMTVAIIDYGSGNLRS---AAKALERAGAGADVVVTAD-------------------PDAVA--AADRVVLPGVGAFADC 56 (209)
T ss_pred CCeEEEEECCCChHHH---HHHHHHHcCCCccEEEECC-------------------HHHhc--CCCEEEECCCCcHHHH
Confidence 4689988777655544 47888888884 333211 12233 799999999732111
Q ss_pred --cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCC
Q 012037 161 --RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 198 (472)
Q Consensus 161 --~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGl 198 (472)
.+........+++..++.++++.+||.|.+ +|++++.
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~~~ 95 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQ-LLFERGL 95 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHH-HHhhccc
Confidence 111112233445555678999999999755 7888754
No 122
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.78 E-value=0.0063 Score=56.56 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=57.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK 367 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~ 367 (472)
|+|+=|..-+..++ ...|+..|++++++.. .+++ .++|.||+||+....... ..
T Consensus 2 i~vid~g~gn~~~~---~~~l~~~g~~v~~~~~-------------------~~~l--~~~d~lilpG~g~~~~~~~~l~ 57 (199)
T PRK13181 2 IAIIDYGAGNLRSV---ANALKRLGVEAVVSSD-------------------PEEI--AGADKVILPGVGAFGQAMRSLR 57 (199)
T ss_pred EEEEeCCCChHHHH---HHHHHHCCCcEEEEcC-------------------hHHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 55554444444444 4577888888877611 1233 468999999964211111 11
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
...+.++|+++.+.+++|.+||.|..+|+.+
T Consensus 58 ~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 58 ESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred HCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 2246788998889999999999999999986
No 123
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.78 E-value=0.011 Score=60.19 Aligned_cols=144 Identities=17% Similarity=0.130 Sum_probs=92.3
Q ss_pred CEEeCCCCC---ChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccc-cCCCCEEEEEeCCCCCHHHHH
Q 012037 229 EVTTSRGPG---TSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWF-FDRMPRVLIPIANGSEEIEIV 304 (472)
Q Consensus 229 ~iiTa~g~~---~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~-~~~~~~V~il~~~g~~~~e~~ 304 (472)
+++++.-.. ..++-+-.++++...-+.-..++..=- .....+.+...+ .....||+|.-=.-| ..=+-
T Consensus 190 GLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~~~~-------~~~~~~~~~~~~~~~~~~rIAVA~D~AF-~FyY~ 261 (451)
T COG1797 190 GLVPASERLELEAKLEALAEVVEKHVDLDALLEIASSAG-------PLEPDLSPEPERGNPLGVRIAVARDAAF-NFYYP 261 (451)
T ss_pred ccccchhhhhHHHHHHHHHHHHHhhCCHHHHHHHHhccC-------CCCCCccccccccCCcCceEEEEecchh-ccccH
Confidence 466654332 234555666666666665555543110 001111111111 112258887643333 33344
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcccccHHHHHHHHHHHHcC
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERLQKSRILKKLLKEQKVAG 382 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~~~~~~l~~~L~~~~~~g 382 (472)
--.|.|+.+|.++.++|+-.+ ++. +++.|+|.+|||.+. ...+..++...+.|+++++.|
T Consensus 262 ~nl~~Lr~~GAelv~FSPL~D-----------------~~l-P~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G 323 (451)
T COG1797 262 ENLELLREAGAELVFFSPLAD-----------------EEL-PPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAG 323 (451)
T ss_pred HHHHHHHHCCCEEEEeCCcCC-----------------CCC-CCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcC
Confidence 568999999999999999764 122 235899999999853 345788999999999999999
Q ss_pred CeEEEEchhHHHHHHc
Q 012037 383 RIYGAVCSSPIVLHKH 398 (472)
Q Consensus 383 ~~v~aic~G~~lLA~a 398 (472)
++|-+=|.|-++|.+.
T Consensus 324 ~piyaECGGlMYL~~~ 339 (451)
T COG1797 324 KPIYAECGGLMYLGES 339 (451)
T ss_pred CceEEecccceeehhh
Confidence 9999999999998864
No 124
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.76 E-value=0.0019 Score=59.92 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--ccccHHHHHHHHHHHH
Q 012037 303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--LQKSRILKKLLKEQKV 380 (472)
Q Consensus 303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--~~~~~~l~~~L~~~~~ 380 (472)
+....+.|++.|++++++... +++ +++|.||+||+....+. ......+.++|+++.+
T Consensus 11 ~~~~~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~ 69 (198)
T cd01748 11 LRSVANALERLGAEVIITSDP-------------------EEI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIA 69 (198)
T ss_pred HHHHHHHHHHCCCeEEEEcCh-------------------HHh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHH
Confidence 445578899999988887521 123 56899999986421111 1123357899999999
Q ss_pred cCCeEEEEchhHHHHHHc
Q 012037 381 AGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 381 ~g~~v~aic~G~~lLA~a 398 (472)
++++|.+||.|..+|+++
T Consensus 70 ~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 70 SGKPFLGICLGMQLLFES 87 (198)
T ss_pred CCCcEEEECHHHHHhccc
Confidence 999999999999999997
No 125
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=96.75 E-value=0.01 Score=69.05 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~- 363 (472)
..+||+|+.++|. ++.|+.. .|+.+||++..+....- ... ..+ ++|+.|+++||....+
T Consensus 928 ~~p~VaIl~~pG~N~~~e~~~---Af~~aGf~~~~v~~~dl--~~~---------~~l-----~~f~glv~~Ggfsy~D~ 988 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGLLA---ALTNAGFDPRIVSITEL--KKT---------DFL-----DTFSGLIIGGASGTLDS 988 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHHHH---HHHHcCCceEEEEeccC--CCC---------Cch-----hheEEEEEcCcCCCCcc
Confidence 4579999999997 5666654 45569999888876641 000 011 4689999999864222
Q ss_pred ---------cccccHHHHHHHHHHH-HcCCeEEEEch-hHHHHHHcCCCC
Q 012037 364 ---------RLQKSRILKKLLKEQK-VAGRIYGAVCS-SPIVLHKHGLLK 402 (472)
Q Consensus 364 ---------~~~~~~~l~~~L~~~~-~~g~~v~aic~-G~~lLA~aGlL~ 402 (472)
.+..++.+.+.+++|. ++++.+.+||+ |-.+|.+.|+|.
T Consensus 989 lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~ 1038 (1202)
T TIGR01739 989 EVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVG 1038 (1202)
T ss_pred chHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCc
Confidence 2355788999999998 66999999999 999999999984
No 126
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=96.75 E-value=0.0014 Score=59.25 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=40.5
Q ss_pred CccccCCCcccEEEEcCCCcc-hhcccccHHHHHHHHHHHHcC-CeEEEEchhHHHHHH
Q 012037 341 SISDAAESVYDLIILPGGVAG-AERLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK 397 (472)
Q Consensus 341 ~l~~~~~~~~D~livpGG~~~-~~~~~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~ 397 (472)
.-+|+ ++.|.||||||--. ...+.....+.+.|+++.++| ++|.+.|+|..+||+
T Consensus 27 ~~~dL--~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~ 83 (188)
T PF01174_consen 27 TPEDL--EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAK 83 (188)
T ss_dssp SGGGG--TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEE
T ss_pred CHHHH--ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhh
Confidence 34555 56899999999521 233555668999999999998 999999999999997
No 127
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=96.72 E-value=0.0058 Score=71.39 Aligned_cols=102 Identities=13% Similarity=0.053 Sum_probs=73.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-- 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-- 160 (472)
...||+|+.++|++-.. ....+|+.+|+++..+....= .. - .....+|++|++|||+..-+
T Consensus 1054 ~~p~vail~~pG~N~~~--e~~~Af~~aGf~~~~v~~~dl--~~--------~-----~~~l~~~~~lv~~GGFSygD~l 1116 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDR--EMAAAFDRAGFEAWDVHMSDL--LA--------G-----RVHLDEFRGLAACGGFSYGDVL 1116 (1310)
T ss_pred CCceEEEEECCCCCCHH--HHHHHHHHhCCCcEEEEEecc--cc--------C-----CcchhheeEEEEcCCCCCccch
Confidence 35799999999977432 346688899999888876531 00 0 11223699999999962211
Q ss_pred --------cccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhh-cCCCCCCc
Q 012037 161 --------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLL-PWGLLRRK 202 (472)
Q Consensus 161 --------~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa-~aGlL~g~ 202 (472)
.+..++.+++-+++++ +.++.+.+||+|-+ +|. +.||+.|.
T Consensus 1117 gsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1117 GAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred hHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence 1345678889999999 89999999999755 677 99999863
No 128
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=96.68 E-value=0.0033 Score=58.33 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc---cCChHHHHHHHHHH
Q 012037 100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL---RDCEILKKITSKQA 176 (472)
Q Consensus 100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l---~~~~~~~~~l~~~~ 176 (472)
+....+.|++.|++++++.... +.+ +||+|++||+. ..... ..+..+.+++++++
T Consensus 11 ~~~~~~~l~~~g~~v~v~~~~~-------------------~l~--~~d~iiipG~~-~~~~~~~~~~~~~~~~~i~~~~ 68 (198)
T cd01748 11 LRSVANALERLGAEVIITSDPE-------------------EIL--SADKLILPGVG-AFGDAMANLRERGLIEALKEAI 68 (198)
T ss_pred HHHHHHHHHHCCCeEEEEcChH-------------------Hhc--cCCEEEECCCC-cHHHHHHHHHHcChHHHHHHHH
Confidence 4566889999999988876321 122 69999999972 22111 12345789999999
Q ss_pred hcCCeEEEEchhhHHhhhcC
Q 012037 177 EEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 177 ~~~k~I~aic~g~~~lLa~a 196 (472)
+++++|.+||.|.+ +|+.+
T Consensus 69 ~~~~pilGiC~G~q-~l~~~ 87 (198)
T cd01748 69 ASGKPFLGICLGMQ-LLFES 87 (198)
T ss_pred HCCCcEEEECHHHH-Hhccc
Confidence 99999999999754 78886
No 129
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=96.67 E-value=0.012 Score=55.40 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
...+.|++.|+++.++..+.. .. . ...+. ..+||.|||.||+..+. .....++|++++.+++++
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~-~~---------~--~~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~P 78 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDP-RL---------A--DEAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTP 78 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCc-CH---------H--HHHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCCC
Confidence 567889999999988866532 00 1 11111 14699999999975333 234567899999999999
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||-|..+|+.+
T Consensus 79 iLGIC~G~Qlla~a 92 (214)
T PRK07765 79 LLGVCLGHQAIGVA 92 (214)
T ss_pred EEEEccCHHHHHHH
Confidence 99999999999864
No 130
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=96.66 E-value=0.0059 Score=55.66 Aligned_cols=74 Identities=20% Similarity=0.105 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCe
Q 012037 102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL 181 (472)
Q Consensus 102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~ 181 (472)
...+.|+++|+++.++..+.. . ++....+||+|+++||..... ++....++++++.+++++
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~--~--------------~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD--A--------------EEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC--H--------------HHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCC
Confidence 458888899999988876531 0 011122699999999943332 347788999999999999
Q ss_pred EEEEchhhHHhhhc
Q 012037 182 YGAICAAPAVTLLP 195 (472)
Q Consensus 182 I~aic~g~~~lLa~ 195 (472)
+.+||.|.. +|+.
T Consensus 72 vlGIC~G~Q-~l~~ 84 (178)
T cd01744 72 IFGICLGHQ-LLAL 84 (178)
T ss_pred EEEECHHHH-HHHH
Confidence 999999866 4554
No 131
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.61 E-value=0.012 Score=60.01 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=71.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--cccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l 162 (472)
.||+|---.-|+. =+-.-.+.|+..|+++.+.||-.. ++.+ .+.|+|+||||++. ...|
T Consensus 246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D-----------------~~lP-~~~D~vYlgGGYPElfA~~L 306 (451)
T COG1797 246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLAD-----------------EELP-PDVDAVYLGGGYPELFAEEL 306 (451)
T ss_pred ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCC-----------------CCCC-CCCCEEEeCCCChHHHHHHH
Confidence 6899886554443 356678999999999999998753 1233 25899999999864 3458
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.++...++.|++++..|++|-+=|.| -+.|.+.
T Consensus 307 ~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~~ 339 (451)
T COG1797 307 SANESMRRAIKAFAAAGKPIYAECGG-LMYLGES 339 (451)
T ss_pred hhCHHHHHHHHHHHHcCCceEEeccc-ceeehhh
Confidence 88999999999999999999999995 5455543
No 132
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=96.57 E-value=0.0077 Score=55.40 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHc
Q 012037 302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA 381 (472)
Q Consensus 302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~ 381 (472)
-...+.+.|++.|++++++..+. +.+++...++|.||++||.... .+....+|+++..++
T Consensus 10 ~~~~l~~~l~~~g~~~~~~~~~~----------------~~~~~~~~~~~glii~Gg~~~~----~~~~~~~~i~~~~~~ 69 (188)
T TIGR00888 10 YTQLIARRLRELGVYSELVPNTT----------------PLEEIREKNPKGIILSGGPSSV----YAENAPRADEKIFEL 69 (188)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCC----------------CHHHHhhcCCCEEEECCCCCCc----CcCCchHHHHHHHhC
Confidence 34557788888898888775542 1223321246799999997422 122346788888899
Q ss_pred CCeEEEEchhHHHHHHc
Q 012037 382 GRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 382 g~~v~aic~G~~lLA~a 398 (472)
+++|.+||-|..+|+.+
T Consensus 70 ~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 70 GVPVLGICYGMQLMAKQ 86 (188)
T ss_pred CCCEEEECHHHHHHHHh
Confidence 99999999999999876
No 133
>PRK00784 cobyric acid synthase; Provisional
Probab=96.52 E-value=0.0058 Score=64.83 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=64.5
Q ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-
Q 012037 288 PRVLIPIANG-SEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER- 364 (472)
Q Consensus 288 ~~V~il~~~g-~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~- 364 (472)
.||+|+-||. |+. .=+|.|+. +|+++.++++.. ++ +++|.|++|||......
T Consensus 252 ~~i~v~~~~~a~~f----~nl~~l~~~~g~~v~~~s~~~-------------------~l--~~~d~lilpGg~~~~~~~ 306 (488)
T PRK00784 252 LRIAVIRLPRISNF----TDFDPLRAEPGVDVRYVRPGE-------------------PL--PDADLVILPGSKNTIADL 306 (488)
T ss_pred eEEEEEeCCCcCCc----cChHHHhhcCCCeEEEECCcc-------------------cc--ccCCEEEECCccchHHHH
Confidence 5899999874 443 55677777 888888886532 22 46799999999732222
Q ss_pred -ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 -~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus 307 ~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 307 AWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 3345568899999999999999999999999873
No 134
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=96.48 E-value=0.007 Score=55.71 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcC
Q 012037 303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG 382 (472)
Q Consensus 303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g 382 (472)
...+...|++.|.+++++..+... ....++ ..+||.++|+||...... .+..+++++++.+++
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~~------------~~~~~~--~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSDF------------EEPLED--LDDYDGIIISGGPGSPYD---IEGLIELIREARERK 72 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGGH------------HHHHHH--TTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEEECCCch------------hhhhhh--hcCCCEEEECCcCCcccc---ccccccccccccccc
Confidence 345678888889888888765420 000112 378999999999754332 578888999999999
Q ss_pred CeEEEEchhHHHHHHc
Q 012037 383 RIYGAVCSSPIVLHKH 398 (472)
Q Consensus 383 ~~v~aic~G~~lLA~a 398 (472)
+++.+||-|-.+|+.+
T Consensus 73 ~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 73 IPILGICLGHQILAHA 88 (192)
T ss_dssp SEEEEETHHHHHHHHH
T ss_pred eEEEEEeehhhhhHHh
Confidence 9999999999999875
No 135
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.026 Score=52.33 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=53.8
Q ss_pred HHHHHHHhCCCeEE-EEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc--cHHHHHHHHHHHHc
Q 012037 305 TIVDILRRAKVDVV-VASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK--SRILKKLLKEQKVA 381 (472)
Q Consensus 305 ~~~d~l~~a~~~v~-~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~--~~~l~~~L~~~~~~ 381 (472)
.+...++..|+... ++..+. +..++...++|.+||.||+.+ ..... .+...+||++....
T Consensus 16 li~r~~re~g~v~~e~~~~~~----------------~~~~~~~~~~~giIlsGgp~s-v~~~~~w~~~~~~~i~~~~~p 78 (198)
T COG0518 16 LIARRLRELGYVYSEIVPYTG----------------DAEELPLDSPDGIIISGGPMS-VYDEDPWLPREKDLIKDAGVP 78 (198)
T ss_pred HHHHHHHHcCCceEEEEeCCC----------------CcccccccCCCEEEEcCCCCC-CccccccchhHHHHHHHhCCC
Confidence 45566777885333 223322 344444456699999999733 22233 67889999999999
Q ss_pred CCeEEEEchhHHHHHHc
Q 012037 382 GRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 382 g~~v~aic~G~~lLA~a 398 (472)
+++|.+||-|..+||++
T Consensus 79 ~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 79 GKPVLGICLGHQLLAKA 95 (198)
T ss_pred CCCEEEEChhHHHHHHH
Confidence 99999999999999964
No 136
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=96.44 E-value=0.013 Score=53.96 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=54.2
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
.+++.|++.|++++++..+.. .++++...++|.||+-||+..+.+. .....+++. .+++++
T Consensus 14 nl~~~l~~~~~~~~v~~~~~~---------------~~~~~~~~~~~~iilsgGP~~~~~~---~~~~~~i~~-~~~~~P 74 (191)
T PRK06774 14 NLYQYFCELGTEVMVKRNDEL---------------QLTDIEQLAPSHLVISPGPCTPNEA---GISLAVIRH-FADKLP 74 (191)
T ss_pred HHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCeEEEcCCCCChHhC---CCchHHHHH-hcCCCC
Confidence 577888899999988876532 2344433468999999998654432 224556654 467899
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||-|..+|+.+
T Consensus 75 iLGIC~G~Qlla~~ 88 (191)
T PRK06774 75 ILGVCLGHQALGQA 88 (191)
T ss_pred EEEECHHHHHHHHH
Confidence 99999999999986
No 137
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.44 E-value=0.013 Score=54.32 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=53.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC-CCcchhcc-
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAGAERL- 365 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG-G~~~~~~~- 365 (472)
|+|+|+=|-.-+...+ ...|++.|++++++... +++ .++|.||+|| |.. ....
T Consensus 1 m~i~iid~g~gn~~s~---~~~l~~~g~~~~~v~~~-------------------~~~--~~~d~iIlPG~G~~-~~~~~ 55 (196)
T PRK13170 1 MNVVIIDTGCANLSSV---KFAIERLGYEPVVSRDP-------------------DVI--LAADKLFLPGVGTA-QAAMD 55 (196)
T ss_pred CeEEEEeCCCchHHHH---HHHHHHCCCeEEEECCH-------------------HHh--CCCCEEEECCCCch-HHHHH
Confidence 4677776665555544 44788888888777321 223 4579999999 431 1111
Q ss_pred -cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 -~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+...+.+++++ .+++|.+||.|..+|+++
T Consensus 56 ~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 56 QLRERELIDLIKA---CTQPVLGICLGMQLLGER 86 (196)
T ss_pred HHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence 111234445544 489999999999999977
No 138
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=96.43 E-value=0.01 Score=62.24 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=66.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc--ccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~--~~l 162 (472)
.||+|.-.+-|+.. +..=++.|++.|+++..+++-.+ ++.+ ++|+|+||||.... ..+
T Consensus 245 ~~Iava~d~afnFy-~~~~~~~L~~~g~~~~~~~~~~d-----------------~~l~--~~d~l~ipGG~~~~~~~~l 304 (449)
T TIGR00379 245 VRIAVAQDQAFNFY-YQDNLDALTHNAAELVPFSPLED-----------------TELP--DVDAVYIGGGFPELFAEEL 304 (449)
T ss_pred cEEEEEechhhcee-HHHHHHHHHHCCCEEEEECCccC-----------------CCCC--CCCEEEeCCcHHHHHHHHH
Confidence 58999987755442 13345777788999988887532 1223 68999999996422 235
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.+.|+++.++|++|.++|.| ..+|++.
T Consensus 305 ~~~~~~~~~i~~~~~~G~pv~g~CgG-~~~L~~~ 337 (449)
T TIGR00379 305 SQNQALRDSIKTFIHQGLPIYGECGG-LMYLSQS 337 (449)
T ss_pred HhhhHHHHHHHHHHHcCCCEEEEcHH-HHHHHhh
Confidence 55777899999999999999999996 5567664
No 139
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.41 E-value=0.015 Score=58.76 Aligned_cols=93 Identities=16% Similarity=0.261 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhC---CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a---~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|+|+|.--+|.....+-..++.|++. .|.|..++.+. |..+ .+ ..++|++|+|||......
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~-----------l~~~-pw----~~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE-----------LLNE-PW----QSKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH-----------hhcC-cc----ccCCcEEEECCCcchHHH
Confidence 57888888899999999999999863 47776654321 1111 12 246899999999732222
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 396 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA 396 (472)
-.-+..-.+.||+|.++|.-..+||+|+++-.
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 22355668899999999999999999998765
No 140
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.40 E-value=0.0076 Score=50.50 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=58.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch--hccc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA--ERLQ 366 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~--~~~~ 366 (472)
+|+|.--+|.+...+-.....|+..- .++.++.+. +. +..++ .++|.||+|||.... ..+.
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~ 63 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN 63 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence 35666667888888888888887644 444333321 10 11111 468999999986322 2232
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVL 395 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lL 395 (472)
... .+.|+++.++|+++.+||.|+.+-
T Consensus 64 -~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 64 -GKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred -hhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 223 788899889999999999999876
No 141
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=96.38 E-value=0.0032 Score=56.28 Aligned_cols=52 Identities=29% Similarity=0.206 Sum_probs=41.5
Q ss_pred CCcccEEEEcCCcccc--ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 144 HQVFDLIALPGGMPGS--VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 144 ~~~~D~vivpGG~~~~--~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+.++|+|++|||.+.. ..+.++..+.+.|+++.++|++|.++|.| ..+|.+.
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~ 58 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES 58 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence 4479999999997433 23556778999999999999999999996 5566664
No 142
>PHA03366 FGAM-synthase; Provisional
Probab=96.36 E-value=0.018 Score=67.50 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=74.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV- 160 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~- 160 (472)
....||+|+.++|.+-. .....+|..+||++..+....= . .... ..+|+.|++|||+...+
T Consensus 1026 ~~~prVaIl~~pG~N~~--~e~~~Af~~aGf~~~~v~~~dL--~---------~~~~-----l~~f~glv~~GGFS~gD~ 1087 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGP--HALLAAFTNAGFDPYPVSIEEL--K---------DGTF-----LDEFSGLVIGGSSGAEDS 1087 (1304)
T ss_pred CCCCeEEEEECCCCCCH--HHHHHHHHHcCCceEEEEeecC--C---------CCCc-----cccceEEEEcCCCCCccc
Confidence 34679999999997744 2457788889999988876531 1 0001 23789999999973222
Q ss_pred ---------cccCChHHHHHHHHHH-hcCCeEEEEch-hhHHhhhcCCCCC
Q 012037 161 ---------RLRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLR 200 (472)
Q Consensus 161 ---------~l~~~~~~~~~l~~~~-~~~k~I~aic~-g~~~lLa~aGlL~ 200 (472)
.+..++.+.+.+++++ +.++.+.+||+ |-+ +|.+.|+|.
T Consensus 1088 l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366 1088 YTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVG 1137 (1304)
T ss_pred ccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCcc
Confidence 2345788999999999 56999999999 966 899999994
No 143
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=96.36 E-value=0.015 Score=53.59 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
..++.|+..|+++.++..+.. .++++...++|.|||-||++.+.+ .....++++++ +++++
T Consensus 14 ~~~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iilsgGpg~p~~---~~~~~~~i~~~-~~~~P 74 (188)
T TIGR00566 14 NLVQYFCELGAEVVVKRNDSL---------------TLQEIEALLPLLIVISPGPCTPNE---AGISLEAIRHF-AGKLP 74 (188)
T ss_pred HHHHHHHHcCCceEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhh---cchhHHHHHHh-ccCCC
Confidence 466777778888887765532 233332245899999998754432 23347788877 67899
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||-|-.+|+.+
T Consensus 75 vLGIC~G~Qll~~~ 88 (188)
T TIGR00566 75 ILGVCLGHQAMGQA 88 (188)
T ss_pred EEEECHHHHHHHHH
Confidence 99999999999865
No 144
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=96.33 E-value=0.012 Score=54.08 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=59.2
Q ss_pred EEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHH
Q 012037 292 IPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL 371 (472)
Q Consensus 292 il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l 371 (472)
|++-|.++.... .+++.|+..|.++.++..+.. +++++...++|.||+-||++.+.+. ...
T Consensus 2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iils~GPg~p~~~---~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL---------------TLADIDALKPQKIVISPGPCTPDEA---GIS 62 (187)
T ss_pred EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC---------------CHHHHHhcCCCEEEEcCCCCChHHC---Ccc
Confidence 344455544444 477888888999988765421 2334333468999999998655432 334
Q ss_pred HHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 372 KKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 372 ~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+++++. .+++.+|.+||-|..+|+.+
T Consensus 63 ~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 63 LDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred HHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 566665 46789999999999999876
No 145
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=96.33 E-value=0.0099 Score=55.11 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc---ccccHHHHHHHHHH
Q 012037 302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER---LQKSRILKKLLKEQ 378 (472)
Q Consensus 302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~---~~~~~~l~~~L~~~ 378 (472)
.+..+.+.|+..|++++++..+ +++ +++|.||+||+....+. +.... ...+++++
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~-------------------~~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~ 67 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDS-------------------KEA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELV 67 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHH
Confidence 4566778888888888776521 122 46899999995311111 11111 23444778
Q ss_pred HHcCCeEEEEchhHHHHHHc
Q 012037 379 KVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 379 ~~~g~~v~aic~G~~lLA~a 398 (472)
.+.+++|.+||.|..+|+++
T Consensus 68 ~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 68 VRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred HhCCCCEEEECHHHHHhhhc
Confidence 88999999999999999998
No 146
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=96.29 E-value=0.018 Score=67.47 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc--
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-- 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-- 160 (472)
...||+|+.++|.+-. .....+|+.+|+++..+.... ..... .+ ..+|+++++|||+..-+
T Consensus 1034 ~~pkv~il~~pG~N~~--~e~~~Af~~aG~~~~~v~~~d--l~~~~-----------~~--l~~~~~l~~~GGFS~gD~l 1096 (1290)
T PRK05297 1034 ARPKVAILREQGVNSH--VEMAAAFDRAGFDAIDVHMSD--LLAGR-----------VT--LEDFKGLVACGGFSYGDVL 1096 (1290)
T ss_pred CCCeEEEEECCCCCCH--HHHHHHHHHcCCCeEEEEeec--CcCCC-----------CC--hhhCcEEEECCccCCcccc
Confidence 4579999999997643 245778889999988877653 11110 02 23799999999963222
Q ss_pred --------cccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcCC-CCCC
Q 012037 161 --------RLRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWG-LLRR 201 (472)
Q Consensus 161 --------~l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~aG-lL~g 201 (472)
.+..++.+.+-+++++ +.++.+.+||+|- -+|.+.| |+.+
T Consensus 1097 gsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGf-Q~L~~lg~l~p~ 1146 (1290)
T PRK05297 1097 GAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGC-QMMSNLKEIIPG 1146 (1290)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHH-HHHHHhCCccCC
Confidence 2334578888899977 8899999999965 4899997 6654
No 147
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.013 Score=53.67 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC-Cc--cccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG-GM--PGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG-G~--~~~~ 160 (472)
|++|+|+=+.--+. ..+..+|+++|+++.+..... ++. ..|.||+|| |. ..+.
T Consensus 1 m~~i~IIDyg~GNL---~Sv~~Aler~G~~~~vs~d~~-------------------~i~--~AD~liLPGVGaf~~am~ 56 (204)
T COG0118 1 MMMVAIIDYGSGNL---RSVKKALERLGAEVVVSRDPE-------------------EIL--KADKLILPGVGAFGAAMA 56 (204)
T ss_pred CCEEEEEEcCcchH---HHHHHHHHHcCCeeEEecCHH-------------------HHh--hCCEEEecCCCCHHHHHH
Confidence 57888887765444 455788889998876554221 222 589999998 32 1233
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
.+... .+.+.|+++...+|++.+||-|-+ +|.+.+
T Consensus 57 ~L~~~-gl~~~i~~~~~~~kP~LGIClGMQ-lLfe~S 91 (204)
T COG0118 57 NLRER-GLIEAIKEAVESGKPFLGICLGMQ-LLFERS 91 (204)
T ss_pred HHHhc-chHHHHHHHHhcCCCEEEEeHhHH-hhhhcc
Confidence 34433 789999999999999999999766 566544
No 148
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.25 E-value=0.018 Score=54.15 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCCEEEEEeCCCCCHHH-HHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--
Q 012037 286 RMPRVLIPIANGSEEIE-IVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-- 361 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e-~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-- 361 (472)
..+||+++-......-| +......|.+. |++++.+..-. .....+.+ .+.|+|++|||...
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-------------~~~~~~~l--~~ad~I~l~GG~~~~~ 94 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-------------TEDPLDAL--LEADVIYVGGGNTFNL 94 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-------------cccHHHHH--hcCCEEEECCchHHHH
Confidence 45688888877554333 56678889999 88877664321 11113344 67899999998521
Q ss_pred hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 362 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 362 ~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
...+ +...+.+.|++..++|++++++|.|+.++.+.
T Consensus 95 ~~~l-~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 95 LAQW-REHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHH-HHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 1112 22357788888889999999999999999884
No 149
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=96.23 E-value=0.016 Score=53.14 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
...+.|++.|++++++..+.. +..+.+. .++|.||+.||..... .+ ...+.+++...++++
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~-------------~~~~~~~--~~~dgvil~gG~~~~~---~~-~~~~~i~~~~~~~~P 73 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEI-------------TLEELEL--LNPDAIVISPGPGHPE---DA-GISLEIIRALAGKVP 73 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCC-------------CHHHHhh--cCCCEEEECCCCCCcc---cc-hhHHHHHHHHhcCCC
Confidence 366888889999998877653 1111123 5699999988764322 12 245555555677899
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||-|..+|+.+
T Consensus 74 vlGIC~G~Qlla~~ 87 (184)
T cd01743 74 ILGVCLGHQAIAEA 87 (184)
T ss_pred EEEECHhHHHHHHH
Confidence 99999999999876
No 150
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.22 E-value=0.02 Score=54.98 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=56.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCE---EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQ---VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~---v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
||.|+|+-....+........+.|++.+.. ++++....+ . .. .. +...||+|||.||..++.
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~----~~--~~~~~dgvIi~Gg~~~~~ 65 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE-P--------LP----DL--DLDDYSGVIVGGSPFNVS 65 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC-C--------CC----CC--CHhhccEEEEcCCCCcCC
Confidence 456777766554443235667777777654 444433322 0 00 01 223799999999953332
Q ss_pred cc--cCCh-------HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 161 RL--RDCE-------ILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 161 ~l--~~~~-------~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.. ...+ .+.++++...+.+++|.+||-|.. +|+.+
T Consensus 66 d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 66 DPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 21 1122 223455555589999999999765 67766
No 151
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=96.18 E-value=0.015 Score=53.65 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--------------ccccH
Q 012037 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER--------------LQKSR 369 (472)
Q Consensus 304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~--------------~~~~~ 369 (472)
...++.|+..|+++.++..... . + .+.+. ...+|.||+|||...... ...+.
T Consensus 22 ~~~~~~l~~~G~~~~iv~~~~~-~-----------~-~~~~~-l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~ 87 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDD-E-----------E-DLEQY-LELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA 87 (189)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-h-----------H-HHHHH-HhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence 3567788888888776654432 0 0 11111 156899999999632111 11223
Q ss_pred HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
...++++++.+.+++|.+||.|..+|+.+
T Consensus 88 ~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 88 FELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred HHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 45789999999999999999999998765
No 152
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.02 Score=52.33 Aligned_cols=88 Identities=26% Similarity=0.327 Sum_probs=62.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC-CCcc--hh
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAG--AE 363 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG-G~~~--~~ 363 (472)
|++|+|+=|.--++. .+...|.++|+++.+... .+++ .+.|.||+|| |... ..
T Consensus 1 m~~i~IIDyg~GNL~---Sv~~Aler~G~~~~vs~d-------------------~~~i--~~AD~liLPGVGaf~~am~ 56 (204)
T COG0118 1 MMMVAIIDYGSGNLR---SVKKALERLGAEVVVSRD-------------------PEEI--LKADKLILPGVGAFGAAMA 56 (204)
T ss_pred CCEEEEEEcCcchHH---HHHHHHHHcCCeeEEecC-------------------HHHH--hhCCEEEecCCCCHHHHHH
Confidence 578888877755555 455667778877754322 2334 5689999999 5321 23
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
.+. ...+.+.|++....++++.+||-|..+|.+.+
T Consensus 57 ~L~-~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~S 91 (204)
T COG0118 57 NLR-ERGLIEAIKEAVESGKPFLGICLGMQLLFERS 91 (204)
T ss_pred HHH-hcchHHHHHHHHhcCCCEEEEeHhHHhhhhcc
Confidence 333 33789999999999999999999999998654
No 153
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=96.16 E-value=0.028 Score=65.51 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=73.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc----
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS---- 159 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~---- 159 (472)
..||+|+.++|.+-. .....+|+.+||++..+....= .. | ..+ .+|+.|+++||+...
T Consensus 929 ~p~VaIl~~pG~N~~--~e~~~Af~~aGf~~~~v~~~dl--~~---~------~~l-----~~f~glv~~Ggfsy~D~lg 990 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVP--HGLLAALTNAGFDPRIVSITEL--KK---T------DFL-----DTFSGLIIGGASGTLDSEV 990 (1202)
T ss_pred CCeEEEEeCCCCCCH--HHHHHHHHHcCCceEEEEeccC--CC---C------Cch-----hheEEEEEcCcCCCCccch
Confidence 569999999997744 2557788899999988887641 11 0 011 269999999986321
Q ss_pred ------ccccCChHHHHHHHHHH-hcCCeEEEEch-hhHHhhhcCCCCCC
Q 012037 160 ------VRLRDCEILKKITSKQA-EEKRLYGAICA-APAVTLLPWGLLRR 201 (472)
Q Consensus 160 ------~~l~~~~~~~~~l~~~~-~~~k~I~aic~-g~~~lLa~aGlL~g 201 (472)
..+..++.+.+.+++++ +.++.+.+||+ |-+ +|.+.|++..
T Consensus 991 sg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~~ 1039 (1202)
T TIGR01739 991 GARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVGY 1039 (1202)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCcC
Confidence 22345788899999999 56999999999 966 8999999853
No 154
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.15 E-value=0.021 Score=57.94 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.+||+++=+ |+. ...++.|.+.|+++.++..+. +++++...++|.||++||++.+..
T Consensus 177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIvLSgGPgdp~~-- 233 (360)
T PRK12564 177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT----------------TAEEILALNPDGVFLSNGPGDPAA-- 233 (360)
T ss_pred CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCChHH--
Confidence 357777754 432 357888889999988775442 123332236899999999754432
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+..+++++++.+++++|.+||-|..+|+.+
T Consensus 234 -~~~~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 234 -LDYAIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred -HHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 3677889999988899999999999998754
No 155
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.14 E-value=0.037 Score=59.08 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
.+++|+|+=|-.-+..++ ...|+..++++.++.. .+++ .++|.||+||+......+
T Consensus 5 ~~~~i~iiDyG~GN~~sl---~~al~~~G~~v~~v~~-------------------~~~l--~~~D~lIlpG~gs~~~~m 60 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSV---RNAIRHLGFTIKDVQT-------------------PEDI--LNADRLIFPGVGAFGSAM 60 (538)
T ss_pred CCCeEEEEECCCCCHHHH---HHHHHHCCCeEEEECC-------------------hhhh--ccCCEEEECCCCCHHHHH
Confidence 457888887776666555 5667778888866531 1233 578999999964211111
Q ss_pred --cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 --QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 --~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+..+.+.|+++.+.++++.+||.|..+|+++
T Consensus 61 ~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 61 DVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred HHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 122347788999889999999999999999974
No 156
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.12 E-value=0.013 Score=54.31 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=49.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc-
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR- 163 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~- 163 (472)
|+|+|+=+..-...+ +...|++.|++++++... ++.. .+|.||+||. +......
T Consensus 1 m~i~iid~g~gn~~s---~~~~l~~~g~~~~~v~~~-------------------~~~~--~~d~iIlPG~-G~~~~~~~ 55 (196)
T PRK13170 1 MNVVIIDTGCANLSS---VKFAIERLGYEPVVSRDP-------------------DVIL--AADKLFLPGV-GTAQAAMD 55 (196)
T ss_pred CeEEEEeCCCchHHH---HHHHHHHCCCeEEEECCH-------------------HHhC--CCCEEEECCC-CchHHHHH
Confidence 467766555444444 455888889888877422 1122 5789999994 1221111
Q ss_pred --CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 --DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 --~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
....+.++++ +.+++|.+||.|.. +|+.+
T Consensus 56 ~l~~~~l~~~i~---~~~~PilGIClG~Q-ll~~~ 86 (196)
T PRK13170 56 QLRERELIDLIK---ACTQPVLGICLGMQ-LLGER 86 (196)
T ss_pred HHHHcChHHHHH---HcCCCEEEECHHHH-HHhhh
Confidence 1112334444 45899999999755 67766
No 157
>PLN02335 anthranilate synthase
Probab=96.11 E-value=0.025 Score=53.55 Aligned_cols=91 Identities=7% Similarity=0.015 Sum_probs=60.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
..++|+|+ | +.+.-...+.+.|++.|++++++..+.. .++++...++|.|||-||+..+...
T Consensus 17 ~~~~ilvi--D-~~dsft~~i~~~L~~~g~~~~v~~~~~~---------------~~~~~~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 17 QNGPIIVI--D-NYDSFTYNLCQYMGELGCHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred ccCcEEEE--E-CCCCHHHHHHHHHHHCCCcEEEEECCCC---------------CHHHHHhcCCCEEEEcCCCCChhhc
Confidence 45678887 3 3233344688999999999998855321 2332322468999999998544322
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+++++ ...+.+|.+||-|..+|+.+
T Consensus 79 ---~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 79 ---GISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred ---cchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 123556654 34568999999999999864
No 158
>PRK05637 anthranilate synthase component II; Provisional
Probab=96.08 E-value=0.041 Score=51.53 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
|+||+++=+.+.. ...+++.|++.|++++++..+- .++++....+|.||+-||+..+..
T Consensus 1 ~~~il~iD~~dsf---~~nl~~~l~~~g~~~~v~~~~~----------------~~~~l~~~~~~~iIlsgGPg~~~d-- 59 (208)
T PRK05637 1 MTHVVLIDNHDSF---VYNLVDAFAVAGYKCTVFRNTV----------------PVEEILAANPDLICLSPGPGHPRD-- 59 (208)
T ss_pred CCEEEEEECCcCH---HHHHHHHHHHCCCcEEEEeCCC----------------CHHHHHhcCCCEEEEeCCCCCHHH--
Confidence 4566666442221 2347888999999998886542 123332246899999888754432
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....++++... .+.+|.+||-|..+|+.+
T Consensus 60 -~~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 60 -AGNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred -hhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 223356665443 579999999999999976
No 159
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.03 E-value=0.014 Score=48.84 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=58.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--ccccc
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG--SVRLR 163 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~--~~~l~ 163 (472)
+|+|.-.+|.+...+......|+... .++.++.+. +. +..++ ..+|.||+|||... +..+.
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~---I~---------~~~~~----~~ad~lVlPGGa~~~~~~~L~ 63 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE---LA---------VGPWE----SKTALLVVPGGADLPYCRALN 63 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH---Hh---------cCchh----hCCCEEEECCCChHHHHHHHH
Confidence 47788888999999888888888754 444444331 11 11111 36999999998422 22233
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhh
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLL 194 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa 194 (472)
.. . .+.|+++.++++++.+||.| ++ ++
T Consensus 64 ~~-g-~~~i~~~v~~g~p~LGIClG-Ay-~a 90 (114)
T cd03144 64 GK-G-NRRIRNFVRNGGNYLGICAG-AY-LA 90 (114)
T ss_pred hh-C-cHHHHHHHHCCCcEEEEecC-cc-ce
Confidence 22 3 78888888999999999996 53 44
No 160
>PRK05670 anthranilate synthase component II; Provisional
Probab=95.98 E-value=0.022 Score=52.40 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHH
Q 012037 300 EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK 379 (472)
Q Consensus 300 ~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~ 379 (472)
+.-.....+.|++.|++++++..+.. . ...+++ .++|.||+.||...+.. .....++|+++
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~-~-----------~~~~~~---~~~dglIlsgGpg~~~d---~~~~~~~l~~~- 69 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEI-T-----------LEEIEA---LNPDAIVLSPGPGTPAE---AGISLELIREF- 69 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCC-C-----------HHHHHh---CCCCEEEEcCCCCChHH---cchHHHHHHHh-
Confidence 33455678889999999998877642 0 111222 34899999888754432 23456677764
Q ss_pred HcCCeEEEEchhHHHHHHc
Q 012037 380 VAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 380 ~~g~~v~aic~G~~lLA~a 398 (472)
.++++|.+||-|..+|+.+
T Consensus 70 ~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 70 AGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred cCCCCEEEECHHHHHHHHH
Confidence 5678999999999999865
No 161
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.94 E-value=0.03 Score=51.02 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCC
Q 012037 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 383 (472)
Q Consensus 304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~ 383 (472)
..+.+.|++.|++++++..+.+ .++....++|.||++||...... .....+. +...+.++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~----------------~~~~~~~~~dgvIl~Gg~~~~~~-~~~~~~~---~~~~~~~~ 71 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTP----------------LEEIKLKNPKGIILSGGPSSVYE-EDAPRVD---PEIFELGV 71 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCC----------------hhhhcccCCCEEEECCCcccccc-cccchhh---HHHHhcCC
Confidence 3468888888988887765432 11112267999999999642211 1112333 33445699
Q ss_pred eEEEEchhHHHHHHc
Q 012037 384 IYGAVCSSPIVLHKH 398 (472)
Q Consensus 384 ~v~aic~G~~lLA~a 398 (472)
++.+||-|..+|+.+
T Consensus 72 PilGIC~G~Qll~~~ 86 (181)
T cd01742 72 PVLGICYGMQLIAKA 86 (181)
T ss_pred CEEEEcHHHHHHHHh
Confidence 999999999999985
No 162
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.94 E-value=0.02 Score=60.21 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=33.9
Q ss_pred CcccEEEEcCCCcchh-cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 348 SVYDLIILPGGVAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 348 ~~~D~livpGG~~~~~-~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.++|+||+|||..... .+ ...+.++|+++ |++|.+||.|-.+|++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 5789999999852101 11 24566666665 99999999999999987
No 163
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.88 E-value=0.022 Score=52.92 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc--cCChHHHHHHHHHHhc
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL--RDCEILKKITSKQAEE 178 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l--~~~~~~~~~l~~~~~~ 178 (472)
......|++.|++++++... ++.. ++|.||+||+....... .....+.++|+++.+.
