Query 012037
Match_columns 472
No_of_seqs 439 out of 3206
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uk7_A Class I glutamine amido 100.0 4.2E-62 1.5E-66 500.7 32.5 341 82-455 10-393 (396)
2 4e08_A DJ-1 beta; flavodoxin-l 100.0 6.1E-39 2.1E-43 295.7 21.0 185 286-470 4-190 (190)
3 3gra_A Transcriptional regulat 100.0 1.4E-38 4.7E-43 296.0 18.0 182 286-472 4-195 (202)
4 3mgk_A Intracellular protease/ 100.0 2.7E-38 9.2E-43 296.0 20.0 182 286-471 3-191 (211)
5 3noq_A THIJ/PFPI family protei 100.0 5.7E-38 1.9E-42 297.6 21.8 182 286-471 4-188 (231)
6 3ot1_A 4-methyl-5(B-hydroxyeth 100.0 3.6E-38 1.2E-42 294.6 17.7 193 83-275 8-202 (208)
7 3ewn_A THIJ/PFPI family protei 100.0 1.8E-37 6E-42 297.5 22.8 184 286-471 22-208 (253)
8 4e08_A DJ-1 beta; flavodoxin-l 100.0 6.4E-38 2.2E-42 288.9 18.8 184 84-268 5-190 (190)
9 2rk3_A Protein DJ-1; parkinson 100.0 1.1E-37 3.8E-42 289.0 20.1 185 286-470 2-190 (197)
10 3er6_A Putative transcriptiona 100.0 5E-38 1.7E-42 293.8 17.7 183 286-471 7-202 (209)
11 3ot1_A 4-methyl-5(B-hydroxyeth 100.0 1.2E-37 4E-42 291.2 18.7 182 286-468 8-193 (208)
12 2ab0_A YAJL; DJ-1/THIJ superfa 100.0 1.5E-37 5.2E-42 289.8 18.8 186 287-472 2-192 (205)
13 4gdh_A DJ-1, uncharacterized p 100.0 3.5E-37 1.2E-41 284.6 19.1 182 286-468 3-194 (194)
14 4hcj_A THIJ/PFPI domain protei 100.0 1.7E-36 5.9E-41 275.1 18.8 167 286-454 7-175 (177)
15 3mgk_A Intracellular protease/ 100.0 5.1E-37 1.7E-41 287.3 15.7 192 83-279 3-204 (211)
16 2ab0_A YAJL; DJ-1/THIJ superfa 100.0 1E-36 3.5E-41 284.2 17.0 190 84-273 2-195 (205)
17 3gra_A Transcriptional regulat 100.0 3E-37 1E-41 286.9 13.3 185 82-272 3-197 (202)
18 3ewn_A THIJ/PFPI family protei 100.0 5.9E-36 2E-40 286.9 19.3 184 83-269 22-208 (253)
19 2rk3_A Protein DJ-1; parkinson 100.0 2.8E-36 9.6E-41 279.5 16.5 185 84-269 3-191 (197)
20 3noq_A THIJ/PFPI family protei 100.0 5.1E-36 1.7E-40 284.2 18.4 181 84-269 5-188 (231)
21 4gdh_A DJ-1, uncharacterized p 100.0 1.8E-36 6.2E-41 279.8 14.1 183 82-266 2-194 (194)
22 3er6_A Putative transcriptiona 100.0 4.9E-36 1.7E-40 280.3 15.2 186 81-270 5-203 (209)
23 3bhn_A THIJ/PFPI domain protei 100.0 8.8E-36 3E-40 282.7 16.7 180 286-471 19-203 (236)
24 3efe_A THIJ/PFPI family protei 100.0 8.2E-36 2.8E-40 279.4 15.8 180 287-471 5-198 (212)
25 4hcj_A THIJ/PFPI domain protei 100.0 1.7E-35 5.9E-40 268.5 15.6 167 83-252 7-175 (177)
26 3l18_A Intracellular protease 100.0 5.7E-35 2E-39 263.7 17.9 164 287-452 2-167 (168)
27 3efe_A THIJ/PFPI family protei 100.0 5.6E-35 1.9E-39 273.7 16.0 189 83-277 4-207 (212)
28 2vrn_A Protease I, DR1199; cys 100.0 1E-34 3.5E-39 267.4 15.1 173 286-459 8-188 (190)
29 3fse_A Two-domain protein cont 100.0 2.9E-34 9.9E-39 287.1 14.7 179 285-465 8-190 (365)
30 2vrn_A Protease I, DR1199; cys 100.0 4.1E-34 1.4E-38 263.4 14.2 174 82-257 7-188 (190)
31 1oi4_A Hypothetical protein YH 100.0 2.1E-33 7.2E-38 259.3 19.0 171 281-453 17-192 (193)
32 2fex_A Conserved hypothetical 100.0 4.7E-34 1.6E-38 262.6 14.4 176 287-468 1-183 (188)
33 3l18_A Intracellular protease 100.0 3.4E-34 1.2E-38 258.6 13.1 164 84-250 2-167 (168)
34 3f5d_A Protein YDEA; unknow pr 100.0 5.2E-34 1.8E-38 265.6 14.0 175 287-469 3-183 (206)
35 3bhn_A THIJ/PFPI domain protei 100.0 3.2E-34 1.1E-38 272.0 12.1 185 81-272 17-206 (236)
36 3f5d_A Protein YDEA; unknow pr 100.0 6.4E-33 2.2E-37 258.2 16.3 181 84-273 3-189 (206)
37 3fse_A Two-domain protein cont 100.0 2.8E-33 9.6E-38 279.9 14.3 181 81-264 7-191 (365)
38 2fex_A Conserved hypothetical 100.0 1.6E-32 5.5E-37 252.3 14.8 176 84-266 1-183 (188)
39 1oi4_A Hypothetical protein YH 100.0 3.3E-32 1.1E-36 251.3 15.7 167 82-251 21-192 (193)
40 3cne_A Putative protease I; st 100.0 3.5E-32 1.2E-36 247.1 15.6 160 287-452 2-174 (175)
41 1u9c_A APC35852; structural ge 100.0 9.4E-32 3.2E-36 254.1 13.7 169 286-455 4-223 (224)
42 3cne_A Putative protease I; st 100.0 6.9E-31 2.4E-35 238.6 15.1 160 84-250 2-174 (175)
43 1u9c_A APC35852; structural ge 100.0 1.1E-30 3.7E-35 246.8 13.5 169 84-254 5-224 (224)
44 1rw7_A YDR533CP; alpha-beta sa 100.0 3.9E-30 1.3E-34 245.9 12.4 167 287-454 3-237 (243)
45 3kkl_A Probable chaperone prot 100.0 1.5E-29 5.3E-34 241.0 14.5 171 287-457 3-240 (244)
46 3uk7_A Class I glutamine amido 100.0 5.2E-29 1.8E-33 255.0 18.4 170 286-456 11-201 (396)
47 1n57_A Chaperone HSP31, protei 100.0 1.5E-29 5E-34 247.6 13.0 171 286-457 47-282 (291)
48 3kkl_A Probable chaperone prot 100.0 7.3E-29 2.5E-33 236.3 13.7 170 84-254 3-239 (244)
49 3n7t_A Macrophage binding prot 100.0 9.5E-29 3.2E-33 235.7 13.6 168 287-455 9-244 (247)
50 1vhq_A Enhancing lycopene bios 100.0 3.2E-29 1.1E-33 238.0 9.3 166 286-458 5-213 (232)
51 1rw7_A YDR533CP; alpha-beta sa 100.0 8.6E-29 3E-33 236.5 11.1 167 84-252 3-237 (243)
52 1n57_A Chaperone HSP31, protei 100.0 3.7E-28 1.3E-32 237.7 15.6 171 84-256 48-283 (291)
53 3n7t_A Macrophage binding prot 99.9 5.4E-28 1.8E-32 230.5 12.6 169 84-253 9-244 (247)
54 1vhq_A Enhancing lycopene bios 99.9 6E-28 2E-32 229.2 7.8 180 82-271 4-226 (232)
55 3l3b_A ES1 family protein; ssg 99.9 4.1E-27 1.4E-31 223.7 10.8 167 286-456 22-229 (242)
56 3l3b_A ES1 family protein; ssg 99.9 1.6E-26 5.5E-31 219.6 9.7 165 84-253 23-228 (242)
57 1sy7_A Catalase 1; heme oxidat 99.9 1.2E-22 4.2E-27 217.8 17.0 173 51-252 511-698 (715)
58 1sy7_A Catalase 1; heme oxidat 99.8 4.7E-21 1.6E-25 205.6 15.5 152 287-454 534-698 (715)
59 3ttv_A Catalase HPII; heme ori 99.8 1.7E-20 5.9E-25 199.1 15.6 135 49-199 577-711 (753)
60 2iuf_A Catalase; oxidoreductas 99.8 5.8E-18 2E-22 179.4 16.4 149 53-251 510-676 (688)
61 3ej6_A Catalase-3; heme, hydro 99.7 3E-17 1E-21 173.4 16.4 126 51-199 516-649 (688)
62 3ttv_A Catalase HPII; heme ori 99.7 1.6E-17 5.6E-22 176.4 13.3 113 286-401 599-711 (753)
63 2iuf_A Catalase; oxidoreductas 99.6 2E-14 6.9E-19 152.4 14.7 142 251-402 485-652 (688)
64 3ej6_A Catalase-3; heme, hydro 99.5 2E-13 6.8E-18 144.4 14.2 140 252-401 494-649 (688)
65 3d54_D Phosphoribosylformylgly 99.0 2.1E-10 7.3E-15 106.4 6.8 95 286-404 1-101 (213)
66 3d54_D Phosphoribosylformylgly 98.9 3.5E-09 1.2E-13 98.2 7.6 94 84-202 2-101 (213)
67 2nv0_A Glutamine amidotransfer 98.1 4.5E-06 1.6E-10 76.0 6.6 87 287-398 1-88 (196)
68 3l7n_A Putative uncharacterize 98.0 3.3E-05 1.1E-09 72.5 11.2 94 288-398 1-100 (236)
69 3m3p_A Glutamine amido transfe 98.0 2.3E-05 7.8E-10 74.2 9.9 95 287-398 3-98 (250)
70 1q7r_A Predicted amidotransfer 98.0 6.6E-06 2.2E-10 76.4 5.6 87 287-398 23-110 (219)
71 2iss_D Glutamine amidotransfer 97.9 1.1E-05 3.7E-10 74.3 6.3 88 286-398 19-107 (208)
72 1q7r_A Predicted amidotransfer 97.9 1.3E-05 4.5E-10 74.4 6.0 87 84-196 23-110 (219)
73 2nv0_A Glutamine amidotransfer 97.9 1.6E-05 5.5E-10 72.3 6.4 87 84-196 1-88 (196)
74 1ka9_H Imidazole glycerol phos 97.8 3.3E-05 1.1E-09 70.5 6.9 88 287-398 2-91 (200)
75 3l7n_A Putative uncharacterize 97.8 0.00015 5.2E-09 67.9 11.1 94 85-196 1-100 (236)
76 2iss_D Glutamine amidotransfer 97.7 3.1E-05 1.1E-09 71.2 5.8 87 84-196 20-107 (208)
77 2ywd_A Glutamine amidotransfer 97.7 3.1E-05 1.1E-09 70.0 5.5 87 287-398 2-90 (191)
78 1wl8_A GMP synthase [glutamine 97.7 0.0001 3.5E-09 66.5 8.2 86 290-398 3-88 (189)
79 1ka9_H Imidazole glycerol phos 97.6 9.5E-05 3.2E-09 67.4 7.2 87 84-196 2-91 (200)
80 3m3p_A Glutamine amido transfe 97.6 0.00027 9.2E-09 66.8 10.3 95 84-196 3-98 (250)
81 3ugj_A Phosphoribosylformylgly 97.5 0.0003 1E-08 80.4 11.5 101 286-404 1046-1159(1303)
82 1qdl_B Protein (anthranilate s 97.5 0.00016 5.5E-09 65.7 7.4 90 290-398 4-93 (195)
83 2ywd_A Glutamine amidotransfer 97.5 8.8E-05 3E-09 67.0 5.0 87 84-196 2-90 (191)
84 1o1y_A Conserved hypothetical 97.4 0.00028 9.5E-09 66.3 7.0 95 287-398 12-109 (239)
85 2abw_A PDX2 protein, glutamina 97.3 0.00028 9.5E-09 65.6 6.3 86 288-398 4-96 (227)
86 2a9v_A GMP synthase; structura 97.3 0.00063 2.2E-08 62.6 8.3 90 285-398 11-101 (212)
87 3ugj_A Phosphoribosylformylgly 97.2 0.00089 3.1E-08 76.6 10.5 101 83-202 1046-1159(1303)
88 1wl8_A GMP synthase [glutamine 97.2 0.00054 1.9E-08 61.7 6.9 86 87-196 3-88 (189)
89 2ywj_A Glutamine amidotransfer 97.2 0.00052 1.8E-08 61.6 6.3 83 288-398 1-84 (186)
90 2abw_A PDX2 protein, glutamina 97.1 0.0004 1.4E-08 64.5 5.3 87 84-196 3-96 (227)
91 1gpw_B Amidotransferase HISH; 97.1 0.00073 2.5E-08 61.4 6.7 87 288-399 1-94 (201)
92 1qdl_B Protein (anthranilate s 97.0 0.00063 2.1E-08 61.7 5.7 90 87-196 4-93 (195)
93 2ywj_A Glutamine amidotransfer 96.9 0.0011 3.7E-08 59.5 6.2 83 85-196 1-84 (186)
94 1gpw_B Amidotransferase HISH; 96.9 0.0019 6.3E-08 58.7 7.6 86 85-197 1-94 (201)
95 1a9x_B Carbamoyl phosphate syn 96.9 0.0032 1.1E-07 62.9 9.8 87 288-398 191-277 (379)
96 4gud_A Imidazole glycerol phos 96.8 0.00065 2.2E-08 62.2 3.3 87 287-398 2-88 (211)
97 4gud_A Imidazole glycerol phos 96.7 0.00054 1.9E-08 62.8 2.3 87 84-196 2-88 (211)
98 1o1y_A Conserved hypothetical 96.7 0.0032 1.1E-07 58.9 7.4 93 86-196 14-109 (239)
99 2v4u_A CTP synthase 2; pyrimid 96.6 0.0013 4.6E-08 63.4 4.2 102 287-397 25-134 (289)
100 1fy2_A Aspartyl dipeptidase; s 96.6 0.0012 4E-08 61.6 3.6 97 286-399 30-130 (229)
101 3l4e_A Uncharacterized peptida 96.4 0.0024 8.2E-08 58.4 4.5 99 287-398 27-129 (206)
102 2vpi_A GMP synthase; guanine m 96.0 0.0019 6.6E-08 59.6 1.8 88 287-398 24-112 (218)
103 2a9v_A GMP synthase; structura 95.9 0.013 4.6E-07 53.6 7.0 89 83-196 12-101 (212)
104 2vdj_A Homoserine O-succinyltr 95.9 0.019 6.6E-07 55.4 8.1 112 286-399 34-153 (301)
105 2vdj_A Homoserine O-succinyltr 95.9 0.017 5.9E-07 55.7 7.7 116 81-197 32-153 (301)
106 2w7t_A CTP synthetase, putativ 95.8 0.024 8.2E-07 54.0 8.6 96 288-397 9-111 (273)
107 2h2w_A Homoserine O-succinyltr 95.8 0.017 5.9E-07 55.9 7.6 116 81-197 44-165 (312)
108 3fij_A LIN1909 protein; 11172J 95.8 0.02 6.7E-07 54.0 7.7 79 305-398 32-124 (254)
109 1a9x_B Carbamoyl phosphate syn 95.8 0.026 8.9E-07 56.3 8.8 88 84-196 190-277 (379)
110 1jvn_A Glutamine, bifunctional 95.7 0.0095 3.2E-07 62.8 5.6 89 287-398 4-95 (555)
111 3l4e_A Uncharacterized peptida 95.6 0.0067 2.3E-07 55.4 3.4 98 84-195 27-128 (206)
112 1fy2_A Aspartyl dipeptidase; s 95.6 0.0068 2.3E-07 56.3 3.5 96 84-197 31-130 (229)
113 3nva_A CTP synthase; rossman f 95.6 0.025 8.7E-07 58.2 7.9 155 225-397 232-394 (535)
114 2h2w_A Homoserine O-succinyltr 95.6 0.073 2.5E-06 51.5 10.8 112 286-399 46-165 (312)
115 3uow_A GMP synthetase; structu 95.5 0.056 1.9E-06 56.8 10.6 92 287-398 7-99 (556)
116 1jvn_A Glutamine, bifunctional 95.5 0.011 3.6E-07 62.4 4.8 88 84-196 4-95 (555)
117 2vpi_A GMP synthase; guanine m 95.0 0.0059 2E-07 56.3 1.1 88 84-196 24-112 (218)
118 3r75_A Anthranilate/para-amino 94.7 0.098 3.4E-06 55.9 9.6 90 287-398 446-537 (645)
119 1l9x_A Gamma-glutamyl hydrolas 94.6 0.051 1.7E-06 52.9 6.5 97 287-397 30-139 (315)
120 3uow_A GMP synthetase; structu 94.4 0.15 5.3E-06 53.5 10.4 92 84-196 7-99 (556)
121 2w7t_A CTP synthetase, putativ 94.2 0.057 1.9E-06 51.4 5.9 98 85-195 9-111 (273)
122 3tqi_A GMP synthase [glutamine 94.1 0.064 2.2E-06 56.0 6.6 88 288-398 11-98 (527)
123 2v4u_A CTP synthase 2; pyrimid 94.0 0.043 1.5E-06 52.7 4.6 102 84-195 25-134 (289)
124 1l9x_A Gamma-glutamyl hydrolas 93.6 0.056 1.9E-06 52.6 4.6 97 84-195 30-139 (315)
125 1i1q_B Anthranilate synthase c 93.2 0.33 1.1E-05 43.2 8.8 90 289-398 2-92 (192)
126 3r75_A Anthranilate/para-amino 93.1 0.65 2.2E-05 49.5 12.3 90 83-196 445-537 (645)
127 3nva_A CTP synthase; rossman f 92.0 0.49 1.7E-05 48.7 9.2 97 84-194 293-393 (535)
128 1gpm_A GMP synthetase, XMP ami 91.9 0.17 6E-06 52.7 5.8 88 288-398 8-95 (525)
129 3fij_A LIN1909 protein; 11172J 91.7 0.2 6.9E-06 46.9 5.5 78 102-196 32-124 (254)
130 3tqi_A GMP synthase [glutamine 91.4 0.33 1.1E-05 50.6 7.3 89 84-196 10-98 (527)
131 1s1m_A CTP synthase; CTP synth 90.0 0.39 1.3E-05 50.0 6.3 224 146-397 133-387 (545)
132 3en0_A Cyanophycinase; serine 89.5 0.54 1.8E-05 45.0 6.3 99 288-397 57-160 (291)
133 1vco_A CTP synthetase; tetrame 89.4 0.38 1.3E-05 50.1 5.6 226 146-398 144-400 (550)
134 3en0_A Cyanophycinase; serine 89.2 0.33 1.1E-05 46.4 4.7 101 84-196 56-161 (291)
135 1gpm_A GMP synthetase, XMP ami 88.5 0.3 1E-05 51.0 4.1 88 84-195 7-94 (525)
136 1i1q_B Anthranilate synthase c 87.0 1.4 4.6E-05 39.1 7.0 91 86-196 2-92 (192)
137 2vxo_A GMP synthase [glutamine 86.2 0.36 1.2E-05 52.0 3.2 88 288-398 30-117 (697)
138 2ywb_A GMP synthase [glutamine 86.0 0.89 3E-05 47.0 6.0 86 290-398 2-87 (503)
139 3rht_A (gatase1)-like protein; 85.2 1.6 5.3E-05 41.0 6.7 86 82-187 2-87 (259)
140 3rht_A (gatase1)-like protein; 85.2 1.7 5.8E-05 40.7 6.9 85 286-390 3-87 (259)
141 1s1m_A CTP synthase; CTP synth 84.4 0.91 3.1E-05 47.2 5.1 45 146-195 343-387 (545)
142 1vco_A CTP synthetase; tetrame 82.1 0.92 3.2E-05 47.2 4.0 45 146-195 355-399 (550)
143 2ywb_A GMP synthase [glutamine 76.4 2.1 7.1E-05 44.2 4.6 75 101-196 13-87 (503)
144 2vxo_A GMP synthase [glutamine 74.2 1.1 3.6E-05 48.3 1.7 89 84-196 29-117 (697)
145 2zuv_A Lacto-N-biose phosphory 68.1 16 0.00055 38.6 8.7 88 84-187 438-544 (759)
146 2a5l_A Trp repressor binding p 66.8 13 0.00044 32.4 7.0 100 287-391 5-117 (200)
147 2ark_A Flavodoxin; FMN, struct 66.5 9.7 0.00033 33.2 6.1 85 286-390 3-96 (188)
148 2ark_A Flavodoxin; FMN, struct 65.7 11 0.00036 32.9 6.2 85 84-188 4-97 (188)
149 3f6r_A Flavodoxin; FMN binding 60.0 6.5 0.00022 32.7 3.5 88 287-391 1-94 (148)
150 3d3j_A Enhancer of mRNA-decapp 59.3 94 0.0032 29.4 11.9 101 84-190 132-244 (306)
151 3d3k_A Enhancer of mRNA-decapp 57.6 89 0.0031 28.8 11.2 101 84-190 85-197 (259)
152 2r47_A Uncharacterized protein 56.8 32 0.0011 29.2 7.0 105 286-399 25-133 (157)
153 2a5l_A Trp repressor binding p 56.7 19 0.00064 31.3 6.2 100 84-189 5-118 (200)
154 1u0t_A Inorganic polyphosphate 54.6 28 0.00096 33.0 7.4 96 286-392 3-109 (307)
155 3ff4_A Uncharacterized protein 54.5 53 0.0018 26.5 8.0 63 83-153 3-65 (122)
156 1ydg_A Trp repressor binding p 53.0 25 0.00084 31.0 6.4 101 83-189 5-125 (211)
157 1t0b_A THUA-like protein; treh 52.7 26 0.00089 32.3 6.6 72 305-392 36-107 (252)
158 1ydg_A Trp repressor binding p 52.2 31 0.0011 30.3 6.9 100 286-391 5-124 (211)
159 2zuv_A Lacto-N-biose phosphory 51.8 29 0.001 36.7 7.2 74 302-391 469-545 (759)
160 3b6i_A Flavoprotein WRBA; flav 50.7 39 0.0013 29.1 7.2 101 287-392 1-115 (198)
161 3b6i_A Flavoprotein WRBA; flav 49.1 45 0.0015 28.7 7.4 100 84-189 1-115 (198)
162 1jg7_A BGT, DNA beta-glucosylt 48.6 22 0.00074 32.1 5.0 49 298-357 18-66 (351)
163 2r47_A Uncharacterized protein 48.4 8.4 0.00029 32.8 2.2 106 84-199 26-135 (157)
164 4e5v_A Putative THUA-like prot 48.0 1.7E+02 0.0058 27.2 11.6 91 286-392 3-96 (281)
165 2hna_A Protein MIOC, flavodoxi 47.9 82 0.0028 25.7 8.5 88 287-393 1-93 (147)
166 2an1_A Putative kinase; struct 46.6 17 0.0006 34.1 4.5 89 84-187 5-95 (292)
167 1z0s_A Probable inorganic poly 46.6 25 0.00087 33.0 5.5 71 85-188 30-100 (278)
168 4e5v_A Putative THUA-like prot 46.1 1.9E+02 0.0064 26.9 12.2 90 83-188 3-95 (281)
169 1u0t_A Inorganic polyphosphate 45.9 52 0.0018 31.1 7.7 93 84-187 4-107 (307)
170 3s40_A Diacylglycerol kinase; 45.7 25 0.00087 33.2 5.5 87 81-187 5-97 (304)
171 2q9u_A A-type flavoprotein; fl 44.7 34 0.0012 33.6 6.5 91 83-189 255-351 (414)
172 2q9u_A A-type flavoprotein; fl 44.3 60 0.002 31.7 8.2 91 286-392 255-351 (414)
173 3tty_A Beta-GAL, beta-galactos 43.2 61 0.0021 34.5 8.5 63 98-187 425-487 (675)
174 3f6r_A Flavodoxin; FMN binding 42.7 84 0.0029 25.5 7.8 88 84-188 1-94 (148)
175 1sqs_A Conserved hypothetical 42.6 21 0.00072 32.4 4.2 102 84-189 1-126 (242)
176 2bon_A Lipid kinase; DAG kinas 42.4 16 0.00053 35.2 3.4 96 84-199 29-131 (332)
177 3hly_A Flavodoxin-like domain; 42.1 33 0.0011 28.9 5.2 90 288-392 1-92 (161)
178 3hly_A Flavodoxin-like domain; 41.1 24 0.00083 29.8 4.1 88 85-190 1-93 (161)
179 1z0s_A Probable inorganic poly 41.0 34 0.0012 32.1 5.4 73 287-392 29-101 (278)
180 3ff4_A Uncharacterized protein 40.6 81 0.0028 25.4 7.0 63 286-356 3-65 (122)
181 2i2c_A Probable inorganic poly 40.1 50 0.0017 30.6 6.5 66 85-187 1-69 (272)
182 2qv7_A Diacylglycerol kinase D 39.9 32 0.0011 33.0 5.2 96 84-198 24-126 (337)
183 1jg7_A BGT, DNA beta-glucosylt 38.3 57 0.0019 29.4 6.0 59 85-154 1-66 (351)
184 1f4p_A Flavodoxin; electron tr 38.3 29 0.001 28.4 4.1 85 288-391 1-93 (147)
185 3tty_A Beta-GAL, beta-galactos 38.1 67 0.0023 34.1 7.8 64 302-392 426-490 (675)
186 3l49_A ABC sugar (ribose) tran 37.2 30 0.001 31.6 4.5 89 82-187 3-94 (291)
187 3i83_A 2-dehydropantoate 2-red 36.8 36 0.0012 32.3 5.0 94 287-392 2-108 (320)
188 3fni_A Putative diflavin flavo 36.7 49 0.0017 27.8 5.4 91 287-391 4-96 (159)
189 3m9w_A D-xylose-binding peripl 34.6 41 0.0014 31.2 5.0 87 84-187 2-91 (313)
190 2an1_A Putative kinase; struct 34.6 40 0.0014 31.5 4.9 91 287-392 5-97 (292)
191 3fni_A Putative diflavin flavo 33.1 60 0.002 27.3 5.3 89 84-189 4-97 (159)
192 3cs3_A Sugar-binding transcrip 32.8 2.6E+02 0.009 24.8 10.7 80 82-187 6-88 (277)
193 3g1w_A Sugar ABC transporter; 31.5 34 0.0012 31.5 3.8 89 83-187 3-94 (305)
194 2zki_A 199AA long hypothetical 31.2 92 0.0031 26.7 6.5 99 286-391 3-116 (199)
195 1t0b_A THUA-like protein; treh 31.1 1.1E+02 0.0037 28.0 7.1 70 103-188 37-106 (252)
196 1ykg_A SIR-FP, sulfite reducta 30.8 36 0.0012 28.8 3.5 89 286-391 8-102 (167)
197 3l6u_A ABC-type sugar transpor 30.3 39 0.0013 30.8 4.0 89 82-187 6-97 (293)
198 3uug_A Multiple sugar-binding 30.3 57 0.002 30.3 5.3 88 83-187 2-92 (330)
199 3kjx_A Transcriptional regulat 30.3 1.2E+02 0.004 28.5 7.6 39 286-324 67-108 (344)
200 2q62_A ARSH; alpha/beta, flavo 29.2 38 0.0013 31.1 3.6 99 83-189 33-146 (247)
201 2vzf_A NADH-dependent FMN redu 28.3 21 0.00072 31.2 1.6 100 287-392 2-112 (197)
202 2hna_A Protein MIOC, flavodoxi 27.6 2.4E+02 0.0082 22.7 9.2 86 84-188 1-91 (147)
203 1t5b_A Acyl carrier protein ph 27.5 49 0.0017 28.5 3.9 88 84-177 1-114 (201)
204 4hv4_A UDP-N-acetylmuramate--L 27.5 1.6E+02 0.0054 29.8 8.3 68 83-156 21-91 (494)
205 2fz5_A Flavodoxin; alpha/beta 27.3 2.2E+02 0.0076 22.2 8.3 66 305-390 19-88 (137)
206 2pln_A HP1043, response regula 26.9 94 0.0032 24.3 5.3 79 82-187 16-94 (137)
207 1sqs_A Conserved hypothetical 26.9 38 0.0013 30.6 3.1 99 287-391 1-125 (242)
208 3m9w_A D-xylose-binding peripl 26.8 70 0.0024 29.5 5.2 86 287-389 2-90 (313)
209 2ohh_A Type A flavoprotein FPR 26.4 1E+02 0.0034 29.9 6.4 91 286-392 255-353 (404)
210 3ty2_A 5'-nucleotidase SURE; s 26.1 99 0.0034 28.6 5.7 40 82-122 9-48 (261)
211 2phj_A 5'-nucleotidase SURE; S 25.8 93 0.0032 28.6 5.5 38 84-122 1-38 (251)
212 3okf_A 3-dehydroquinate syntha 25.4 46 0.0016 32.8 3.6 139 83-233 61-200 (390)
213 2qv7_A Diacylglycerol kinase D 25.0 95 0.0033 29.5 5.8 93 287-398 24-123 (337)
214 5nul_A Flavodoxin; electron tr 24.9 73 0.0025 25.5 4.3 70 304-391 17-88 (138)
215 2i2c_A Probable inorganic poly 24.7 1.2E+02 0.004 28.0 6.2 36 348-392 34-71 (272)
216 3eag_A UDP-N-acetylmuramate:L- 24.6 4.2E+02 0.014 24.7 10.3 71 286-359 3-76 (326)
217 3k9c_A Transcriptional regulat 24.3 88 0.003 28.5 5.3 85 81-187 9-96 (289)
218 2gk3_A Putative cytoplasmic pr 23.8 95 0.0033 28.4 5.3 75 302-389 41-125 (256)
219 3l49_A ABC sugar (ribose) tran 23.7 1.5E+02 0.005 26.7 6.7 87 286-389 4-93 (291)
220 3gbv_A Putative LACI-family tr 23.5 68 0.0023 29.2 4.3 91 82-187 6-102 (304)
221 3l6u_A ABC-type sugar transpor 23.4 57 0.002 29.7 3.7 88 285-389 6-96 (293)
222 3d3j_A Enhancer of mRNA-decapp 22.8 4.7E+02 0.016 24.4 11.7 100 288-392 133-244 (306)
223 3nq4_A 6,7-dimethyl-8-ribityll 22.8 1.2E+02 0.0041 25.7 5.2 92 286-386 11-113 (156)
224 1di0_A Lumazine synthase; tran 22.7 35 0.0012 29.1 1.8 92 84-184 10-111 (158)
225 2ohh_A Type A flavoprotein FPR 22.5 1E+02 0.0035 29.7 5.6 91 84-190 256-354 (404)
226 3tb6_A Arabinose metabolism tr 22.3 1.1E+02 0.0038 27.6 5.6 90 84-187 15-107 (298)
227 3eag_A UDP-N-acetylmuramate:L- 22.3 3E+02 0.01 25.8 8.7 90 83-184 3-95 (326)
228 2i0f_A 6,7-dimethyl-8-ribityll 22.2 99 0.0034 26.2 4.6 94 85-184 13-115 (157)
229 2fn9_A Ribose ABC transporter, 22.2 73 0.0025 28.9 4.2 87 84-187 2-91 (290)
230 3nbm_A PTS system, lactose-spe 22.1 2.8E+02 0.0097 21.6 8.5 80 83-187 5-86 (108)
231 3uug_A Multiple sugar-binding 22.0 88 0.003 29.0 4.8 88 286-390 2-92 (330)
232 3kjx_A Transcriptional regulat 21.8 1.7E+02 0.0057 27.4 6.8 87 81-186 65-154 (344)
233 3qk7_A Transcriptional regulat 21.7 96 0.0033 28.3 5.0 86 82-187 4-96 (294)
234 2b99_A Riboflavin synthase; lu 21.4 46 0.0016 28.3 2.3 92 287-387 2-97 (156)
235 1d4a_A DT-diaphorase, quinone 21.3 3E+02 0.01 25.1 8.4 38 84-121 2-43 (273)
236 2xgg_A Microneme protein 2; A/ 21.3 1.2E+02 0.0041 25.5 5.2 39 83-121 121-161 (178)
237 2fn9_A Ribose ABC transporter, 21.0 71 0.0024 29.0 3.8 63 287-358 2-67 (290)
238 3huu_A Transcription regulator 21.0 46 0.0016 30.7 2.5 106 258-390 1-114 (305)
239 2i2x_B MTAC, methyltransferase 20.7 1.3E+02 0.0045 27.4 5.6 80 286-382 122-202 (258)
240 3jy6_A Transcriptional regulat 20.7 1.1E+02 0.0038 27.4 5.1 87 81-187 4-93 (276)
241 3rpe_A MDAB, modulator of drug 20.6 79 0.0027 28.3 3.9 85 81-180 22-114 (218)
242 3d02_A Putative LACI-type tran 20.5 73 0.0025 29.1 3.8 89 83-187 3-94 (303)
No 1
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-62 Score=500.72 Aligned_cols=341 Identities=18% Similarity=0.238 Sum_probs=306.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc---------------ceeccCCceeeeCCCcCCCCCCc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL---------------EVEASSGTRLVADTSISNCSHQV 146 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~---------------~v~~~~G~~v~~d~~~~~~~~~~ 146 (472)
..++||+||++|||+..|+..++++|+++||+++++|++++. .++++.|..+.+|.++++.++.+
T Consensus 10 ~~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 89 (396)
T 3uk7_A 10 ANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK 89 (396)
T ss_dssp -CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence 457899999999999999999999999999999999998541 35577899999999999988789
Q ss_pred ccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccC--
Q 012037 147 FDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKS-- 222 (472)
Q Consensus 147 ~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~-- 222 (472)
||+|+||||. +...+..++.+.+||+++++++|+|+++|+| .++|+++|||+||++|+||.+.+.|++ ++|++.
T Consensus 90 ~D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~ 167 (396)
T 3uk7_A 90 YDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHG-QLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPIT 167 (396)
T ss_dssp CSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSS
T ss_pred CCEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECch-HHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCC
Confidence 9999999995 4555778999999999999999999999996 569999999999999999999998875 555543
Q ss_pred --cEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcchhhhcccccccccCCCCEEEEEeCCCCCH
Q 012037 223 --NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIANGSEE 300 (472)
Q Consensus 223 --~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~g~~~ 300 (472)
.+|+|||+|||+|+.++.||++++|+++.|++. ..++||+|+++|||++
T Consensus 168 ~~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~-----------------------------~~~~ki~ill~dg~~~ 218 (396)
T 3uk7_A 168 PDVCVVDGSLITAATYEGHPEFIQLFVKALGGKIT-----------------------------GANKRILFLCGDYMED 218 (396)
T ss_dssp TTCEEEETTEEEESSGGGHHHHHHHHHHHTTCEEE-----------------------------CCCCEEEEECCTTEEH
T ss_pred CcceEecCCEEEecCcccHHHHHHHHHHHHhccch-----------------------------hccceEEEEecCCCcc
Confidence 489999999999999999999999999998752 2568999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecCCcc----------------eecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 301 IEIVTIVDILRRAKVDVVVASVERSTQ----------------IVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 301 ~e~~~~~d~l~~a~~~v~~vs~~~~~~----------------v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
.|+..++++|+++||+|+++|++++ + ++++.|..+.++..+++++..+||+|+||||. +...
T Consensus 219 ~e~~~~~~~l~~ag~~v~~vs~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~-~~~~ 296 (396)
T 3uk7_A 219 YEVKVPFQSLQALGCQVDAVCPEKK-AGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGR-APEY 296 (396)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCC-TTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCCC-CCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCc-chhh
Confidence 9999999999999999999999986 4 56788999999999999877899999999997 4666
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCC----cEEECCCEEEcCCh
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGT----KVVVDGKVITSRGL 438 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~----~vv~dg~iiTa~g~ 438 (472)
+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++. ..+.+. ++|+|||+|||+|+
T Consensus 297 ~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~ 376 (396)
T 3uk7_A 297 LALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAW 376 (396)
T ss_dssp HTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSG
T ss_pred hccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCc
Confidence 778999999999999999999999999999999999999999999999988865 344443 59999999999999
Q ss_pred hhHHHHHHHHHHHhcCH
Q 012037 439 ANVIDFALAIVSKFFGH 455 (472)
Q Consensus 439 ~~~~d~al~li~~~~g~ 455 (472)
.+++||++++|+++.|.
T Consensus 377 ~~~~d~~l~li~~l~~~ 393 (396)
T 3uk7_A 377 PGHPEFVSQLMALLGIQ 393 (396)
T ss_dssp GGHHHHHHHHHHHHTCE
T ss_pred hhHHHHHHHHHHHhccc
Confidence 99999999999999873
No 2
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=100.00 E-value=6.1e-39 Score=295.74 Aligned_cols=185 Identities=35% Similarity=0.615 Sum_probs=171.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
+++||+|+++|||+++|+..++++|+++||+++++|++++.++++++|+++.+|..+++++..+||+||||||..+...+
T Consensus 4 m~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~ 83 (190)
T 4e08_A 4 MSKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAM 83 (190)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHH
T ss_pred CCcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHh
Confidence 56899999999999999999999999999999999999832899999999999999999877789999999996445567
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc-ceec-CCcEEECCCEEEcCChhhHHH
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-EVVN-GTKVVVDGKVITSRGLANVID 443 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~-~~~~-~~~vv~dg~iiTa~g~~~~~d 443 (472)
..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ ..+. ++.+|+|||+|||+|+.+++|
T Consensus 84 ~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~d 163 (190)
T 4e08_A 84 GESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYE 163 (190)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHHH
T ss_pred hhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHHH
Confidence 78999999999999999999999999999999999999999999999999987 3444 589999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHhhcccccC
Q 012037 444 FALAIVSKFFGHARTRSVAEGLVFEYP 470 (472)
Q Consensus 444 ~al~li~~~~g~~~A~~va~~l~~~~~ 470 (472)
|++++|++++|++.|+++++.|+++|.
T Consensus 164 ~al~li~~~~g~~~a~~va~~l~~~~~ 190 (190)
T 4e08_A 164 FALKIAEELAGKEKVQEVAKGLLVAYN 190 (190)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence 999999999999999999999999884
No 3
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=100.00 E-value=1.4e-38 Score=296.01 Aligned_cols=182 Identities=19% Similarity=0.315 Sum_probs=162.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
+++||+|+++|||+++|+.+++|+|+.+| |+|+++|.+++ ++++++|+++.+| .+++++..+||+||||||.
T Consensus 4 ~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~ 81 (202)
T 3gra_A 4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGGL 81 (202)
T ss_dssp -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECCT
T ss_pred CcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCCC
Confidence 46799999999999999999999999987 99999999997 9999999999999 9998666889999999997
Q ss_pred cchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ceecCCcEEECCCEEEc
Q 012037 360 AGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVVNGTKVVVDGKVITS 435 (472)
Q Consensus 360 ~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~vv~dg~iiTa 435 (472)
.. ... . +.+++||+++++++++|++||+|+++||++|||+||++|+||...+.|++ ..+.++.+|+|||+|||
T Consensus 82 ~~-~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs 158 (202)
T 3gra_A 82 RT-PLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSA 158 (202)
T ss_dssp TC-CSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEE
T ss_pred ch-hhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEEC
Confidence 43 333 3 89999999999999999999999999999999999999999999888875 35567799999999999
Q ss_pred CChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCCC
Q 012037 436 RGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPRS 472 (472)
Q Consensus 436 ~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r~ 472 (472)
+|+++++||++++|++++|++.|+++++.|++++.|.
T Consensus 159 ~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~ 195 (202)
T 3gra_A 159 ASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGARE 195 (202)
T ss_dssp SSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcccc
Confidence 9999999999999999999999999999999998873
No 4
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=2.7e-38 Score=295.97 Aligned_cols=182 Identities=19% Similarity=0.353 Sum_probs=169.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
+++||+|+++|||+++|+..++|+|+.++ |+|+++|.+++ +|++++|+++.+|..+++. ++||+||||||. +..
T Consensus 3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~-~~~ 78 (211)
T 3mgk_A 3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDE--NIEKILFVPGGS-GTR 78 (211)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCS--SSEEEEEECCST-HHH
T ss_pred CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhC--CCCCEEEECCCc-chh
Confidence 46799999999999999999999999984 99999999997 9999999999999999987 569999999997 556
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----ce-ecCCcEEECCCEEEcCCh
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EV-VNGTKVVVDGKVITSRGL 438 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~-~~~~~vv~dg~iiTa~g~ 438 (472)
.+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ .. ..++.+|+|||+|||+|+
T Consensus 79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~ 158 (211)
T 3mgk_A 79 EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGV 158 (211)
T ss_dssp HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECSH
T ss_pred hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCCH
Confidence 6778999999999999999999999999999999999999999999999999876 23 357899999999999999
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 439 ANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 439 ~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
++++||++++|++++|++.|+++++.|++++.|
T Consensus 159 ~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r 191 (211)
T 3mgk_A 159 SAGIDMTLGFIEDLIGKEKALEISRSIEYFWNE 191 (211)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcC
Confidence 999999999999999999999999999999877
No 5
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=100.00 E-value=5.7e-38 Score=297.62 Aligned_cols=182 Identities=26% Similarity=0.385 Sum_probs=170.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
+++||+|+++|||+++|+.+++|+|+. ++|+|+++|.+++ +|++++|+.+.+|..++++ ++||+||||||. +...