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~-------------------~~l~--~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~ 71 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDP-------------------EEIA--GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEK 71 (199)
T ss_pred HHHHHHHHHCCCcEEEEcCh-------------------HHhc--cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHC
Confidence 44466888889888776211 1222 68999999962211111 1123467889999999
Q ss_pred CCeEEEEchhhHHhhhcC
Q 012037 179 KRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 179 ~k~I~aic~g~~~lLa~a 196 (472)
+++|.+||.|-. +|+.+
T Consensus 72 ~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 72 KQPVLGICLGMQ-LLFES 88 (199)
T ss_pred CCCEEEECHhHH-Hhhhh
Confidence 999999999755 78876
No 164
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.86 E-value=0.038 Score=58.99 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=59.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR- 161 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~- 161 (472)
.+++|+|+=+..=+.. .....|++.|+++.++... .+. ..+|.||+||+. ....
T Consensus 5 ~~~~i~iiDyG~GN~~---sl~~al~~~G~~v~~v~~~-------------------~~l--~~~D~lIlpG~g-s~~~~ 59 (538)
T PLN02617 5 ADSEVTLLDYGAGNVR---SVRNAIRHLGFTIKDVQTP-------------------EDI--LNADRLIFPGVG-AFGSA 59 (538)
T ss_pred CCCeEEEEECCCCCHH---HHHHHHHHCCCeEEEECCh-------------------hhh--ccCCEEEECCCC-CHHHH
Confidence 4678887766544444 4478888899888665321 122 269999999973 3211
Q ss_pred --ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 162 --LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 162 --l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...+..+.+.|+++.+.++++.+||.|.+ +|+++
T Consensus 60 m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 60 MDVLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred HHHHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 11223467788999999999999999755 78864
No 165
>PRK00784 cobyric acid synthase; Provisional
Probab=95.85 E-value=0.018 Score=61.08 Aligned_cols=88 Identities=17% Similarity=0.073 Sum_probs=62.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR- 161 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~- 161 (472)
+.||+|.-+|...-. .=++.|++ +|+++.++++.. +.+ ++|+|++|||......
T Consensus 251 ~~~i~v~~~~~a~~f---~nl~~l~~~~g~~v~~~s~~~-------------------~l~--~~d~lilpGg~~~~~~~ 306 (488)
T PRK00784 251 ALRIAVIRLPRISNF---TDFDPLRAEPGVDVRYVRPGE-------------------PLP--DADLVILPGSKNTIADL 306 (488)
T ss_pred ceEEEEEeCCCcCCc---cChHHHhhcCCCeEEEECCcc-------------------ccc--cCCEEEECCccchHHHH
Confidence 358999997743222 34677877 899988887631 223 5899999999632222
Q ss_pred -ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 162 -LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 162 -l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+..+..+.+.|+++.+.|++|.++|.| ..+|++.
T Consensus 307 ~~~~~~~l~~~i~~~~~~g~pilg~C~G-~~~L~~~ 341 (488)
T PRK00784 307 AWLRESGWDEAIRAHARRGGPVLGICGG-YQMLGRR 341 (488)
T ss_pred HHHHHcCHHHHHHHHHHcCCeEEEECHH-HHHHhhh
Confidence 334556888999999999999999996 5467765
No 166
>PRK13566 anthranilate synthase; Provisional
Probab=95.84 E-value=0.062 Score=59.44 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=68.3
Q ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 284 FDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 284 ~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
....++|+|+=+.. .-...+.+.|+..|+++.++..+.. +..++. .++|.|||-||.+.+.
T Consensus 523 ~~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-------------~~~~~~---~~~DgVVLsgGpgsp~ 583 (720)
T PRK13566 523 VGEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-------------EEMLDR---VNPDLVVLSPGPGRPS 583 (720)
T ss_pred CCCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-------------hhHhhh---cCCCEEEECCCCCChh
Confidence 34567888887664 3366888999999999998877642 111222 4689999987764332
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+..+.+++++..+++++|.+||-|..+|+.+
T Consensus 584 ----d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 584 ----DFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred ----hCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 2346799999999999999999999999876
No 167
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.091 Score=48.71 Aligned_cols=92 Identities=20% Similarity=0.087 Sum_probs=57.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
++|+|+=+.+ +. .-.+...+++.|+....+-+... +........+|++||.||. ......+
T Consensus 2 ~~ilIld~g~-q~--~~li~r~~re~g~v~~e~~~~~~---------------~~~~~~~~~~~giIlsGgp-~sv~~~~ 62 (198)
T COG0518 2 RKILILDFGG-QY--LGLIARRLRELGYVYSEIVPYTG---------------DAEELPLDSPDGIIISGGP-MSVYDED 62 (198)
T ss_pred cEEEEEeCCC-cH--hHHHHHHHHHcCCceEEEEeCCC---------------CcccccccCCCEEEEcCCC-CCCcccc
Confidence 3455553333 22 23456677788864444333322 1223333356999999994 3333334
Q ss_pred --ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 --CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 --~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+...+||++....+|+|.+||-|.+ +||.+
T Consensus 63 ~w~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~ 95 (198)
T COG0518 63 PWLPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA 95 (198)
T ss_pred ccchhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence 57889999999999999999999766 66654
No 168
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=95.80 E-value=0.033 Score=51.50 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=56.6
Q ss_pred eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHH
Q 012037 294 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKK 373 (472)
Q Consensus 294 ~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~ 373 (472)
+-|..+.... ..++.|+..|++++++..+.. .+.++...++|.+++-||+..+.+ +....+
T Consensus 4 ~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~iilsgGp~~~~~---~~~~~~ 64 (193)
T PRK08857 4 MIDNYDSFTY-NLYQYFCELGAQVKVVRNDEI---------------DIDGIEALNPTHLVISPGPCTPNE---AGISLQ 64 (193)
T ss_pred EEECCCCcHH-HHHHHHHHCCCcEEEEECCCC---------------CHHHHhhCCCCEEEEeCCCCChHH---CcchHH
Confidence 3344433333 477888999999998876632 112111135789999998754432 233456
Q ss_pred HHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 374 LLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 374 ~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+++. .+++.+|.+||-|..+|+.+
T Consensus 65 ~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 65 AIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred HHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 7765 47889999999999999875
No 169
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=95.79 E-value=0.034 Score=52.34 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 180 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k 180 (472)
....+.|++.|+++.++..+.. .. .+ ..+. ...||+|||.||...+. ++....+|+++..++++
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~-~~---------~~--~~~~-~~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~ 77 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDP-RL---------AD--EAAV-AAQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGT 77 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCc-CH---------HH--HHHh-hcCCCEEEECCCCCChh---hcchHHHHHHHHHhCCC
Confidence 3567889999999999876632 00 11 1111 12699999999943322 33556789999999999
Q ss_pred eEEEEchhhHHhhhcC
Q 012037 181 LYGAICAAPAVTLLPW 196 (472)
Q Consensus 181 ~I~aic~g~~~lLa~a 196 (472)
+|.+||-|.+ +|+.+
T Consensus 78 PiLGIC~G~Q-lla~a 92 (214)
T PRK07765 78 PLLGVCLGHQ-AIGVA 92 (214)
T ss_pred CEEEEccCHH-HHHHH
Confidence 9999999866 55543
No 170
>PRK05380 pyrG CTP synthetase; Validated
Probab=95.75 E-value=0.063 Score=56.64 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=90.5
Q ss_pred eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccC-Ccch-hhhcccccccccCCCCEEEEEeCC-CCCHHHH
Q 012037 227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNA-DNSL-KKEEFNEVEWFFDRMPRVLIPIAN-GSEEIEI 303 (472)
Q Consensus 227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~-~~~~-~~~~~n~~~~~~~~~~~V~il~~~-g~~~~e~ 303 (472)
..+++.+-...+..+.=+.+-+ +.+.+.+.+.|-++.. ...+ |.+-.+.+. ......+|+++-=- ...+ .+
T Consensus 231 ~~~vi~~~d~~~iy~vPl~l~~----q~~~~~i~~~l~l~~~~~~~~~w~~~~~~~~-~~~~~v~IalVGKY~~l~D-aY 304 (533)
T PRK05380 231 EEAVISAPDVDSIYEVPLLLHE----QGLDDIVLERLGLEAPEPDLSEWEELVERLK-NPKGEVTIALVGKYVELPD-AY 304 (533)
T ss_pred HHHEEEcCCCccHHhhhHHHHH----CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHh-CCCCceEEEEEeCccCCcH-HH
Confidence 4578888877776666655544 4556666777777531 1211 222222111 12344678877543 3333 36
Q ss_pred HHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHH
Q 012037 304 VTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK 379 (472)
Q Consensus 304 ~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~ 379 (472)
-.+.+.|+.++ .++++.-.+.. .+... ...+.+ ..+|.|++|||.+ .. ..+..+++++...
T Consensus 305 ~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~L--~~~DGIIlpGGfG-~~---~~~g~i~~i~~a~ 369 (533)
T PRK05380 305 KSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAELL--KGVDGILVPGGFG-ER---GIEGKILAIRYAR 369 (533)
T ss_pred HHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhHh--hcCCEEEecCCCC-cc---ccccHHHHHHHHH
Confidence 77888888876 45555555543 22211 112223 6789999999974 22 2345678888888
Q ss_pred HcCCeEEEEchhHHHHH
Q 012037 380 VAGRIYGAVCSSPIVLH 396 (472)
Q Consensus 380 ~~g~~v~aic~G~~lLA 396 (472)
++++++.+||-|..+++
T Consensus 370 e~~iPiLGIClGmQll~ 386 (533)
T PRK05380 370 ENNIPFLGICLGMQLAV 386 (533)
T ss_pred HCCCcEEEEchHHHHHH
Confidence 99999999999998765
No 171
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=95.74 E-value=0.016 Score=53.66 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc---ccCChHHHHHHHHH
Q 012037 99 EAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR---LRDCEILKKITSKQ 175 (472)
Q Consensus 99 e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~---l~~~~~~~~~l~~~ 175 (472)
.+..+.+.|+..|++++++..+. +. .++|.|++||+...... +.... ...+++++
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~~-------------------~l--~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~ 67 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDSK-------------------EA--ELADKLILPGVGAFGAAMARLRENG-LDLFVELV 67 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCHH-------------------Hh--ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHH
Confidence 45677888899898888776220 12 26999999995211111 11111 33455888
Q ss_pred HhcCCeEEEEchhhHHhhhcC
Q 012037 176 AEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 176 ~~~~k~I~aic~g~~~lLa~a 196 (472)
++.+++|.+||.|.+ +|+.+
T Consensus 68 ~~~~~pvlGiC~G~Q-ll~~~ 87 (196)
T TIGR01855 68 VRLGKPVLGICLGMQ-LLFER 87 (196)
T ss_pred HhCCCCEEEECHHHH-Hhhhc
Confidence 899999999999755 78887
No 172
>PRK00758 GMP synthase subunit A; Validated
Probab=95.73 E-value=0.034 Score=50.89 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=47.3
Q ss_pred HHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcc-cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 306 IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVY-DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 306 ~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~-D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
+.+.|++.|+++.++..+. ..+++ .++ |.|+++||. ... ....+.+||+ +.+++
T Consensus 15 i~~~l~~~g~~~~~~~~~~----------------~~~~l--~~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P 69 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTT----------------PVEEI--KAFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP 69 (184)
T ss_pred HHHHHHHcCCcEEEEECCC----------------CHHHH--hhcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence 4677888888877665332 12333 446 999999996 222 2234556776 45899
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||-|..+|+.+
T Consensus 70 ilGIC~G~Q~L~~a 83 (184)
T PRK00758 70 ILGICLGHQLIAKA 83 (184)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999999976
No 173
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=95.72 E-value=0.051 Score=51.68 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=64.6
Q ss_pred CCCEEEEEeCCCC--CHHH-HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANGS--EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g~--~~~e-~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
..+||+++-+-.. +.-+ +-...+.|+..|++++.+-... + ..+.+ .+.|+|+|+||. .
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~--------------d-~~~~l--~~ad~I~v~GGn--t 90 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA--------------D-PVAAI--ENAEAIFVGGGN--T 90 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch--------------h-hHHHH--hcCCEEEECCcc--H
Confidence 3467888877542 2222 3457888999998877552211 1 12223 567999999995 2
Q ss_pred hc---ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 363 ER---LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 363 ~~---~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
.. ..+...+.+.|++..++|+++++.|+|+.+++...
T Consensus 91 ~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 91 FQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 22 23344677889999999999999999999987644
No 174
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=95.71 E-value=0.047 Score=50.58 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
.+.+.|++.++++.++-.+.. .++++...++|.||+-||+..+... ....+.++++ +.+++
T Consensus 14 nl~~~l~~~g~~v~v~~~~~~---------------~~~~~~~~~~d~iIlsgGP~~p~~~---~~~~~~i~~~-~~~~P 74 (195)
T PRK07649 14 NLVQFLGELGQELVVKRNDEV---------------TISDIENMKPDFLMISPGPCSPNEA---GISMEVIRYF-AGKIP 74 (195)
T ss_pred HHHHHHHHCCCcEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChHhC---CCchHHHHHh-cCCCC
Confidence 478899999999988865432 1223322468999999998554432 2245556643 57899
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
|.+||-|..+|+.+
T Consensus 75 vLGIClG~Qlla~~ 88 (195)
T PRK07649 75 IFGVCLGHQSIAQV 88 (195)
T ss_pred EEEEcHHHHHHHHH
Confidence 99999999999876
No 175
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=95.71 E-value=0.022 Score=59.08 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=62.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc--hhcc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG--AERL 365 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~--~~~~ 365 (472)
.||+|.-=.-|+.+ +---.+.|+.+ .++..+|+-.+ +++ +++|+|++|||... ...+
T Consensus 234 ~~iavA~D~AF~Fy-Y~enl~~L~~~-aelv~fSPl~~-----------------~~l--p~~D~l~lpGG~~e~~~~~L 292 (433)
T PRK13896 234 PTVAVARDAAFCFR-YPATIERLRER-ADVVTFSPVAG-----------------DPL--PDCDGVYLPGGYPELHADAL 292 (433)
T ss_pred CeEEEEEcCcccee-CHHHHHHHHhc-CcEEEEcCCCC-----------------CCC--CCCCEEEeCCCchhhHHHHH
Confidence 58888653333322 23345778888 89999988543 112 35799999999732 1223
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+... +.|+++.++|++|.++|.|-.+|.+.
T Consensus 293 ~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 293 ADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred HhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 444344 88999999999999999999999863
No 176
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.60 E-value=0.051 Score=54.96 Aligned_cols=89 Identities=24% Similarity=0.213 Sum_probs=63.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+|+|.--+|....++...++.|++. .|.|..++.+ . +..+... ..+|++|+|||......
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~---~--------l~~~pw~-----~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTAD---E--------LLNEPWQ-----SKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHH---H--------hhcCccc-----cCCcEEEECCCcchHHH
Confidence 57889989999999999999999864 4666666433 1 2211111 25889999999432222
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhh
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAP 189 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~ 189 (472)
..-++.-.+.||++.++|+...+||+|+
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGa 92 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGA 92 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcch
Confidence 2225666888999999999999999964
No 177
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=95.55 E-value=0.033 Score=51.20 Aligned_cols=87 Identities=8% Similarity=0.039 Sum_probs=58.6
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|+++.... .+++.|++.|+++.++..+.. + +++.....||.||+-||...+. ++...
T Consensus 2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~-~--------------~~~~~~~~~d~iils~GPg~p~---~~~~~ 62 (187)
T PRK08007 2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL-T--------------LADIDALKPQKIVISPGPCTPD---EAGIS 62 (187)
T ss_pred EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC-C--------------HHHHHhcCCCEEEEcCCCCChH---HCCcc
Confidence 566676665553 578889999999988876531 1 1112222589999999854443 33445
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.++++. ++.+++|.+||-|-+ +|+.+
T Consensus 63 ~~~~~~-~~~~~PiLGIClG~Q-~la~a 88 (187)
T PRK08007 63 LDVIRH-YAGRLPILGVCLGHQ-AMAQA 88 (187)
T ss_pred HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 667775 678899999999765 66664
No 178
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=95.53 E-value=0.012 Score=53.26 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=35.7
Q ss_pred cccEEEEcCCcc-ccccccCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhc
Q 012037 146 VFDLIALPGGMP-GSVRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLP 195 (472)
Q Consensus 146 ~~D~vivpGG~~-~~~~l~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~ 195 (472)
+.|+||||||.. ....+.....+.+-|+++.+.| ++|.+.|+| ..+|++
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~ 83 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK 83 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence 589999999952 2334556678889999999998 999999995 656776
No 179
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.49 E-value=0.066 Score=49.32 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=56.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK 367 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~ 367 (472)
|+|+=|..-+..++ ...|++.++++.++... +++ .++|.||+||+..-...+ .+
T Consensus 2 i~iidyg~gN~~s~---~~al~~~g~~~~~v~~~-------------------~~l--~~~D~lIlPG~g~~~~~~~~L~ 57 (192)
T PRK13142 2 IVIVDYGLGNISNV---KRAIEHLGYEVVVSNTS-------------------KII--DQAETIILPGVGHFKDAMSEIK 57 (192)
T ss_pred EEEEEcCCccHHHH---HHHHHHcCCCEEEEeCH-------------------HHh--ccCCEEEECCCCCHHHHHHHHH
Confidence 77888877776555 55566677777765322 233 468999999984211111 11
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
...+.+.|++ ..++++.+||.|-.+|++..
T Consensus 58 ~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 58 RLNLNAILAK--NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred HCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence 2236677776 56899999999999998654
No 180
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=95.48 E-value=0.043 Score=50.43 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcC
Q 012037 100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 179 (472)
Q Consensus 100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~ 179 (472)
...+.+.|++.|++++++..+.. .++...-++|.|++|||..... +....+|+++.++.+
T Consensus 11 ~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~~~~~~glii~Gg~~~~~----~~~~~~~i~~~~~~~ 70 (188)
T TIGR00888 11 TQLIARRLRELGVYSELVPNTTP----------------LEEIREKNPKGIILSGGPSSVY----AENAPRADEKIFELG 70 (188)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCC----------------HHHHhhcCCCEEEECCCCCCcC----cCCchHHHHHHHhCC
Confidence 45677889999999888765521 1111111467999999943221 223567899999999
Q ss_pred CeEEEEchhhHHhhhcC
Q 012037 180 RLYGAICAAPAVTLLPW 196 (472)
Q Consensus 180 k~I~aic~g~~~lLa~a 196 (472)
++|.+||-|-. +|+.+
T Consensus 71 ~PilGIC~G~Q-ll~~~ 86 (188)
T TIGR00888 71 VPVLGICYGMQ-LMAKQ 86 (188)
T ss_pred CCEEEECHHHH-HHHHh
Confidence 99999999766 67665
No 181
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=95.47 E-value=0.042 Score=48.32 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-c
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-R 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~ 364 (472)
.+.-|+++...|.....+..+-..+....|.+.+ .+.+-++-.|+ .+.|++|||||..... .
T Consensus 10 tn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~---------------~~~tVKT~~D~--aq~DaLIIPGGEST~msl 72 (226)
T KOG3210|consen 10 TNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKL---------------SVMTVKTKNDL--AQCDALIIPGGESTAMSL 72 (226)
T ss_pred cceEEeeeehhhHHHHHHHHHHHhhccCcceEEE---------------EEEeecCHHHH--hhCCEEEecCCchhHHHH
Confidence 4566899998886555554444344333344431 22333345566 6789999999963222 2
Q ss_pred ccccHHHHHHHHHHHHcC-CeEEEEchhHHHHHHc
Q 012037 365 LQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~a 398 (472)
+.+-..|.+-|.++..++ +++-+.|+|..+|.+.
T Consensus 73 ia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 73 IAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred HHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 334445888888888777 9999999999998753
No 182
>CHL00101 trpG anthranilate synthase component 2
Probab=95.46 E-value=0.046 Score=50.38 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCC
Q 012037 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGR 383 (472)
Q Consensus 304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~ 383 (472)
..+.+.|+..|+++.++..+.. .+.++...++|.|||-||.....+.. +...+.+..++++
T Consensus 13 ~~l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dgiiisgGpg~~~~~~----~~~~i~~~~~~~~ 73 (190)
T CHL00101 13 YNLVQSLGELNSDVLVCRNDEI---------------DLSKIKNLNIRHIIISPGPGHPRDSG----ISLDVISSYAPYI 73 (190)
T ss_pred HHHHHHHHhcCCCEEEEECCCC---------------CHHHHhhCCCCEEEECCCCCChHHCc----chHHHHHHhcCCC
Confidence 4578889999988877655431 22233224689999999985443322 2233334467889
Q ss_pred eEEEEchhHHHHHHc
Q 012037 384 IYGAVCSSPIVLHKH 398 (472)
Q Consensus 384 ~v~aic~G~~lLA~a 398 (472)
++.+||-|..+|+.+
T Consensus 74 PiLGIClG~Qlla~~ 88 (190)
T CHL00101 74 PILGVCLGHQSIGYL 88 (190)
T ss_pred cEEEEchhHHHHHHH
Confidence 999999999999875
No 183
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=95.35 E-value=0.1 Score=53.17 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.+||+++=+ |+. ..+.+.|++.|+++.++-.+- +.+++...++|.||+.||++.+.
T Consensus 192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~dgIilSgGPg~p~--- 247 (382)
T CHL00197 192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS----------------PYQDILSYQPDGILLSNGPGDPS--- 247 (382)
T ss_pred CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC----------------CHHHHhccCCCEEEEcCCCCChh---
Confidence 467877765 554 248888999999998874332 22333224689999999975433
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+++.++++.+.+.+|.+||-|-.+|+.+
T Consensus 248 ~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 248 AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 23456777777777789999999999998865
No 184
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=95.29 E-value=0.097 Score=57.85 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=65.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
...++|+|+=+.. .-...+.+.|++.|+++.++..... +..++ . .++|.|||-||.+...
T Consensus 514 ~~~~~IlVID~gd---s~~~~l~~~L~~~G~~v~vv~~~~~-------------~~~~~-~--~~~DgLILsgGPGsp~- 573 (717)
T TIGR01815 514 GEGRRILLVDHED---SFVHTLANYLRQTGASVTTLRHSHA-------------EAAFD-E--RRPDLVVLSPGPGRPA- 573 (717)
T ss_pred CCCCEEEEEECCC---hhHHHHHHHHHHCCCeEEEEECCCC-------------hhhhh-h--cCCCEEEEcCCCCCch-
Confidence 3567899886553 3356889999999999987754421 10111 1 4689999977764332
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+....++|++..+.+++|.+||-|..+|+.+
T Consensus 574 ---d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 574 ---DFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred ---hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 3355788888889999999999999999986
No 185
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=95.28 E-value=0.061 Score=50.47 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCCcHHH-HHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc--
Q 012037 83 PPKKVLVPVGFGTEEME-AVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-- 158 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e-~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-- 158 (472)
...||+++-....+..+ +.....+|++. |+++..+.... .++ ..+.+. ..|+|++|||...
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~------------~~~-~~~~l~--~ad~I~l~GG~~~~~ 94 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD------------TED-PLDALL--EADVIYVGGGNTFNL 94 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC------------ccc-HHHHHh--cCCEEEECCchHHHH
Confidence 35689988876655444 56688899999 98877665321 111 012223 6999999998421
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...+ ....+.+.|++.+++|++++++|+| +.++.+.
T Consensus 95 ~~~l-~~~~l~~~l~~~~~~g~~i~G~SAG-a~i~~~~ 130 (212)
T cd03146 95 LAQW-REHGLDAILKAALERGVVYIGWSAG-SNCWFPS 130 (212)
T ss_pred HHHH-HHcCHHHHHHHHHHCCCEEEEECHh-HHhhCCC
Confidence 1122 2335777888889999999999996 5567664
No 186
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=95.26 E-value=0.044 Score=50.50 Aligned_cols=87 Identities=8% Similarity=0.062 Sum_probs=57.2
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|+.+... ..+++.|++.|++++++..+.. . +++.....+|+||+-||..++. ++...
T Consensus 2 il~id~~dsf~-~nl~~~l~~~~~~~~v~~~~~~-~--------------~~~~~~~~~~~iilsgGP~~~~---~~~~~ 62 (191)
T PRK06774 2 LLLIDNYDSFT-YNLYQYFCELGTEVMVKRNDEL-Q--------------LTDIEQLAPSHLVISPGPCTPN---EAGIS 62 (191)
T ss_pred EEEEECCCchH-HHHHHHHHHCCCcEEEEeCCCC-C--------------HHHHHhcCCCeEEEcCCCCChH---hCCCc
Confidence 45556555443 3578889999999998886632 1 1112212589999999854443 23345
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+++. ++.+++|.+||-|-+ +|+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIC~G~Q-lla~~ 88 (191)
T PRK06774 63 LAVIRH-FADKLPILGVCLGHQ-ALGQA 88 (191)
T ss_pred hHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 566654 577999999999766 67765
No 187
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.25 E-value=0.028 Score=52.70 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=56.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc---hhccc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG---AERLQ 366 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~---~~~~~ 366 (472)
|+|+=|..-+ +......|++.++++.+++. .+++ .++|.||+||+... ...+
T Consensus 2 i~iidyg~gN---l~s~~~al~~~~~~~~~~~~-------------------~~~l--~~~d~iIlPG~g~~~~~~~~l- 56 (210)
T PRK14004 2 IAILDYGMGN---IHSCLKAVSLYTKDFVFTSD-------------------PETI--ENSKALILPGDGHFDKAMENL- 56 (210)
T ss_pred EEEEECCCch---HHHHHHHHHHcCCeEEEECC-------------------HHHh--ccCCEEEECCCCchHHHHHHH-
Confidence 5666555443 34555666666666654422 2333 46899999997521 1222
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+.++|+++.++++++.+||.|..+|++.
T Consensus 57 ~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 57 NSTGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred HHcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 22358889999999999999999999999985
No 188
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.20 E-value=0.066 Score=48.71 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 180 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k 180 (472)
..+.+.|++.|+++.++..+.+ . ++....+||+||+|||...... ...+. +.++..+.++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~----------~------~~~~~~~~dgvIl~Gg~~~~~~-~~~~~---~~~~~~~~~~ 71 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTP----------L------EEIKLKNPKGIILSGGPSSVYE-EDAPR---VDPEIFELGV 71 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCC----------h------hhhcccCCCEEEECCCcccccc-cccch---hhHHHHhcCC
Confidence 4568889999999888876532 0 0112236999999999432211 11122 3344456699
Q ss_pred eEEEEchhhHHhhhcC
Q 012037 181 LYGAICAAPAVTLLPW 196 (472)
Q Consensus 181 ~I~aic~g~~~lLa~a 196 (472)
++.+||-|-+ +|+.+
T Consensus 72 PilGIC~G~Q-ll~~~ 86 (181)
T cd01742 72 PVLGICYGMQ-LIAKA 86 (181)
T ss_pred CEEEEcHHHH-HHHHh
Confidence 9999999766 67764
No 189
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=95.20 E-value=0.095 Score=53.11 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=60.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+||+++=+ |+. ...+..|.+.|+++.++-.+. +++++....+|.||+.||+..+. .
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~pDGIiLSgGPgdp~---~ 229 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT----------------DAEEIKKYNPDGIFLSNGPGDPA---A 229 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC----------------CHHHHHhhCCCEEEECCCCCCHH---H
Confidence 46777644 544 358888999999987774322 23333223469999999975433 3
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+++++++.+ +++|.+||-|..+|+.+
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 4567788888876 89999999999999865
No 190
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=95.05 E-value=0.061 Score=49.67 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=57.8
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|+.+.... .+.+.|++.|+.++++..+.+ .. . .+.+. ++|.+++-||..++. ++...
T Consensus 2 il~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~-~~--------~---~~~~~---~~~~iilsgGp~~~~---~~~~~ 62 (193)
T PRK08857 2 LLMIDNYDSFTY-NLYQYFCELGAQVKVVRNDEI-DI--------D---GIEAL---NPTHLVISPGPCTPN---EAGIS 62 (193)
T ss_pred EEEEECCCCcHH-HHHHHHHHCCCcEEEEECCCC-CH--------H---HHhhC---CCCEEEEeCCCCChH---HCcch
Confidence 556666655543 578999999999999887633 11 0 01122 488999988843433 33445
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.++++. ++.+++|.+||-|.+ +|+.+
T Consensus 63 ~~~i~~-~~~~~PiLGIClG~Q-lia~a 88 (193)
T PRK08857 63 LQAIEH-FAGKLPILGVCLGHQ-AIAQV 88 (193)
T ss_pred HHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 677765 678999999999866 56654
No 191
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=95.03 E-value=0.11 Score=52.55 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.++|+++=+ |+ -...++.|+..|+++.++-.+. .++++....+|.||++||+..+.
T Consensus 167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~----------------~~~~i~~~~~DGIiLsgGPgdp~--- 222 (354)
T PRK12838 167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDT----------------SLEEIKNLNPDGIVLSNGPGDPK--- 222 (354)
T ss_pred CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEEcCCCCChH---
Confidence 357777644 42 3567788888899988775432 12333224689999999975432
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....+++++++.++ ++|.+||-|..+|+.+
T Consensus 223 ~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 223 ELQPYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred HhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 234567888888766 9999999999999854
No 192
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=94.92 E-value=0.12 Score=52.44 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.+||+++=+ |+. ...++.|++.|+++.++..+. . +++....++|.|+++||..++.
T Consensus 177 ~~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~--~--------------~~~i~~~~~DGIvLSgGPgdp~--- 232 (360)
T PRK12564 177 KYKVVAIDF-GVK----RNILRELAERGCRVTVVPATT--T--------------AEEILALNPDGVFLSNGPGDPA--- 232 (360)
T ss_pred CCEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC--C--------------HHHHHhcCCCEEEEeCCCCChH---
Confidence 457777644 443 357888899999998886552 1 1111112599999999843332
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.++..+++++++.+++++|.+||-|.+ +|+.+
T Consensus 233 ~~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a 264 (360)
T PRK12564 233 ALDYAIEMIRELLEKKIPIFGICLGHQ-LLALA 264 (360)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 236778999999999999999999866 45543
No 193
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=94.88 E-value=0.052 Score=57.36 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=56.8
Q ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--
Q 012037 288 PRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-- 364 (472)
Q Consensus 288 ~~V~il~~~g-~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-- 364 (472)
.+|+|+-+|. |+.. =+|.|+.. +...+++.. +++ ++.|+|++|||......
T Consensus 248 ~~Iav~~~~~~~nf~----~~~~L~~~--~~~~f~~~~------------------~~l--~~~d~lilpGg~~~~~~~~ 301 (475)
T TIGR00313 248 IRIGVVRLPRISNFT----DFEPLRYE--AFVKFLDLD------------------DSL--TGCDAVIIPGSKSTIADLY 301 (475)
T ss_pred cEEEEEcCCcccCcc----ChHHHhhC--CCeEEeCCc------------------ccc--ccCCEEEECCcchHHHHHH
Confidence 5888888663 4444 34555554 233333332 123 46799999999732222
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
+.++..+.+.|+++.++|++|.++|.|-.+|.+
T Consensus 302 ~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 302 ALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK 334 (475)
T ss_pred HHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence 224555788999999999999999999999998
No 194
>PRK05670 anthranilate synthase component II; Provisional
Probab=94.87 E-value=0.086 Score=48.48 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=55.4
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|..+ .-...+.+.|++.|++++++..+.. .. ..+++. ++|.||+-||..++. +....
T Consensus 2 iliid~~d-~f~~~i~~~l~~~g~~~~v~~~~~~-~~-----------~~~~~~---~~dglIlsgGpg~~~---d~~~~ 62 (189)
T PRK05670 2 ILLIDNYD-SFTYNLVQYLGELGAEVVVYRNDEI-TL-----------EEIEAL---NPDAIVLSPGPGTPA---EAGIS 62 (189)
T ss_pred EEEEECCC-chHHHHHHHHHHCCCcEEEEECCCC-CH-----------HHHHhC---CCCEEEEcCCCCChH---HcchH
Confidence 34444332 3345678889999999999887632 10 011122 489999988843442 22345
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+++++ ...+++|.+||-|.+ +|+.+
T Consensus 63 ~~~l~~-~~~~~PvLGIClG~Q-lla~a 88 (189)
T PRK05670 63 LELIRE-FAGKVPILGVCLGHQ-AIGEA 88 (189)
T ss_pred HHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 677776 467799999999766 66665
No 195
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=94.81 E-value=0.092 Score=48.30 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=55.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|..+-.. ..+.+.|++.|+++.++..+.- .+ ++....++|.|||-||...+. ++...
T Consensus 2 il~id~~dsft-~~~~~~l~~~g~~v~v~~~~~~-~~--------------~~~~~~~~d~iilsgGpg~p~---~~~~~ 62 (188)
T TIGR00566 2 VLMIDNYDSFT-YNLVQYFCELGAEVVVKRNDSL-TL--------------QEIEALLPLLIVISPGPCTPN---EAGIS 62 (188)
T ss_pred EEEEECCcCHH-HHHHHHHHHcCCceEEEECCCC-CH--------------HHHHhcCCCEEEEcCCCCChh---hcchh
Confidence 44445544443 3567888888999988775531 11 111112589999988843433 22334
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.++++++ +++++|.+||-|-+ +|+.+
T Consensus 63 ~~~i~~~-~~~~PvLGIC~G~Q-ll~~~ 88 (188)
T TIGR00566 63 LEAIRHF-AGKLPILGVCLGHQ-AMGQA 88 (188)
T ss_pred HHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence 7788876 67899999999766 56654
No 196
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=94.73 E-value=0.12 Score=47.32 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 180 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k 180 (472)
..+.+.|++.|++++++..+.. . . . +.+. ..||+||+.||..... + ......+++...+++
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~-~-~------~-----~~~~--~~~dgvil~gG~~~~~---~-~~~~~~i~~~~~~~~ 72 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEI-T-L------E-----ELEL--LNPDAIVISPGPGHPE---D-AGISLEIIRALAGKV 72 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCC-C-H------H-----HHhh--cCCCEEEECCCCCCcc---c-chhHHHHHHHHhcCC
Confidence 3467888899999998887643 1 0 0 0112 3699999977733221 1 224555666677889
Q ss_pred eEEEEchhhHHhhhcC
Q 012037 181 LYGAICAAPAVTLLPW 196 (472)
Q Consensus 181 ~I~aic~g~~~lLa~a 196 (472)
+|.+||-|-. +|+.+
T Consensus 73 PvlGIC~G~Q-lla~~ 87 (184)
T cd01743 73 PILGVCLGHQ-AIAEA 87 (184)
T ss_pred CEEEECHhHH-HHHHH
Confidence 9999999755 67765
No 197
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.71 E-value=0.078 Score=49.32 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc---CChHHHHHHHHH-
Q 012037 100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR---DCEILKKITSKQ- 175 (472)
Q Consensus 100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~---~~~~~~~~l~~~- 175 (472)
+..+++.|++.|+++.++.... +.. .+|.||+||+. ...... ..-.+.+.|++.
T Consensus 12 ~~~v~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~lilPG~g-~~~~~~~~l~~~~~~~~l~~~~ 69 (201)
T PRK13152 12 LNSVAKAFEKIGAINFIAKNPK-------------------DLQ--KADKLLLPGVG-SFKEAMKNLKELGFIEALKEQV 69 (201)
T ss_pred HHHHHHHHHHCCCeEEEECCHH-------------------HHc--CCCEEEECCCC-chHHHHHHHHHcCcHHHHHHHH
Confidence 3455788888888877654221 122 58999999983 322111 111234455554
Q ss_pred HhcCCeEEEEchhhHHhhhcC
Q 012037 176 AEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 176 ~~~~k~I~aic~g~~~lLa~a 196 (472)
++++++|.+||.|.+ +|+.+
T Consensus 70 ~~~~~pvlGiC~G~Q-~l~~~ 89 (201)
T PRK13152 70 LVQKKPILGICLGMQ-LFLER 89 (201)
T ss_pred HhCCCcEEEECHhHH-HHhhc
Confidence 588999999999755 78876
No 198
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=94.53 E-value=0.1 Score=46.04 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=57.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SV 160 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~ 160 (472)
..+.-|+||...|....-+..+..-+.+..|.+.+ .+.+-.+-.++. +.|++|||||... +.
T Consensus 9 Ktn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~---------------~~~tVKT~~D~a--q~DaLIIPGGEST~ms 71 (226)
T KOG3210|consen 9 KTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKL---------------SVMTVKTKNDLA--QCDALIIPGGESTAMS 71 (226)
T ss_pred CcceEEeeeehhhHHHHHHHHHHHhhccCcceEEE---------------EEEeecCHHHHh--hCCEEEecCCchhHHH
Confidence 34567999999886554443333333333333321 122222334444 7999999999532 22
Q ss_pred cccCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhcCCCCCC
Q 012037 161 RLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPWGLLRR 201 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~aGlL~g 201 (472)
.+.+-..+.+-|.++..++ |++.+.|+| . ++-.+.+-++
T Consensus 72 lia~~tgL~d~L~~fVhn~~k~~WGTCAG-m-I~LS~ql~ne 111 (226)
T KOG3210|consen 72 LIAERTGLYDDLYAFVHNPSKVTWGTCAG-M-IYLSQQLSNE 111 (226)
T ss_pred HHHhhhhhHHHHHHHhcCCCccceeechh-h-hhhhhhhcCC
Confidence 2333345777777777777 999999996 4 3333334333
No 199
>PLN02327 CTP synthase
Probab=94.52 E-value=0.22 Score=52.85 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=87.6
Q ss_pred eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc--cC-Cc-chhhhcccccccccCCCCEEEEEeC-CCCCHH
Q 012037 227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH--NA-DN-SLKKEEFNEVEWFFDRMPRVLIPIA-NGSEEI 301 (472)
Q Consensus 227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~--~~-~~-~~~~~~~n~~~~~~~~~~~V~il~~-~g~~~~ 301 (472)
-.++|.+-...+..+.=+.+- .+.+.+.+.+.|-++ .. .. .+|.+-.+... +.....+|+++-= -...+
T Consensus 238 ~~~Vi~~~d~~~iY~vPl~l~----~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~-~~~~~v~IalVGKY~~l~D- 311 (557)
T PLN02327 238 AENILNLHDVSNIWHVPLLLR----DQKAHEAILKVLNLLSVAREPDLEEWTARAESCD-NLTEPVRIAMVGKYTGLSD- 311 (557)
T ss_pred HHHEEEcCCCchHhhhhHHHH----HCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHh-CCCCceEEEEEecccCCcH-
Confidence 356888777666555554444 455666777777776 21 11 12222222111 2233467888753 23333
Q ss_pred HHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEee---cCCccccCCCcccEEEEcCCCcchhcccccHHHHHH
Q 012037 302 EIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIA---DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKL 374 (472)
Q Consensus 302 e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~---d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~ 374 (472)
.+..+.+.|+.|+ .++++.-.+.. .+... +..-.+ +..++.+ .++|.|++|||.+. . .....+..
T Consensus 312 AY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~~-~~~~~~~~y~~~~~~L--~~~DGIvvpGGfG~-~---~~~G~i~a 383 (557)
T PLN02327 312 SYLSVLKALLHASVACSRKLVIDWVAAS-DLEDE-TAKETPDAYAAAWKLL--KGADGILVPGGFGD-R---GVEGKILA 383 (557)
T ss_pred hHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCCc-ccccccchhhhhHHhh--ccCCEEEeCCCCCC-c---ccccHHHH
Confidence 3677888888875 44554444432 22111 110000 1112233 78999999999732 2 22344667
Q ss_pred HHHHHHcCCeEEEEchhHHHHH
Q 012037 375 LKEQKVAGRIYGAVCSSPIVLH 396 (472)
Q Consensus 375 L~~~~~~g~~v~aic~G~~lLA 396 (472)
++.+.++++++.+||-|..+++
T Consensus 384 i~~are~~iP~LGIClGmQl~v 405 (557)
T PLN02327 384 AKYARENKVPYLGICLGMQIAV 405 (557)
T ss_pred HHHHHHcCCCEEEEcHHHHHHH
Confidence 7778889999999999987764
No 200
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=94.40 E-value=0.13 Score=53.43 Aligned_cols=89 Identities=21% Similarity=0.137 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc--ccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~--~~l 162 (472)
.||+|---.-|+.. +-.-++.|+++ +++..+|+-.. +..+ ++|+|++|||.... ..+
T Consensus 234 ~~iavA~D~AF~Fy-Y~enl~~L~~~-aelv~fSPl~~-----------------~~lp--~~D~l~lpGG~~e~~~~~L 292 (433)
T PRK13896 234 PTVAVARDAAFCFR-YPATIERLRER-ADVVTFSPVAG-----------------DPLP--DCDGVYLPGGYPELHADAL 292 (433)
T ss_pred CeEEEEEcCcccee-CHHHHHHHHhc-CcEEEEcCCCC-----------------CCCC--CCCEEEeCCCchhhHHHHH
Confidence 58998875544432 44557888888 89988887532 1223 58999999997322 224
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+... +-|+++.++|++|.++|.| ..+|.+.
T Consensus 293 ~~n~~~-~~i~~~~~~G~pi~aeCGG-~q~L~~~ 324 (433)
T PRK13896 293 ADSPAL-DELADRAADGLPVLGECGG-LMALAES 324 (433)
T ss_pred HhCCcH-HHHHHHHHCCCcEEEEehH-HHHhhcc
Confidence 444444 7899999999999999996 5466663
No 201
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=94.40 E-value=0.091 Score=48.64 Aligned_cols=87 Identities=10% Similarity=0.112 Sum_probs=56.2
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|..+... ..+.+.|++.|+++.++..+.. .. ++.....||+||+-||...+.. ....
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~-~~--------------~~~~~~~~d~iIlsgGP~~p~~---~~~~ 62 (195)
T PRK07649 2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV-TI--------------SDIENMKPDFLMISPGPCSPNE---AGIS 62 (195)
T ss_pred EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC-CH--------------HHHhhCCCCEEEECCCCCChHh---CCCc
Confidence 45556555444 3588999999999988876532 11 1111125899999998544432 2335
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...++. ++.++++.+||-|.+ +|+.+
T Consensus 63 ~~~i~~-~~~~~PvLGIClG~Q-lla~~ 88 (195)
T PRK07649 63 MEVIRY-FAGKIPIFGVCLGHQ-SIAQV 88 (195)
T ss_pred hHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 566664 467899999999766 67764
No 202
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=94.32 E-value=0.28 Score=54.33 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
..+||+|+=+.+ .-...+.+.|++.|+++.++....... .++ ...||.|||-||...+.
T Consensus 515 ~~~~IlVID~gd---s~~~~l~~~L~~~G~~v~vv~~~~~~~-------------~~~---~~~~DgLILsgGPGsp~-- 573 (717)
T TIGR01815 515 EGRRILLVDHED---SFVHTLANYLRQTGASVTTLRHSHAEA-------------AFD---ERRPDLVVLSPGPGRPA-- 573 (717)
T ss_pred CCCEEEEEECCC---hhHHHHHHHHHHCCCeEEEEECCCChh-------------hhh---hcCCCEEEEcCCCCCch--
Confidence 467888885442 335678999999999998876542100 011 12599999977633332
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+....++|++.++++++|.+||-|.+ +|+.+
T Consensus 574 --d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 574 --DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred --hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 33567899999999999999999766 67765
No 203
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=94.31 E-value=0.35 Score=51.09 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=86.3
Q ss_pred eCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccC-Cc-chhhhcccccccccCCCCEEEEEeCCCCCHHHHH
Q 012037 227 SGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNA-DN-SLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIV 304 (472)
Q Consensus 227 Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~-~~-~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~ 304 (472)
-.+++.+-...+..+.=+.+- .+.+.+.+.+.|-++.. .. .+|.+-.+... ......+|+++-=---..-.+.
T Consensus 232 ~~~vi~~~d~~~iY~vPl~l~----~q~~~~~i~~~l~l~~~~~~~~~W~~~~~~~~-~~~~~v~IalVGKY~~~~daY~ 306 (525)
T TIGR00337 232 EEAVINAHDVSSIYEVPLLLL----KQGLDDYLCRRLNLNCDEADLSEWEELVEKFI-NPKHEVTIGIVGKYVELKDSYL 306 (525)
T ss_pred HHHEEEcCCCccHhhhhHHHH----HCChHHHHHHHhCCCCCCCcHHHHHHHHHHhh-CCCCCcEEEEEeCCcCCHHHHH
Confidence 457888877776665555444 44566777777777632 12 12222111111 2233578888754322223457
Q ss_pred HHHHHHHhCCC----eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHH
Q 012037 305 TIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKV 380 (472)
Q Consensus 305 ~~~d~l~~a~~----~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~ 380 (472)
.+.+.|..++. ++.+...+.. .+... ..+.+ .++|.|++|||.+. . ..+..+..++.+.+
T Consensus 307 SI~eAL~~ag~~~~~~V~~~~i~se-~i~~~---------~~~~L--~~~dGIiLpGG~G~-~---~~~g~i~ai~~a~e 370 (525)
T TIGR00337 307 SVIEALKHAGAKLDTKVNIKWIDSE-DLEEE---------GAEFL--KGVDGILVPGGFGE-R---GVEGKILAIKYARE 370 (525)
T ss_pred HHHHHHHhCccccCCEEEEEEecHH-Hhhhh---------hhhhh--cCCCEEEeCCCCCC-h---hhcChHHHHHHHHH
Confidence 88999999885 3333332221 11110 00112 56899999999742 2 23445667787788
Q ss_pred cCCeEEEEchhHHHHH
Q 012037 381 AGRIYGAVCSSPIVLH 396 (472)
Q Consensus 381 ~g~~v~aic~G~~lLA 396 (472)
++.++.+||-|-.+++
T Consensus 371 ~~iP~LGIClG~Qll~ 386 (525)
T TIGR00337 371 NNIPFLGICLGMQLAV 386 (525)
T ss_pred cCCCEEEEcHHHHHHH
Confidence 9999999999997664
No 204
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=94.25 E-value=0.15 Score=48.59 Aligned_cols=96 Identities=15% Similarity=0.025 Sum_probs=62.1
Q ss_pred CCcEEEEEeCCCC--cHHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-
Q 012037 83 PPKKVLVPVGFGT--EEME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG- 158 (472)
Q Consensus 83 ~~~kV~ill~~g~--~~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~- 158 (472)
..+||+++-+-.. +..+ +....++|++.|+++..+-... ...+.+. ..|+|+|+||..-
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------------d~~~~l~--~ad~I~v~GGnt~~ 92 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------------DPVAAIE--NAEAIFVGGGNTFQ 92 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------------hhHHHHh--cCCEEEECCccHHH
Confidence 4678998876542 2233 4457888889999876553221 0111222 6899999999411
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.........+.+.|++.+++|+++++.|+| +.+++..
T Consensus 93 l~~~l~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~~ 129 (233)
T PRK05282 93 LLKQLYERGLLAPIREAVKNGTPYIGWSAG-ANVAGPT 129 (233)
T ss_pred HHHHHHHCCcHHHHHHHHHCCCEEEEECHH-HHhhhcc
Confidence 111233456778899999999999999996 5455543
No 205
>PRK13566 anthranilate synthase; Provisional
Probab=94.22 E-value=0.36 Score=53.50 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
...+||+|+=+.+ .-...+.+.|++.|+++.++..+.... .+.. .++|.|||-||...+
T Consensus 524 ~~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~~~-------------~~~~---~~~DgVVLsgGpgsp-- 582 (720)
T PRK13566 524 GEGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFAEE-------------MLDR---VNPDLVVLSPGPGRP-- 582 (720)
T ss_pred CCCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCChh-------------Hhhh---cCCCEEEECCCCCCh--
Confidence 3457887776553 335678899999999999988763200 1111 259999997763332
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+..+.+++++..+++++|.+||-|.. +|+.+
T Consensus 583 --~d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 583 --SDFDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred --hhCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 234578999999999999999999866 56665
No 206
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.18 E-value=0.1 Score=48.10 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=53.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc--c
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL--R 163 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l--~ 163 (472)
|+|+=+..-+. .....+|++.|+++.++... ++.. ++|.||+||+. ... .+ .
T Consensus 2 i~iidyg~gN~---~s~~~al~~~g~~~~~v~~~-------------------~~l~--~~D~lIlPG~g-~~~~~~~~L 56 (192)
T PRK13142 2 IVIVDYGLGNI---SNVKRAIEHLGYEVVVSNTS-------------------KIID--QAETIILPGVG-HFKDAMSEI 56 (192)
T ss_pred EEEEEcCCccH---HHHHHHHHHcCCCEEEEeCH-------------------HHhc--cCCEEEECCCC-CHHHHHHHH
Confidence 67776665444 45578888888887776422 1222 58999999982 211 11 1
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
....+.+.|++ +.++++.+||.|-. +|++..
T Consensus 57 ~~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~~ 87 (192)
T PRK13142 57 KRLNLNAILAK--NTDKKMIGICLGMQ-LMYEHS 87 (192)
T ss_pred HHCCcHHHHHH--hCCCeEEEECHHHH-HHhhhc
Confidence 11235677776 57899999999754 677653
No 207
>PRK00758 GMP synthase subunit A; Validated
Probab=94.16 E-value=0.12 Score=47.28 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcc-cEEEEcCCccccccccCChHHHHHHHHHHhcCCe
Q 012037 103 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVF-DLIALPGGMPGSVRLRDCEILKKITSKQAEEKRL 181 (472)
Q Consensus 103 ~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~-D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~ 181 (472)
+.+.|++.|+++.++..+.. .++.. .+ |+|+++||. ... ....+.+|++ +.+++
T Consensus 15 i~~~l~~~g~~~~~~~~~~~----------------~~~l~--~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~P 69 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTTP----------------VEEIK--AFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVP 69 (184)
T ss_pred HHHHHHHcCCcEEEEECCCC----------------HHHHh--hcCCEEEECCCC-Chh---hccccHHHHH---hCCCC
Confidence 57788888988877664421 11222 45 999999994 322 2234566776 45899
Q ss_pred EEEEchhhHHhhhcC
Q 012037 182 YGAICAAPAVTLLPW 196 (472)
Q Consensus 182 I~aic~g~~~lLa~a 196 (472)
|.+||-|-+ +|+.+
T Consensus 70 ilGIC~G~Q-~L~~a 83 (184)
T PRK00758 70 ILGICLGHQ-LIAKA 83 (184)
T ss_pred EEEEeHHHH-HHHHh
Confidence 999999755 67766
No 208
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=94.07 E-value=0.072 Score=49.03 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc--------------ccCCh
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR--------------LRDCE 166 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~--------------l~~~~ 166 (472)
......|+..|+.+.++..... . ..+.. ....+|.|++|||...... ...+.
T Consensus 22 ~~~~~~l~~~G~~~~iv~~~~~-~------------~~~~~-~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~ 87 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDD-E------------EDLEQ-YLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDA 87 (189)
T ss_pred HHHHHHHHHCCCEEEEeCCCCC-h------------HHHHH-HHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHH
Confidence 3567888888988877765431 1 00111 0126999999999421111 11123
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...++++++.+.+++|.+||.|.. +|+.+
T Consensus 88 ~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~ 116 (189)
T cd01745 88 FELALLRAALERGKPILGICRGMQ-LLNVA 116 (189)
T ss_pred HHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence 457899999999999999999866 45543
No 209
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=94.07 E-value=0.12 Score=47.98 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=51.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cc
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QK 367 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~ 367 (472)
|+|+=|-.-+.. .+.+.|++.++++.++... +++ .++|.||+||+....... .+
T Consensus 2 i~iid~g~~n~~---~v~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~lilPG~g~~~~~~~~l~ 57 (201)
T PRK13152 2 IALIDYKAGNLN---SVAKAFEKIGAINFIAKNP-------------------KDL--QKADKLLLPGVGSFKEAMKNLK 57 (201)
T ss_pred EEEEECCCCcHH---HHHHHHHHCCCeEEEECCH-------------------HHH--cCCCEEEECCCCchHHHHHHHH
Confidence 445444433433 4456677777777654321 123 458999999975211111 11
Q ss_pred cHHHHHHHHHH-HHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQ-KVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~-~~~g~~v~aic~G~~lLA~a 398 (472)
...+.+.|+++ .+++++|.+||.|..+|+.+
T Consensus 58 ~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 58 ELGFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred HcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 11234555554 57899999999999999987
No 210
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=94.03 E-value=0.11 Score=54.76 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=30.2
Q ss_pred cccEEEEcCCccccc--cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 146 VFDLIALPGGMPGSV--RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 146 ~~D~vivpGG~~~~~--~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
++|+||+|||. ... .+ ...+.++|+++ |++|.+||.|-+ +|++.
T Consensus 36 ~~D~lILPGG~-~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~Q-mLg~~ 81 (476)
T PRK06278 36 DLDGLIIPGGS-LVESGSL--TDELKKEILNF---DGYIIGICSGFQ-ILSEK 81 (476)
T ss_pred cCCEEEECCCc-hhhcchH--HHHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence 69999999983 111 11 23455556555 999999999744 77766
No 211
>PRK06186 hypothetical protein; Validated
Probab=94.02 E-value=0.3 Score=46.20 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=57.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
+|+++-=---..-.+..+.+.|+.++ .++++.-.+.. .+... +.+ .++|.|+||||.+ .
T Consensus 3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~~-----------~~l--~~~dgilvpgGfg-~-- 65 (229)
T PRK06186 3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITDP-----------EDL--AGFDGIWCVPGSP-Y-- 65 (229)
T ss_pred EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCCh-----------hhH--hhCCeeEeCCCCC-c--
Confidence 45554322112234567788888775 55555544443 11111 122 6789999999974 2
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV 394 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~l 394 (472)
+.-+.-+..++...+++.++.+||-|..+
T Consensus 66 -rg~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 66 -RNDDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred -ccHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 34567788899999999999999999874
No 212
>PLN02335 anthranilate synthase
Probab=93.94 E-value=0.21 Score=47.23 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=56.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.+||+|+ |..+.. ...+.+.|++.|++++++..+.. + +++.....||+|||-||...+.
T Consensus 18 ~~~ilvi--D~~dsf-t~~i~~~L~~~g~~~~v~~~~~~-~--------------~~~~~~~~~d~iVisgGPg~p~--- 76 (222)
T PLN02335 18 NGPIIVI--DNYDSF-TYNLCQYMGELGCHFEVYRNDEL-T--------------VEELKRKNPRGVLISPGPGTPQ--- 76 (222)
T ss_pred cCcEEEE--ECCCCH-HHHHHHHHHHCCCcEEEEECCCC-C--------------HHHHHhcCCCEEEEcCCCCChh---
Confidence 4577777 433333 34678899999999999965421 1 1111112589999999854443
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+.....+++++ ....++|.+||-|.+ +|+.+
T Consensus 77 d~~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~a 107 (222)
T PLN02335 77 DSGISLQTVLE-LGPLVPLFGVCMGLQ-CIGEA 107 (222)
T ss_pred hccchHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence 22234556654 456799999999866 56653
No 213
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=93.92 E-value=0.3 Score=52.27 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+||+|+ |..+-.. ..+++.|+..|+++.++..+- + .+..++++...++|.||+-||++.+.....
T Consensus 2 ~~iLiI--Dn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~ 66 (531)
T PRK09522 2 ADILLL--DNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAGC 66 (531)
T ss_pred CeEEEE--eCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCCC
Confidence 455555 3333333 457888899999998887542 1 112344443345789999999865543332
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+.+++ ..+.+.+|.+||-|-.+|+.+
T Consensus 67 ~~~i~~----~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 67 MPELLT----RLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred CHHHHH----HHhcCCCEEEEcHHHHHHHHh
Confidence 333332 234689999999999999876
No 214
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=93.91 E-value=0.45 Score=45.41 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=36.5
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 396 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA 396 (472)
.++|.|+++||.. .. .....+.+++...+.++++.+||.|..+|+
T Consensus 54 ~~~dgivl~GG~~-~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~l~ 98 (235)
T cd01746 54 KGADGILVPGGFG-IR---GVEGKILAIKYARENNIPFLGICLGMQLAV 98 (235)
T ss_pred ccCCEEEECCCCC-Cc---chhhHHHHHHHHHHCCceEEEEEhHHHHHH
Confidence 5799999999973 22 234667888988999999999999998774
No 215
>CHL00101 trpG anthranilate synthase component 2
Probab=93.89 E-value=0.15 Score=46.86 Aligned_cols=87 Identities=8% Similarity=0.003 Sum_probs=54.0
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|..+... ..+.+.|++.|+++.++..+.. + +.+.....+|+|||-||...+.+ + ..
T Consensus 2 iliid~~dsft-~~l~~~l~~~g~~~~v~~~~~~-~--------------~~~~~~~~~dgiiisgGpg~~~~---~-~~ 61 (190)
T CHL00101 2 ILIIDNYDSFT-YNLVQSLGELNSDVLVCRNDEI-D--------------LSKIKNLNIRHIIISPGPGHPRD---S-GI 61 (190)
T ss_pred EEEEECCCchH-HHHHHHHHhcCCCEEEEECCCC-C--------------HHHHhhCCCCEEEECCCCCChHH---C-cc
Confidence 44444443333 4578889999988887765531 1 11111125899999998543332 2 23
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...+.+.++.+++|.+||-|-+ +|+.+
T Consensus 62 ~~~i~~~~~~~~PiLGIClG~Q-lla~~ 88 (190)
T CHL00101 62 SLDVISSYAPYIPILGVCLGHQ-SIGYL 88 (190)
T ss_pred hHHHHHHhcCCCcEEEEchhHH-HHHHH
Confidence 3344456788999999999765 67764
No 216
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=93.82 E-value=0.1 Score=47.96 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcC
Q 012037 100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 179 (472)
Q Consensus 100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~ 179 (472)
...+...|++.|.+++++..+.. .. .+ .+ ....||+++|+||...... .+...+++++..+.+
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~-~~--------~~---~~--~~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~ 72 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSD-FE--------EP---LE--DLDDYDGIIISGGPGSPYD---IEGLIELIREARERK 72 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGG-HH--------HH---HH--HTTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCeEEEEECCCc-hh--------hh---hh--hhcCCCEEEECCcCCcccc---ccccccccccccccc
Confidence 35678899999999999886632 10 00 00 1237999999999544332 578889999999999
Q ss_pred CeEEEEchhhHHhhhcC
Q 012037 180 RLYGAICAAPAVTLLPW 196 (472)
Q Consensus 180 k~I~aic~g~~~lLa~a 196 (472)
++|.+||-|-. +|+.+
T Consensus 73 ~PilGIC~G~Q-~la~~ 88 (192)
T PF00117_consen 73 IPILGICLGHQ-ILAHA 88 (192)
T ss_dssp SEEEEETHHHH-HHHHH
T ss_pred eEEEEEeehhh-hhHHh
Confidence 99999999866 56654
No 217
>PRK05637 anthranilate synthase component II; Provisional
Probab=93.73 E-value=0.3 Score=45.68 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=55.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
|+||+++ |..+.. ...+++.|++.|+.++++..+. ++ ++.....||.|||-||..++.
T Consensus 1 ~~~il~i--D~~dsf-~~nl~~~l~~~g~~~~v~~~~~--~~--------------~~l~~~~~~~iIlsgGPg~~~--- 58 (208)
T PRK05637 1 MTHVVLI--DNHDSF-VYNLVDAFAVAGYKCTVFRNTV--PV--------------EEILAANPDLICLSPGPGHPR--- 58 (208)
T ss_pred CCEEEEE--ECCcCH-HHHHHHHHHHCCCcEEEEeCCC--CH--------------HHHHhcCCCEEEEeCCCCCHH---
Confidence 4565555 332222 2357889999999998887652 11 111122589999988743332
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+.....++++... .+++|.+||-|.+ +|+.+
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Q-lla~a 89 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQ-ALLEH 89 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHH-HHHHH
Confidence 2233456665443 5799999999766 67765
No 218
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.63 E-value=0.5 Score=43.07 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=59.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
++|+++ |.++... ..+++.|+..|.++.++-.+.- +..++...++|.|+|--|++.+. .
T Consensus 2 ~~IL~I--DNyDSFt-yNLv~yl~~lg~~v~V~rnd~~---------------~~~~~~~~~pd~iviSPGPG~P~---d 60 (191)
T COG0512 2 MMILLI--DNYDSFT-YNLVQYLRELGAEVTVVRNDDI---------------SLELIEALKPDAIVISPGPGTPK---D 60 (191)
T ss_pred ceEEEE--ECccchH-HHHHHHHHHcCCceEEEECCcc---------------CHHHHhhcCCCEEEEcCCCCChH---H
Confidence 344444 4444443 3678888888888877755521 22233335689999988875433 3
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....+.|+++ .+..+|.+||-|=..|+++
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~ 90 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEA 90 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHH
Confidence 34577888888 6678999999999888754
No 219
>PLN02347 GMP synthetase
Probab=93.46 E-value=0.52 Score=50.49 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=57.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
.+|+|+=|-.-. ...+...|++.|+.+.++..+. +++++...++|.||++||+.... ...
T Consensus 11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~----------------~~~~i~~~~~dgIILsGGP~sv~-~~~ 70 (536)
T PLN02347 11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTA----------------SLDRIASLNPRVVILSGGPHSVH-VEG 70 (536)
T ss_pred CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCC----------------CHHHHhcCCCCEEEECCCCCccc-ccC
Confidence 367776554333 2456778888888877765442 23444223689999999974322 112
Q ss_pred cHHHH-HHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILK-KLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~-~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+.+. .+++...+.+.+|.+||-|..+|+.+
T Consensus 71 ~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 71 APTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred CchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 22222 23333445789999999999999975
No 220
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=93.38 E-value=0.078 Score=49.69 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=55.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc---cccccc
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP---GSVRLR 163 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~---~~~~l~ 163 (472)
|+|+=|..- -+..+...|+..++++.++.... +.. .+|.||+||+.. ....+.
T Consensus 2 i~iidyg~g---Nl~s~~~al~~~~~~~~~~~~~~-------------------~l~--~~d~iIlPG~g~~~~~~~~l~ 57 (210)
T PRK14004 2 IAILDYGMG---NIHSCLKAVSLYTKDFVFTSDPE-------------------TIE--NSKALILPGDGHFDKAMENLN 57 (210)
T ss_pred EEEEECCCc---hHHHHHHHHHHcCCeEEEECCHH-------------------Hhc--cCCEEEECCCCchHHHHHHHH
Confidence 555544433 34566777777787776653221 222 689999999831 112222
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...+.++|+++.+.+++|.+||.|.. +|+++
T Consensus 58 -~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~ 88 (210)
T PRK14004 58 -STGLRSTIDKHVESGKPLFGICIGFQ-ILFES 88 (210)
T ss_pred -HcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence 23578899999999999999999755 67775
No 221
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=93.20 E-value=0.43 Score=48.74 Aligned_cols=88 Identities=18% Similarity=0.082 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.+||+++=+ |+. ..++..|++.|+++.++..+.. .++....++|.|++.||...+.
T Consensus 192 ~~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~dgIilSgGPg~p~--- 247 (382)
T CHL00197 192 QLKIIVIDF-GVK----YNILRRLKSFGCSITVVPATSP----------------YQDILSYQPDGILLSNGPGDPS--- 247 (382)
T ss_pred CCEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCCC----------------HHHHhccCCCEEEEcCCCCChh---
Confidence 467777755 554 2478888999999988854321 1111122599999999843332
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.....++.+++..+.+++|.+||-|-. +|+.+
T Consensus 248 ~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a 279 (382)
T CHL00197 248 AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA 279 (382)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence 234567788888778899999999866 55544
No 222
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=92.94 E-value=1.8 Score=44.97 Aligned_cols=222 Identities=13% Similarity=0.106 Sum_probs=119.2
Q ss_pred ccEEEEc-CCccccccccCChHHHHHHHHHHh-c--CCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Ccccc
Q 012037 147 FDLIALP-GGMPGSVRLRDCEILKKITSKQAE-E--KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK 221 (472)
Q Consensus 147 ~D~vivp-GG~~~~~~l~~~~~~~~~l~~~~~-~--~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~ 221 (472)
+|++++= ||.-+. ...-.+++-+|++.. . ...+..-|+ ..-.++.+|=++.|- |=|.. ..|+. ....|
T Consensus 133 ~DvvivEIGGTVGD---IEslpFlEAiRQ~~~e~g~~n~~fiH~t-lvpyi~~~gE~KTKP-TQhSV--keLR~iGI~PD 205 (533)
T COG0504 133 ADVVIVEIGGTVGD---IESLPFLEAIRQLRLELGRENVLFIHVT-LVPYIAAAGELKTKP-TQHSV--KELRSIGIQPD 205 (533)
T ss_pred CCEEEEEeCCceec---ccccHHHHHHHHHHhhhCcccEEEEEEe-cceeecccCccCCCC-chHHH--HHHHhcCCCcc
Confidence 7888874 663221 133456677776542 2 234444455 355678888777654 22321 11221 00000
Q ss_pred ----------------C--cE--EEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc-cCCcc-hhhhcccc
Q 012037 222 ----------------S--NI--HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH-NADNS-LKKEEFNE 279 (472)
Q Consensus 222 ----------------~--~~--v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~-~~~~~-~~~~~~n~ 279 (472)
+ .+ |....+|++-...+..+.-+ .+..+.+.+.+.+.|-++ ...+. .|.+-.+.
T Consensus 206 iii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~~Dv~siY~vPl----~l~~qgl~~~i~~~l~l~~~~~dl~~W~~~v~~ 281 (533)
T COG0504 206 ILICRSERPLPEEERRKIALFCNVPEEAVISAPDVESIYEVPL----LLEKQGLDDYILERLNLNAPEPDLSEWKDLVDK 281 (533)
T ss_pred eEEEecCCCCCHHHHHHHHHhcCCCHHHeEecccHHHHHHhHH----HHHHcchHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence 0 01 12245666655444444333 445566677777788885 33222 24433333
Q ss_pred cccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEE
Q 012037 280 VEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL 355 (472)
Q Consensus 280 ~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~liv 355 (472)
+.. ..+..+|+++------.-.+..+.+.|..++ .++.+.-.+.. .+.. .....+.. .+|.++|
T Consensus 282 i~~-~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~------~~~~~~~~----~~dgIlV 349 (533)
T COG0504 282 IKN-PKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEE------ENAAELEK----LVDGILV 349 (533)
T ss_pred hcC-CCCceEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccc------cchhhhhh----cCCEEEe
Confidence 332 1222567776433222335678899999987 34444433332 1111 00001111 2899999
Q ss_pred cCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037 356 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 395 (472)
Q Consensus 356 pGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lL 395 (472)
|||.+ . +.-+.-+..++.+.+++.+..+||-|..+.
T Consensus 350 PGGFG-~---RG~eGkI~Ai~yAREn~iP~lGIClGmQ~a 385 (533)
T COG0504 350 PGGFG-Y---RGVEGKIAAIRYARENNIPFLGICLGMQLA 385 (533)
T ss_pred CCCCC-c---CchHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence 99984 2 345667788888889999999999998753
No 223
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=92.51 E-value=0.42 Score=49.16 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcC
Q 012037 303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAG 382 (472)
Q Consensus 303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g 382 (472)
-..++..|+..|+++.++..+. +.+++...++|.||+-||++.+. ..+...+.+++.. .+
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~----------------~~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~ 310 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTW----------------PASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GK 310 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCC----------------CHHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hC
Confidence 3678888888999998775443 22333224689999999975443 2355667777665 47
Q ss_pred CeEEEEchhHHHHHHc
Q 012037 383 RIYGAVCSSPIVLHKH 398 (472)
Q Consensus 383 ~~v~aic~G~~lLA~a 398 (472)
.+|.+||-|-.+|+.+
T Consensus 311 iPIlGICLGhQlLa~A 326 (415)
T PLN02771 311 VPVFGICMGHQLLGQA 326 (415)
T ss_pred CCEEEEcHHHHHHHHh
Confidence 8999999999999876
No 224
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=92.45 E-value=0.19 Score=48.54 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=38.7
Q ss_pred CcccEEEEcCCCcchh-------------cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 348 SVYDLIILPGGVAGAE-------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 348 ~~~D~livpGG~~~~~-------------~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+.+|.||++||..+.. ...++...+++|+.+.+++++|.+||-|..+|+.+
T Consensus 60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva 123 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123 (254)
T ss_pred HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 4589999999842221 11223456799999999999999999999999865
No 225
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=92.38 E-value=0.46 Score=48.19 Aligned_cols=86 Identities=23% Similarity=0.164 Sum_probs=57.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
+||+++=+ |+. ...+..|++.|+++.++..+. . +++.....+|.|||.||...+. .
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~--~--------------~~~i~~~~pDGIiLSgGPgdp~---~ 229 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT--D--------------AEEIKKYNPDGIFLSNGPGDPA---A 229 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC--C--------------HHHHHhhCCCEEEECCCCCCHH---H
Confidence 46776643 544 357888999999998775431 1 1122112469999999943332 3
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+...++++++..+ +++|.+||-|.+ +|+.+
T Consensus 230 ~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a 259 (358)
T TIGR01368 230 VEPAIETIRKLLE-KIPIFGICLGHQ-LLALA 259 (358)
T ss_pred HHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence 4667888998887 899999999866 55553
No 226
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=91.87 E-value=0.6 Score=45.59 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=47.9
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh---cccccHHHHHHHHHHHHc
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE---RLQKSRILKKLLKEQKVA 381 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~---~~~~~~~l~~~L~~~~~~ 381 (472)
.-++.+..+|.+|..+-.+.. ...+++. .+.+|.|++|||..... .......++++..+..++
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~ 89 (273)
T cd01747 24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA 89 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence 456777888888765544321 1123331 15689999999853222 122223344444444455
Q ss_pred C--CeEEEEchhHHHHHH
Q 012037 382 G--RIYGAVCSSPIVLHK 397 (472)
Q Consensus 382 g--~~v~aic~G~~lLA~ 397 (472)
| .+|.++|-|..+|+.
T Consensus 90 g~~~Pv~GiClG~QlL~~ 107 (273)
T cd01747 90 GDYFPVWGTCLGFELLTY 107 (273)
T ss_pred CCCCcEEEEcHHHHHHHH
Confidence 5 799999999998876
No 227
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=91.87 E-value=1.8 Score=40.67 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCCEEEEEeCCCCCHHHH-HHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecCC-ccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANGSEEIEI-VTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKS-ISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~-~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~~-l~~~~~~~~D~livpGG~~~~ 362 (472)
...||+++-+.+...-+. -...+.|++.|+ +++++..... . -..+.. .+.+ .+.|+|++.||....
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--------~a~~~~~~~~l--~~ad~I~~~GG~~~~ 96 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--------AANDPEVVARL--RDADGIFFTGGDQLR 96 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--------HcCCHHHHHHH--HhCCEEEEeCCcHHH
Confidence 346888887776543333 335667777776 4555544321 1 000111 1223 678999999996311
Q ss_pred -hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 363 -ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 363 -~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
........+.+.|++..++|.++++..+|+.++...
T Consensus 97 ~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 97 ITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 112345578889999999999999999999998654
No 228
>PRK06186 hypothetical protein; Validated
Probab=91.82 E-value=1.2 Score=42.19 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=56.3
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 86 KVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 86 kV~ill~~g~~-~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
+|+++ ..-.+ ...+..+.+.|+-+ +..+++...+.. .+.. +. ....+|.|+||||++ .
T Consensus 3 ~IalV-GKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~-~l~~--------~~-----~l~~~dgilvpgGfg-~- 65 (229)
T PRK06186 3 RIALV-GDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTP-EITD--------PE-----DLAGFDGIWCVPGSP-Y- 65 (229)
T ss_pred EEEEE-ECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchh-hcCC--------hh-----hHhhCCeeEeCCCCC-c-
Confidence 56644 33222 35567788888876 456666555432 2211 11 133789999999963 2
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
+.-+--+..++.+.++++|+.+||-|-+
T Consensus 66 --rg~~Gki~ai~~Are~~iP~LGIClGmQ 93 (229)
T PRK06186 66 --RNDDGALTAIRFARENGIPFLGTCGGFQ 93 (229)
T ss_pred --ccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence 3446677789999999999999999755
No 229
>PRK05380 pyrG CTP synthetase; Validated
Probab=91.79 E-value=0.88 Score=48.22 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=57.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCC----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAG----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
..+||++=----....+..+.++|+.++ ..+++...+.- .++.. ...+.. ..+|.|++|||++ .
T Consensus 288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse-~l~~~--------~~~~~L--~~~DGIIlpGGfG-~ 355 (533)
T PRK05380 288 EVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSE-DLEEE--------NVAELL--KGVDGILVPGGFG-E 355 (533)
T ss_pred ceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChh-hccCc--------chhhHh--hcCCEEEecCCCC-c
Confidence 4567766321112345777888888774 45565555532 22211 011122 3699999999953 2
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
. ..+..+++++.+.++++++.+||-|-+
T Consensus 356 ~---~~~g~i~~i~~a~e~~iPiLGIClGmQ 383 (533)
T PRK05380 356 R---GIEGKILAIRYARENNIPFLGICLGMQ 383 (533)
T ss_pred c---ccccHHHHHHHHHHCCCcEEEEchHHH
Confidence 2 234567889999999999999999765
No 230
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=91.64 E-value=0.64 Score=49.97 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=56.6
Q ss_pred EeCCCCCHHHHHHHHHHHHhCCCe-EEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHH
Q 012037 293 PIANGSEEIEIVTIVDILRRAKVD-VVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRIL 371 (472)
Q Consensus 293 l~~~g~~~~e~~~~~d~l~~a~~~-v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l 371 (472)
++-|..+.... .+++.|++.+.+ +.++-++.- .++++...++|.||+.||+..+.+. ...
T Consensus 3 l~idn~dsft~-nl~~~l~~~g~~~v~~~~~~~~---------------~~~~~~~~~~d~vIlsgGP~~p~~~---~~~ 63 (534)
T PRK14607 3 ILIDNYDSFTY-NIYQYIGELGPEEIEVVRNDEI---------------TIEEIEALNPSHIVISPGPGRPEEA---GIS 63 (534)
T ss_pred EEEECchhHHH-HHHHHHHHcCCCeEEEECCCCC---------------CHHHHHhcCCCEEEECCCCCChhhC---Ccc
Confidence 34454444444 478888888875 665544431 2334333468999999998654433 234
Q ss_pred HHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 372 KKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 372 ~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.++++.+ ..+.+|.+||-|-.+|+.+
T Consensus 64 ~~li~~~-~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 64 VEVIRHF-SGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred HHHHHHh-hcCCCEEEEcHHHHHHHHH
Confidence 5667664 5789999999999999876
No 231
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=91.59 E-value=0.43 Score=48.30 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.++|+++=+ |+ -..+++.|++.|+.+.++..+.. .++.....+|.|+++||..++.
T Consensus 167 ~~~V~viD~-G~----k~ni~~~L~~~G~~v~vvp~~~~----------------~~~i~~~~~DGIiLsgGPgdp~--- 222 (354)
T PRK12838 167 GKHVALIDF-GY----KKSILRSLSKRGCKVTVLPYDTS----------------LEEIKNLNPDGIVLSNGPGDPK--- 222 (354)
T ss_pred CCEEEEECC-CH----HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEEcCCCCChH---
Confidence 356666533 43 35677888888999988865421 0111112599999999943332
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+.....+++++.+++ ++|.+||-|-+ +|+.+
T Consensus 223 ~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a 253 (354)
T PRK12838 223 ELQPYLPEIKKLISS-YPILGICLGHQ-LIALA 253 (354)
T ss_pred HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence 345677888888877 99999999766 56653
No 232
>PRK00074 guaA GMP synthase; Reviewed
Probab=90.60 E-value=0.66 Score=49.56 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=56.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
+.+|+|+=|-.-. .-.+...+++.|...+++..+.. .+++...++|.||++||...... .
T Consensus 3 ~~~i~vlD~Gsq~---~~li~r~lrelg~~~~v~p~~~~----------------~~~l~~~~~dgIIlsGGp~sv~~-~ 62 (511)
T PRK00074 3 HDKILILDFGSQY---TQLIARRVRELGVYSEIVPYDIS----------------AEEIRAFNPKGIILSGGPASVYE-E 62 (511)
T ss_pred CCEEEEEECCCCc---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhccCCCEEEECCCCccccc-C
Confidence 4568887663322 23467788888988877754331 23332235699999999743222 1
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+.+ .+...+.+.+|.+||-|..+|+.+
T Consensus 63 ~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 63 GAPRA---DPEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred CCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence 12222 234456799999999999999874
No 233
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=90.34 E-value=0.42 Score=45.61 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=34.1
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHh
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT 192 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~l 192 (472)
.+|.|+++||. +.. .......++++.++.++++.+||.|-+.+
T Consensus 55 ~~dgivl~GG~-~~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~l 97 (235)
T cd01746 55 GADGILVPGGF-GIR---GVEGKILAIKYARENNIPFLGICLGMQLA 97 (235)
T ss_pred cCCEEEECCCC-CCc---chhhHHHHHHHHHHCCceEEEEEhHHHHH
Confidence 69999999994 332 23466788999999999999999986643
No 234
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=90.29 E-value=0.18 Score=44.74 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=53.5
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-hcccccHHHHHHHHHHHHcCC
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-ERLQKSRILKKLLKEQKVAGR 383 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~~~~~~~~l~~~L~~~~~~g~ 383 (472)
...+.|++.|++++.+..... . .+...+.+ .+.|+|++.||.... ....++..+.+.|++..++|+
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~-~----------~~~~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~ 70 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDR-N----------DADILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGG 70 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSC-G----------HHHHHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCEEEEEeccCC-C----------hHHHHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCC
Confidence 467888999988777665542 0 01122333 578999999996311 112345568899999999999
Q ss_pred eEEEEchhHHHHHHcC
Q 012037 384 IYGAVCSSPIVLHKHG 399 (472)
Q Consensus 384 ~v~aic~G~~lLA~aG 399 (472)
+|++..+|+.++...+
T Consensus 71 vi~G~SAGA~i~~~~~ 86 (154)
T PF03575_consen 71 VIIGTSAGAMILGPSI 86 (154)
T ss_dssp EEEEETHHHHCTSSBS
T ss_pred EEEEEChHHhhccCce
Confidence 9999999998865443
No 235
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=89.80 E-value=1.7 Score=48.48 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=33.0
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHc----CCeEEEEchhHHHHHHc
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA----GRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~----g~~v~aic~G~~lLA~a 398 (472)
..||.|||.||++.+. +..-..++++..+. +.+|.+||-|..+|+.+
T Consensus 52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 5799999999875432 22234445544443 58999999999999876
No 236
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=89.74 E-value=0.27 Score=51.96 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=37.2
Q ss_pred cccEEEEcCCcccccc--ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 146 VFDLIALPGGMPGSVR--LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~--l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
++|+|++|||...... +..+..+.+.|+++.+.|++|.++|.| ..+|.+.
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG-~q~Lg~~ 335 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGG-YQMLGKE 335 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHH-HHHhhhh
Confidence 6899999999632222 223445788899999999999999996 5567664
No 237
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=89.67 E-value=0.52 Score=45.56 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=35.6
Q ss_pred cccEEEEcCCccccc--------c-----ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 146 VFDLIALPGGMPGSV--------R-----LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 146 ~~D~vivpGG~~~~~--------~-----l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+|.|+++||..+.. . ...|...+++++.+++++++|.+||-|-+ +|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 599999999832221 0 01123557899999999999999999766 56554
No 238
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=89.22 E-value=2.1 Score=39.92 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCCEEEEEeCCCCCHHH-HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecC-CccccCCCcccEEEEcCCCcch-
Q 012037 286 RMPRVLIPIANGSEEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADK-SISDAAESVYDLIILPGGVAGA- 362 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e-~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~-~l~~~~~~~~D~livpGG~~~~- 362 (472)
...||+++-......-+ .-...+.|++.|.++..+-.-.. ..+. ..+.+ .+.|+|+++||....
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-----------~~~~~~~~~l--~~ad~I~~~GG~~~~~ 94 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-----------ANDPDVVARL--LEADGIFVGGGNQLRL 94 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-----------CCCHHHHHHH--hhCCEEEEcCCcHHHH
Confidence 34678888776544333 34566788888876664432210 0111 12223 678999999996311
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+...+.+.|++..++|.++++.|+|+.++...
T Consensus 95 ~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 95 LSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 011222335555666666999999999999999984
No 239
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.09 E-value=1.4 Score=40.14 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=56.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|+++-.. ..+++.|++.|+++.++-.+.- . + ......++|+|+|--|. +... +....
T Consensus 4 IL~IDNyDSFt-yNLv~yl~~lg~~v~V~rnd~~-~--------~------~~~~~~~pd~iviSPGP-G~P~--d~G~~ 64 (191)
T COG0512 4 ILLIDNYDSFT-YNLVQYLRELGAEVTVVRNDDI-S--------L------ELIEALKPDAIVISPGP-GTPK--DAGIS 64 (191)
T ss_pred EEEEECccchH-HHHHHHHHHcCCceEEEECCcc-C--------H------HHHhhcCCCEEEEcCCC-CChH--HcchH
Confidence 34456655544 4688999999988887776521 1 1 12222358999997773 3322 44667
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
.+.|+++ ...++|.+||-|-+ .+++
T Consensus 65 ~~~i~~~-~~~~PiLGVCLGHQ-ai~~ 89 (191)
T COG0512 65 LELIRRF-AGRIPILGVCLGHQ-AIAE 89 (191)
T ss_pred HHHHHHh-cCCCCEEEECccHH-HHHH
Confidence 8888877 67789999999755 5554
No 240
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=88.80 E-value=2 Score=42.43 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCCCCcEEEEEeC-CCCcHHHHHHHHHHHHhC--CCEEEEEeeCCCcceeccCCceee-eCCCcCCCCCCcccEEEEcCC
Q 012037 80 SAVPPKKVLVPVG-FGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 80 ~~~~~~kV~ill~-~g~~~~e~~~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~-~d~~~~~~~~~~~D~vivpGG 155 (472)
..+++.||+||=. +.-...| ..+...|... .++++++....- .-....-..+. --.+++++....||++||.|.
T Consensus 31 qdirpl~i~ilNlMp~k~~TE-~q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 31 QDIRPLKILILNLMPKKIETE-TQFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred ccCCCccEEEEeCCCCCchHH-HHHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 3566789999843 4444444 3444444333 355666665532 11111111111 123555565568999999998
Q ss_pred ccccccccCC---hHHHHHHHHHHhcCCeEEEEchhhHHhh
Q 012037 156 MPGSVRLRDC---EILKKITSKQAEEKRLYGAICAAPAVTL 193 (472)
Q Consensus 156 ~~~~~~l~~~---~~~~~~l~~~~~~~k~I~aic~g~~~lL 193 (472)
........+. +++.++++...++++.+..||-|...++
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a 149 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAAL 149 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 4221111111 2344455545567999999999866444
No 241
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=88.72 E-value=3.5 Score=37.89 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=59.6
Q ss_pred CCEEEEEeCCCCCH---HHHHHHH----HHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 287 MPRVLIPIANGSEE---IEIVTIV----DILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 287 ~~~V~il~~~g~~~---~e~~~~~----d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
.+|++++..+-=.. -.+.+.. ..|...|-.|++.-.-.| .++- .+|. +.||.++|.|..
T Consensus 4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g---------efP~---~~Dl--~ky~gfvIsGS~ 69 (245)
T KOG3179|consen 4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG---------EFPQ---EEDL--EKYDGFVISGSK 69 (245)
T ss_pred ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC---------CCCC---hhhh--hhhceEEEeCCc
Confidence 46888887752111 1122333 344455666766655443 1211 2333 679999999976
Q ss_pred cchhccccc---HHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 360 AGAERLQKS---RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 360 ~~~~~~~~~---~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.++ +... .+|..++++.....+.|.+||-|=.++|++
T Consensus 70 ~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 70 HDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred ccc--cccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 432 2222 256777888877789999999999999876
No 242
>PLN02347 GMP synthetase
Probab=88.59 E-value=3.5 Score=44.27 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=53.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
.+|+|+=+.+-. ...+...|++.|+.+.++..+.. .++.....+|+||++||. +.....+
T Consensus 11 ~~IlIID~G~~~---t~~I~r~lrelgv~~~v~p~~~~----------------~~~i~~~~~dgIILsGGP-~sv~~~~ 70 (536)
T PLN02347 11 DVVLILDYGSQY---THLITRRVRELGVYSLLLSGTAS----------------LDRIASLNPRVVILSGGP-HSVHVEG 70 (536)
T ss_pred CEEEEEECCCcH---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhcCCCCEEEECCCC-CcccccC
Confidence 467766443322 23457888899988887764421 111111258999999994 3222222
Q ss_pred ChHHH-HHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 CEILK-KITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~~~~~-~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+.+. .+++...+.+++|.+||-|-+ +|+.+
T Consensus 71 ~p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a 102 (536)
T PLN02347 71 APTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK 102 (536)
T ss_pred CchhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence 23222 333333457899999999766 66664
No 243
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=88.14 E-value=1.5 Score=46.97 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=54.1
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEIL 168 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~ 168 (472)
||+-|..+... ..+.+.|++.|+++.++..+. + .+..+++....++|.||+-||...+.... .