T Consensus 4 m~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~-g~~~ 79 (231)
T 3noq_A 4 MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADC--PPLDVICIPGGT-GVGA 79 (231)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTC--CCCSEEEECCST-THHH
T ss_pred CcEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHC--CcCCEEEECCCC-Chhh
Confidence 568999999999999999999999999 7899999999997 9999999999999999988 679999999997 4666
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVI 442 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~ 442 (472)
+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ ..+.++.+|+|||+|||+|+++++
T Consensus 80 ~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~ 159 (231)
T 3noq_A 80 LMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGI 159 (231)
T ss_dssp HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred hccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHH
Confidence 778999999999999999999999999999999999999999999999998875 456788999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 443 DFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 443 d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
||++++|++++|++.|+++++.|+|++.+
T Consensus 160 d~aL~li~~~~G~~~A~~va~~l~~~~~~ 188 (231)
T 3noq_A 160 DFALTLAAELFDAATAQRVQLQLEYAPAP 188 (231)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCHHHHHHHHHhceeCCCC
Confidence 99999999999999999999999998754
No 6
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=100.00 E-value=3.6e-38 Score=294.64 Aligned_cols=193 Identities=37% Similarity=0.619 Sum_probs=176.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
.++||+|+++|||+..|+..++++|+++||+|+++|++++.+|++++|..+.+|.+++++++.+||+|+||||..+...+
T Consensus 8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l 87 (208)
T 3ot1_A 8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAF 87 (208)
T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHH
T ss_pred cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHH
Confidence 46899999999999999999999999999999999998523999999999999999999887799999999996455667
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEe--CCEEeCCCCCChH
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVS--GEVTTSRGPGTSF 240 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~D--g~iiTa~g~~~~~ 240 (472)
..++.+++||+++++++|+|++||+|++++|+++|||+||++||||...+.|.+.+++++++|+| ||+|||+|+.+++
T Consensus 88 ~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~~ 167 (208)
T 3ot1_A 88 ADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTAL 167 (208)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGHH
T ss_pred hhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHHH
Confidence 78999999999999999999999997537999999999999999999999998888888888875 5999999999999
Q ss_pred HHHHHHHHHHhCchhHHhhhhccccccCCcchhhh
Q 012037 241 EFALCLVEQLFGESVAKEIGELLLMHNADNSLKKE 275 (472)
Q Consensus 241 dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~~~ 275 (472)
||++++|++++|.++|++|++.|++++..+.|++.
T Consensus 168 d~al~lv~~l~G~~~a~~va~~l~~~~~~~~q~~~ 202 (208)
T 3ot1_A 168 EFALAMIALLAGVELAQHVAAPMVLHPQQLTELSG 202 (208)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGGTCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHhheeCCCCCCccch
Confidence 99999999999999999999999997777777653
No 7
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=100.00 E-value=1.8e-37 Score=297.45 Aligned_cols=184 Identities=17% Similarity=0.289 Sum_probs=170.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH-HhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDIL-RRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l-~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
+++||+|+++|||+++|+.+++|+| +.++|+|+++|.+++ +|++++|+.|.+|..++++. .+||+||||||..+...
T Consensus 22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~ 99 (253)
T 3ewn_A 22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA 99 (253)
T ss_dssp CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence 5589999999999999999999999 567899999999998 99999999999999999885 47899999999733566
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVI 442 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~ 442 (472)
+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ ..+.++.+|+|||+|||+|+++++
T Consensus 100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~i 179 (253)
T 3ewn_A 100 AASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGL 179 (253)
T ss_dssp HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHH
Confidence 778999999999999999999999999999999999999999999999999975 455788999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 443 DFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 443 d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
||+++||++++|++.|+++++.|+|++.+
T Consensus 180 dlaL~lv~~l~G~~~A~~va~~l~~~~~~ 208 (253)
T 3ewn_A 180 DFGLSMVAELRDQTYAECAQLMSEYDPDP 208 (253)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999998754
No 8
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=100.00 E-value=6.4e-38 Score=288.92 Aligned_cols=184 Identities=35% Similarity=0.559 Sum_probs=171.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
+|||+|+++|||++.|+..++++|+++||+++++|++++.++++++|..+.+|.+++++++.+||+|+||||..+...+.
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 84 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG 84 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence 58999999999999999999999999999999999997349999999999999999998877899999999954555677
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Ccccc-CcEEEeCCEEeCCCCCChHH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK-SNIHVSGEVTTSRGPGTSFE 241 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~-~~~v~Dg~iiTa~g~~~~~d 241 (472)
.++.+++||+++++++|+|+++|+| .++|+++|||+||++||||.+.+.|++ +++++ +.+|+|||+|||+|+.+++|
T Consensus 85 ~~~~~~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiTs~g~~a~~d 163 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGGLIAAICAA-PTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYE 163 (190)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETTEEEECSGGGHHH
T ss_pred hCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECCEEECCChHHHHH
Confidence 8999999999999999999999996 568999999999999999999999999 88885 88999999999999999999
Q ss_pred HHHHHHHHHhCchhHHhhhhccccccC
Q 012037 242 FALCLVEQLFGESVAKEIGELLLMHNA 268 (472)
Q Consensus 242 lal~li~~~~g~~~a~~va~~l~~~~~ 268 (472)
|++++|++++|+++|++|++.|+++++
T Consensus 164 ~al~li~~~~g~~~a~~va~~l~~~~~ 190 (190)
T 4e08_A 164 FALKIAEELAGKEKVQEVAKGLLVAYN 190 (190)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHhcCHHHHHHHHHhhCcccC
Confidence 999999999999999999999999763
No 9
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=100.00 E-value=1.1e-37 Score=288.98 Aligned_cols=185 Identities=36% Similarity=0.543 Sum_probs=169.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCcccc-CCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA-AESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~-~~~~~D~livpGG~~~~~~ 364 (472)
+++||+|+++|||++.|+..++|+|+++||+++++|++++.++++++|+++.++..++++ +..+||+||||||..+...
T Consensus 2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~ 81 (197)
T 2rk3_A 2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN 81 (197)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence 357999999999999999999999999999999999987547999999999999999987 7788999999999644555
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcc---eecCCcEEECCCEEEcCChhhH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNE---VVNGTKVVVDGKVITSRGLANV 441 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~---~~~~~~vv~dg~iiTa~g~~~~ 441 (472)
+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+++++. .+.++.+|+|||+|||+|+.++
T Consensus 82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~ 161 (197)
T 2rk3_A 82 LSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS 161 (197)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHH
Confidence 7789999999999999999999999999999999999999999999999999762 4788999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhcccccC
Q 012037 442 IDFALAIVSKFFGHARTRSVAEGLVFEYP 470 (472)
Q Consensus 442 ~d~al~li~~~~g~~~A~~va~~l~~~~~ 470 (472)
+||++++|++++|++.|+++++.|++++-
T Consensus 162 ~d~al~li~~l~g~~~a~~va~~~~~~~~ 190 (197)
T 2rk3_A 162 FEFALAIVEALNGKEVAAQVKAPLVLKDL 190 (197)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHGGGTC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999864
No 10
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=100.00 E-value=5e-38 Score=293.77 Aligned_cols=183 Identities=19% Similarity=0.219 Sum_probs=164.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK-------VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~-------~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
+++||+|+++|||+++|+.+++|+|+.+| |+|+++|.+++ +|++++|+++.+|..++++ ++||+||||||
T Consensus 7 ~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~--~~~D~livpGg 83 (209)
T 3er6_A 7 KNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSF--DFTNILIIGSI 83 (209)
T ss_dssp CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred CCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence 56899999999999999999999999986 99999999997 9999999999999999988 78999999999
Q ss_pred Ccchh-cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc----cee-cCCcEEECCCE
Q 012037 359 VAGAE-RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN----EVV-NGTKVVVDGKV 432 (472)
Q Consensus 359 ~~~~~-~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~----~~~-~~~~vv~dg~i 432 (472)
..... .+..++.+++||+++++++++|++||+|+++||++|||+||++|+||...+.|++ ..+ .++.+|+|||+
T Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~i 163 (209)
T 3er6_A 84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNV 163 (209)
T ss_dssp SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTE
T ss_pred CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCE
Confidence 73222 2367999999999999999999999999999999999999999999999988875 233 45679999999
Q ss_pred EEcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 433 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 433 iTa~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
|||+|+++++||++++|++++|++.|+++++.|++++..
T Consensus 164 iTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~ 202 (209)
T 3er6_A 164 YLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIESE 202 (209)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC----
T ss_pred EECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999998753
No 11
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=100.00 E-value=1.2e-37 Score=291.18 Aligned_cols=182 Identities=31% Similarity=0.561 Sum_probs=169.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecC-CcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVER-STQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~-~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
+++||+|+++|||+++|+..++|+|+++||+|+++|+++ + ++++++|+++.+|..+++++..+||+||||||..+.+.
T Consensus 8 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~-~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 86 (208)
T 3ot1_A 8 MSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL-QVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA 86 (208)
T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS-EEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH
T ss_pred cCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc-ceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH
Confidence 568999999999999999999999999999999999996 5 99999999999999999987779999999999744566
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhcceecCCcEEE--CCCEEEcCChhhH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVV--DGKVITSRGLANV 441 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~--dg~iiTa~g~~~~ 441 (472)
+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.|++..+.++++++ |||+|||+|+.++
T Consensus 87 l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~iiTs~g~~a~ 166 (208)
T 3ot1_A 87 FADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTA 166 (208)
T ss_dssp HHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTEEEECSGGGH
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCEEECCCHHHH
Confidence 7789999999999999999999999999 999999999999999999999999887777778887 4599999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037 442 IDFALAIVSKFFGHARTRSVAEGLVFE 468 (472)
Q Consensus 442 ~d~al~li~~~~g~~~A~~va~~l~~~ 468 (472)
+||++++|++++|++.|++|++.|+++
T Consensus 167 ~d~al~lv~~l~G~~~a~~va~~l~~~ 193 (208)
T 3ot1_A 167 LEFALAMIALLAGVELAQHVAAPMVLH 193 (208)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHGGGTCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhheeC
Confidence 999999999999999999999999984
No 12
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=100.00 E-value=1.5e-37 Score=289.78 Aligned_cols=186 Identities=36% Similarity=0.580 Sum_probs=174.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc--ceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST--QIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~--~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
++||+|+++|||++.|+..++|+|+.+||+++++|++++. ++.+++|+.+.++..+++++..+||+||||||..+...
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~ 81 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC 81 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence 5799999999999999999999999999999999999864 79999999999999999987788999999999644566
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhH-HHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCCE--EEcCChhhH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSP-IVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKV--ITSRGLANV 441 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~-~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~i--iTa~g~~~~ 441 (472)
+..++.+++||+++++++++|++||+|+ ++|+++|||+||++|+||...+.+++..+.++.+|+|||+ |||+|+.++
T Consensus 82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~ 161 (205)
T 2ab0_A 82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA 161 (205)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence 7789999999999999999999999999 9999999999999999999999998877778899999999 999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhcccccCCC
Q 012037 442 IDFALAIVSKFFGHARTRSVAEGLVFEYPRS 472 (472)
Q Consensus 442 ~d~al~li~~~~g~~~A~~va~~l~~~~~r~ 472 (472)
+||++++|+++.|.+.|+++++.|++++.|+
T Consensus 162 ~d~al~li~~l~g~~~a~~va~~l~~~~~r~ 192 (205)
T 2ab0_A 162 IDFGLKIIDLLVGREKAHEVASQLVMAAGIY 192 (205)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTTCCTTSC
T ss_pred HHHHHHHHHHhcChHHHHHHHHhcccCCCCC
Confidence 9999999999999999999999999998874
No 13
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=100.00 E-value=3.5e-37 Score=284.64 Aligned_cols=182 Identities=26% Similarity=0.436 Sum_probs=164.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC--cceecCCCcEEeecCCccccCC-----CcccEEEEcCC
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS--TQIVASQGVKIIADKSISDAAE-----SVYDLIILPGG 358 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~--~~v~s~~G~~v~~d~~l~~~~~-----~~~D~livpGG 358 (472)
+|+||+|+++|||+++|+..|+++|+++|+++++++..++ ..+++++|+++.+|..++++.. ++||+|+||||
T Consensus 3 ~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG 82 (194)
T 4gdh_A 3 HMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG 82 (194)
T ss_dssp --CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred CCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence 6899999999999999999999999999999999998643 3689999999999999988753 46999999999
Q ss_pred CcchhcccccHHHHHHHHHHHHc-CCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEc
Q 012037 359 VAGAERLQKSRILKKLLKEQKVA-GRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITS 435 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~-g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa 435 (472)
..+.+.+..++.+++||++++++ ++++++||+|+ +|+++|+|+||++|+||...+++++ ..+.++++|+|||+|||
T Consensus 83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiTs 161 (194)
T 4gdh_A 83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITS 161 (194)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEEE
T ss_pred chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEEC
Confidence 76678888999999999999865 79999999998 5677889999999999999999986 57789999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037 436 RGLANVIDFALAIVSKFFGHARTRSVAEGLVFE 468 (472)
Q Consensus 436 ~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~ 468 (472)
+|+++++||+++||++++|++.|++|++.|+|.
T Consensus 162 ~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P 194 (194)
T 4gdh_A 162 QGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 194 (194)
T ss_dssp CSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred CCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999873
No 14
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=100.00 E-value=1.7e-36 Score=275.06 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=157.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
.+++|+|++.+||++.|+..|+++|+++||+|+++|++++ ++++++|+++.+|..+++++..+||+|+||||+ ++..+
T Consensus 7 t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l 84 (177)
T 4hcj_A 7 TNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITL 84 (177)
T ss_dssp CCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGG
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHH
Confidence 3456788889999999999999999999999999999998 999999999999999999988999999999997 56778
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHH
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVID 443 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d 443 (472)
..++.+++||+++++++++|++||+|+++|+++|||+||++|+||..++++++ ..+.++++|+|||+|||+|+.+++|
T Consensus 85 ~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~ 164 (177)
T 4hcj_A 85 WDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKD 164 (177)
T ss_dssp TTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHH
T ss_pred hhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999986 5788999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 012037 444 FALAIVSKFFG 454 (472)
Q Consensus 444 ~al~li~~~~g 454 (472)
|++++|+.+-+
T Consensus 165 ~a~~lve~L~s 175 (177)
T 4hcj_A 165 FANAVVGVLNS 175 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998854
No 15
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=5.1e-37 Score=287.29 Aligned_cols=192 Identities=17% Similarity=0.211 Sum_probs=171.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhC--CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRA--GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~a--g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
+++||+||++|||+..|+..++++|+++ +|+|+++|++++ +|++++|+.+.+|..+++.+ .||+|+||||. +..
T Consensus 3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~~~~~~--~~D~livpGG~-~~~ 78 (211)
T 3mgk_A 3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-LVESSQKVRVETSLYTRDEN--IEKILFVPGGS-GTR 78 (211)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-EEECTTCCEEEEBCCCCCSS--SEEEEEECCST-HHH
T ss_pred CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-eEecCCCcEEEeccchhhCC--CCCEEEECCCc-chh
Confidence 4789999999999999999999999998 599999999986 99999999999999999876 69999999994 555
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----Cccc-cCcEEEeCCEEeCCC
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAV-KSNIHVSGEVTTSRG 235 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~-~~~~v~Dg~iiTa~g 235 (472)
.+..++.+++||+++++++|+|++||+| .++|+++|||+||++||||...+.|++ ..+. ++.+|+|||+|||+|
T Consensus 79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G-~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G 157 (211)
T 3mgk_A 79 EKVNDDNFINFIGNMVKESKYIISVCTG-SALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSG 157 (211)
T ss_dssp HHTTCHHHHHHHHHHHHHCSEEEECTTH-HHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECS
T ss_pred hhcCCHHHHHHHHHHHHcCCEEEEEchH-HHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCC
Confidence 6778999999999999999999999996 679999999999999999999998877 3454 578999999999999
Q ss_pred CCChHHHHHHHHHHHhCchhHHhhhhccccccCC---cchhhhcccc
Q 012037 236 PGTSFEFALCLVEQLFGESVAKEIGELLLMHNAD---NSLKKEEFNE 279 (472)
Q Consensus 236 ~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~---~~~~~~~~n~ 279 (472)
+.+++||+++||++++|+++|++|++.|++++.| |.||....++
T Consensus 158 ~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r~~~q~~f~~~~~~ 204 (211)
T 3mgk_A 158 VSAGIDMTLGFIEDLIGKEKALEISRSIEYFWNEDSNYDPFSKIYGE 204 (211)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCCCCSCCGGGTTC--
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcCCCCCchhHHHHhc
Confidence 9999999999999999999999999999998754 4556655544
No 16
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=100.00 E-value=1e-36 Score=284.16 Aligned_cols=190 Identities=33% Similarity=0.531 Sum_probs=175.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc--ceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL--EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~--~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
++||+|+++|||+..|+..++++|+++||++++++++++. ++++++|..+.+|..+++.++.+||+||||||..+...
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~ 81 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC 81 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence 5799999999999999999999999999999999999754 89999999999999998887678999999999645566
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCE--EeCCCCCCh
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEV--TTSRGPGTS 239 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i--iTa~g~~~~ 239 (472)
+..++.+.+||+++++++|+|++||+|++++|+++|||+||++||||.+.+.+++..+.++++|+|||+ |||+|+.++
T Consensus 82 l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~i~viTs~g~~s~ 161 (205)
T 2ab0_A 82 FRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTA 161 (205)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETTTTEEEECSGGGH
T ss_pred hccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCCcCeEECcChhhH
Confidence 778999999999999999999999997537999999999999999999999999888888899999999 999999999
Q ss_pred HHHHHHHHHHHhCchhHHhhhhccccccCCcchh
Q 012037 240 FEFALCLVEQLFGESVAKEIGELLLMHNADNSLK 273 (472)
Q Consensus 240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~ 273 (472)
+||++++|+++.|.+.|+++++.|++++.|..+.
T Consensus 162 ~d~al~li~~l~g~~~a~~va~~l~~~~~r~~~~ 195 (205)
T 2ab0_A 162 IDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYY 195 (205)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCCCC
T ss_pred HHHHHHHHHHhcChHHHHHHHHhcccCCCCCchH
Confidence 9999999999999999999999999998776553
No 17
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=100.00 E-value=3e-37 Score=286.93 Aligned_cols=185 Identities=22% Similarity=0.265 Sum_probs=161.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCC------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAG------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
.+++||+||++|||++.|+..++|+|+.++ |+|+++|.+++ +|++++|+++.+| ++++....+||+||||||
T Consensus 3 ~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG 80 (202)
T 3gra_A 3 LAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-RVLSDLGLELVAT-ELSAAALKELDLLVVCGG 80 (202)
T ss_dssp --CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-EEEBTTSCEEECE-ECCSGGGTTCSEEEEECC
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-ceEcCCCCEEECC-CcccccCCCCCEEEEeCC
Confidence 458899999999999999999999999986 99999999976 9999999999999 999865568999999999
Q ss_pred ccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----CccccCcEEEeCCEE
Q 012037 156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKSNIHVSGEVT 231 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~~~~v~Dg~ii 231 (472)
.. .... . +.+++||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++ ..+.++.+|+|||+|
T Consensus 81 ~~-~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~ii 156 (202)
T 3gra_A 81 LR-TPLK-Y-PELDRLLNDCAAHGMALGGLWNG-AWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRL 156 (202)
T ss_dssp TT-CCSC-C-TTHHHHHHHHHHHTCEEEEETTH-HHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEE
T ss_pred Cc-hhhc-c-HHHHHHHHHHHhhCCEEEEECHH-HHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEE
Confidence 53 3333 3 89999999999999999999996 679999999999999999999888865 456778999999999
Q ss_pred eCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcch
Q 012037 232 TSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL 272 (472)
Q Consensus 232 Ta~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~ 272 (472)
||+|+.+++||+++||++++|++.|+++++.|++++.+..+
T Consensus 157 Ts~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~~~ 197 (202)
T 3gra_A 157 SAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSGAREGH 197 (202)
T ss_dssp EESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC--------
T ss_pred ECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcccccc
Confidence 99999999999999999999999999999999999887655
No 18
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=100.00 E-value=5.9e-36 Score=286.85 Aligned_cols=184 Identities=16% Similarity=0.240 Sum_probs=169.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH-HhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVL-RRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l-~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
.++||+||++|||+..|+..++++| +..+|+|+++|++++ +|++++|+.+.+|.++++++. .||+||||||..+...
T Consensus 22 m~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-~V~~~~G~~i~~d~~l~~~~~-~yD~liVPGG~~g~~~ 99 (253)
T 3ewn_A 22 GDEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-PVTSDAGLAIVPTATFGTCPR-DLTVLFAPGGTDGTLA 99 (253)
T ss_dssp CCCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-CEECTTSCEECCSEETTTSCS-SCSEEEECCBSHHHHH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-eEEcCCCCEEeCCcCHHHcCC-CCCEEEECCCccchhh
Confidence 3589999999999999999999999 567999999999987 999999999999999998874 7999999999525566
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCCh
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTS 239 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~ 239 (472)
+..++.+++||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++ ..++++++|+|||+|||+|+.++
T Consensus 100 l~~~~~l~~~Lr~~~~~gk~IaaICtG-~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~ 178 (253)
T 3ewn_A 100 AASDAETLAFMADRGARAKYITSVCSG-SLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAG 178 (253)
T ss_dssp HTTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHH
T ss_pred hccCHHHHHHHHHHHHcCCEEEEEChH-HHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHH
Confidence 778999999999999999999999996 679999999999999999999999987 44678899999999999999999
Q ss_pred HHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037 240 FEFALCLVEQLFGESVAKEIGELLLMHNAD 269 (472)
Q Consensus 240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~ 269 (472)
+||+++||++++|.++|++|++.|++++.+
T Consensus 179 idlaL~lv~~l~G~~~A~~va~~l~~~~~~ 208 (253)
T 3ewn_A 179 LDFGLSMVAELRDQTYAECAQLMSEYDPDP 208 (253)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence 999999999999999999999999998644
No 19
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=100.00 E-value=2.8e-36 Score=279.52 Aligned_cols=185 Identities=36% Similarity=0.557 Sum_probs=168.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCC-CCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC-SHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~-~~~~~D~vivpGG~~~~~~l 162 (472)
++||+|+++|||+..|+..++++|+++||++++++++++.++++++|..+.+|.++++. ++.+||+|+||||..+...+
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l 82 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL 82 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence 57999999999999999999999999999999999987658999999999999999887 55689999999995445557
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C--ccccCcEEEeCCEEeCCCCCCh
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F--WAVKSNIHVSGEVTTSRGPGTS 239 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~--~~~~~~~v~Dg~iiTa~g~~~~ 239 (472)
..++.+++||+++++++|+|++||+| .++|+++|+|+||++||||...+.|++ + ++.++.+|+|||+|||+|+.++
T Consensus 83 ~~~~~~~~~l~~~~~~gk~i~aiC~G-~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~ 161 (197)
T 2rk3_A 83 SESAAVKEILKEQENRKGLIATICAG-PTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTS 161 (197)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGH
T ss_pred hhCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHH
Confidence 78999999999999999999999996 569999999999999999999999987 4 4778899999999999999999
Q ss_pred HHHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037 240 FEFALCLVEQLFGESVAKEIGELLLMHNAD 269 (472)
Q Consensus 240 ~dlal~li~~~~g~~~a~~va~~l~~~~~~ 269 (472)
+||++++|+++.|.+.|+++++.|++++-.
T Consensus 162 ~d~al~li~~l~g~~~a~~va~~~~~~~~~ 191 (197)
T 2rk3_A 162 FEFALAIVEALNGKEVAAQVKAPLVLKDLE 191 (197)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHGGGTC----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999987644
No 20
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=100.00 E-value=5.1e-36 Score=284.18 Aligned_cols=181 Identities=27% Similarity=0.333 Sum_probs=168.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
++||+||++|||+..|+..++++|++ .+|+|+++|++++ +|++++|+.+.+|.++++++ +||+|+||||. +...+
T Consensus 5 ~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~V~~~~G~~v~~d~~l~~~~--~~D~livpGG~-g~~~~ 80 (231)
T 3noq_A 5 AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-PVVASSGLVLQATTSFADCP--PLDVICIPGGT-GVGAL 80 (231)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-EEECTTSCEEEECEETTTCC--CCSEEEECCST-THHHH
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-cEEcCCCCEEecccChhHCC--cCCEEEECCCC-Chhhh
Confidence 58999999999999999999999999 7999999999986 99999999999999999886 79999999994 56667
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChH
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF 240 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~ 240 (472)
..++.+++||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++ ..++++++|+|||+|||+|+.+++
T Consensus 81 ~~~~~l~~~lr~~~~~g~~v~aiC~G-~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~ 159 (231)
T 3noq_A 81 MEDPQALAFIRQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGI 159 (231)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHH
T ss_pred ccCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHH
Confidence 78999999999999999999999996 679999999999999999999999976 446788899999999999999999
Q ss_pred HHHHHHHHHHhCchhHHhhhhccccccCC
Q 012037 241 EFALCLVEQLFGESVAKEIGELLLMHNAD 269 (472)
Q Consensus 241 dlal~li~~~~g~~~a~~va~~l~~~~~~ 269 (472)
||+++||++++|.+.|++|++.|++++.+
T Consensus 160 d~aL~li~~~~G~~~A~~va~~l~~~~~~ 188 (231)
T 3noq_A 160 DFALTLAAELFDAATAQRVQLQLEYAPAP 188 (231)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCHHHHHHHHHhceeCCCC
Confidence 99999999999999999999999998643
No 21
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=100.00 E-value=1.8e-36 Score=279.84 Aligned_cols=183 Identities=25% Similarity=0.338 Sum_probs=165.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCC--CcceeccCCceeeeCCCcCCCCC-----CcccEEEEcC
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEP--QLEVEASSGTRLVADTSISNCSH-----QVFDLIALPG 154 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~--g~~v~~~~G~~v~~d~~~~~~~~-----~~~D~vivpG 154 (472)
..|+||+|+++|||++.|+..|+++|+++|+++++++... +..+++++|.++.+|..+++++. .+||+|+|||
T Consensus 2 s~M~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPG 81 (194)
T 4gdh_A 2 SHMVKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPG 81 (194)
T ss_dssp ---CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECC
T ss_pred CCCCEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECC
Confidence 4689999999999999999999999999999999998754 23689999999999999988764 3599999999
Q ss_pred CccccccccCChHHHHHHHHHHhc-CCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEE
Q 012037 155 GMPGSVRLRDCEILKKITSKQAEE-KRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVT 231 (472)
Q Consensus 155 G~~~~~~l~~~~~~~~~l~~~~~~-~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~ii 231 (472)
|..+...+.+++.+.+||++++++ +|+|+++|+| . +|+++|+|+||++||||.+.+.|++ +.|+++++|+|||+|
T Consensus 82 G~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g-~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~ii 159 (194)
T 4gdh_A 82 GGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAG-T-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLI 159 (194)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGG-G-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEE
T ss_pred CchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccc-c-cchhhceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEE
Confidence 976778888999999999999865 7999999996 4 5788899999999999999999987 688999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037 232 TSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMH 266 (472)
Q Consensus 232 Ta~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~ 266 (472)
||+|+.+++||+++||++++|++.|++|++.|+++
T Consensus 160 Ts~g~~~~~d~al~lve~l~G~~~a~~va~~l~~P 194 (194)
T 4gdh_A 160 TSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSMP 194 (194)
T ss_dssp EECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTCC
T ss_pred ECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999874
No 22
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.9e-36 Score=280.29 Aligned_cols=186 Identities=13% Similarity=0.110 Sum_probs=163.0
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC-------CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEc
Q 012037 81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG-------AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALP 153 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag-------~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivp 153 (472)
+.+++||+||++|||++.|+..++|+|+.++ |+|+++|.+++ +|++++|+++.+|..+++.+ +||+||||
T Consensus 5 ~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-~v~~~~G~~v~~d~~~~~~~--~~D~livp 81 (209)
T 3er6_A 5 NKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-PLIGRGGISVQPTAQWQSFD--FTNILIIG 81 (209)
T ss_dssp --CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-CEEETTTEEEECSSCGGGCS--CCSEEEEC
T ss_pred CCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-ceecCCCeEEeCCcCccccC--CCCEEEEC
Confidence 3458899999999999999999999999874 99999999976 99999999999999999875 79999999
Q ss_pred CCccccc-cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC----CccccC-cEEEe
Q 012037 154 GGMPGSV-RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT----FWAVKS-NIHVS 227 (472)
Q Consensus 154 GG~~~~~-~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~----~~~~~~-~~v~D 227 (472)
||..... .+..++.+++||+++++++++|++||+| .++|+++|||+||++||||.+.+.|++ .++.++ .+|+|
T Consensus 82 Gg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~D 160 (209)
T 3er6_A 82 SIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTG-IFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALID 160 (209)
T ss_dssp CCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEE
T ss_pred CCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEe
Confidence 9952222 2467999999999999999999999996 679999999999999999998888865 445554 69999
Q ss_pred CCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCc
Q 012037 228 GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN 270 (472)
Q Consensus 228 g~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~ 270 (472)
||+|||+|+.+++||+++||++++|+++|+++++.|++++...
T Consensus 161 g~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~~~~ 203 (209)
T 3er6_A 161 GNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIESEG 203 (209)
T ss_dssp TTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC-----
T ss_pred CCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcccc
Confidence 9999999999999999999999999999999999999987554
No 23
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=100.00 E-value=8.8e-36 Score=282.74 Aligned_cols=180 Identities=20% Similarity=0.363 Sum_probs=165.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
+++||+|+++|||+++|+..++|+|+.++ |+++++| +++ +++++.|+.+.+|..+++. .+||+||||||..+..
T Consensus 19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~ 94 (236)
T 3bhn_A 19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIP 94 (236)
T ss_dssp -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHH
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccCHh
Confidence 46799999999999999999999999976 8999999 887 9999999999999999885 7899999999942455
Q ss_pred cccccHHHHHHHHHHHHcCC-eEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhh
Q 012037 364 RLQKSRILKKLLKEQKVAGR-IYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLAN 440 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~-~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~ 440 (472)
.+..++.+++|| ++++++ +|++||+|+++|+++|||+||++|+||...+.|++ ..+.++.+|+|||+|||+|+.+
T Consensus 95 ~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~a 172 (236)
T 3bhn_A 95 AALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLS 172 (236)
T ss_dssp HHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGG
T ss_pred hhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHHH
Confidence 577899999999 566666 99999999999999999999999999999999986 4668999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 441 VIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 441 ~~d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
++||++++|++++|++.|+++++.|++++.|
T Consensus 173 ~~dlal~lIe~l~G~~~A~~va~~l~~~~~~ 203 (236)
T 3bhn_A 173 LLYLVGWLAERLFDSVKRKQIQNQLIPAGQM 203 (236)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHTTTSCTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999998765
No 24
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=100.00 E-value=8.2e-36 Score=279.44 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=164.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH--------hCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILR--------RAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~--------~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
|+||+|+++|||+++|+..++|+|+ +++|+|+++|.+++ +|++++|+++.+|..+++++..+||+||||||
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG 83 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPGG 83 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECCC
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECCC
Confidence 6899999999999999999999999 67899999999998 99999999999999999987679999999999
Q ss_pred CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccCh-hhHhhhhc-----ceecCCcEEECCCE
Q 012037 359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHP-SVIGKLTN-----EVVNGTKVVVDGKV 432 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~-~~~~~l~~-----~~~~~~~vv~dg~i 432 (472)
.. . .+..++.+++||+++++++++|++||+|+++|+++|||+||++|+|| ...+.+++ .++.++.+|+|||+
T Consensus 84 ~~-~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~i 161 (212)
T 3efe_A 84 TT-W-SEEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANL 161 (212)
T ss_dssp SC-T-TSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTE
T ss_pred Cc-c-ccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCE
Confidence 73 3 35688999999999999999999999999999999999999999996 77677754 35788999999999
Q ss_pred EEcCChhhHHHHHHHHHHHhcCHHHHHHHHhhcccccCC
Q 012037 433 ITSRGLANVIDFALAIVSKFFGHARTRSVAEGLVFEYPR 471 (472)
Q Consensus 433 iTa~g~~~~~d~al~li~~~~g~~~A~~va~~l~~~~~r 471 (472)
|||+|+. ++||++++|+++.|. .|.++++.+++.+.+
T Consensus 162 iTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g 198 (212)
T 3efe_A 162 VTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTH 198 (212)
T ss_dssp EEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHC
T ss_pred EECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCC
Confidence 9999996 899999999999997 999999999987554
No 25
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=100.00 E-value=1.7e-35 Score=268.47 Aligned_cols=167 Identities=20% Similarity=0.252 Sum_probs=157.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
.+++|.||+.+||++.|+..|+++|+++|++|+++|+++| ++++++|.++.+|.+++++++.+||+|+||||+ +...+
T Consensus 7 t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l 84 (177)
T 4hcj_A 7 TNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-TAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITL 84 (177)
T ss_dssp CCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-EEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGG
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-eEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHH
Confidence 4567888999999999999999999999999999999987 999999999999999999998899999999995 66778
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChH
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSF 240 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~ 240 (472)
..++.+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+++ ..|+++++|+|||+|||+|+.+++
T Consensus 85 ~~~~~~~~~l~~~~~~~k~iaaIC~g~-~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~ 163 (177)
T 4hcj_A 85 WDDWRTQGLAKLFLDNQKIVAGIGSGV-VIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSK 163 (177)
T ss_dssp TTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHH
T ss_pred hhCHHHHHHHHHHHHhCCEEEEecccH-HHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHH
Confidence 899999999999999999999999974 68999999999999999999999887 788999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 012037 241 EFALCLVEQLFG 252 (472)
Q Consensus 241 dlal~li~~~~g 252 (472)
||++++|+.+.+
T Consensus 164 ~~a~~lve~L~s 175 (177)
T 4hcj_A 164 DFANAVVGVLNS 175 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
No 26
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=100.00 E-value=5.7e-35 Score=263.73 Aligned_cols=164 Identities=21% Similarity=0.367 Sum_probs=154.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.+||+|+++|||++.|+..++++|+.+||+++++|++++ ++++++|+.+.++..+++++..+||+|+||||. +...+.
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~ 79 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVR 79 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhc
Confidence 479999999999999999999999999999999999998 999999999999999999876789999999997 566677
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhhHHHH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLANVIDF 444 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~~~d~ 444 (472)
.++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ ..+.++.+|+|||+|||+|+.+++||
T Consensus 80 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d~ 159 (168)
T 3l18_A 80 LNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAW 159 (168)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHH
T ss_pred cCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999987 45678899999999999999999999
Q ss_pred HHHHHHHh
Q 012037 445 ALAIVSKF 452 (472)
Q Consensus 445 al~li~~~ 452 (472)
++++|+++
T Consensus 160 ~l~li~~l 167 (168)
T 3l18_A 160 MREFVKLL 167 (168)
T ss_dssp HHHHGGGC
T ss_pred HHHHHHhh
Confidence 99999876
No 27
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=100.00 E-value=5.6e-35 Score=273.75 Aligned_cols=189 Identities=17% Similarity=0.201 Sum_probs=168.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHH--------hCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLR--------RAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~--------~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
.|+||+|+++|||++.|+..++++|+ +.+|+|+++|++++ +|++++|+.+.+|.+++++++.+||+|+|||
T Consensus 4 ~m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-~v~~~~G~~i~~d~~~~~~~~~~~D~livpG 82 (212)
T 3efe_A 4 QTKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-MITTMGGLRIKPDISLDECTLESKDLLILPG 82 (212)
T ss_dssp -CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-CEECTTCCEECCSEEGGGCCCCTTCEEEECC
T ss_pred cccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-eEEcCCCCEEecCcCHHHCCccCCCEEEECC
Confidence 47899999999999999999999999 77899999999987 9999999999999999999888999999999
Q ss_pred CccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCc-chhccCCC-----CccccCcEEEeC
Q 012037 155 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHP-AFTDKLPT-----FWAVKSNIHVSG 228 (472)
Q Consensus 155 G~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~-~~~~~l~~-----~~~~~~~~v~Dg 228 (472)
|. +. .+..++.+++||+++++++|+|++||+| .++|+++|||+||++|||| .+.+.|++ ..+.++.+|+||
T Consensus 83 G~-~~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G-~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg 159 (212)
T 3efe_A 83 GT-TW-SEEIHQPILERIGQALKIGTIVAAICGA-TDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDA 159 (212)
T ss_dssp CS-CT-TSGGGHHHHHHHHHHHHHTCEEEEETHH-HHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEET
T ss_pred CC-cc-ccccCHHHHHHHHHHHHCCCEEEEEcHH-HHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCCCcEEEEC
Confidence 95 33 3578899999999999999999999996 6799999999999999996 67677654 246788999999
Q ss_pred CEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcch-hhhcc
Q 012037 229 EVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL-KKEEF 277 (472)
Q Consensus 229 ~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~-~~~~~ 277 (472)
|+|||+|+. ++||+++||+++.|. .|++|++++.+.+.+.++ |++-+
T Consensus 160 ~iiTs~G~~-~~d~al~li~~l~g~-~a~~va~~~~~~~~g~~~~~~~~~ 207 (212)
T 3efe_A 160 NLVTASGIA-PLEFAMEVLKKIDVF-TLDALHSWYNLNKTHKPEYFFQLM 207 (212)
T ss_dssp TEEEECTTC-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHCCTHHHHHHH
T ss_pred CEEECCCch-HHHHHHHHHHHhcCC-CHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999985 999999999999997 999999999998766555 44433
No 28
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=100.00 E-value=1e-34 Score=267.42 Aligned_cols=173 Identities=27% Similarity=0.366 Sum_probs=157.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceec-----CCCcEEeecCCccccCCCcccEEEEcCCCc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVA-----SQGVKIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s-----~~G~~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
.++||+|+++|||++.|+..++++|+.+||++++++++++ ++++ +.|+.+.++..+++++..+||+||||||..
T Consensus 8 ~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 86 (190)
T 2vrn_A 8 TGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV 86 (190)
T ss_dssp TTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence 3579999999999999999999999999999999999998 8887 779999999999988767899999999974
Q ss_pred chhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCCh
Q 012037 361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGL 438 (472)
Q Consensus 361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~ 438 (472)
+...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ ..+.+..+++|||+|||+|+
T Consensus 87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g~ 166 (190)
T 2vrn_A 87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKP 166 (190)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSSG
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCCh
Confidence 4556678999999999999999999999999999999999999999999999999986 45566677889999999999
Q ss_pred hhHHHHHHHHHHHh-cCHHHHH
Q 012037 439 ANVIDFALAIVSKF-FGHARTR 459 (472)
Q Consensus 439 ~~~~d~al~li~~~-~g~~~A~ 459 (472)
.+++||++++|+++ .|++.|+
T Consensus 167 ~s~~~~~l~li~~l~~g~~~a~ 188 (190)
T 2vrn_A 167 DDLPAFNKKIVEEFAEGDHSSR 188 (190)
T ss_dssp GGHHHHHHHHHHHHHHCCCGGG
T ss_pred hhHHHHHHHHHHHHhccccccc
Confidence 99999999999999 8887654
No 29
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=100.00 E-value=2.9e-34 Score=287.05 Aligned_cols=179 Identities=25% Similarity=0.404 Sum_probs=165.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc-eecCCCc-EEeecCCccccCCCcccEEEEcCCCcch
Q 012037 285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGV-KIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~-v~s~~G~-~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
.+|+||+|+++|||+++|+..++++|+.+||+|+++|++++ + |++++|+ .+.+|..+++++..+||+||||||. +.
T Consensus 8 ~~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~ 85 (365)
T 3fse_A 8 SGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-AP 85 (365)
T ss_dssp ---CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HH
T ss_pred CCceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-ch
Confidence 35789999999999999999999999999999999999998 7 9999999 9999999999876789999999998 56
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCCEEEcCChhh
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGKVITSRGLAN 440 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~iiTa~g~~~ 440 (472)
..+..++.+++||+++++++++|++||+|+++||++|||+||++|+||...+.|++ ..+.++.+|+|||+|||+|+.+
T Consensus 86 ~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a 165 (365)
T 3fse_A 86 DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGD 165 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGG
T ss_pred hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHH
Confidence 66778999999999999999999999999999999999999999999999999986 5667889999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhc
Q 012037 441 VIDFALAIVSKFFGHARTRSVAEGL 465 (472)
Q Consensus 441 ~~d~al~li~~~~g~~~A~~va~~l 465 (472)
++||++++|+++.|.+.|+++|+..
T Consensus 166 ~~d~al~lIe~L~g~~~A~~lA~~~ 190 (365)
T 3fse_A 166 LAIFTTAILSRLGYGGKDAALPDEK 190 (365)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCCCTT
T ss_pred HHHHHHHHHHHhcCchHHHHHhhhh
Confidence 9999999999999998888877654
No 30
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=100.00 E-value=4.1e-34 Score=263.38 Aligned_cols=174 Identities=23% Similarity=0.299 Sum_probs=158.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec-----cCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA-----SSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~-----~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
+.++||+||++|||+..|+..++++|+++||++++++++++ ++++ +.|..+.+|.++++.++.+||+||||||.
T Consensus 7 ~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 85 (190)
T 2vrn_A 7 LTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-EIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGT 85 (190)
T ss_dssp CTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-EEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-ccccccccccCCcEEeCCCChhhCChhhCCEEEECCCc
Confidence 45789999999999999999999999999999999999987 8887 77999999999998877789999999995
Q ss_pred cccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCC
Q 012037 157 PGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSR 234 (472)
Q Consensus 157 ~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~ 234 (472)
.+...+..++++++||+++++++|+|+++|+| .++|+++|||+||++||||...+.|++ ..++++.+++|||+|||+
T Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G-~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~ 164 (190)
T 2vrn_A 86 VNPDKLRLEEGAMKFVRDMYDAGKPIAAICHG-PWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSR 164 (190)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CT-THHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECS
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEEEECHh-HHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcC
Confidence 45556778999999999999999999999996 569999999999999999999998877 677777888899999999
Q ss_pred CCCChHHHHHHHHHHH-hCchhHH
Q 012037 235 GPGTSFEFALCLVEQL-FGESVAK 257 (472)
Q Consensus 235 g~~~~~dlal~li~~~-~g~~~a~ 257 (472)
|+.++.||++++|+++ .|++.|+
T Consensus 165 g~~s~~~~~l~li~~l~~g~~~a~ 188 (190)
T 2vrn_A 165 KPDDLPAFNKKIVEEFAEGDHSSR 188 (190)
T ss_dssp SGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred ChhhHHHHHHHHHHHHhccccccc
Confidence 9999999999999999 8988775
No 31
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=100.00 E-value=2.1e-33 Score=259.30 Aligned_cols=171 Identities=21% Similarity=0.323 Sum_probs=157.5
Q ss_pred ccccCCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc-eecCCCc-EEeecCCccccCCCcccEEEEcCC
Q 012037 281 EWFFDRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQ-IVASQGV-KIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 281 ~~~~~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~-v~s~~G~-~v~~d~~l~~~~~~~~D~livpGG 358 (472)
.|...+++||+|+++|||++.|+..++++|+++||++++++++++ + +++++|+ .+.++..+++++..+||+||||||
T Consensus 17 ~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 17 YKKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp TTTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred ehhhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 444457789999999999999999999999999999999999998 7 9999999 999999999886678999999999
Q ss_pred CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecCCcEEECCC-EEEc
Q 012037 359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNGTKVVVDGK-VITS 435 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~vv~dg~-iiTa 435 (472)
. +...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ ..+.++.+|+||| +|||
T Consensus 96 ~-~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs 174 (193)
T 1oi4_A 96 H-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTS 174 (193)
T ss_dssp T-HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEE
T ss_pred c-CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEEC
Confidence 6 5666777899999999999999999999999999999999999999999999999986 4667778899999 9999
Q ss_pred CChhhHHHHHHHHHHHhc
Q 012037 436 RGLANVIDFALAIVSKFF 453 (472)
Q Consensus 436 ~g~~~~~d~al~li~~~~ 453 (472)
+|+.+++||++++|+++.
T Consensus 175 ~g~~~~~d~~l~li~~l~ 192 (193)
T 1oi4_A 175 RTPDDLPAFNREALRLLG 192 (193)
T ss_dssp SSGGGHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHHHhh
Confidence 999999999999999874
No 32
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=100.00 E-value=4.7e-34 Score=262.57 Aligned_cols=176 Identities=22% Similarity=0.290 Sum_probs=158.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
|+||+|+++|||++.|+..++++|++ ++|+++++|++++ ++++++|+.+.++..+++++..+||+||||||.. . ..
T Consensus 1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~-~~ 77 (188)
T 2fex_A 1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-W-EK 77 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-H-HH
T ss_pred CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-c-cc
Confidence 57999999999999999999999999 9999999999998 9999999999999999998666899999999973 3 24
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc-----ceecCCc-EEECCCEEEcCChh
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN-----EVVNGTK-VVVDGKVITSRGLA 439 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~-----~~~~~~~-vv~dg~iiTa~g~~ 439 (472)
..++.+++||+++++++++|++||+|+++|+++|||+||++|+||.....+++ ..+.++. +|+|||+|||+|+.
T Consensus 78 ~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~ 157 (188)
T 2fex_A 78 GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA 157 (188)
T ss_dssp TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTTC
T ss_pred cccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCcc
Confidence 57889999999999999999999999999999999999999999987665543 2566778 99999999999996
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHhhcccc
Q 012037 440 NVIDFALAIVSKFFGHARTRSVAEGLVFE 468 (472)
Q Consensus 440 ~~~d~al~li~~~~g~~~A~~va~~l~~~ 468 (472)
++||++++|+++.|.+.+. ++.+.|.
T Consensus 158 -~~d~al~lv~~l~~~~~~~--~~~~~~~ 183 (188)
T 2fex_A 158 -PVSFAVEILKSLGLFGPEA--EAELQIF 183 (188)
T ss_dssp -HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred -HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence 8999999999999998887 6666553
No 33
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=100.00 E-value=3.4e-34 Score=258.63 Aligned_cols=164 Identities=23% Similarity=0.334 Sum_probs=153.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
++||+|+++|||+..|+..++++|+++||+++++|++++ ++++++|..+.+|.+++++++.+||+|+||||. +...+.
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~ 79 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVR 79 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-EEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-EEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhc
Confidence 689999999999999999999999999999999999987 999999999999999999887789999999995 555677
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCCCChHH
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGPGTSFE 241 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~~~~~d 241 (472)
.++.+.+||+++++++|+|+++|+| .++|+++|||+||++||||...+.|++ ..++++.+|+|||+|||+|+.++.|
T Consensus 80 ~~~~l~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d 158 (168)
T 3l18_A 80 LNEKAVMITRRMFEDDKPVASICHG-PQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYA 158 (168)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHH
T ss_pred cCHHHHHHHHHHHHCCCEEEEECHh-HHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHH
Confidence 8999999999999999999999996 668999999999999999999999987 4677889999999999999999999
Q ss_pred HHHHHHHHH
Q 012037 242 FALCLVEQL 250 (472)
Q Consensus 242 lal~li~~~ 250 (472)
|++++|+++
T Consensus 159 ~~l~li~~l 167 (168)
T 3l18_A 159 WMREFVKLL 167 (168)
T ss_dssp HHHHHGGGC
T ss_pred HHHHHHHhh
Confidence 999999875
No 34
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=5.2e-34 Score=265.58 Aligned_cols=175 Identities=18% Similarity=0.241 Sum_probs=155.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
|+||+|+++|||+++|+..++++|+++ +|+++++|++++ |++++|+++.+|..++++ +.+||+|+||||. +...
T Consensus 3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~-~~~~- 77 (206)
T 3f5d_A 3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGD-SWSN- 77 (206)
T ss_dssp CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBS-CCCC-
T ss_pred ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCC-Chhh-
Confidence 679999999999999999999999998 999999999985 999999999999999987 3589999999997 3443
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHh-hhh----cceecCCcEEECCCEEEcCChhh
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIG-KLT----NEVVNGTKVVVDGKVITSRGLAN 440 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~-~l~----~~~~~~~~vv~dg~iiTa~g~~~ 440 (472)
.++.+++||+++++++++|++||+|+++||++|||+||++|+||...- .++ ...+.++.+|+|||+|||+|+.
T Consensus 78 -~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a- 155 (206)
T 3f5d_A 78 -DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA- 155 (206)
T ss_dssp -CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC-
T ss_pred -cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch-
Confidence 899999999999999999999999999999999999999999994221 121 2456788999999999999986
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhccccc
Q 012037 441 VIDFALAIVSKFFGHARTRSVAEGLVFEY 469 (472)
Q Consensus 441 ~~d~al~li~~~~g~~~A~~va~~l~~~~ 469 (472)
++||++++|+++ +.+.|+++++.|++.+
T Consensus 156 ~id~al~li~~l-~~~~a~~va~~~~~~~ 183 (206)
T 3f5d_A 156 PIEFTNLILEMI-DFDTPENIEKMMYMNR 183 (206)
T ss_dssp HHHHHHHHHHHT-TCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcchHHHHHHHhhhhh
Confidence 899999999975 5789999999998854
No 35
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=100.00 E-value=3.2e-34 Score=272.05 Aligned_cols=185 Identities=21% Similarity=0.237 Sum_probs=164.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
..+++||+||++|||+..|+..++++|+.++ |++++++ +++ +|++++|..+.+|..+++. .+||+||||||+.+
T Consensus 17 ~~~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g 92 (236)
T 3bhn_A 17 FQGMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-EHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRG 92 (236)
T ss_dssp ---CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-EEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTH
T ss_pred cCCCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-cEEecCCcEEecCcccccc--cCCCEEEEcCCccC
Confidence 4567899999999999999999999999976 8999999 876 9999999999999999874 48999999999434
Q ss_pred cccccCChHHHHHHHHHHhcCC-eEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCC
Q 012037 159 SVRLRDCEILKKITSKQAEEKR-LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRG 235 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k-~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g 235 (472)
...+..++.+++|| ++++++ +|++||+| .++|+++|||+||++||||...+.|++ ..+.++.+|+|||+|||+|
T Consensus 93 ~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G-~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G 169 (236)
T 3bhn_A 93 IPAALQDENFMSAL--KLDPSRQLIGSICAG-SFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGG 169 (236)
T ss_dssp HHHHHTCHHHHHHC--CCCTTTCEEEEETTH-HHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECS
T ss_pred HhhhccCHHHHHHH--HhCCCCCEEEEEcHH-HHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCC
Confidence 55577899999999 777777 99999996 669999999999999999999999987 4567889999999999999
Q ss_pred CCChHHHHHHHHHHHhCchhHHhhhhccccccCCcch
Q 012037 236 PGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNSL 272 (472)
Q Consensus 236 ~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~ 272 (472)
+.+++||++++|++++|.+.|+++++.|++++.++..
T Consensus 170 ~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~~~~~~ 206 (236)
T 3bhn_A 170 CLSLLYLVGWLAERLFDSVKRKQIQNQLIPAGQMEIF 206 (236)
T ss_dssp GGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcccCCCCchh
Confidence 9999999999999999999999999999998766544
No 36
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=6.4e-33 Score=258.21 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=159.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|+||+|+++|||++.|+..++++|+++ +|+++++|++++ |++++|+.+.+|.++++. +.+||+|+||||. +...
T Consensus 3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~--V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~-~~~~- 77 (206)
T 3f5d_A 3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGD-SWSN- 77 (206)
T ss_dssp CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSE--EEBTTSCEEECSEETTSS-CSCCSEEEECCBS-CCCC-
T ss_pred ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCC--EEecCCcEEecCcChhhC-CcCCCEEEEcCCC-Chhh-
Confidence 789999999999999999999999998 999999999964 999999999999999987 4689999999995 4443
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchh-ccCC----CCccccCcEEEeCCEEeCCCCC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFT-DKLP----TFWAVKSNIHVSGEVTTSRGPG 237 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~-~~l~----~~~~~~~~~v~Dg~iiTa~g~~ 237 (472)
.++.+++||+++++++|+|++||+| .++|+++|||+||++||||... ..+. ...++++++|+|||+|||+|+.
T Consensus 78 -~~~~l~~~l~~~~~~gk~iaaiC~G-~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a 155 (206)
T 3f5d_A 78 -DNKKLLHFVKTAFQKNIPIAAICGA-VDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA 155 (206)
T ss_dssp -CCHHHHHHHHHHHHTTCCEEEETHH-HHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC
T ss_pred -cCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch
Confidence 8899999999999999999999996 5799999999999999999421 1222 2567888999999999999986
Q ss_pred ChHHHHHHHHHHHhCchhHHhhhhccccccCCcchh
Q 012037 238 TSFEFALCLVEQLFGESVAKEIGELLLMHNADNSLK 273 (472)
Q Consensus 238 ~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~~~ 273 (472)
++||+++||++ ++.+.|++|++.|++.+..-.++
T Consensus 156 -~id~al~li~~-l~~~~a~~va~~~~~~~~g~~~~ 189 (206)
T 3f5d_A 156 -PIEFTNLILEM-IDFDTPENIEKMMYMNRYGFYHF 189 (206)
T ss_dssp -HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHCHHHH
T ss_pred -HHHHHHHHHHH-hCcchHHHHHHHhhhhhccchhh
Confidence 99999999996 56789999999999987666554
No 37
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=100.00 E-value=2.8e-33 Score=279.91 Aligned_cols=181 Identities=23% Similarity=0.305 Sum_probs=165.2
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcc-eeccCCc-eeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE-VEASSGT-RLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~-v~~~~G~-~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
...++||+||++|||+..|+..++++|+++||+|+++|++++ + |++++|. .+.+|..++++++.+||+||||||. +
T Consensus 7 ~~~mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g-~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g 84 (365)
T 3fse_A 7 NSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN-EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-A 84 (365)
T ss_dssp ----CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSS-CCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-H
T ss_pred CCCceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCC-ceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-c
Confidence 356899999999999999999999999999999999999987 6 9999999 9999999999887789999999995 5
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCCEEeCCCC
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGEVTTSRGP 236 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTa~g~ 236 (472)
...+..++.+.+||+++++++|+|++||+| .++|+++|||+||++||||.+.+.|++ ..++++.+|+|||+|||+|+
T Consensus 85 ~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G-~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~ 163 (365)
T 3fse_A 85 PDKMRRNPNTVRFVQEAMEQGKLVAAVCHG-PQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREP 163 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCEEEEETTT-HHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSG
T ss_pred hhhccCCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCH
Confidence 556778999999999999999999999996 679999999999999999999999886 67888899999999999999
Q ss_pred CChHHHHHHHHHHHhCchhHHhhhhccc
Q 012037 237 GTSFEFALCLVEQLFGESVAKEIGELLL 264 (472)
Q Consensus 237 ~~~~dlal~li~~~~g~~~a~~va~~l~ 264 (472)
.+++||++++|+++.|.+.|+++++..-
T Consensus 164 ~a~~d~al~lIe~L~g~~~A~~lA~~~~ 191 (365)
T 3fse_A 164 GDLAIFTTAILSRLGYGGKDAALPDEKD 191 (365)
T ss_dssp GGHHHHHHHHHHHTTCCCSSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhhhhh
Confidence 9999999999999999999988886543
No 38
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=99.98 E-value=1.6e-32 Score=252.34 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=157.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|+||+|+++|||++.|+..++++|++ .+|+++++|++++ +|++++|..+.+|.++++.++.+||+|+||||. +. .+
T Consensus 1 m~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~-~~-~~ 77 (188)
T 2fex_A 1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-PVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SW-EK 77 (188)
T ss_dssp CCEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-CEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HH-HH
T ss_pred CcEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-ceeeCCCcEEeccccHHHCCcccCCEEEECCCC-cc-cc
Confidence 57999999999999999999999999 9999999999987 999999999999999999887789999999995 22 24
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-C----ccccCc-EEEeCCEEeCCCC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-F----WAVKSN-IHVSGEVTTSRGP 236 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~----~~~~~~-~v~Dg~iiTa~g~ 236 (472)
..++.+.+||+++++++|+|++||+| .++|+++|||+||++||||.....+++ + .+.++. +|+|||+|||+|+
T Consensus 78 ~~~~~l~~~l~~~~~~~k~i~aiC~G-~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~ 156 (188)
T 2fex_A 78 GTAADLGGLVKRFRDRDRLVAGICAA-ASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS 156 (188)
T ss_dssp TCCCCCHHHHHHHHHTTCEEEEETHH-HHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT
T ss_pred cccHHHHHHHHHHHHCCCEEEEECHH-HHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCc
Confidence 57899999999999999999999996 568999999999999999987766554 2 467788 9999999999998
Q ss_pred CChHHHHHHHHHHHhCchhHHhhhhccccc
Q 012037 237 GTSFEFALCLVEQLFGESVAKEIGELLLMH 266 (472)
Q Consensus 237 ~~~~dlal~li~~~~g~~~a~~va~~l~~~ 266 (472)
. ++||++++|+++.|.+.++ ++.+.+.
T Consensus 157 ~-~~d~al~lv~~l~~~~~~~--~~~~~~~ 183 (188)
T 2fex_A 157 A-PVSFAVEILKSLGLFGPEA--EAELQIF 183 (188)
T ss_dssp C-HHHHHHHHHHHTTCCSHHH--HHHHGGG
T ss_pred c-HHHHHHHHHHHccCCCHHH--HHHHHHH
Confidence 5 8999999999999999886 6555544
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=99.98 E-value=3.3e-32 Score=251.28 Aligned_cols=167 Identities=22% Similarity=0.247 Sum_probs=154.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcc-eeccCCc-eeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE-VEASSGT-RLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~-v~~~~G~-~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
..++||+|+++|||+..|+..++++|+++||++++++++++ + |++++|. .+.+|..+++.+..+||+|+||||. +.
T Consensus 21 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~-~~ 98 (193)
T 1oi4_A 21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SP 98 (193)
T ss_dssp TCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-CEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HH
T ss_pred ccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-cceecCCCCeEEECCCChHHCCcccCCEEEECCCc-CH
Confidence 45789999999999999999999999999999999999987 7 9999999 9999999998876789999999994 55
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC--CccccCcEEEeCC-EEeCCCC
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT--FWAVKSNIHVSGE-VTTSRGP 236 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~-iiTa~g~ 236 (472)
..+..++.+.+||+++++++|+|++||+| .++|+++|||+||++||||...+.|++ ..++++++|+||| +|||+|+
T Consensus 99 ~~l~~~~~l~~~l~~~~~~gk~i~aIC~G-~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~g~ 177 (193)
T 1oi4_A 99 DYLRGDNRFVTFTRDFVNSGKPVFAICHG-PQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTP 177 (193)
T ss_dssp HHHTTSHHHHHHHHHHHHTTCCEEEETTT-HHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSG
T ss_pred HHhhhCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECCCc
Confidence 66777899999999999999999999996 669999999999999999999999876 6788888999999 9999999
Q ss_pred CChHHHHHHHHHHHh
Q 012037 237 GTSFEFALCLVEQLF 251 (472)
Q Consensus 237 ~~~~dlal~li~~~~ 251 (472)
.++.||++++|+++.
T Consensus 178 ~~~~d~~l~li~~l~ 192 (193)
T 1oi4_A 178 DDLPAFNREALRLLG 192 (193)
T ss_dssp GGHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999999874
No 40
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.98 E-value=3.5e-32 Score=247.10 Aligned_cols=160 Identities=19% Similarity=0.328 Sum_probs=145.9
Q ss_pred CCEEEEEeCC---C---CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCcccc--CCCcccEEEEcCC
Q 012037 287 MPRVLIPIAN---G---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDA--AESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~---g---~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~--~~~~~D~livpGG 358 (472)
++||+|+++| | |+++|+.. +++|+++++|.+++.++++++|+++.++..++++ +..+||+||||||
T Consensus 2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG 75 (175)
T 3cne_A 2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG 75 (175)
T ss_dssp CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence 4799999999 9 88888776 7899999999995338999999999999999987 6688999999999
Q ss_pred --Ccchhccc---ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhcceecCCcEEECCCEE
Q 012037 359 --VAGAERLQ---KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVI 433 (472)
Q Consensus 359 --~~~~~~~~---~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~ii 433 (472)
..+...+. .++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++..+.++.+|+|||+|
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~ii 155 (175)
T 3cne_A 76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNFF 155 (175)
T ss_dssp TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTEE
T ss_pred cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCEE
Confidence 53455555 7899999999999999999999999999999999999999999999999988777899999999999
Q ss_pred EcCChhhHHHHHHHHHHHh
Q 012037 434 TSRGLANVIDFALAIVSKF 452 (472)
Q Consensus 434 Ta~g~~~~~d~al~li~~~ 452 (472)
||+|+.+++||++++|+++
T Consensus 156 Ts~g~~~~~d~al~li~~l 174 (175)
T 3cne_A 156 TAQDENTIWTMLPKVIEAL 174 (175)
T ss_dssp EESSGGGGGGTHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHh
Confidence 9999999999999999986
No 41
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=99.97 E-value=9.4e-32 Score=254.08 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=148.8
Q ss_pred CCCEEEEEeC----------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCC--------C-----cEEeecCCc
Q 012037 286 RMPRVLIPIA----------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQ--------G-----VKIIADKSI 342 (472)
Q Consensus 286 ~~~~V~il~~----------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~--------G-----~~v~~d~~l 342 (472)
+++||+|+++ +||++.|+..++++|+++||+++++|++++ ++.+.. | .++.++..+
T Consensus 4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARL 82 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCCh
Confidence 4579999999 999999999999999999999999999997 776542 3 678888889
Q ss_pred cccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC------CCCCceeccChhhHhh-
Q 012037 343 SDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG------LLKAKKATAHPSVIGK- 415 (472)
Q Consensus 343 ~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG------lL~g~~~T~~~~~~~~- 415 (472)
++++..+||+||||||......+..++.+++||+++++++++|++||+|+++|+++| ||+||++|+||...+.
T Consensus 83 ~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~ 162 (224)
T 1u9c_A 83 SKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEERE 162 (224)
T ss_dssp CGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred HHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCCCHHHhh
Confidence 888667899999999985444578899999999999999999999999999999999 9999999999987664
Q ss_pred --------------hhc--ceecCCc-----EEECCCEEEcCChhhHHHHHHHHHHHhcCH
Q 012037 416 --------------LTN--EVVNGTK-----VVVDGKVITSRGLANVIDFALAIVSKFFGH 455 (472)
Q Consensus 416 --------------l~~--~~~~~~~-----vv~dg~iiTa~g~~~~~d~al~li~~~~g~ 455 (472)
|++ ..+.+.. +|+|||+|||+|+.+++||++++|+++.|+
T Consensus 163 ~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~ 223 (224)
T 1u9c_A 163 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER 223 (224)
T ss_dssp HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred ccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence 443 3455554 999999999999999999999999999885
No 42
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.97 E-value=6.9e-31 Score=238.58 Aligned_cols=160 Identities=22% Similarity=0.286 Sum_probs=144.6
Q ss_pred CcEEEEEeCC---C---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCC--CCCcccEEEEcCC
Q 012037 84 PKKVLVPVGF---G---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNC--SHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~ill~~---g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~--~~~~~D~vivpGG 155 (472)
++||+|+++| | |++.|+.. +++|+++++++++|.++++++|..+.+|..+++. ++.+||+|+||||
T Consensus 2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG 75 (175)
T 3cne_A 2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCG 75 (175)
T ss_dssp CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECC
T ss_pred CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCC
Confidence 4799999999 9 88877766 7899999999996449999999999999999887 6668999999999
Q ss_pred --cccccccc---CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCceeecCcchhccCCCCccccCcEEEeCCE
Q 012037 156 --MPGSVRLR---DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEV 230 (472)
Q Consensus 156 --~~~~~~l~---~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i 230 (472)
..+...+. .++.+.+||+++++++|+|++||+| .++|+++|||+||++||||...+.|++..+.++.+|+|||+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G-~~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~Dg~i 154 (175)
T 3cne_A 76 DAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAG-AMMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEIDGNF 154 (175)
T ss_dssp TTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTH-HHHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEEETTE
T ss_pred cCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHH-HHHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEEeCCE
Confidence 54555555 7899999999999999999999996 56999999999999999999999999877888999999999
Q ss_pred EeCCCCCChHHHHHHHHHHH
Q 012037 231 TTSRGPGTSFEFALCLVEQL 250 (472)
Q Consensus 231 iTa~g~~~~~dlal~li~~~ 250 (472)
|||+|+.+++||++++|+++
T Consensus 155 iTs~g~~~~~d~al~li~~l 174 (175)
T 3cne_A 155 FTAQDENTIWTMLPKVIEAL 174 (175)
T ss_dssp EEESSGGGGGGTHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHh
Confidence 99999999999999999986
No 43
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=99.97 E-value=1.1e-30 Score=246.77 Aligned_cols=169 Identities=25% Similarity=0.285 Sum_probs=147.5
Q ss_pred CcEEEEEeC----------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccC--------C-----ceeeeCCCcC
Q 012037 84 PKKVLVPVG----------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS--------G-----TRLVADTSIS 140 (472)
Q Consensus 84 ~~kV~ill~----------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~--------G-----~~v~~d~~~~ 140 (472)
++||+|+++ +||+..|+..++++|+++||++++++++++ ++++.. | ..+.++..++
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG-EVPLDPRSINEKDPSWAEAEAALKHTARLS 83 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB-CCCBCGGGSSSCCGGGHHHHHHTTSBEECC
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC-ccccCccccccHHHHHhhhhHhhcCCCChH
Confidence 379999999 999999999999999999999999999976 776543 3 5688898998
Q ss_pred CCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC------CCCCceeecCcchhcc-
Q 012037 141 NCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG------LLRRKQITCHPAFTDK- 213 (472)
Q Consensus 141 ~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG------lL~g~~~T~~~~~~~~- 213 (472)
++++.+||+||||||......+..++.+.+||+++++++|+|++||+| .++|+++| ||+||++||||...+.
T Consensus 84 ~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G-~~~La~ag~~~g~~lL~Gr~~T~~~~~~~~~ 162 (224)
T 1u9c_A 84 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHG-PSGLVNATYKDGTPIVKGKTVTSFTDEEERE 162 (224)
T ss_dssp GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTG-GGGGTTCBCTTSCBTTTTCEECCSCHHHHHH
T ss_pred HcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChH-HHHHHHccccCCCceecCcEEecCCCHHHhh
Confidence 887678999999999644445788999999999999999999999996 56899999 9999999999986653
Q ss_pred --------------CCC--CccccCc-----EEEeCCEEeCCCCCChHHHHHHHHHHHhCch
Q 012037 214 --------------LPT--FWAVKSN-----IHVSGEVTTSRGPGTSFEFALCLVEQLFGES 254 (472)
Q Consensus 214 --------------l~~--~~~~~~~-----~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~ 254 (472)
|++ ..++++. +|+|||+|||+|+.+++||+++||+++.|++
T Consensus 163 ~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~ 224 (224)
T 1u9c_A 163 VGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE 224 (224)
T ss_dssp HTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred ccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence 333 4566654 9999999999999999999999999999864
No 44
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=99.96 E-value=3.9e-30 Score=245.90 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=145.4
Q ss_pred CCEEEEEeC------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee---c-------------------CC
Q 012037 287 MPRVLIPIA------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV---A-------------------SQ 332 (472)
Q Consensus 287 ~~~V~il~~------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~---s-------------------~~ 332 (472)
|+||+|++. +||++.|+..|+++|+++||+|+++|++++ ++. + +.
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 81 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF 81 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence 579999997 689999999999999999999999999987 432 1 23
Q ss_pred CcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC-------CCCCce
Q 012037 333 GVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-------LLKAKK 405 (472)
Q Consensus 333 G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG-------lL~g~~ 405 (472)
|+.+.++..+++++.++||+||||||......+..++.+++||+++++++++|++||+|+++|+++| ||+||+
T Consensus 82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~ 161 (243)
T 1rw7_A 82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKS 161 (243)
T ss_dssp HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcE
Confidence 6678888899988777899999999985456678899999999999999999999999999999999 999999
Q ss_pred eccChhhHhh-------------------hh--cceec------CCcEEECCCEEEcCChhhHHHHHHHHHHHhcC
Q 012037 406 ATAHPSVIGK-------------------LT--NEVVN------GTKVVVDGKVITSRGLANVIDFALAIVSKFFG 454 (472)
Q Consensus 406 ~T~~~~~~~~-------------------l~--~~~~~------~~~vv~dg~iiTa~g~~~~~d~al~li~~~~g 454 (472)
+|+||...+. ++ ...+. +..+|+|||+|||+|+.+++||++++|+++-.
T Consensus 162 ~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~ 237 (243)
T 1rw7_A 162 ITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN 237 (243)
T ss_dssp ECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred EeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence 9999987665 33 23444 78899999999999999999999999998743
No 45
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=99.96 E-value=1.5e-29 Score=241.01 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=144.7
Q ss_pred CCEEEEEeC------------CCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee---------------------cCCC
Q 012037 287 MPRVLIPIA------------NGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV---------------------ASQG 333 (472)
Q Consensus 287 ~~~V~il~~------------~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~---------------------s~~G 333 (472)
|+||+|++. +||++.|+..|+++|+++|++|+++|++|+..+. ++.+
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 82 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN 82 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence 678999987 4899999999999999999999999999873231 1234
Q ss_pred cEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-------CCCCCcee
Q 012037 334 VKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-------GLLKAKKA 406 (472)
Q Consensus 334 ~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-------GlL~g~~~ 406 (472)
.++.++..+++++..+||+||||||.+..+.+..++.+.+||+++++++++|++||+|+++|+++ |||+||++
T Consensus 83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~ 162 (244)
T 3kkl_A 83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAI 162 (244)
T ss_dssp HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEE
T ss_pred HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCcee
Confidence 56777888999888899999999998544678899999999999999999999999999999999 99999999
Q ss_pred ccChhhHhh-------------------hhc--ceecC------CcEEECCCEEEcCChhhHHHHHHHHHHHhcCHHH
Q 012037 407 TAHPSVIGK-------------------LTN--EVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR 457 (472)
Q Consensus 407 T~~~~~~~~-------------------l~~--~~~~~------~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~~~ 457 (472)
|+||...+. +++ ..+.+ ..+|+|||+||++|+.++++|++++|+++...+.
T Consensus 163 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~~ 240 (244)
T 3kkl_A 163 TGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVEH 240 (244)
T ss_dssp CCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC---
T ss_pred cCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhhh
Confidence 999987543 222 34444 6899999999999999999999999999987653
No 46
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=99.96 E-value=5.2e-29 Score=255.01 Aligned_cols=170 Identities=22% Similarity=0.303 Sum_probs=153.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCc---------------ceecCCCcEEeecCCccccCCCcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERST---------------QIVASQGVKIIADKSISDAAESVY 350 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~---------------~v~s~~G~~v~~d~~l~~~~~~~~ 350 (472)
+++||+|+++|||++.|+..++++|+++||+++++|++++. .++++.|..+.++..+++++..+|
T Consensus 11 ~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 90 (396)
T 3uk7_A 11 NSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKY 90 (396)
T ss_dssp CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGC
T ss_pred cCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccC
Confidence 46899999999999999999999999999999999998641 245677999999999999877899
Q ss_pred cEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCceeccChhhHhhhhc--ceecC----C
Q 012037 351 DLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAKKATAHPSVIGKLTN--EVVNG----T 424 (472)
Q Consensus 351 D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~~~T~~~~~~~~l~~--~~~~~----~ 424 (472)
|+||||||. +...+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ ..+.+ +
T Consensus 91 D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~ 169 (396)
T 3uk7_A 91 DGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPD 169 (396)
T ss_dssp SEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTT
T ss_pred CEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCc
Confidence 999999997 4566788999999999999999999999999999999999999999999999999975 23332 3
Q ss_pred cEEECCCEEEcCChhhHHHHHHHHHHHhcCHH
Q 012037 425 KVVVDGKVITSRGLANVIDFALAIVSKFFGHA 456 (472)
Q Consensus 425 ~vv~dg~iiTa~g~~~~~d~al~li~~~~g~~ 456 (472)
.+|+|||+|||+|+.+++||++++|+++.|++
T Consensus 170 ~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~ 201 (396)
T 3uk7_A 170 VCVVDGSLITAATYEGHPEFIQLFVKALGGKI 201 (396)
T ss_dssp CEEEETTEEEESSGGGHHHHHHHHHHHTTCEE
T ss_pred ceEecCCEEEecCcccHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999999965
No 47
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=99.96 E-value=1.5e-29 Score=247.64 Aligned_cols=171 Identities=19% Similarity=0.198 Sum_probs=148.8
Q ss_pred CCCEEEEEeCC--------------CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC--------------C---Cc
Q 012037 286 RMPRVLIPIAN--------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS--------------Q---GV 334 (472)
Q Consensus 286 ~~~~V~il~~~--------------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~--------------~---G~ 334 (472)
..+||+|++.+ ||++.|+..++++|+++||+|+++|++++ ++... . |+
T Consensus 47 g~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~ 125 (291)
T 1n57_A 47 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKS 125 (291)
T ss_dssp SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHH
T ss_pred CCCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccc
Confidence 34699999986 79999999999999999999999999997 66522 2 77
Q ss_pred EEeecCCcccc-----CCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC----CCCCce
Q 012037 335 KIIADKSISDA-----AESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG----LLKAKK 405 (472)
Q Consensus 335 ~v~~d~~l~~~-----~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG----lL~g~~ 405 (472)
.+.++..++++ +..+||+||||||++..+.+..++.+++||+++++++++|++||+|+++|+++| ||+||+
T Consensus 126 ~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~ 205 (291)
T 1n57_A 126 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS 205 (291)
T ss_dssp HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred eecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCE
Confidence 88888888874 457899999999974333678899999999999999999999999999998885 999999
Q ss_pred eccChhhHhhhhc---------------------ceec----CCcEEECCCEEEcCChhhHHHHHHHHHHHhcCHHH
Q 012037 406 ATAHPSVIGKLTN---------------------EVVN----GTKVVVDGKVITSRGLANVIDFALAIVSKFFGHAR 457 (472)
Q Consensus 406 ~T~~~~~~~~l~~---------------------~~~~----~~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~~~ 457 (472)
+|+||...+.+++ ..+. +..+|+|||+|||+|+.+++||++++|+++.|.+.
T Consensus 206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~ 282 (291)
T 1n57_A 206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA 282 (291)
T ss_dssp ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence 9999998877632 2444 78899999999999999999999999999998764
No 48
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=99.96 E-value=7.3e-29 Score=236.35 Aligned_cols=170 Identities=16% Similarity=0.220 Sum_probs=143.8
Q ss_pred CcEEEEEeC------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---------------------ccCC
Q 012037 84 PKKVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---------------------ASSG 130 (472)
Q Consensus 84 ~~kV~ill~------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---------------------~~~G 130 (472)
|+||+|++. +||+..|+..++++|+++|++|+++|++++.++. ++.+
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 82 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN 82 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence 789999987 3889999999999999999999999999763231 1234
Q ss_pred ceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-------CCCCCce
Q 012037 131 TRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-------GLLRRKQ 203 (472)
Q Consensus 131 ~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-------GlL~g~~ 203 (472)
..+.+|.++++++..+||+|+||||......+..++.+.+||+++++++|+|++||+|+ ++|+++ |||+||+
T Consensus 83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~-~~La~a~~~~~g~gll~G~~ 161 (244)
T 3kkl_A 83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGP-LLFDGLIDIKTTRPLIEGKA 161 (244)
T ss_dssp HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTCE
T ss_pred HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhhccccCCceeCCce
Confidence 56778889999988899999999997545668899999999999999999999999975 489988 9999999
Q ss_pred eecCcchhcc-------------------CCC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCch
Q 012037 204 ITCHPAFTDK-------------------LPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGES 254 (472)
Q Consensus 204 ~T~~~~~~~~-------------------l~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~ 254 (472)
+|+||...+. +++ +.|++ ..+|+|||+||++|+.++.+|+++||+++.+.+
T Consensus 162 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~ 239 (244)
T 3kkl_A 162 ITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE 239 (244)
T ss_dssp ECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred ecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence 9999997542 333 55665 479999999999999999999999999998754
No 49
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=99.96 E-value=9.5e-29 Score=235.68 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=142.9
Q ss_pred CCEEEEEeCC------------CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecC----------------------C
Q 012037 287 MPRVLIPIAN------------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVAS----------------------Q 332 (472)
Q Consensus 287 ~~~V~il~~~------------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~----------------------~ 332 (472)
|+||+|++.+ ||++.|+..|+++|+++||+|+++|++|+ .+... .
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT-FGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC-CCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC-cccCcccccccccCHHHHHHHHhhhHHH
Confidence 6899999987 89999999999999999999999999987 43221 1
Q ss_pred CcEEee-cCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc------CCCCCce
Q 012037 333 GVKIIA-DKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH------GLLKAKK 405 (472)
Q Consensus 333 G~~v~~-d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a------GlL~g~~ 405 (472)
+..+.+ +..+++++..+||+||||||++....+..++.+.+||+++++++++|++||+|+++|+++ |||+||+
T Consensus 88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~ 167 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT 167 (247)
T ss_dssp HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence 223555 778889888899999999998433668899999999999999999999999999999999 9999999
Q ss_pred eccChhhHhh-------------------hhc--ceecC------CcEEECCCEEEcCChhhHHHHHHHHHHHhcCH
Q 012037 406 ATAHPSVIGK-------------------LTN--EVVNG------TKVVVDGKVITSRGLANVIDFALAIVSKFFGH 455 (472)
Q Consensus 406 ~T~~~~~~~~-------------------l~~--~~~~~------~~vv~dg~iiTa~g~~~~~d~al~li~~~~g~ 455 (472)
+|+||...+. +++ ..+.+ ..+|+|||+||++|+.++.+|++++|+++...
T Consensus 168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~ 244 (247)
T 3n7t_A 168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI 244 (247)
T ss_dssp ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence 9999987544 222 34443 58999999999999999999999999998643
No 50
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=99.95 E-value=3.2e-29 Score=237.95 Aligned_cols=166 Identities=24% Similarity=0.325 Sum_probs=140.9
Q ss_pred CCCEEEEEeC-----CCCCHHHHHHHHHHHHhCCCeEEEEEecCCcc--e---------ecCCCcEEeec-------CCc
Q 012037 286 RMPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERSTQ--I---------VASQGVKIIAD-------KSI 342 (472)
Q Consensus 286 ~~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~--v---------~s~~G~~v~~d-------~~l 342 (472)
.|+||+|+++ +||++.|++.++++|+++||+|+++|++++ + + .++.|+.+.++ ..+
T Consensus 5 ~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l 83 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRPL 83 (232)
T ss_dssp -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEG
T ss_pred cCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCCH
Confidence 4689999999 999999999999999999999999999986 4 3 77889888887 778
Q ss_pred cccCCCcccEEEEcCCCcchh----------cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCC-CceeccC-h
Q 012037 343 SDAAESVYDLIILPGGVAGAE----------RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLK-AKKATAH-P 410 (472)
Q Consensus 343 ~~~~~~~~D~livpGG~~~~~----------~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~-g~~~T~~-~ 410 (472)
++++.++||+||||||.+... .+..++.+++||++++++|++|++||+|+++|+++ |+ ||++|+| |
T Consensus 84 ~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~Tth~~ 161 (232)
T 1vhq_A 84 AQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLTIGTD 161 (232)
T ss_dssp GGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEECCCSC
T ss_pred HHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEeccCC
Confidence 887667899999999974322 12358999999999999999999999999999999 79 9999999 5
Q ss_pred -hhHhhhhc--ceecC----CcEEE-CCCEEEcCChhhHHHHHHHHHHHhcCHHHH
Q 012037 411 -SVIGKLTN--EVVNG----TKVVV-DGKVITSRGLANVIDFALAIVSKFFGHART 458 (472)
Q Consensus 411 -~~~~~l~~--~~~~~----~~vv~-dg~iiTa~g~~~~~d~al~li~~~~g~~~A 458 (472)
...+.|++ ..+.+ ..+++ |||+|||+ ++||++++|++++|.+.+
T Consensus 162 ~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~ 213 (232)
T 1vhq_A 162 IDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL 213 (232)
T ss_dssp HHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH
Confidence 67788876 34433 34444 59999997 789999999999999753
No 51
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=99.95 E-value=8.6e-29 Score=236.53 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=143.2
Q ss_pred CcEEEEEeC------------CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---c-------------------cC
Q 012037 84 PKKVLVPVG------------FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---A-------------------SS 129 (472)
Q Consensus 84 ~~kV~ill~------------~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~-------------------~~ 129 (472)
|+||+|+++ +||+..|+..++++|+++||+|+++|++++ ++. + +.
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~-~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 81 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK-FGWDEHSLAKDFLNGQDETDFKNKDSDF 81 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC-CCBCGGGGSTTTSCHHHHHHHHCTTSHH
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC-CCcCcccccccccChHHHHHHHhhhHHH
Confidence 579999997 689999999999999999999999999976 432 1 23
Q ss_pred CceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-------CCCCc
Q 012037 130 GTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-------LLRRK 202 (472)
Q Consensus 130 G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-------lL~g~ 202 (472)
|..+.++..+++++..+||+||||||......+..++.+.+||+++++++|+|++||+|+ ++|+++| ||+||
T Consensus 82 g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~-~~La~ag~~~~g~~lL~G~ 160 (243)
T 1rw7_A 82 NKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGP-AIFDGLTDKKTGRPLIEGK 160 (243)
T ss_dssp HHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTTSSBTTTTC
T ss_pred HhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCH-HHHHhcCcccCCceeeCCc
Confidence 557888889998877789999999996545567889999999999999999999999975 5899999 99999
Q ss_pred eeecCcchhcc-------------------CC--CCccc------cCcEEEeCCEEeCCCCCChHHHHHHHHHHHhC
Q 012037 203 QITCHPAFTDK-------------------LP--TFWAV------KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFG 252 (472)
Q Consensus 203 ~~T~~~~~~~~-------------------l~--~~~~~------~~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g 252 (472)
++|+||...+. |+ ...++ +..+|+|||+|||+|+.+++||+++||+++..
T Consensus 161 ~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~ 237 (243)
T 1rw7_A 161 SITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN 237 (243)
T ss_dssp EECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred EEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence 99999997665 22 24555 67799999999999999999999999998743
No 52
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=99.95 E-value=3.7e-28 Score=237.70 Aligned_cols=171 Identities=16% Similarity=0.253 Sum_probs=146.2
Q ss_pred CcEEEEEeCC--------------CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc--------------C---Cce
Q 012037 84 PKKVLVPVGF--------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS--------------S---GTR 132 (472)
Q Consensus 84 ~~kV~ill~~--------------g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~--------------~---G~~ 132 (472)
.+||+|++.+ ||+..|+..++++|+++||+|++++++++ ++... . |..
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~-~v~~d~~s~~~~~~~~~~~~~~~g~~ 126 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL-MTKFEYWAMPHKDEKVMPFFEQHKSL 126 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC-CCCBCGGGCCTTCTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC-cccccccccccccHHHHHHHHhccce
Confidence 4699999986 79999999999999999999999999976 66522 2 677
Q ss_pred eeeCCCcCCC-----CCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC----CCCCCce
Q 012037 133 LVADTSISNC-----SHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW----GLLRRKQ 203 (472)
Q Consensus 133 v~~d~~~~~~-----~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a----GlL~g~~ 203 (472)
+.++..++++ +..+||+||||||.+....+..++.+.+||+++++++|+|++||+|+. +|+++ |||+||+
T Consensus 127 l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~-~La~a~~~~GLL~Gr~ 205 (291)
T 1n57_A 127 FRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLNGYS 205 (291)
T ss_dssp HHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTTTCE
T ss_pred ecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHH-HHHhhcccCccCCCCE
Confidence 8888888773 456899999999954443688899999999999999999999999754 67776 5999999
Q ss_pred eecCcchhccCCC---------------------Cccc----cCcEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhH
Q 012037 204 ITCHPAFTDKLPT---------------------FWAV----KSNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVA 256 (472)
Q Consensus 204 ~T~~~~~~~~l~~---------------------~~~~----~~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a 256 (472)
+||||...+.+++ +.++ +..+|+|||+|||+|+.+++||+++||+++.|.+..