T Consensus 4 iLiIDn~dsft-~nl~~~lr~~g~~v~V~~~~~--~----------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~----~ 66 (531)
T PRK09522 4 ILLLDNIDSFT-YNLADQLRSNGHNVVIYRNHI--P----------AQTLIERLATMSNPVLMLSPGPGVPSEAG----C 66 (531)
T ss_pred EEEEeCCChHH-HHHHHHHHHCCCCEEEEECCC--C----------CccCHHHHHhcCcCEEEEcCCCCChhhCC----C
Confidence 34445554444 457888899999998888552 1 01122222222588999988854443221 2
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..++.+.++.+++|.+||-|-+ +|+.+
T Consensus 67 ~~~i~~~~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 67 MPELLTRLRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred CHHHHHHHhcCCCEEEEcHHHH-HHHHh
Confidence 2333444567899999999866 56654
No 244
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=88.03 E-value=0.99 Score=29.86 Aligned_cols=27 Identities=33% Similarity=0.223 Sum_probs=19.7
Q ss_pred cEEEEEeCC-----------CCcHHHHHHHHHHHHhCC
Q 012037 85 KKVLVPVGF-----------GTEEMEAVIIVDVLRRAG 111 (472)
Q Consensus 85 ~kV~ill~~-----------g~~~~e~~~~~~~l~~ag 111 (472)
|||+|++.. |+...|++.|+++|+++|
T Consensus 1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence 467777643 889999999999999886
No 245
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=87.93 E-value=2.4 Score=40.85 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=64.4
Q ss_pred CCCEEEEEeCCCCCHHH-HHHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-
Q 012037 286 RMPRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA- 362 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e-~~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~- 362 (472)
...||+|+-.-.....+ .-...+.|+..|+ +++++..... . .-..+...+.+ ...|+|++.||....
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-------~a~~~~~~~~l--~~ad~I~~~GGnq~~l 96 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-------DASDENAIALL--SNATGIFFTGGDQLRI 96 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-------HccCHHHHHHH--hhCCEEEEeCCCHHHH
Confidence 34689988765444333 3456678888887 4666655321 0 00001112223 568999999996210
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 396 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA 396 (472)
....+...+.+.|++.+++|.++++..+|+.++.
T Consensus 97 ~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 97 TSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred HHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 1123456788899999999999999999998764
No 246
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=87.58 E-value=1.3 Score=41.00 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCEEEEEeCCCCCHH---HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccC--CCcccEEEEcCCCcc
Q 012037 287 MPRVLIPIANGSEEI---EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAA--ESVYDLIILPGGVAG 361 (472)
Q Consensus 287 ~~~V~il~~~g~~~~---e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~--~~~~D~livpGG~~~ 361 (472)
.++|+++-+-+.... =+....++|..-|..+.-++.... ..+++. ..+-|+|+|.||.
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~---------------~~~~Ie~~l~~~d~IyVgGGN-- 94 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP---------------PLAAIENKLMKADIIYVGGGN-- 94 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC---------------CHHHHHHhhhhccEEEECCch--
Confidence 568998877543322 345678888888888776655442 233331 1347999999985
Q ss_pred hhcc---cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 362 AERL---QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 362 ~~~~---~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
...+ .+...+.+.||+..++|.++++..+|+.+-...+
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 3332 3455688999999999999999999987655443
No 247
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=87.46 E-value=0.76 Score=42.60 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=37.6
Q ss_pred CcccEEEEcCCCcchhccc-cc-HHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 348 SVYDLIILPGGVAGAERLQ-KS-RILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~-~~-~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
+++|++++.||..-.+.+. ++ ..-.+-|+.+...|+++.+||.|..+|.+
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 5799999988863333332 22 23456789999999999999999999974
No 248
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=87.45 E-value=1.2 Score=41.34 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=35.2
Q ss_pred CcccEEEEcCCcccccccc-CC-hHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 145 QVFDLIALPGGMPGSVRLR-DC-EILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 145 ~~~D~vivpGG~~~~~~l~-~~-~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
..||++++-||..-...+. ++ ..-.+-|+++...++++.+||.|.. +|.+
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQ-LLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence 4799999988853222222 22 3455678899999999999999766 4554
No 249
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=86.87 E-value=1.4 Score=47.28 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=55.9
Q ss_pred EEeCCCCcHHHHHHHHHHHHhCCCE-EEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRAGAQ-VTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEI 167 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~ag~~-v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~ 167 (472)
||+-|..+... ..+.+.|++.|.+ +.++-++.- . +++.....+|+||+.||...+. ++..
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~~v~~~~~~~~-~--------------~~~~~~~~~d~vIlsgGP~~p~---~~~~ 62 (534)
T PRK14607 2 IILIDNYDSFT-YNIYQYIGELGPEEIEVVRNDEI-T--------------IEEIEALNPSHIVISPGPGRPE---EAGI 62 (534)
T ss_pred EEEEECchhHH-HHHHHHHHHcCCCeEEEECCCCC-C--------------HHHHHhcCCCEEEECCCCCChh---hCCc
Confidence 56666666554 3588899998885 666655421 1 1122222589999999954443 2334
Q ss_pred HHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 168 LKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 168 ~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..++++. ..++++|.+||-|-+ +|+.+
T Consensus 63 ~~~li~~-~~~~~PvLGIClG~Q-lLa~a 89 (534)
T PRK14607 63 SVEVIRH-FSGKVPILGVCLGHQ-AIGYA 89 (534)
T ss_pred cHHHHHH-hhcCCCEEEEcHHHH-HHHHH
Confidence 5677776 467899999999766 56653
No 250
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=86.68 E-value=1 Score=44.87 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=56.5
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
.++..|...|+++.++-. +.+.+++-...+|.||+--|++++. .-+..++.+++.....++
T Consensus 192 nIlr~L~~rg~~vtVVP~----------------~t~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iP 252 (368)
T COG0505 192 NILRELVKRGCRVTVVPA----------------DTSAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIP 252 (368)
T ss_pred HHHHHHHHCCCeEEEEcC----------------CCCHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCC
Confidence 344556666777776643 3356665556799999999986553 346788999999988889
Q ss_pred EEEEchhHHHHHHc
Q 012037 385 YGAVCSSPIVLHKH 398 (472)
Q Consensus 385 v~aic~G~~lLA~a 398 (472)
+.+||-|=.+||-|
T Consensus 253 ifGICLGHQllalA 266 (368)
T COG0505 253 IFGICLGHQLLALA 266 (368)
T ss_pred eEEEcHHHHHHHHh
Confidence 99999999999865
No 251
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=86.61 E-value=1.2 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred CcccEEEEcCCCcc--------------hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 348 SVYDLIILPGGVAG--------------AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 348 ~~~D~livpGG~~~--------------~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
+-.|.|+++||..- ..+..+|.--+.+||.+-+++++|.+||-|..+|.-
T Consensus 59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNV 122 (243)
T COG2071 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNV 122 (243)
T ss_pred hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence 45799999999420 111234556788999999999999999999998853
No 252
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=86.25 E-value=4.2 Score=43.21 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=55.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCC----EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
..+||++-----....+..+.+.|..+|+ .+.+...+.. .+.. . ..+.. ..+|.|++|||.+ .
T Consensus 289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se-~i~~--------~-~~~~L--~~~dGIiLpGG~G-~ 355 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSE-DLEE--------E-GAEFL--KGVDGILVPGGFG-E 355 (525)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHH-Hhhh--------h-hhhhh--cCCCEEEeCCCCC-C
Confidence 46788775322234457788999998876 2333322211 1110 0 00112 3689999999953 2
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHH
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAV 191 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~ 191 (472)
. ..+..++.++.+.+++.++.+||-|-+.
T Consensus 356 ~---~~~g~i~ai~~a~e~~iP~LGIClG~Ql 384 (525)
T TIGR00337 356 R---GVEGKILAIKYARENNIPFLGICLGMQL 384 (525)
T ss_pred h---hhcChHHHHHHHHHcCCCEEEEcHHHHH
Confidence 2 2344556778788899999999998653
No 253
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=86.14 E-value=1.6 Score=43.24 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCCEEEEEeC-CCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCC-C--cEEeecCCccccCCCcccEEEEcCCC
Q 012037 286 RMPRVLIPIA-NGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQ-G--VKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 286 ~~~~V~il~~-~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~-G--~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
++.||+|+-. |.-...|. .+...|.... ++++++....- ..+... . -++. ..++++...+||.+||.|..
T Consensus 34 rpl~i~ilNlMp~k~~TE~-q~~rll~~~~~qv~v~~~~~~~h-~~~~~~~~hl~~~y--~~~~~i~~~~~DG~IITGAp 109 (302)
T PRK05368 34 RPLKILILNLMPKKIETET-QFLRLLGNTPLQVDIHLLRIDSH-ESKNTPAEHLENFY--CTFEDIKDEKFDGLIITGAP 109 (302)
T ss_pred CCccEEEEeCCCCCchHHH-HHHHHhcCCCceEEEEEEecCCc-CCCCCCHHHHHHhc--cCHHHhccCCCCEEEEcCCC
Confidence 3578888854 44455554 4455554333 56777666542 111100 0 1111 25677766889999999986
Q ss_pred cchhcccc------cHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 360 AGAERLQK------SRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 360 ~~~~~~~~------~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
.....+.. -.++++|++ +.+..+.+||-|..+++.
T Consensus 110 ~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~ 150 (302)
T PRK05368 110 VEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQAALY 150 (302)
T ss_pred CCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHH
Confidence 43111111 234555655 458899999999988764
No 254
>PRK00074 guaA GMP synthase; Reviewed
Probab=85.70 E-value=3.5 Score=44.08 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=53.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
+.+|+||=+.. .- ...+...+++.|...+++..+.. . ..+.+. ++|+||++||...... .
T Consensus 3 ~~~i~vlD~Gs-q~--~~li~r~lrelg~~~~v~p~~~~--~-----------~~l~~~---~~dgIIlsGGp~sv~~-~ 62 (511)
T PRK00074 3 HDKILILDFGS-QY--TQLIARRVRELGVYSEIVPYDIS--A-----------EEIRAF---NPKGIILSGGPASVYE-E 62 (511)
T ss_pred CCEEEEEECCC-Cc--HHHHHHHHHHCCCeEEEEECCCC--H-----------HHHhcc---CCCEEEECCCCccccc-C
Confidence 45677776632 22 23457888999988888864421 0 111222 4799999999533322 1
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
..+.+ .+..++.+++|.+||-|-+ +|+.
T Consensus 63 ~~p~~---~~~i~~~~~PvLGIC~G~Q-lLa~ 90 (511)
T PRK00074 63 GAPRA---DPEIFELGVPVLGICYGMQ-LMAH 90 (511)
T ss_pred CCccc---cHHHHhCCCCEEEECHHHH-HHHH
Confidence 12222 3455678999999999766 5655
No 255
>PLN02327 CTP synthase
Probab=85.60 E-value=3.8 Score=43.69 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred CcEEEEEeCCCCc-HHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCC--CCCcccEEEEcCCc
Q 012037 84 PKKVLVPVGFGTE-EMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGGM 156 (472)
Q Consensus 84 ~~kV~ill~~g~~-~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~--~~~~~D~vivpGG~ 156 (472)
..+||++= .-.. ...+..+.++|+.+ +..+++...+.. .+... +..-.++ .++.. ....+|.|++|||.
T Consensus 297 ~v~IalVG-KY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se-~l~~~-~~~~~~~-~y~~~~~~L~~~DGIvvpGGf 372 (557)
T PLN02327 297 PVRIAMVG-KYTGLSDSYLSVLKALLHASVACSRKLVIDWVAAS-DLEDE-TAKETPD-AYAAAWKLLKGADGILVPGGF 372 (557)
T ss_pred ceEEEEEe-cccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchh-hcCCc-ccccccc-hhhhhHHhhccCCEEEeCCCC
Confidence 45777764 2222 34467788888866 455665555432 22211 1000010 11111 13479999999995
Q ss_pred cccccccCChHHHHHHHHHHhcCCeEEEEchhhHHh
Q 012037 157 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVT 192 (472)
Q Consensus 157 ~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~l 192 (472)
+. . .....+..++.+.++++++.+||-|-+++
T Consensus 373 G~-~---~~~G~i~ai~~are~~iP~LGIClGmQl~ 404 (557)
T PLN02327 373 GD-R---GVEGKILAAKYARENKVPYLGICLGMQIA 404 (557)
T ss_pred CC-c---ccccHHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 32 2 22344567777788999999999986543
No 256
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=85.33 E-value=4.8 Score=37.40 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+|.|.-..|++...+...++.|+.- -|.|..|... . +.-+. +.+ .--+|++|||..-...
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~---~--------Li~Ep-W~~----~T~lLV~pGGaDlpY~ 64 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ---F--------LIKEP-WEE----TTLLLVFPGGADLPYV 64 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh---e--------eecCc-chh----ceEEEEecCCCCchHH
Confidence 57888888899999999999888853 2455554322 1 22222 222 1347999999422222
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHH
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAV 191 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~ 191 (472)
..-++.--+-|....++|....+||+|+.|
T Consensus 65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 223455556777788999999999998654
No 257
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=4.9 Score=37.30 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=60.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCC---CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAK---VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~---~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|+|+|.--+|.....+-..+..|+.-- |.|..+ +++ .+..+ .+. +.--+|++|||..-.-.
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V--~~~---------~Li~E-pW~----~~T~lLV~pGGaDlpY~ 64 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRV--DAQ---------FLIKE-PWE----ETTLLLVFPGGADLPYV 64 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEe--eeh---------eeecC-cch----hceEEEEecCCCCchHH
Confidence 467777777999999999999988643 344433 332 22222 243 34578999999632221
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIV 394 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~l 394 (472)
-.-+...-+.|..+.++|....+||+|..+
T Consensus 65 ~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 65 QVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred HHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 122344456777888999999999999874
No 258
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=85.00 E-value=2.4 Score=43.74 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcC
Q 012037 100 AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEK 179 (472)
Q Consensus 100 ~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~ 179 (472)
-..++..|++.|+++.++..+. + .+++...++|.||+-||..++. ..+...+.+++.. .+
T Consensus 251 K~nIlr~L~~~G~~v~VvP~~~--~--------------~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~ 310 (415)
T PLN02771 251 KHNILRRLASYGCKITVVPSTW--P--------------ASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GK 310 (415)
T ss_pred HHHHHHHHHHcCCeEEEECCCC--C--------------HHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hC
Confidence 3667888899999998886542 1 1111122599999999843332 3356677777766 47
Q ss_pred CeEEEEchhhHHhhhcC
Q 012037 180 RLYGAICAAPAVTLLPW 196 (472)
Q Consensus 180 k~I~aic~g~~~lLa~a 196 (472)
++|.+||-|-+ +|+.+
T Consensus 311 iPIlGICLGhQ-lLa~A 326 (415)
T PLN02771 311 VPVFGICMGHQ-LLGQA 326 (415)
T ss_pred CCEEEEcHHHH-HHHHh
Confidence 89999999766 56654
No 259
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=84.86 E-value=2.9 Score=38.98 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=60.6
Q ss_pred CCcEEEEEeCCCCcHHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCC-CcCCCCCCcccEEEEcCCccc-c
Q 012037 83 PPKKVLVPVGFGTEEME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADT-SISNCSHQVFDLIALPGGMPG-S 159 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~-~~~~~~~~~~D~vivpGG~~~-~ 159 (472)
...||+++-.......+ .....+.|++.|+++..+-.-. . ..+. ..+.+ ...|+|+++||... .
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~--~---------~~~~~~~~~l--~~ad~I~~~GG~~~~~ 94 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLID--T---------ANDPDVVARL--LEADGIFVGGGNQLRL 94 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccC--C---------CCCHHHHHHH--hhCCEEEEcCCcHHHH
Confidence 35689988776654433 4457788888888766554321 0 0000 11112 36899999999421 1
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
........+.+.|++.+++|+++++.|+| +.++.+.
T Consensus 95 ~~~l~~t~~~~~i~~~~~~G~v~~G~SAG-A~~~~~~ 130 (210)
T cd03129 95 LSVLRETPLLDAILKRVARGVVIGGTSAG-AAVMGET 130 (210)
T ss_pred HHHHHhCChHHHHHHHHHcCCeEEEcCHH-HHHhhhc
Confidence 11122334566677777799999999996 5567764
No 260
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=84.59 E-value=1.8 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 012037 296 NGSEEIEIVTIVDILRRAK 314 (472)
Q Consensus 296 ~g~~~~e~~~~~d~l~~a~ 314 (472)
-|++..|++.|+++|..+|
T Consensus 20 TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 20 TGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp --B-HHHHHHHHHHHHHTT
T ss_pred ceeccHHHhhHHHHHHHCc
Confidence 4899999999999999886
No 261
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=82.62 E-value=2.1 Score=41.76 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHH---hc
Q 012037 102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA---EE 178 (472)
Q Consensus 102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~---~~ 178 (472)
..++.+.++|..|..+-.+.. ...+++. ...+|.|++|||.........-+....+++.+. +.
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~-------------~~~l~~~-l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~ 89 (273)
T cd01747 24 SYVKFLESAGARVVPIWINES-------------EEYYDKL-FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDA 89 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCc-------------HHHHHHH-HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhc
Confidence 467888888988766554311 0112221 126899999999423321111223334444443 44
Q ss_pred C--CeEEEEchhhHHhhhc
Q 012037 179 K--RLYGAICAAPAVTLLP 195 (472)
Q Consensus 179 ~--k~I~aic~g~~~lLa~ 195 (472)
| .+|.++|-|-. +|+.
T Consensus 90 g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 90 GDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred CCCCcEEEEcHHHH-HHHH
Confidence 4 79999999765 4554
No 262
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=82.62 E-value=0.63 Score=41.19 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cccccCChHHHHHHHHHHhcC
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRLRDCEILKKITSKQAEEK 179 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~l~~~~~~~~~l~~~~~~~ 179 (472)
....+.|++.|++++.+..... .. . . ..+.+ ...|+|++.||... ......+..+.+.|++.+++|
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~-~~--~-----~---~~~~i--~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G 69 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDR-ND--A-----D---ILEAI--READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKG 69 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSC-GH--H-----H---HHHHH--HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEEeccCC-Ch--H-----H---HHHHH--HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCC
Confidence 3567899999998777765532 10 0 1 11112 26899999999421 112234566888999999999
Q ss_pred CeEEEEchhhHHhhhcC
Q 012037 180 RLYGAICAAPAVTLLPW 196 (472)
Q Consensus 180 k~I~aic~g~~~lLa~a 196 (472)
++|++..+| +.++...
T Consensus 70 ~vi~G~SAG-A~i~~~~ 85 (154)
T PF03575_consen 70 GVIIGTSAG-AMILGPS 85 (154)
T ss_dssp SEEEEETHH-HHCTSSB
T ss_pred CEEEEEChH-HhhccCc
Confidence 999999885 6555443
No 263
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=82.26 E-value=7.1 Score=40.10 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCCCEEEEEe-CCCCCHHHHHHHHHHHHhCC------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037 285 DRMPRVLIPI-ANGSEEIEIVTIVDILRRAK------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 357 (472)
Q Consensus 285 ~~~~~V~il~-~~g~~~~e~~~~~d~l~~a~------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG 357 (472)
...-+|+++- |-++.+. +..+...|..+. .++.++....=.+.+. .--...-...+..+ ...|.|+|||
T Consensus 296 ~~~V~IalVGKYt~l~Ds-Y~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~-~e~~~~~~~aW~~l--~~adGilvPG 371 (585)
T KOG2387|consen 296 QVPVRIALVGKYTKLSDS-YLSVVKALEHAALAINRKLEIVWIDSSDLEPETE-QEDPRKYHAAWQKL--KSADGILVPG 371 (585)
T ss_pred cCcEEEEEEeccccchHH-HHHHHHHHHHHHHHhcccceEEEEehhccccccc-ccChhHHHHHHHHh--ccCCeEEeCC
Confidence 3446777774 4455554 445555555543 5555554422101111 11111111233333 5689999999
Q ss_pred CCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHH
Q 012037 358 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIV 394 (472)
Q Consensus 358 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l 394 (472)
|.+ .. --+.-+...+.+.+++.+..+||-|..+
T Consensus 372 GFG-~R---GveG~i~Aak~ARen~iP~LGiCLGmQ~ 404 (585)
T KOG2387|consen 372 GFG-DR---GVEGKILAAKWARENKIPFLGICLGMQL 404 (585)
T ss_pred ccc-cc---chhHHHHHHHHHHhcCCCeEeeehhhhH
Confidence 984 22 3345566677778899999999999865
No 264
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=82.02 E-value=4 Score=39.28 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCcHHH-HHHHHHHHHhCCC-EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-ccc
Q 012037 85 KKVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVR 161 (472)
Q Consensus 85 ~kV~ill~~g~~~~e-~~~~~~~l~~ag~-~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~ 161 (472)
.||+|+-.-.-+..+ .....+.|++.|+ +++++..... . .. -.+ ...+.+ ...|+|++.||... ...
T Consensus 29 ~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r-~-~a-----~~~-~~~~~l--~~ad~I~~~GGnq~~l~~ 98 (250)
T TIGR02069 29 AIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRER-E-DA-----SDE-NAIALL--SNATGIFFTGGDQLRITS 98 (250)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCCh-H-Hc-----cCH-HHHHHH--hhCCEEEEeCCCHHHHHH
Confidence 589988765544444 3456778899898 4666655421 1 00 000 001112 26899999999421 112
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
......+.+.|++.+++|.+|++..+| +.++..
T Consensus 99 ~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~i~~~ 131 (250)
T TIGR02069 99 LLGDTPLLDRLRKRVHEGIILGGTSAG-AAVMSD 131 (250)
T ss_pred HHcCCcHHHHHHHHHHcCCeEEEccHH-HHhccc
Confidence 335567888999999999999999996 545543
No 265
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.76 E-value=11 Score=37.48 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=57.8
Q ss_pred CCcEEEEEeCCCCcH--HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 83 PPKKVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~~--~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
+++||+++..++-.. ..+..+.+.|++.|+++.+...... . .+... +.......+|.+++.||
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~----~~~~~-----~~~~~~~~~d~vi~~GG----- 66 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-D----NPYPV-----FLASASELIDLAIVLGG----- 66 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-h----ccccc-----hhhccccCcCEEEEECC-----
Confidence 478899998886433 3355667778889999777553321 1 01110 01111235899999999
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
|..+++.++.....+.+|++|-.||.
T Consensus 67 ----DGT~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 67 ----DGTVLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred ----cHHHHHHHHHhccCCCCEEEEecCCc
Confidence 46677788877778999999987333
No 266
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=79.09 E-value=3.4 Score=39.12 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=34.0
Q ss_pred CcccEEEEcCCccccc---------------cccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 145 QVFDLIALPGGMPGSV---------------RLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 145 ~~~D~vivpGG~~~~~---------------~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
...|.|+++||. +.. ....|.--+..||++.+++++|.+||=|-.
T Consensus 59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Q 118 (243)
T COG2071 59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQ 118 (243)
T ss_pred hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchH
Confidence 368999999993 211 122345677899999999999999999755
No 267
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=78.85 E-value=14 Score=38.60 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=55.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCC----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAG----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
-+|+++=-----...+..+.++|..+| ..+.+...+.. .+...+. ..+.. .+|.++||||++ .
T Consensus 289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse-~le~~~~------~~~~~----~~dgIlVPGGFG-~- 355 (533)
T COG0504 289 VTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSE-DLEEENA------AELEK----LVDGILVPGGFG-Y- 355 (533)
T ss_pred eEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccc-cccccch------hhhhh----cCCEEEeCCCCC-c-
Confidence 456665322223455778899998875 45555544432 2211110 01111 289999999963 2
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
+.-+--+..++.+.+++.|+.+||-|-+
T Consensus 356 --RG~eGkI~Ai~yAREn~iP~lGIClGmQ 383 (533)
T COG0504 356 --RGVEGKIAAIRYARENNIPFLGICLGMQ 383 (533)
T ss_pred --CchHHHHHHHHHHHhcCCCEEEEchhHH
Confidence 2345566678888889999999999744
No 268
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=78.82 E-value=3.8 Score=40.43 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC-CCcc-hhcccccHHHHHHHHHHHH
Q 012037 303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG-GVAG-AERLQKSRILKKLLKEQKV 380 (472)
Q Consensus 303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG-G~~~-~~~~~~~~~l~~~L~~~~~ 380 (472)
+-.+...|+..||++..+- +..|+ ...|-||+|| |..+ ..+........+-|++...
T Consensus 14 ~~si~nal~hlg~~i~~v~-------------------~P~DI--~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yie 72 (541)
T KOG0623|consen 14 VRSIRNALRHLGFSIKDVQ-------------------TPGDI--LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIE 72 (541)
T ss_pred HHHHHHHHHhcCceeeecc-------------------Cchhh--ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHh
Confidence 3344556666666665442 23344 4568899998 3222 2233456778899999999
Q ss_pred cCCeEEEEchhHHHHHH
Q 012037 381 AGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 381 ~g~~v~aic~G~~lLA~ 397 (472)
.|+++.+||-|...|-+
T Consensus 73 sgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 73 SGKPFMGICVGLQALFD 89 (541)
T ss_pred cCCCeEeehhhHHHHhc
Confidence 99999999999988864
No 269
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=78.41 E-value=5.4 Score=44.69 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=38.2
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+||.||+-.|++++.. -+.+..-+++...++++|++||.|=.+||.+
T Consensus 209 ~~yDGlflSNGPGdPe~---~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 209 EEYDGLFLSNGPGDPEL---CPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred cccceEEEeCCCCCchh---hHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 47999999999865442 3566677777776679999999999999975
No 270
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=78.14 E-value=5.4 Score=37.44 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=61.9
Q ss_pred CcEEEEEeCCCCcHHHH-HHHHHHHHhCCC-EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cc
Q 012037 84 PKKVLVPVGFGTEEMEA-VIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SV 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~-~~~~~~l~~ag~-~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~ 160 (472)
..||+++-+-+.+..+. ....+.|++.|+ +++++..+.- . ...... ....+ ...|+|++.||... ..
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~-~--~a~~~~-----~~~~l--~~ad~I~~~GG~~~~~~ 98 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSR-E--AANDPE-----VVARL--RDADGIFFTGGDQLRIT 98 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCCh-H--HcCCHH-----HHHHH--HhCCEEEEeCCcHHHHH
Confidence 56898888776554443 346677888887 4565544321 1 000000 01112 36899999999421 11
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
.......+.+.|++.+++|.++++..+| +.++..
T Consensus 99 ~~l~~t~l~~~l~~~~~~G~v~~G~SAG-A~i~~~ 132 (217)
T cd03145 99 SALGGTPLLDALRKVYRGGVVIGGTSAG-AAVMSD 132 (217)
T ss_pred HHHcCChHHHHHHHHHHcCCEEEEccHH-HHhhhh
Confidence 2234557788999999999999999996 545543
No 271
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=77.82 E-value=2 Score=40.41 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=30.4
Q ss_pred CcccEEEEcCCCcch--h-------------cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 348 SVYDLIILPGGVAGA--E-------------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 348 ~~~D~livpGG~~~~--~-------------~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
+..|.|++|||..+. . ...++.--+.+++...+++++|.+||-|..+|.-
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv 121 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV 121 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence 568999999997211 0 0112233456777778899999999999998854
No 272
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=77.52 E-value=5.7 Score=41.62 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=72.6
Q ss_pred CCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhccccccc--cc-CCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 012037 235 GPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEW--FF-DRMPRVLIPIANGSEEIEIVTIVDILR 311 (472)
Q Consensus 235 g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~--~~-~~~~~V~il~~~g~~~~e~~~~~d~l~ 311 (472)
|-.+-++=.++.+++..|..+--.+ .++-.... ..+.+ ++.-.. .. ....+|+|+.+|...-..-+.|....
T Consensus 200 Gd~~ll~~gik~Le~~tg~~vlGv~-P~~~~~~~-p~EDS--~~~~~~~~~~~~~~i~Iav~~lp~isNFtD~dpL~~~- 274 (486)
T COG1492 200 GDESLLDPGLKWLEELTGVPVLGVL-PYLKDALR-PAEDS--LSLEQPKAGGNKRAIRIAVIRLPRISNFTDFDPLRAE- 274 (486)
T ss_pred CCHHHHhhHHHHHHHhhCCeeEeec-cccccccC-ccccc--cCchhhcccCCCCceEEEEecCCCccccccchhhhcC-
Confidence 4445667788888888777642211 11111110 11111 111111 11 24468999999853322222222222
Q ss_pred hCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc--cccHHHHHHHHHHHHcCCeEEEEc
Q 012037 312 RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL--QKSRILKKLLKEQKVAGRIYGAVC 389 (472)
Q Consensus 312 ~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~--~~~~~l~~~L~~~~~~g~~v~aic 389 (472)
.+.+|.++..... + .+.|++|+||......++ .+...+-+-|.++.+++..|.+||
T Consensus 275 -~~v~v~~v~~~~~----------------l-----~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGIC 332 (486)
T COG1492 275 -PDVRVRFVKPGSD----------------L-----RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGIC 332 (486)
T ss_pred -CCeEEEEeccCCC----------------C-----CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEc
Confidence 4677777766542 3 347999999976321111 112223334555667788999999
Q ss_pred hhHHHHHH
Q 012037 390 SSPIVLHK 397 (472)
Q Consensus 390 ~G~~lLA~ 397 (472)
.|-.+|.+
T Consensus 333 GG~QmLG~ 340 (486)
T COG1492 333 GGYQMLGR 340 (486)
T ss_pred chHHhhhh
Confidence 99999875
No 273
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=76.76 E-value=9.2 Score=43.56 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=53.4
Q ss_pred EEeCCCCCHHHHHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccC-----CCcccEEEEcCCCcchhcc
Q 012037 292 IPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAA-----ESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 292 il~~~g~~~~e~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~-----~~~~D~livpGG~~~~~~~ 365 (472)
+++-|.++-... .+++.|+.. |.++.++-.+.- .++++. ...||.|||-+|++.+...
T Consensus 84 iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~---------------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~ 147 (918)
T PLN02889 84 TLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW---------------TWEEVYHYLYEEKAFDNIVISPGPGSPTCP 147 (918)
T ss_pred EEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC---------------CHHHHHhhhhcccCCCEEEECCCCCCccch
Confidence 344466655555 366667666 677766654421 232321 1468999999998544321
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..-....++|+++ .+.+|.+||-|-.+|+.+
T Consensus 148 ~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 148 ADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred HHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 1112234555543 478999999999988764
No 274
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=75.87 E-value=2.1 Score=38.87 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHhCC--CeEEEEEecCCcceecCCCcEEe-ecCCccccCCCcccEEEEcCCCcchhcccccH-----HHHHHHH
Q 012037 305 TIVDILRRAK--VDVVVASVERSTQIVASQGVKII-ADKSISDAAESVYDLIILPGGVAGAERLQKSR-----ILKKLLK 376 (472)
Q Consensus 305 ~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~-~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~-----~l~~~L~ 376 (472)
.+...|.... .+++++-+... ......--.+. -=..++++....||.+||-|.+. +.+.-.+ ++.+.+.
T Consensus 16 qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApv--e~~~fe~v~Yw~El~~i~d 92 (175)
T cd03131 16 QFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPV--EHLPFEQVDYWEELTEILD 92 (175)
T ss_pred HHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCc--ccCCccccchHHHHHHHHH
Confidence 4555665544 55666666543 11110000000 01256666668999999999763 2222222 4444444
Q ss_pred HHHHcCCeEEEEchhHHHH
Q 012037 377 EQKVAGRIYGAVCSSPIVL 395 (472)
Q Consensus 377 ~~~~~g~~v~aic~G~~lL 395 (472)
-..+++.....+|-|+.+.
T Consensus 93 wa~~~v~stl~iCWgaqaa 111 (175)
T cd03131 93 WAKTHVTSTLFSCWAAMAA 111 (175)
T ss_pred HHHHhCcchHHHHHHHHHH
Confidence 4446778999999999763
No 275
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=75.71 E-value=2 Score=39.03 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=50.9
Q ss_pred HHHHHHHhC--CCEEEEEeeCCCcceeccCCceee-eCCCcCCCCCCcccEEEEcCCccccccccCC-----hHHHHHHH
Q 012037 102 IIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSHQVFDLIALPGGMPGSVRLRDC-----EILKKITS 173 (472)
Q Consensus 102 ~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~-~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~-----~~~~~~l~ 173 (472)
.+...|... ..+++++-+..- ......-..+. --.++++.....||++||.|.. ...+.-. +++.+.+.
T Consensus 16 qf~rlL~~~~~qv~v~~~~~~~h-~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Yw~El~~i~d 92 (175)
T cd03131 16 QFLRLLGNTPLQVEITFIRPSSH-SSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAP--VEHLPFEQVDYWEELTEILD 92 (175)
T ss_pred HHHHHHhcCCccceEEEEecCCC-CCCCCCHHHHHHhccCHHHccccCCCEEEEeCCC--cccCCccccchHHHHHHHHH
Confidence 455555444 456777766542 11110000010 1135555666689999999974 3222222 25555555
Q ss_pred HHHhcCCeEEEEchhhHHhhhcC
Q 012037 174 KQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 174 ~~~~~~k~I~aic~g~~~lLa~a 196 (472)
-..+++.....+|-|....|...
T Consensus 93 wa~~~v~stl~iCWgaqaal~~~ 115 (175)
T cd03131 93 WAKTHVTSTLFSCWAAMAALYYF 115 (175)
T ss_pred HHHHhCcchHHHHHHHHHHHHHH
Confidence 55588999999999765444443
No 276
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=75.49 E-value=13 Score=41.62 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=48.6
Q ss_pred EEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 165 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~ 165 (472)
||+-|.++-.. ..+++.|++. ++++.++..+.. . ...+.+. ..||+|||.||.+.+. +
T Consensus 8 iL~ID~~DSft-~nl~~~l~~~~g~~~~v~vv~~d~~-~-----------~~~~~~l--~~~D~VVIspGPG~p~----~ 68 (742)
T TIGR01823 8 VLFIDSYDSFT-YNVVRLLEQQTDISVHVTTVHSDTF-Q-----------DQLLELL--PLFDAIVVGPGPGNPN----N 68 (742)
T ss_pred EEEEeCCcchH-HHHHHHHHHhcCCCcEEEEEeCCCC-c-----------hhhhhhh--cCCCEEEECCCCCCcc----c
Confidence 44445544333 3456667664 356666655421 0 0001112 2699999988843322 2
Q ss_pred hHHHHHHHHHHhc----CCeEEEEchhhHHhhhcC
Q 012037 166 EILKKITSKQAEE----KRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 166 ~~~~~~l~~~~~~----~k~I~aic~g~~~lLa~a 196 (472)
+.-..++++..+. .++|.+||-|.+ +|+.+
T Consensus 69 ~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a 102 (742)
T TIGR01823 69 AQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA 102 (742)
T ss_pred hhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence 2334455555554 499999999866 56654
No 277
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=73.05 E-value=3.3 Score=41.38 Aligned_cols=55 Identities=16% Similarity=-0.014 Sum_probs=40.6
Q ss_pred CcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 138 SISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 138 ~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+.+++-.-++|.|++--|.+++. .-+..++.+++.....++|.+||-|-+ +|+.|
T Consensus 212 ~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iPifGICLGHQ-llalA 266 (368)
T COG0505 212 SAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIPIFGICLGHQ-LLALA 266 (368)
T ss_pred CHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCCeEEEcHHHH-HHHHh
Confidence 33443334699999988854443 346788999999999999999999765 66654
No 278
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=72.06 E-value=19 Score=33.19 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred CcEEEEEeCCCC---cHHHHHHHHHHHH----hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 84 PKKVLVPVGFGT---EEMEAVIIVDVLR----RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 84 ~~kV~ill~~g~---~~~e~~~~~~~l~----~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
.+|+|++.++-- .-..+.+..++|. ..|-+|++.-.-.| . +.-+ ++. ..||.++|.|..
T Consensus 4 ~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~g-e--------fP~~---~Dl--~ky~gfvIsGS~ 69 (245)
T KOG3179|consen 4 QKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDG-E--------FPQE---EDL--EKYDGFVISGSK 69 (245)
T ss_pred ceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecC-C--------CCCh---hhh--hhhceEEEeCCc
Confidence 579999998632 2222334445554 44667766655444 1 1111 223 369999998874
Q ss_pred cccccccCC----hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 157 PGSVRLRDC----EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 157 ~~~~~l~~~----~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+. ..+ -.+..|+++.....+.|.+||-|-. ++|++
T Consensus 70 ~dA---f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 70 HDA---FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred ccc---cccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 222 223 3566788888778899999999766 56554
No 279
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=71.19 E-value=16 Score=31.81 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----ceecCCCcEEeecCCccccCCCcccEEEEcCCCc
Q 012037 285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST----QIVASQGVKIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
....+|.++-.+|++.-=.-......|.-+.+..++-...-. -.....|+++ +++....+.|+|++-||..
T Consensus 17 ~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~-----~~~~~~~~~D~vVlmGGLA 91 (147)
T PF09897_consen 17 KDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQV-----LGEKKDPHPDVVVLMGGLA 91 (147)
T ss_dssp TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE------EEEE--S-EEEEEEEGGGG
T ss_pred cCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCccccc-----ccccCCCCCCEEEEEcccc
Confidence 456799999999998765555555555555565555332210 1234556664 2222123489999999975
Q ss_pred chhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCC
Q 012037 361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGL 400 (472)
Q Consensus 361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGl 400 (472)
-+..-...+++.+.+.+...++ |.+||-=. ++.++|.
T Consensus 92 MP~~~v~~e~v~~li~ki~~~~--iiGiCFms-~F~kagW 128 (147)
T PF09897_consen 92 MPKSGVTPEDVNELIKKISPKK--IIGICFMS-MFEKAGW 128 (147)
T ss_dssp STTTS--HHHHHHHHHHHEEEE--EEEEEETT-HHHHTTH
T ss_pred cCCCCCCHHHHHHHHHHhCcCC--EEEEehHH-HHHHcCC
Confidence 4443345567888888876554 99999755 4556553
No 280
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.04 E-value=23 Score=35.14 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCEEEEEeCCCCCH--HHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEE--IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~--~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
++||+++.-++-.. ..+..+.+.|...|+++.+...... . .+... +.......+|++++.||.+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~-~----~~~~~-----~~~~~~~~~d~vi~~GGDG---- 68 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPK-D----NPYPV-----FLASASELIDLAIVLGGDG---- 68 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchh-h----ccccc-----hhhccccCcCEEEEECCcH----
Confidence 56799988876533 2355667778889998776543321 1 01110 1111124689999999963
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEch-hHH-HHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCS-SPI-VLH 396 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~-G~~-lLA 396 (472)
.+++.++.+...+.++.+|.. |.. +|+
T Consensus 69 -----T~l~~~~~~~~~~~pv~gin~~G~lGFL~ 97 (305)
T PRK02645 69 -----TVLAAARHLAPHDIPILSVNVGGHLGFLT 97 (305)
T ss_pred -----HHHHHHHHhccCCCCEEEEecCCcceEec
Confidence 456667777677899999998 653 444
No 281
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.91 E-value=30 Score=33.80 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=53.9
Q ss_pred cEEEEEeCCCCc--HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 85 KKVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~--~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|||+|+...+-. ...+..+.+.|+..|+++.+...... .... .... ...+....++|.+++-||
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~~~---~~~~---~~~~~~~~~~d~vi~iGG------- 66 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HLPE---FSEE---DVLPLEEMDVDFIIAIGG------- 66 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc---cccc---ccccccccCCCEEEEEeC-------
Confidence 579999877642 22345677778899999888643211 1100 0000 011112226899999999
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++.++ .+..+.+|.+|-.|
T Consensus 67 --DGTlL~a~~-~~~~~~pi~gIn~G 89 (277)
T PRK03708 67 --DGTILRIEH-KTKKDIPILGINMG 89 (277)
T ss_pred --cHHHHHHHH-hcCCCCeEEEEeCC
Confidence 356677777 77778999999885
No 282
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=69.49 E-value=4 Score=38.38 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc--------------cCCh
Q 012037 102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL--------------RDCE 166 (472)
Q Consensus 102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l--------------~~~~ 166 (472)
..++.+.++|..+..+..... . ..++.. ....|.|++|||..+.. .+ ..|.
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~~~-~------------~~~~~~-l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~ 93 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYDAD-D------------EELDEL-LDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDI 93 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS---H------------HHHHHH-HHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEccCCC-H------------HHHHHH-HhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHH
Confidence 346666777777666655421 0 001111 12589999999952221 00 1122
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHh
Q 012037 167 ILKKITSKQAEEKRLYGAICAAPAVT 192 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~~~l 192 (472)
--+.+++.+.+++++|.+||-|-.++
T Consensus 94 ~e~~l~~~a~~~~~PilGICrG~Q~l 119 (217)
T PF07722_consen 94 FELALIRNALGRGKPILGICRGMQLL 119 (217)
T ss_dssp HHHHHHHHHCCTT--EEEETHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcHHHHHH
Confidence 23456677778999999999986644
No 283
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.31 E-value=27 Score=34.14 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=53.7
Q ss_pred CEEEEEeCCCC-CHH-HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 288 PRVLIPIANGS-EEI-EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 288 ~~V~il~~~g~-~~~-e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
|||+|+.-.+- ... .+-.+.+.|+..|+++.+...... .... .. .....+....++|++|+.||.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~-~~~~---~~---~~~~~~~~~~~~d~vi~iGGDG----- 68 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYE-HLPE---FS---EEDVLPLEEMDVDFIIAIGGDG----- 68 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc---cc---ccccccccccCCCEEEEEeCcH-----
Confidence 57888877664 333 345667778899999887643221 1100 00 0011122124689999999963
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.+++.++ ....+.+|.+|..|..
T Consensus 69 ----TlL~a~~-~~~~~~pi~gIn~G~l 91 (277)
T PRK03708 69 ----TILRIEH-KTKKDIPILGINMGTL 91 (277)
T ss_pred ----HHHHHHH-hcCCCCeEEEEeCCCC
Confidence 3455566 5566889999998873
No 284
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=67.90 E-value=13 Score=42.38 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=53.0
Q ss_pred EEeCCCCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChH
Q 012037 89 VPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEI 167 (472)
Q Consensus 89 ill~~g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~ 167 (472)
||+-|+++-..+ .+++.|++. |.++.++-.+.- . +..-..+ ......||.|||-+|.+.+....+-..
T Consensus 84 iLlIDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~-~--------~~~~~~~-~~~~~~~d~IVlSPGPG~P~~~~d~Gi 152 (918)
T PLN02889 84 TLLIDNYDSYTY-NIYQELSIVNGVPPVVVRNDEW-T--------WEEVYHY-LYEEKAFDNIVISPGPGSPTCPADIGI 152 (918)
T ss_pred EEEEeCCCchHH-HHHHHHHHhcCCCEEEEeCCCC-C--------HHHHHhh-hhcccCCCEEEECCCCCCccchHHHHH
Confidence 566677766654 577778777 888877766521 1 1000000 000125899999888433322112223
Q ss_pred HHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 168 LKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 168 ~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
..++|.+. .+.+|.+||-|-+ .|+.