T Consensus 206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~~ 283 (291)
T 1n57_A 206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG 283 (291)
T ss_dssp ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHCC
T ss_pred EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchhh
Confidence 9999999887642 3455 678999999999999999999999999999987654
No 53
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=99.95 E-value=5.4e-28 Score=230.48 Aligned_cols=169 Identities=20% Similarity=0.212 Sum_probs=141.9
Q ss_pred CcEEEEEeCC------------CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc---------------------CC
Q 012037 84 PKKVLVPVGF------------GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS---------------------SG 130 (472)
Q Consensus 84 ~~kV~ill~~------------g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~---------------------~G 130 (472)
|+||+|++.+ ||+..|+..++++|+++|++|+++|++++.++... .+
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 88 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM 88 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence 7899999987 88899999999999999999999999876333211 11
Q ss_pred ceeee-CCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC------CCCCCce
Q 012037 131 TRLVA-DTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW------GLLRRKQ 203 (472)
Q Consensus 131 ~~v~~-d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a------GlL~g~~ 203 (472)
..+.. +..+++++..+||+||||||+.....+..++.+.+||+++++++|+|++||+|+. +|+++ |||+||+
T Consensus 89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~-~La~a~~~~g~gll~G~~ 167 (247)
T 3n7t_A 89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPA-MLPGIHDENGDSVIKDKT 167 (247)
T ss_dssp HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGCBCTTSSBTTTTCE
T ss_pred HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHhhcccCCccccCce
Confidence 23555 7888898888999999999964335688999999999999999999999999754 89998 9999999
Q ss_pred eecCcchhcc-------------------CCC--Ccccc------CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037 204 ITCHPAFTDK-------------------LPT--FWAVK------SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGE 253 (472)
Q Consensus 204 ~T~~~~~~~~-------------------l~~--~~~~~------~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~ 253 (472)
+|+||...+. +++ +.|++ ..+|+|||+||++|+.++.+|++++|+++.+.
T Consensus 168 ~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~ 244 (247)
T 3n7t_A 168 VTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI 244 (247)
T ss_dssp ECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred ecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence 9999997654 222 55655 47999999999999999999999999998653
No 54
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=99.94 E-value=6e-28 Score=229.15 Aligned_cols=180 Identities=20% Similarity=0.269 Sum_probs=143.8
Q ss_pred CCCcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcc--e---------eccCCceeeeC-------CC
Q 012037 82 VPPKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLE--V---------EASSGTRLVAD-------TS 138 (472)
Q Consensus 82 ~~~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~--v---------~~~~G~~v~~d-------~~ 138 (472)
+.|+||+|+++ +||+..|+..++++|+++||+|+++|++++ + + +++.|+.+.++ ..
T Consensus 4 ~~m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~-~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~ 82 (232)
T 1vhq_A 4 ITMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ-QVDVINHLTGEAMTETRNVLIEAARITRGEIRP 82 (232)
T ss_dssp --CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSB-CSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEE
T ss_pred ccCCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCC-CCcccccccccchhhhhhhhHHHHHhhhcCCCC
Confidence 34789999999 999999999999999999999999999976 4 3 67788888887 77
Q ss_pred cCCCCCCcccEEEEcCCccccc----------cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCC-CceeecC
Q 012037 139 ISNCSHQVFDLIALPGGMPGSV----------RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLR-RKQITCH 207 (472)
Q Consensus 139 ~~~~~~~~~D~vivpGG~~~~~----------~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~-g~~~T~~ 207 (472)
+++++..+||+||||||..... .+..++.+.+||+++++++|+|++||+| .++|+++ |+ ||++|||
T Consensus 83 l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G-~~~La~a--L~~Gr~~Tth 159 (232)
T 1vhq_A 83 LAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIA-PAMLPKI--FDFPLRLTIG 159 (232)
T ss_dssp GGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTG-GGGHHHH--CSSCCEECCC
T ss_pred HHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHH-HHHHHHH--hcCCCEEecc
Confidence 8887667899999999964322 2234899999999999999999999997 5589988 79 9999999
Q ss_pred -c-chhccCCC--Ccccc---CcEEEe--CCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCcc
Q 012037 208 -P-AFTDKLPT--FWAVK---SNIHVS--GEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADNS 271 (472)
Q Consensus 208 -~-~~~~~l~~--~~~~~---~~~v~D--g~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~~ 271 (472)
| .+.+.|++ ..+++ ..+++| ||+|||+ ++||+++||++++|.+.+ +.+.+.+.+++.+
T Consensus 160 ~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~--~~~~~~~~~~~~~ 226 (232)
T 1vhq_A 160 TDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL--VSRVLVLAEEGGS 226 (232)
T ss_dssp SCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH--HHHHHHHHC----
T ss_pred CCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH--HHHHHHhhhccCC
Confidence 5 67777876 56655 355555 9999996 889999999999999753 3344445544433
No 55
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=99.94 E-value=4.1e-27 Score=223.66 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=135.4
Q ss_pred CCCEEEEEeC-----CCCCHHHHHHHHHHHHhCCCeEEEEEecCCc----------ceecCCCcEEeec-------CCcc
Q 012037 286 RMPRVLIPIA-----NGSEEIEIVTIVDILRRAKVDVVVASVERST----------QIVASQGVKIIAD-------KSIS 343 (472)
Q Consensus 286 ~~~~V~il~~-----~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~----------~v~s~~G~~v~~d-------~~l~ 343 (472)
+++||+|++. |||+++|+..|+++|+++||+|+++|++++. ++.++.|+.+.++ ..++
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~ 101 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE 101 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence 3479999998 9999999999999999999999999998851 4667788888887 6788
Q ss_pred ccCCCcccEEEEcCCCcchhc-----------ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC-CCCCceeccChh
Q 012037 344 DAAESVYDLIILPGGVAGAER-----------LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG-LLKAKKATAHPS 411 (472)
Q Consensus 344 ~~~~~~~D~livpGG~~~~~~-----------~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG-lL~g~~~T~~~~ 411 (472)
+++.++||+||||||.+.... +..++.+++||+++++++++|++||+|+++|+++| ||+||++|+||.
T Consensus 102 dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T~~~~ 181 (242)
T 3l3b_A 102 QIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGED 181 (242)
T ss_dssp GCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEECCCC-
T ss_pred HCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEEecCC
Confidence 887789999999999743221 35689999999999999999999999999999999 999999999999
Q ss_pred hHhhhhc--ceecC---CcEEEC--CCEEEcCChhhHHHHHHHHHHHhcCHH
Q 012037 412 VIGKLTN--EVVNG---TKVVVD--GKVITSRGLANVIDFALAIVSKFFGHA 456 (472)
Q Consensus 412 ~~~~l~~--~~~~~---~~vv~d--g~iiTa~g~~~~~d~al~li~~~~g~~ 456 (472)
....+++ ..+.+ +.+|+| ||+||+++... +..|.+.+.|.+
T Consensus 182 ~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~----~~~~~e~~~g~~ 229 (242)
T 3l3b_A 182 SNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR----NDSLYNVYLGIQ 229 (242)
T ss_dssp ---CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS----CCCHHHHHHHHH
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc----CCCHHHHHhCHH
Confidence 8777765 44555 578888 99999997754 344555555543
No 56
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=99.93 E-value=1.6e-26 Score=219.61 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=134.2
Q ss_pred CcEEEEEeC-----CCCcHHHHHHHHHHHHhCCCEEEEEeeCCC----------cceeccCCceeeeC-------CCcCC
Q 012037 84 PKKVLVPVG-----FGTEEMEAVIIVDVLRRAGAQVTMASVEPQ----------LEVEASSGTRLVAD-------TSISN 141 (472)
Q Consensus 84 ~~kV~ill~-----~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g----------~~v~~~~G~~v~~d-------~~~~~ 141 (472)
++||+|++. |||+..|+..++++|+++||+|+++|+++| .+++++.|+.+.+| .++++
T Consensus 23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~d 102 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQ 102 (242)
T ss_dssp -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGG
T ss_pred cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHH
Confidence 489999998 999999999999999999999999999875 24667788888888 67888
Q ss_pred CCCCcccEEEEcCCcccccc-----------ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC-CCCCceeecCcc
Q 012037 142 CSHQVFDLIALPGGMPGSVR-----------LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG-LLRRKQITCHPA 209 (472)
Q Consensus 142 ~~~~~~D~vivpGG~~~~~~-----------l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG-lL~g~~~T~~~~ 209 (472)
++..+||+|+||||...... +..++.+.+||+++++++|+|++||+|+ ++|+++| ||+||++|+||.
T Consensus 103 v~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~-~~La~ag~lL~Gr~~T~~~~ 181 (242)
T 3l3b_A 103 IRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP-AVVVALLKDIAKVKVTIGED 181 (242)
T ss_dssp CCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH-HHHHHHHTTTCCCEECCCC-
T ss_pred CCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHhCcccCCCEEEecCC
Confidence 87779999999999643221 3568999999999999999999999975 5899999 999999999999
Q ss_pred hhccCCC--Ccccc---CcEEEe--CCEEeCCCCCChHHHHHHHHHHHhCc
Q 012037 210 FTDKLPT--FWAVK---SNIHVS--GEVTTSRGPGTSFEFALCLVEQLFGE 253 (472)
Q Consensus 210 ~~~~l~~--~~~~~---~~~v~D--g~iiTa~g~~~~~dlal~li~~~~g~ 253 (472)
....+++ +.|++ +++|+| ||+||+.+...+ ..+.|-..|.
T Consensus 182 ~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~~----~~~~e~~~g~ 228 (242)
T 3l3b_A 182 SNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMRN----DSLYNVYLGI 228 (242)
T ss_dssp ---CHHHHTCEECCCCTTCCEEETTTTEEEECGGGSC----CCHHHHHHHH
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCcccC----CCHHHHHhCH
Confidence 8877776 67777 579999 999999977532 3344444444
No 57
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=99.89 E-value=1.2e-22 Score=217.79 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=148.1
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCC--CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc
Q 012037 51 KNSAPTRRRSSKPTKNLTLTTPTTPEATNSA--VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS 128 (472)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~ 128 (472)
.++.++||+|| +......+ +.++||+||++|||+..|+..++++|+.+||+++++++++| +|+++
T Consensus 511 ~~~~~~~~~ls------------~~~~~~~~~~m~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss 577 (715)
T 1sy7_A 511 PNHGRKTINLS------------QTEFPPATPTIKSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAA 577 (715)
T ss_dssp CCCCCCCSSCS------------GGGCCCSSSCCTTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBT
T ss_pred cCCCCCCcccc------------cccCCCCCCCCCCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecC
Confidence 37888999998 44443333 66799999999999999999999999999999999999987 89999
Q ss_pred CCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC-CCCCCceeecC
Q 012037 129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW-GLLRRKQITCH 207 (472)
Q Consensus 129 ~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a-GlL~g~~~T~~ 207 (472)
+|..+.+|.+++++++.+||+||||||..+...+..++.+++||+++++++|+|++||+| .++|+++ ||.+-+.+.
T Consensus 578 ~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G-~~lLA~AlGL~~L~~aG-- 654 (715)
T 1sy7_A 578 NGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEA-VDLVAKAIALPQVTVSS-- 654 (715)
T ss_dssp TSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHHCCTTSCCCC--
T ss_pred CCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHH-HHHHHHccCcHhHHhcC--
Confidence 999999999999988789999999999545666788999999999999999999999996 5689999 994333221
Q ss_pred cchhccCCCCccccCcEEEeCCEEeCCCCC------------ChHHHHHHHHHHHhC
Q 012037 208 PAFTDKLPTFWAVKSNIHVSGEVTTSRGPG------------TSFEFALCLVEQLFG 252 (472)
Q Consensus 208 ~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~------------~~~dlal~li~~~~g 252 (472)
.+.+|+|||+||++|+. +..+|+.++++.+..
T Consensus 655 -------------a~~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~ 698 (715)
T 1sy7_A 655 -------------EAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ 698 (715)
T ss_dssp -------------SSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred -------------CCcEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence 26799999999999986 667788888888754
No 58
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=99.85 E-value=4.7e-21 Score=205.57 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=133.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
++||+|+++|||++.|+..++++|+.+||+++++|++++ +|+++.|+.+.++..+++++..+||+||||||..+...+.
T Consensus 534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~ 612 (715)
T 1sy7_A 534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-KVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS 612 (715)
T ss_dssp TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-CEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-ceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhc
Confidence 479999999999999999999999999999999999998 9999999999999999988767899999999954456677
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc-CCCCCceeccChhhHhhhhcceecCCcEEECCCEEEcCChh------
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH-GLLKAKKATAHPSVIGKLTNEVVNGTKVVVDGKVITSRGLA------ 439 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a-GlL~g~~~T~~~~~~~~l~~~~~~~~~vv~dg~iiTa~g~~------ 439 (472)
.++.+++||+++++++++|++||+|+++|+++ ||.+-+.+. ...+|+|||+||++|+.
T Consensus 613 ~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L~~aG---------------a~~VVvDg~lITs~gp~~~~l~~ 677 (715)
T 1sy7_A 613 KNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSS---------------EAEVHESYGVVTLKKVKPESFTD 677 (715)
T ss_dssp TCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCC---------------SSSCEEETTEEEESSCCTTTTTS
T ss_pred cCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhHHhcC---------------CCcEEEeCCEEECCCCccccccc
Confidence 89999999999999999999999999999999 994433221 16799999999999986
Q ss_pred ------hHHHHHHHHHHHhcC
Q 012037 440 ------NVIDFALAIVSKFFG 454 (472)
Q Consensus 440 ------~~~d~al~li~~~~g 454 (472)
+..+|+.++++.+..
T Consensus 678 ~~~i~~s~~~fa~~fi~~L~~ 698 (715)
T 1sy7_A 678 AVKIAKGAAGFLGEFFYAIAQ 698 (715)
T ss_dssp CCCCSTTCSSHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHHHc
Confidence 556788888877654
No 59
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=99.84 E-value=1.7e-20 Score=199.07 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=123.6
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc
Q 012037 49 QPKNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS 128 (472)
Q Consensus 49 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~ 128 (472)
.+.++.++||+|| +......++.++||+||+.|||+..|+..++++|+++|++|+++|+++| .|+++
T Consensus 577 ~~~~~~~~~~~ls------------~~~~~~~ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs 643 (753)
T 3ttv_A 577 PDVNGLKKDPSLS------------LYAIPDGDVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTAD 643 (753)
T ss_dssp CCBTTBSCCGGGC------------SSSSCCCCCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECT
T ss_pred CCCCCCCCCcccc------------ccCCCCCCCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeC
Confidence 3445778899998 6666656788999999999999999999999999999999999999988 89999
Q ss_pred CCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037 129 SGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199 (472)
Q Consensus 129 ~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL 199 (472)
+|..+.+|.+++++++.+||+|+|||| +...++.++.+++||+++++++|+|++||+|+. +|+++||-
T Consensus 644 ~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~-lLa~AGL~ 711 (753)
T 3ttv_A 644 DGTVLPIAATFAGAPSLTVDAVIVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIA 711 (753)
T ss_dssp TSCEEECCEETTTSCGGGCSEEEECCS--CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGGGTCC
T ss_pred CCCEEecccchhhCCCcCCCEEEECCC--ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHH-HHHHcCCC
Confidence 999999999999999889999999999 677799999999999999999999999999765 89999984
No 60
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=99.76 E-value=5.8e-18 Score=179.44 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeC--CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCC
Q 012037 53 SAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVG--FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSG 130 (472)
Q Consensus 53 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~--~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G 130 (472)
+.++||+|| +..+...++.++||+||+. +||+..|+..++++|+++|++|.+++++.| .
T Consensus 510 ~~~~~~~ls------------~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-~------ 570 (688)
T 2iuf_A 510 HDNTTAHIG------------AFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-N------ 570 (688)
T ss_dssp CCCCCTTCS------------SSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-T------
T ss_pred CCCCCcccc------------cCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-c------
Confidence 346899998 6666566788899999999 999999999999999999999999999865 2
Q ss_pred ceeeeCCCcCCCCCCcccEEEEcCCccc----------------cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhh
Q 012037 131 TRLVADTSISNCSHQVFDLIALPGGMPG----------------SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLL 194 (472)
Q Consensus 131 ~~v~~d~~~~~~~~~~~D~vivpGG~~~----------------~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa 194 (472)
.+|.++++.++.+||+|+||||..+ ...|..++++++||++++++||+|++||+|++ +|.
T Consensus 571 ---~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~ 646 (688)
T 2iuf_A 571 ---NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALE 646 (688)
T ss_dssp ---TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHH
T ss_pred ---ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHH
Confidence 8899999999999999999999766 67799999999999999999999999999877 899
Q ss_pred cCCCCCCceeecCcchhccCCCCccccCcEEEeCCEEeCCCCCChHHHHHHHHHHHh
Q 012037 195 PWGLLRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTSRGPGTSFEFALCLVEQLF 251 (472)
Q Consensus 195 ~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa~g~~~~~dlal~li~~~~ 251 (472)
++|+.. .|+++||+..+ ..+|+..+++.+.
T Consensus 647 ~aGi~~-------------------------~d~GVvts~~~--~~~f~~~fi~~la 676 (688)
T 2iuf_A 647 SGQISS-------------------------ERQGVYTGKNA--GDAFAKDIKSGLS 676 (688)
T ss_dssp HTTCCT-------------------------TSTTEEEESSS--SHHHHHHHHHHHH
T ss_pred HcCCCC-------------------------CCCCEEEcCCc--cHHHHHHHHHHHH
Confidence 999864 26789998776 4456666766554
No 61
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=99.73 E-value=3e-17 Score=173.42 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcEEEEEeCCC-CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccC
Q 012037 51 KNSAPTRRRSSKPTKNLTLTTPTTPEATNSAVPPKKVLVPVGFG-TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASS 129 (472)
Q Consensus 51 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~kV~ill~~g-~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~ 129 (472)
..+.++||+|| +..+...++.+|||+||+.|| |+..|+..++++|+++|+++++|+++.| .
T Consensus 516 ~~~~~~~~~ls------------~~~~~~~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g------~ 577 (688)
T 3ej6_A 516 YYHNNVTRGVS------------IFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA------S 577 (688)
T ss_dssp SCCCCCCSSCC------------SSSSCCSCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC------T
T ss_pred CCCCCCCcccc------------cccCCCCCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC------C
Confidence 44567899998 666666688999999999999 9999999999999999999999999976 2
Q ss_pred CceeeeCCCcCCCCCCcccEEEEcCCccc-------cccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037 130 GTRLVADTSISNCSHQVFDLIALPGGMPG-------SVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199 (472)
Q Consensus 130 G~~v~~d~~~~~~~~~~~D~vivpGG~~~-------~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL 199 (472)
| +|.++++.++.+||+|+||||..+ ...|+.++++++||+++++|+|+|++||+|++ +|.++|+-
T Consensus 578 G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~-lL~~AGI~ 649 (688)
T 3ej6_A 578 G----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKK-ALQSIGVE 649 (688)
T ss_dssp T----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHH-HHHHTTCC
T ss_pred C----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHH-HHHHcCCC
Confidence 4 899999999999999999999654 26788999999999999999999999999876 89999984
No 62
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=99.72 E-value=1.6e-17 Score=176.38 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=107.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
+.+||+|++.|||++.|+..++++|+++|++|+++|++++ .|+++.|..|.+|..+++++..+||+|||||| +...+
T Consensus 599 ~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~L 675 (753)
T 3ttv_A 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-EVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADI 675 (753)
T ss_dssp TTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-EEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGT
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-eEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHh
Confidence 3479999999999999999999999999999999999998 89999999999999999998788999999999 57788
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCC
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLL 401 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL 401 (472)
..++.+++||+++++++|+|++||+|+++|+++||-
T Consensus 676 r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~ 711 (753)
T 3ttv_A 676 ADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA 711 (753)
T ss_dssp TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence 899999999999999999999999999999999984
No 63
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=99.56 E-value=2e-14 Score=152.42 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=112.7
Q ss_pred hCchhHHhhhhccccccCCc-ch-----hhhccccccccc--CCCCEEEEEeC--CCCCHHHHHHHHHHHHhCCCeEEEE
Q 012037 251 FGESVAKEIGELLLMHNADN-SL-----KKEEFNEVEWFF--DRMPRVLIPIA--NGSEEIEIVTIVDILRRAKVDVVVA 320 (472)
Q Consensus 251 ~g~~~a~~va~~l~~~~~~~-~~-----~~~~~n~~~~~~--~~~~~V~il~~--~g~~~~e~~~~~d~l~~a~~~v~~v 320 (472)
...+.+++|++.|.+..... .. .+..++...... -..+||+|++. +||++.|+..+.+.|+++|.+++++
T Consensus 485 ~d~~~~~~v~~~l~~~~p~~~~~~~~~~~~~~ls~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vV 564 (688)
T 2iuf_A 485 ISDNLATRVASAIGVEAPKPNSSFYHDNTTAHIGAFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV 564 (688)
T ss_dssp HCHHHHHHHHTTTTCCCCCCCGGGCCCCCCTTCSSSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred hCHHHHHHHHHHhCCCCCCCCccCCCCCCCcccccCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 35567777888776543221 11 122333222111 13479999999 9999999999999999999999999
Q ss_pred EecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc----------------hhcccccHHHHHHHHHHHHcCCe
Q 012037 321 SVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG----------------AERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 321 s~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~----------------~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
+++.+ . .+|.++++.+..+||+|+||||..+ ...+..++.++++|+++++.||+
T Consensus 565 s~~~g-~---------~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKp 634 (688)
T 2iuf_A 565 AERXA-N---------NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKT 634 (688)
T ss_dssp ESSCC-T---------TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCE
T ss_pred eccCC-c---------ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCE
Confidence 99876 2 7788888888889999999999755 66788999999999999999999
Q ss_pred EEEEchhHHHHHHcCCCC
Q 012037 385 YGAVCSSPIVLHKHGLLK 402 (472)
Q Consensus 385 v~aic~G~~lLA~aGlL~ 402 (472)
|++||+|+++|.++|+..
T Consensus 635 IaAIc~ap~vL~~aGi~~ 652 (688)
T 2iuf_A 635 VGALGSGSDALESGQISS 652 (688)
T ss_dssp EEEEGGGHHHHHHTTCCT
T ss_pred EEEECchHHHHHHcCCCC
Confidence 999999999999999853
No 64
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=99.48 E-value=2e-13 Score=144.40 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=110.9
Q ss_pred CchhHHhhhhccccccCCcch------hhhccccc--ccccCCCCEEEEEeCCC-CCHHHHHHHHHHHHhCCCeEEEEEe
Q 012037 252 GESVAKEIGELLLMHNADNSL------KKEEFNEV--EWFFDRMPRVLIPIANG-SEEIEIVTIVDILRRAKVDVVVASV 322 (472)
Q Consensus 252 g~~~a~~va~~l~~~~~~~~~------~~~~~n~~--~~~~~~~~~V~il~~~g-~~~~e~~~~~d~l~~a~~~v~~vs~ 322 (472)
..+.++.|++.|......... .++.++.+ .+..-..+||+||+.+| |++.|+..+.+.|+++|++++++++
T Consensus 494 d~~~~~~va~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp 573 (688)
T 3ej6_A 494 SNDVAKRVAVALGLEAPQPDPTYYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAE 573 (688)
T ss_dssp CHHHHHHHHHHHTSCCCSCCTTSCCCCCCSSCCSSSSCCSCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCCCCCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455666677666654322111 13333332 12222458999999999 9999999999999999999999999
Q ss_pred cCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-------hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHH
Q 012037 323 ERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-------AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVL 395 (472)
Q Consensus 323 ~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-------~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lL 395 (472)
+.+ .| +|.++++++..+||+|+||||..+ .+.+..++.+++|++++++.+|+|++||+|+++|
T Consensus 574 ~~g------~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL 643 (688)
T 3ej6_A 574 YLA------SG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKAL 643 (688)
T ss_dssp SCC------TT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHH
T ss_pred CCC------CC----cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHH
Confidence 876 24 788999988899999999999744 2668889999999999999999999999999999
Q ss_pred HHcCCC
Q 012037 396 HKHGLL 401 (472)
Q Consensus 396 A~aGlL 401 (472)
.++|+-
T Consensus 644 ~~AGI~ 649 (688)
T 3ej6_A 644 QSIGVE 649 (688)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 999984
No 65
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.04 E-value=2.1e-10 Score=106.41 Aligned_cols=95 Identities=21% Similarity=0.349 Sum_probs=76.2
Q ss_pred CCCEEEEEeCCCCCH-HHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIANGSEE-IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~-~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
+|+||+|+.+++++. .+ +.+.|+.+|+++++++.. ++. .++|.||||||....+.
T Consensus 1 m~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~~--~~~d~lil~Gg~~~~~~ 56 (213)
T 3d54_D 1 MKPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DKL--DDYELIILPGGFSYGDY 56 (213)
T ss_dssp CCCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CCC--SSCSEEEECEECGGGGC
T ss_pred CCcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CCc--ccCCEEEECCCCchhhh
Confidence 468999999999874 54 489999999999887532 122 57999999999632222
Q ss_pred -----ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcCCCCCc
Q 012037 365 -----LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHGLLKAK 404 (472)
Q Consensus 365 -----~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aGlL~g~ 404 (472)
...++.+.+||+++.+++++|.+||.|..+|+.+|+|+|+
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~ 101 (213)
T 3d54_D 57 LRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA 101 (213)
T ss_dssp SSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred hccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence 1235678999999999999999999999999999999985
No 66
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=98.86 E-value=3.5e-09 Score=98.18 Aligned_cols=94 Identities=23% Similarity=0.311 Sum_probs=73.9
Q ss_pred CcEEEEEeCCCCcH-HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-
Q 012037 84 PKKVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR- 161 (472)
Q Consensus 84 ~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~- 161 (472)
|+||+|+.++++.. .+ +.+.|+++|+++.+++.. ++. .++|+||||||......
T Consensus 2 ~~~i~il~~~~~~~~~~---~~~~l~~~g~~~~~~~~~-------------------~~~--~~~d~lil~Gg~~~~~~~ 57 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRD---AYHALEINGFEPSYVGLD-------------------DKL--DDYELIILPGGFSYGDYL 57 (213)
T ss_dssp CCEEEEECCTTEEEHHH---HHHHHHTTTCEEEEECTT-------------------CCC--SSCSEEEECEECGGGGCS
T ss_pred CcEEEEEEcCCCCccHH---HHHHHHHCCCEEEEEecC-------------------CCc--ccCCEEEECCCCchhhhh
Confidence 67999999999874 44 489999999999888642 112 36999999999532222
Q ss_pred ----ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCCCCc
Q 012037 162 ----LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLLRRK 202 (472)
Q Consensus 162 ----l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL~g~ 202 (472)
+..+..+.+||+++++++++|.+||.| ..+|+.+|+|+|+
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G-~qlLa~aGll~g~ 101 (213)
T 3d54_D 58 RPGAVAAREKIAFEIAKAAERGKLIMGICNG-FQILIEMGLLKGA 101 (213)
T ss_dssp STTHHHHTSTTHHHHHHHHHHTCEEEECHHH-HHHHHHHTSSCSE
T ss_pred ccccccccHHHHHHHHHHHHCCCEEEEECHH-HHHHHHcCCCCCC
Confidence 123567899999999999999999996 5689999999984
No 67
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=98.07 E-value=4.5e-06 Score=76.02 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=62.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-cc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~ 365 (472)
|+||+|+-+.+ ...+ ..+.|+++|+++.+++.. +++ .++|.|++|||..... .+
T Consensus 1 ~m~I~il~~~~-~~~~---~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~ 55 (196)
T 2nv0_A 1 MLTIGVLGLQG-AVRE---HIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL 55 (196)
T ss_dssp CCEEEEECSSS-CCHH---HHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred CcEEEEEEccC-CcHH---HHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence 47899997632 2222 248899999988776431 123 5689999999973221 22
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~ 88 (196)
T 2nv0_A 56 IDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE 88 (196)
T ss_dssp HHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred hhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence 223455889999999999999999999999864
No 68
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=98.00 E-value=3.3e-05 Score=72.51 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
|||+++..+.++.... +.+.|+..|++++++....+. .+.+ +..+||.|||+||...+.....
T Consensus 1 m~i~vi~h~~~e~~g~--~~~~l~~~g~~~~~~~~~~~~--------------~~p~-~~~~~d~lii~GGp~~~~~~~~ 63 (236)
T 3l7n_A 1 MRIHFILHETFEAPGA--YLAWAALRGHDVSMTKVYRYE--------------KLPK-DIDDFDMLILMGGPQSPSSTKK 63 (236)
T ss_dssp CEEEEEECCTTSCCHH--HHHHHHHTTCEEEEEEGGGTC--------------CCCS-CGGGCSEEEECCCSSCTTCCTT
T ss_pred CeEEEEeCCCCCCchH--HHHHHHHCCCeEEEEeeeCCC--------------CCCC-CccccCEEEECCCCCCcccccc
Confidence 5899999888776554 446788999999998876541 1221 1257999999999754321111
Q ss_pred c------HHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 S------RILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~------~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+ ..+.++|+++.+++++|.+||-|..+|+.+
T Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~ 100 (236)
T 3l7n_A 64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA 100 (236)
T ss_dssp TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred cCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence 1 447899999999999999999999999875
No 69
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.99 E-value=2.3e-05 Score=74.21 Aligned_cols=95 Identities=19% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-cc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~ 365 (472)
+++|+|+..+.++..+.. .+.|+..|++++++....+.. ...+. .++|.|||+||..... ..
T Consensus 3 ~~~vliiqh~~~e~~~~i--~~~l~~~G~~v~v~~~~~~~~-------------~p~~~--~~~d~lIl~GGp~~~~d~~ 65 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHF--GDFLAGEHIPFQVLRMDRSDP-------------LPAEI--RDCSGLAMMGGPMSANDDL 65 (250)
T ss_dssp CCCEEEEESSSSCCCHHH--HHHHHHTTCCEEEEEGGGTCC-------------CCSCG--GGSSEEEECCCSSCTTSCC
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHCCCeEEEEeccCCCc-------------CcCcc--ccCCEEEECCCCCcccccc
Confidence 468999988877766654 456899999999988765410 11223 5799999999974322 12
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....++++|+++.+.+++|.+||-|..+|+.+
T Consensus 66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~ 98 (250)
T 3m3p_A 66 PWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA 98 (250)
T ss_dssp TTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence 233567899999999999999999999999875
No 70
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=97.96 E-value=6.6e-06 Score=76.43 Aligned_cols=87 Identities=23% Similarity=0.271 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-cc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-RL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~~ 365 (472)
.++|+|+.+++.. .+ .++.|+++|+++.+++.. +++ .++|.||+|||..... .+
T Consensus 23 ~~~I~il~~~~~~-~~---~~~~l~~~G~~~~~~~~~-------------------~~l--~~~Dglil~GG~~~~~~~~ 77 (219)
T 1q7r_A 23 NMKIGVLGLQGAV-RE---HVRAIEACGAEAVIVKKS-------------------EQL--EGLDGLVLPGGESTTMRRL 77 (219)
T ss_dssp CCEEEEESCGGGC-HH---HHHHHHHTTCEEEEECSG-------------------GGG--TTCSEEEECCCCHHHHHHH
T ss_pred CCEEEEEeCCCCc-HH---HHHHHHHCCCEEEEECCH-------------------HHH--hhCCEEEECCCChHHHHHH
Confidence 4789999876521 22 468999999988877531 133 5699999999973221 22
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 78 ~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~ 110 (219)
T 1q7r_A 78 IDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR 110 (219)
T ss_dssp HHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred hhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 224456799999999999999999999999864
No 71
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=97.93 E-value=1.1e-05 Score=74.33 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=62.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-c
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE-R 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~-~ 364 (472)
..+||+|+-+++ .+....+.|+++|+++.+++.. +++ .++|.||+|||..... .
T Consensus 19 ~~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~ 73 (208)
T 2iss_D 19 SHMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP-------------------EQL--DMVDGLILPGGESTTMIR 73 (208)
T ss_dssp -CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECSSCHHHHHH
T ss_pred CCcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCcHHHHHh
Confidence 457899997744 3444678888899888776421 123 4689999999963211 1
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 74 ~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 107 (208)
T 2iss_D 74 ILKEMDMDEKLVERINNGLPVFATCAGVILLAKR 107 (208)
T ss_dssp HHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred hhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence 2223346789999999999999999999999875
No 72
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=97.88 E-value=1.3e-05 Score=74.39 Aligned_cols=87 Identities=22% Similarity=0.165 Sum_probs=61.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l 162 (472)
.+||+|+.+.+ .+...++.|+++|+++.+++.. ++.+ ++|+|++|||..... .+
T Consensus 23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l~--~~Dglil~GG~~~~~~~~ 77 (219)
T 1q7r_A 23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS-------------------EQLE--GLDGLVLPGGESTTMRRL 77 (219)
T ss_dssp CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG-------------------GGGT--TCSEEEECCCCHHHHHHH
T ss_pred CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH-------------------HHHh--hCCEEEECCCChHHHHHH
Confidence 56899996644 2233568999999998887631 1222 699999999953221 12
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus 78 ~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lL~~~ 110 (219)
T 1q7r_A 78 IDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAKR 110 (219)
T ss_dssp HHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEEE
T ss_pred hhhhHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 2234557899999999999999999866 67764
No 73
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=97.87 E-value=1.6e-05 Score=72.32 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=60.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l 162 (472)
|+||+|+-+.+ . +....+.|+++|+++.+++.. ++. .++|+|++|||..... .+
T Consensus 1 ~m~I~il~~~~-~---~~~~~~~l~~~g~~~~~~~~~-------------------~~l--~~~d~iil~GG~~~~~~~~ 55 (196)
T 2nv0_A 1 MLTIGVLGLQG-A---VREHIHAIEACGAAGLVVKRP-------------------EQL--NEVDGLILPGGESTTMRRL 55 (196)
T ss_dssp CCEEEEECSSS-C---CHHHHHHHHHTTCEEEEECSG-------------------GGG--GGCSEEEECCSCHHHHHHH
T ss_pred CcEEEEEEccC-C---cHHHHHHHHHCCCEEEEeCCh-------------------HHH--hhCCEEEECCCChhhHHHH
Confidence 47899996522 2 222358999999988877531 112 2699999999953322 22
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus 56 ~~~~~~~~~i~~~~~~~~pilgIC~G~q-~l~~~ 88 (196)
T 2nv0_A 56 IDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAKE 88 (196)
T ss_dssp HHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSBC
T ss_pred hhhHHHHHHHHHHHHCCCcEEEECHHHH-HHHHH
Confidence 2234557899999999999999999765 67764
No 74
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=97.78 E-value=3.3e-05 Score=70.51 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc-
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL- 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~- 365 (472)
++||+|+-+..-+..+ ..+.|+++|+++.+++.. +++ .++|.|++|||.......
T Consensus 2 ~~~I~iid~~~~~~~~---~~~~l~~~G~~~~~~~~~-------------------~~l--~~~d~lil~G~g~~~~~~~ 57 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRS---AAKALEAAGFSVAVAQDP-------------------KAH--EEADLLVLPGQGHFGQVMR 57 (200)
T ss_dssp -CEEEEECSSCSCHHH---HHHHHHHTTCEEEEESST-------------------TSC--SSCSEEEECCCSCHHHHHH
T ss_pred ccEEEEEeCCCccHHH---HHHHHHHCCCeEEEecCh-------------------HHc--ccCCEEEECCCCcHHHHHH
Confidence 4689998554223333 489999999998876421 123 468999999943111111
Q ss_pred -cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 -QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 -~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 58 ~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 91 (200)
T 1ka9_H 58 AFQESGFVERVRRHLERGLPFLGICVGMQVLYEG 91 (200)
T ss_dssp TTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred HHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence 112457899999999999999999999999998
No 75
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=97.75 E-value=0.00015 Score=67.94 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=67.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
+||+++..+.++... .+.+.+++.|++++++....+.. +.+ ...+||+|||+||...+.....
T Consensus 1 m~i~vi~h~~~e~~g--~~~~~l~~~g~~~~~~~~~~~~~--------------~p~-~~~~~d~lii~GGp~~~~~~~~ 63 (236)
T 3l7n_A 1 MRIHFILHETFEAPG--AYLAWAALRGHDVSMTKVYRYEK--------------LPK-DIDDFDMLILMGGPQSPSSTKK 63 (236)
T ss_dssp CEEEEEECCTTSCCH--HHHHHHHHTTCEEEEEEGGGTCC--------------CCS-CGGGCSEEEECCCSSCTTCCTT
T ss_pred CeEEEEeCCCCCCch--HHHHHHHHCCCeEEEEeeeCCCC--------------CCC-CccccCEEEECCCCCCcccccc
Confidence 589999987776554 45577889999999998765421 111 1237999999999543222222
Q ss_pred C------hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 165 C------EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 165 ~------~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+ ....++|+++++.+++|.+||-|.. +|+.+
T Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Q-lL~~~ 100 (236)
T 3l7n_A 64 EFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQ-LMGVA 100 (236)
T ss_dssp TCTTCCHHHHHHHHHHHHHTTCEEEEETHHHH-HHHHH
T ss_pred cCcccchHHHHHHHHHHHHcCCCEEEEchHHH-HHHHH
Confidence 2 3478999999999999999999765 67765
No 76
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=97.73 E-value=3.1e-05 Score=71.18 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=61.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc-cc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV-RL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~-~l 162 (472)
.+||+|+-+.+ .+....+.|+++|+++.++.... +.. ++|+|++|||..... .+
T Consensus 20 ~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~~-------------------~l~--~~d~iil~GG~~~~~~~~ 74 (208)
T 2iss_D 20 HMKIGVLGVQG----DVREHVEALHKLGVETLIVKLPE-------------------QLD--MVDGLILPGGESTTMIRI 74 (208)
T ss_dssp CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSGG-------------------GGG--GCSEEEECSSCHHHHHHH
T ss_pred CcEEEEEECCC----chHHHHHHHHHCCCEEEEeCChH-------------------HHh--hCCEEEECCCcHHHHHhh
Confidence 56899996533 45557888999999888775320 122 699999999953221 12
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus 75 ~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~ 107 (208)
T 2iss_D 75 LKEMDMDEKLVERINNGLPVFATCAGVI-LLAKR 107 (208)
T ss_dssp HHHTTCHHHHHHHHHTTCCEEEETHHHH-HHEEE
T ss_pred hhhhhHHHHHHHHHHCCCeEEEECHHHH-HHHHH
Confidence 2233467899999999999999999765 67764
No 77
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.72 E-value=3.1e-05 Score=70.00 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-hhcc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-AERL 365 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~~~~ 365 (472)
.++|+|+.+++ .+....+.|+++|+++.+++.. +++ +++|.|++|||... ...+
T Consensus 2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------~~l--~~~dglil~GG~~~~~~~~ 56 (191)
T 2ywd_A 2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------EHL--EGLKALIVPGGESTTIGKL 56 (191)
T ss_dssp -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------GGG--TTCSEEEECSSCHHHHHHH
T ss_pred CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------hhh--ccCCEEEECCCChhhhHHh
Confidence 36899998865 2345789999999888766421 123 46899999999522 1222
Q ss_pred cccHHHHHHHHHHHHcC-CeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~a 398 (472)
..+..+.++|+++.+++ ++|.+||.|..+|+.+
T Consensus 57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~ 90 (191)
T 2ywd_A 57 AREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE 90 (191)
T ss_dssp HHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred hhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence 22346789999999999 9999999999999875
No 78
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=97.66 E-value=0.0001 Score=66.52 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=63.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 369 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 369 (472)
|+|+=+.+.. ...+.+.|+++|+++.++..+. .++++...++|.|++|||. .... ..
T Consensus 3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~~---~~ 59 (189)
T 1wl8_A 3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLEN---TG 59 (189)
T ss_dssp EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTTC---CT
T ss_pred EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chhh---hh
Confidence 7777766555 3477889999999988776432 2233322469999999996 4332 34
Q ss_pred HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+.++++++.++++++.+||.|..+|+.+
T Consensus 60 ~~~~~i~~~~~~~~PilGIC~G~Q~l~~~ 88 (189)
T 1wl8_A 60 NCEKVLEHYDEFNVPILGICLGHQLIAKF 88 (189)
T ss_dssp THHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred hHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence 56888887778899999999999999865
No 79
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=97.61 E-value=9.5e-05 Score=67.42 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=59.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc-cc--c
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP-GS--V 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~-~~--~ 160 (472)
++||+|+-+ ++. .+..+.+.|+++|+++.++... ++.. ++|+|++|||.. .. .
T Consensus 2 ~~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~-------------------~~l~--~~d~lil~G~g~~~~~~~ 57 (200)
T 1ka9_H 2 RMKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP-------------------KAHE--EADLLVLPGQGHFGQVMR 57 (200)
T ss_dssp -CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST-------------------TSCS--SCSEEEECCCSCHHHHHH
T ss_pred ccEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh-------------------HHcc--cCCEEEECCCCcHHHHHH
Confidence 368988843 222 2234589999999998887421 1122 699999999422 11 1
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+ .+..+.++|+++.+++++|.+||.|.. +|+.+
T Consensus 58 ~l-~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~ 91 (200)
T 1ka9_H 58 AF-QESGFVERVRRHLERGLPFLGICVGMQ-VLYEG 91 (200)
T ss_dssp TT-SSSCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred HH-HhcCHHHHHHHHHHcCCeEEEEcHHHH-HHHHh
Confidence 12 224578999999999999999999755 78876
No 80
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.60 E-value=0.00027 Score=66.80 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=68.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-c
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-L 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-l 162 (472)
+|||.|+..+.++... .+.+.|++.|++++++....+... + .+ ..+||.|||+||..+... .
T Consensus 3 ~~~vliiqh~~~e~~~--~i~~~l~~~G~~v~v~~~~~~~~~---------p----~~--~~~~d~lIl~GGp~~~~d~~ 65 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPG--HFGDFLAGEHIPFQVLRMDRSDPL---------P----AE--IRDCSGLAMMGGPMSANDDL 65 (250)
T ss_dssp CCCEEEEESSSSCCCH--HHHHHHHHTTCCEEEEEGGGTCCC---------C----SC--GGGSSEEEECCCSSCTTSCC
T ss_pred CCeEEEEECCCCCCHH--HHHHHHHHCCCeEEEEeccCCCcC---------c----Cc--cccCCEEEECCCCCcccccc
Confidence 5789999888776655 456678999999999887654111 1 11 237999999999533221 2
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.......++|+++.+.+++|.+||-|.. +|+.+
T Consensus 66 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-ll~~~ 98 (250)
T 3m3p_A 66 PWMPTLLALIRDAVAQRVPVIGHCLGGQ-LLAKA 98 (250)
T ss_dssp TTHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence 2225678999999999999999999765 67665
No 81
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=97.54 E-value=0.0003 Score=80.43 Aligned_cols=101 Identities=12% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIANGSE-EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~g~~-~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
..+||+|+.|+|.+ +.|+. ..|+++|+++.++..+. + .. .-.++ .++|.|++|||....+.
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~---~A~~~aG~~~~~v~~~d---l--------~~--~~~~l--~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSD---L--------LG--GRIGL--GNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHH---HHHHHTTCEEEEEEHHH---H--------HT--TSCCG--GGCSEEEECCSCGGGGT
T ss_pred CCCEEEEEecCCcCCHHHHH---HHHHHhCCceEEEeecc---c--------cc--CcccH--hhCCEEEECCCCcchhh
Confidence 45799999999886 47754 46678899988775421 0 00 01223 57999999998532221
Q ss_pred ----------ccccHHHHHHHHHHH-HcCCeEEEEchhHHHHHHc-CCCCCc
Q 012037 365 ----------LQKSRILKKLLKEQK-VAGRIYGAVCSSPIVLHKH-GLLKAK 404 (472)
Q Consensus 365 ----------~~~~~~l~~~L~~~~-~~g~~v~aic~G~~lLA~a-GlL~g~ 404 (472)
...++.+.+.|+++. ++++++.+||+|..+|.++ |||.|.
T Consensus 1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A 1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence 235677888888865 6899999999999999999 999986
No 82
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=97.53 E-value=0.00016 Score=65.65 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=60.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 369 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 369 (472)
|+|+=..+... ..+.+.|+++|+++.++..+.. .++++...++|.||++||...........
T Consensus 4 i~iid~~~s~~---~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~ 65 (195)
T 1qdl_B 4 TLIIDNYDSFV---YNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG 65 (195)
T ss_dssp EEEEECSCSSH---HHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred EEEEECCCchH---HHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence 77776554442 3678899999999988765421 23344222599999988764322211112
Q ss_pred HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
...++++++ ++++++.+||-|..+|+.+
T Consensus 66 ~~~~~i~~~-~~~~PvLGIC~G~QlL~~~ 93 (195)
T 1qdl_B 66 VSLDVIKYL-GKRTPILGVCLGHQAIGYA 93 (195)
T ss_dssp THHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence 345888875 7899999999999999975
No 83
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.48 E-value=8.8e-05 Score=66.95 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=61.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-cccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-SVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~~~l 162 (472)
.++|+|+...+ .+....+.|+++|+++.++.... +.+ ++|.|++|||... ...+
T Consensus 2 ~p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~~-------------------~l~--~~dglil~GG~~~~~~~~ 56 (191)
T 2ywd_A 2 RGVVGVLALQG----DFREHKEALKRLGIEAKEVRKKE-------------------HLE--GLKALIVPGGESTTIGKL 56 (191)
T ss_dssp -CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSGG-------------------GGT--TCSEEEECSSCHHHHHHH
T ss_pred CcEEEEEecCC----chHHHHHHHHHCCCEEEEeCChh-------------------hhc--cCCEEEECCCChhhhHHh
Confidence 35799998765 34567899999998887764220 122 5899999999422 2222
Q ss_pred cCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~a 196 (472)
..+..+.++|+++.+++ ++|.+||.|.. +|+.+
T Consensus 57 ~~~~~~~~~i~~~~~~~~~PilGiC~G~Q-~l~~~ 90 (191)
T 2ywd_A 57 AREYGIEDEVRKRVEEGSLALFGTCAGAI-WLAKE 90 (191)
T ss_dssp HHHTTHHHHHHHHHHTTCCEEEEETHHHH-HHEEE
T ss_pred hhhhhHHHHHHHHHHCCCCeEEEECHHHH-HHHHH
Confidence 22356788999999999 99999999755 67664
No 84
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=97.36 E-value=0.00028 Score=66.28 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=63.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc--
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-- 364 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-- 364 (472)
..||+|+-...+ .....+...|+..|+++.++-.+.+ +...+++ .++|.||++||......
T Consensus 12 ~~~~~~i~~~~~--~~~~~i~~~l~~~G~~v~v~~~~~~-------------~~~~~~l--~~~Dglil~GG~~~~~~~~ 74 (239)
T 1o1y_A 12 HVRVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG-------------EKLERPL--EEYSLVVLLGGYMGAYEEE 74 (239)
T ss_dssp CCEEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT-------------CCCSSCG--GGCSEEEECCCSCCTTCTT
T ss_pred eeEEEEEECCCC--CCchHHHHHHHhCCCcEEEeCCcCc-------------cccccch--hcCCEEEECCCCccccCCc
Confidence 356666644433 3344678889999988875533221 1011223 57899999998643321
Q ss_pred -ccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 365 -LQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 365 -~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
......+.++|+++.+++++|.+||-|..+|+.+
T Consensus 75 ~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a 109 (239)
T 1o1y_A 75 KYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV 109 (239)
T ss_dssp TCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence 1112367899999989999999999999999875
No 85
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=97.31 E-value=0.00028 Score=65.63 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=61.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhC---CCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh-
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRA---KVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE- 363 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a---~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~- 363 (472)
++|+|+.+++-. ....+.|+++ |.++.++.. .+++ +++|.||+|||.....
T Consensus 4 ~~I~Il~~~~~~----~~~~~~l~~~~~~G~~~~~~~~-------------------~~~l--~~~dglil~GG~~~~~~ 58 (227)
T 2abw_A 4 ITIGVLSLQGDF----EPHINHFIKLQIPSLNIIQVRN-------------------VHDL--GLCDGLVIPGGESTTVR 58 (227)
T ss_dssp EEEEEECTTSCC----HHHHHHHHTTCCTTEEEEEECS-------------------HHHH--HTCSEEEECCSCHHHHH
T ss_pred cEEEEEeCCCCc----HHHHHHHHHhccCCeEEEEEcC-------------------cccc--ccCCEEEECCCcHHHHH
Confidence 679999887532 2357888887 766655421 1223 4689999999963221
Q ss_pred ccccc--HHHHHHHHHHHHc-CCeEEEEchhHHHHHHc
Q 012037 364 RLQKS--RILKKLLKEQKVA-GRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 364 ~~~~~--~~l~~~L~~~~~~-g~~v~aic~G~~lLA~a 398 (472)
.+..+ ..+.++|+++.++ +++|.+||.|..+|+++
T Consensus 59 ~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~ 96 (227)
T 2abw_A 59 RCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN 96 (227)
T ss_dssp HHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence 22233 5689999999999 99999999999999875
No 86
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=97.28 E-value=0.00063 Score=62.59 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC-Ccchh
Q 012037 285 DRMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAGAE 363 (472)
Q Consensus 285 ~~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG-~~~~~ 363 (472)
++|+||+++=+.+.. .....+.|+++|+++.++..+. ..+++ .++|.|||||| .....
T Consensus 11 ~~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l--~~~DglIl~GG~p~~~~ 69 (212)
T 2a9v_A 11 HHMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSEL--DGLDGLVLSGGAPNIDE 69 (212)
T ss_dssp CCCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGG--TTCSEEEEEEECSCGGG
T ss_pred cccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHH--hCCCEEEECCCCCCCCc
Confidence 467888887665444 3356778888898877665431 23444 45999999999 53332
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.....+.+.+++ .++++++.+||-|..+|+.+
T Consensus 70 ~~~~~~~l~~~~---~~~~~PiLGIC~G~Qll~~~ 101 (212)
T 2a9v_A 70 ELDKLGSVGKYI---DDHNYPILGICVGAQFIALH 101 (212)
T ss_dssp TGGGHHHHHHHH---HHCCSCEEEETHHHHHHHHH
T ss_pred ccccchhHHHHH---HhCCCCEEEEChHHHHHHHH
Confidence 211233444444 47899999999999999875
No 87
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=97.23 E-value=0.00089 Score=76.60 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=71.8
Q ss_pred CCcEEEEEeCCCCcH-HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 83 PPKKVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 83 ~~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
...||+|+.++|..- .+ +..+|+++|+++.++.... + ..+. .+. .+||.|++|||....+.
T Consensus 1046 ~~pkVaIi~~~G~N~~~~---~~~A~~~aG~~~~~v~~~d---l--------~~~~--~~l--~~~d~lvlPGGfSygD~ 1107 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVE---MAAAFHRAGFDAIDVHMSD---L--------LGGR--IGL--GNFHALVACGGFSYGDV 1107 (1303)
T ss_dssp CCCEEEEEECTTCCCHHH---HHHHHHHTTCEEEEEEHHH---H--------HTTS--CCG--GGCSEEEECCSCGGGGT
T ss_pred CCCEEEEEecCCcCCHHH---HHHHHHHhCCceEEEeecc---c--------ccCc--ccH--hhCCEEEECCCCcchhh
Confidence 456999999999775 55 4678889999998875421 0 0000 112 37999999999532222
Q ss_pred ----------ccCChHHHHHHHHHH-hcCCeEEEEchhhHHhhhcC-CCCCCc
Q 012037 162 ----------LRDCEILKKITSKQA-EEKRLYGAICAAPAVTLLPW-GLLRRK 202 (472)
Q Consensus 162 ----------l~~~~~~~~~l~~~~-~~~k~I~aic~g~~~lLa~a-GlL~g~ 202 (472)
...++.+.+.+++++ +.++++.+||.|-+ +|.++ |||.|.
T Consensus 1108 l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~ 1159 (1303)
T 3ugj_A 1108 LGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGS 1159 (1303)
T ss_dssp TSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTC
T ss_pred hccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCC
Confidence 234567778888865 68999999999766 79988 999885
No 88
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=97.21 E-value=0.00054 Score=61.68 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=59.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE 166 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~ 166 (472)
|+|+=+.+.. ...+.+.|+++|+++.++..+. .+++....+||+|++|||. ... +..
T Consensus 3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~----------------~~~~~~~~~~dglil~Gg~-~~~---~~~ 59 (189)
T 1wl8_A 3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT----------------PLEEIKAMNPKGIIFSGGP-SLE---NTG 59 (189)
T ss_dssp EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC----------------CHHHHHHTCCSEEEECCCS-CTT---CCT
T ss_pred EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC----------------ChHHhcccCCCEEEECCCC-Chh---hhh
Confidence 6666554433 3467899999999998887542 1111111259999999994 332 245
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...++++++.+++++|.+||.|.. +|+.+
T Consensus 60 ~~~~~i~~~~~~~~PilGIC~G~Q-~l~~~ 88 (189)
T 1wl8_A 60 NCEKVLEHYDEFNVPILGICLGHQ-LIAKF 88 (189)
T ss_dssp THHHHHHTGGGTCSCEEEETHHHH-HHHHH
T ss_pred hHHHHHHHHhhCCCeEEEEcHHHH-HHHHH
Confidence 568899877789999999999766 67765
No 89
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.00052 Score=61.62 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=56.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc-cc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER-LQ 366 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-~~ 366 (472)
|||+|+-.+|- +....+.|+++|+++.++.. + +++ .++|.|++|||...... +.
T Consensus 1 m~i~vl~~~g~----~~~~~~~l~~~G~~~~~~~~----------------~---~~~--~~~dglil~GG~~~~~~~~~ 55 (186)
T 2ywj_A 1 MIIGVLAIQGD----VEEHEEAIKKAGYEAKKVKR----------------V---EDL--EGIDALIIPGGESTAIGKLM 55 (186)
T ss_dssp CEEEEECSSSC----CHHHHHHHHHTTSEEEEECS----------------G---GGG--TTCSEEEECCSCHHHHHHHH
T ss_pred CEEEEEecCcc----hHHHHHHHHHCCCEEEEECC----------------h---HHh--ccCCEEEECCCCchhhhhhh
Confidence 57899866442 22346899999998876642 0 123 56899999999632211 11
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+.++++ +++++|.+||-|..+|+.+
T Consensus 56 ~~~~~~~~i~---~~~~PilGIC~G~Qll~~~ 84 (186)
T 2ywj_A 56 KKYGLLEKIK---NSNLPILGTCAGMVLLSKG 84 (186)
T ss_dssp HHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred hccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence 1223555655 7889999999999999976
No 90
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=97.13 E-value=0.0004 Score=64.53 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=60.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhC---CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRA---GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~a---g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.++|+|+.+++. +....+.|+++ |+++.++... ++.+ ++|+||+|||.....
T Consensus 3 ~~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~-------------------~~l~--~~dglil~GG~~~~~ 57 (227)
T 2abw_A 3 EITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRNV-------------------HDLG--LCDGLVIPGGESTTV 57 (227)
T ss_dssp CEEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECSH-------------------HHHH--TCSEEEECCSCHHHH
T ss_pred CcEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcCc-------------------cccc--cCCEEEECCCcHHHH
Confidence 468999977653 23468888888 8776655311 1122 589999999952221
Q ss_pred -cccCC--hHHHHHHHHHHhc-CCeEEEEchhhHHhhhcC
Q 012037 161 -RLRDC--EILKKITSKQAEE-KRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 161 -~l~~~--~~~~~~l~~~~~~-~k~I~aic~g~~~lLa~a 196 (472)
.+..+ ..+.++|+++.+. +++|.+||.|.+ +|+.+
T Consensus 58 ~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~ 96 (227)
T 2abw_A 58 RRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN 96 (227)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence 22232 5678999999999 999999999755 67765
No 91
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=97.10 E-value=0.00073 Score=61.45 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=58.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCC-----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAK-----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~-----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
|||+|+-+..-+..++ .+.|++.| ++++++.. . + + .++|.||+|||....
T Consensus 1 m~I~iid~~~g~~~s~---~~~l~~~G~~~~~~~~~~~~~--~-------------~----~---~~~dglilpG~g~~~ 55 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNL---YRGVKRASENFEDVSIELVES--P-------------R----N---DLYDLLFIPGVGHFG 55 (201)
T ss_dssp CEEEEECCSSSCCHHH---HHHHHHHSTTBSSCEEEEECS--C-------------C----S---SCCSEEEECCCSCSH
T ss_pred CEEEEEecCCchHHHH---HHHHHHcCCCCCceEEEEECC--C-------------c----c---cCCCEEEECCCCcHH
Confidence 5789987763333333 36777777 77776542 1 1 1 468999999953111
Q ss_pred hccc--ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 363 ERLQ--KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 363 ~~~~--~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
+... .+..+.++|+++.+++++|.+||.|..+|+.+.
T Consensus 56 ~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~ 94 (201)
T 1gpw_B 56 EGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES 94 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred HHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence 1111 111367899999899999999999999999874
No 92
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=97.05 E-value=0.00063 Score=61.66 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=57.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCCh
Q 012037 87 VLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCE 166 (472)
Q Consensus 87 V~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~ 166 (472)
|+|+=..+.. ...+.+.|+++|+++.++..+.. .+++....+||+|+++||........+.+
T Consensus 4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dglil~gG~~~~~~~~~~~ 65 (195)
T 1qdl_B 4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI---------------SIKGIERIDPDRLIISPGPGTPEKREDIG 65 (195)
T ss_dssp EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS---------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC---------------CHHHHhhCCCCEEEECCCCCChhhhhhhh
Confidence 7766543322 23678899999999988875421 11122212589999988743332221122
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
...+++++. +.+++|.+||-|.+ +|+.+
T Consensus 66 ~~~~~i~~~-~~~~PvLGIC~G~Q-lL~~~ 93 (195)
T 1qdl_B 66 VSLDVIKYL-GKRTPILGVCLGHQ-AIGYA 93 (195)
T ss_dssp THHHHHHHH-TTTSCEEEETHHHH-HHHHH
T ss_pred HHHHHHHHh-cCCCcEEEEehHHH-HHHHH
Confidence 346888874 88999999999766 67765
No 93
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=96.94 E-value=0.0011 Score=59.46 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=54.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc-cc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR-LR 163 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~-l~ 163 (472)
+||+|+-..| .+....+.|+++|+++.++... ++.. ++|.|++|||...... +.
T Consensus 1 m~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------~~~~--~~dglil~GG~~~~~~~~~ 55 (186)
T 2ywj_A 1 MIIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------EDLE--GIDALIIPGGESTAIGKLM 55 (186)
T ss_dssp CEEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------GGGT--TCSEEEECCSCHHHHHHHH
T ss_pred CEEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------HHhc--cCCEEEECCCCchhhhhhh
Confidence 4799986543 2334579999999988776521 1122 6899999999432211 11
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
....+.++++ +.+++|.+||-|.+ +|+.+
T Consensus 56 ~~~~~~~~i~---~~~~PilGIC~G~Q-ll~~~ 84 (186)
T 2ywj_A 56 KKYGLLEKIK---NSNLPILGTCAGMV-LLSKG 84 (186)
T ss_dssp HHTTHHHHHH---TCCCCEEEETHHHH-HHSSC
T ss_pred hccCHHHHHH---hcCCcEEEECHHHH-HHHHH
Confidence 1223455665 78999999999755 78776
No 94
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=96.92 E-value=0.0019 Score=58.69 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCC-----CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAG-----AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag-----~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
+||+|+-+..-... ...+.|++.| +++.++... ++ .++|.|++|||. ..
T Consensus 1 m~I~iid~~~g~~~---s~~~~l~~~G~~~~~~~~~~~~~~-------------------~~---~~~dglilpG~g-~~ 54 (201)
T 1gpw_B 1 MRIGIISVGPGNIM---NLYRGVKRASENFEDVSIELVESP-------------------RN---DLYDLLFIPGVG-HF 54 (201)
T ss_dssp CEEEEECCSSSCCH---HHHHHHHHHSTTBSSCEEEEECSC-------------------CS---SCCSEEEECCCS-CS
T ss_pred CEEEEEecCCchHH---HHHHHHHHcCCCCCceEEEEECCC-------------------cc---cCCCEEEECCCC-cH
Confidence 47888865522223 3457888888 787766421 02 269999999962 21
Q ss_pred cc-cc--CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 160 VR-LR--DCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 160 ~~-l~--~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
.. .. .+..+.++|+++.+++++|.+||.|.. +|+.+.
T Consensus 55 ~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~~ 94 (201)
T 1gpw_B 55 GEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEES 94 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-TTSSEE
T ss_pred HHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHH-HHHHhh
Confidence 11 10 111367899999999999999999755 677753
No 95
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=96.91 E-value=0.0032 Score=62.86 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
+||+++=+ |+. ....+.|..+|.++.++-.+. ..+++...++|.||++||+..+. .
T Consensus 191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~----------------~~e~i~~~~~DGliLsGGPgdp~---~ 246 (379)
T 1a9x_B 191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT----------------SAEDVLKMNPDGIFLSNGPGDPA---P 246 (379)
T ss_dssp EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC----------------CHHHHHTTCCSEEEECCCSBCST---T
T ss_pred CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC----------------CHHHHhhcCCCEEEEeCCCCChH---H
Confidence 58888877 665 447888999998888774332 12333224689999999974333 3
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+++|+++.+++++|.+||-|-.+|+.+
T Consensus 247 ~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A 277 (379)
T 1a9x_B 247 CDYAITAIQKFLETDIPVFGICLGHQLLALA 277 (379)
T ss_dssp CHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence 4678899999998899999999999999865
No 96
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=96.77 E-value=0.00065 Score=62.23 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.+||+|+=|-.-+. -.+...|++.|++++++.. .+++ .++|.||+||+. ......
T Consensus 2 ~~~I~iiD~g~~n~---~si~~al~~~G~~~~v~~~-------------------~~~l--~~~D~lilPG~g-~~~~~~ 56 (211)
T 4gud_A 2 TQNVVIIDTGCANI---SSVKFAIERLGYAVTISRD-------------------PQVV--LAADKLFLPGVG-TASEAM 56 (211)
T ss_dssp -CCEEEECCCCTTH---HHHHHHHHHTTCCEEEECC-------------------HHHH--HHCSEEEECCCS-CHHHHH
T ss_pred CCEEEEEECCCChH---HHHHHHHHHCCCEEEEECC-------------------HHHH--hCCCEEEECCCC-CHHHHH
Confidence 45788885543333 4567788999998876421 1233 467999999953 222211
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.......+++...+.+++|.+||.|-.+|+.+
T Consensus 57 ~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~ 88 (211)
T 4gud_A 57 KNLTERDLIELVKRVEKPLLGICLGMQLLGKL 88 (211)
T ss_dssp HHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred HHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence 22223345777788999999999999999865
No 97
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=96.72 E-value=0.00054 Score=62.78 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=54.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
++||+|+=+..- -+..+..+|++.|++++++... ++.. .+|.||+||+ +......
T Consensus 2 ~~~I~iiD~g~~---n~~si~~al~~~G~~~~v~~~~-------------------~~l~--~~D~lilPG~-g~~~~~~ 56 (211)
T 4gud_A 2 TQNVVIIDTGCA---NISSVKFAIERLGYAVTISRDP-------------------QVVL--AADKLFLPGV-GTASEAM 56 (211)
T ss_dssp -CCEEEECCCCT---THHHHHHHHHHTTCCEEEECCH-------------------HHHH--HCSEEEECCC-SCHHHHH
T ss_pred CCEEEEEECCCC---hHHHHHHHHHHCCCEEEEECCH-------------------HHHh--CCCEEEECCC-CCHHHHH
Confidence 457888744322 2355678899999998875311 1122 5899999996 2332211
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..-....+++...+.++||.+||.|-. +|+.+
T Consensus 57 ~~~~~~~~i~~~~~~~~PvlGIClG~Q-lL~~~ 88 (211)
T 4gud_A 57 KNLTERDLIELVKRVEKPLLGICLGMQ-LLGKL 88 (211)
T ss_dssp HHHHHTTCHHHHHHCCSCEEEETHHHH-TTSSE
T ss_pred HHHHhcChHHHHHHcCCCEEEEchhHh-HHHHH
Confidence 122233457777889999999999755 67665
No 98
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=96.67 E-value=0.0032 Score=58.91 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=60.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 165 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~ 165 (472)
||.|+- .+.......+.+.|+..|+++.++-.+.+ . .+.+ ....+|.||+|||..+.......
T Consensus 14 ~~~~i~--~~~~~~~~~i~~~l~~~G~~v~v~~~~~~--------~------~~~~-~l~~~Dglil~GG~~~~~~~~~~ 76 (239)
T 1o1y_A 14 RVLAIR--HVEIEDLGMMEDIFREKNWSFDYLDTPKG--------E------KLER-PLEEYSLVVLLGGYMGAYEEEKY 76 (239)
T ss_dssp EEEEEC--SSTTSSCTHHHHHHHHTTCEEEEECGGGT--------C------CCSS-CGGGCSEEEECCCSCCTTCTTTC
T ss_pred EEEEEE--CCCCCCchHHHHHHHhCCCcEEEeCCcCc--------c------cccc-chhcCCEEEECCCCccccCCccC
Confidence 455554 44444455788899999998876543321 0 1111 11369999999985333211111
Q ss_pred ---hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 166 ---EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 166 ---~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
....++|+++.+++++|.+||-|.. +|+.+
T Consensus 77 ~~l~~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a 109 (239)
T 1o1y_A 77 PFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV 109 (239)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence 3678999999999999999999765 67765
No 99
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=96.59 E-value=0.0013 Score=63.37 Aligned_cols=102 Identities=9% Similarity=0.056 Sum_probs=63.1
Q ss_pred CCEEEEE-eCCCCCHHHHHHHHHHHHhCCC----eEEEEEecCCcceecCCCcEEeecC-Ccccc--CCCcccEEEEcCC
Q 012037 287 MPRVLIP-IANGSEEIEIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADK-SISDA--AESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il-~~~g~~~~e~~~~~d~l~~a~~----~v~~vs~~~~~~v~s~~G~~v~~d~-~l~~~--~~~~~D~livpGG 358 (472)
.+||+|+ -|.+.... +..+.+.|+.+|+ ++.+...+.. .+... .+..+. .++++ ...++|.||||||
T Consensus 25 ~~~Iavv~d~~~~~~s-~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG 99 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDC-YASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGG 99 (289)
T ss_dssp EEEEEEEESCSSCCGG-GHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSC
T ss_pred ceEEEEEecCcCCCcc-HHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCC
Confidence 3588887 55344320 3467778877753 4565555432 11110 000010 01110 0156899999999
Q ss_pred CcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 359 VAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
... . ....+.++++++.+++++|.+||.|..+|+.
T Consensus 100 ~~~-~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~ 134 (289)
T 2v4u_A 100 FGI-R---GTLGKLQAISWARTKKIPFLGVXLGMQLAVI 134 (289)
T ss_dssp CSS-T---THHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred CCc-h---hHHHHHHHHHHHHHcCCcEEEECccHHHHHH
Confidence 743 2 2367889999999999999999999999986
No 100
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=96.58 E-value=0.0012 Score=61.57 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=65.4
Q ss_pred CCCEEEEEeCCC---CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANG---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g---~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
..+||+|+-|-. -...-+......|++.|+++..+... +...+++ .+.|.|++|||....
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~---------------~d~~~~l--~~ad~I~lpGG~~~~ 92 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRV---------------ADPLAAI--EKAEIIIVGGGNTFQ 92 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSS---------------SCHHHHH--HHCSEEEECCSCHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecc---------------ccHHHHH--hcCCEEEECCCcHHH
Confidence 357899987752 22233556778899988876544211 1122344 568999999986211
Q ss_pred -hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 363 -ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 363 -~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
....+...+.+.|+++.++|++++++|.|..+|++..
T Consensus 93 ~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 93 LLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 1122344678899999999999999999999998743
No 101
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=96.41 E-value=0.0024 Score=58.40 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=66.9
Q ss_pred CCEEEEEeCCCC---CHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc-h
Q 012037 287 MPRVLIPIANGS---EEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG-A 362 (472)
Q Consensus 287 ~~~V~il~~~g~---~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~-~ 362 (472)
.+||+++-|-.- ...-+......|++.|++++++..... .++...+.+ .+.|.|++|||... .
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l--~~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKL--RKNDFIYVTGGNTFFL 93 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHH--HHSSEEEECCSCHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHH--HhCCEEEECCCCHHHH
Confidence 479999876421 112345678999999998876643221 011111233 56799999998621 1
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+...+.+.|++..++|++++++|.|+.+++..
T Consensus 94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 94 LQELKRTGADKLILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred HHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence 122345678899999999999999999999999753
No 102
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=96.05 E-value=0.0019 Score=59.59 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=54.3
Q ss_pred CCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 287 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 287 ~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
.++|+|+=+. ++. ..+...|+.+|+++.++..+.. .+++...++|.||+|||......
T Consensus 24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~----------------~~~l~~~~~dglil~Gg~~~~~~- 82 (218)
T 2vpi_A 24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGPNSVYA- 82 (218)
T ss_dssp TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC----------------HHHHHHHTCSEEEEEC--------
T ss_pred CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC----------------hHHHhhcCCCEEEECCCCccccc-
Confidence 3689999665 453 3577888999988887754431 22332246999999999632211
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+....+.+...+++++|.+||.|..+|+.+
T Consensus 83 ---~~~~~~~~~~~~~~~PilGIC~G~Qll~~~ 112 (218)
T 2vpi_A 83 ---EDAPWFDPAIFTIGKPVLGICYGMQMMNKV 112 (218)
T ss_dssp -----CCCCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred ---ccchhHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 111112233346789999999999999875
No 103
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=95.93 E-value=0.013 Score=53.57 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=55.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC-cccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG-MPGSVR 161 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG-~~~~~~ 161 (472)
.|+||.++=+.+-. ...+.+.|+++|+++.++..+. ..++.. .+|+|||||| ......
T Consensus 12 ~~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~----------------~~~~l~--~~DglIl~GG~p~~~~~ 70 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI----------------DSSELD--GLDGLVLSGGAPNIDEE 70 (212)
T ss_dssp CCCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS----------------CGGGGT--TCSEEEEEEECSCGGGT
T ss_pred ccceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC----------------CHHHHh--CCCEEEECCCCCCCCcc
Confidence 36688777654433 2346788889998877765431 112233 4999999999 433332
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
....+.+.+++ .+++++|.+||-|.. +|+.+
T Consensus 71 ~~~~~~l~~~~---~~~~~PiLGIC~G~Q-ll~~~ 101 (212)
T 2a9v_A 71 LDKLGSVGKYI---DDHNYPILGICVGAQ-FIALH 101 (212)
T ss_dssp GGGHHHHHHHH---HHCCSCEEEETHHHH-HHHHH
T ss_pred cccchhHHHHH---HhCCCCEEEEChHHH-HHHHH
Confidence 21223344443 578999999999766 67765
No 104
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=95.87 E-value=0.019 Score=55.39 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecC-C-CcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVAS-Q-GVKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~-~-G~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
+++||+|+-...-....-..+...|.... ++++++....+..-.++ . =-++.. .++++...+||.+||-|+...
T Consensus 34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~--~f~~~~~~~~DglIITGap~~ 111 (301)
T 2vdj_A 34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYK--TFRDIENEKFDGLIITGAPVE 111 (301)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEE--CHHHHTTSCEEEEEECCCTTT
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhccc--CcccccccccCEEEECCCCCc
Confidence 45799999764332222234555555544 55555555432111111 1 111111 355555578999999998732
Q ss_pred hh---cccccHHHHHHHHHHHHcCCeEEEEchhHHH-HHHcC
Q 012037 362 AE---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHG 399 (472)
Q Consensus 362 ~~---~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l-LA~aG 399 (472)
.. ...--+++.++++...++++.+.+||-|..+ +..+|
T Consensus 112 ~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~ 153 (301)
T 2vdj_A 112 TLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY 153 (301)
T ss_dssp TSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred CCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhC
Confidence 21 1122256778888888899999999999998 44443
No 105
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=95.87 E-value=0.017 Score=55.69 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeeeC-CCcCCCCCCcccEEEEcCCcc
Q 012037 81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVAD-TSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~d-~~~~~~~~~~~D~vivpGG~~ 157 (472)
.++++||+||-...-....-..+...|.... ++++++....+ ......-..+..- .++++.....||++||.|+..
T Consensus 32 ~irplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~ 110 (301)
T 2vdj_A 32 DIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESH-LSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPV 110 (301)
T ss_dssp TSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC-------------CCEECHHHHTTSCEEEEEECCCTT
T ss_pred CCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCC-CCCCccHHHHhhcccCcccccccccCEEEECCCCC
Confidence 5778999999864333222233444444444 55555555433 1111000111110 123333345799999999842
Q ss_pred ccccc---cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 158 GSVRL---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 158 ~~~~l---~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
..... .--.++.++++...++++++.+||-|...++..+|
T Consensus 111 ~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~ 153 (301)
T 2vdj_A 111 ETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHY 153 (301)
T ss_dssp TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred cCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhC
Confidence 22111 11267888888888999999999998775355443
No 106
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=95.84 E-value=0.024 Score=54.02 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=60.5
Q ss_pred CEEEEEe-C-CCCCHHHHHHHHHHHHhC----CCeEEEEEecCCcceecCCCcEEeecCCc-cccCCCcccEEEEcCCCc
Q 012037 288 PRVLIPI-A-NGSEEIEIVTIVDILRRA----KVDVVVASVERSTQIVASQGVKIIADKSI-SDAAESVYDLIILPGGVA 360 (472)
Q Consensus 288 ~~V~il~-~-~g~~~~e~~~~~d~l~~a----~~~v~~vs~~~~~~v~s~~G~~v~~d~~l-~~~~~~~~D~livpGG~~ 360 (472)
.+|+|+. | ..+.+ .+..+...|..+ +.+++++..+.. .+....+.. + +++ .++|.||+|||..
T Consensus 9 ~~Iaivg~y~~~~~d-ny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~~------~~~~~--~~~dgiil~GG~~ 78 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGD-TYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNADE------ARKAL--LGCDGIFVPGGFG 78 (273)
T ss_dssp EEEEEEECCHHHHTT-TTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTHH------HHHHH--HTCSEEEECCCCT
T ss_pred CEEEEEeCCCcCCch-HHHHHHHHHHHHHHhcCCceEEeccChh-hcccccchh------HHHHH--hhCCEEEecCCCC
Confidence 6888884 4 11122 344555555443 466777766643 222111100 2 223 5689999999963
Q ss_pred chhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 361 GAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 361 ~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
.. ..+..+++++.+.+++++|.+||-|..+|+.
T Consensus 79 -~~---~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~ 111 (273)
T 2w7t_A 79 -NR---GVDGKCAAAQVARMNNIPYFGVXLGMQVAVI 111 (273)
T ss_dssp -TT---THHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred -Cc---CchhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence 22 3346778999988899999999999999975
No 107
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=95.84 E-value=0.017 Score=55.92 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCCceeee-CCCcCCCCCCcccEEEEcCCcc
Q 012037 81 AVPPKKVLVPVGFGTEEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSGTRLVA-DTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 81 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G~~v~~-d~~~~~~~~~~~D~vivpGG~~ 157 (472)
.++++||+||-...-....-..+...|.... ++++++....+ ......-..+.. -.++++.....||++||.|+..
T Consensus 44 dirplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~-~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~ 122 (312)
T 2h2w_A 44 DIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETH-KPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPV 122 (312)
T ss_dssp -CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCC-CCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSC
T ss_pred CCCCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCC-CCCCccHHHHhhccCCcccccccCcCEEEECCCCC
Confidence 5778999999864333222234555555544 45555555433 100000000100 0134555455799999999842
Q ss_pred ccccc---cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 158 GSVRL---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 158 ~~~~l---~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
..... .--.++.++++...++++++.+||-|...++..+|
T Consensus 123 ~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~ 165 (312)
T 2h2w_A 123 ELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFY 165 (312)
T ss_dssp TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred CCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhC
Confidence 22111 11267888888888999999999998775355543
No 108
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=95.80 E-value=0.02 Score=54.00 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCc-chh-------------cccccHH
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA-GAE-------------RLQKSRI 370 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~-~~~-------------~~~~~~~ 370 (472)
..++.++++|....++..... ..+.+. .+++|.|+++||.. .+. ...++..
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~--------------~~~~~~-l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~ 96 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDP--------------STAVQA-ISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSY 96 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCG--------------GGHHHH-HHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCc--------------hHHHHH-HhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHH
Confidence 356677778887777654431 012211 14689999999952 011 1122345
Q ss_pred HHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 371 LKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 371 l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+++|+++.+++++|.+||-|..+|+.+
T Consensus 97 ~~~lir~a~~~~~PiLGIC~G~Qll~~a 124 (254)
T 3fij_A 97 EIALVRAALDAGKPIFAICRGMQLVNVA 124 (254)
T ss_dssp HHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence 7899999999999999999999999876
No 109
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=95.78 E-value=0.026 Score=56.28 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
..||+++=+ |+. ....+.|+++|+++.++-.+.. .+++...++|.||++||...+.
T Consensus 190 ~~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~~----------------~e~i~~~~~DGliLsGGPgdp~--- 245 (379)
T 1a9x_B 190 PFHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQTS----------------AEDVLKMNPDGIFLSNGPGDPA--- 245 (379)
T ss_dssp CEEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTCC----------------HHHHHTTCCSEEEECCCSBCST---
T ss_pred CCEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccCC----------------HHHHhhcCCCEEEEeCCCCChH---
Confidence 357888876 654 4478889999999888854421 0111112599999999943332
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+...+++|+++.+++++|.+||-|-+ +|+.+
T Consensus 246 ~~~~~~~~Ir~~~~~~~PILGIClG~Q-LLa~A 277 (379)
T 1a9x_B 246 PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA 277 (379)
T ss_dssp TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECchHH-HHHHH
Confidence 357788999999999999999999766 67664
No 110
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=95.71 E-value=0.0095 Score=62.77 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC-Ccchh-
Q 012037 287 MPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG-VAGAE- 363 (472)
Q Consensus 287 ~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG-~~~~~- 363 (472)
|++|+|+-|. ++. ....+.|+++|+++.++.... + ..+ .++|.||+||| .....
T Consensus 4 m~~I~Iid~~~g~~----~~~~~~l~~~G~~~~vv~~~~--------------~---~~l--~~~DglILpGgG~~~~~~ 60 (555)
T 1jvn_A 4 MPVVHVIDVESGNL----QSLTNAIEHLGYEVQLVKSPK--------------D---FNI--SGTSRLILPGVGNYGHFV 60 (555)
T ss_dssp SCEEEEECCSCSCC----HHHHHHHHHTTCEEEEESSGG--------------G---CCS--TTCSCEEEEECSCHHHHH
T ss_pred CCEEEEEECCCCCH----HHHHHHHHHCCCEEEEECCcc--------------c---ccc--ccCCEEEECCCCchHhHh
Confidence 6789999875 332 356788899999888764211 0 123 56899999994 31111
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....+..+.++|+++.+++++|.+||-|..+|+.+
T Consensus 61 ~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a 95 (555)
T 1jvn_A 61 DNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG 95 (555)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred hhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence 01112246789999999999999999999999985
No 111
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=95.58 E-value=0.0067 Score=55.40 Aligned_cols=98 Identities=18% Similarity=0.093 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCC--c-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-c
Q 012037 84 PKKVLVPVGFGT--E-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-S 159 (472)
Q Consensus 84 ~~kV~ill~~g~--~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~ 159 (472)
.+||+|+-+-.- + ..-+....++|++.|++++.+..... .++...+.+. ..|+|++|||... .
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~-----------~~~~~~~~l~--~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE-----------SLGEITTKLR--KNDFIYVTGGNTFFL 93 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS-----------CHHHHHHHHH--HSSEEEECCSCHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC-----------ChHHHHHHHH--hCCEEEECCCCHHHH
Confidence 578998875322 1 12345688999999998877643310 0000001122 5899999998421 1
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
........+.+.|++.+++|++++++|+| +.+|+.
T Consensus 94 ~~~L~~~gl~~~l~~~~~~G~p~~G~sAG-a~~l~~ 128 (206)
T 3l4e_A 94 LQELKRTGADKLILEEIAAGKLYIGESAG-AVITSP 128 (206)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCEEEEETHH-HHTTSS
T ss_pred HHHHHHCChHHHHHHHHHcCCeEEEECHH-HHHhcc
Confidence 12234567888999999999999999996 546654
No 112
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=95.57 E-value=0.0068 Score=56.32 Aligned_cols=96 Identities=17% Similarity=0.075 Sum_probs=61.3
Q ss_pred CcEEEEEeCCC--Cc-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc-c
Q 012037 84 PKKVLVPVGFG--TE-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG-S 159 (472)
Q Consensus 84 ~~kV~ill~~g--~~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~-~ 159 (472)
.+||+|+-+.. .+ ..-+..+.++|++.|+++..+.... | ..+.+. +.|+|++|||... .
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~--------------d-~~~~l~--~ad~I~lpGG~~~~~ 93 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVA--------------D-PLAAIE--KAEIIIVGGGNTFQL 93 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSS--------------C-HHHHHH--HCSEEEECCSCHHHH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccc--------------c-HHHHHh--cCCEEEECCCcHHHH
Confidence 57899987652 22 2334567888988898765442110 0 112222 5899999998421 1
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCC
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWG 197 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aG 197 (472)
........+.+.|++.+++|++++++|+| +.+|++..
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG-~~~l~~~~ 130 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAG-ANLACPTI 130 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHH-HHHTSSBS
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHH-HHhhcccc
Confidence 12223456778899999999999999996 55677643
No 113
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.025 Score=58.25 Aligned_cols=155 Identities=12% Similarity=0.034 Sum_probs=88.0
Q ss_pred EEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhccccccCCc--chhhhccccccc-ccCCCCEEEEEeCC-CCCH
Q 012037 225 HVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHNADN--SLKKEEFNEVEW-FFDRMPRVLIPIAN-GSEE 300 (472)
Q Consensus 225 v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~~~~--~~~~~~~n~~~~-~~~~~~~V~il~~~-g~~~ 300 (472)
|...+++...+..+-.+.=+. +..+...+.+.+.|-++.... .+|..-.+.+.- +.....+|+++--- +..
T Consensus 232 V~~~~VI~i~DvdtiY~vpl~----L~~qGl~~~~~~~l~l~~~~~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~- 306 (535)
T 3nva_A 232 VKVDHIVSSYDVETSYEVPII----LESQKLVSKILSRLKLEDRQVDLTDWISFVNNIKGINSKKTINIALVGKYTKLK- 306 (535)
T ss_dssp CCGGGEEEEECCSCGGGHHHH----HHHHTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSG-
T ss_pred CChhceEecCCCChHHHhHHH----HHHCCcHHHHHHHcCCCCCCCCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCc-
Confidence 344678888777655443233 333455666667776653221 122211111110 12344678877542 332
Q ss_pred HHHHHHHHHHHhCC----CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHH
Q 012037 301 IEIVTIVDILRRAK----VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLK 376 (472)
Q Consensus 301 ~e~~~~~d~l~~a~----~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~ 376 (472)
-.+..+.+.|..++ .++++.-.+.. .+... +. ...+++ .++|.|++|||.+. . .....+++++
T Consensus 307 DaY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~~-----~~~~~L--~~~DgIIlpGG~G~-~---~~~g~i~~ir 373 (535)
T 3nva_A 307 DSYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-TK-----NLNEIL--GNVNGIIVLPGFGS-R---GAEGKIKAIK 373 (535)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-SS-----CCTTTT--TSCSEEEECCCCSS-T---THHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-cc-----chhhhc--cCCCEEEECCCCCC-c---cHHHHHHHHH
Confidence 23345666666654 55665544432 12111 10 012333 67999999999743 2 3467889999
Q ss_pred HHHHcCCeEEEEchhHHHHHH
Q 012037 377 EQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 377 ~~~~~g~~v~aic~G~~lLA~ 397 (472)
.+.++++++.+||-|..+|+.
T Consensus 374 ~a~~~~~PiLGIClG~Qll~v 394 (535)
T 3nva_A 374 YAREHNIPFLGICFGFQLSIV 394 (535)
T ss_dssp HHHHHTCCEEEETHHHHHHHH
T ss_pred HHHHcCCcEEEECcchhHHHH
Confidence 999999999999999988764
No 114
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=95.55 E-value=0.073 Score=51.51 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=65.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCC--CeEEEEEecCCcceecCC--CcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAK--VDVVVASVERSTQIVASQ--GVKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~--~~v~~vs~~~~~~v~s~~--G~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
+++||+|+-...-....-..+...|.... ++++++....+..-.++. =-++. .+++++...+||.+||-|+...