T Consensus 153 ~~~~i~~~--~~iPILGICLGhQ-~i~~ 177 (918)
T PLN02889 153 CLRLLLEC--RDIPILGVCLGHQ-ALGY 177 (918)
T ss_pred HHHHHHHh--CCCcEEEEcHHHH-HHHH
Confidence 35555543 5699999999766 4554
No 285
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=66.66 E-value=12 Score=34.98 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCCcHHH---HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGFGTEEME---AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e---~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.++|+++-+-+.+... .....++|+..|+++.-+..... +. ..+++. ..+-|+|+|.|| +..
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~-~~-----------~~Ie~~-l~~~d~IyVgGG--NTF 96 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP-PL-----------AAIENK-LMKADIIYVGGG--NTF 96 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC-CH-----------HHHHHh-hhhccEEEECCc--hHH
Confidence 5689998876654433 34578888888988776655421 11 111110 124789999888 333
Q ss_pred cc---cCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 161 RL---RDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 161 ~l---~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
.| ....-+.+.||+..++|++.++..+| +
T Consensus 97 ~LL~~lke~gld~iIr~~vk~G~~YiG~SAG-A 128 (224)
T COG3340 97 NLLQELKETGLDDIIRERVKAGTPYIGWSAG-A 128 (224)
T ss_pred HHHHHHHHhCcHHHHHHHHHcCCceEEeccC-c
Confidence 32 33456788999999999999999985 5
No 286
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=66.43 E-value=20 Score=33.33 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHH
Q 012037 97 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA 176 (472)
Q Consensus 97 ~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~ 176 (472)
..++...+..|++.|+.++++.++. +.+ .|.+||+|+-. .-+++..+.|+++.
T Consensus 29 ~~~~~~~y~al~~~gi~vDvv~~~~-------------------dL~--~Ykllv~P~~~------~l~~~~~~~L~~yV 81 (207)
T PF08532_consen 29 RDQVRGWYRALRELGIPVDVVSPDD-------------------DLS--GYKLLVLPSLY------ILSPEFAERLRAYV 81 (207)
T ss_dssp HHHHHHHHHHHHTTT--EEEE-TTS---------------------T--T-SEEEES--S------C--HHH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEecCcC-------------------Ccc--cCcEEEEeeEE------EEChHHHHHHHHHH
Confidence 4557788999999999999998762 122 59999999862 35688888999999
Q ss_pred hcCCeEEEEch
Q 012037 177 EEKRLYGAICA 187 (472)
Q Consensus 177 ~~~k~I~aic~ 187 (472)
++|..+..-+-
T Consensus 82 ~~GG~li~~~~ 92 (207)
T PF08532_consen 82 ENGGTLILTPR 92 (207)
T ss_dssp T-SS-EEE-TT
T ss_pred HCCCEEEEEcc
Confidence 99877665443
No 287
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.95 E-value=52 Score=32.68 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCcEEEEEeCCCCc-HHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccC-----CceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 83 PPKKVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASS-----GTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 83 ~~~kV~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~-----G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
+++||+|+.-.+-. ..+ +..+.+.|.+.|+++.+...... ...... |..+..-....+. ....|++++-||
T Consensus 4 ~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGG 81 (306)
T PRK03372 4 ASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGG 81 (306)
T ss_pred CccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccccccccchhhc-ccCCCEEEEEcC
Confidence 46789999876543 233 34566668888988877654321 110000 0000000000111 125899999999
Q ss_pred ccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..++...+.+..++.+|.+|-.|
T Consensus 82 ---------DGT~L~aar~~~~~~~PilGIN~G 105 (306)
T PRK03372 82 ---------DGTILRAAELARAADVPVLGVNLG 105 (306)
T ss_pred ---------CHHHHHHHHHhccCCCcEEEEecC
Confidence 467778888888889999999885
No 288
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=65.46 E-value=36 Score=29.69 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHH
Q 012037 97 EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQA 176 (472)
Q Consensus 97 ~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~ 176 (472)
..++...+..|++.|+.++++.++.. . ..||+||+|.-. ...+...+.|+++.
T Consensus 25 ~~~~~~~~~~l~~~gi~~d~v~~~~~-------------------l--~~y~~vi~P~~~------~~~~~~~~~l~~~v 77 (154)
T cd03143 25 LDLALALYRALRELGIPVDVVPPDAD-------------------L--SGYKLVVLPDLY------LLSDATAAALRAYV 77 (154)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC-------------------c--ccCCEEEECchh------cCCHHHHHHHHHHH
Confidence 45778899999999999999874321 1 169999999873 23467888999999
Q ss_pred hcCCeEEEEch
Q 012037 177 EEKRLYGAICA 187 (472)
Q Consensus 177 ~~~k~I~aic~ 187 (472)
++|..+.+-+.
T Consensus 78 ~~GG~li~~~~ 88 (154)
T cd03143 78 ENGGTLVAGPR 88 (154)
T ss_pred HCCCEEEEecC
Confidence 99887776554
No 289
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.30 E-value=54 Score=32.34 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCCCc-HHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 83 PPKKVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.+++|+|+.-.+-. ..+ +..+.+.|.+.|+++.+-..... .. +........+.+. ..+.|.+++-||
T Consensus 4 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~----~~~~~~~~~~~~~-~~~~d~vi~lGG----- 72 (292)
T PRK03378 4 HFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-EL----QLKNVKTGTLAEI-GQQADLAIVVGG----- 72 (292)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Ccccccccchhhc-CCCCCEEEEECC-----
Confidence 37789999876543 232 33466678888988776432211 11 1000000111121 125899999999
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++..+.....+.+|.+|..|
T Consensus 73 ----DGT~L~aa~~~~~~~~Pilgin~G 96 (292)
T PRK03378 73 ----DGNMLGAARVLARYDIKVIGINRG 96 (292)
T ss_pred ----cHHHHHHHHHhcCCCCeEEEEECC
Confidence 466777777777778999999885
No 290
>PRK06455 riboflavin synthase; Provisional
Probab=65.17 E-value=15 Score=32.51 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=52.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHh--CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC--cch
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRR--AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV--AGA 362 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~--a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~--~~~ 362 (472)
|+||+|+...--...=..+..+.|++ .+.++.++..-|- .-+.+.+...+.+ ..||++|..|-. ...
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa------~ELP~aakkL~~~---~~yDaVIaLG~VG~t~h 71 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGI------KDLPVAAKKLIEE---EGCDIVMALGMPGPTEK 71 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCH------HHHHHHHHHHHhc---CCCCEEEEecceeccCc
Confidence 57888887654333335889999999 4467777777662 1111111212222 569999988843 122
Q ss_pred hcccccHHHHHHHHHHHHcCCeEE
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYG 386 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~ 386 (472)
..+..+.-...+.+-..+.+++|+
T Consensus 72 ~d~Va~~vS~GL~~lsL~t~~PVi 95 (155)
T PRK06455 72 DKYCAHEASIGLIMAQLMTNKHII 95 (155)
T ss_pred chhHHHHHHHHHHHHHhhhCCCEE
Confidence 233344444555555566666664
No 291
>PRK06703 flavodoxin; Provisional
Probab=63.87 E-value=24 Score=30.75 Aligned_cols=88 Identities=23% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|++|.|+-+...--.+ .-.+.+.|+..++++++.....- ...++ .++|.|++..-..+...
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~viigspt~~~g~ 63 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM---------------DAEEL--LAYDGIILGSYTWGDGD 63 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC---------------CHHHH--hcCCcEEEEECCCCCCc
Confidence 4577777765443333 33455778888888887655431 11233 57898888542111111
Q ss_pred cc-ccHHHHHHHHHHHHcCCeEEEEchh
Q 012037 365 LQ-KSRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 365 ~~-~~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
+. .-..+++++++..-+++.++.+++|
T Consensus 64 ~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 64 LPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred CcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 11 1233445554434457788777766
No 292
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.64 E-value=52 Score=32.66 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=55.2
Q ss_pred CcEEEEEeCCCCc-HHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCc--ee---eeC-CCcCCCCCCcccEEEEcCC
Q 012037 84 PKKVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGT--RL---VAD-TSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~--~v---~~d-~~~~~~~~~~~D~vivpGG 155 (472)
|+||+|+..++-. ..+ +..+.+.|.+.|+++.+-..... .. ..... .+ ..+ ....+.. .+.|.+++-||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGG-IL-GYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-CccccccccccccccccChhhcc-cCcCEEEEEeC
Confidence 5689999876653 232 34566668888998877543211 11 00000 00 000 0011111 25799999999
Q ss_pred ccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++..+.....+.+|.+|-.|
T Consensus 78 ---------DGTlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 78 ---------DGTVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred ---------cHHHHHHHHHhcCCCCcEEEEeCC
Confidence 467777888888889999999875
No 293
>PRK09271 flavodoxin; Provisional
Probab=63.51 E-value=63 Score=28.53 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=48.3
Q ss_pred CEEEEEeCC--CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 288 PRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 288 ~~V~il~~~--g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
|||.|+-.. |....=.-.+.+.|+..|+++++...+.. .+. + ...+. .++|+|+|.....+.-.+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~-~~~---------~-~~~~~--~~~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQ-TLA---------E-YPLDP--EDYDLYLLGTWTDNAGRT 67 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccc-ccc---------c-cccCc--ccCCEEEEECcccCCCcC
Confidence 466666554 33333344556888888888876654332 100 0 11222 568999887621111111
Q ss_pred c-ccHHHHHHHHHHHHcCCeEEEEchh
Q 012037 366 Q-KSRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 366 ~-~~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
. .-..+.++|.....+++.++.+++|
T Consensus 68 p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 68 PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 1 1234455555544477888888776
No 294
>PRK05568 flavodoxin; Provisional
Probab=63.16 E-value=56 Score=27.90 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=49.8
Q ss_pred CcEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+++.|+-.. |....=...+.+.++..|.+++++....- .+ .+. .+||.|++...... ..
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~-~~--------------~~~--~~~d~iilgsp~y~-~~ 62 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA-SV--------------DDV--KGADVVALGSPAMG-DE 62 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC-CH--------------HHH--HhCCEEEEECCccC-cc
Confidence 3566666554 33333344566777778888888765531 11 123 37999998543110 11
Q ss_pred ccCChHHHHHHHHHH--hcCCeEEEEchhh
Q 012037 162 LRDCEILKKITSKQA--EEKRLYGAICAAP 189 (472)
Q Consensus 162 l~~~~~~~~~l~~~~--~~~k~I~aic~g~ 189 (472)
......+..|+.+.. .++|.++.+|+.|
T Consensus 63 ~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G 92 (142)
T PRK05568 63 VLEEGEMEPFVESISSLVKGKKLVLFGSYG 92 (142)
T ss_pred cccchhHHHHHHHhhhhhCCCEEEEEEccC
Confidence 111235667776653 3688888888743
No 295
>PRK05568 flavodoxin; Provisional
Probab=63.00 E-value=49 Score=28.27 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|+++.|+-+...--.+ .-.+.+.++..|.+++++..... ...++ .++|.|++...... ..
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~---------------~~~~~--~~~d~iilgsp~y~-~~ 62 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA---------------SVDDV--KGADVVALGSPAMG-DE 62 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC---------------CHHHH--HhCCEEEEECCccC-cc
Confidence 4566666665443333 34556777778888887765542 11244 67999888654311 11
Q ss_pred ccccHHHHHHHHHHH--HcCCeEEEEch
Q 012037 365 LQKSRILKKLLKEQK--VAGRIYGAVCS 390 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~--~~g~~v~aic~ 390 (472)
......+..++.+.. .+++.++.+|+
T Consensus 63 ~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 63 VLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred cccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 111234556665542 36888888887
No 296
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.85 E-value=68 Score=31.68 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCcEEEEEeCCCCc-HHH-HHHHHHHHHhCCCEEEEEeeCCC-cceec--cCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037 83 PPKKVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQ-LEVEA--SSGTRLVADTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 83 ~~~kV~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~vs~~~g-~~v~~--~~G~~v~~d~~~~~~~~~~~D~vivpGG~~ 157 (472)
.++||+|+.-.+-. ..+ +..+.+.|.+.|+++.+-..... ..... ..+... . ...+.. ...|.+++-||
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~D~vi~lGG-- 77 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHI-V--NKTELG-QYCDLVAVLGG-- 77 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccc-c--chhhcC-cCCCEEEEECC--
Confidence 36789999876543 222 34556668888988876432110 00100 011111 0 111111 25899999999
Q ss_pred ccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 158 GSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 158 ~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++..+.....+.+|.+|-.|
T Consensus 78 -------DGT~L~aa~~~~~~~~PilGIN~G 101 (296)
T PRK04539 78 -------DGTFLSVAREIAPRAVPIIGINQG 101 (296)
T ss_pred -------cHHHHHHHHHhcccCCCEEEEecC
Confidence 466777777777789999999885
No 297
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=62.34 E-value=40 Score=29.38 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHH
Q 012037 299 EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQ 378 (472)
Q Consensus 299 ~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~ 378 (472)
..-++......|++.|+.+++++++.. + .+|++||+|.-. ..+++..+.|+++
T Consensus 24 y~~~~~~~~~~l~~~gi~~d~v~~~~~----------------l-----~~y~~vi~P~~~------~~~~~~~~~l~~~ 76 (154)
T cd03143 24 YLDLALALYRALRELGIPVDVVPPDAD----------------L-----SGYKLVVLPDLY------LLSDATAAALRAY 76 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCC----------------c-----ccCCEEEECchh------cCCHHHHHHHHHH
Confidence 445788999999999999998874321 1 479999999864 2356888999999
Q ss_pred HHcCCeEEE
Q 012037 379 KVAGRIYGA 387 (472)
Q Consensus 379 ~~~g~~v~a 387 (472)
.++|..+.+
T Consensus 77 v~~GG~li~ 85 (154)
T cd03143 77 VENGGTLVA 85 (154)
T ss_pred HHCCCEEEE
Confidence 888876654
No 298
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=61.58 E-value=24 Score=37.12 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.+..+|+|..++-.+...-. +.|+.. +.+|.++.+.. +.. +.|++++||-.....
T Consensus 249 ~~~i~Iav~~lp~isNFtD~---dpL~~~~~v~v~~v~~~~-------------------~l~--~~dlvIlPGsk~t~~ 304 (486)
T COG1492 249 KRAIRIAVIRLPRISNFTDF---DPLRAEPDVRVRFVKPGS-------------------DLR--DADLVILPGSKNTIA 304 (486)
T ss_pred CCceEEEEecCCCccccccc---hhhhcCCCeEEEEeccCC-------------------CCC--CCCEEEeCCCcccHH
Confidence 34568999998854433332 334433 77777776653 233 489999999852222
Q ss_pred c---ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 161 R---LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 161 ~---l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
+ +.... +-+-|.++.+.+.+|.+||.|-+ +|.+
T Consensus 305 DL~~lr~~g-~d~~i~~~~~~~~~viGICGG~Q-mLG~ 340 (486)
T COG1492 305 DLKILREGG-MDEKILEYARKGGDVIGICGGYQ-MLGR 340 (486)
T ss_pred HHHHHHHcC-HHHHHHHHHhCCCCEEEEcchHH-hhhh
Confidence 1 22221 22245556677999999999643 4543
No 299
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=61.20 E-value=43 Score=29.81 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=55.3
Q ss_pred EEEEEeC--CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 86 KVLVPVG--FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 86 kV~ill~--~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
|++|+-. +|-.-.-...+..-|++.|++|++.-...- ...+..+||+|+|... .....
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~-----------------~~~~l~~ydavVIgAs---I~~~h 61 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV-----------------EEPALEDYDAVVIGAS---IRYGH 61 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh-----------------hccChhhCceEEEecc---hhhhh
Confidence 4444432 344333344566777888899888766531 1123458999999443 44455
Q ss_pred CChHHHHHHHHHHh--cCCeEEEEchh
Q 012037 164 DCEILKKITSKQAE--EKRLYGAICAA 188 (472)
Q Consensus 164 ~~~~~~~~l~~~~~--~~k~I~aic~g 188 (472)
-++.+.+|++++.. ..++.+.+|.+
T Consensus 62 ~~~~~~~Fv~k~~e~L~~kP~A~f~vn 88 (175)
T COG4635 62 FHEAVQSFVKKHAEALSTKPSAFFSVN 88 (175)
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEee
Confidence 67899999998875 57999999985
No 300
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.49 E-value=65 Score=31.67 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCCcEEEEEeCCCCcHHHHH-HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAV-IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~-~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
..++||+|+.-++-...++. .+.+.|.+.|+++.+-..... ... ..+. ...+. ..++|.+|+-||
T Consensus 8 ~~~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~~~-~~~~------~~~~~-~~~~Dlvi~iGG----- 73 (287)
T PRK14077 8 KNIKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-ILD-LPGY------GLDEL-FKISDFLISLGG----- 73 (287)
T ss_pred ccCCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhc-cccc------chhhc-ccCCCEEEEECC-----
Confidence 34778999988764333333 345567777887766443211 111 1111 11121 125899999999
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++..+.+...+.+|.+|-.|
T Consensus 74 ----DGT~L~aa~~~~~~~~PilGIN~G 97 (287)
T PRK14077 74 ----DGTLISLCRKAAEYDKFVLGIHAG 97 (287)
T ss_pred ----CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 466778888888889999999875
No 301
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.09 E-value=68 Score=31.90 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCEEEEEeCCCC-CHHHH-HHHHHHHHhCCCeEEEEEecCCcceecCC-----CcEEeecCCccccCCCcccEEEEcC
Q 012037 285 DRMPRVLIPIANGS-EEIEI-VTIVDILRRAKVDVVVASVERSTQIVASQ-----GVKIIADKSISDAAESVYDLIILPG 357 (472)
Q Consensus 285 ~~~~~V~il~~~g~-~~~e~-~~~~d~l~~a~~~v~~vs~~~~~~v~s~~-----G~~v~~d~~l~~~~~~~~D~livpG 357 (472)
.++++|+|+.-++- ...++ ..+.+.|...|+++.+...... ...... |..+..-....+. ..+.|++|+.|
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAV-DLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhh-hhcccccccccccccccccchhhc-ccCCCEEEEEc
Confidence 35678999977654 33333 3555668888888877654321 110000 0010000001121 13579999999
Q ss_pred CCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 358 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 358 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
|.+ -++...+.+...+.+|.+|..|..
T Consensus 81 GDG---------T~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 81 GDG---------TILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred CCH---------HHHHHHHHhccCCCcEEEEecCCC
Confidence 963 456677777778889999998875
No 302
>PRK05569 flavodoxin; Provisional
Probab=59.19 E-value=42 Score=28.65 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|.+|.|+-+...--.+ .-.+.+.+...|.++++...... ...++ .++|.|++........
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~---------------~~~~~--~~~d~iilgsPty~~~- 62 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA---------------KVEDV--LEADAVAFGSPSMDNN- 62 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC---------------CHHHH--hhCCEEEEECCCcCCC-
Confidence 3567777665443322 23455667777888877765542 11344 6799998865321111
Q ss_pred ccccHHHHHHHHHHH---HcCCeEEEEchh
Q 012037 365 LQKSRILKKLLKEQK---VAGRIYGAVCSS 391 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~---~~g~~v~aic~G 391 (472)
....+.+..++..+. -+++.++.++++
T Consensus 63 ~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 63 NIEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred cCChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 111234556665543 368888888874
No 303
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=59.16 E-value=65 Score=31.72 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=55.3
Q ss_pred CCcEEEEEeCCCCcHHH--HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 83 PPKKVLVPVGFGTEEME--AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e--~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
++++|+|+...+-.... +..+.+.|++.|+++.+...... .... .+ +.. ....+. ...+|++++.||
T Consensus 4 ~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~-~~~~-~~--~~~-~~~~~~-~~~~d~vi~~GG----- 72 (291)
T PRK02155 4 QFKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTAR-NIGL-TG--YPA-LTPEEI-GARADLAVVLGG----- 72 (291)
T ss_pred cCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hcCc-cc--ccc-cChhHh-ccCCCEEEEECC-----
Confidence 36789999877653222 45566678888988766432211 1100 00 000 011122 125899999999
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++.++.....+.++.+|-.|
T Consensus 73 ----DGt~l~~~~~~~~~~~pilGIn~G 96 (291)
T PRK02155 73 ----DGTMLGIGRQLAPYGVPLIGINHG 96 (291)
T ss_pred ----cHHHHHHHHHhcCCCCCEEEEcCC
Confidence 466777888777788899999885
No 304
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=58.95 E-value=1e+02 Score=27.55 Aligned_cols=110 Identities=25% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc----------eecCCCcEEeecCCccccC--CCcccEE
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ----------IVASQGVKIIADKSISDAA--ESVYDLI 353 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~----------v~s~~G~~v~~d~~l~~~~--~~~~D~l 353 (472)
..++|.|++-+|-+-.+-....-.|...|++|+++....... .....|..+.......+.. ..++|+|
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlI 103 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLI 103 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEE
Confidence 557999999999999999999999999999999855533101 1123466666543333321 1257766
Q ss_pred EE--cC-CCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 354 IL--PG-GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 354 iv--pG-G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
|= -| |. ...+ .+.+.++++..++.+.++.||--=+-+=+.+|
T Consensus 104 IDal~G~G~--~~~l--~~~~~~~i~~iN~~~~~viAiDiPSGl~~dtG 148 (169)
T PF03853_consen 104 IDALFGTGF--SGPL--RGPIAELIDWINASRAPVIAIDIPSGLDADTG 148 (169)
T ss_dssp EEES-STTG--GSCG--STCHHHHHHHHHHHCSEEEEESS-TTCBTTTB
T ss_pred EEecccCCC--CCCc--CHHHHHHHHHHhccCCcEEEecCCCCccCCCC
Confidence 52 22 21 1111 22344444444444888999976553333333
No 305
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=58.46 E-value=20 Score=40.44 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred CcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 145 ~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+||.+++-.|.+++. + -+.+..-+++....+++|.+||.|-. +||.+
T Consensus 209 ~~yDGlflSNGPGdPe-~--~~~~v~~vr~lL~~~~PvfGIClGHQ-llA~A 256 (1435)
T KOG0370|consen 209 EEYDGLFLSNGPGDPE-L--CPLLVQNVRELLESNVPVFGICLGHQ-LLALA 256 (1435)
T ss_pred cccceEEEeCCCCCch-h--hHHHHHHHHHHHhCCCCeEEEehhhH-HHHHh
Confidence 3799999999854333 2 35666777777777899999999744 67754
No 306
>PRK06756 flavodoxin; Provisional
Probab=58.17 E-value=51 Score=28.50 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=51.3
Q ss_pred CCEEEEEeCCCCCHHHH--HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIEI--VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~--~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|++|.|+-+...--.+- -.+.+.|+..|.++++...... + ...++ .+||.|++..-..+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-~-------------~~~~~--~~~d~vi~gspt~~~g~ 64 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-P-------------EASIL--EQYDGIILGAYTWGDGD 64 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-C-------------CHHHH--hcCCeEEEEeCCCCCCC
Confidence 46788887765433333 3456778888888877755432 0 12334 67899888652211111
Q ss_pred ccccHHHHHHHHHHH---HcCCeEEEEchhH
Q 012037 365 LQKSRILKKLLKEQK---VAGRIYGAVCSSP 392 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~---~~g~~v~aic~G~ 392 (472)
..+...+|+.+.. -+++.++..++|.
T Consensus 65 --~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 65 --LPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred --CcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 1234667766543 3688888887744
No 307
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=57.97 E-value=56 Score=29.09 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHH--
Q 012037 303 IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKV-- 380 (472)
Q Consensus 303 ~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~-- 380 (472)
...++.-|++.|+++++.-.+. ..+++..+||.++|... ....+-++.+.+|++++.+
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~-----------------~~~~~l~~ydavVIgAs---I~~~h~~~~~~~Fv~k~~e~L 77 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHA-----------------VEEPALEDYDAVVIGAS---IRYGHFHEAVQSFVKKHAEAL 77 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhh-----------------hhccChhhCceEEEecc---hhhhhhHHHHHHHHHHHHHHH
Confidence 3445566777777777665543 22234478999999653 2334567889999999874
Q ss_pred cCCeEEEEchhHH
Q 012037 381 AGRIYGAVCSSPI 393 (472)
Q Consensus 381 ~g~~v~aic~G~~ 393 (472)
+.++.+..|.+..
T Consensus 78 ~~kP~A~f~vnl~ 90 (175)
T COG4635 78 STKPSAFFSVNLT 90 (175)
T ss_pred hcCCceEEEeehh
Confidence 6789999998754
No 308
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=57.31 E-value=96 Score=25.82 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=43.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
|+|+|+=...-...--..++..|.+.|+++..+.++.+ .+. |.. .-.++.+. +...|.++|.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~-~i~---G~~--~y~sl~e~-p~~iDlavv~~~--------- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG-EIL---GIK--CYPSLAEI-PEPIDLAVVCVP--------- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS-EET---TEE---BSSGGGC-SST-SEEEE-S----------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce-EEC---cEE--eeccccCC-CCCCCEEEEEcC---------
Confidence 46666654321111123467777779999999999875 443 333 33445542 457888888432
Q ss_pred ChHHHHHHHHHHhcCCe
Q 012037 165 CEILKKITSKQAEEKRL 181 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~ 181 (472)
.+...+++++..+.|..
T Consensus 65 ~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVK 81 (116)
T ss_dssp HHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 24566677766666533
No 309
>PRK11914 diacylglycerol kinase; Reviewed
Probab=56.89 E-value=25 Score=34.75 Aligned_cols=87 Identities=20% Similarity=0.103 Sum_probs=49.9
Q ss_pred CCCcEEEEEeCCCC----cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037 82 VPPKKVLVPVGFGT----EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 82 ~~~~kV~ill~~g~----~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~ 157 (472)
..++|+.|++.+.. ....+....+.|++.|+++.++..+.... ...+.. +.....+|.|++.||.
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~-----~~~~a~-----~~~~~~~d~vvv~GGD- 74 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHD-----ARHLVA-----AALAKGTDALVVVGGD- 74 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHH-----HHHHHH-----HHHhcCCCEEEEECCc-
Confidence 34789999987632 22334467788999999887665543101 111111 1112358999999993
Q ss_pred ccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 158 GSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 158 ~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
..+.+-+......+.+++-+-.
T Consensus 75 --------GTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 75 --------GVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred --------hHHHHHhHHhccCCCcEEEEeC
Confidence 3333444444555666776644
No 310
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=56.27 E-value=72 Score=31.44 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCEEEEEeCCCCC-HHH-HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSE-EIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~-~~e-~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
+++|+|+.-.+-. ..+ +..+.+.|...|+++.+...... .. ....... ....+. .+.+|++|+.||.+
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~-~~-~~~~~~~---~~~~~~-~~~~d~vi~~GGDG---- 74 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTAR-NI-GLTGYPA---LTPEEI-GARADLAVVLGGDG---- 74 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Ccccccc---cChhHh-ccCCCEEEEECCcH----
Confidence 5679999877653 333 45556678888888766433221 11 0000000 011222 13689999999963
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.+++.++.+...+.++.+|..|..
T Consensus 75 -----t~l~~~~~~~~~~~pilGIn~G~l 98 (291)
T PRK02155 75 -----TMLGIGRQLAPYGVPLIGINHGRL 98 (291)
T ss_pred -----HHHHHHHHhcCCCCCEEEEcCCCc
Confidence 455666766667889999998873
No 311
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=56.03 E-value=73 Score=28.75 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=48.5
Q ss_pred EEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 86 KVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 86 kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
|++|+-+. |....=.-.+.+.|.. |.+++++....- ...+ ..+||+||+.++. ..-.
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~---------------~~~~--l~~yD~vIlGspi---~~G~ 60 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRI---------------EEPD--LSDYDRVVIGASI---RYGH 60 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhc---------------CccC--HHHCCEEEEECcc---ccCC
Confidence 55555443 3333333345677776 877777764421 0012 2369998885542 2122
Q ss_pred CChHHHHHHHHHH--hcCCeEEEEchh
Q 012037 164 DCEILKKITSKQA--EEKRLYGAICAA 188 (472)
Q Consensus 164 ~~~~~~~~l~~~~--~~~k~I~aic~g 188 (472)
-.+.+.+|+++.. -.+|+++.+|.|
T Consensus 61 ~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 61 FHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3578889998754 368899999985
No 312
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=55.83 E-value=36 Score=31.53 Aligned_cols=66 Identities=21% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHH
Q 012037 300 EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK 379 (472)
Q Consensus 300 ~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~ 379 (472)
.-++...+..|++.|+.+++++++. +. ++|.+||+|+-. .-+++..+.|+++.
T Consensus 29 ~~~~~~~y~al~~~gi~vDvv~~~~-------------------dL--~~Ykllv~P~~~------~l~~~~~~~L~~yV 81 (207)
T PF08532_consen 29 RDQVRGWYRALRELGIPVDVVSPDD-------------------DL--SGYKLLVLPSLY------ILSPEFAERLRAYV 81 (207)
T ss_dssp HHHHHHHHHHHHTTT--EEEE-TTS-----------------------TT-SEEEES--S------C--HHH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEecCcC-------------------Cc--ccCcEEEEeeEE------EEChHHHHHHHHHH
Confidence 4457888999999999999998753 22 569999999753 35778889999998
Q ss_pred HcCCeE-EEEchhH
Q 012037 380 VAGRIY-GAVCSSP 392 (472)
Q Consensus 380 ~~g~~v-~aic~G~ 392 (472)
++|..+ ++-++|.
T Consensus 82 ~~GG~li~~~~tg~ 95 (207)
T PF08532_consen 82 ENGGTLILTPRTGV 95 (207)
T ss_dssp T-SS-EEE-TTTT-
T ss_pred HCCCEEEEEcccCC
Confidence 876554 4444544
No 313
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.98 E-value=78 Score=31.24 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=53.7
Q ss_pred cEEEEEeCCCCcH-HH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCc--eeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 85 KKVLVPVGFGTEE-ME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGT--RLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 85 ~kV~ill~~g~~~-~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~--~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
|||+|+...+-.. .+ +..+.+.|++.|+++.+-..... ........ .........+. ...+|.+++-||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGG----- 73 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLD-FLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGG----- 73 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhccccccccccccccchhhc-ccCCCEEEEECC-----
Confidence 5788887765432 22 33456667788988877543211 11100000 00000011111 125899999999
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..++.-.+.+...+.+|.+|-.|
T Consensus 74 ----DGT~L~aa~~~~~~~~PilGIN~G 97 (292)
T PRK01911 74 ----DGTFLRTATYVGNSNIPILGINTG 97 (292)
T ss_pred ----cHHHHHHHHHhcCCCCCEEEEecC
Confidence 466777788777889999999885
No 314
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=54.71 E-value=87 Score=28.25 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=48.6
Q ss_pred EEEEEeCCCC--CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 289 RVLIPIANGS--EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 289 ~V~il~~~g~--~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
|++|+-+... ...=.-.+.+.|.. |.+++++..... ...++ .+||.||+.++.. .-.
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~---------------~~~~l--~~yD~vIlGspi~---~G~ 60 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRI---------------EEPDL--SDYDRVVIGASIR---YGH 60 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhc---------------CccCH--HHCCEEEEECccc---cCC
Confidence 5666555433 22223345677776 777777655431 11223 6799988866531 112
Q ss_pred ccHHHHHHHHHHH--HcCCeEEEEchh
Q 012037 367 KSRILKKLLKEQK--VAGRIYGAVCSS 391 (472)
Q Consensus 367 ~~~~l~~~L~~~~--~~g~~v~aic~G 391 (472)
-.+.+.+|+++.. -+++.++..|.|
T Consensus 61 ~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 61 FHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3577788887753 367888888887
No 315
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.12 E-value=76 Score=31.34 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=54.8
Q ss_pred CCCEEEEEeCCCC-CHHH-HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e-~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
.+++|+|+.-++- ...| +-.+.+.|...|+++.+...... ........... ..+. ...+|++|+.||.+
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~--~~~~~~~~~~~---~~~~-~~~~d~vi~~GGDG--- 73 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE--VLPGHGLQTVS---RKLL-GEVCDLVIVVGGDG--- 73 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh--hcCcccccccc---hhhc-ccCCCEEEEEeCcH---
Confidence 3668999977665 3333 33556678888888876543221 10111111111 1112 13589999999963
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.+++..+.+...+.+|.+|..|..
T Consensus 74 ------t~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 74 ------SLLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred ------HHHHHHHHhcCCCCCEEEEeCCcc
Confidence 345556666677889999998864
No 316
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=53.49 E-value=37 Score=33.95 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeE
Q 012037 238 TSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDV 317 (472)
Q Consensus 238 ~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v 317 (472)
++.+-+..++.+.-+.-+++ |+-=..++..||.....|+-+.. ..+|-++++.-=.-..++++--.+++-|-.+
T Consensus 167 ~ai~~a~~l~~~~pna~~l~----Qf~np~Np~~hy~ttg~EI~~q~--~g~vDi~V~gaGTGGTitgvGRylke~~~~~ 240 (362)
T KOG1252|consen 167 SAIGKAEELLNKTPNAYILD----QFHNPGNPLAHYETTGPEIWRQL--DGKVDIFVAGAGTGGTITGVGRYLKEQNPNI 240 (362)
T ss_pred HHHHHHHHHHHhCCChHHHH----HhcCCCCcccccccccHHHHHHh--cCCCCEEEeccCCCceeechhHHHHHhCCCC
Confidence 36666666666666655544 33334455555655666655433 5678888887555567788888899988888
Q ss_pred EEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc----hhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 318 VVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG----AERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 318 ~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~----~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
+++..+...++..+.+..=. .+..+..-.|| |+|+-... .+....+++-+..-|+...+-.+++++.+|+.
T Consensus 241 kVv~vdp~~S~~~~~~~~g~---~~~~I~GIGyg--~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan 315 (362)
T KOG1252|consen 241 KVVGVDPQESIVLSGGKPGP---TFHKIQGIGYG--FIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGAN 315 (362)
T ss_pred EEEEeCCCcceeccCCCCCC---CccceeccccC--cCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHH
Confidence 88888775333333221111 22333233566 66764311 11123456667777777777789999999999
Q ss_pred HHHHcC
Q 012037 394 VLHKHG 399 (472)
Q Consensus 394 lLA~aG 399 (472)
++|.--
T Consensus 316 ~~aAl~ 321 (362)
T KOG1252|consen 316 VAAALK 321 (362)
T ss_pred HHHHHH
Confidence 888643
No 317
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=53.47 E-value=80 Score=27.06 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=27.6
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchh
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
.+||.|++.....+.. ...+.+..|++....+++.++.+++|
T Consensus 49 ~~~d~iilgs~t~~~g--~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 49 ENYDLVFLGTWTWERG--RTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhCCEEEEEcCeeCCC--cCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 5789988876421111 12346777887776688888888876
No 318
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.05 E-value=93 Score=30.72 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=53.7
Q ss_pred CcEEEEEeCCCCc-HHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
+++|+|+...+-. ..+ +..+.+.|++.|+++.+...... .. ......... ..+. ...+|.+++-||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~-~~-~~~~~~~~~---~~~~-~~~~d~vi~~GG------ 71 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE-VL-PGHGLQTVS---RKLL-GEVCDLVIVVGG------ 71 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-Ccccccccc---hhhc-ccCCCEEEEEeC------
Confidence 6689999877653 222 34566678888988876543211 10 000011100 0111 125899999998
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..+++.++.+...+.+|.+|-.|
T Consensus 72 ---DGt~l~~~~~~~~~~~Pvlgin~G 95 (295)
T PRK01231 72 ---DGSLLGAARALARHNVPVLGINRG 95 (295)
T ss_pred ---cHHHHHHHHHhcCCCCCEEEEeCC
Confidence 355666677776788899999884
No 319
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.03 E-value=1e+02 Score=30.47 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=54.6
Q ss_pred CCCEEEEEeCCCC-CHHHHH-HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGS-EEIEIV-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~-~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
.+++|+|+.-++- ...++. .+.+.|...|+++.+-..... .. +........+.+. ..+.|++|+.||.+
T Consensus 4 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~----~~~~~~~~~~~~~-~~~~d~vi~lGGDG--- 74 (292)
T PRK03378 4 HFKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-EL----QLKNVKTGTLAEI-GQQADLAIVVGGDG--- 74 (292)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc----Ccccccccchhhc-CCCCCEEEEECCcH---
Confidence 4678999877654 333343 466678888888765432211 11 1000001111222 13589999999963
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
.+++..+.+...+.+|.+|..|.
T Consensus 75 ------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 ------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ------HHHHHHHHhcCCCCeEEEEECCC
Confidence 35566666666678999999988
No 320
>PRK09271 flavodoxin; Provisional
Probab=52.03 E-value=1.4e+02 Score=26.36 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=47.0
Q ss_pred cEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 85 KKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 85 ~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
+||.|+-.. |....=...+.+.|+..|+++++...... .+. + ...+. .++|+|+|.....+....
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~-~~~---------~-~~~~~--~~~d~vilgt~T~~~G~~ 67 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQ-TLA---------E-YPLDP--EDYDLYLLGTWTDNAGRT 67 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccc-ccc---------c-cccCc--ccCCEEEEECcccCCCcC
Confidence 366666544 44344444567888888988876654321 110 0 01122 268999986521111111
Q ss_pred cCChHHHHHHHHHH---hcCCeEEEEchh
Q 012037 163 RDCEILKKITSKQA---EEKRLYGAICAA 188 (472)
Q Consensus 163 ~~~~~~~~~l~~~~---~~~k~I~aic~g 188 (472)
.+.+..|+.... ..+|.++.+++|
T Consensus 68 --p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 68 --PPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred --CHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 123555554443 367888888885
No 321
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.50 E-value=1e+02 Score=30.55 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCEEEEEeCCCCC-HHHH-HHHHHHHHhCCCeEEEEEecCCcceecCCCc--EEee----cCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIANGSE-EIEI-VTIVDILRRAKVDVVVASVERSTQIVASQGV--KIIA----DKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~g~~-~~e~-~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~--~v~~----d~~l~~~~~~~~D~livpGG 358 (472)
|++|+|+.-++-. ..++ ..+.+.|...|+++.+...... .. ..... .+.. .....+. ..+.|++|+.||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGG 77 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGG-IL-GYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGG 77 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-CccccccccccccccccChhhc-ccCcCEEEEEeC
Confidence 5678888776552 3333 3556668888988876543221 11 00000 0000 0011222 135799999999
Q ss_pred CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.+ .++...+.+...+.+|.+|..|..
T Consensus 78 DG---------TlL~aar~~~~~~iPilGIN~G~l 103 (305)
T PRK02649 78 DG---------TVLSAARQLAPCGIPLLTINTGHL 103 (305)
T ss_pred cH---------HHHHHHHHhcCCCCcEEEEeCCCC
Confidence 63 456677777777899999998875
No 322
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.60 E-value=94 Score=30.64 Aligned_cols=95 Identities=8% Similarity=0.001 Sum_probs=53.9
Q ss_pred CEEEEEeCCCC-CHHHH-HHHHHHHHhCCCeEEEEEecCCcceecCCCcE--EeecCCccccCCCcccEEEEcCCCcchh
Q 012037 288 PRVLIPIANGS-EEIEI-VTIVDILRRAKVDVVVASVERSTQIVASQGVK--IIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 288 ~~V~il~~~g~-~~~e~-~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~--v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
|+|+|+.-++- ...++ ..+.+.|...|+++.+-..... ......... .......++. .++.|++|+.||.+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~lGGDG--- 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLD-FLKQDLKFHPSYDTFSDNEEL-DGSADMVISIGGDG--- 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhccccccccccccccchhhc-ccCCCEEEEECCcH---
Confidence 56888876654 33333 3455668888888776443221 111000000 0000011222 13589999999963
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
-++...+.+...+.+|.+|..|..
T Consensus 76 ------T~L~aa~~~~~~~~PilGIN~G~l 99 (292)
T PRK01911 76 ------TFLRTATYVGNSNIPILGINTGRL 99 (292)
T ss_pred ------HHHHHHHHhcCCCCCEEEEecCCC
Confidence 456667777777899999999884
No 323
>PLN02256 arogenate dehydrogenase
Probab=50.07 E-value=2.3e+02 Score=28.09 Aligned_cols=151 Identities=16% Similarity=0.075 Sum_probs=77.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
++++|+|+- +-.+.- .+...|...|+++..+..+.........|+.... ..++.-..+.|+||+.--.
T Consensus 35 ~~~kI~IIG---~G~mG~-slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~--~~~e~~~~~aDvVilavp~------ 102 (304)
T PLN02256 35 RKLKIGIVG---FGNFGQ-FLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFR--DPDDFCEEHPDVVLLCTSI------ 102 (304)
T ss_pred CCCEEEEEe---eCHHHH-HHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeC--CHHHHhhCCCCEEEEecCH------
Confidence 457899985 333322 2455566778887776655321111123554322 2333211357999986421
Q ss_pred cccHHHHHHHHHH----HHcCCeEEEEch--hHHHHHHcCCCC-C-ceeccChhhHhhhhcceecCCcEEECCCEEE-cC
Q 012037 366 QKSRILKKLLKEQ----KVAGRIYGAVCS--SPIVLHKHGLLK-A-KKATAHPSVIGKLTNEVVNGTKVVVDGKVIT-SR 436 (472)
Q Consensus 366 ~~~~~l~~~L~~~----~~~g~~v~aic~--G~~lLA~aGlL~-g-~~~T~~~~~~~~l~~~~~~~~~vv~dg~iiT-a~ 436 (472)
..+.+++++. ...+.+|..+++ |..+=+-...+. + +-+.+||..-.......+.+..++.++.++. ..
T Consensus 103 ---~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~ 179 (304)
T PLN02256 103 ---LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEG 179 (304)
T ss_pred ---HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCC
Confidence 1233333333 356788999999 443322222332 2 3567888776554444455566666665543 22
Q ss_pred ChhhHHHHHHHHHHH
Q 012037 437 GLANVIDFALAIVSK 451 (472)
Q Consensus 437 g~~~~~d~al~li~~ 451 (472)
......+....+++.
T Consensus 180 ~~~~~~~~l~~l~~~ 194 (304)
T PLN02256 180 EREARCERFLDIFEE 194 (304)
T ss_pred CCHHHHHHHHHHHHH
Confidence 233344445555543
No 324
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.44 E-value=1.3e+02 Score=29.79 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCCC-CHHH-HHHHHHHHHhCCCeEEEEEecCC-cceec--CCCcEEeecCCccccCCCcccEEEEcCCCc
Q 012037 286 RMPRVLIPIANGS-EEIE-IVTIVDILRRAKVDVVVASVERS-TQIVA--SQGVKIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e-~~~~~d~l~~a~~~v~~vs~~~~-~~v~s--~~G~~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
.++||+|+.-++- ...+ +..+.+.|...|+++.+-..... ..... ..+... ....+.. ...|++|+.||.+
T Consensus 4 ~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~D~vi~lGGDG 79 (296)
T PRK04539 4 PFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHI---VNKTELG-QYCDLVAVLGGDG 79 (296)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccc---cchhhcC-cCCCEEEEECCcH
Confidence 4678999977655 3333 33556668888888876432110 00100 011111 0112221 3589999999963
Q ss_pred chhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.++...+.+...+.+|.+|..|..