T Consensus 46 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y--~~f~~~~~~~~DglIITGsP~~ 123 (312)
T 2h2w_A 46 RPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFY--TTFSAVKDRKFDGFIITGAPVE 123 (312)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHC--BCGGGTTTCCEEEEEECCCSCT
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhcc--CCcccccccCcCEEEECCCCCC
Confidence 45799999764332222245566666555 455555444320000000 00011 1466655578999999999732
Q ss_pred hh---cccccHHHHHHHHHHHHcCCeEEEEchhHHH-HHHcC
Q 012037 362 AE---RLQKSRILKKLLKEQKVAGRIYGAVCSSPIV-LHKHG 399 (472)
Q Consensus 362 ~~---~~~~~~~l~~~L~~~~~~g~~v~aic~G~~l-LA~aG 399 (472)
.. ...--+++.++++...++++.+.+||-|..+ +..+|
T Consensus 124 ~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~ 165 (312)
T 2h2w_A 124 LLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFY 165 (312)
T ss_dssp TSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhC
Confidence 21 1122256778888777899999999999998 44443
No 115
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=95.49 E-value=0.056 Score=56.83 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=60.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
..+|+|+=|-.-.. -.+...|++.|..++++..+. .++++...++|.||+|||.......
T Consensus 7 ~~~IlilD~Gs~~~---~~I~r~lre~Gv~~eiv~~~~----------------~~~~i~~~~~dgIIlsGGp~s~~~~- 66 (556)
T 3uow_A 7 YDKILVLNFGSQYF---HLIVKRLNNIKIFSETKDYGV----------------ELKDIKDMNIKGVILSGGPYSVTEA- 66 (556)
T ss_dssp CCEEEEEESSCTTH---HHHHHHHHHTTCCEEEEETTC----------------CGGGTTTSCEEEEEECCCSCCTTST-
T ss_pred CCEEEEEECCCccH---HHHHHHHHHCCCeEEEEECCC----------------CHHHHhhcCCCEEEECCCCCccccc-
Confidence 36788886654343 356778888998888775432 2344433478999999997433211
Q ss_pred ccHHH-HHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 KSRIL-KKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 ~~~~l-~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
..+.+ ..+++.+.+++++|.+||-|..+|+.+
T Consensus 67 ~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~ 99 (556)
T 3uow_A 67 GSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ 99 (556)
T ss_dssp TCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred CCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence 11111 234444567799999999999999976
No 116
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=95.45 E-value=0.011 Score=62.41 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=59.7
Q ss_pred CcEEEEEeCC-CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGF-GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~-g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|++|+|+-+. ++ +....+.|+++|+++.++.... . .... .+|.|++||| +.....
T Consensus 4 m~~I~Iid~~~g~----~~~~~~~l~~~G~~~~vv~~~~--~---------------~~l~--~~DglILpGg-G~~~~~ 59 (555)
T 1jvn_A 4 MPVVHVIDVESGN----LQSLTNAIEHLGYEVQLVKSPK--D---------------FNIS--GTSRLILPGV-GNYGHF 59 (555)
T ss_dssp SCEEEEECCSCSC----CHHHHHHHHHTTCEEEEESSGG--G---------------CCST--TCSCEEEEEC-SCHHHH
T ss_pred CCEEEEEECCCCC----HHHHHHHHHHCCCEEEEECCcc--c---------------cccc--cCCEEEECCC-CchHhH
Confidence 5789999764 22 2457888999999888765221 0 0122 6899999995 122111
Q ss_pred ---cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 ---RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ---~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+..+.++|+++.+.+++|.+||.|.+ +|+.+
T Consensus 60 ~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~Q-lL~~a 95 (555)
T 1jvn_A 60 VDNLFNRGFEKPIREYIESGKPIMGIXVGLQ-ALFAG 95 (555)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCEEEEEHHHH-TTEEE
T ss_pred hhhhhhccHHHHHHHHHHcCCcEEEEchhhh-hhhhh
Confidence 1122357889999999999999999755 77775
No 117
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=95.01 E-value=0.0059 Score=56.28 Aligned_cols=88 Identities=15% Similarity=0.037 Sum_probs=52.2
Q ss_pred CcEEEEEeC-CCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVG-FGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
.+||+|+=+ +++. ..+...|+++|+++.++..+.. . ++.....||+|++|||......
T Consensus 24 ~~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~-~---------------~~l~~~~~dglil~Gg~~~~~~- 82 (218)
T 2vpi_A 24 EGAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP-A---------------FAIKEQGFRAIIISGGPNSVYA- 82 (218)
T ss_dssp TTCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC-H---------------HHHHHHTCSEEEEEC--------
T ss_pred CCeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC-h---------------HHHhhcCCCEEEECCCCccccc-
Confidence 368999955 4442 3567889999998888765531 0 1111135999999999432211
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.....+.++..+.+++|.+||.|.+ +|+.+
T Consensus 83 ---~~~~~~~~~~~~~~~PilGIC~G~Q-ll~~~ 112 (218)
T 2vpi_A 83 ---EDAPWFDPAIFTIGKPVLGICYGMQ-MMNKV 112 (218)
T ss_dssp -----CCCCCGGGGTSSCCEEEETHHHH-HHHHH
T ss_pred ---ccchhHHHHHHHcCCCEEEEcHHHH-HHHHH
Confidence 1111123344578999999999766 67764
No 118
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=94.68 E-value=0.098 Score=55.87 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=62.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.++|+|+=+.+.. ...+...|+..|++++++-.+.. .+. .++|.|||+||........
T Consensus 446 Gk~IlviD~gdsf---~~~l~~~l~~~G~~v~Vv~~d~~-----------------~~~--~~~DgIIlsGGPg~p~d~~ 503 (645)
T 3r75_A 446 GCRALIVDAEDHF---TAMIAQQLSSLGLATEVCGVHDA-----------------VDL--ARYDVVVMGPGPGDPSDAG 503 (645)
T ss_dssp TCEEEEEESSCTH---HHHHHHHHHHTTCEEEEEETTCC-----------------CCG--GGCSEEEECCCSSCTTCTT
T ss_pred CCEEEEEECCccH---HHHHHHHHHHCCCEEEEEECCCc-----------------ccc--cCCCEEEECCCCCChhhhh
Confidence 3677777443322 23577888899999887755431 112 4689999999875433221
Q ss_pred --ccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 367 --KSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 367 --~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.-..+.++|++..+.+++|.+||-|..+|+.+
T Consensus 504 ~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a 537 (645)
T 3r75_A 504 DPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI 537 (645)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence 11246788898888999999999999999865
No 119
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=94.56 E-value=0.051 Score=52.88 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCEEEEEeCCCCCH-H-H------HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIANGSEE-I-E------IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~g~~~-~-e------~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
.+.|+|....+... . + .....+.|+.+|.++.++..+.. ...+.+. ..++|.||+|||
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-------------~~~i~~~-l~~~dglil~GG 95 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT-------------EKDYEIL-FKSINGILFPGG 95 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-------------HHHHHHH-HHHSSEEEECCC
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC-------------HHHHHHH-HhcCCEEEEeCC
Confidence 36789887654322 0 0 12457888888988877754321 0011111 146899999999
Q ss_pred Ccchhcc---cccHHHHHHHHHHHHcC--CeEEEEchhHHHHHH
Q 012037 359 VAGAERL---QKSRILKKLLKEQKVAG--RIYGAVCSSPIVLHK 397 (472)
Q Consensus 359 ~~~~~~~---~~~~~l~~~L~~~~~~g--~~v~aic~G~~lLA~ 397 (472)
....... .....++++++++.++| ++|.+||-|..+|+.
T Consensus 96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~ 139 (315)
T 1l9x_A 96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSL 139 (315)
T ss_dssp CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHH
T ss_pred CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHH
Confidence 6332111 11235677777776664 899999999999874
No 120
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=94.45 E-value=0.15 Score=53.46 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=56.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
..+|+||=+..-. ...+...|++.|..++++..+.. .+++....+|+||+|||.......
T Consensus 7 ~~~IlilD~Gs~~---~~~I~r~lre~Gv~~eiv~~~~~----------------~~~i~~~~~dgIIlsGGp~s~~~~- 66 (556)
T 3uow_A 7 YDKILVLNFGSQY---FHLIVKRLNNIKIFSETKDYGVE----------------LKDIKDMNIKGVILSGGPYSVTEA- 66 (556)
T ss_dssp CCEEEEEESSCTT---HHHHHHHHHHTTCCEEEEETTCC----------------GGGTTTSCEEEEEECCCSCCTTST-
T ss_pred CCEEEEEECCCcc---HHHHHHHHHHCCCeEEEEECCCC----------------HHHHhhcCCCEEEECCCCCccccc-
Confidence 4678777554322 23567888999998888764421 112222369999999995333221
Q ss_pred CChHHH-HHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILK-KITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~-~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+.+. .+++.+.+++++|.+||-|-+ +|+.+
T Consensus 67 ~~~~~~~~l~~~a~~~g~PvLGIC~G~Q-lLa~~ 99 (556)
T 3uow_A 67 GSPHLKKEVFEYFLEKKIPIFGICYGMQ-EIAVQ 99 (556)
T ss_dssp TCCCCCHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred CCcchhHHHHHHhhhcCCCEEEECHHHH-HHHHH
Confidence 112222 334445667999999999766 66654
No 121
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=94.19 E-value=0.057 Score=51.40 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=58.9
Q ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 85 KKVLVPVGFG-TEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 85 ~kV~ill~~g-~~~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
.||+|+.-.| .-...+..+.+.|..+ +.++.++..+.. .++...+.. .+ ... ..+|.|++|||. +.
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~-~~~~~~~~~--~~---~~~--~~~dgiil~GG~-~~ 79 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSE-ELEGPNADE--AR---KAL--LGCDGIFVPGGF-GN 79 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGG-GGSSTTTHH--HH---HHH--HTCSEEEECCCC-TT
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChh-hcccccchh--HH---HHH--hhCCEEEecCCC-CC
Confidence 6899885332 0112455666666544 566777776642 222111100 00 112 268999999994 33
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
. ..+..+++++++.+.+++|.+||-|-+ +|+.
T Consensus 80 ~---~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~ 111 (273)
T 2w7t_A 80 R---GVDGKCAAAQVARMNNIPYFGVXLGMQ-VAVI 111 (273)
T ss_dssp T---THHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred c---CchhHHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence 2 234577899999899999999999866 5554
No 122
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=94.11 E-value=0.064 Score=56.03 Aligned_cols=88 Identities=15% Similarity=0.019 Sum_probs=56.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
.+|+|+=|..-.. ..+...|+++|..++++..+. ..+++....+|.||+|||.....
T Consensus 11 ~~I~IlD~g~~~~---~~i~r~lr~~Gv~~~i~p~~~----------------~~~~i~~~~~dgIILsGGp~sv~---- 67 (527)
T 3tqi_A 11 HRILILDFGSQYA---QLIARRVREIGVYCELMPCDI----------------DEETIRDFNPHGIILSGGPETVT---- 67 (527)
T ss_dssp SEEEEEECSCTTH---HHHHHHHHHHTCEEEEEETTC----------------CSSSSTTTCCSEEEECCCCC-------
T ss_pred CeEEEEECCCccH---HHHHHHHHHCCCeEEEEECCC----------------CHHHHHhcCCCEEEECCcCcccc----
Confidence 5899987754333 356778888998888774432 22333223569999999974321
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+.......+...+.+.+|.+||-|..+|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~ 98 (527)
T 3tqi_A 68 LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ 98 (527)
T ss_dssp ------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence 2222333455567899999999999999865
No 123
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=93.98 E-value=0.043 Score=52.69 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=60.4
Q ss_pred CcEEEEE-eCCCCcHHHHHHHHHHHHhCCC----EEEEEeeCCCcceeccCCceeeeCCC-cCCC--CCCcccEEEEcCC
Q 012037 84 PKKVLVP-VGFGTEEMEAVIIVDVLRRAGA----QVTMASVEPQLEVEASSGTRLVADTS-ISNC--SHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~il-l~~g~~~~e~~~~~~~l~~ag~----~v~~vs~~~g~~v~~~~G~~v~~d~~-~~~~--~~~~~D~vivpGG 155 (472)
..||+|+ =+.+... .+..+.+.|+++|+ ++.++..+.. .+... .+..+.. +++. ....+|+||||||
T Consensus 25 ~~~Iavv~d~~~~~~-s~~si~~~L~~~G~~~~~~v~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~dgiil~GG 99 (289)
T 2v4u_A 25 ICSIALVGKYTKLRD-CYASVFKALEHSALAINHKLNLMYIDSI-DLEKI---TETEDPVKFHEAWQKLCKADGILVPGG 99 (289)
T ss_dssp EEEEEEEESCSSCCG-GGHHHHHHHHHHHHHTTEEEEEEEEEGG-GGSHH---HHHHCHHHHHHHHHHHHHCSEEEECSC
T ss_pred ceEEEEEecCcCCCc-cHHHHHHHHHHhhhhhCCceEEEEechh-hcccc---cccCChhhhhhHHHHHhhCCEEEecCC
Confidence 3588887 3423332 14577888887754 4555555432 11110 1111111 0000 0126899999999
Q ss_pred ccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
.. ... .....++++++.+.+++|.+||.|.+ +|+.
T Consensus 100 ~~-~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~ 134 (289)
T 2v4u_A 100 FG-IRG---TLGKLQAISWARTKKIPFLGVXLGMQ-LAVI 134 (289)
T ss_dssp CS-STT---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred CC-chh---HHHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence 53 322 25788999999999999999999766 5665
No 124
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=93.56 E-value=0.056 Score=52.60 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred CcEEEEEeCCCCcH--------HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 84 PKKVLVPVGFGTEE--------MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~ill~~g~~~--------~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
...|+|+...+... .-.....+.|+++|+++.++..+.. . + .+.+. ...+|.||+|||
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-~-----------~-~i~~~-l~~~dglil~GG 95 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT-E-----------K-DYEIL-FKSINGILFPGG 95 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-H-----------H-HHHHH-HHHSSEEEECCC
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC-H-----------H-HHHHH-HhcCCEEEEeCC
Confidence 45899987543211 0112467889999999888765421 0 0 01110 126899999999
Q ss_pred cccccccc---CChHHHHHHHHHHhcC--CeEEEEchhhHHhhhc
Q 012037 156 MPGSVRLR---DCEILKKITSKQAEEK--RLYGAICAAPAVTLLP 195 (472)
Q Consensus 156 ~~~~~~l~---~~~~~~~~l~~~~~~~--k~I~aic~g~~~lLa~ 195 (472)
..+..... ....+.+++++..+.+ ++|.+||-|-+ +|+.
T Consensus 96 ~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Q-ll~~ 139 (315)
T 1l9x_A 96 SVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFE-ELSL 139 (315)
T ss_dssp CCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHH-HHHH
T ss_pred CcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHH-HHHH
Confidence 42332110 0134667777776664 99999999866 5654
No 125
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=93.15 E-value=0.33 Score=43.21 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=51.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccc-cCCCcccEEEEcCCCcchhcccc
Q 012037 289 RVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISD-AAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 289 ~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~-~~~~~~D~livpGG~~~~~~~~~ 367 (472)
||+|+=..+.. .....+.|++.|+++.++..+.. .+ .+.+ ....+.|.+|+.||.......
T Consensus 2 ~i~iiDn~~s~---~~~i~~~l~~~G~~~~v~~~~~~------------~~-~i~~~l~~~~~~~iil~gGpg~~~~~-- 63 (192)
T 1i1q_B 2 DILLLDNIDSF---TWNLADQLRTNGHNVVIYRNHIP------------AQ-TLIDRLATMKNPVLMLSPGPGVPSEA-- 63 (192)
T ss_dssp EEEEEECSCSS---HHHHHHHHHHTTCEEEEEETTSC------------SH-HHHHHHTTCSSEEEEECCCSSCGGGS--
T ss_pred cEEEEECCccH---HHHHHHHHHHCCCeEEEEECCCC------------HH-HHHHHhhhccCCeEEECCCCcCchhC--
Confidence 67777633332 23557788888998887654421 00 1111 111123447777776433321
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
....++++ ..+++++|.+||-|..+|+.+
T Consensus 64 -~~~~~l~~-~~~~~~PilGIC~G~Qll~~~ 92 (192)
T 1i1q_B 64 -GCMPELLT-RLRGKLPIIGICLGHQAIVEA 92 (192)
T ss_dssp -TTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred -chHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence 22233444 356789999999999999975
No 126
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=93.10 E-value=0.65 Score=49.51 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
..++|+|+=+.+- =...+.+.|++.|++++++..+. + .+ ...+|.|||+||.......
T Consensus 445 ~Gk~IlviD~gds---f~~~l~~~l~~~G~~v~Vv~~d~--~---------------~~--~~~~DgIIlsGGPg~p~d~ 502 (645)
T 3r75_A 445 SGCRALIVDAEDH---FTAMIAQQLSSLGLATEVCGVHD--A---------------VD--LARYDVVVMGPGPGDPSDA 502 (645)
T ss_dssp TTCEEEEEESSCT---HHHHHHHHHHHTTCEEEEEETTC--C---------------CC--GGGCSEEEECCCSSCTTCT
T ss_pred CCCEEEEEECCcc---HHHHHHHHHHHCCCEEEEEECCC--c---------------cc--ccCCCEEEECCCCCChhhh
Confidence 4578777643321 13457888899999998886552 1 01 1268999999985433322
Q ss_pred cCC---hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 163 RDC---EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 163 ~~~---~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
.+ ..+.++|++..+.+++|.+||-|-+ +|+.+
T Consensus 503 -~~p~i~~~~~lI~~a~~~~iPiLGIClG~Q-lLa~a 537 (645)
T 3r75_A 503 -GDPRIARLYAWLRHLIDEGKPFMAVCLSHQ-ILNAI 537 (645)
T ss_dssp -TSHHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred -hhhhHHHHHHHHHHHHHCCCCEEEECHHHH-HHHHH
Confidence 22 2467889998999999999999866 56654
No 127
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=92.03 E-value=0.49 Score=48.74 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhC----CCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRA----GAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~a----g~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
..+||++=----....+..+.++|..+ +.++++...+.. .++.. + .. ..+.. ..+|+|++|||.+.
T Consensus 293 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~-~l~~~-~--~~---~~~~L--~~~DgIIlpGG~G~- 362 (535)
T 3nva_A 293 TINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIEST-DLESD-T--KN---LNEIL--GNVNGIIVLPGFGS- 362 (535)
T ss_dssp EEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGG-GGCCS-S--SC---CTTTT--TSCSEEEECCCCSS-
T ss_pred eeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecch-hcccc-c--cc---hhhhc--cCCCEEEECCCCCC-
Confidence 356766532111234556677777755 456666655532 22211 1 00 01223 37999999999532
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhh
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLL 194 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa 194 (472)
. .....+++++.+.++++++.+||-|-+ +|+
T Consensus 363 ~---~~~g~i~~ir~a~~~~~PiLGIClG~Q-ll~ 393 (535)
T 3nva_A 363 R---GAEGKIKAIKYAREHNIPFLGICFGFQ-LSI 393 (535)
T ss_dssp T---THHHHHHHHHHHHHHTCCEEEETHHHH-HHH
T ss_pred c---cHHHHHHHHHHHHHcCCcEEEECcchh-HHH
Confidence 2 335678899999999999999999765 444
No 128
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=91.87 E-value=0.17 Score=52.70 Aligned_cols=88 Identities=17% Similarity=0.052 Sum_probs=57.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
++|+|+=|.+-.. ..+...|+.+|..++++..+. ..+++....+|.||++||....... .
T Consensus 8 ~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~----------------~~~~i~~~~~dgiILsGGp~s~~~~-~ 67 (525)
T 1gpm_A 8 HRILILDFGSQYT---QLVARRVRELGVYCELWAWDV----------------TEAQIRDFNPSGIILSGGPESTTEE-N 67 (525)
T ss_dssp SEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCC----------------CHHHHHHHCCSEEEECCCSSCTTST-T
T ss_pred CEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCC----------------CHHHHhccCCCEEEECCcCcccccc-C
Confidence 6799987765443 457788999998888775432 1233311246999999997432211 1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+.+ .+...+.+++|.+||-|..+|+.+
T Consensus 68 ~~~~---~~~~~~~g~PvLGIC~G~Qlla~~ 95 (525)
T 1gpm_A 68 SPRA---PQYVFEAGVPVFGVCYGMQTMAMQ 95 (525)
T ss_dssp CCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred Ccch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence 1111 133456799999999999999864
No 129
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=91.67 E-value=0.2 Score=46.93 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc--cc-------------ccCCh
Q 012037 102 IIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS--VR-------------LRDCE 166 (472)
Q Consensus 102 ~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~--~~-------------l~~~~ 166 (472)
..++.++++|..+.++..... . .+.+. ...+|.|+++||. +. .. ...|.
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~-~-------------~~~~~-l~~~DGlil~GG~-~v~P~~yg~~~~~~~~~~~~~rd~ 95 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDP-S-------------TAVQA-ISLVDGLLLTGGQ-DITPQLYLEEPSQEIGAYFPPRDS 95 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCG-G-------------GHHHH-HHTCSEEEECCCS-CCCGGGGTCCCCTTCCCCCHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCc-h-------------HHHHH-HhhCCEEEECCCC-CCChhhcCCccCcccCCcChhhhH
Confidence 467788888988887765421 0 01111 1259999999993 21 10 01123
Q ss_pred HHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 167 ILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 167 ~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+++|+++.+++++|.+||-|-+ +|+.+
T Consensus 96 ~~~~lir~a~~~~~PiLGIC~G~Q-ll~~a 124 (254)
T 3fij_A 96 YEIALVRAALDAGKPIFAICRGMQ-LVNVA 124 (254)
T ss_dssp HHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence 477999999999999999999755 67765
No 130
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=91.39 E-value=0.33 Score=50.61 Aligned_cols=89 Identities=13% Similarity=0.009 Sum_probs=53.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
..||+||=+.+-.. ..+...+++.|..++++..+.. .++.....+|+||+|||.....
T Consensus 10 ~~~I~IlD~g~~~~---~~i~r~lr~~Gv~~~i~p~~~~----------------~~~i~~~~~dgIILsGGp~sv~--- 67 (527)
T 3tqi_A 10 QHRILILDFGSQYA---QLIARRVREIGVYCELMPCDID----------------EETIRDFNPHGIILSGGPETVT--- 67 (527)
T ss_dssp CSEEEEEECSCTTH---HHHHHHHHHHTCEEEEEETTCC----------------SSSSTTTCCSEEEECCCCC------
T ss_pred CCeEEEEECCCccH---HHHHHHHHHCCCeEEEEECCCC----------------HHHHHhcCCCEEEECCcCcccc---
Confidence 46888886543222 3567888999998888754321 1122222579999999943221
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
+.......++.++.+++|.+||-|-+ +|+.+
T Consensus 68 -~~~~~~~~~~~~~~~~PvLGIC~G~Q-lla~~ 98 (527)
T 3tqi_A 68 -LSHTLRAPAFIFEIGCPVLGICYGMQ-TMAYQ 98 (527)
T ss_dssp -------CCCSTTTSSSCEEEETHHHH-HHHHH
T ss_pred -cCCChhhHHHHHhcCCCEEEEChHHH-HHHHH
Confidence 22233344566788999999999766 56643
No 131
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=90.04 E-value=0.39 Score=50.04 Aligned_cols=224 Identities=12% Similarity=0.017 Sum_probs=113.4
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHH-hcCC--eEEEEchhhHHhhhcCCCCCCceeecCcchhccCCC-Cc---
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQA-EEKR--LYGAICAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FW--- 218 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~-~~~k--~I~aic~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~--- 218 (472)
+||++|+=|| +.+.+ ..+-.+.+.++++. +.|+ .+.--.+ -.-.+..+|-++-|. |=|. .++|+. ..
T Consensus 133 ~~d~~i~e~~-gt~~d-i~~~~~~~~~~q~~~~~~~~~~~~~h~~-~~p~~~~~ge~ktkp-tq~s--v~~l~s~gi~pd 206 (545)
T 1s1m_A 133 GHDVVLVEIG-GTVGD-IESLPFLEAIRQMAVEIGREHTLFMHLT-LVPYMAASGEVKTKP-TQHS--VKELLSIGIQPD 206 (545)
T ss_dssp TCSEEEEEEC-SCTTS-STTHHHHHHHHHHHHHHCTTSEEEEEEE-ECCEETTTTEECCHH-HHHH--HHHHHTTTCCCS
T ss_pred cCCEEEEECC-CChhh-hhChHHHHHHHHHhHhhCcCcEEEEEEe-CcccccCCCCcCCCC-CcCC--HHHHhCCCCccC
Confidence 6999999776 33433 35566777777654 3332 2222222 233466777665432 3332 122222 10
Q ss_pred -------------ccc----CcEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhcccccc-CCcc-hhhhcccc
Q 012037 219 -------------AVK----SNIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNS-LKKEEFNE 279 (472)
Q Consensus 219 -------------~~~----~~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~-~~~~-~~~~~~n~ 279 (472)
|.. .-++...+++...+..+-.++-+.|=+ +...+.+.+.+.++. ..+. .+.+-.+.
T Consensus 207 ~lv~R~~~~~~~~~r~kisL~~~v~~~~Vi~~~dvdt~y~lp~~lr~----~G~~~~ii~~~~l~~~~~~l~~w~~lv~~ 282 (545)
T 1s1m_A 207 ILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKS----QGLDDYICKRFSLNCPEANLSEWEQVIFE 282 (545)
T ss_dssp EEEEEESSCCCHHHHHHHHHTTCCCSSCEEEEECCSCGGGHHHHHHH----TTHHHHHHHHTTCCCCCCCCHHHHHHHHH
T ss_pred EEEEeCCCCCCchhhccCChhhCccccCceecCCCChHHHHHHHHHH----cCChhhhhhhCCCCchhHHHHHHHHHHHh
Confidence 111 125566789998888766555554433 233333333343331 1111 12111111
Q ss_pred cccccCCCCEEEEEeCCCCCHH-HHHHHHHHHHhCCC----eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEE
Q 012037 280 VEWFFDRMPRVLIPIANGSEEI-EIVTIVDILRRAKV----DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII 354 (472)
Q Consensus 280 ~~~~~~~~~~V~il~~~g~~~~-e~~~~~d~l~~a~~----~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~li 354 (472)
+. ......+|++.-- ..... -...+.+.|..+++ ++.+.-.+.. .+.. + +.+ ...++|.||
T Consensus 283 v~-~~~~~v~i~~vGk-yv~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e-~i~~--------~--~~~-~l~~~DGIi 348 (545)
T 1s1m_A 283 EA-NPVSEVTIGMVGK-YIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQ-DVET--------R--GVE-ILKGLDAIL 348 (545)
T ss_dssp HH-CCSEEEEEEEEES-SCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHH-HHHH--------H--CTT-TTTTCSEEE
T ss_pred cc-CCCCeEEeCCcCC-eEEEEEHHHHHHHHHHHhCcccCCeEEEccCCHH-Hhhh--------h--hhh-hhhcCCEEE
Confidence 11 1112234554321 11111 23445666776664 3444433221 1110 0 111 125789999
Q ss_pred EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHH
Q 012037 355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHK 397 (472)
Q Consensus 355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~ 397 (472)
+|||++.. ..+..+++++.+.++++++.+||-|-.+|+.
T Consensus 349 lsGGpg~~----~~~g~~~~i~~a~~~~~PiLGIClG~Qll~v 387 (545)
T 1s1m_A 349 VPGGFGYR----GVEGMITTARFARENNIPYLGICLGMQVALI 387 (545)
T ss_dssp ECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred ECCCCCCc----cchhhHHHHHHHHHCCCcEEEECChHHHHHH
Confidence 99997432 2356778999988899999999999999884
No 132
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=89.45 E-value=0.54 Score=44.98 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=64.2
Q ss_pred CEEEEEeCCCCCHHH-HHHHHHHHHhCCC-eEEEEEecCCcceecCCCcEEeecC-CccccCCCcccEEEEcCCCcc-hh
Q 012037 288 PRVLIPIANGSEEIE-IVTIVDILRRAKV-DVVVASVERSTQIVASQGVKIIADK-SISDAAESVYDLIILPGGVAG-AE 363 (472)
Q Consensus 288 ~~V~il~~~g~~~~e-~~~~~d~l~~a~~-~v~~vs~~~~~~v~s~~G~~v~~d~-~l~~~~~~~~D~livpGG~~~-~~ 363 (472)
.||+++-+-.-..-+ .....+.|++.|+ +++++..... . . ..+. ..+.+ .+.|+|+|.||..- -.
T Consensus 57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-~-------a~~~~~~~~l--~~ad~I~v~GGnt~~l~ 125 (291)
T 3en0_A 57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-Q-------GDDSGYRLFV--EQCTGIFMTGGDQLRLC 125 (291)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-G-------GGCHHHHHHH--HHCSEEEECCSCHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-c-------cCCHHHHHHH--hcCCEEEECCCCHHHHH
Confidence 578888665443322 3345778888888 6776655331 0 0 0011 12223 56899999999621 11
Q ss_pred cccccHHHHHHHHHHHHcC-CeEEEEchhHHHHHH
Q 012037 364 RLQKSRILKKLLKEQKVAG-RIYGAVCSSPIVLHK 397 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g-~~v~aic~G~~lLA~ 397 (472)
.......+.+.|++.+++| .++++.|+|+.++..
T Consensus 126 ~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 126 GLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 2345668899999999999 899999999998753
No 133
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=89.37 E-value=0.38 Score=50.15 Aligned_cols=226 Identities=14% Similarity=0.048 Sum_probs=110.0
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHH-hcCC-eEEEE-chhhHHhhhcCCCCCCceeecCcchhccCCC-Ccccc
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQA-EEKR-LYGAI-CAAPAVTLLPWGLLRRKQITCHPAFTDKLPT-FWAVK 221 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~-~~~k-~I~ai-c~g~~~lLa~aGlL~g~~~T~~~~~~~~l~~-~~~~~ 221 (472)
+||++|+=|| +.+-+ ..+-.+.+.+|++. +.|+ -++-| .+ -.-.|..+|-++.|. |=|. ..+|+. ..+.+
T Consensus 144 ~~d~~i~e~~-gt~~d-i~~~~~~~~~rq~~~~~~~~~~~~~h~~-~~p~~~~~~e~ktkp-tq~s--v~~lrs~gi~pd 217 (550)
T 1vco_A 144 KAEIVVVEVG-GTVGD-IESLPFLEAIRQFRFDEGEGNTLYLHLT-LVPYLETSEEFKTKP-TQHS--VATLRGVGIQPD 217 (550)
T ss_dssp TCSEEEEEEC-SCTTS-STTHHHHHHHHTHHHHHCTTSEEEEEEE-ECCEETTTTEECCHH-HHHH--HHHHHHTTCCCS
T ss_pred CCCEEEEECC-CChhH-hhhHHHHHHHHHHhHhhCcCCEEEEEEe-CeecccCCCCcCCCC-cchh--HHHHhcCCCccC
Confidence 6899999765 33332 35667777777664 3232 22222 22 233466777776543 3332 112222 11111
Q ss_pred C--------------------cEEEeCCEEeCCCCCChHHHHHHHHHHHhCchhHHhhhhcccccc-CCcch-hhhcccc
Q 012037 222 S--------------------NIHVSGEVTTSRGPGTSFEFALCLVEQLFGESVAKEIGELLLMHN-ADNSL-KKEEFNE 279 (472)
Q Consensus 222 ~--------------------~~v~Dg~iiTa~g~~~~~dlal~li~~~~g~~~a~~va~~l~~~~-~~~~~-~~~~~n~ 279 (472)
- -++...+++...+..+-.++.+.|=++ ...+.+.+.+.++. ..+.. |. .+..
T Consensus 218 ~lvvR~~~~~~~~~r~k~sL~~~v~~~~Vi~~~dvdt~y~lp~~lr~~----G~~~~v~~~~~l~~~~~~l~~w~-~~~~ 292 (550)
T 1vco_A 218 ILVLRSARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQ----GLGRAVERALGLEAVIPNLSFWQ-EAVR 292 (550)
T ss_dssp EEEEEESSCCCHHHHHHHHHHHTCCGGGEEEEECCSCTTHHHHHHHHH----THHHHHHHHTTCCCCCCCCHHHH-HHHH
T ss_pred EEEEeCCCCCCcchhcccchhcCCCccCeeecCCCChHHHHHHHHHHc----CChhhhHhhCCCCchhHHHHHhH-HHHH
Confidence 1 134456788888877666565554332 22333333333321 11111 11 1111
Q ss_pred cccccCCCCEEEEEe-----CCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEE
Q 012037 280 VEWFFDRMPRVLIPI-----ANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLII 354 (472)
Q Consensus 280 ~~~~~~~~~~V~il~-----~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~li 354 (472)
.........+|+++- .|.+ ..=.-.+...+...|.++.+.-.+.. .+. ++ .+++. ..++|.||
T Consensus 293 ~~~~~~~~v~I~ivgkyv~l~D~y-~Sv~~aL~~~g~~~g~~v~I~~~d~~-~~~--------~~-~~~~~-L~~~DGII 360 (550)
T 1vco_A 293 VLKHPERTVKIAIAGKYVKMPDAY-LSLLEALRHAGIKNRARVEVKWVDAE-SLE--------AA-DLEEA-FRDVSGIL 360 (550)
T ss_dssp HHHSCSEEEEEEEEESCC---CTT-HHHHHHHHHHHHHTTEEEEEEEEEGG-GC----------C-CHHHH-TTTCSCEE
T ss_pred hhcCCCCceEEcccCCeEEEEecH-HHHHHHHHHHHHHcCCeEEEEEeCcc-ccc--------cc-hHHHH-HhcCCEEE
Confidence 100111223455331 2222 11111222333334556766533321 111 11 12121 15789999
Q ss_pred EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
+|||.+.. ..+..+++++.+.++++++.+||-|-.+|+.+
T Consensus 361 LpGGfGd~----~~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a 400 (550)
T 1vco_A 361 VPGGFGVR----GIEGKVRAAQYARERKIPYLGICLGLQIAVIE 400 (550)
T ss_dssp ECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred ECCCCCCc----chhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence 99997432 23456788998888999999999999988754
No 134
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=89.20 E-value=0.33 Score=46.45 Aligned_cols=101 Identities=10% Similarity=0.035 Sum_probs=63.9
Q ss_pred CcEEEEEeCCCCcHHH-HHHHHHHHHhCCC-EEEEEeeCCCcceeccCCceeeeCC-CcCCCCCCcccEEEEcCCcc-cc
Q 012037 84 PKKVLVPVGFGTEEME-AVIIVDVLRRAGA-QVTMASVEPQLEVEASSGTRLVADT-SISNCSHQVFDLIALPGGMP-GS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e-~~~~~~~l~~ag~-~v~~vs~~~g~~v~~~~G~~v~~d~-~~~~~~~~~~D~vivpGG~~-~~ 159 (472)
..||+|+-+-.-+..+ .....++|++.|+ .++++..... . .. .+. ..+.+ .+.|+|+|+||.. ..
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~-~a-------~~~~~~~~l--~~ad~I~v~GGnt~~l 124 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-A-QG-------DDSGYRLFV--EQCTGIFMTGGDQLRL 124 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-G-GG-------GCHHHHHHH--HHCSEEEECCSCHHHH
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-c-cc-------CCHHHHHHH--hcCCEEEECCCCHHHH
Confidence 3689998765444433 3456788888898 6776655321 0 00 000 01112 2589999999942 11
Q ss_pred ccccCChHHHHHHHHHHhcC-CeEEEEchhhHHhhhcC
Q 012037 160 VRLRDCEILKKITSKQAEEK-RLYGAICAAPAVTLLPW 196 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~-k~I~aic~g~~~lLa~a 196 (472)
.....+..+.+.|++.+++| .++++.|+| +.++...
T Consensus 125 ~~~l~~t~l~~~L~~~~~~G~~~~~GtSAG-A~i~~~~ 161 (291)
T 3en0_A 125 CGLLADTPLMDRIRQRVHNGEISLAGTSAG-AAVMGHH 161 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSSEEEEETHH-HHTTSSE
T ss_pred HHHHHhCCHHHHHHHHHHCCCeEEEEeCHH-HHhhhHh
Confidence 22445678899999999999 899999996 5456543
No 135
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=88.47 E-value=0.3 Score=50.95 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=54.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
.++|+|+=+.+-.. ..+...|+++|..++++..+.. . ..+.+. .+|+||+|||.......
T Consensus 7 ~~~IlIlD~g~~~~---~~i~r~lr~~G~~~~i~p~~~~-~------------~~i~~~---~~dgiILsGGp~s~~~~- 66 (525)
T 1gpm_A 7 KHRILILDFGSQYT---QLVARRVRELGVYCELWAWDVT-E------------AQIRDF---NPSGIILSGGPESTTEE- 66 (525)
T ss_dssp SSEEEEEECSCTTH---HHHHHHHHHTTCEEEEEESCCC-H------------HHHHHH---CCSEEEECCCSSCTTST-
T ss_pred CCEEEEEECCCccH---HHHHHHHHHCCCEEEEEECCCC-H------------HHHhcc---CCCEEEECCcCcccccc-
Confidence 46899886554322 4567889999999888764421 0 011111 36999999995333211
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
..+.+ .++.++.+++|.+||-|.+ +|+.
T Consensus 67 ~~~~~---~~~~~~~g~PvLGIC~G~Q-lla~ 94 (525)
T 1gpm_A 67 NSPRA---PQYVFEAGVPVFGVCYGMQ-TMAM 94 (525)
T ss_dssp TCCCC---CGGGGTSSSCEEEETHHHH-HHHH
T ss_pred CCcch---HHHHHHCCCCEEEEChHHH-HHHH
Confidence 11111 2445678999999999766 5665
No 136
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=86.96 E-value=1.4 Score=39.12 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=50.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCC
Q 012037 86 KVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDC 165 (472)
Q Consensus 86 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~ 165 (472)
||+|+=..+. . ...+.+.|++.|+++.++..+. +.. .+. ..+... ++|.+++.||...... .
T Consensus 2 ~i~iiDn~~s--~-~~~i~~~l~~~G~~~~v~~~~~--~~~-----~i~--~~l~~~---~~~~iil~gGpg~~~~---~ 63 (192)
T 1i1q_B 2 DILLLDNIDS--F-TWNLADQLRTNGHNVVIYRNHI--PAQ-----TLI--DRLATM---KNPVLMLSPGPGVPSE---A 63 (192)
T ss_dssp EEEEEECSCS--S-HHHHHHHHHHTTCEEEEEETTS--CSH-----HHH--HHHTTC---SSEEEEECCCSSCGGG---S
T ss_pred cEEEEECCcc--H-HHHHHHHHHHCCCeEEEEECCC--CHH-----HHH--HHhhhc---cCCeEEECCCCcCchh---C
Confidence 5666653222 1 2455888899999988876542 100 000 011111 2344666666333322 2
Q ss_pred hHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 166 EILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 166 ~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
....++++ ..+.+++|.+||-|-+ +|+.+
T Consensus 64 ~~~~~l~~-~~~~~~PilGIC~G~Q-ll~~~ 92 (192)
T 1i1q_B 64 GCMPELLT-RLRGKLPIIGICLGHQ-AIVEA 92 (192)
T ss_dssp TTHHHHHH-HHBTTBCEEEETHHHH-HHHHH
T ss_pred chHHHHHH-HHhcCCCEEEECcChH-HHHHH
Confidence 23334444 4678999999999766 67765
No 137
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=86.18 E-value=0.36 Score=52.01 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=54.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccc
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQK 367 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~ 367 (472)
.+|+|+=+.+-... .+...|+..|..+.++..+. ..+++...++|.||++||...... ..
T Consensus 30 ~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~----------------~~e~i~~~~~dGIILsGGp~s~~~-~~ 89 (697)
T 2vxo_A 30 GAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLET----------------PAFAIKEQGFRAIIISGGPNSVYA-ED 89 (697)
T ss_dssp CCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTC----------------CHHHHHHHTCSEEEEEECC--------
T ss_pred CEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCC----------------CHHHHhhcCCCEEEECCCCCcccC-cc
Confidence 57999877653332 25588899998888775442 223332246899999999743211 01
Q ss_pred cHHHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 368 SRILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 368 ~~~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+. +.+...+.+++|.+||-|..+|+.+
T Consensus 90 ~~~---~~~~i~~~g~PvLGIC~G~QlLa~~ 117 (697)
T 2vxo_A 90 APW---FDPAIFTIGKPVLGICYGMQMMNKV 117 (697)
T ss_dssp CCC---CCGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred chh---HHHHHHhCCCCEEEECHHHHHHHHH
Confidence 111 1123346789999999999999975
No 138
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=85.98 E-value=0.89 Score=47.03 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=53.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccH
Q 012037 290 VLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSR 369 (472)
Q Consensus 290 V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 369 (472)
|+|+=|.+-.. ..+...++++|..+.++..+. ..+++....+|.||++||....... ..+
T Consensus 2 i~ilD~g~~~~---~~i~r~l~~~G~~~~i~p~~~----------------~~~~i~~~~~dgiIlsGGp~s~~~~-~~~ 61 (503)
T 2ywb_A 2 VLVLDFGSQYT---RLIARRLRELRAFSLILPGDA----------------PLEEVLKHRPQALILSGGPRSVFDP-DAP 61 (503)
T ss_dssp EEEEESSCTTH---HHHHHHHHTTTCCEEEEETTC----------------CHHHHHTTCCSEEEECCCSSCSSCT-TCC
T ss_pred EEEEECCCcHH---HHHHHHHHHCCCEEEEEECCC----------------CHHHHHhcCCCEEEECCCCchhccC-CCc
Confidence 56665544333 567888999998887764432 1233321246999999997432210 111
Q ss_pred HHHHHHHHHHHcCCeEEEEchhHHHHHHc
Q 012037 370 ILKKLLKEQKVAGRIYGAVCSSPIVLHKH 398 (472)
Q Consensus 370 ~l~~~L~~~~~~g~~v~aic~G~~lLA~a 398 (472)
.+ .+...+.+.+|.+||-|..+|+.+
T Consensus 62 ~~---~~~~~~~~~PvLGIC~G~Qlla~~ 87 (503)
T 2ywb_A 62 RP---DPRLFSSGLPLLGICYGMQLLAQE 87 (503)
T ss_dssp CC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred ch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence 11 133446799999999999999975
No 139
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=85.21 E-value=1.6 Score=40.99 Aligned_cols=86 Identities=10% Similarity=-0.113 Sum_probs=55.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
..|+||+|+ .+.........+.+.|+..||+|+++..+.- +. +.++. .+||+||++.-. ...