T Consensus 80 ---------T~L~aa~~~~~~~~PilGIN~G~l 103 (296)
T PRK04539 80 ---------TFLSVAREIAPRAVPIIGINQGHL 103 (296)
T ss_pred ---------HHHHHHHHhcccCCCEEEEecCCC
Confidence 455666666677889999998873
No 325
>PRK06455 riboflavin synthase; Provisional
Probab=48.66 E-value=48 Score=29.31 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=38.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhC--CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
|+||+|+...--...-..+.++.|++. +.++.++..-+-. -+.+.+...+. ...||++|.-|-
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~------ELP~aakkL~~---~~~yDaVIaLG~ 65 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIK------DLPVAAKKLIE---EEGCDIVMALGM 65 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHH------HHHHHHHHHHh---cCCCCEEEEecc
Confidence 579999987644434467899999994 4666666655311 11222222222 136999998875
No 326
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=48.17 E-value=25 Score=37.12 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=49.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCCCcEEeecCCccccC-CCcccEEEEcCCCcchhc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAA-ESVYDLIILPGGVAGAER 364 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~-~~~~D~livpGG~~~~~~ 364 (472)
.|+-+++-|.++...+ .+++.|...+ --|.++-.+ +++.| .+.++. ...||+|+|..|++.+.
T Consensus 13 ~rl~~LlID~YDSyTf-Niy~ll~~~~~vp~V~~vh~~-----------~~~~d-~~~~l~q~~~FDaIVVgPGPG~P~- 78 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTF-NIYQLLSTINGVPPVVIVHDE-----------WTWED-AYHYLYQDVAFDAIVVGPGPGSPM- 78 (767)
T ss_pred hheeEEEEecccchhh-hHHHHHHHhcCCCcEEEEecc-----------ccCHH-HHHHHhhccccceEEecCCCCCCC-
Confidence 3455555565555544 5667776654 222222222 23333 333331 14599999987775432
Q ss_pred ccccHHHHHHHHHHHH--cCCeEEEEchhHHHHH
Q 012037 365 LQKSRILKKLLKEQKV--AGRIYGAVCSSPIVLH 396 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~--~g~~v~aic~G~~lLA 396 (472)
-++-+..+.+... +..+|.+||-|-..|+
T Consensus 79 ---~a~d~gI~~rl~~~~~~iPilGICLGfQal~ 109 (767)
T KOG1224|consen 79 ---CAADIGICLRLLLECRDIPILGICLGFQALG 109 (767)
T ss_pred ---cHHHHHHHHHHHHhcCCCceeeeehhhHhHh
Confidence 2233333444333 3589999999987665
No 327
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=47.84 E-value=1.4e+02 Score=28.86 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCCc---------HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEc
Q 012037 83 PPKKVLVPVGFGTE---------EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALP 153 (472)
Q Consensus 83 ~~~kV~ill~~g~~---------~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivp 153 (472)
..++|+++..+|-. ...+..+.+.|++. |+|.-+.... .++ +.++|+|+|+
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~------------------~~I-P~~~d~Lvi~ 204 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLAN------------------EEI-PDDADVLVIA 204 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcc------------------ccc-CCCCCEEEEE
Confidence 45678887766643 45677777888777 7776555431 233 3479999998
Q ss_pred CCccccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 154 GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 154 GG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
|-.. . -.+.-..-|.++..+|..+...-.
T Consensus 205 ~P~~---~--ls~~e~~~l~~yl~~GG~ll~~~d 233 (271)
T PF09822_consen 205 GPKT---D--LSEEELYALDQYLMNGGKLLILLD 233 (271)
T ss_pred CCCC---C--CCHHHHHHHHHHHHcCCeEEEEEC
Confidence 7521 1 235555666666666655444433
No 328
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=46.38 E-value=1.4e+02 Score=27.57 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=27.3
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchh
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
++||+||+..... .. -+++-.+-|+++.++|+-++++..+
T Consensus 51 ~~~Dvvv~~~~~~--~~--l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 51 KGYDVVVFYNTGG--DE--LTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp CT-SEEEEE-SSC--CG--S-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred cCCCEEEEECCCC--Cc--CCHHHHHHHHHHHHcCCCEEEEccc
Confidence 7899999987541 11 3667778888899999999999933
No 329
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=45.77 E-value=43 Score=26.16 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 98 MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 98 ~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
..+..+.+.|++.||+|.-+.... +.. .+|+++|-|.
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~-------------------~~~--~~daiVvtG~ 44 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQ-------------------DLQ--NVDAIVVTGQ 44 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCcc-------------------ccC--CcCEEEEECC
Confidence 446778999999999976544221 222 6888888775
No 330
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=45.48 E-value=52 Score=33.18 Aligned_cols=138 Identities=13% Similarity=0.047 Sum_probs=71.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.+|+.|+.-+++...-...+.+.|...|+++.++...++++-.+.....-..+ .+.+......|.|+--|| +..
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~-~~~~~~~~r~d~IIaiGG-Gsv---- 97 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYD-ALLEAGLDRKSLIIALGG-GVV---- 97 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHH-HHHHcCCCCCCeEEEECC-hHH----
Confidence 36888887777766444557777888888777655554322111110000000 111112124588887777 232
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-CCCCCceeecCcchhccCCCCccccCcEEEeCCEEeC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-GLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTS 233 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-GlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa 233 (472)
-++-.|+...|.++.+++.|.+- +++.. .-..||.+..+.... .+-...+....++.|-.++.+
T Consensus 98 --~D~ak~vA~~~~rgip~i~VPTT---~~a~vds~~~~k~~i~~~~~k-n~~g~~~~P~~viiD~~~l~t 162 (345)
T cd08195 98 --GDLAGFVAATYMRGIDFIQIPTT---LLAQVDSSVGGKTGVNHPLGK-NLIGAFYQPKLVLIDTDFLKT 162 (345)
T ss_pred --HhHHHHHHHHHhcCCCeEEcchh---HHHHhhccCCCcceecCCCCC-ceecccCCCCEEEEehHHhhh
Confidence 24556777778889999999982 34542 234455443332211 111112333456677665554
No 331
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.40 E-value=1.1e+02 Score=29.95 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCEEEEEeCCCCCHHHHH-HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIANGSEEIEIV-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~-~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
+++|+|+.-++-...++. .+.+.|...|+++.+-..... .. ...+. ...+. ..++|++|+.||.+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-~~-~~~~~------~~~~~-~~~~Dlvi~iGGDG----- 75 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-IL-DLPGY------GLDEL-FKISDFLISLGGDG----- 75 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-hh-ccccc------chhhc-ccCCCEEEEECCCH-----
Confidence 567999977764444444 345567777777765432221 11 11111 11222 13689999999963
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
-+++..+.+...+.+|.+|..|..
T Consensus 76 ----T~L~aa~~~~~~~~PilGIN~G~l 99 (287)
T PRK14077 76 ----TLISLCRKAAEYDKFVLGIHAGHL 99 (287)
T ss_pred ----HHHHHHHHhcCCCCcEEEEeCCCc
Confidence 456677777777899999999873
No 332
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=44.94 E-value=1e+02 Score=27.48 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=50.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
+.++|.++-.- ....-...+..-|...|..+..+... ..... .+-|++|+.+..+
T Consensus 29 ~a~~I~i~G~G-~S~~~A~~~~~~l~~~g~~~~~~~~~-----------------~~~~~--~~~Dv~I~iS~sG----- 83 (179)
T TIGR03127 29 KAKRIFVAGAG-RSGLVGKAFAMRLMHLGFNVYVVGET-----------------TTPSI--KKGDLLIAISGSG----- 83 (179)
T ss_pred hCCEEEEEecC-HHHHHHHHHHHHHHhCCCeEEEeCCc-----------------ccCCC--CCCCEEEEEeCCC-----
Confidence 34566665544 33333344455566666666554211 01222 4568888887552
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEch
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
..+++++.++...++|..+++|+.
T Consensus 84 -~t~~~i~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 84 -ETESLVTVAKKAKEIGATVAAITT 107 (179)
T ss_pred -CcHHHHHHHHHHHHCCCeEEEEEC
Confidence 578899999999999999999986
No 333
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=44.67 E-value=76 Score=30.97 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=52.7
Q ss_pred CcEEEEEeCC--CCc--HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGF--GTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~--g~~--~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
|+|++|++.+ |-. ...+..+...|.+.|+++.+...+...... .+ .... ....+|.|++.||.
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~-----~~-~~~~----~~~~~d~ivv~GGD--- 67 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAA-----RY-VEEA----RKFGVDTVIAGGGD--- 67 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHH-----HH-HHHH----HhcCCCEEEEECCC---
Confidence 5789999988 532 233455777888899988877655320110 01 1111 11258999999993
Q ss_pred ccccCChHHHHHHHHHHh-cCC-eEEEE--chhhHHhhhc-CCC
Q 012037 160 VRLRDCEILKKITSKQAE-EKR-LYGAI--CAAPAVTLLP-WGL 198 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~-~~k-~I~ai--c~g~~~lLa~-aGl 198 (472)
..+.+.++.... ... +++-+ +++ - .+++ .|+
T Consensus 68 ------GTl~~v~~~l~~~~~~~~lgiiP~Gt~-N-~~a~~l~i 103 (293)
T TIGR00147 68 ------GTINEVVNALIQLDDIPALGILPLGTA-N-DFARSLGI 103 (293)
T ss_pred ------ChHHHHHHHHhcCCCCCcEEEEcCcCH-H-HHHHHcCC
Confidence 445555555544 233 45544 453 3 3555 554
No 334
>PRK05569 flavodoxin; Provisional
Probab=43.76 E-value=79 Score=26.92 Aligned_cols=89 Identities=20% Similarity=0.080 Sum_probs=49.2
Q ss_pred CcEEEEEeCCCC--cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGT--EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~--~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|.||.|+-+... ...=.-.+.+.++..|.++++.....- .. .+.. +||.|++....... .
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~-~~--------------~~~~--~~d~iilgsPty~~-~ 62 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADA-KV--------------EDVL--EADAVAFGSPSMDN-N 62 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcC-CH--------------HHHh--hCCEEEEECCCcCC-C
Confidence 346777665542 222233455666677888877765532 11 2333 79999984421000 0
Q ss_pred ccCChHHHHHHHHHH---hcCCeEEEEchhhH
Q 012037 162 LRDCEILKKITSKQA---EEKRLYGAICAAPA 190 (472)
Q Consensus 162 l~~~~~~~~~l~~~~---~~~k~I~aic~g~~ 190 (472)
....+.+..|+.+.. -++|.++.++++|+
T Consensus 63 ~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~ 94 (141)
T PRK05569 63 NIEQEEMAPFLDQFKLTPNENKKCILFGSYGW 94 (141)
T ss_pred cCChHHHHHHHHHhhccCcCCCEEEEEeCCCC
Confidence 111245666776654 36889988888643
No 335
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=43.60 E-value=1.9e+02 Score=30.30 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCCcEEEEEeCCC-C-----cHHHHHHHHHHHHhCCCEEEEEeeCCC
Q 012037 82 VPPKKVLVPVGFG-T-----EEMEAVIIVDVLRRAGAQVTMASVEPQ 122 (472)
Q Consensus 82 ~~~~kV~ill~~g-~-----~~~e~~~~~~~l~~ag~~v~~vs~~~g 122 (472)
.+++||++++... + ...-+..+.+.|.+.|++|.+++.+.+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5678999997431 1 123456677888899999999998754
No 336
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=43.11 E-value=1.9e+02 Score=24.72 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 86 KVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 86 kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
|+.|+-+. |....=...+.+.+...|.+++++-.- . . +. ... .+..+||.|++.....+.. .
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~-~-~--------~~--~~~--~~~~~~d~iilgs~t~~~g--~ 65 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRI-G-T--------LA--DAP--LDPENYDLVFLGTWTWERG--R 65 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccc-c-c--------cc--cCc--CChhhCCEEEEEcCeeCCC--c
Confidence 56665543 333333344557777777776522110 0 0 00 001 1223699998855311111 1
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchh
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
..+.+..|+++...++|.++.+|+|
T Consensus 66 ~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 66 TPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred CCHHHHHHHHHhcccCCEEEEEEcC
Confidence 2347888888876788999988885
No 337
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=42.71 E-value=41 Score=26.55 Aligned_cols=69 Identities=22% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCc-EEEe--CCEE---eCCCCCChHHH
Q 012037 169 KKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSN-IHVS--GEVT---TSRGPGTSFEF 242 (472)
Q Consensus 169 ~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~-~v~D--g~ii---Ta~g~~~~~dl 242 (472)
.+++++.+++.+.+..+|+.|..+=.-+.+|.+|. .|.. +++| |+.+ .++-...+.++
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~----------------~DPaVvvvde~g~~vIplL~GH~GGan~l 65 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKD----------------TDPAVVVVDEDGRFVIPLLGGHRGGANEL 65 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TT----------------T--EEEEE-TT--EEEEEE-TTTT-HHHH
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccC----------------CCCCEEEEeCCCCEEEEeccCCcchHHHH
Confidence 46899999999999999998887777777787764 2333 3444 4432 34444446777
Q ss_pred HHHHHHHHhCc
Q 012037 243 ALCLVEQLFGE 253 (472)
Q Consensus 243 al~li~~~~g~ 253 (472)
+..+-+.+-+.
T Consensus 66 A~~iA~~lga~ 76 (84)
T PF11760_consen 66 ARQIAELLGAQ 76 (84)
T ss_dssp HHHHHHHTT-E
T ss_pred HHHHHHHhCCE
Confidence 77766655443
No 338
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.60 E-value=1.9e+02 Score=23.84 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHH
Q 012037 297 GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLK 376 (472)
Q Consensus 297 g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~ 376 (472)
|....-...+...|.+.|..+..+.... .+. ..+... .+-|++|+.+..+ +++++.++++
T Consensus 9 G~S~~~a~~~~~~l~~~g~~~~~~~~~~--~~~----------~~~~~~--~~~d~vi~iS~sG------~t~~~~~~~~ 68 (128)
T cd05014 9 GKSGHIARKIAATLSSTGTPAFFLHPTE--ALH----------GDLGMV--TPGDVVIAISNSG------ETDELLNLLP 68 (128)
T ss_pred cHhHHHHHHHHHHhhcCCCceEEcccch--hhc----------cccCcC--CCCCEEEEEeCCC------CCHHHHHHHH
Confidence 4444444455566666676666552211 000 012222 4558888887552 6789999999
Q ss_pred HHHHcCCeEEEEchhH
Q 012037 377 EQKVAGRIYGAVCSSP 392 (472)
Q Consensus 377 ~~~~~g~~v~aic~G~ 392 (472)
...++|..+.+|+...
T Consensus 69 ~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 69 HLKRRGAPIIAITGNP 84 (128)
T ss_pred HHHHCCCeEEEEeCCC
Confidence 9999999999998753
No 339
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=42.60 E-value=2e+02 Score=28.89 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+|+.|+.-++....-.-.+.+.|...|+++.++...++.+-.+...+.=..+ .+.+...++.|.|+-.||- ...
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~-~~~~~~~~r~d~IIaiGGG-sv~---- 98 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYD-ALLEAGLDRKSLIIALGGG-VVG---- 98 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHH-HHHHcCCCCCCeEEEECCh-HHH----
Confidence 5777777666666555567778888888777665554311111000000000 1111122345888877773 122
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-CCCCCceeccChhhHhhhhcceecCCcEEECCCEEEc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-GLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITS 435 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-GlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~iiTa 435 (472)
++-+++...+.+|.+++.|.|-. ++.. .-..|+.+..+...+. +-........++.|-.++.+
T Consensus 99 --D~ak~vA~~~~rgip~i~VPTT~--~a~vds~~~~k~~i~~~~~kn-~~g~~~~P~~viiD~~~l~t 162 (345)
T cd08195 99 --DLAGFVAATYMRGIDFIQIPTTL--LAQVDSSVGGKTGVNHPLGKN-LIGAFYQPKLVLIDTDFLKT 162 (345)
T ss_pred --hHHHHHHHHHhcCCCeEEcchhH--HHHhhccCCCcceecCCCCCc-eecccCCCCEEEEehHHhhh
Confidence 34466666667899999998864 3432 2334443332221111 11223344556667554443
No 340
>PRK07308 flavodoxin; Validated
Probab=42.39 E-value=1e+02 Score=26.53 Aligned_cols=85 Identities=26% Similarity=0.289 Sum_probs=43.4
Q ss_pred CEEEEEeCC--CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 288 PRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 288 ~~V~il~~~--g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
.++.|+-+. |...-=.-.+.+.|+..|.++++...+.. ...++ .++|.|++.....+...+
T Consensus 2 ~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~---------------~~~~l--~~~d~vi~g~~t~g~G~~ 64 (146)
T PRK07308 2 ALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV---------------DASDF--EDADIAIVATYTYGDGEL 64 (146)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC---------------CHhHh--ccCCEEEEEeCccCCCCC
Confidence 355655443 22222233456777777877776544432 11233 568988885432111111
Q ss_pred cccHHHHHHHHHH---HHcCCeEEEEchh
Q 012037 366 QKSRILKKLLKEQ---KVAGRIYGAVCSS 391 (472)
Q Consensus 366 ~~~~~l~~~L~~~---~~~g~~v~aic~G 391 (472)
.+...+|++.. .-+++.++.+..|
T Consensus 65 --p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 65 --PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred --CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 23344554443 3357777777765
No 341
>PRK13054 lipid kinase; Reviewed
Probab=41.74 E-value=93 Score=30.58 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCC-cHHHHHHHHHHHHhCCCEEEEEeeCC-CcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 83 PPKKVLVPVGFGT-EEMEAVIIVDVLRRAGAQVTMASVEP-QLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 83 ~~~kV~ill~~g~-~~~e~~~~~~~l~~ag~~v~~vs~~~-g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
.|+|+.|++.+.. ....+......|+++|+++++..... + .. ..+..+ .....+|.|++.||
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~-~a-----~~~a~~-----~~~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKG-DA-----ARYVEE-----ALALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCC-cH-----HHHHHH-----HHHcCCCEEEEECC
Confidence 3678887777554 23445566777888998877644332 2 10 111111 11125899999999
No 342
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.71 E-value=1e+02 Score=26.39 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC-----cceecCCCcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS-----TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~-----~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
--||++.-.+|++.-=.-.+.-.+|.- =.+..++.. .-.....|+.+- ..++. +..|++++-||...
T Consensus 26 ~eki~fvG~~GvCtPFAeL~~favRDk---e~~fipd~d~ek~rkl~~~d~G~ql~---e~e~~--n~aDvvVLlGGLaM 97 (154)
T COG4090 26 EEKIVFVGCPGVCTPFAELLAFAVRDK---EQYFIPDLDFEKARKLELTDHGYQLG---EREEL--NSADVVVLLGGLAM 97 (154)
T ss_pred cceEEEecCCcccccHHHHHHHHhhch---heeecCCcChhHhheeeeeccceecC---Ccccc--ccccEEEEEccccc
Confidence 467888888988653222222233321 112223321 023345666662 23343 56899999999754
Q ss_pred hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 362 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 362 ~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
+..-...++..+++.+. .++.++++|-=. +++++|
T Consensus 98 P~~gv~~d~~kel~ee~--~~kkliGvCfm~-mF~rag 132 (154)
T COG4090 98 PKIGVTPDDAKELLEEL--GNKKLIGVCFMN-MFERAG 132 (154)
T ss_pred CcCCCCHHHHHHHHHhc--CCCceEEeeHHH-HHHHcC
Confidence 44334556777788744 345799999744 455665
No 343
>PRK06703 flavodoxin; Provisional
Probab=41.04 E-value=84 Score=27.23 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=45.2
Q ss_pred CcEEEEEeCCC--CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFG--TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g--~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+||.|+-+.. ....=...+.+.|+..|+++++.....- . ..+.. +||.|++..-..+...
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~-~--------------~~~l~--~~d~viigspt~~~g~ 63 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM-D--------------AEELL--AYDGIILGSYTWGDGD 63 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC-C--------------HHHHh--cCCcEEEEECCCCCCc
Confidence 35677776553 3333334456777788888887665421 0 01222 6888888431101111
Q ss_pred ccCChHHHHHHHHH---HhcCCeEEEEchh
Q 012037 162 LRDCEILKKITSKQ---AEEKRLYGAICAA 188 (472)
Q Consensus 162 l~~~~~~~~~l~~~---~~~~k~I~aic~g 188 (472)
. .+.+..|+... .-+++.++.++.|
T Consensus 64 ~--p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 64 L--PYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred C--cHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 1 12344454433 3457888888775
No 344
>PRK12361 hypothetical protein; Provisional
Probab=40.87 E-value=3.6e+02 Score=29.07 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchhh
Q 012037 165 CEILKKITSKQAEEKRLYGAICAAP 189 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g~ 189 (472)
-+...+||.+..++++.|.--|.+|
T Consensus 161 l~~a~~~i~~~~~~~~~VlVHC~~G 185 (547)
T PRK12361 161 LNQAINWIHRQVRANKSVVVHCALG 185 (547)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3678899999999999999999965
No 345
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=40.46 E-value=79 Score=27.66 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=59.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc----ceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~----~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
...||.+.=.+|+...=+-.+....|.-+.+..++....-. -.....|.++.-+ ..+. +.|+|++-||..-
T Consensus 18 ~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~----~~~~-~~D~vVlmGGLAM 92 (147)
T PF09897_consen 18 DGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLGE----KKDP-HPDVVVLMGGLAM 92 (147)
T ss_dssp T-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EEE----E--S--EEEEEEEGGGGS
T ss_pred CCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccccc----cCCC-CCCEEEEEccccc
Confidence 35789999999988654444555555555566666543211 1223445553111 1222 3899999999633
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL 199 (472)
+..-..-+++.+.+.+....+ |.++|- -. ++.++|..
T Consensus 93 P~~~v~~e~v~~li~ki~~~~--iiGiCF-ms-~F~kagW~ 129 (147)
T PF09897_consen 93 PKSGVTPEDVNELIKKISPKK--IIGICF-MS-MFEKAGWD 129 (147)
T ss_dssp TTTS--HHHHHHHHHHHEEEE--EEEEEE-TT-HHHHTTHH
T ss_pred CCCCCCHHHHHHHHHHhCcCC--EEEEeh-HH-HHHHcCCc
Confidence 332233456777777665443 999998 34 68888743
No 346
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.40 E-value=79 Score=27.04 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=39.8
Q ss_pred ccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCC
Q 012037 127 ASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL 198 (472)
Q Consensus 127 ~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGl 198 (472)
..+|.++. ..++.+ ..|+|++-||..-+..-....++.+++.+. .++.+.++|- -. +.+.+|.
T Consensus 71 ~d~G~ql~---e~e~~n--~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCf-m~-mF~ragW 133 (154)
T COG4090 71 TDHGYQLG---EREELN--SADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCF-MN-MFERAGW 133 (154)
T ss_pred eccceecC---Cccccc--cccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeH-HH-HHHHcCc
Confidence 45566652 223333 489999999954333333446777888733 4568999998 45 5777774
No 347
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=40.19 E-value=78 Score=34.71 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh---cccccHHHHHH
Q 012037 298 SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE---RLQKSRILKKL 374 (472)
Q Consensus 298 ~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~---~~~~~~~l~~~ 374 (472)
-...++.+++|.|..+.++|+++|-+.= ..+ .+ +++.|+||=.|....+. ....|+.+.+.
T Consensus 465 kq~ysy~GvlE~LSG~p~dV~FisFdDi-----------~~~----gi-~~didViIN~G~a~ta~SGG~~W~d~~~~~a 528 (719)
T TIGR02336 465 KQTYSYYGILECLSGMPVEVEFISFDDI-----------LEH----GI-DSDIDVIINGGDADTAWSGGDVWTNPKLVET 528 (719)
T ss_pred hhhhhHHHHHHHhcCCCeeEEEecHHHH-----------hhc----CC-CcCCcEEEecCcccccccCccccCCHHHHHH
Confidence 4567888899999888899999988741 001 11 25678888777432111 23569999999
Q ss_pred HHHHHHcCCeEEEEchhH
Q 012037 375 LKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 375 L~~~~~~g~~v~aic~G~ 392 (472)
|+++.++|.-+++++.-.
T Consensus 529 Lr~fV~~GGglIGVgDps 546 (719)
T TIGR02336 529 VRAWVRGGGGFVGVGEPS 546 (719)
T ss_pred HHHHHHcCCeEEEEECCc
Confidence 999999999998888654
No 348
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=39.82 E-value=2.7e+02 Score=31.76 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=64.5
Q ss_pred CCCCEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-
Q 012037 285 DRMPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA- 362 (472)
Q Consensus 285 ~~~~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~- 362 (472)
.+.+||+|+--+|.+ +.|+ ...|..+||+..=|+.+.= .-.++..++|-.|+.+||.--.
T Consensus 1056 s~~PkVAilREeGvNg~rEM---a~af~~AgF~~~DVtmtDl---------------L~G~~~ld~frGlaf~GGFSYaD 1117 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREM---AAAFYAAGFETVDVTMTDL---------------LAGRHHLDDFRGLAFCGGFSYAD 1117 (1320)
T ss_pred cCCCceEEeeccccccHHHH---HHHHHHcCCceeeeeeehh---------------hcCceeHhHhcceeeecCcchHh
Confidence 345799999999875 4555 4467789987765554430 1111222467778888875211
Q ss_pred ---------hcccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHcCCCC
Q 012037 363 ---------ERLQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKHGLLK 402 (472)
Q Consensus 363 ---------~~~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~aGlL~ 402 (472)
..+..++.+..-..+|. ++...=.+||+|..+++..|.+-
T Consensus 1118 vLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~ 1167 (1320)
T KOG1907|consen 1118 VLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG 1167 (1320)
T ss_pred hhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC
Confidence 12345666666666665 45556689999999999999664
No 349
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=37.84 E-value=50 Score=32.94 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC-c-cccccccCChHHHHHHHHHH
Q 012037 99 EAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG-M-PGSVRLRDCEILKKITSKQA 176 (472)
Q Consensus 99 e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG-~-~~~~~l~~~~~~~~~l~~~~ 176 (472)
.+..+..+++..||++..+-.- + ++. .-|-+|+||- . +.........-+.+-||+..
T Consensus 13 n~~si~nal~hlg~~i~~v~~P-~------------------DI~--~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~Yi 71 (541)
T KOG0623|consen 13 NVRSIRNALRHLGFSIKDVQTP-G------------------DIL--NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYI 71 (541)
T ss_pred cHHHHHHHHHhcCceeeeccCc-h------------------hhc--cCceEeecCcccchHHHHHHhhhhhHHHHHHHH
Confidence 3455667777778777655322 1 222 4678999983 1 11122234566778899999
Q ss_pred hcCCeEEEEchhhHHhh
Q 012037 177 EEKRLYGAICAAPAVTL 193 (472)
Q Consensus 177 ~~~k~I~aic~g~~~lL 193 (472)
..+|++++||-|-..+.
T Consensus 72 esgkPfmgicvGlQaLF 88 (541)
T KOG0623|consen 72 ESGKPFMGICVGLQALF 88 (541)
T ss_pred hcCCCeEeehhhHHHHh
Confidence 99999999999755433
No 350
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=37.45 E-value=39 Score=33.37 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEeC-CCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceee-eCCCcCCCCCCcccEEEEcCC
Q 012037 80 SAVPPKKVLVPVG-FGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLV-ADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 80 ~~~~~~kV~ill~-~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~-~d~~~~~~~~~~~D~vivpGG 155 (472)
..+++.||+||=. +.-...| ..+...|.... .+++++.+..- .-.......+. --.+++++....||++||.|.
T Consensus 30 qdirpL~I~IlNLMP~K~~TE-~Q~lrlL~~tplqv~v~f~~~~sh-~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 30 QDIRPLKIGILNLMPDKEETE-RQFLRLLSNTPLQVEVTFLYPASH-KSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp TTS--EEEEEE---SSHHHHH-HHHHHHCCSSSS-EEEEEE--S------SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred ccccceEEEEEecccchHHHH-HHHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 4677889999853 3333333 34444444443 56666665532 11111111111 113556666668999999997
Q ss_pred cccccccc---CChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 156 MPGSVRLR---DCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 156 ~~~~~~l~---~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
....-... --+++.+.+....+|.....-+|=|+.
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAq 145 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQ 145 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHH
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHH
Confidence 32111111 126677777777788899999999644
No 351
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.34 E-value=2.2e+02 Score=22.83 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=51.7
Q ss_pred CCcEEEEEeCCCCcHHHHH-HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAV-IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~-~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
+.+||.+++..|+...-+. .+.+.+.+.|+++++-....+ .+.. .. .+||+|++..-
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~-~~~~-------------~~--~~~Dvill~pq------ 59 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYG-AAGE-------------KL--DDADVVLLAPQ------ 59 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHH-HHHh-------------hc--CCCCEEEECch------
Confidence 3679999999997744222 245555667888776655432 1110 11 26898887332
Q ss_pred ccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcCCCCCCce
Q 012037 162 LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPWGLLRRKQ 203 (472)
Q Consensus 162 l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~aGlL~g~~ 203 (472)
+ ....+-+++.. +.+.++..|-. -.| |.++|.+
T Consensus 60 i---~~~~~~i~~~~~~~~ipv~~I~~-~~Y-----~~mdg~~ 93 (95)
T TIGR00853 60 V---AYMLPDLKKETDKKGIPVEVING-AQY-----GKLTGAG 93 (95)
T ss_pred H---HHHHHHHHHHhhhcCCCEEEeCh-hhc-----ccCCccc
Confidence 1 22334444444 45789998877 343 5556654
No 352
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=37.32 E-value=58 Score=33.27 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=63.9
Q ss_pred HHHHHHHHhCchhHHhhhhccccccCCcchhh---hcccccccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEE
Q 012037 243 ALCLVEQLFGESVAKEIGELLLMHNADNSLKK---EEFNEVEWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVV 319 (472)
Q Consensus 243 al~li~~~~g~~~a~~va~~l~~~~~~~~~~~---~~~n~~~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~ 319 (472)
+..+++++.|..+|+-+. ........++ ..|..- ....||+++--||.-..=+.....+|...++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~ 73 (372)
T PLN00118 2 AAQLLRRLLGNRLAQILG----ASSSSSGAFSSSARAFSSS----STPITATLFPGDGIGPEIAESVKQVFTAAGVPIEW 73 (372)
T ss_pred hHHHHHHHhcccchhhhc----cccccCCCCcHHHHhhccC----CCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEE
Confidence 557889999988775432 2222222221 223321 23478999999998887778888888887765555
Q ss_pred EEecCCcceecCCCcEEeecCCccccCCCcccEEEE
Q 012037 320 ASVERSTQIVASQGVKIIADKSISDAAESVYDLIIL 355 (472)
Q Consensus 320 vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~liv 355 (472)
...+-|.......|-.+ ++..++.+ ..+|+++.
T Consensus 74 ~~~~~G~~~~~~~G~~l-p~~~l~~~--~~~da~L~ 106 (372)
T PLN00118 74 EEHYVGTTVDPRTGSFL-TWESLESV--RRNKVGLK 106 (372)
T ss_pred EEEeCcHHHHHhcCCcC-CHHHHHHH--HHCCEEEE
Confidence 55442214444556444 45577777 78999887
No 353
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=36.89 E-value=66 Score=28.56 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeC
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE 120 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~ 120 (472)
.+|+.|++.||....++..+...|+.+|..+..++..
T Consensus 106 ~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 106 VPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 4689999999999888999999999999887777654
No 354
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=36.84 E-value=94 Score=28.50 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=53.7
Q ss_pred CcEEEEEeCCC--CcHHHHHHHHHHHHh-CCCEEEEEeeCCCcc--eeccCCceeeeC---CCcCCCCCCcccEEEEcCC
Q 012037 84 PKKVLVPVGFG--TEEMEAVIIVDVLRR-AGAQVTMASVEPQLE--VEASSGTRLVAD---TSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~ill~~g--~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~--v~~~~G~~v~~d---~~~~~~~~~~~D~vivpGG 155 (472)
|+||+|+-+.. ....-+-.+.+.+++ .|.+++++......+ +....+.....+ ...+++. ++|.|++...
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELA--DYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHH--hCCEEEEEec
Confidence 35888887653 333334446677776 899998887642111 110111111000 1133333 7999988442
Q ss_pred ccccccccCChHHHHHHHHHH-------hcCCeEEEEchhh
Q 012037 156 MPGSVRLRDCEILKKITSKQA-------EEKRLYGAICAAP 189 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~-------~~~k~I~aic~g~ 189 (472)
...-.-.+.+..|+.+.- -.+|+.+.+++++
T Consensus 79 ---ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 116 (200)
T PRK03767 79 ---TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTG 116 (200)
T ss_pred ---ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCC
Confidence 111223466777777653 2378888887754
No 355
>PRK06756 flavodoxin; Provisional
Probab=36.53 E-value=1.5e+02 Score=25.56 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=49.3
Q ss_pred CcEEEEEeCCCC--cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGT--EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~--~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+||.|+-+... ...=...+.+.|+..|.++++...... + ...+.. +||.|++.....+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-~-------------~~~~~~--~~d~vi~gspt~~~g~ 64 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-P-------------EASILE--QYDGIILGAYTWGDGD 64 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-C-------------CHHHHh--cCCeEEEEeCCCCCCC
Confidence 457877765532 222234456778888888877765421 1 012233 6899988532101011
Q ss_pred ccCChHHHHHHHHHH---hcCCeEEEEchh
Q 012037 162 LRDCEILKKITSKQA---EEKRLYGAICAA 188 (472)
Q Consensus 162 l~~~~~~~~~l~~~~---~~~k~I~aic~g 188 (472)
-.+.+.+|+.+.. -++|+++.+++|
T Consensus 65 --~p~~~~~fl~~l~~~~l~~k~~~~fgt~ 92 (148)
T PRK06756 65 --LPDDFLDFYDAMDSIDLTGKKAAVFGSC 92 (148)
T ss_pred --CcHHHHHHHHHHhcCCCCCCEEEEEeCC
Confidence 1234777877653 368899998884
No 356
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=36.52 E-value=59 Score=29.89 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCEEEEEeCCCCC--HHHHHHHHHHHHh-CCCeEEEEEecCCcc--eecCCCcEEe---ecCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIANGSE--EIEIVTIVDILRR-AKVDVVVASVERSTQ--IVASQGVKII---ADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~g~~--~~e~~~~~d~l~~-a~~~v~~vs~~~~~~--v~s~~G~~v~---~d~~l~~~~~~~~D~livpGG 358 (472)
|+||+|+-+...- ..=.-.+.+.+.. .|.+++++......+ +....+.... +...++++ .++|.|++...
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDEL--ADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHH--HhCCEEEEEec
Confidence 4588888876443 2223445667776 788888887643201 1111111100 01124444 67998888553
Q ss_pred CcchhcccccHHHHHHHHHHH-------HcCCeEEEEchh
Q 012037 359 VAGAERLQKSRILKKLLKEQK-------VAGRIYGAVCSS 391 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 391 (472)
. ..-.-.+.+..|+.+.. -.+|+++.++++
T Consensus 79 t---y~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~ 115 (200)
T PRK03767 79 T---RFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTST 115 (200)
T ss_pred c---cCCCchHHHHHHHHHhccccccCCccCCEEEEEEeC
Confidence 2 11223456666776653 236777777765
No 357
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.10 E-value=2.5e+02 Score=27.68 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEee------------cCCccccCCCcccEE
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIA------------DKSISDAAESVYDLI 353 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~------------d~~l~~~~~~~~D~l 353 (472)
.++||+|+ |.-.+... +.-.|.++|.+|.+++.+.. ......|+++.. ....++ ...+|+|
T Consensus 4 ~~m~I~Ii---G~GaiG~~-lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~v 76 (313)
T PRK06249 4 ETPRIGII---GTGAIGGF-YGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED--MPPCDWV 76 (313)
T ss_pred cCcEEEEE---CCCHHHHH-HHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh--cCCCCEE
Confidence 34688887 44443332 23446778999999988652 222234444321 011112 2568999
Q ss_pred EEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 354 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 354 ivpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
||.-=. .....+.++|+.....+..|..+.+|.
T Consensus 77 ilavK~------~~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 77 LVGLKT------TANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred EEEecC------CChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 886321 123456666666665566677777664
No 358
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=35.73 E-value=2.5e+02 Score=26.43 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=34.6
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceec
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKAT 407 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T 407 (472)
..+|+++|.... | ..++.+|+.. +++|.+||.++...|.. .|||.+
T Consensus 68 ~GvdaiiIaCf~--------D-Pgl~~~Re~~--~~PviGi~eAsv~~A~~---vgrrfs 113 (230)
T COG4126 68 QGVDAIIIACFS--------D-PGLAAARERA--AIPVIGICEASVLAALF---VGRRFS 113 (230)
T ss_pred cCCcEEEEEecC--------C-hHHHHHHHHh--CCCceehhHHHHHHHHH---hcceEE
Confidence 458999997532 3 6778888776 67899999999888753 677763
No 359
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=35.64 E-value=38 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=31.2
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
+.|+++|=|+.. ..+....++++++.++.|.|.|+++=
T Consensus 45 ~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGtC 82 (131)
T PF01058_consen 45 EADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGTC 82 (131)
T ss_dssp TTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHHH
T ss_pred CceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCCc
Confidence 689999988731 13478899999999999999999873
No 360
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=35.62 E-value=1e+02 Score=33.70 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh---cccccHHHHHHHH
Q 012037 300 EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE---RLQKSRILKKLLK 376 (472)
Q Consensus 300 ~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~---~~~~~~~l~~~L~ 376 (472)
..++.+++|.|..+.++|+++|-+.= . .+ .+ +++.|+||=.|-...+. ....|++++..||
T Consensus 464 ~ysy~GilEaLSGlp~dV~FISFdDi---~--------~~----gi-~~didViINaGdA~TA~SGG~~W~d~~iv~~lr 527 (716)
T PF09508_consen 464 IYSYIGILEALSGLPFDVEFISFDDI---R--------EN----GI-LEDIDVIINAGDAGTAWSGGENWKDPKIVTALR 527 (716)
T ss_dssp THHHHHHHHHHHTSSSEEEEEEHHHH---H--------HH-----S--TT--EEEEEESTTSTTT-GGGGG-HHHHHHHH
T ss_pred hhhHHHHHHHhcCCCceeEEecHHHH---h--------hc----CC-cccCCEEEecCcccccccCccccCCHHHHHHHH
Confidence 38999999999999999999998741 0 01 11 25679888877432111 2457999999999
Q ss_pred HHHHcCCeEEEEchhHH
Q 012037 377 EQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 377 ~~~~~g~~v~aic~G~~ 393 (472)
++..+|.-.++++.-+.
T Consensus 528 ~fV~~GGGfIGVGEPsA 544 (716)
T PF09508_consen 528 EFVYNGGGFIGVGEPSA 544 (716)
T ss_dssp HHHHTT-EEEEEESTEE
T ss_pred HHHHcCCCEEEcCCCcc
Confidence 99999999998885443
No 361
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=35.40 E-value=2.8e+02 Score=26.42 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=54.0
Q ss_pred CcEEEEEeCCCCc--HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~~--~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
..|||++..-|.. .+++.-+.+.|....-+.+++--. +..|.. ..+ +.|+++|=|+.
T Consensus 3 ~ikva~~~L~gC~GC~~slldl~E~L~dll~~~div~~~------------~l~D~k--eiP--EvDValVEGsV----- 61 (247)
T COG1941 3 KIKVATVWLTGCSGCHMSLLDLYEKLLDLLEDADIVYCP------------TLVDEK--EIP--EVDVALVEGSV----- 61 (247)
T ss_pred ceEEEEEEeccccchHHHHHhHHHHHHHhhhhhcEEEee------------cccccc--cCC--cccEEEEeccc-----
Confidence 4578988888765 555666677776543323333211 111211 233 48999998883
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.|++-++.+++..++.|.+.|+++
T Consensus 62 --~~ee~lE~v~ElRekakivVA~Gs 85 (247)
T COG1941 62 --CDEEELELVKELREKAKIVVALGS 85 (247)
T ss_pred --CcHHHHHHHHHHHHhCcEEEEEec
Confidence 378899999999999999999976
No 362
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=35.10 E-value=82 Score=31.03 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCCCcEEEEEeC-CCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeee-CCCcCCCCCCcccEEEEcCC
Q 012037 80 SAVPPKKVLVPVG-FGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVA-DTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 80 ~~~~~~kV~ill~-~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~-d~~~~~~~~~~~D~vivpGG 155 (472)
..+++.||+||=. +.-...| ..+...|.... .+++++.+..- .-.-..-..+.. =.+++++....||++||.|.
T Consensus 31 qdirpL~I~ILNLMP~K~~TE-~Q~lRlL~ntplqv~i~~~~~~sh-~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 31 QDIRPLEILILNLMPKKIETE-NQFLRLLSNSPLQVNITLLRTDSR-KSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred ccccceeEEEEecCCccHHHH-HHHHHHhcCCCCceEEEEEEeccc-cCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 4567889999843 3334444 34555554443 45777766532 111000011111 23566665678999999997
Q ss_pred ccccccccC-----ChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 156 MPGSVRLRD-----CEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 156 ~~~~~~l~~-----~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
. ++.+.- -+++.+.+...-+|.....-+|=|+.
T Consensus 109 P--vE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAq 146 (300)
T TIGR01001 109 P--VELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQ 146 (300)
T ss_pred C--cCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 3 222221 26677777777778888999998643
No 363
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.88 E-value=42 Score=27.68 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=38.1
Q ss_pred EEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037 289 RVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 357 (472)
Q Consensus 289 ~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG 357 (472)
|+.+...+ ....+.+..+...|++.|++++++...-. . +.-.+.+...++|+|.+-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~-~-----------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP-P-----------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB--H-----------HHHHHHHHHTTCSEEEEEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC-H-----------HHHHHHHhcCCCcEEEEEc
Confidence 44555554 56688999999999999999998866542 1 2222223335789888854
No 364
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.55 E-value=3.8e+02 Score=24.89 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC------------CCcEEeecC----CccccCCCccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS------------QGVKIIADK----SISDAAESVYD 351 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~------------~G~~v~~d~----~l~~~~~~~~D 351 (472)
+||+|++-+|-+-.|-......|...|+.|+++-..+..++.+. .++++.... ..+=+ .|
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~~~~~~dvI----VD 125 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELEDEPESADVI----VD 125 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccccccccCCEE----EE
Q ss_pred EEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEE
Q 012037 352 LIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAV 388 (472)
Q Consensus 352 ~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~ai 388 (472)
+||=.|..+. -.+.....+++.++++++|.++
T Consensus 126 alfG~G~~g~-----lrep~a~~Ie~iN~~~~pivAV 157 (203)
T COG0062 126 ALFGTGLSGP-----LREPFASLIEAINASGKPIVAV 157 (203)
T ss_pred eceecCCCCC-----CccHHHHHHHHHHhcCCceEEE
No 365
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=34.14 E-value=2.8e+02 Score=26.58 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=50.8
Q ss_pred CCEEEEEeCCCCC---------HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037 287 MPRVLIPIANGSE---------EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 357 (472)
Q Consensus 287 ~~~V~il~~~g~~---------~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG 357 (472)
.++|+++.-.|-. ...+..+.+.|+.. |+|..+....+ ++ ++++|+|||+|
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~~------------------~I-P~~~d~Lvi~~ 205 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLANE------------------EI-PDDADVLVIAG 205 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCccc------------------cc-CCCCCEEEEEC
Confidence 4667777654433 56888889999988 98886655422 22 35789999987
Q ss_pred CCcchhcccccHHHHHHHHHHHHcC-CeEEEEchh
Q 012037 358 GVAGAERLQKSRILKKLLKEQKVAG-RIYGAVCSS 391 (472)
Q Consensus 358 G~~~~~~~~~~~~l~~~L~~~~~~g-~~v~aic~G 391 (472)
-. .. -.+.-+..|.++..+| +.++.+...
T Consensus 206 P~---~~--ls~~e~~~l~~yl~~GG~ll~~~d~~ 235 (271)
T PF09822_consen 206 PK---TD--LSEEELYALDQYLMNGGKLLILLDPF 235 (271)
T ss_pred CC---CC--CCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 53 11 2455566677776555 545554444
No 366
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.93 E-value=2.3e+02 Score=30.75 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCCcEEEEEeCCCCc-HHH-HHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 81 AVPPKKVLVPVGFGTE-EME-AVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~-~~e-~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
..+++||+|+.-.+-. ..+ +..+.+.|.+.|+++.+-..... .+..... . ..+ ...+. .+.|.+|+-||
T Consensus 287 ~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~-~~~~~~~-~-~~~-~~~~~--~~~dlvi~lGG--- 357 (569)
T PRK14076 287 RIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN-KLKNRLN-E-ECN-LIDDI--EEISHIISIGG--- 357 (569)
T ss_pred ccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh-hhccccc-c-ccc-ccccc--cCCCEEEEECC---
Confidence 5567899999776542 222 33456667778887766432211 1110000 0 000 00111 25799999999
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..++...+.+...+.+|.+|-.|
T Consensus 358 ------DGT~L~aa~~~~~~~~PilGin~G 381 (569)
T PRK14076 358 ------DGTVLRASKLVNGEEIPIICINMG 381 (569)
T ss_pred ------cHHHHHHHHHhcCCCCCEEEEcCC
Confidence 466777788777788999999885
No 367
>PRK03094 hypothetical protein; Provisional
Probab=33.85 E-value=91 Score=24.34 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCCEEEEE
Q 012037 98 MEAVIIVDVLRRAGAQVTMA 117 (472)
Q Consensus 98 ~e~~~~~~~l~~ag~~v~~v 117 (472)
..+..+.+.|++.||+|.-+
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l 27 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQL 27 (80)
T ss_pred cCcHHHHHHHHHCCCEEEec
Confidence 45677899999999998654
No 368
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=33.72 E-value=41 Score=28.76 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=33.3
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.+.|++||-|+-. .++....++++++.++.+.|+|+++-+.
T Consensus 44 ~~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 44 EEADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred cCceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCCccc
Confidence 5789999998752 1346778999999999999999987664
No 369
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.66 E-value=80 Score=26.44 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=35.7
Q ss_pred EeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 90 PVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 90 ll~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
.+..+........+...|+.+||++...+..- +.. ...+.....+.|+|.+.+-
T Consensus 6 ~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v--p~e----------~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 6 KPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ--TPE----------EIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred ecCCChhHHHHHHHHHHHHHCCCEEEECCCCC--CHH----------HHHHHHHHcCCCEEEEccc
Confidence 34445777788888999999999999887652 221 1112222236899999765
No 370
>PRK13337 putative lipid kinase; Reviewed
Probab=33.24 E-value=1.3e+02 Score=29.52 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=46.5
Q ss_pred CcEEEEEeCCCCc----HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGFGTE----EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~----~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
|+|+.+++.+..- ...+......|+++++++++...+.... ...+..+ .....+|.|++.||.
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~-----a~~~a~~-----~~~~~~d~vvv~GGD--- 67 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGD-----ATLAAER-----AVERKFDLVIAAGGD--- 67 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCC-----HHHHHHH-----HHhcCCCEEEEEcCC---
Confidence 4688888876322 2234456778889999887765542101 1111111 111257999999993
Q ss_pred ccccCChHHHHHHHHHHhc--CCeEEEEch
Q 012037 160 VRLRDCEILKKITSKQAEE--KRLYGAICA 187 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~--~k~I~aic~ 187 (472)
..+.+.+...... ..+++-+-.
T Consensus 68 ------GTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 68 ------GTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred ------CHHHHHHHHHhhCCCCCcEEEECC
Confidence 3344444443322 345666644
No 371
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.00 E-value=1.3e+02 Score=25.21 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred eCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 294 IANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 294 ~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
+...........+...|+.+||++...+..- +++...+.+...+.|+|.+.+..
T Consensus 7 ~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v------------p~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 7 PGLDGHDRGAKVIARALRDAGFEVIYTGLRQ------------TPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred cCCChhHHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEcccc
Confidence 3345778888889999999999998775542 22223333334678999998754
No 372
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=32.66 E-value=79 Score=29.17 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ 122 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g 122 (472)
|||.+-=-||+....+..+++.|++.|.+|.+++|...
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 56777777899999999999999888899999999864
No 373
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=32.54 E-value=2.5e+02 Score=27.65 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeee-CC--------CcCCC-CCCcccEEEEc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVA-DT--------SISNC-SHQVFDLIALP 153 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~-d~--------~~~~~-~~~~~D~vivp 153 (472)
.+||+|+ .-|.-..-+ ...|.++|.+|.+++.+.. ......|..+.. +. ...+. ....+|.|||.
T Consensus 5 ~m~I~Ii-G~GaiG~~l---A~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 5 TPRIGII-GTGAIGGFY---GAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred CcEEEEE-CCCHHHHHH---HHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 4689888 555544444 3456778999999987642 222223333221 00 00110 12368999985
Q ss_pred CCccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 154 GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 154 GG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
-= ..+...+.++++.....+..|..+.+|
T Consensus 80 vK------~~~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 80 LK------TTANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred ec------CCChHhHHHHHhhhcCCCCEEEEecCC
Confidence 31 012356777777776666677777774
No 374
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=32.50 E-value=2.8e+02 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCcHHHHH-HHHHHHHhCCCEEEEE
Q 012037 84 PKKVLVPVGFGTEEMEAV-IIVDVLRRAGAQVTMA 117 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~-~~~~~l~~ag~~v~~v 117 (472)
++||.+++..|....=+. ......++.|.++++-
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~ 37 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999877776 5666666677766653
No 375
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.48 E-value=2.9e+02 Score=22.87 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=46.3
Q ss_pred CEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 288 PRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 288 ~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
|+|+|+-...- .-. -..++..|...||++.-+.++++ . -.|.+..+ ++.+. +...|+++|.-.
T Consensus 1 ksiAVvGaS~~~~~~-g~~v~~~l~~~G~~v~~Vnp~~~-~---i~G~~~y~--sl~e~-p~~iDlavv~~~-------- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKF-GYRVLRNLKAAGYEVYPVNPKGG-E---ILGIKCYP--SLAEI-PEPIDLAVVCVP-------- 64 (116)
T ss_dssp -EEEEET--SSTTSH-HHHHHHHHHHTT-EEEEESTTCS-E---ETTEE-BS--SGGGC-SST-SEEEE-S---------
T ss_pred CEEEEEcccCCCCCh-HHHHHHHHHhCCCEEEEECCCce-E---ECcEEeec--cccCC-CCCCCEEEEEcC--------
Confidence 35666654321 112 23466777778999998888775 3 34555544 46653 567898888642
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchh
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
.+...+++++..+.|..-+-+..|
T Consensus 65 -~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 65 -PDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 235566777776666544444444
No 376
>PLN02727 NAD kinase
Probab=32.44 E-value=2e+02 Score=33.05 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=56.0
Q ss_pred CCCEEEEEeCCCCCHHHH-HHHHHHHHhC-CCeEEEEEecCCcceecCCCc---EEeecCCccccCCCcccEEEEcCCCc
Q 012037 286 RMPRVLIPIANGSEEIEI-VTIVDILRRA-KVDVVVASVERSTQIVASQGV---KIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~-~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~---~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
++++|+|+.-.+-...+. ..+++.|... |++|.+-....+ ......++ .........++. ...|++|+.||.+
T Consensus 677 p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~-~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDG 754 (986)
T PLN02727 677 TPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHD-IFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDG 754 (986)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHH-Hhhccccccccceecccchhhcc-cCCCEEEEECCcH
Confidence 468999998876544433 3356666665 666644322111 11011111 111111122321 3589999999963
Q ss_pred chhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
-++...+.+...+.+|.+|..|..
T Consensus 755 ---------TlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 755 ---------VILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred ---------HHHHHHHHhcCCCCCEEEEeCCCc
Confidence 456677777777889999999875
No 377
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=32.40 E-value=61 Score=33.59 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=29.7
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
..|.|+||||++ .. .-+--+...+.+.+++.+..+||-|-+
T Consensus 363 ~adGilvPGGFG-~R---GveG~i~Aak~ARen~iP~LGiCLGmQ 403 (585)
T KOG2387|consen 363 SADGILVPGGFG-DR---GVEGKILAAKWARENKIPFLGICLGMQ 403 (585)
T ss_pred cCCeEEeCCccc-cc---chhHHHHHHHHHHhcCCCeEeeehhhh
Confidence 479999999963 22 234455556667788999999999743
No 378
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=31.28 E-value=83 Score=28.02 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=29.8
Q ss_pred CcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhh
Q 012037 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAP 189 (472)
Q Consensus 145 ~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~ 189 (472)
.+||.|++..+ ...-..++.+.+||++. ++|.|+.+++.|
T Consensus 38 ~~yD~i~lG~w---~d~G~~d~~~~~fl~~l--~~KkV~lF~T~G 77 (160)
T PF12641_consen 38 EDYDLIFLGFW---IDKGTPDKDMKEFLKKL--KGKKVALFGTAG 77 (160)
T ss_pred CCCCEEEEEcC---ccCCCCCHHHHHHHHHc--cCCeEEEEEecC
Confidence 48999999554 33345689999999985 567788887754
No 379
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=31.27 E-value=1.7e+02 Score=28.94 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=60.5
Q ss_pred CCEEEEEeC-----CCCCHHHHHHHHHHHHhCCC-eEEEEEecCC---cceecCCCcEEeecCCccc-cCCCcccEEEEc
Q 012037 287 MPRVLIPIA-----NGSEEIEIVTIVDILRRAKV-DVVVASVERS---TQIVASQGVKIIADKSISD-AAESVYDLIILP 356 (472)
Q Consensus 287 ~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~-~v~~vs~~~~---~~v~s~~G~~v~~d~~l~~-~~~~~~D~livp 356 (472)
.+.|.|+.. .+-..+|+..+.+.++++|. ++.++-+-=+ +--....|-.+.+. .+.+ +....+|-++..
T Consensus 47 g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~-~~a~ll~~~g~d~vit~ 125 (308)
T TIGR01251 47 GKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPISAK-LVANLLETAGADRVLTV 125 (308)
T ss_pred CCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhccccCCCCCchHH-HHHHHHHHcCCCEEEEe
Confidence 356777721 24467899999999999995 4666655321 00011112111111 1111 111235666655
Q ss_pred CCCc---------chhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHH
Q 012037 357 GGVA---------GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLH 396 (472)
Q Consensus 357 GG~~---------~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA 396 (472)
.-+. ..+.+...+.+.+|+++...+.-.|.++-.|...+|
T Consensus 126 DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~~~viv~pd~g~~~~A 174 (308)
T TIGR01251 126 DLHSPQIQGFFDVPVDNLYASPVLAEYLKKKILDNPVVVSPDAGGVERA 174 (308)
T ss_pred cCChHHhcCcCCCceecccCHHHHHHHHHhhCCCCCEEEEECCchHHHH
Confidence 4321 123345567888999876445668999999998665
No 380
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=31.09 E-value=1.2e+02 Score=26.49 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeC
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE 120 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~ 120 (472)
...+|+.||+.||....++....+.+++.|+.+..++..
T Consensus 101 ~~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 101 PGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 345789999999988777777888999999998888774
No 381
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.83 E-value=2.9e+02 Score=26.80 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=43.4
Q ss_pred CcEEEEEeCCCCcHHHHHH-HHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVI-IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~-~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|++|+|+..+.-...++.. +.+.|++.|+++..- . .+.|.+++-||
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~------------------------~--~~~D~vi~lGG------- 48 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH------------------------P--KNANIIVSIGG------- 48 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC------------------------C--CCccEEEEECC-------
Confidence 4578888765544444433 444566777765411 1 24789999999
Q ss_pred cCChHHHHHHHHHHhc-CCeEEEEch
Q 012037 163 RDCEILKKITSKQAEE-KRLYGAICA 187 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~-~k~I~aic~ 187 (472)
|..+++.++.+... ..+|.+|-.
T Consensus 49 --DGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 49 --DGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred --cHHHHHHHHHhcccCCCeEEeEec
Confidence 35667777766544 667888877
No 382
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=29.96 E-value=3.2e+02 Score=26.69 Aligned_cols=86 Identities=20% Similarity=0.106 Sum_probs=51.3
Q ss_pred cEEEEEeCCCCcH--HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 85 KKVLVPVGFGTEE--MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 85 ~kV~ill~~g~~~--~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
++|++..-++... .........+...++.+.+...... ..... ..+.+...+.+|++++-||
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~--------~~~~~~~~~~~d~ivvlGG------- 64 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAE-ELKDF--------ADYVDDDEEKADLIVVLGG------- 64 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhh-hcccc--------cccccccccCceEEEEeCC-------
Confidence 4667776665532 2223344445555666655543321 11111 1222333357898888887
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|.-++...+...+.+.+|.+|-.|
T Consensus 65 --DGtlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 65 --DGTLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred --cHHHHHHHHHhccCCCCEEEEeCC
Confidence 467888899899899999999885
No 383
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=29.94 E-value=85 Score=28.13 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=49.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.+||.++ |-.+..+....+.|++.--.+.+++...| +....... ..++.+.....|+|+|.=|.
T Consensus 46 ~~~v~ll---G~~~~~~~~~~~~l~~~yp~l~i~g~~~g-~~~~~~~~-----~i~~~I~~~~pdiv~vglG~------- 109 (171)
T cd06533 46 GLRVFLL---GAKPEVLEKAAERLRARYPGLKIVGYHHG-YFGPEEEE-----EIIERINASGADILFVGLGA------- 109 (171)
T ss_pred CCeEEEE---CCCHHHHHHHHHHHHHHCCCcEEEEecCC-CCChhhHH-----HHHHHHHHcCCCEEEEECCC-------
Confidence 4567766 56666777777778777666667764444 32211111 12334444579999997663
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
|.-..|+.+..++...-..+|-|++
T Consensus 110 --PkQE~~~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 110 --PKQELWIARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred --CHHHHHHHHHHHHCCCCEEEEecee
Confidence 2333566666555544444444444
No 384
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.80 E-value=2.2e+02 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=26.7
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHHh--cCCeEEEEchh
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAE--EKRLYGAICAA 188 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~--~~k~I~aic~g 188 (472)
++|.+++-|| |..+++.++.... .+.+|.+|-.|
T Consensus 35 ~~Dlvi~iGG---------DGT~L~a~~~~~~~~~~iPilGIN~G 70 (265)
T PRK04885 35 NPDIVISVGG---------DGTLLSAFHRYENQLDKVRFVGVHTG 70 (265)
T ss_pred CCCEEEEECC---------cHHHHHHHHHhcccCCCCeEEEEeCC
Confidence 5799999999 4567777777665 68899999885
No 385
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=29.59 E-value=25 Score=31.11 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=29.0
Q ss_pred CCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEch
Q 012037 347 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 347 ~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
..+||.|||.. + .+...-.+.+..||++..-+||.|+-.|+
T Consensus 71 ~~~YD~I~lG~-P--vW~~~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 71 LSDYDTIFLGT-P--VWWGTPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp GGG-SEEEEEE-E--EETTEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred cccCCEEEEec-h--HHcCCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 37899999843 2 33334456788999998888999988886
No 386
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=29.44 E-value=1.5e+02 Score=32.71 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc---ccccCChHHHHHH
Q 012037 96 EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS---VRLRDCEILKKIT 172 (472)
Q Consensus 96 ~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~---~~l~~~~~~~~~l 172 (472)
+..++.+++|.|.-+.++|+++|-++ .... | + +.+.|+||=.|..... -....|+.+.+.|
T Consensus 466 q~ysy~GvlE~LSG~p~dV~FisFdD--i~~~--g-----------i-~~didViIN~G~a~ta~SGG~~W~d~~~~~aL 529 (719)
T TIGR02336 466 QTYSYYGILECLSGMPVEVEFISFDD--ILEH--G-----------I-DSDIDVIINGGDADTAWSGGDVWTNPKLVETV 529 (719)
T ss_pred hhhhHHHHHHHhcCCCeeEEEecHHH--Hhhc--C-----------C-CcCCcEEEecCcccccccCccccCCHHHHHHH
Confidence 46778888899988899999999774 1110 1 1 2357777766532111 1245789999999
Q ss_pred HHHHhcCCeEEEEchhhH
Q 012037 173 SKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 173 ~~~~~~~k~I~aic~g~~ 190 (472)
+++.++|..+++++. +.
T Consensus 530 r~fV~~GGglIGVgD-ps 546 (719)
T TIGR02336 530 RAWVRGGGGFVGVGE-PS 546 (719)
T ss_pred HHHHHcCCeEEEEEC-Cc
Confidence 999999999998888 54
No 387
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.21 E-value=87 Score=29.49 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=47.9
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 86 KVLVPVG---FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 86 kV~ill~---~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
+|++++. +.|...-+.++.+.+++.||++.+...... + . .... .+.+.-...+|++++..+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~-~----~~~~---~l~~~~~~~vdgii~~~~~------ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGD-D-A----KQAD---QIDQAIAQKVDAIIIQHGR------ 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCC-H-H----HHHH---HHHHHHHcCCCEEEEecCC------
Confidence 4777775 334455556777888888999888653321 1 0 0000 1111112268999996541
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEch
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.+++..+.+.++..+..
T Consensus 66 --~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 66 --AEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred --hhhhHHHHHHHHHcCCCEEEecC
Confidence 12234456666677778776644
No 388
>PRK13055 putative lipid kinase; Reviewed
Probab=29.18 E-value=2.2e+02 Score=28.53 Aligned_cols=65 Identities=26% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCEEEEEeCCCCC----HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCc
Q 012037 287 MPRVLIPIANGSE----EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 287 ~~~V~il~~~g~~----~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
|+|+.|++=|..- .-.+..+...|+..++++++...+.. .- .+.....++...++|.|++.||.+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~-~~--------~a~~~~~~~~~~~~d~vvv~GGDG 70 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPE-PN--------SAKNEAKRAAEAGFDLIIAAGGDG 70 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecC-Cc--------cHHHHHHHHhhcCCCEEEEECCCC
Confidence 4677776665332 23345667888899988776544321 00 000011111124578888888863
No 389
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=28.88 E-value=98 Score=28.24 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCcHH----HHHHHHHHHHhCCCEEEEEeeCC
Q 012037 84 PKKVLVPVGFGTEEM----EAVIIVDVLRRAGAQVTMASVEP 121 (472)
Q Consensus 84 ~~kV~ill~~g~~~~----e~~~~~~~l~~ag~~v~~vs~~~ 121 (472)
.+||+||+.||.+.. .+..+.+.|+..|..+..++...
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 479999999998753 46677888999999999998763
No 390
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.45 E-value=3.4e+02 Score=24.14 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=51.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
+.+||.++.. |....-...+..-|...|..+..++.. ..... .+-|++|+.+-.+
T Consensus 32 ~a~~I~i~G~-G~S~~~A~~~~~~l~~~g~~~~~~~~~-----------------~~~~~--~~~D~vI~iS~sG----- 86 (179)
T cd05005 32 NAKRIFVYGA-GRSGLVAKAFAMRLMHLGLNVYVVGET-----------------TTPAI--GPGDLLIAISGSG----- 86 (179)
T ss_pred hCCeEEEEec-ChhHHHHHHHHHHHHhCCCeEEEeCCC-----------------CCCCC--CCCCEEEEEcCCC-----
Confidence 4477777765 444444444555566667766655321 01122 4568888887542
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEch
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
..+++++.++...++|..+++|+.
T Consensus 87 -~t~~~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 87 -ETSSVVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred -CcHHHHHHHHHHHHCCCeEEEEEC
Confidence 577889999999999999998875
No 391
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=27.84 E-value=1.6e+02 Score=24.59 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHH---H
Q 012037 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQK---V 380 (472)
Q Consensus 304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~---~ 380 (472)
-.+.+.+...+++++++....- ...++ .++|.|++........... ...+.+|++... -
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~---------------~~~~l--~~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~ 78 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADA---------------DAEDL--LSYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDL 78 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccC---------------CHHHH--hcCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCC
Confidence 3455667777778777655431 12233 5689888865432111111 134445554433 3
Q ss_pred cCCeEEEEchhH
Q 012037 381 AGRIYGAVCSSP 392 (472)
Q Consensus 381 ~g~~v~aic~G~ 392 (472)
+|+.++.+++|.
T Consensus 79 ~gk~~~vfgt~g 90 (140)
T TIGR01753 79 GGKKVALFGSGD 90 (140)
T ss_pred CCCEEEEEecCC
Confidence 678888777764
No 392
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=27.72 E-value=37 Score=30.03 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 143 ~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
+..+||.|+| |. + .+...-.+.+..||++..-.||.|+-+|+.
T Consensus 70 d~~~YD~I~l-G~-P-vW~~~~~~pv~tFL~~~~~~gK~v~~F~T~ 112 (156)
T PF12682_consen 70 DLSDYDTIFL-GT-P-VWWGTPPPPVRTFLEQYDFSGKTVIPFCTS 112 (156)
T ss_dssp -GGG-SEEEE-EE-E-EETTEE-CHHHHHHHCTTTTTSEEEEEEE-
T ss_pred CcccCCEEEE-ec-h-HHcCCCCHHHHHHHHhcCCCCCcEEEEEee
Confidence 3458999999 32 2 232334568899999887789999998874
No 393
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=27.69 E-value=4e+02 Score=26.83 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHh---CCCEEEEEeeC--CCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRR---AGAQVTMASVE--PQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~---ag~~v~~vs~~--~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~ 157 (472)
+.+||+|+=..|+-..++.. .|.. -..++..++.+ .|+.+. ..|..+..+ .++.....+.|++|...+.
T Consensus 3 ~~~~vaIvGATG~vG~ellr---lL~~~~hP~~~l~~laS~~saG~~~~-~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~- 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLE---LLAERQFPVGELYALASEESAGETLR-FGGKSVTVQ-DAAEFDWSQAQLAFFVAGR- 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHH---HHhcCCCCceEEEEEEccCcCCceEE-ECCcceEEE-eCchhhccCCCEEEECCCH-
Confidence 46799999999999888854 5554 35666666543 244444 223222222 2222222368999987652
Q ss_pred ccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 158 GSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 158 ~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
+...+|..++.++|..|.-..+
T Consensus 77 --------~~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 77 --------EASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred --------HHHHHHHHHHHHCCCEEEECCh
Confidence 4567788888888887666554
No 394
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=27.46 E-value=2.9e+02 Score=25.86 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
.+.+.|+..||+|++.+.+.- +..+.+....+||+||.-+-.. ...+ +++..+-|+++.++|.=
T Consensus 27 ~~~~~L~~~gf~V~~~~~~d~-------------~~~~~~~~L~~~D~lV~~~~~~-~~~l--~~eq~~~l~~~V~~GgG 90 (215)
T cd03142 27 TIAAALAEYGFDVQTATLDEP-------------EHGLTEEVLAETDVLLWWGHIA-HDEV--KDEIVERVHRRVLDGMG 90 (215)
T ss_pred HHHHHHHhcCcEEEEEeccCc-------------cccCCHhHHhcCCEEEEeCCCC-cCcC--CHHHHHHHHHHHHcCCC
Confidence 466788889999996655431 1123333347899998733221 1122 34555666667777776
Q ss_pred EEEEchhH
Q 012037 385 YGAVCSSP 392 (472)
Q Consensus 385 v~aic~G~ 392 (472)
++++-.|.
T Consensus 91 lv~lHsg~ 98 (215)
T cd03142 91 LIVLHSGH 98 (215)
T ss_pred EEEECCCc
Confidence 77776555
No 395
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=27.42 E-value=1.2e+02 Score=25.54 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=57.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc---CCceeeeC--CCcCC--CC----CCcccEEEEc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS---SGTRLVAD--TSISN--CS----HQVFDLIALP 153 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~---~G~~v~~d--~~~~~--~~----~~~~D~vivp 153 (472)
|||.+.+..+.........+..|++.|++++++-.+.+..+... .+..+..+ ....+ .. ...+|+++|+
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~D~~vVa 80 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEGLTGEPVYTDWDTWDRGDPAEHIELSRWADAMVVA 80 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHGHCCSCEECTHCTCSTTTTTCHHHHHHTESEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhccccchhhhccccCCCCCCcCcccccccCCEEEEc
Confidence 68999999998888899999999999999997654432222211 22334433 10000 00 2358998886
Q ss_pred CCcccc-----ccccCChHHHHHHHHHHhcCCe-EEEEch
Q 012037 154 GGMPGS-----VRLRDCEILKKITSKQAEEKRL-YGAICA 187 (472)
Q Consensus 154 GG~~~~-----~~l~~~~~~~~~l~~~~~~~k~-I~aic~ 187 (472)
--..+. .-+. |.-+...+....+.+++ |++.+.
T Consensus 81 PaT~NtlaKiA~Gia-D~l~~~~~~~~l~~~~pvvi~P~m 119 (129)
T PF02441_consen 81 PATANTLAKIANGIA-DNLLTRVALAALKEGKPVVIAPAM 119 (129)
T ss_dssp EEEHHHHHHHHTT---SSHHHHHHHHHHHTTCGEEEEEEE
T ss_pred ccCHHHHHHHHhCCc-chHHHHHHHHHccCCCCeEEEEeC
Confidence 432111 1122 33555566666665555 555554
No 396
>PRK07308 flavodoxin; Validated
Probab=27.37 E-value=2.5e+02 Score=23.98 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=44.1
Q ss_pred cEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 85 KKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 85 ~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
.+|.|+-.. |....=...+.+.|+..|.++++.....- . ..+.. .+|.|++.....+...+
T Consensus 2 ~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~-~--------------~~~l~--~~d~vi~g~~t~g~G~~ 64 (146)
T PRK07308 2 ALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV-D--------------ASDFE--DADIAIVATYTYGDGEL 64 (146)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC-C--------------HhHhc--cCCEEEEEeCccCCCCC
Confidence 355555433 33333344466778888887776554421 1 01222 68888884321111111
Q ss_pred cCChHHHHHHHHH---HhcCCeEEEEchh
Q 012037 163 RDCEILKKITSKQ---AEEKRLYGAICAA 188 (472)
Q Consensus 163 ~~~~~~~~~l~~~---~~~~k~I~aic~g 188 (472)
.+.+.+|++.. .-+++.++.++.|
T Consensus 65 --p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 65 --PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred --CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 23456665553 2346777777774
No 397
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=27.23 E-value=81 Score=27.14 Aligned_cols=42 Identities=7% Similarity=0.023 Sum_probs=27.4
Q ss_pred CcccEEEEcCCccccccccCChHHHHHHHHHH--hcCCeEEEEchhh
Q 012037 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQA--EEKRLYGAICAAP 189 (472)
Q Consensus 145 ~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~--~~~k~I~aic~g~ 189 (472)
.+||.||+.++ ...-.-.+.+.+||++.. -+++.++.++.++
T Consensus 42 ~~yD~vi~gsp---iy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 42 SDYDAVIFGSP---IYAGRIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred ccCCEEEEEEE---EECCcCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 47999999654 222234577889998653 4567777666643
No 398
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.86 E-value=86 Score=28.88 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
..||.+...+ ...++....+...|+..||++...+.+ ++++.-.+.+...++|+|.+-.-
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~------------~p~~~l~~~~~~~~~d~v~lS~~ 142 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD------------VPPEEFVEAVKEHKPDILGLSAL 142 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC------------CCHHHHHHHHHHcCCCEEEEecc
Confidence 3577777776 578888999999999999999766533 22232333333467898888653
No 399
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=26.65 E-value=1e+02 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE 120 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~ 120 (472)
+|+.||+.||....++..+...++..|..+..|+..
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG 144 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG 144 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC
Confidence 799999999988777888889999999888777754
No 400
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.61 E-value=93 Score=29.52 Aligned_cols=85 Identities=5% Similarity=-0.096 Sum_probs=49.0
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 86 KVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 86 kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
||+|++.+ .|...-+.++.+.+++.||++.+...... . .. .. ..++.......|+||+.+..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~-~-~~----~~---~~i~~~~~~~~Dgiii~~~~------ 65 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGD-L-TK----QI---ADVEDLLTRGVNVLIINPVD------ 65 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCC-H-HH----HH---HHHHHHHHcCCCEEEEecCC------
Confidence 47777753 45555566777888888999877654321 1 00 00 11122222368999985431
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEch
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.+.+.+.+++..+.+.++..+..
T Consensus 66 --~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 66 --PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred --ccchHHHHHHHHHCCCCEEEecC
Confidence 12233456666778888888754
No 401
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=26.41 E-value=1.1e+02 Score=28.19 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=51.3
Q ss_pred CEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 288 PRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 288 ~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.+|.+...+ ....+....+..+|+.+||++..++.+- +++.-.+.+...++|+|.+-.... .
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v------------p~e~~v~~~~~~~pd~v~lS~~~~-----~ 147 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV------------PIDTVVEKVKKEKPLMLTGSALMT-----T 147 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC------------CHHHHHHHHHHcCCCEEEEccccc-----c
Confidence 566666665 5899999999999999999999876543 223233333346789888865431 1
Q ss_pred ccHHHHHHHHHHHHcC
Q 012037 367 KSRILKKLLKEQKVAG 382 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g 382 (472)
..+.+.++++...+++
T Consensus 148 ~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 148 TMYGQKDINDKLKEEG 163 (197)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 2344556666665553
No 402
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.33 E-value=1e+02 Score=29.65 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=30.5
Q ss_pred CCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 143 ~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
+..++|++++-|| |..+++..+.....+.+|.+|-.|
T Consensus 22 ~~~~~Dlvi~iGG---------DGTlL~a~~~~~~~~~PvlGIN~G 58 (246)
T PRK04761 22 PIEEADVIVALGG---------DGFMLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred CcccCCEEEEECC---------CHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3447899999999 467788888888889999999885
No 403
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.31 E-value=1.4e+02 Score=25.76 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=37.9
Q ss_pred CcEEEEEeC-CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 84 PKKVLVPVG-FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 84 ~~kV~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
.+||.+... .+........+...|+.+||++.+++.+- + ++.-.+.+...+.|+|.+-.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v--p----------~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT--S----------QEEFIDAAIETDADAILVSS 62 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC--C----------HHHHHHHHHHcCCCEEEEcC
Confidence 445555444 44677888888899999999999988663 2 11122222233688888854
No 404
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.31 E-value=91 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 347 ESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 347 ~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.+++|++|+.||.+ .+++..+.+...+.+|.+|..|..
T Consensus 23 ~~~~Dlvi~iGGDG---------TlL~a~~~~~~~~~PvlGIN~G~l 60 (246)
T PRK04761 23 IEEADVIVALGGDG---------FMLQTLHRYMNSGKPVYGMNRGSV 60 (246)
T ss_pred cccCCEEEEECCCH---------HHHHHHHHhcCCCCeEEEEeCCCC
Confidence 36789999999963 456777777777889999998863
No 405
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=26.20 E-value=4.2e+02 Score=28.34 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=53.0
Q ss_pred CCCcEEEEEeCCCCc-HHHH-HHHHHHHH-hCCCEEEEEeeCCCcceecc---CCc-ee-eeCCCcCCCCCCcccEEEEc
Q 012037 82 VPPKKVLVPVGFGTE-EMEA-VIIVDVLR-RAGAQVTMASVEPQLEVEAS---SGT-RL-VADTSISNCSHQVFDLIALP 153 (472)
Q Consensus 82 ~~~~kV~ill~~g~~-~~e~-~~~~~~l~-~ag~~v~~vs~~~g~~v~~~---~G~-~v-~~d~~~~~~~~~~~D~vivp 153 (472)
..+++|+|+.-++-. ..++ ..+.+.|+ ..|+++.+-..... ..... .+. .+ .....+.+.. ..+|+||+.
T Consensus 192 ~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~-~l~~~~~~~~~~~~~~~~~~~~~l~-~~~DlVIsi 269 (508)
T PLN02935 192 SDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK-ELLSESSYFNFVQTWEDEKEILLLH-TKVDLVITL 269 (508)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh-hhccccccccccccccccchhhhcc-cCCCEEEEE
Confidence 347899999876543 2222 33455566 46777766432211 11100 010 00 0001111111 258999999
Q ss_pred CCccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 154 GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 154 GG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|| |..++.-.+.+.....+|.+|-.|
T Consensus 270 GG---------DGTlL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 270 GG---------DGTVLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred CC---------cHHHHHHHHHhccCCCcEEEEeCC
Confidence 99 456777777777778899998774
No 406
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=26.17 E-value=2.7e+02 Score=25.83 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=53.7
Q ss_pred ccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEE
Q 012037 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHV 226 (472)
Q Consensus 147 ~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~ 226 (472)
-|.+++.-. ++++.-.+.+..||-...+.||++--.-.|+. ||+.|||+-. +..
T Consensus 88 AD~vVi~~P---M~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~------GLl~gKKv~~-----------------l~s 141 (202)
T COG1182 88 ADKVVIAAP---MYNFNIPAQLKAYIDHIAVAGKTFKYTENGPV------GLLTGKKVLI-----------------LTS 141 (202)
T ss_pred cCeEEEEec---ccccCCCHHHHHHHHHHhcCCceEEeccCCcc------cccCCceEEE-----------------EEC
Confidence 577777433 45566678999999999999999998888654 8999988611 122
Q ss_pred eCCEEeCCCCCChHHHHHHHHHHHhC
Q 012037 227 SGEVTTSRGPGTSFEFALCLVEQLFG 252 (472)
Q Consensus 227 Dg~iiTa~g~~~~~dlal~li~~~~g 252 (472)
-|++++.+ +. .+++...-++.++|
T Consensus 142 rGG~y~~~-p~-~~~~~~~YLr~ilg 165 (202)
T COG1182 142 RGGIYSEG-PA-SMDHGEPYLRTILG 165 (202)
T ss_pred CCCcCCCC-cc-chhhhHHHHHHHhh
Confidence 46666554 33 37777777766554
No 407
>PRK13055 putative lipid kinase; Reviewed
Probab=26.09 E-value=2.1e+02 Score=28.61 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCc----HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 84 PKKVLVPVGFGTE----EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 84 ~~kV~ill~~g~~----~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
|+|+.|++.+..- ...+..+...|+++|+++++.-.+.. +- +...+..+. ....+|.|++.||.
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~-~~---~a~~~~~~~-----~~~~~d~vvv~GGD 69 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPE-PN---SAKNEAKRA-----AEAGFDLIIAAGGD 69 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecC-Cc---cHHHHHHHH-----hhcCCCEEEEECCC
Confidence 5789998877422 23345677888899988876543311 00 001111111 11258999999993
No 408
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=26.05 E-value=1.2e+02 Score=29.14 Aligned_cols=90 Identities=20% Similarity=0.111 Sum_probs=49.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceee-eCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLV-ADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~-~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
.+++.++.-++....--..+.+.|+.+|+++.++-...+.+ .+. .......+...++|+++-.||
T Consensus 19 ~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~ii~vGg------- 84 (250)
T PF13685_consen 19 LKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDA-------DEDEVEKLVEALRPKDADLIIGVGG------- 84 (250)
T ss_dssp -SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE----------BHHHHHHHHTTS--TT--EEEEEES-------
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCC-------CHHHHHHHHHHhcccCCCEEEEeCC-------
Confidence 35888888888776666778899999999998765221111 111 111222333357888887777
Q ss_pred cCChHHHHHHHH-HHhcCCeEEEEchhhH
Q 012037 163 RDCEILKKITSK-QAEEKRLYGAICAAPA 190 (472)
Q Consensus 163 ~~~~~~~~~l~~-~~~~~k~I~aic~g~~ 190 (472)
..+.+.-|. .++.++++.+++++++
T Consensus 85 ---G~i~D~~K~~A~~~~~p~isVPTa~S 110 (250)
T PF13685_consen 85 ---GTIIDIAKYAAFELGIPFISVPTAAS 110 (250)
T ss_dssp ---HHHHHHHHHHHHHHT--EEEEES--S
T ss_pred ---cHHHHHHHHHHHhcCCCEEEeccccc
Confidence 233334442 4677999999999643
No 409
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=25.84 E-value=1.6e+02 Score=29.81 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=51.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
+|+.|+.-.++...-...+.+.|+.+|+++.++--.++++-.+.+...-..+ .+.+...+.-|.|+--|| +..
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~-~~~~~~~dr~~~IIAvGG-Gsv----- 96 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVE-RALALGATRRSVIVALGG-GVV----- 96 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHH-HHHHcCCCCCcEEEEECC-cHH-----
Confidence 6777777666665544567888888888776544333311111000000000 111111112347776666 222
Q ss_pred ChHHHHHHHHHHhcCCeEEEEch
Q 012037 165 CEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
-++-.|+...|.++.+++.|.+
T Consensus 97 -~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 97 -GNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred -HHHHHHHHHHhccCCCEEEecC
Confidence 3455566666778999999998
No 410
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.82 E-value=1.5e+02 Score=25.49 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=40.7
Q ss_pred CEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 288 PRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 288 ~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
++|.+...+ ...+.....+...|+.+||++.+.+.+- +++.-.+.+...+.|+|.+-.-
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v------------p~e~i~~~a~~~~~d~V~lS~~ 63 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT------------SQEEFIDAAIETDADAILVSSL 63 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEcCc
Confidence 456555554 5788899999999999999998775543 2333333343467888888653
No 411
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=25.73 E-value=3.4e+02 Score=26.45 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=49.5
Q ss_pred EEEEEeCCCCCH--HHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 289 RVLIPIANGSEE--IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 289 ~V~il~~~g~~~--~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
+|+++.-+.... .........+...++++.+...... ..... ....+...+.+|++++.||.+
T Consensus 2 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~--------~~~~~~~~~~~d~ivvlGGDG------ 66 (281)
T COG0061 2 KVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAE-ELKDF--------ADYVDDDEEKADLIVVLGGDG------ 66 (281)
T ss_pred eEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhh-hcccc--------cccccccccCceEEEEeCCcH------
Confidence 456655554432 2223344445555566654433322 11111 122222236789999988852
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
-++...+.+.+.+.+|.+|..|..
T Consensus 67 ---tlL~~~~~~~~~~~pilgin~G~l 90 (281)
T COG0061 67 ---TLLRAARLLARLDIPVLGINLGHL 90 (281)
T ss_pred ---HHHHHHHHhccCCCCEEEEeCCCc
Confidence 467777888888889999999953
No 412
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=25.70 E-value=2.6e+02 Score=28.29 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=32.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEec
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVE 323 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~ 323 (472)
.-+||+|+-.+|+-+..--...+-|+.++.++++...+
T Consensus 137 ~~~ri~vvGieg~~DFqp~l~Aa~L~~a~~~~~t~~l~ 174 (421)
T COG3075 137 PAKRIAVVGIEGLHDFQPQLAAANLRQAGLPVTTAELN 174 (421)
T ss_pred CchheEEEeeccccccCHHHHHHHHHHcCCcceecccc
Confidence 45899999999999999999999999999776665443
No 413
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=25.55 E-value=1.9e+02 Score=27.92 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC
Q 012037 285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS 325 (472)
Q Consensus 285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~ 325 (472)
++.|||++--=||+..--+..+++.|+..+ +|.++.++.+
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 345688887778999999999999999887 8999999875
No 414
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=25.17 E-value=1.9e+02 Score=25.15 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeC
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVE 120 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~ 120 (472)
..+|+.|++.||....+.......+++.|..+..++..
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g 139 (164)
T cd01472 102 GVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVK 139 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECC
Confidence 45789999999987777767777888889888888765
No 415
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=25.04 E-value=1.1e+02 Score=27.74 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=28.8
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEch
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
.++|+++|-|... .+....++.+.++..+-|+|+++++
T Consensus 74 R~ADillVeG~VT-----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 74 RQADLLMVVGTVN-----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred cceeEEEEEecCC-----ccchHHHHHHHHHcccCCEEEEecc
Confidence 6789999998642 2345677888888889999988853
No 416
>PLN02712 arogenate dehydrogenase
Probab=24.96 E-value=2.5e+02 Score=31.27 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
+.++|+|+ |+-.+.- .+...|...|++|..+..+.........|.... ..+++....+.|+||+.-=.
T Consensus 368 ~~~kIgII---GlG~mG~-slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~--~~~~el~~~~aDvVILavP~------ 435 (667)
T PLN02712 368 SKLKIAIV---GFGNFGQ-FLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYF--SDADDLCEEHPEVILLCTSI------ 435 (667)
T ss_pred CCCEEEEE---ecCHHHH-HHHHHHHHCcCEEEEEECChHHHHHHHcCCeEe--CCHHHHHhcCCCEEEECCCh------
Confidence 45789998 4444444 344566777888877765532011112354322 23333211247998886311
Q ss_pred cccHHHHHHHHH-HHHcCCeEEEEchh
Q 012037 366 QKSRILKKLLKE-QKVAGRIYGAVCSS 391 (472)
Q Consensus 366 ~~~~~l~~~L~~-~~~~g~~v~aic~G 391 (472)
.....+++-+.. ..+.+.+|.-++++
T Consensus 436 ~~~~~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 436 LSTEKVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEECCCc
Confidence 122333333332 23457788888776
No 417
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.68 E-value=99 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=38.5
Q ss_pred CcEEEEEeCC-CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 84 PKKVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 84 ~~kV~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
..||.+...+ +........+...|+..||++..++.+- + ++.-.+.+....+|+|.+-.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~--p----------~~~l~~~~~~~~~d~v~lS~ 141 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV--P----------PEEFVEAVKEHKPDILGLSA 141 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC--C----------HHHHHHHHHHcCCCEEEEec
Confidence 4577666666 4667778889999999999997776442 2 11122222334688888854
No 418
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.59 E-value=3.9e+02 Score=23.74 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=63.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcce----------eccCCceeeeCCCcCCCC--CCcccE
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEV----------EASSGTRLVADTSISNCS--HQVFDL 149 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v----------~~~~G~~v~~d~~~~~~~--~~~~D~ 149 (472)
...++|.||+.+|-+..+-......|...|++|.++-....... -...|..+.......+.. ...+|+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dl 102 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADL 102 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccE
Confidence 44689999999999999999999999999999999443321111 112344444332222211 114666
Q ss_pred EEEc-CCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037 150 IALP-GGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199 (472)
Q Consensus 150 vivp-GG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL 199 (472)
||=. =|. +... .-.+.+.++++...+...++.||-- |+=+=+..|-.