T Consensus 2 ~~m~~vLiV-~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~~------------~~~~L--~~yDvIIl~d~~--~~~ 63 (259)
T 3rht_A 2 NAMTRVLYC-GDTSLETAAGYLAGLMTSWQWEFDYIPSHVG-LD------------VGELL--AKQDLVILSDYP--AER 63 (259)
T ss_dssp ----CEEEE-ESSCTTTTHHHHHHHHHHTTCCCEEECTTSC-BC------------SSHHH--HTCSEEEEESCC--GGG
T ss_pred CCCceEEEE-CCCCchhHHHHHHHHHHhCCceEEEeccccc-cc------------ChhHH--hcCCEEEEcCCc--ccc
Confidence 357888888 2223345667788899999999999887742 10 11223 379999997431 111
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
-++...+.|+++.++|.-++.+..
T Consensus 64 --l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 64 --MTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp --BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred --CCHHHHHHHHHHHHhCCeEEEecC
Confidence 246777788888888888887765
No 140
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=85.18 E-value=1.7 Score=40.74 Aligned_cols=85 Identities=19% Similarity=0.024 Sum_probs=56.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
.|+||+|+- ......+...+.+.|+..||+|+++..+.- + .+.+++ .+||+||++--. ...
T Consensus 3 ~m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~------------~~~~~L--~~yDvIIl~d~~--~~~- 63 (259)
T 3rht_A 3 AMTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L------------DVGELL--AKQDLVILSDYP--AER- 63 (259)
T ss_dssp ---CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B------------CSSHHH--HTCSEEEEESCC--GGG-
T ss_pred CCceEEEEC-CCCchhHHHHHHHHHHhCCceEEEeccccc-c------------cChhHH--hcCCEEEEcCCc--ccc-
Confidence 467898883 223345666788899999999998877642 0 023444 789999998422 222
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEch
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
-++.-++.|+++.++|.-++.+..
T Consensus 64 -l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 64 -MTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp -BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred -CCHHHHHHHHHHHHhCCeEEEecC
Confidence 356778888888888887777743
No 141
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=84.36 E-value=0.91 Score=47.25 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=35.4
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
.+|.|++|||.+.. ......++++++.++++++.+||-|-+ +|+.
T Consensus 343 ~~DGIilsGGpg~~----~~~g~~~~i~~a~~~~~PiLGIClG~Q-ll~v 387 (545)
T 1s1m_A 343 GLDAILVPGGFGYR----GVEGMITTARFARENNIPYLGICLGMQ-VALI 387 (545)
T ss_dssp TCSEEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred cCCEEEECCCCCCc----cchhhHHHHHHHHHCCCcEEEECChHH-HHHH
Confidence 69999999995332 225677899999889999999999766 5654
No 142
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=82.12 E-value=0.92 Score=47.25 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=34.7
Q ss_pred cccEEEEcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhc
Q 012037 146 VFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLP 195 (472)
Q Consensus 146 ~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~ 195 (472)
.+|.|++|||.+.. ..+..++.++++.++++|+.+||-|-+ +|+.
T Consensus 355 ~~DGIILpGGfGd~----~~~g~i~~ir~a~e~~iPiLGICLGmQ-lL~~ 399 (550)
T 1vco_A 355 DVSGILVPGGFGVR----GIEGKVRAAQYARERKIPYLGICLGLQ-IAVI 399 (550)
T ss_dssp TCSCEEECCCCSST----THHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred cCCEEEECCCCCCc----chhhhHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence 68999999995332 224567888988889999999999866 5554
No 143
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=76.44 E-value=2.1 Score=44.25 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCC
Q 012037 101 VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKR 180 (472)
Q Consensus 101 ~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k 180 (472)
..+...++++|..++++..+.. . ..+.+. .+|+||+|||....... ..+.+ .++.++.++
T Consensus 13 ~~i~r~l~~~G~~~~i~p~~~~-~------------~~i~~~---~~dgiIlsGGp~s~~~~-~~~~~---~~~~~~~~~ 72 (503)
T 2ywb_A 13 RLIARRLRELRAFSLILPGDAP-L------------EEVLKH---RPQALILSGGPRSVFDP-DAPRP---DPRLFSSGL 72 (503)
T ss_dssp HHHHHHHHTTTCCEEEEETTCC-H------------HHHHTT---CCSEEEECCCSSCSSCT-TCCCC---CGGGGCSSC
T ss_pred HHHHHHHHHCCCEEEEEECCCC-H------------HHHHhc---CCCEEEECCCCchhccC-CCcch---HHHHHhCCC
Confidence 5678889999988887754321 0 011122 47999999995332211 11111 234567899
Q ss_pred eEEEEchhhHHhhhcC
Q 012037 181 LYGAICAAPAVTLLPW 196 (472)
Q Consensus 181 ~I~aic~g~~~lLa~a 196 (472)
+|.+||-|-+ +|+.+
T Consensus 73 PvLGIC~G~Q-lla~~ 87 (503)
T 2ywb_A 73 PLLGICYGMQ-LLAQE 87 (503)
T ss_dssp CEEEETHHHH-HHHHT
T ss_pred CEEEECHHHH-HHHHH
Confidence 9999999766 56654
No 144
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=74.18 E-value=1.1 Score=48.35 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=51.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
..+|+||=+.+-... .+...|++.|..++++..+.. .++.....+|+||++||...... .
T Consensus 29 ~~~I~VLDfg~q~~~---liar~lre~Gv~~~ivp~~~~----------------~e~i~~~~~dGIILsGGp~s~~~-~ 88 (697)
T 2vxo_A 29 EGAVVILDAGAQYGK---VIDRRVRELFVQSEIFPLETP----------------AFAIKEQGFRAIIISGGPNSVYA-E 88 (697)
T ss_dssp CCCEEEEEEC--CHH---HHHHHHHHTTCCEEEEETTCC----------------HHHHHHHTCSEEEEEECC-------
T ss_pred CCEEEEEECCCchHH---HHHHHHHHCCCEEEEEECCCC----------------HHHHhhcCCCEEEECCCCCcccC-c
Confidence 457999866552222 245888999998888865521 01111125899999999532211 0
Q ss_pred CChHHHHHHHHHHhcCCeEEEEchhhHHhhhcC
Q 012037 164 DCEILKKITSKQAEEKRLYGAICAAPAVTLLPW 196 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~a 196 (472)
..+. +.++.++.+++|.+||-|.+ +|+.+
T Consensus 89 ~~~~---~~~~i~~~g~PvLGIC~G~Q-lLa~~ 117 (697)
T 2vxo_A 89 DAPW---FDPAIFTIGKPVLGICYGMQ-MMNKV 117 (697)
T ss_dssp -CCC---CCGGGTTSSCCEEEEEHHHH-HHHHH
T ss_pred cchh---HHHHHHhCCCCEEEECHHHH-HHHHH
Confidence 1111 12334578999999999766 66653
No 145
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=68.06 E-value=16 Score=38.60 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=63.3
Q ss_pred CcEEEEEeCCCCc----------------HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcc
Q 012037 84 PKKVLVPVGFGTE----------------EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVF 147 (472)
Q Consensus 84 ~~kV~ill~~g~~----------------~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~ 147 (472)
+.|||||=.-|-. ..+..+++++|..++++|++++-+. +... +. ..+|
T Consensus 438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdD---I~e~-----------e~--L~d~ 501 (759)
T 2zuv_A 438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDD---VLAH-----------GI--DSDI 501 (759)
T ss_dssp CSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHH---HHHH-----------CC--CTTC
T ss_pred CceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHH---hccc-----------cc--cccC
Confidence 4789999755322 1255789999999999999999873 2111 11 2379
Q ss_pred cEEEEcCCcc---ccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 148 DLIALPGGMP---GSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 148 D~vivpGG~~---~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
|+||-+|-.. .......++...+.||++..+|.-+++++.
T Consensus 502 DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGe 544 (759)
T 2zuv_A 502 DVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGE 544 (759)
T ss_dssp CEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCC
Confidence 9999988210 111234568999999999999999999988
No 146
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=66.81 E-value=13 Score=32.44 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=52.5
Q ss_pred CCEEEEEeCCCCC--HHHHHHHHHHHHhCCCeEEEEEecCCc-cee-cCCCc--EEeecCCccccCCCcccEEEEcCCCc
Q 012037 287 MPRVLIPIANGSE--EIEIVTIVDILRRAKVDVVVASVERST-QIV-ASQGV--KIIADKSISDAAESVYDLIILPGGVA 360 (472)
Q Consensus 287 ~~~V~il~~~g~~--~~e~~~~~d~l~~a~~~v~~vs~~~~~-~v~-s~~G~--~v~~d~~l~~~~~~~~D~livpGG~~ 360 (472)
|+||+|+.+.... ..=.-.+.+.+...+.+++++...... +.. +.... ...+....+++ .++|.||+..-
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP-- 80 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDL--KNCAGLALGSP-- 80 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHH--HTCSEEEEEEE--
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHH--HHCCEEEEEcC--
Confidence 5689888876432 222334567777788999888775410 000 00000 00111123334 57899988542
Q ss_pred chhcccccHHHHHHHHHHHH-------cCCeEEEEchh
Q 012037 361 GAERLQKSRILKKLLKEQKV-------AGRIYGAVCSS 391 (472)
Q Consensus 361 ~~~~~~~~~~l~~~L~~~~~-------~g~~v~aic~G 391 (472)
.....-...+..||.+... ++|.++.++++
T Consensus 81 -~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~ 117 (200)
T 2a5l_A 81 -TRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTST 117 (200)
T ss_dssp -CBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEB
T ss_pred -hhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEec
Confidence 1112235566677766432 67777777664
No 147
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=66.54 E-value=9.7 Score=33.18 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHh-CCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANGSEEIE--IVTIVDILRR-AKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e--~~~~~d~l~~-a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
.|+||+|+.+....-.+ .-.+.+.+.. .+.+++++..... ..+++ .++|.||+..-.
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~---------------~~~~l--~~aD~ii~gsP~--- 62 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA---------------TKEDV--LWADGLAVGSPT--- 62 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC---------------CHHHH--HHCSEEEEEEEC---
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC---------------CHHHH--HhCCEEEEEeCc---
Confidence 46789888776433332 2345666776 7888888776542 13444 578998885421
Q ss_pred hcccccHHHHHHHHHHHH------cCCeEEEEch
Q 012037 363 ERLQKSRILKKLLKEQKV------AGRIYGAVCS 390 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~------~g~~v~aic~ 390 (472)
....-...+..||.+... +++.++.+++
T Consensus 63 y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 63 NMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSS 96 (188)
T ss_dssp BTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEE
T ss_pred cCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEE
Confidence 222345677788887654 6788777776
No 148
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=65.70 E-value=11 Score=32.93 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=53.1
Q ss_pred CcEEEEEeCCCCc--HHHHHHHHHHHHh-CCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGFGTE--EMEAVIIVDVLRR-AGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g~~--~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
|+||.|+.....- ..=.-.+.+.+.. .|.+++++....- . ..++. ++|+|++..- ..
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~-~--------------~~~l~--~aD~ii~gsP---~y 63 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA-T--------------KEDVL--WADGLAVGSP---TN 63 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC-C--------------HHHHH--HCSEEEEEEE---CB
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC-C--------------HHHHH--hCCEEEEEeC---cc
Confidence 6789888866332 2223345666676 7888888876532 1 12222 6899998331 12
Q ss_pred cccCChHHHHHHHHHHh------cCCeEEEEchh
Q 012037 161 RLRDCEILKKITSKQAE------EKRLYGAICAA 188 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~------~~k~I~aic~g 188 (472)
.-.-.+.+..|+.+... ++|+++.++++
T Consensus 64 ~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~ 97 (188)
T 2ark_A 64 MGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSS 97 (188)
T ss_dssp TTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEE
T ss_pred CCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEEC
Confidence 22234678889988765 68888888773
No 149
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=60.01 E-value=6.5 Score=32.66 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=48.9
Q ss_pred CCEEEEEeCCCCCHH--HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCC-cccEEEEcCCCcchh
Q 012037 287 MPRVLIPIANGSEEI--EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAES-VYDLIILPGGVAGAE 363 (472)
Q Consensus 287 ~~~V~il~~~g~~~~--e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~-~~D~livpGG~~~~~ 363 (472)
|+||+|+-+...--. =.-.+.+.+...|++++++....- ...++ . ++|.+++.....+..
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~~d~ii~g~pty~~~ 63 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA---------------SAENL--ADGYDAVLFGCSAWGME 63 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB---------------CCTTT--TTTCSEEEEEECEECSS
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC---------------CHhHh--cccCCEEEEEecccCCC
Confidence 467887766543322 233356677778888888766542 12333 4 789888754321110
Q ss_pred cccccHHHHHHHHHHH---HcCCeEEEEchh
Q 012037 364 RLQKSRILKKLLKEQK---VAGRIYGAVCSS 391 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~---~~g~~v~aic~G 391 (472)
.=.-.+.+.+++++.. -+++.++.+++|
T Consensus 64 ~G~~p~~~~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 64 DLEMQDDFLSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp SCEECHHHHHHHTTGGGTCCTTCEEEEEEEE
T ss_pred CCCCcHHHHHHHHHhhccCCCCCEEEEEEeC
Confidence 0012345666666543 357888777765
No 150
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=59.28 E-value=94 Score=29.44 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=63.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec----------cCCceeeeCCCcCCCCCCcccEEE--
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA----------SSGTRLVADTSISNCSHQVFDLIA-- 151 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~----------~~G~~v~~d~~~~~~~~~~~D~vi-- 151 (472)
.++|.||+.+|-+.-+-....-.|...|++|+++-+... .... ..|..+.... .......+|+||
T Consensus 132 ~~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~--~~l~~~~~dlIIDA 208 (306)
T 3d3j_A 132 RPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFV-KMLESITNELSLFSKTQGQQVSSL--KDLPTSPVDLVINC 208 (306)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCCCS-SCCHHHHHHHHHHHTSSCEEESCS--TTSCSSCCSEEEEE
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEecCC-CCCHHHHHHHHHHHHcCCccccch--hhhccCCCCEEEEC
Confidence 358999999999999999999999999999999865431 1110 1233333211 111102356555
Q ss_pred EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
| |. +....+...+.+.++|+...+.+.+|.||-- |+
T Consensus 209 L-G~-G~~~~l~~~~~~~~lI~~iN~~~~~VvAVDi-PS 244 (306)
T 3d3j_A 209 L-DC-PENVFLRDQPWYKAAVAWANQNRAPVLSIDP-PV 244 (306)
T ss_dssp C-CC-TTCGGGGGCHHHHHHHHHHHHSCCCEEEESC-CC
T ss_pred C-CC-CCCCccCcchHHHHHHHHHHhcCCCEEEEEC-CC
Confidence 3 32 2222232236777778777778899999876 55
No 151
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=57.64 E-value=89 Score=28.78 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=62.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec----------cCCceeeeCCCcCCCCCCcccEEE--
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA----------SSGTRLVADTSISNCSHQVFDLIA-- 151 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~----------~~G~~v~~d~~~~~~~~~~~D~vi-- 151 (472)
.++|.||+.+|-+.-+-....-.|...|++|+++-.... .... ..|..+.... .......+|+||
T Consensus 85 ~~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~--~~l~~~~~dlIVDA 161 (259)
T 3d3k_A 85 RPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFV-KMLESITNELSLFSKTQGQQVSSL--KDLPTSPVDLVINC 161 (259)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCBCS-SCCHHHHHHHHHHTTSSCEEESCG--GGSCSSCCSEEEEE
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEecCC-CCCHHHHHHHHHHHHcCCCcccch--hhhccCCCCEEEEC
Confidence 458999999999999999999999999999999865421 1110 1233333211 111101355554
Q ss_pred EcCCccccccccCChHHHHHHHHHHhcCCeEEEEchhhH
Q 012037 152 LPGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICAAPA 190 (472)
Q Consensus 152 vpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~ 190 (472)
+ |. +....+.+.+.+.++|+...+.+.++.|+-- |+
T Consensus 162 L-G~-G~~~~l~~~~~~~~lI~~iN~~~~~vvAVDi-PS 197 (259)
T 3d3k_A 162 L-DC-PENVFLRDQPWYKAAVAWANQNRAPVLSIDP-PV 197 (259)
T ss_dssp C-CC-TTCTTGGGSHHHHHHHHHHHHHCSCEEEESC-CC
T ss_pred C-CC-CCCCccCcchHHHHHHHHHHhCCCCEEEEEC-CC
Confidence 3 32 2222232235677777777777889999876 55
No 152
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=56.83 E-value=32 Score=29.22 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCC----cceecCCCcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERS----TQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~----~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
...+|.++-.+|++.-=.-......|. .+..++-...- .-.....|+.+..... .+.|+|++-||..-
T Consensus 25 ~~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~------~~~D~vVllGGLAM 96 (157)
T 2r47_A 25 DAERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISP------GNVDVLVLLGGLSM 96 (157)
T ss_dssp TCSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECC------CCEEEEEEEGGGGS
T ss_pred CCCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccC------CCCCEEEEeccccC
Confidence 367999999999987554445555555 34444432210 0123345777655422 36899999999754
Q ss_pred hhcccccHHHHHHHHHHHHcCCeEEEEchhHHHHHHcC
Q 012037 362 AERLQKSRILKKLLKEQKVAGRIYGAVCSSPIVLHKHG 399 (472)
Q Consensus 362 ~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~lLA~aG 399 (472)
+..-...+++.++|.+..+.++.|.+||-=. ++.++|
T Consensus 97 Pk~~v~~e~v~~li~ki~~~~~kiiGvCFms-~F~kag 133 (157)
T 2r47_A 97 PGIGSDIEDVKKLVEDALEEGGELMGLCYMD-MFARAG 133 (157)
T ss_dssp TTTSCCHHHHHHHHHHHEEEEEEEEEEEETT-HHHHTT
T ss_pred CCCCCCHHHHHHHHHHhhcCCCCEEEEEhHH-HHHHcC
Confidence 4444556788889998866666799999755 455555
No 153
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=56.69 E-value=19 Score=31.30 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=53.7
Q ss_pred CcEEEEEeCCC--CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceecc-CCcee----eeCCCcCCCCCCcccEEEEcCCc
Q 012037 84 PKKVLVPVGFG--TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEAS-SGTRL----VADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 84 ~~kV~ill~~g--~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~-~G~~v----~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
|+||.|+.... ....=...+.+.+...|++++++..... ...+. ..... .+....+++ .++|+||+..-
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP- 80 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDL--KNCAGLALGSP- 80 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHH--HTCSEEEEEEE-
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHH--HHCCEEEEEcC-
Confidence 57898888763 2233333456667778999998877641 11000 00000 011112222 36899998321
Q ss_pred cccccccCChHHHHHHHHHHh-------cCCeEEEEchhh
Q 012037 157 PGSVRLRDCEILKKITSKQAE-------EKRLYGAICAAP 189 (472)
Q Consensus 157 ~~~~~l~~~~~~~~~l~~~~~-------~~k~I~aic~g~ 189 (472)
.....-.+.+..||.+... ++|+++.+++++
T Consensus 81 --~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 118 (200)
T 2a5l_A 81 --TRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTA 118 (200)
T ss_dssp --CBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBS
T ss_pred --hhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecC
Confidence 1222234677778876543 678888877754
No 154
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=54.58 E-value=28 Score=33.05 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCCEEEEEeCCCCC--HHHHHHHHHHHHhCCCeEEEEEecCCccee--c-------CCCcEEeecCCccccCCCcccEEE
Q 012037 286 RMPRVLIPIANGSE--EIEIVTIVDILRRAKVDVVVASVERSTQIV--A-------SQGVKIIADKSISDAAESVYDLII 354 (472)
Q Consensus 286 ~~~~V~il~~~g~~--~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~--s-------~~G~~v~~d~~l~~~~~~~~D~li 354 (472)
+|+||+|+.=++-. ..-+..+.+.|+..|+++.+...... ... . ..|..+.. ..-.+....++|++|
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~d~vi 80 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAV-DRGSLHLAPDDMRAMGVEIEV-VDADQHAADGCELVL 80 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-------------------------------------CCCEE
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhhcccccccccccccccccc-cccccccccCCCEEE
Confidence 36789888776442 22356778888999998876544432 110 0 00101110 000111225789999
Q ss_pred EcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 355 LPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 355 vpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
+.||.+ -++...+.+...+.++.+|-.|.
T Consensus 81 ~~GGDG---------T~l~a~~~~~~~~~pvlgi~~G~ 109 (307)
T 1u0t_A 81 VLGGDG---------TFLRAAELARNASIPVLGVNLGR 109 (307)
T ss_dssp EEECHH---------HHHHHHHHHHHHTCCEEEEECSS
T ss_pred EEeCCH---------HHHHHHHHhccCCCCEEEEeCCC
Confidence 999852 34555566655678888887764
No 155
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=54.47 E-value=53 Score=26.51 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALP 153 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivp 153 (472)
.+++|+|+=...-...--..++.-|.+.||++.-|.++.+ .+ .|. .+-.++.+++. .|.++|.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~-~i---~G~--~~y~sl~dlp~--vDlavi~ 65 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKG-EV---LGK--TIINERPVIEG--VDTVTLY 65 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCS-EE---TTE--ECBCSCCCCTT--CCEEEEC
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCC-cC---CCe--eccCChHHCCC--CCEEEEE
Confidence 4678999854432222234566777788999999988864 44 343 34446677763 8888873
No 156
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=53.01 E-value=25 Score=30.97 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCcEEEEEeCCC--CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceec---cCCce-----ee---eCCCcCCCCCCcccE
Q 012037 83 PPKKVLVPVGFG--TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEA---SSGTR-----LV---ADTSISNCSHQVFDL 149 (472)
Q Consensus 83 ~~~kV~ill~~g--~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~---~~G~~-----v~---~d~~~~~~~~~~~D~ 149 (472)
.|+||.|+.+.. ....=...+.+.+.+.|.+++++....- .-.+ ..+.. .. +....+++ ..+|+
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET-APQDVIDGQDAWKANIEAMKDVPEATPADL--EWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC-SCHHHHTTCHHHHHHHHHTTTSCBCCHHHH--HHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc-ccchhhhcccccccccccccchhHHHHHHH--HHCCE
Confidence 367899888753 3333344466677778999999887641 0000 00000 00 01112222 36899
Q ss_pred EEEcCCccccccccCChHHHHHHHHHH-------hcCCeEEEEchhh
Q 012037 150 IALPGGMPGSVRLRDCEILKKITSKQA-------EEKRLYGAICAAP 189 (472)
Q Consensus 150 vivpGG~~~~~~l~~~~~~~~~l~~~~-------~~~k~I~aic~g~ 189 (472)
||+.. ......-.+.+..||.+.. -.+|+++.+++++
T Consensus 82 ii~gs---P~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 125 (211)
T 1ydg_A 82 IVFSS---PTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 125 (211)
T ss_dssp EEEEE---EEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEES
T ss_pred EEEEc---CccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCC
Confidence 99832 1222223466778887653 2567777776644
No 157
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=52.70 E-value=26 Score=32.32 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCe
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRI 384 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 384 (472)
.+.+.|...+|+|++.+.+.- +..+++....+||+||.-|-..+ . .-+++..+-|+++.++|.-
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~-------------~~~~~~~~L~~~DvvV~~~~~~~-~--~l~~~~~~al~~~V~~GgG 99 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEP-------------EHGLTDEVLDRCDVLVWWGHIAH-D--EVKDEVVERVHRRVLEGMG 99 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSG-------------GGGCCHHHHHTCSEEEEECSSCG-G--GSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhCCcEEEEEeccCc-------------cccCCHhHHhcCCEEEEecCCCC-C--cCCHHHHHHHHHHHHcCCC
Confidence 347889999999998774331 00122112268999998542111 1 1356777888889999999
Q ss_pred EEEEchhH
Q 012037 385 YGAVCSSP 392 (472)
Q Consensus 385 v~aic~G~ 392 (472)
++++-+|.
T Consensus 100 ~vgiH~a~ 107 (252)
T 1t0b_A 100 LIVLHSGH 107 (252)
T ss_dssp EEEEGGGG
T ss_pred EEEEcccC
Confidence 99998774
No 158
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=52.21 E-value=31 Score=30.29 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHhCCCeEEEEEecCCc-cee-cCCCcE---------EeecCCccccCCCcccE
Q 012037 286 RMPRVLIPIANG--SEEIEIVTIVDILRRAKVDVVVASVERST-QIV-ASQGVK---------IIADKSISDAAESVYDL 352 (472)
Q Consensus 286 ~~~~V~il~~~g--~~~~e~~~~~d~l~~a~~~v~~vs~~~~~-~v~-s~~G~~---------v~~d~~l~~~~~~~~D~ 352 (472)
.|+||+|+.+.. ....=.-.+.+.+...|.+++++...... ... +..+.. + +....+++ .++|.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~l--~~aD~ 81 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDV-PEATPADL--EWAEA 81 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTS-CBCCHHHH--HHCSE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccch-hHHHHHHH--HHCCE
Confidence 567999988764 33333344567777788999888775420 000 000000 0 11223344 67898
Q ss_pred EEEcCCCcchhcccccHHHHHHHHHHH-------HcCCeEEEEchh
Q 012037 353 IILPGGVAGAERLQKSRILKKLLKEQK-------VAGRIYGAVCSS 391 (472)
Q Consensus 353 livpGG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 391 (472)
||+..- .....-...+..||.+.. -++|.++.++++
T Consensus 82 ii~gsP---~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~ 124 (211)
T 1ydg_A 82 IVFSSP---TRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSA 124 (211)
T ss_dssp EEEEEE---EETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEE
T ss_pred EEEEcC---ccccCccHHHHHHHHHhccccccccCCCCEEEEEEeC
Confidence 888531 222223456777776643 245666555543
No 159
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=51.77 E-value=29 Score=36.68 Aligned_cols=74 Identities=20% Similarity=0.200 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCc---chhcccccHHHHHHHHHH
Q 012037 302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA---GAERLQKSRILKKLLKEQ 378 (472)
Q Consensus 302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~---~~~~~~~~~~l~~~L~~~ 378 (472)
...++++.|..++++|++++.+.= ... +. .++||+||-+|-.. .......++...+.||++
T Consensus 469 sy~GilEALsg~~~dV~FIsfdDI---~e~-----------e~--L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~f 532 (759)
T 2zuv_A 469 SYYGILESLSGMRVNVRFISFDDV---LAH-----------GI--DSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAW 532 (759)
T ss_dssp HHHHHHHHHHTSSSEEEEEEHHHH---HHH-----------CC--CTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCceEEecHHHh---ccc-----------cc--cccCCEEEecCcchhcccCccccCCHHHHHHHHHH
Confidence 457899999999999999988741 100 12 27899999988221 111223568999999999
Q ss_pred HHcCCeEEEEchh
Q 012037 379 KVAGRIYGAVCSS 391 (472)
Q Consensus 379 ~~~g~~v~aic~G 391 (472)
..+|.-+++++.=
T Consensus 533 V~~GGgLIgVGep 545 (759)
T 2zuv_A 533 VRGGGAFVGVGEP 545 (759)
T ss_dssp HHTTCEEEEEEST
T ss_pred HHcCCcEEEeCCc
Confidence 9999888887743
No 160
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=50.75 E-value=39 Score=29.13 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=52.7
Q ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHh-CCCeEEEEEecCCcc--eecCCCcEE--eecCCccccCCCcccEEEEcCCC
Q 012037 287 MPRVLIPIANGS--EEIEIVTIVDILRR-AKVDVVVASVERSTQ--IVASQGVKI--IADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 287 ~~~V~il~~~g~--~~~e~~~~~d~l~~-a~~~v~~vs~~~~~~--v~s~~G~~v--~~d~~l~~~~~~~~D~livpGG~ 359 (472)
|+||+|+.+... ...=.-.+.+.+.. .|.+++++......+ +....+... .+....+++ .++|.||+..-
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP- 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQEL--ADYDAIIFGTP- 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGG--GGCSEEEEEEE-
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHH--HHCCEEEEEeC-
Confidence 468888877633 23333445677777 788999888764200 000011100 011113444 67999888541
Q ss_pred cchhcccccHHHHHHHHHHH-------HcCCeEEEEchhH
Q 012037 360 AGAERLQKSRILKKLLKEQK-------VAGRIYGAVCSSP 392 (472)
Q Consensus 360 ~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G~ 392 (472)
.....-...+..||.+.. -++|+++.++++.
T Consensus 78 --~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 115 (198)
T 3b6i_A 78 --TRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG 115 (198)
T ss_dssp --EETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEES
T ss_pred --hhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCC
Confidence 122223455666666542 3677777766653
No 161
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=49.13 E-value=45 Score=28.69 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=53.6
Q ss_pred CcEEEEEeCC--CCcHHHHHHHHHHHHh-CCCEEEEEeeCCCccee---ccCCcee--eeCCCcCCCCCCcccEEEEcCC
Q 012037 84 PKKVLVPVGF--GTEEMEAVIIVDVLRR-AGAQVTMASVEPQLEVE---ASSGTRL--VADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 84 ~~kV~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~g~~v~---~~~G~~v--~~d~~~~~~~~~~~D~vivpGG 155 (472)
|+||.|+.+. |....=...+.+.+++ .|.+++++....- ... +..+... .+....+++ ..+|+||+..-
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP 77 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPET-MPPQLFEKAGGKTQTAPVATPQEL--ADYDAIIFGTP 77 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCC-SCHHHHHHTTCCCCCSCBCCGGGG--GGCSEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcccc-CchhhhhhcccccccCchhhHHHH--HHCCEEEEEeC
Confidence 4688888765 3333333446667777 7999999887641 100 0011100 011112333 37999998321
Q ss_pred ccccccccCChHHHHHHHHHH-------hcCCeEEEEchhh
Q 012037 156 MPGSVRLRDCEILKKITSKQA-------EEKRLYGAICAAP 189 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~-------~~~k~I~aic~g~ 189 (472)
.....-.+.+..||.+.. -++|+++.+++++
T Consensus 78 ---~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 115 (198)
T 3b6i_A 78 ---TRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG 115 (198)
T ss_dssp ---EETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEES
T ss_pred ---hhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCC
Confidence 122223466777776653 3678888877754
No 162
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=48.65 E-value=22 Score=32.10 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC
Q 012037 298 SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG 357 (472)
Q Consensus 298 ~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG 357 (472)
....|...+.+++...|.+|+++|...+ .. ..+++++++.+||-++|..
T Consensus 18 ~p~setiyl~~~~~~mgl~vd~is~k~~-iy----------~~~fd~vd~n~ydr~~vvn 66 (351)
T 1jg7_A 18 VPSSETIYLFKVISEMGLNVDIISLKNG-VY----------TKSFDEVDVNDYDRLIVVN 66 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESSCC-SS----------EEEGGGSCGGGCSEEEEEC
T ss_pred cCccceeeHHHHHHHcCCCeeEEEeccc-ee----------eeecccCCccccceEEEEe
Confidence 3467899999999999999999999875 11 1368888889999998874
No 163
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=48.44 E-value=8.4 Score=32.77 Aligned_cols=106 Identities=16% Similarity=0.074 Sum_probs=67.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCc----ceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQL----EVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~----~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
..||.+.=.+|+...=+-.+..+.|. -+..++....-+ -.....|.++.-... .+.|+|++-||..-+
T Consensus 26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~------~~~D~vVllGGLAMP 97 (157)
T 2r47_A 26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISP------GNVDVLVLLGGLSMP 97 (157)
T ss_dssp CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECC------CCEEEEEEEGGGGST
T ss_pred CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccC------CCCCEEEEeccccCC
Confidence 57899999999875533334444444 455555543210 122345666544321 269999999996433
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCCC
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGLL 199 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGlL 199 (472)
..-..-+++.+.|.+..+..+.|.++|- -. +..++|..
T Consensus 98 k~~v~~e~v~~li~ki~~~~~kiiGvCF-ms-~F~kagW~ 135 (157)
T 2r47_A 98 GIGSDIEDVKKLVEDALEEGGELMGLCY-MD-MFARAGWY 135 (157)
T ss_dssp TTSCCHHHHHHHHHHHEEEEEEEEEEEE-TT-HHHHTTHH
T ss_pred CCCCCHHHHHHHHHHhhcCCCCEEEEEh-HH-HHHHcCCC
Confidence 3333446788889888777788999998 45 67888743
No 164
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=48.01 E-value=1.7e+02 Score=27.22 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCCCCHHHH--HHHHHHHHhCC-CeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANGSEEIEI--VTIVDILRRAK-VDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~--~~~~d~l~~a~-~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
+..||+|+.-...-..+. ..+.++|...+ |+|++...... ..... .|.+ ...+||+||+-- ..
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~--~~d~~--------~f~~-~L~~~D~vV~~~-~~-- 68 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQ--GKDMS--------GFVL-DFSPYQLVVLDY-NG-- 68 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCT--TSCCT--------TCCC-CCTTCSEEEECC-CS--
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCcc--ccchh--------HHhh-hhhcCCEEEEeC-CC--
Confidence 346788885543333333 46677777777 99988754321 00011 1211 236799999633 21
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
. .-+++..+-|+++.++|.-++++.++.
T Consensus 69 ~--~l~~~~~~~l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 69 D--SWPEETNRRFLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp S--CCCHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred C--cCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 1 125667778888888999999998864
No 165
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=47.91 E-value=82 Score=25.68 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCEEEEEeCC--CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch-h
Q 012037 287 MPRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA-E 363 (472)
Q Consensus 287 ~~~V~il~~~--g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~-~ 363 (472)
|++|.|+-+. |....=.-.+.+.|...+++++++.. ....++ .++|.+++.....+. .
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~-----------------~~~~~l--~~~d~vi~g~pt~g~g~ 61 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHG-----------------PLLEDL--PASGIWLVISSTHGAGD 61 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECC-----------------TTSCSS--CSEEEEEEECCTTTTCC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecC-----------------CCHHHc--ccCCeEEEEECccCCCC
Confidence 3567666553 55555455667778777888776521 012334 578988886533211 1
Q ss_pred cccccHHHHHHHHHH--HHcCCeEEEEchhHH
Q 012037 364 RLQKSRILKKLLKEQ--KVAGRIYGAVCSSPI 393 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~--~~~g~~v~aic~G~~ 393 (472)
....-..++++|+.. .-+++.++..+.|-.
T Consensus 62 ~p~~~~~f~~~l~~~~~~l~~~~~avfg~G~~ 93 (147)
T 2hna_A 62 IPDNLSPFYEALQEQKPDLSAVRFGAIGIGSR 93 (147)
T ss_dssp TTSSCHHHHHHHHHHCCCTTEEEEEEESCCHH
T ss_pred CChhHHHHHHHHHhhccccCCCEEEEEecccC
Confidence 112234566666653 234667777776643
No 166
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=46.59 E-value=17 Score=34.07 Aligned_cols=89 Identities=13% Similarity=-0.021 Sum_probs=51.6
Q ss_pred CcEEEEEeCCCCc--HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~~--~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+||+|+..++-. ...+..+.+.|++.|+++.+...... .. ...+..... .+. ....+|+||+.||
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~-~~~~~~~~~---~~~-~~~~~D~vi~~GG------ 72 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAH-EL-QLKNVPTGT---LAE-IGQQADLAVVVGG------ 72 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHH-HT-TCSSCCEEC---HHH-HHHHCSEEEECSC------
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-ccccccccc---hhh-cccCCCEEEEEcC------
Confidence 6899999876521 22355678888899998876543211 10 000111000 001 1135899999999
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
|..+.+-++.....+.++.+|-.
T Consensus 73 ---DGT~l~a~~~~~~~~~P~lGI~~ 95 (292)
T 2an1_A 73 ---DGNMLGAARTLARYDINVIGINR 95 (292)
T ss_dssp ---HHHHHHHHHHHTTSSCEEEEBCS
T ss_pred ---cHHHHHHHHHhhcCCCCEEEEEC
Confidence 35667777777777889888854
No 167
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=46.55 E-value=25 Score=32.98 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=47.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccC
Q 012037 85 KKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRD 164 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~ 164 (472)
+||+|+.-++-. ...+.+.|++.|+++.+...... . . .+.|++|+-||.
T Consensus 30 mki~iv~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~-~-----------------~--~~~DlvIvlGGD-------- 78 (278)
T 1z0s_A 30 MRAAVVYKTDGH---VKRIEEALKRLEVEVELFNQPSE-E-----------------L--ENFDFIVSVGGD-------- 78 (278)
T ss_dssp CEEEEEESSSTT---HHHHHHHHHHTTCEEEEESSCCG-G-----------------G--GGSSEEEEEECH--------
T ss_pred eEEEEEeCCcHH---HHHHHHHHHHCCCEEEEcccccc-c-----------------c--CCCCEEEEECCC--------
Confidence 579988876654 66778889999998866432211 0 0 158999999982
Q ss_pred ChHHHHHHHHHHhcCCeEEEEchh
Q 012037 165 CEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 165 ~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
..++.-.+..... .+|.+|-.|
T Consensus 79 -GT~L~aa~~~~~~-~PilGIN~G 100 (278)
T 1z0s_A 79 -GTILRILQKLKRC-PPIFGINTG 100 (278)
T ss_dssp -HHHHHHHTTCSSC-CCEEEEECS
T ss_pred -HHHHHHHHHhCCC-CcEEEECCC
Confidence 4444445544444 889998774
No 168
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=46.08 E-value=1.9e+02 Score=26.91 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=53.4
Q ss_pred CCcEEEEEeCCCCc--HHHHHHHHHHHHhCC-CEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 83 PPKKVLVPVGFGTE--EMEAVIIVDVLRRAG-AQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 83 ~~~kV~ill~~g~~--~~e~~~~~~~l~~ag-~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
++.||+|+...... ......+.+.|++.| |+|++...... . .... .|.. ...+||+||+--. .
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~-~-~d~~--------~f~~-~L~~~D~vV~~~~---~ 68 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQ-G-KDMS--------GFVL-DFSPYQLVVLDYN---G 68 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCT-T-SCCT--------TCCC-CCTTCSEEEECCC---S
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCcc-c-cchh--------HHhh-hhhcCCEEEEeCC---C
Confidence 45788888654322 222345667777777 99998864321 0 0001 1211 2337999996321 1
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEchh
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICAA 188 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~g 188 (472)
.. -+++..+-|++..+.|+-++++.++
T Consensus 69 ~~--l~~~~~~~l~~yV~~Ggglv~~H~a 95 (281)
T 4e5v_A 69 DS--WPEETNRRFLEYVQNGGGVVIYHAA 95 (281)
T ss_dssp SC--CCHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred Cc--CCHHHHHHHHHHHHcCCCEEEEecc
Confidence 11 2466777788888899999999874
No 169
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=45.87 E-value=52 Score=31.11 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=49.5
Q ss_pred CcEEEEEeCCCCc--HHHHHHHHHHHHhCCCEEEEEeeCCCccee---c-c-----CCceeeeCCCcCCCCCCcccEEEE
Q 012037 84 PKKVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVE---A-S-----SGTRLVADTSISNCSHQVFDLIAL 152 (472)
Q Consensus 84 ~~kV~ill~~g~~--~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~-~-----~G~~v~~d~~~~~~~~~~~D~viv 152 (472)
|+||+|+.-++-. ...+..+.+.|++.|+++.+...... ... . . .|..+.. ..-.......+|+|++
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAV-DRGSLHLAPDDMRAMGVEIEV-VDADQHAADGCELVLV 81 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-------------------------------------CCCEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hhhcccccccccccccccccc-cccccccccCCCEEEE
Confidence 6899999876543 22356678888899999877654422 110 0 0 0100110 0000112246899999
Q ss_pred cCCccccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 153 PGGMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 153 pGG~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.|| |..+.+-++.....+.++.+|-.
T Consensus 82 ~GG---------DGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 82 LGG---------DGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp EEC---------HHHHHHHHHHHHHHTCCEEEEEC
T ss_pred EeC---------CHHHHHHHHHhccCCCCEEEEeC
Confidence 999 35566666766667788888865
No 170
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=45.71 E-value=25 Score=33.22 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=53.1
Q ss_pred CCCCcEEEEEeCCCC---c-HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 81 AVPPKKVLVPVGFGT---E-EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 81 ~~~~~kV~ill~~g~---~-~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
...|+|+.|++.+.. . ..-+..+...|+++++++++.-.+..... ..+..+ + . ..+|.|++.||
T Consensus 5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a-----~~~~~~--~---~-~~~d~vv~~GG- 72 (304)
T 3s40_A 5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDA-----TKYCQE--F---A-SKVDLIIVFGG- 72 (304)
T ss_dssp CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHH-----HHHHHH--H---T-TTCSEEEEEEC-
T ss_pred cCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchH-----HHHHHH--h---h-cCCCEEEEEcc-
Confidence 445789999998732 1 23345677888899999887754422111 111111 1 1 16899999999
Q ss_pred cccccccCChHHHHHHHHHHh--cCCeEEEEch
Q 012037 157 PGSVRLRDCEILKKITSKQAE--EKRLYGAICA 187 (472)
Q Consensus 157 ~~~~~l~~~~~~~~~l~~~~~--~~k~I~aic~ 187 (472)
|..+.+.+..... ...+++.|-.
T Consensus 73 --------DGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 73 --------DGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp --------HHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred --------chHHHHHHHHHhhCCCCCcEEEecC
Confidence 3455566666655 5677777754
No 171
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=44.67 E-value=34 Score=33.57 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCCCc--HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 83 PPKKVLVPVGFGTE--EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 83 ~~~kV~ill~~g~~--~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.++||.|+.+...- ..=+-.+.+.+...|++++++....- .+ .....++. ++|+|++..- ..