T Consensus 103 IIDal~G~-G~~~-~l~~~~~~~i~~iN~~~~~viAiDi-PSGl~~dtG~~ 150 (169)
T PF03853_consen 103 IIDALFGT-GFSG-PLRGPIAELIDWINASRAPVIAIDI-PSGLDADTGEV 150 (169)
T ss_dssp EEEES-ST-TGGS-CGSTCHHHHHHHHHHHCSEEEEESS--TTCBTTTB-B
T ss_pred EEEecccC-CCCC-CcCHHHHHHHHHHhccCCcEEEecC-CCCccCCCCCc
Confidence 5522 011 1111 1223455566666666889999987 66444444543
No 419
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=24.54 E-value=1.2e+02 Score=27.71 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=30.9
Q ss_pred CCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 143 ~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
++.++|+++|-|.. . .+....++.+.++..+-|.|+|+++
T Consensus 72 sPR~ADillVeG~V--T---~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTV--N---CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecC--C---ccchHHHHHHHHHcccCCEEEEecc
Confidence 34589999998873 1 2345678888889999999999965
No 420
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.49 E-value=3.8e+02 Score=29.13 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=54.3
Q ss_pred CCCEEEEEeCCCC-CHHHHH-HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGS-EEIEIV-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~-~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
+++||+|+.-++- ...++. .+.+.|...++++.+-..... .+.... ... .+ ...+. .+.|++|+.||.+
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~-~~~~~~-~~~-~~-~~~~~--~~~dlvi~lGGDG--- 359 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYN-KLKNRL-NEE-CN-LIDDI--EEISHIISIGGDG--- 359 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhh-hhcccc-ccc-cc-ccccc--cCCCEEEEECCcH---
Confidence 5578999877654 333333 456667777887766433221 111000 000 00 01122 3579999999963
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
.++...+.+...+.+|.+|..|..
T Consensus 360 ------T~L~aa~~~~~~~~PilGin~G~l 383 (569)
T PRK14076 360 ------TVLRASKLVNGEEIPIICINMGTV 383 (569)
T ss_pred ------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 456666777777899999999874
No 421
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.21 E-value=1.2e+02 Score=28.51 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=22.3
Q ss_pred EEEEEeC---CCCCHHHHHHHHHHHHhCCCeEEEEEe
Q 012037 289 RVLIPIA---NGSEEIEIVTIVDILRRAKVDVVVASV 322 (472)
Q Consensus 289 ~V~il~~---~g~~~~e~~~~~d~l~~a~~~v~~vs~ 322 (472)
+|++++. +.|...-+.++.+.++..||++.++..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDA 37 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3666665 334444456777788888888877644
No 422
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.90 E-value=1.6e+02 Score=26.99 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=48.0
Q ss_pred cEEEEEeCC-CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 85 KKVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 85 ~kV~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.||.+...+ +........+...|+.+||++..++.+- |. +.-.+.+....+|+|.+-.-. ..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v--p~----------e~~v~~~~~~~pd~v~lS~~~--~~--- 147 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV--PI----------DTVVEKVKKEKPLMLTGSALM--TT--- 147 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC--CH----------HHHHHHHHHcCCCEEEEcccc--cc---
Confidence 456555554 5888888999999999999999988663 22 111122223368888885432 11
Q ss_pred CChHHHHHHHHHHhcC
Q 012037 164 DCEILKKITSKQAEEK 179 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~ 179 (472)
..+.+.++++...+.+
T Consensus 148 ~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 148 TMYGQKDINDKLKEEG 163 (197)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 2244555555555553
No 423
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.78 E-value=99 Score=25.51 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=33.5
Q ss_pred eCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 91 VGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 91 l~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
+..+.....+..+...|+..||++...+..- + ++...+.+...++|+|.+-.-
T Consensus 7 ~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~--~----------~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 7 VGGDGHDIGKNIVARALRDAGFEVIDLGVDV--P----------PEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred eCCchhhHHHHHHHHHHHHCCCEEEECCCCC--C----------HHHHHHHHHHcCCCEEEEecc
Confidence 3445677888889999999999997766432 2 111112222336898888554
No 424
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.73 E-value=4.1e+02 Score=25.73 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCEEEEEeCCCCCHHHHHH-HHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIANGSEEIEIVT-IVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~-~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
|.+|+++.-+.-...++.. +.+.|+..|+++..- . .+.|++++.||.+
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~------------------------~--~~~D~vi~lGGDG----- 50 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH------------------------P--KNANIIVSIGGDG----- 50 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC------------------------C--CCccEEEEECCcH-----
Confidence 3467777665444444443 334566777665411 1 2468999999863
Q ss_pred cccHHHHHHHHHHHHc-CCeEEEEch-hH
Q 012037 366 QKSRILKKLLKEQKVA-GRIYGAVCS-SP 392 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~-g~~v~aic~-G~ 392 (472)
.+++.++++... ..+|.+|.. |.
T Consensus 51 ----T~L~a~~~~~~~~~~pilgIn~~G~ 75 (264)
T PRK03501 51 ----TFLQAVRKTGFREDCLYAGISTKDQ 75 (264)
T ss_pred ----HHHHHHHHhcccCCCeEEeEecCCC
Confidence 345566665443 668888888 74
No 425
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.68 E-value=1.6e+02 Score=24.24 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=30.9
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
.+-|++|+..-.+ +++++++.++...++|..+.+|+...
T Consensus 45 ~~~d~~I~iS~sG------~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSG------ETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCc------CCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4568888877542 56789999999999999999998753
No 426
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.59 E-value=1.2e+02 Score=29.20 Aligned_cols=85 Identities=15% Similarity=0.062 Sum_probs=50.2
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 86 KVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 86 kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
.|+|++.+ .|...-+.++.+.+++.|+++.+.....+ +-. ....+.......+|++++-+..
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~--------~~~~i~~~~~~~vdgiii~~~~------ 65 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGD-PAK--------QISQIENMIAKGVDVLVIAPVD------ 65 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHH--------HHHHHHHHHHcCCCEEEEecCC------
Confidence 37788754 45555566778888888999988765432 110 0011111112358999885431
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEch
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+++++..+.+.++..+..
T Consensus 66 --~~~~~~~l~~l~~~~ipvV~~~~ 88 (288)
T cd01538 66 --GEALASAVEKAADAGIPVIAYDR 88 (288)
T ss_pred --hhhHHHHHHHHHHCCCCEEEECC
Confidence 12234567776777888887754
No 427
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=23.53 E-value=1.1e+02 Score=27.81 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 143 SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 143 ~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.+.+.|+++|-|.. . .+....++.+.++..+.|+|+|+++
T Consensus 71 sPr~aDvllV~G~v--t---~~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTL--T---NKMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCC--C---ccchHHHHHHHHHcCcCCeEEEEec
Confidence 34579999999873 1 1345666667777778999999965
No 428
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.45 E-value=1.6e+02 Score=24.30 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 295 ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 295 ~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
......+.+..+...|+..||++...... +.++...+.+...++|+|.+...
T Consensus 8 ~~e~H~lG~~~~~~~l~~~G~~V~~lg~~------------~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 8 GGDGHDIGKNIVARALRDAGFEVIDLGVD------------VPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred CCchhhHHHHHHHHHHHHCCCEEEECCCC------------CCHHHHHHHHHHcCCCEEEEecc
Confidence 34577888899999999999999655422 11222223333367898888764
No 429
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=23.36 E-value=2.3e+02 Score=32.33 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=63.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-----
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG----- 158 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~----- 158 (472)
..||+||-.+|++.. ..+...|.++||+..=|..++ . +.-+ ...++|-.|+.+||+.-
T Consensus 1058 ~PkVAilREeGvNg~--rEMa~af~~AgF~~~DVtmtD--l--------L~G~-----~~ld~frGlaf~GGFSYaDvLg 1120 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGD--REMAAAFYAAGFETVDVTMTD--L--------LAGR-----HHLDDFRGLAFCGGFSYADVLG 1120 (1320)
T ss_pred CCceEEeeccccccH--HHHHHHHHHcCCceeeeeeeh--h--------hcCc-----eeHhHhcceeeecCcchHhhhc
Confidence 459999999998743 356778999999866555442 1 1111 22236778888888621
Q ss_pred -----cccccCChHHHHHHHHHHhcCCe-EEEEchhhHHhhhcCCCC
Q 012037 159 -----SVRLRDCEILKKITSKQAEEKRL-YGAICAAPAVTLLPWGLL 199 (472)
Q Consensus 159 -----~~~l~~~~~~~~~l~~~~~~~k~-I~aic~g~~~lLa~aGlL 199 (472)
.....-++.++.-..+++++..+ =.+||+| .-+++..|-+
T Consensus 1121 SakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNG-CQlms~Lg~i 1166 (1320)
T KOG1907|consen 1121 SAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNG-CQLMSRLGWI 1166 (1320)
T ss_pred cccchhhheeeChhHHHHHHHHhcCCCceeeecccH-hHHHHHhccc
Confidence 11234467777666667665544 5689996 5589998865
No 430
>PLN02727 NAD kinase
Probab=23.25 E-value=4.1e+02 Score=30.62 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCCCcEEEEEeCCCCcHHHH-HHHHHHHHhC-CCEEEEEeeCCCcceeccCCce-eee--CCCcCCCCCCcccEEEEcCC
Q 012037 81 AVPPKKVLVPVGFGTEEMEA-VIIVDVLRRA-GAQVTMASVEPQLEVEASSGTR-LVA--DTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~~~e~-~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~-v~~--d~~~~~~~~~~~D~vivpGG 155 (472)
..++++|+|+.-.+-...+. ..+.+.|... |++|.+-..... ......+.. ... .....+.. ...|++|+-||
T Consensus 675 ~~p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~-~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGG 752 (986)
T PLN02727 675 KSTPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHD-IFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGG 752 (986)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHH-Hhhccccccccceecccchhhcc-cCCCEEEEECC
Confidence 34578999998876433332 3356666665 777654322111 110111110 000 01111221 25899999999
Q ss_pred ccccccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
|..++...+.+.....+|.+|-.|
T Consensus 753 ---------DGTlLrAar~~~~~~iPILGINlG 776 (986)
T PLN02727 753 ---------DGVILHASNLFRGAVPPVVSFNLG 776 (986)
T ss_pred ---------cHHHHHHHHHhcCCCCCEEEEeCC
Confidence 466777788777888999999885
No 431
>PRK06242 flavodoxin; Provisional
Probab=23.08 E-value=1.2e+02 Score=26.00 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=29.8
Q ss_pred CcccEEEEcCCccccccccCChHHHHHHHHHHh-cCCeEEEEchhhH
Q 012037 145 QVFDLIALPGGMPGSVRLRDCEILKKITSKQAE-EKRLYGAICAAPA 190 (472)
Q Consensus 145 ~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~-~~k~I~aic~g~~ 190 (472)
.+||.|++..- ...-.-.+.+.+||.+... ++|.++.+|+++.
T Consensus 42 ~~~d~ii~g~p---vy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 42 SEYDLIGFGSG---IYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred hHCCEEEEeCc---hhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 37999998442 2222345788899987654 7899999988654
No 432
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=23.02 E-value=1.2e+02 Score=27.59 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=27.3
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEch
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
.+.|+++|-|... .+....++.+.++..+-++|+++++
T Consensus 73 r~aDvllV~G~vt-----~~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 73 RQADLMIVAGTLT-----NKMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CceeEEEEEeCCC-----ccchHHHHHHHHHcCcCCeEEEEec
Confidence 5689999999752 1345666667777778889988753
No 433
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=22.98 E-value=1.9e+02 Score=28.62 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=55.7
Q ss_pred CCcEEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 83 PPKKVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 83 ~~~kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
+.++|++++.+ .|+..-+.++.+.+++.||.+.+...+.. + .. .. ..+.......+|++++.+..
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~-~-~~----~~---~~i~~l~~~~vDGiIi~~~~--- 91 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN-E-ET----QM---SQIENMINRGVDVLVIIPYN--- 91 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCC-H-HH----HH---HHHHHHHHcCCCEEEEeCCC---
Confidence 57899999963 46677777888888999999988765432 1 10 00 11112222369999986531
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....++++...+++-++..+..
T Consensus 92 -----~~~~~~~l~~~~~~~iPvV~id~ 114 (330)
T PRK10355 92 -----GQVLSNVIKEAKQEGIKVLAYDR 114 (330)
T ss_pred -----hhhHHHHHHHHHHCCCeEEEECC
Confidence 11234567777777888888754
No 434
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=22.92 E-value=90 Score=26.80 Aligned_cols=82 Identities=21% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHhCCCeEEEEEecCCcceecCCCcEEe---------ecCCccc--cCCCcccEEEEcCCCcchhcccccHHHHHH
Q 012037 306 IVDILRRAKVDVVVASVERSTQIVASQGVKII---------ADKSISD--AAESVYDLIILPGGVAGAERLQKSRILKKL 374 (472)
Q Consensus 306 ~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~---------~d~~l~~--~~~~~~D~livpGG~~~~~~~~~~~~l~~~ 374 (472)
....|.+++++|.+++........-..|+.+. +.....+ ....++|+|||.-=. ...+..++.
T Consensus 13 ~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa------~~~~~~l~~ 86 (151)
T PF02558_consen 13 YAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA------YQLEQALQS 86 (151)
T ss_dssp HHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG------GGHHHHHHH
T ss_pred HHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc------cchHHHHHH
Confidence 34456668999999988761011112233322 2111111 123689999997421 234567777
Q ss_pred HHHHHHcCCeEEEEchhHH
Q 012037 375 LKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 375 L~~~~~~g~~v~aic~G~~ 393 (472)
|+.+...+..|+.+.+|.-
T Consensus 87 l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 87 LKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp HCTGEETTEEEEEESSSSS
T ss_pred HhhccCCCcEEEEEeCCCC
Confidence 8888777788999998853
No 435
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=22.76 E-value=1.7e+02 Score=29.61 Aligned_cols=138 Identities=7% Similarity=0.030 Sum_probs=70.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCC-CCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCS-HQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~-~~~~D~vivpGG~~~~~~l 162 (472)
.+|+.|+.-+++...-...+.+.|...|+++..+-..++++-.+.....-..+. +.+.. ..++|+|+--|| +..
T Consensus 26 ~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~-l~~~~~~r~~d~IVaiGG-G~v--- 100 (354)
T cd08199 26 SGRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDA-LDAFGISRRREPVLAIGG-GVL--- 100 (354)
T ss_pred CCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHH-HHHcCCCCCCCEEEEECC-cHH---
Confidence 467877776666544444677888888888875443333221111111100111 11111 123488886666 222
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-CCCCCceeecCcchhccCCCCccccCcEEEeCCEEeC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-GLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTS 233 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-GlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa 233 (472)
-++-.|+...|.+|.+++.+.+- +++.. +-..+|..-.+......+. ..+....++.|-+++.+
T Consensus 101 ---~D~ak~~A~~~~rg~p~i~VPTT---~lA~vD~~~g~K~~i~~~~~kn~ig-~~~~P~~viiD~~~l~t 165 (354)
T cd08199 101 ---TDVAGLAASLYRRGTPYVRIPTT---LVGLIDAGVGIKTGVNFGGYKNRLG-AYHPPTLTLLDRSFLAT 165 (354)
T ss_pred ---HHHHHHHHHHhcCCCCEEEEcCc---cceeeecCCCCceEEeCCCCccccc-cCCCCCEEEEcHHHHhh
Confidence 35667777778889999999982 24332 1223454444432222221 11233446667665554
No 436
>PLN02929 NADH kinase
Probab=22.19 E-value=3.1e+02 Score=27.18 Aligned_cols=63 Identities=22% Similarity=0.149 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHc
Q 012037 302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA 381 (472)
Q Consensus 302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~ 381 (472)
-+-.+.+.|+..|+++..+.... +.+ ...+.|++|+.||.+ -++...+.+ ..
T Consensus 35 ~~~~~~~~L~~~gi~~~~v~r~~-----------------~~~-~~~~~Dlvi~lGGDG---------T~L~aa~~~-~~ 86 (301)
T PLN02929 35 TVNFCKDILQQKSVDWECVLRNE-----------------LSQ-PIRDVDLVVAVGGDG---------TLLQASHFL-DD 86 (301)
T ss_pred HHHHHHHHHHHcCCEEEEeeccc-----------------ccc-ccCCCCEEEEECCcH---------HHHHHHHHc-CC
Confidence 34567888999998885543211 011 114679999999963 344555555 67
Q ss_pred CCeEEEEchhH
Q 012037 382 GRIYGAVCSSP 392 (472)
Q Consensus 382 g~~v~aic~G~ 392 (472)
+.+|.+|..|+
T Consensus 87 ~iPvlGIN~Gp 97 (301)
T PLN02929 87 SIPVLGVNSDP 97 (301)
T ss_pred CCcEEEEECCC
Confidence 88999999984
No 437
>PLN02204 diacylglycerol kinase
Probab=22.06 E-value=1.4e+02 Score=32.45 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=40.8
Q ss_pred CCCCcEEEEEeCCC----CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 81 AVPPKKVLVPVGFG----TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 81 ~~~~~kV~ill~~g----~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
..++||+.|++.+- -....+-.+...|++++++++++-.+.. .+...+.. .+.+.....||.||+.||.
T Consensus 156 ~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a-----ghA~d~~~--~~~~~~l~~~D~VVaVGGD 228 (601)
T PLN02204 156 VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA-----GHAFDVMA--SISNKELKSYDGVIAVGGD 228 (601)
T ss_pred cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc-----chHHHHHH--HHhhhhccCCCEEEEEcCc
Confidence 45678999998762 2222333678889999998877654421 01111211 1112122369999999993
No 438
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=21.97 E-value=3.1e+02 Score=24.76 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=35.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeE-------------EEEEecCC-cceecCCCcEEeecCCccccCCCccc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDV-------------VVASVERS-TQIVASQGVKIIADKSISDAAESVYD 351 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v-------------~~vs~~~~-~~v~s~~G~~v~~d~~l~~~~~~~~D 351 (472)
..++|++.+.-+ .+.+...+++.+...|.+| ++...+.. .-..+..|+.-+...........+.|
T Consensus 33 ~a~~I~~Y~~~~-~Evdt~~li~~~~~~gk~v~lP~v~~~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~iD 111 (182)
T PRK10333 33 MAHTVAVFLSFD-GELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVRDVLPLSRLD 111 (182)
T ss_pred cCCEEEEEcCCC-CCcCHHHHHHHHHHCCCEEEEeEEecCCCCEEEEEECCCCCccccCCCCCCCCCccccccCCcccCC
Confidence 345677776654 4556666666666665322 22222111 02334455543321111112236679
Q ss_pred EEEEcC
Q 012037 352 LIILPG 357 (472)
Q Consensus 352 ~livpG 357 (472)
++||||
T Consensus 112 lviVP~ 117 (182)
T PRK10333 112 VLITPL 117 (182)
T ss_pred EEEeCc
Confidence 999998
No 439
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.80 E-value=1.4e+02 Score=28.16 Aligned_cols=86 Identities=13% Similarity=-0.015 Sum_probs=47.9
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeC-CCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 86 KVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVE-PQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 86 kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~-~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
||+|++.+ .|...-..++.+.+++.||.+.+.... .+.+- . .. ..+.......+|++|+.+..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~----~-~~---~~i~~l~~~~vdgvii~~~~----- 67 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVA----G-QV---NLLENAIARGPDAILLAPTD----- 67 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHH----H-HH---HHHHHHHHhCCCEEEEcCCC-----
Confidence 68888854 244444556677788889999887542 11010 0 00 01111112258999985541
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.++...+.+.++..+..
T Consensus 68 ---~~~~~~~l~~~~~~~ipvV~~~~ 90 (273)
T cd06310 68 ---AKALVPPLKEAKDAGIPVVLIDS 90 (273)
T ss_pred ---hhhhHHHHHHHHHCCCCEEEecC
Confidence 12233456666677888887754
No 440
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.60 E-value=2.5e+02 Score=27.56 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=49.9
Q ss_pred CCCEEEEEeCCCC---C-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 286 RMPRVLIPIANGS---E-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 286 ~~~~V~il~~~g~---~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
.|+|+.+++=|.. . .-.+....+.|+..++++.++..+.... +.....++....+|.|++.||.+
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~----------~~~~a~~~~~~~~d~vvv~GGDG- 75 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHD----------ARHLVAAALAKGTDALVVVGGDG- 75 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHH----------HHHHHHHHHhcCCCEEEEECCch-
Confidence 4577777665532 2 2234456788999998887655543200 01111122225679999999873
Q ss_pred hhcccccHHHHHHHHHHHHcCCeEEEEchhHH-HHHH
Q 012037 362 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPI-VLHK 397 (472)
Q Consensus 362 ~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~-lLA~ 397 (472)
..+ +.+......+.+++-|=.|+. .+|+
T Consensus 76 Ti~--------evv~~l~~~~~~lgiiP~GT~NdfAr 104 (306)
T PRK11914 76 VIS--------NALQVLAGTDIPLGIIPAGTGNDHAR 104 (306)
T ss_pred HHH--------HHhHHhccCCCcEEEEeCCCcchhHH
Confidence 221 222333344566776666663 4443
No 441
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=21.57 E-value=3.1e+02 Score=27.92 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=73.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
...|+.|+..+.....=+....+.|...|+.+..+...+|+...+-....-.-+..++ .....=|.|+--|| +.
T Consensus 32 ~~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~-~~~~R~s~iialGG-Gv---- 105 (360)
T COG0337 32 AGRKVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLE-AGLDRKSTLIALGG-GV---- 105 (360)
T ss_pred cCCeEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHH-cCCCCCcEEEEECC-hH----
Confidence 3459999999998888777888899999999855555545454443222111111111 12224556665566 22
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-CCCCceeecCc
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHP 208 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-lL~g~~~T~~~ 208 (472)
-.++.-|+...|.+|-.+.-|-+ + +||+-- -.-||+.--|+
T Consensus 106 --igDlaGF~Aaty~RGv~fiqiPT--T-LLAqVDSSVGGKtgIN~~ 147 (360)
T COG0337 106 --IGDLAGFAAATYMRGVRFIQIPT--T-LLAQVDSSVGGKTGINHP 147 (360)
T ss_pred --HHHHHHHHHHHHHcCCCeEeccc--h-HHHHhhcccccccccCCC
Confidence 25788999999999999999988 4 788732 34565544344
No 442
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=21.56 E-value=1.1e+02 Score=27.21 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=38.8
Q ss_pred CCcEEEEEeCCC---CcHHHHHHHHHHHHhCCC---EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 83 PPKKVLVPVGFG---TEEMEAVIIVDVLRRAGA---QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 83 ~~~kV~ill~~g---~~~~e~~~~~~~l~~ag~---~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
...||+|+...- ....-+.+..+.|.+.|. +++++..-+- . -+.+.+..... ..+||++|..|-
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA--~----EiP~~a~~l~~---~~~yDaiIaLG~ 78 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGA--F----EIPLHAQTLAK---TGRYAAIVAAAL 78 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH--H----HHHHHHHHHHh---cCCCCEEEEEEE
Confidence 356999999763 445556778889998883 4666655531 1 11222222221 236999998874
No 443
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=21.41 E-value=2.2e+02 Score=30.23 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=37.9
Q ss_pred CCCCEEEEEeCC--CC-CHHHH-H-HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 285 DRMPRVLIPIAN--GS-EEIEI-V-TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 285 ~~~~~V~il~~~--g~-~~~e~-~-~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
.+++|+.|++=| |- ..... . .+...|+.++++++++-.+.. .+...+. .++....||.|++.||.
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-----ghA~~la-----~~~~~~~~D~VV~vGGD 178 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-----LHAKEVV-----RTMDLSKYDGIVCVSGD 178 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc-----cHHHHHH-----HHhhhcCCCEEEEEcCC
Confidence 467888887665 22 22233 2 355689999988876644431 0111111 11222569999999997
Q ss_pred c
Q 012037 360 A 360 (472)
Q Consensus 360 ~ 360 (472)
+
T Consensus 179 G 179 (481)
T PLN02958 179 G 179 (481)
T ss_pred C
Confidence 4
No 444
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=21.31 E-value=7.1e+02 Score=25.08 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=50.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+|+.|+.-++....-.-.+.+.|...|+++.++...++.+-.+...+.--. ..+.+.+..+.|.|+-.||- ...
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~-~~~~~~~~~r~d~IIavGGG-sv~---- 105 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIY-DALLEAGLDRSDTLIALGGG-VIG---- 105 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHH-HHHHHcCCCCCCEEEEEcCc-HHH----
Confidence 577777766665554555667788888877654333320100000000000 01111122356999877773 122
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
++-+++...+.++.++++|-|-.
T Consensus 106 --D~aK~iA~~~~~gip~i~IPTT~ 128 (358)
T PRK00002 106 --DLAGFAAATYMRGIRFIQVPTTL 128 (358)
T ss_pred --HHHHHHHHHhcCCCCEEEcCchh
Confidence 33455554566788888888764
No 445
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.29 E-value=5.6e+02 Score=24.58 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=44.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
||++|.--+. .......+.+.|.+.|+.+.... + . . . ...+.|++++-||.
T Consensus 1 m~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~-~-~---------------~--~~~~~d~vi~iGGD-------- 51 (256)
T PRK14075 1 MKLGIFYREE-KEKEAKFLKEKISKEHEVVEFCE-A-S-A---------------S--GKVTADLIIVVGGD-------- 51 (256)
T ss_pred CEEEEEeCcc-HHHHHHHHHHHHHHcCCeeEeec-c-c-c---------------c--ccCCCCEEEEECCc--------
Confidence 5677774444 55566677788888887654321 1 1 0 0 11257999999993
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchh
Q 012037 165 CEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
..+++.++.. +++|.+|-.|
T Consensus 52 -GT~L~a~~~~---~~Pilgin~G 71 (256)
T PRK14075 52 -GTVLKAAKKV---GTPLVGFKAG 71 (256)
T ss_pred -HHHHHHHHHc---CCCEEEEeCC
Confidence 4455555544 8899998875
No 446
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=21.27 E-value=5.2e+02 Score=27.62 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCEEEEEeCCCC-CHHHHH-HHHHHHH-hCCCeEEEEEecCCcceecC---CCc-EEeec-CCccccCCCcccEEEEcC
Q 012037 286 RMPRVLIPIANGS-EEIEIV-TIVDILR-RAKVDVVVASVERSTQIVAS---QGV-KIIAD-KSISDAAESVYDLIILPG 357 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~-~~~d~l~-~a~~~v~~vs~~~~~~v~s~---~G~-~v~~d-~~l~~~~~~~~D~livpG 357 (472)
.+++|+|+.-++- ...++. .+.+.|. ..|+++.+-..... ..... .+. .++.+ ..+.++. .++|++|+.|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~-~l~~~~~~~~~~~~~~~~~~~~~l~-~~~DlVIsiG 270 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKK-ELLSESSYFNFVQTWEDEKEILLLH-TKVDLVITLG 270 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhh-hhccccccccccccccccchhhhcc-cCCCEEEEEC
Confidence 3678999887755 333333 3455566 46677765432211 11100 010 01011 1111121 3589999999
Q ss_pred CCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHH
Q 012037 358 GVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPI 393 (472)
Q Consensus 358 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~ 393 (472)
|.+ -++...+.+...+.+|.+|..|..
T Consensus 271 GDG---------TlL~Aar~~~~~~iPILGIN~G~L 297 (508)
T PLN02935 271 GDG---------TVLWAASMFKGPVPPVVPFSMGSL 297 (508)
T ss_pred CcH---------HHHHHHHHhccCCCcEEEEeCCCc
Confidence 963 355666766677789999998864
No 447
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=21.17 E-value=6.4e+02 Score=25.36 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecC--CcceecCCC--cEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER--STQIVASQG--VKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~--~~~v~s~~G--~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
+.+||+|+-..|+--.|+.-.++--....+++..++.+. |..+. ..| +.+. .+++....+.|++|+..++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~~~~~v~---~~~~~~~~~~Dvvf~a~p~~- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGGKSVTVQ---DAAEFDWSQAQLAFFVAGRE- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECCcceEEE---eCchhhccCCCEEEECCCHH-
Confidence 457999999999999888765554222557777775542 22333 222 3333 23333225689999987542
Q ss_pred hhcccccHHHHHHHHHHHHcCCeEEEE
Q 012037 362 AERLQKSRILKKLLKEQKVAGRIYGAV 388 (472)
Q Consensus 362 ~~~~~~~~~l~~~L~~~~~~g~~v~ai 388 (472)
...+|..++.++|..|+-.
T Consensus 78 --------~s~~~~~~~~~~g~~VIDl 96 (336)
T PRK08040 78 --------ASAAYAEEATNAGCLVIDS 96 (336)
T ss_pred --------HHHHHHHHHHHCCCEEEEC
Confidence 3346666666666655433
No 448
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=21.09 E-value=3e+02 Score=27.45 Aligned_cols=73 Identities=19% Similarity=0.043 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCc-EEEe--CCE-Ee--CCCCCCh
Q 012037 166 EILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSN-IHVS--GEV-TT--SRGPGTS 239 (472)
Q Consensus 166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~-~v~D--g~i-iT--a~g~~~~ 239 (472)
..+.+|+++.+++.+.+..||+.|..+=.-+.+|++|. .|.. +|+| |++ |. ++-.+.+
T Consensus 39 ~~~~~~~~~~f~~~d~iIfI~A~GIaVR~IAP~l~dK~----------------~DPaVvvvDe~G~~vIsLLsGH~GGA 102 (315)
T PRK05788 39 EGFADAFEEAFGCYDALIFIMATGIAVRVIAPLLKDKW----------------SDPAVVVVDEKGKFVISLLSGHHGGA 102 (315)
T ss_pred CCHHHHHHHHHhcCCeEEEEEChHHHHHHhchhhhccC----------------cCCCEEEEeCCCCEEEEcccCCcccH
Confidence 45788999999999999999998877767778887765 3433 4445 343 32 3333457
Q ss_pred HHHHHHHHHHHhCch
Q 012037 240 FEFALCLVEQLFGES 254 (472)
Q Consensus 240 ~dlal~li~~~~g~~ 254 (472)
.+++..+-+.+-+..
T Consensus 103 N~LA~~iA~~lga~p 117 (315)
T PRK05788 103 NELARDLAKILGAVP 117 (315)
T ss_pred HHHHHHHHHHhCCEE
Confidence 888777776665443
No 449
>PRK13054 lipid kinase; Reviewed
Probab=21.04 E-value=3.8e+02 Score=26.21 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCCEEEEEeCCCC-CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCc
Q 012037 286 RMPRVLIPIANGS-EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 286 ~~~~V~il~~~g~-~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
+|+|+.+++=+.. ..-.+......|+.+++++++........ . .....+.....+|.|++.||.+
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~-----a-----~~~a~~~~~~~~d~vvv~GGDG 67 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGD-----A-----ARYVEEALALGVATVIAGGGDG 67 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCc-----H-----HHHHHHHHHcCCCEEEEECCcc
Confidence 3556665444333 23445566777888998877644332100 0 0011111124578999999863
No 450
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=20.82 E-value=2.5e+02 Score=27.09 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=32.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCC
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ 122 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g 122 (472)
.|||.|-=-||+....+..+++.|++.| +|.+++|+..
T Consensus 5 ~M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 5 KPHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 3577766667999999999999999987 8999999865
No 451
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.71 E-value=5.2e+02 Score=22.47 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=54.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEee--CCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASV--EPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~--~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
..|+|+++=...--.-.-..+...|.++||++--|.| .++ .+- |.+. =.++.+++ ...|.|-|
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~-eiL---G~k~--y~sL~dIp-e~IDiVdv-------- 79 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGE-EIL---GEKV--YPSLADIP-EPIDIVDV-------- 79 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchH-Hhc---Cchh--hhcHHhCC-CCCcEEEE--------
Confidence 3678999877665556666788889999999999988 432 332 3332 23555655 56888776
Q ss_pred cccCChHHHHHHHHHHhcC
Q 012037 161 RLRDCEILKKITSKQAEEK 179 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~ 179 (472)
.+..+.+.+.++++.+.+
T Consensus 80 -FR~~e~~~~i~~eal~~~ 97 (140)
T COG1832 80 -FRRSEAAPEVAREALEKG 97 (140)
T ss_pred -ecChhhhHHHHHHHHhhC
Confidence 334566777788777766
No 452
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=20.71 E-value=3.6e+02 Score=26.74 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEe---------------ecCCccccCCCcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKII---------------ADKSISDAAESVY 350 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~---------------~d~~l~~~~~~~~ 350 (472)
+|+||+|+ |.-.+-... ...|..+|++|.++..+.........|+.+. .....+.. .++
T Consensus 1 ~~mkI~Ii---G~G~mG~~~-A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 74 (341)
T PRK08229 1 MMARICVL---GAGSIGCYL-GGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAAL--ATA 74 (341)
T ss_pred CCceEEEE---CCCHHHHHH-HHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhc--cCC
Confidence 35778877 444444333 3345667888888876431001112333321 11122222 578
Q ss_pred cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 351 D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
|+||+.--.. ..+++.+.|......+..|..+.+|.
T Consensus 75 D~vil~vk~~------~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 75 DLVLVTVKSA------ATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred CEEEEEecCc------chHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 9998865321 12345555665556667777776664
No 453
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=20.59 E-value=2.7e+02 Score=28.27 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=49.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+|+.|+.-++....-.-.+.+.|...|+++.++...++.+-.+...+.-..+ .+.+.+.+.-|.||-.||- ...
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~-~~~~~~~dr~~~IIAvGGG-sv~---- 97 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVE-RALALGATRRSVIVALGGG-VVG---- 97 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHH-HHHHcCCCCCcEEEEECCc-HHH----
Confidence 5676666556665544567788988888876554443211101000000000 1111111233478766663 122
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchh
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
++-+++...+.+|.+++.|.|.
T Consensus 98 --D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 98 --NIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred --HHHHHHHHHhccCCCEEEecCc
Confidence 3444555455578899999984
No 454
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.58 E-value=2e+02 Score=21.58 Aligned_cols=36 Identities=19% Similarity=0.055 Sum_probs=28.0
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEc
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVC 389 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic 389 (472)
++-|++++..-.+ ..+++.+.+++..++|..+.+++
T Consensus 46 ~~~d~~i~iS~sg------~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSG------RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCC------CCHHHHHHHHHHHHcCCeEEEEe
Confidence 3457777776442 46788999999999999999998
No 455
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=20.52 E-value=1.9e+02 Score=29.09 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=51.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
+|+.|+.-+++...-...+.+.|++.|.++.++-..++++-.+..... ..-..+.+......|.|+--|| +..
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~-~~~~~~~~~~~~r~d~IIavGG-Gsv----- 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQ-RLYDQLLEAGLDRSSTIIALGG-GVV----- 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHH-HHHHHHHHcCCCCCCEEEEEcC-hHH-----
Confidence 688888766665554445667788888776543333331111110000 0000111112224688887776 222
Q ss_pred ChHHHHHHHHHHhcCCeEEEEch
Q 012037 165 CEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
-++-.++...+.++.++++|.+
T Consensus 94 -~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 94 -GDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred -HHHHHHHHHHHccCCCEEEecC
Confidence 2444566666778999999998
No 456
>PRK06242 flavodoxin; Provisional
Probab=20.34 E-value=1.6e+02 Score=25.29 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=29.0
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHH-cCCeEEEEchhHH
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKV-AGRIYGAVCSSPI 393 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~-~g~~v~aic~G~~ 393 (472)
.++|.|++..-. ..-.-.+.+.+||.+... +++.++.+|++.+
T Consensus 42 ~~~d~ii~g~pv---y~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 42 SEYDLIGFGSGI---YFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred hHCCEEEEeCch---hcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 679988886521 222345678888887644 6888888887654
No 457
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.29 E-value=3.2e+02 Score=26.42 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh--------------
Q 012037 298 SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-------------- 363 (472)
Q Consensus 298 ~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-------------- 363 (472)
..+.-..-+.+.|...|+++..+..-|..+ . .|.. .+.... ..+|+||+-||.+...
T Consensus 18 ivdtNa~~la~~L~~~G~~v~~~~~VgD~~-~-----~I~~--~l~~a~-~r~D~vI~tGGLGPT~DDiT~e~vAka~g~ 88 (255)
T COG1058 18 IVDTNAAFLADELTELGVDLARITTVGDNP-D-----RIVE--ALREAS-ERADVVITTGGLGPTHDDLTAEAVAKALGR 88 (255)
T ss_pred eecchHHHHHHHHHhcCceEEEEEecCCCH-H-----HHHH--HHHHHH-hCCCEEEECCCcCCCccHhHHHHHHHHhCC
Confidence 445566778888999998777666555410 0 0000 112222 4499999999975322
Q ss_pred cccccHHHHHHHHHHHHc
Q 012037 364 RLQKSRILKKLLKEQKVA 381 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~ 381 (472)
.+..+++.+++|++++.+
T Consensus 89 ~lv~~~~al~~i~~~~~~ 106 (255)
T COG1058 89 PLVLDEEALAMIEEKYAK 106 (255)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 135578889999887653
No 458
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=20.24 E-value=62 Score=24.15 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=13.9
Q ss_pred HHHhcCCeEEEEchhhH
Q 012037 174 KQAEEKRLYGAICAAPA 190 (472)
Q Consensus 174 ~~~~~~k~I~aic~g~~ 190 (472)
+.+++||.|.|+|.|-.
T Consensus 41 ~~Fr~GKsIiAVleGe~ 57 (71)
T PF09558_consen 41 QSFRRGKSIIAVLEGEC 57 (71)
T ss_pred HHHcCCceEEEEEcCce
Confidence 45789999999999743
No 459
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.15 E-value=4.2e+02 Score=25.64 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCEEEEEeCC--CCC--HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 287 MPRVLIPIAN--GSE--EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 287 ~~~V~il~~~--g~~--~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
|+|+.+++=| |.. .-.+..+...|...++++.+...+...... . ...+....++|.|++.||.+ .
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~-----~-----~~~~~~~~~~d~ivv~GGDG-T 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAA-----R-----YVEEARKFGVDTVIAGGGDG-T 69 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHH-----H-----HHHHHHhcCCCEEEEECCCC-h
Confidence 4678877766 432 223445677888889888776655420110 0 01111114589999999973 2
Q ss_pred hcccccHHHHHHHHHHHH-cCC-eEEEEchhHH-HHHH-cCC
Q 012037 363 ERLQKSRILKKLLKEQKV-AGR-IYGAVCSSPI-VLHK-HGL 400 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~-~g~-~v~aic~G~~-lLA~-aGl 400 (472)
+.+.++.... ... +++-+-.|.. .||+ -|+
T Consensus 70 --------l~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i 103 (293)
T TIGR00147 70 --------INEVVNALIQLDDIPALGILPLGTANDFARSLGI 103 (293)
T ss_pred --------HHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCC
Confidence 2333343332 233 4555776664 5555 554
No 460
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=20.11 E-value=1.9e+02 Score=31.65 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=61.4
Q ss_pred CCcEEEEEeCCC----------------CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCc
Q 012037 83 PPKKVLVPVGFG----------------TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQV 146 (472)
Q Consensus 83 ~~~kV~ill~~g----------------~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~ 146 (472)
.+.|||||=.=| -+..++.+++|.|.-+.++|+++|-++ |. .+. + +.+
T Consensus 434 ~~~kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdD---i~--------~~g----i-~~d 497 (716)
T PF09508_consen 434 CPFKVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDD---IR--------ENG----I-LED 497 (716)
T ss_dssp -SSEEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHH---HH--------HH-----S--TT
T ss_pred ccceEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHH---Hh--------hcC----C-ccc
Confidence 367999996322 124789999999999999999999874 11 111 1 236
Q ss_pred ccEEEEcCCcccc---ccccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 147 FDLIALPGGMPGS---VRLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 147 ~D~vivpGG~~~~---~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
.|+||=.|..... -....|+.+..-||++..+|.-+++++. |+
T Consensus 498 idViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGE-Ps 543 (716)
T PF09508_consen 498 IDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGE-PS 543 (716)
T ss_dssp --EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEES-TE
T ss_pred CCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCC-Cc
Confidence 7777776532111 1255799999999999999999999998 65
No 461
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=20.06 E-value=3.3e+02 Score=28.88 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=37.0
Q ss_pred CCCcEEEEEeCCCC---cHHHH-H-HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 82 VPPKKVLVPVGFGT---EEMEA-V-IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 82 ~~~~kV~ill~~g~---~~~e~-~-~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
.+++|+.|++.+.. ..... . .+...|++++++++++-.+.. .+...+..+ .....||.|++.||.
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-----ghA~~la~~-----~~~~~~D~VV~vGGD 178 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQ-----LHAKEVVRT-----MDLSKYDGIVCVSGD 178 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCc-----cHHHHHHHH-----hhhcCCCEEEEEcCC
Confidence 35789999887621 22222 2 355588899998877644421 011112111 112359999999993
No 462
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=20.02 E-value=4.6e+02 Score=25.11 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHH
Q 012037 96 EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQ 175 (472)
Q Consensus 96 ~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~ 175 (472)
...|+....+-|+++|.+|.+.-..+. +-+ --.+-|+..|++... =.+++.|-. ....++...+.+++.+++-
T Consensus 55 A~~Ef~amve~L~~~GvdV~ifddtg~-~~T---PDsvFPNNWFSTh~~--g~v~LyPM~-~~nRRlER~~~lid~lk~~ 127 (318)
T COG4874 55 AMSEFNAMVEGLRQAGVDVVIFDDTGQ-GET---PDSVFPNNWFSTHEA--GEVFLYPMA-CANRRLERPEALIDTLKQG 127 (318)
T ss_pred HHHHHHHHHHHHHhcCceEEEeecCCC-CCC---CcccCCCcccccCcC--CeEEEeecc-CccccccchHHHHHHHHhh
Confidence 368899999999999999999987643 211 123556666776652 345566654 2344566678899999887
Q ss_pred HhcCCe
Q 012037 176 AEEKRL 181 (472)
Q Consensus 176 ~~~~k~ 181 (472)
++-.|.
T Consensus 128 ~~v~~v 133 (318)
T COG4874 128 FAVKKV 133 (318)
T ss_pred hhhhhh
Confidence 765544
No 463
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=20.02 E-value=1e+02 Score=29.47 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=41.1
Q ss_pred CcccEEEEcCCCcch-hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 348 SVYDLIILPGGVAGA-ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 348 ~~~D~livpGG~~~~-~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
...+.||+.||.... ....+|.++.+.|++.+++|..|++..+|+.++...
T Consensus 105 ~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~~ 156 (293)
T COG4242 105 ENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSDH 156 (293)
T ss_pred HhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCCc
Confidence 567899999996421 224578899999999999999999999999987643
Done!