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-~~----------~~~~~~l~--~~D~iiigsP---~y 318 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-DI----------TKVALHTY--DSGAVAFASP---TL 318 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-CH----------HHHHHHHH--TCSEEEEECC---CB
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-CH----------HHHHHHHH--hCCEEEEEcC---cc
Confidence 36788887765432 22233456666667888887765431 10 00111222 6999998542 22
Q ss_pred cccCChHHHHHHHHHHh----cCCeEEEEchhh
Q 012037 161 RLRDCEILKKITSKQAE----EKRLYGAICAAP 189 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~----~~k~I~aic~g~ 189 (472)
.....+.+..|+.+... ++|+++.+|+++
T Consensus 319 ~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g 351 (414)
T 2q9u_A 319 NNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFG 351 (414)
T ss_dssp TTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEES
T ss_pred CcCchHHHHHHHHHHHhhcccCCCEEEEEEecC
Confidence 22234567778877654 789999888864
No 172
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=44.30 E-value=60 Score=31.75 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=55.4
Q ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
.++||+|+-+....-.+ .-.+.+.+...+++++++..... .+ ....+++ .++|.|++..-. .
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-~~----------~~~~~~l--~~~D~iiigsP~---y 318 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-DI----------TKVALHT--YDSGAVAFASPT---L 318 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-CH----------HHHHHHH--HTCSEEEEECCC---B
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-CH----------HHHHHHH--HhCCEEEEEcCc---c
Confidence 46899888876543333 23466777778888888876542 10 0112244 578999986532 1
Q ss_pred cccccHHHHHHHHHHHH----cCCeEEEEchhH
Q 012037 364 RLQKSRILKKLLKEQKV----AGRIYGAVCSSP 392 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~----~g~~v~aic~G~ 392 (472)
...-.+.+..||.+... ++|.++.++++.
T Consensus 319 ~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g 351 (414)
T 2q9u_A 319 NNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFG 351 (414)
T ss_dssp TTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEES
T ss_pred CcCchHHHHHHHHHHHhhcccCCCEEEEEEecC
Confidence 12234456666666543 789988888764
No 173
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=43.21 E-value=61 Score=34.46 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHh
Q 012037 98 MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAE 177 (472)
Q Consensus 98 ~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~ 177 (472)
.++...+..|.+.|+.++++.++. +.+ .|++||+|.-. .-++.+.+.|+++.+
T Consensus 425 ~~~~~~y~aL~~~gi~vD~v~~~~-------------------dL~--~Yklvv~P~~~------~~~~~~~~~L~~yV~ 477 (675)
T 3tty_A 425 NEVHKYYDALYKQNIQTDMISVEE-------------------DLS--KYKVVIAPVMY------MVKPGFAERVERFVA 477 (675)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTS-------------------CCT--TCSEEEETTCC------BCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCceEEEecCcC-------------------Ccc--cCCEEEEeccE------ecCHHHHHHHHHHHh
Confidence 356789999999999999998762 122 69999999863 235678888888888
Q ss_pred cCCeEEEEch
Q 012037 178 EKRLYGAICA 187 (472)
Q Consensus 178 ~~k~I~aic~ 187 (472)
+|..+.+.+-
T Consensus 478 ~GG~lv~t~~ 487 (675)
T 3tty_A 478 QGGTFVTTFF 487 (675)
T ss_dssp TTCEEEEETT
T ss_pred cCCEEEEEcc
Confidence 8887776654
No 174
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=42.65 E-value=84 Score=25.52 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=48.7
Q ss_pred CcEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCC-cccEEEEcCCccccc
Q 012037 84 PKKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQ-VFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~-~~D~vivpGG~~~~~ 160 (472)
|+||.|+-.. |....=...+.+.+...|++++++....- . ..+ .. .+|.|++.....+..
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~-~--------------~~~--l~~~~d~ii~g~pty~~~ 63 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA-S--------------AEN--LADGYDAVLFGCSAWGME 63 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB-C--------------CTT--TTTTCSEEEEEECEECSS
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC-C--------------HhH--hcccCCEEEEEecccCCC
Confidence 4678887665 33333333456677778999988876631 1 111 12 689888843211100
Q ss_pred cccCChHHHHHHHHHHh---cCCeEEEEchh
Q 012037 161 RLRDCEILKKITSKQAE---EKRLYGAICAA 188 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~---~~k~I~aic~g 188 (472)
.=.-.+.+.+|+.+... ++|.++.++.|
T Consensus 64 ~G~~p~~~~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 64 DLEMQDDFLSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp SCEECHHHHHHHTTGGGTCCTTCEEEEEEEE
T ss_pred CCCCcHHHHHHHHHhhccCCCCCEEEEEEeC
Confidence 00123567777776443 57888888774
No 175
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=42.65 E-value=21 Score=32.41 Aligned_cols=102 Identities=9% Similarity=0.047 Sum_probs=53.6
Q ss_pred CcEEEEEeCC----CCcHHHHHHHHHHHHhC-CCEEEEEeeCCCcceeccCCc-e--e-eeCCCc---CCC-----CCCc
Q 012037 84 PKKVLVPVGF----GTEEMEAVIIVDVLRRA-GAQVTMASVEPQLEVEASSGT-R--L-VADTSI---SNC-----SHQV 146 (472)
Q Consensus 84 ~~kV~ill~~----g~~~~e~~~~~~~l~~a-g~~v~~vs~~~g~~v~~~~G~-~--v-~~d~~~---~~~-----~~~~ 146 (472)
|+||.++... |....=+..+.+.+++. |.+++++....- .+..-.|. . . .....+ ++. ....
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~-~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~ 79 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNS-ELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE 79 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTC-CCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccC-CCCCCCchHHhhccCCCCccchHHHHHHHHHHHHH
Confidence 4688888765 34444444566777777 999999876642 22211111 0 0 000001 111 1136
Q ss_pred ccEEEEcCCccccccccCChHHHHHHHHHH-------hcCCeEEEEchhh
Q 012037 147 FDLIALPGGMPGSVRLRDCEILKKITSKQA-------EEKRLYGAICAAP 189 (472)
Q Consensus 147 ~D~vivpGG~~~~~~l~~~~~~~~~l~~~~-------~~~k~I~aic~g~ 189 (472)
+|+||+.. ......-.+.+..||.+.. -.+|+++.++++|
T Consensus 80 AD~iI~~s---P~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g 126 (242)
T 1sqs_A 80 SDIIIISS---PVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAE 126 (242)
T ss_dssp CSEEEEEE---EECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEES
T ss_pred CCEEEEEc---cccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCC
Confidence 89999832 1222233466777777652 2467777777643
No 176
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=42.41 E-value=16 Score=35.23 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=54.5
Q ss_pred CcEEEEEeCCCCcH-HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 84 PKKVLVPVGFGTEE-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 84 ~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
++|++|++.+..-. ..+..+.+.|+++|+++.+...+...... .+. .+.....+|.|++.||
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~-----~~~-----~~~~~~~~d~vvv~GG------- 91 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAA-----RYV-----EEARKFGVATVIAGGG------- 91 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHH-----HHH-----HHHHHHTCSEEEEEES-------
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHH-----HHH-----HHHHhcCCCEEEEEcc-------
Confidence 57899998763221 33456788888999988876544210110 110 0011125899999999
Q ss_pred cCChHHHHHHHHHH----hcCCeEEEE--chhhHHhhhcCCCC
Q 012037 163 RDCEILKKITSKQA----EEKRLYGAI--CAAPAVTLLPWGLL 199 (472)
Q Consensus 163 ~~~~~~~~~l~~~~----~~~k~I~ai--c~g~~~lLa~aGlL 199 (472)
|..+.+.++... ....+|+.+ +++ -.+....|+.
T Consensus 92 --DGTl~~v~~~l~~~~~~~~~plgiiP~Gt~-N~fa~~l~i~ 131 (332)
T 2bon_A 92 --DGTINEVSTALIQCEGDDIPALGILPLGTA-NDFATSVGIP 131 (332)
T ss_dssp --HHHHHHHHHHHHHCCSSCCCEEEEEECSSS-CHHHHHTTCC
T ss_pred --chHHHHHHHHHhhcccCCCCeEEEecCcCH-HHHHHhcCCC
Confidence 355666666666 456677766 333 2233345543
No 177
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=42.13 E-value=33 Score=28.88 Aligned_cols=90 Identities=16% Similarity=0.015 Sum_probs=48.2
Q ss_pred CEEEEEeCC--CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcc
Q 012037 288 PRVLIPIAN--GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERL 365 (472)
Q Consensus 288 ~~V~il~~~--g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~ 365 (472)
|||.|+-+. |....=.-.+.+.|...|++++++..... . .+....++ .+||.|++.....+ ..+
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~-~----------~~~~~~~~--~~~d~ii~Gspty~-g~~ 66 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV-D----------PQELIEAV--SSARGIVLGTPPSQ-PSE 66 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC-C----------HHHHHHHH--HHCSEEEEECCBSS-CCH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-C----------HHHHHHHH--HhCCEEEEEcCCcC-Cch
Confidence 356666654 33333344567788888888887766542 0 01111222 46898888653221 112
Q ss_pred cccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 366 QKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 366 ~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
.. ..+++.+....-+++.++.++++.
T Consensus 67 p~-~~fl~~l~~~~l~gk~v~~fgs~g 92 (161)
T 3hly_A 67 AV-ATALSTIFAAAHNKQAIGLFDSYG 92 (161)
T ss_dssp HH-HHHHHHHHHHCCTTSEEEEECCCC
T ss_pred hH-HHHHHHHHhhhhCCCEEEEEEcCC
Confidence 11 233333333224789999998754
No 178
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=41.15 E-value=24 Score=29.79 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=47.7
Q ss_pred cEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 85 KKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 85 ~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
|||.|+-+. |....=.-.+.+.|...|++++++....- . .+....++ .+||.|++.....+
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~-~----------~~~~~~~~--~~~d~ii~Gspty~---- 63 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV-D----------PQELIEAV--SSARGIVLGTPPSQ---- 63 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC-C----------HHHHHHHH--HHCSEEEEECCBSS----
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-C----------HHHHHHHH--HhCCEEEEEcCCcC----
Confidence 356666554 33344444567778888888888765531 1 00001111 26899988432111
Q ss_pred cCChHHHHHHHHHH---hcCCeEEEEchhhH
Q 012037 163 RDCEILKKITSKQA---EEKRLYGAICAAPA 190 (472)
Q Consensus 163 ~~~~~~~~~l~~~~---~~~k~I~aic~g~~ 190 (472)
..-+. ..|+.+.. -.+|+++.++++++
T Consensus 64 g~~p~-~~fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 64 PSEAV-ATALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp CCHHH-HHHHHHHHHHCCTTSEEEEECCCCS
T ss_pred CchhH-HHHHHHHHhhhhCCCEEEEEEcCCC
Confidence 11122 55555543 37899999988543
No 179
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=40.99 E-value=34 Score=32.12 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=47.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ 366 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 366 (472)
.|||+|+.-++-. ...+.+.|+..|+++.+...... .. .+.|++|+.||.+
T Consensus 29 ~mki~iv~~~~~~---~~~l~~~L~~~g~~v~~~~~~~~------------------~~--~~~DlvIvlGGDG------ 79 (278)
T 1z0s_A 29 GMRAAVVYKTDGH---VKRIEEALKRLEVEVELFNQPSE------------------EL--ENFDFIVSVGGDG------ 79 (278)
T ss_dssp -CEEEEEESSSTT---HHHHHHHHHHTTCEEEEESSCCG------------------GG--GGSSEEEEEECHH------
T ss_pred ceEEEEEeCCcHH---HHHHHHHHHHCCCEEEEcccccc------------------cc--CCCCEEEEECCCH------
Confidence 4688888776655 66678889999998865432111 11 3579999999852
Q ss_pred ccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 367 KSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 367 ~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
-++...+.+... .+|.+|..|.
T Consensus 80 ---T~L~aa~~~~~~-~PilGIN~G~ 101 (278)
T 1z0s_A 80 ---TILRILQKLKRC-PPIFGINTGR 101 (278)
T ss_dssp ---HHHHHHTTCSSC-CCEEEEECSS
T ss_pred ---HHHHHHHHhCCC-CcEEEECCCC
Confidence 233444444444 7899998874
No 180
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=40.64 E-value=81 Score=25.39 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEc
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILP 356 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livp 356 (472)
.+++|+|+-...-..---..++..|...||++.-+.+..+ .+ .|.+..+ ++.++. . .|+++|.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~-~i---~G~~~y~--sl~dlp-~-vDlavi~ 65 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKG-EV---LGKTIIN--ERPVIE-G-VDTVTLY 65 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCS-EE---TTEECBC--SCCCCT-T-CCEEEEC
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCC-cC---CCeeccC--ChHHCC-C-CCEEEEE
Confidence 4578899866433322234566677778998888887765 44 5666555 577774 3 8988875
No 181
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=40.13 E-value=50 Score=30.62 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=39.2
Q ss_pred cEEEEEeCCCCcHHHH-HHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccccc
Q 012037 85 KKVLVPVGFGTEEMEA-VIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLR 163 (472)
Q Consensus 85 ~kV~ill~~g~~~~e~-~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~ 163 (472)
|||+|+..+.-...++ ..+.+.|++.|+++. ...+|+||+-||
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~----------------------------~~~~D~vv~lGG-------- 44 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD----------------------------DVEPEIVISIGG-------- 44 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC----------------------------SSSCSEEEEEES--------
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC----------------------------CCCCCEEEEEcC--------
Confidence 4788887753222222 234455666677651 125788888888
Q ss_pred CChHHHHHHHHHHhc--CCeEEEEch
Q 012037 164 DCEILKKITSKQAEE--KRLYGAICA 187 (472)
Q Consensus 164 ~~~~~~~~l~~~~~~--~k~I~aic~ 187 (472)
|..+.+-.+..... +.+|.+|-.
T Consensus 45 -DGT~l~aa~~~~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 45 -DGTFLSAFHQYEERLDEIAFIGIHT 69 (272)
T ss_dssp -HHHHHHHHHHTGGGTTTCEEEEEES
T ss_pred -cHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 34555556655554 778888844
No 182
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=39.91 E-value=32 Score=33.04 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=55.9
Q ss_pred CcEEEEEeCCCCc---H-HHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 84 PKKVLVPVGFGTE---E-MEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 84 ~~kV~ill~~g~~---~-~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
|+|++|++.+..- . ..+..+.+.|+++|+++.+...+...... .+.. +.....+|.|++.||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~-----~~~~-----~~~~~~~d~vvv~GG---- 89 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDAT-----LEAE-----RAMHENYDVLIAAGG---- 89 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHH-----HHHH-----HHTTTTCSEEEEEEC----
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHH-----HHHH-----HHhhcCCCEEEEEcC----
Confidence 5789999877432 2 33456788889999988877544310111 1110 111135899999999
Q ss_pred ccccCChHHHHHHHHH--HhcCCeEEEEchhhHHhhhcC-CC
Q 012037 160 VRLRDCEILKKITSKQ--AEEKRLYGAICAAPAVTLLPW-GL 198 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~--~~~~k~I~aic~g~~~lLa~a-Gl 198 (472)
|..+.+.++.. .....+|+.|-.|-.=.||+. |+
T Consensus 90 -----DGTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg~ 126 (337)
T 2qv7_A 90 -----DGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHI 126 (337)
T ss_dssp -----HHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTC
T ss_pred -----chHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcCC
Confidence 34555666665 345677777744321135543 44
No 183
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=38.29 E-value=57 Score=29.42 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=42.9
Q ss_pred cEEEEEeCC----CC---cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 85 KKVLVPVGF----GT---EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 85 ~kV~ill~~----g~---~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
+||+|+-.. || -.+|...+.+.+...|.+|+++|...| ... .+++++++..||-|+|..
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~-iy~----------~~fd~vd~n~ydr~~vvn 66 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNG-VYT----------KSFDEVDVNDYDRLIVVN 66 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCC-SSE----------EEGGGSCGGGCSEEEEEC
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccc-eee----------eecccCCccccceEEEEe
Confidence 467777533 22 367778888999999999999999976 221 245667777999998864
No 184
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=38.25 E-value=29 Score=28.38 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=44.4
Q ss_pred CEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCc-ccEEEEcCCCcchhc
Q 012037 288 PRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESV-YDLIILPGGVAGAER 364 (472)
Q Consensus 288 ~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~-~D~livpGG~~~~~~ 364 (472)
|||.|+-+...--.+ .-.+.+.+...+++++++....- ...++ .+ +|.|++..-..+.-.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~~d~ii~~~p~y~~g~ 63 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASV---------------EAGGL--FEGFDLVLLGCSTWGDDS 63 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGC---------------CSTTT--TTTCSEEEEEECEECSSS
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhC---------------CHHHh--cCcCCEEEEEeCCCCCCC
Confidence 466666654332222 22345666667888887765432 12233 56 898888542110001
Q ss_pred --ccccHHHHHHHHHH---HHcCCeEEEEchh
Q 012037 365 --LQKSRILKKLLKEQ---KVAGRIYGAVCSS 391 (472)
Q Consensus 365 --~~~~~~l~~~L~~~---~~~g~~v~aic~G 391 (472)
+ ...+..|+++. .-+++.++.+|+|
T Consensus 64 ~~~--p~~~~~fl~~l~~~~l~~k~~~v~~~g 93 (147)
T 1f4p_A 64 IEL--QDDFIPLFDSLEETGAQGRKVACFGCG 93 (147)
T ss_dssp CEE--CTTTHHHHHTGGGSCCTTCEEEEEEEE
T ss_pred cCC--ChhHHHHHHHHHhcccCCCEEEEEeec
Confidence 1 22344455543 2357788877775
No 185
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=38.11 E-value=67 Score=34.14 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHc
Q 012037 302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA 381 (472)
Q Consensus 302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~ 381 (472)
++...+..|.+.|+.+++++++. +. ++|++||+|.-. .-++++.+.|+++.++
T Consensus 426 ~~~~~y~aL~~~gi~vD~v~~~~-------------------dL--~~Yklvv~P~~~------~~~~~~~~~L~~yV~~ 478 (675)
T 3tty_A 426 EVHKYYDALYKQNIQTDMISVEE-------------------DL--SKYKVVIAPVMY------MVKPGFAERVERFVAQ 478 (675)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTS-------------------CC--TTCSEEEETTCC------BCCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCceEEEecCcC-------------------Cc--ccCCEEEEeccE------ecCHHHHHHHHHHHhc
Confidence 56789999999999999997652 22 579999999854 2356788889999887
Q ss_pred CCeEEEE-chhH
Q 012037 382 GRIYGAV-CSSP 392 (472)
Q Consensus 382 g~~v~ai-c~G~ 392 (472)
|..+..- ++|.
T Consensus 479 GG~lv~t~~sG~ 490 (675)
T 3tty_A 479 GGTFVTTFFSGI 490 (675)
T ss_dssp TCEEEEETTCSC
T ss_pred CCEEEEEccCCc
Confidence 7665444 3443
No 186
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=37.18 E-value=30 Score=31.59 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=54.4
Q ss_pred CCCcEEEEEeCCCCc---HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 82 VPPKKVLVPVGFGTE---EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 82 ~~~~kV~ill~~g~~---~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
.++++|++++.+-.+ ..-+.++.+.+++.||++.+...... .-. ... .++......+|+||+.+..
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~-----~~~---~~~~l~~~~vdgiIi~~~~-- 71 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN-DQT-----QVS---QIQTLIAQKPDAIIEQLGN-- 71 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHH-----HHH---HHHHHHHHCCSEEEEESSC--
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCC-HHH-----HHH---HHHHHHHcCCCEEEEeCCC--
Confidence 457899999986332 33456677777888999988865532 100 000 1111112358999986541
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.+++..+.+.++..+..
T Consensus 72 ------~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 72 ------LDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp ------HHHHHHHHHHHHHTTCCEEEESC
T ss_pred ------hhhhHHHHHHHHHCCCcEEEecC
Confidence 12345567777788999888765
No 187
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=36.83 E-value=36 Score=32.30 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEee-------------cCCccccCCCcccEE
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIA-------------DKSISDAAESVYDLI 353 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~-------------d~~l~~~~~~~~D~l 353 (472)
++||+|+ |.-.+-.. +...|.++|++|.++..+.. .-....|+++.. ....+++ ..++|+|
T Consensus 2 ~mkI~Ii---GaGaiG~~-~a~~L~~~g~~V~~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~-~~~~DlV 75 (320)
T 3i83_A 2 SLNILVI---GTGAIGSF-YGALLAKTGHCVSVVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAEL-ETKPDCT 75 (320)
T ss_dssp -CEEEEE---SCCHHHHH-HHHHHHHTTCEEEEECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGC-SSCCSEE
T ss_pred CCEEEEE---CcCHHHHH-HHHHHHhCCCeEEEEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHc-CCCCCEE
Confidence 4688887 55444443 33456678899998876531 111112333221 1123333 1378999
Q ss_pred EEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 354 ILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 354 ivpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
|+.==. . ..+.+++.|+.....+..|..+++|.
T Consensus 76 ilavK~---~---~~~~~l~~l~~~l~~~t~Iv~~~nGi 108 (320)
T 3i83_A 76 LLCIKV---V---EGADRVGLLRDAVAPDTGIVLISNGI 108 (320)
T ss_dssp EECCCC---C---TTCCHHHHHTTSCCTTCEEEEECSSS
T ss_pred EEecCC---C---ChHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 986311 1 12245555665556677888888886
No 188
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=36.67 E-value=49 Score=27.79 Aligned_cols=91 Identities=7% Similarity=-0.053 Sum_probs=51.1
Q ss_pred CCEEEEEeCCC--CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANG--SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g--~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
.++|+|+-+.. ....=.-.+.+.|...|.+++++..... . ..+..+.++ .+||.||+........
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~-~---------~~~~~~~~~--~~~d~ii~Gspty~g~- 70 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA-V---------DLQELRELV--GRCTGLVIGMSPAASA- 70 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC-C---------CHHHHHHHH--HTEEEEEEECCBTTSH-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc-C---------CHHHHHHHH--HhCCEEEEEcCcCCCC-
Confidence 35787776653 3333344577888888988888766531 0 001112233 5699888865322111
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchh
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSS 391 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G 391 (472)
+. ...+++.|....-+++.++.++++
T Consensus 71 ~p-~~~~l~~l~~~~~~~k~va~fgs~ 96 (159)
T 3fni_A 71 AS-IQGALSTILGSVNEKQAVGIFETG 96 (159)
T ss_dssp HH-HHHHHHHHHHHCCTTSEEEEECCS
T ss_pred cc-HHHHHHHHHhhcccCCEEEEEEcC
Confidence 22 133444444333478999988875
No 189
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=34.59 E-value=41 Score=31.17 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=54.5
Q ss_pred CcEEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.++|++++.+ .|...-+.++.+.+++.||++.+...... .-. ... .++......+|+||+.+..
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~-----~~~---~i~~l~~~~vdgiIi~~~~---- 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN-EET-----QMS---QIENMINRGVDVLVIIPYN---- 68 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTC-HHH-----HHH---HHHHHHHTTCSEEEEECSS----
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHH-----HHH---HHHHHHHcCCCEEEEeCCC----
Confidence 5689999875 46666677788888899999988876532 100 000 1111112258999986642
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.+++..+.+.++..+..
T Consensus 69 ----~~~~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 69 ----GQVLSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp ----TTSCHHHHHHHHTTTCEEEEESS
T ss_pred ----hhhhHHHHHHHHHCCCeEEEECC
Confidence 11233466777778999988876
No 190
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=34.59 E-value=40 Score=31.52 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=51.0
Q ss_pred CCEEEEEeCCCCC--HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 287 MPRVLIPIANGSE--EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 287 ~~~V~il~~~g~~--~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
|+||+|+.-++-. ...+..+.+.|+..|+++.+...... .. ...+..... .++. ..++|+||+.||.+
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-~~-~~~~~~~~~---~~~~-~~~~D~vi~~GGDG---- 74 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAH-EL-QLKNVPTGT---LAEI-GQQADLAVVVGGDG---- 74 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHH-HT-TCSSCCEEC---HHHH-HHHCSEEEECSCHH----
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-hc-ccccccccc---hhhc-ccCCCEEEEEcCcH----
Confidence 6788888765422 12255677888999998876533211 10 001111111 1111 14689999999952
Q ss_pred ccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 365 LQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
-+++.++.+...+.++.+|-.|.
T Consensus 75 -----T~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 75 -----NMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp -----HHHHHHHHHTTSSCEEEEBCSSS
T ss_pred -----HHHHHHHHhhcCCCCEEEEECCC
Confidence 34556666666678888887665
No 191
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=33.11 E-value=60 Score=27.26 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=49.1
Q ss_pred CcEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
.+||.|+-+. |....=.-.+.+.+...|.+++++....- . ..+....++ .+||+|++...... ..
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~--------~~~~~~~~~--~~~d~ii~Gspty~-g~ 70 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA--V--------DLQELRELV--GRCTGLVIGMSPAA-SA 70 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC--C--------CHHHHHHHH--HTEEEEEEECCBTT-SH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc--C--------CHHHHHHHH--HhCCEEEEEcCcCC-CC
Confidence 3577777654 44444444577788888999888776521 0 011111122 25999998432111 11
Q ss_pred ccCChHHHHHHHHH---HhcCCeEEEEchhh
Q 012037 162 LRDCEILKKITSKQ---AEEKRLYGAICAAP 189 (472)
Q Consensus 162 l~~~~~~~~~l~~~---~~~~k~I~aic~g~ 189 (472)
+ + ...|+.+. .-.+|.++.+++++
T Consensus 71 ~---p-~~~~l~~l~~~~~~~k~va~fgs~g 97 (159)
T 3fni_A 71 A---S-IQGALSTILGSVNEKQAVGIFETGG 97 (159)
T ss_dssp H---H-HHHHHHHHHHHCCTTSEEEEECCSS
T ss_pred c---c-HHHHHHHHHhhcccCCEEEEEEcCC
Confidence 1 2 24455443 33689999998854
No 192
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=32.79 E-value=2.6e+02 Score=24.80 Aligned_cols=80 Identities=10% Similarity=-0.180 Sum_probs=48.2
Q ss_pred CCCcEEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 82 VPPKKVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 82 ~~~~kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
.++++|++++.+ .|...-+.++.+.+++.||++.+...+.. . .. . ..+ .+|+||+.+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~-~~------~--~~~------~vdgiI~~~~~-- 67 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKS-H-LF------I--PEK------MVDGAIILDWT-- 67 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTT-T-TC------C--CTT------TCSEEEEECTT--
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCC-H-HH------H--hhc------cccEEEEecCC--
Confidence 356789999864 34455556677778888999887765432 1 00 0 011 58999986641
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.+.. .+++..+.+.++..+..
T Consensus 68 -----~~~~---~~~~l~~~~iPvV~~~~ 88 (277)
T 3cs3_A 68 -----FPTK---EIEKFAERGHSIVVLDR 88 (277)
T ss_dssp -----SCHH---HHHHHHHTTCEEEESSS
T ss_pred -----CCHH---HHHHHHhcCCCEEEEec
Confidence 1122 23444457888877654
No 193
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=31.48 E-value=34 Score=31.55 Aligned_cols=89 Identities=8% Similarity=-0.130 Sum_probs=50.9
Q ss_pred CCcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 83 PPKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 83 ~~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
+.++|++++.+. |...-+.++.+.+++.||++.++....+.. .. .. ..+.......+|+||+.+..
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~----~~---~~i~~l~~~~vdgiIi~~~~--- 71 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDI-QE----QI---TVLEQAIAKNPAGIAISAID--- 71 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCH-HH----HH---HHHHHHHHHCCSEEEECCSS---
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCH-HH----HH---HHHHHHHHhCCCEEEEcCCC---
Confidence 467999999763 444445566777777899998854332211 00 00 01111112358999986641
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.+++..+.+.++..+..
T Consensus 72 -----~~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 72 -----PVELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp -----TTTTHHHHHHHHHTTCCEEEESS
T ss_pred -----HHHHHHHHHHHHHCCCcEEEECC
Confidence 12234456667778888888765
No 194
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=31.20 E-value=92 Score=26.70 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=50.7
Q ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCc-ceec-CCCcEEeec----CCccccCCCcccEEEEcC
Q 012037 286 RMPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERST-QIVA-SQGVKIIAD----KSISDAAESVYDLIILPG 357 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~-~v~s-~~G~~v~~d----~~l~~~~~~~~D~livpG 357 (472)
+|+||+|+.+. ..-.+ .-.+.+.+...|.+++++....-- +... ..+.. ..| ...+++ .++|.||+..
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~d~~~~~~~~~l--~~aD~ii~gs 78 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFD-KVKDIPEVTLDDM--RWADGFAIGS 78 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGG-GSTTSCBCCHHHH--HHCSEEEEEE
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCC-cccccccccHHHH--HhCCEEEEEC
Confidence 35789888877 33222 223455566678888888765410 1110 11110 000 013333 5789988853
Q ss_pred CCcchhcccccHHHHHHHHHHH-------HcCCeEEEEchh
Q 012037 358 GVAGAERLQKSRILKKLLKEQK-------VAGRIYGAVCSS 391 (472)
Q Consensus 358 G~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 391 (472)
- .....-...+..||.+.. -++|+++.++++
T Consensus 79 P---~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (199)
T 2zki_A 79 P---TRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEA 116 (199)
T ss_dssp E---CBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEB
T ss_pred C---ccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeC
Confidence 1 122233456667776642 246777666654
No 195
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=31.06 E-value=1.1e+02 Score=28.02 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=43.6
Q ss_pred HHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHhcCCeE
Q 012037 103 IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAEEKRLY 182 (472)
Q Consensus 103 ~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~~~k~I 182 (472)
+.+.|+..||+|++++.+.- . ..++.-...+||+||.-|-. .... -+++..+-|+++.++|+-+
T Consensus 37 i~~~L~~~gf~V~~~t~dd~-~------------~~~~~~~L~~~DvvV~~~~~-~~~~--l~~~~~~al~~~V~~GgG~ 100 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEP-E------------HGLTDEVLDRCDVLVWWGHI-AHDE--VKDEVVERVHRRVLEGMGL 100 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSG-G------------GGCCHHHHHTCSEEEEECSS-CGGG--SCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhCCcEEEEEeccCc-c------------ccCCHhHHhcCCEEEEecCC-CCCc--CCHHHHHHHHHHHHcCCCE
Confidence 47888889999999874421 0 00111112379999984310 1111 3566777788888999999
Q ss_pred EEEchh
Q 012037 183 GAICAA 188 (472)
Q Consensus 183 ~aic~g 188 (472)
+++-+|
T Consensus 101 vgiH~a 106 (252)
T 1t0b_A 101 IVLHSG 106 (252)
T ss_dssp EEEGGG
T ss_pred EEEccc
Confidence 998663
No 196
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=30.76 E-value=36 Score=28.84 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=42.6
Q ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
.|+++.|+-+...--.+ .-.+.+.|...+++++++..+.. ...++ .++|.||+.....+.-
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~ii~g~pt~g~G 70 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDY---------------KFKQI--ASEKLLIVVTSTQGEG 70 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGC---------------CGGGG--GGCSEEEEEEECBGGG
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhC---------------CHHHh--ccCCeEEEEEcccCCC
Confidence 45677777665443333 23345666666777776654321 12333 5689888754322111
Q ss_pred cccc-cHHHHHHHHHH---HHcCCeEEEEchh
Q 012037 364 RLQK-SRILKKLLKEQ---KVAGRIYGAVCSS 391 (472)
Q Consensus 364 ~~~~-~~~l~~~L~~~---~~~g~~v~aic~G 391 (472)
.+.. -..++++|+.. .-+++.++..|.|
T Consensus 71 ~~p~~~~~f~~~l~~~~~~~l~~k~~avfg~G 102 (167)
T 1ykg_A 71 EPPEEAVALHKFLFSKKAPKLENTAFAVFSLG 102 (167)
T ss_dssp BCCGGGHHHHHHHTSTTCCCCTTCEEEEEEEC
T ss_pred cCChhHHHHHHHHHhccccccCCCEEEEEeec
Confidence 2222 13344444321 1246777777654
No 197
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=30.30 E-value=39 Score=30.81 Aligned_cols=89 Identities=9% Similarity=-0.096 Sum_probs=51.2
Q ss_pred CCCcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccc
Q 012037 82 VPPKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPG 158 (472)
Q Consensus 82 ~~~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~ 158 (472)
.++++|++++.+- |...-+.++.+.+++.||++.+...+.. .-. ... .+.......+|+||+.+..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~-----~~~---~~~~l~~~~vdgiI~~~~~-- 74 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RIS-----ERE---QILEFVHLKVDAIFITTLD-- 74 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHH-----HHH---HHHHHHHTTCSEEEEECSC--
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHH-----HHH---HHHHHHHcCCCEEEEecCC--
Confidence 3568999999763 3344455666777788999988765532 100 000 1111112358999986541
Q ss_pred cccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 159 SVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 159 ~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.+++..+.+.++..+..
T Consensus 75 ------~~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 75 ------DVYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp ------TTTTHHHHHHHHHTTCCEEEESS
T ss_pred ------hHHHHHHHHHHHHcCCCEEEecC
Confidence 12233456666777889888866
No 198
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=30.27 E-value=57 Score=30.31 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=54.8
Q ss_pred CCcEEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 83 PPKKVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 83 ~~~kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
.+++|++++.+ .|...-+.++.+.+++.||++.+...+.. .-. ... .++..-...+|+||+.+..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~-----~~~---~i~~~~~~~vdgiIi~~~~--- 69 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDD-IPN-----QLS---QIENMVTKGVKVLVIASID--- 69 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHH-----HHH---HHHHHHHHTCSEEEECCSS---
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCC-HHH-----HHH---HHHHHHHcCCCEEEEEcCC---
Confidence 36789999975 34555566677888888999988875432 100 000 1111112358999986541
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.....+.+++..+.+.++..+..
T Consensus 70 -----~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 70 -----GTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp -----GGGGHHHHHHHHHTTCEEEEESS
T ss_pred -----chhHHHHHHHHHHCCCCEEEECC
Confidence 12344566777788999988876
No 199
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.25 E-value=1.2e+02 Score=28.48 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=28.6
Q ss_pred CCCEEEEEeCC---CCCHHHHHHHHHHHHhCCCeEEEEEecC
Q 012037 286 RMPRVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVER 324 (472)
Q Consensus 286 ~~~~V~il~~~---g~~~~e~~~~~d~l~~a~~~v~~vs~~~ 324 (472)
+..+|++++.+ .|...-+.++.+.+.+.||++.+...+.
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 108 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDY 108 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45789999875 3555556677888888899998776554
No 200
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=29.23 E-value=38 Score=31.06 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=55.3
Q ss_pred CCcEEEEEeCC----CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeC---CCcCCCCCCcccEEEEcCC
Q 012037 83 PPKKVLVPVGF----GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVAD---TSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 83 ~~~kV~ill~~----g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d---~~~~~~~~~~~D~vivpGG 155 (472)
.++||+++... +....-+..+.+.+.+.|.+++++....- ++...... .++ ...+.+ ...|+||+..
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~-pl~~~d~~--~~d~~~~l~~~i--~~AD~iI~~s- 106 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL-PLPDAAPV--SHPKVQELRELS--IWSEGQVWVS- 106 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC-CCTTSSCT--TSHHHHHHHHHH--HHCSEEEEEE-
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC-CCCcCCCC--CCHHHHHHHHHH--HHCCEEEEEe-
Confidence 46799988865 34444444567777778999999887653 44322110 000 001111 2579988832
Q ss_pred ccccccccCChHHHHHHHHHHh--------cCCeEEEEchhh
Q 012037 156 MPGSVRLRDCEILKKITSKQAE--------EKRLYGAICAAP 189 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~--------~~k~I~aic~g~ 189 (472)
......-.+.+..||-..+. .+|+++.++++|
T Consensus 107 --P~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG 146 (247)
T 2q62_A 107 --PERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSG 146 (247)
T ss_dssp --ECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECS
T ss_pred --CCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCC
Confidence 11122234566666665542 478888877754
No 201
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=28.26 E-value=21 Score=31.22 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=51.0
Q ss_pred CCEEEEEeCC----CCCHHHHHHHHHH-HHhCCCeEEEEEecCCccee---cCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIAN----GSEEIEIVTIVDI-LRRAKVDVVVASVERSTQIV---ASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~----g~~~~e~~~~~d~-l~~a~~~v~~vs~~~~~~v~---s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
|+||+++... |....=.-.+.+. |...|.+++++....- ++. ......-......+++ .++|.||+..-
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~-~~~~~~~~~~~~~~~~~~~~~i--~~aD~ii~~sP 78 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL-DPKALLRGDLSNAKLKEAVDAT--CNADGLIVATP 78 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS-CHHHHHHTCTTSHHHHHHHHHH--HHCSEEEEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc-CchhhcccccCcHHHHHHHHHH--HHCCEEEEEeC
Confidence 5688887765 3333333345566 7777888888876542 211 0000000000011223 56898888541
Q ss_pred CcchhcccccHHHHHHHHHH---HHcCCeEEEEchhH
Q 012037 359 VAGAERLQKSRILKKLLKEQ---KVAGRIYGAVCSSP 392 (472)
Q Consensus 359 ~~~~~~~~~~~~l~~~L~~~---~~~g~~v~aic~G~ 392 (472)
.....-...+..||... .-+||+++.+++|.
T Consensus 79 ---~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~tgg 112 (197)
T 2vzf_A 79 ---IYKASYTGLLKAFLDILPQFALAGKAALPLATGG 112 (197)
T ss_dssp ---CBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEEES
T ss_pred ---ccCCCCCHHHHHHHHhccccccCCCEEEEEEECC
Confidence 11122344555566543 23578888777653
No 202
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=27.65 E-value=2.4e+02 Score=22.67 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=44.7
Q ss_pred CcEEEEEeCC--CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGF--GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~--g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
|+||.|+-+. |....=.-.+.+.+...|++++++... ...+.. ++|.|++.....+...
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~-----------------~~~~l~--~~d~vi~g~pt~g~g~ 61 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP-----------------LLEDLP--ASGIWLVISSTHGAGD 61 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT-----------------TSCSSC--SEEEEEEECCTTTTCC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC-----------------CHHHcc--cCCeEEEEECccCCCC
Confidence 3567666543 444444445667777778887765210 122333 6898888543111111
Q ss_pred ccC-ChHHHHHHHHH--HhcCCeEEEEchh
Q 012037 162 LRD-CEILKKITSKQ--AEEKRLYGAICAA 188 (472)
Q Consensus 162 l~~-~~~~~~~l~~~--~~~~k~I~aic~g 188 (472)
... -..+.++++.. .-.++.++.++.|
T Consensus 62 ~p~~~~~f~~~l~~~~~~l~~~~~avfg~G 91 (147)
T 2hna_A 62 IPDNLSPFYEALQEQKPDLSAVRFGAIGIG 91 (147)
T ss_dssp TTSSCHHHHHHHHHHCCCTTEEEEEEESCC
T ss_pred CChhHHHHHHHHHhhccccCCCEEEEEecc
Confidence 221 24455555543 2345777777764
No 203
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=27.51 E-value=49 Score=28.48 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=45.9
Q ss_pred CcEEEEEeCCCC-----cHHHHHHHHHHHHhCC--CEEEEEeeCCCcceeccCC-------------ceeee------CC
Q 012037 84 PKKVLVPVGFGT-----EEMEAVIIVDVLRRAG--AQVTMASVEPQLEVEASSG-------------TRLVA------DT 137 (472)
Q Consensus 84 ~~kV~ill~~g~-----~~~e~~~~~~~l~~ag--~~v~~vs~~~g~~v~~~~G-------------~~v~~------d~ 137 (472)
|+||.++...-- ...=+..+.+.++++| .+++++..... .+..-.+ ..... +.
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~-~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 79 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN-PVPVLDGELVGAMRPGDAPLTPRQQDALALSDE 79 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS-CCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC-CCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 468888876533 2222334566666665 88998887642 2211000 00000 00
Q ss_pred CcCCCCCCcccEEEEcCCccccccccCChHHHHHHHHHHh
Q 012037 138 SISNCSHQVFDLIALPGGMPGSVRLRDCEILKKITSKQAE 177 (472)
Q Consensus 138 ~~~~~~~~~~D~vivpGG~~~~~~l~~~~~~~~~l~~~~~ 177 (472)
..+.+ ..+|.||+..= .....-...+..||.+...
T Consensus 80 ~~~~l--~~aD~iv~~~P---~y~~~~p~~lK~~iD~~~~ 114 (201)
T 1t5b_A 80 LIAEL--KAHDVIVIAAP---MYNFNIPTQLKNYFDLIAR 114 (201)
T ss_dssp HHHHH--HHCSEEEEECC---CBTTBCCHHHHHHHHHHCC
T ss_pred HHHHH--HhCCEEEEEeC---cccCcCCHHHHHHHHHhee
Confidence 11222 26899998431 2223345678889988764
No 204
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=27.48 E-value=1.6e+02 Score=29.76 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=40.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---ccCCceeeeCCCcCCCCCCcccEEEEcCCc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---ASSGTRLVADTSISNCSHQVFDLIALPGGM 156 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~~~G~~v~~d~~~~~~~~~~~D~vivpGG~ 156 (472)
..+||.|+=.-| ....++...|.+.|++|...-.... +.. ...|..+......++.. .+|.||+-.|.
T Consensus 21 ~~~~v~viGiG~---sG~s~~A~~l~~~G~~V~~~D~~~~-~~~~~l~~~gi~~~~g~~~~~~~--~~d~vV~Spgi 91 (494)
T 4hv4_A 21 RVRHIHFVGIGG---AGMGGIAEVLANEGYQISGSDLAPN-SVTQHLTALGAQIYFHHRPENVL--DASVVVVSTAI 91 (494)
T ss_dssp -CCEEEEETTTS---TTHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTTCEEESSCCGGGGT--TCSEEEECTTS
T ss_pred cCCEEEEEEEcH---hhHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHCCCEEECCCCHHHcC--CCCEEEECCCC
Confidence 357888885544 3444557899999999876543321 211 12466665443333333 68999997664
No 205
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=27.26 E-value=2.2e+02 Score=22.20 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHH--HHHHHHHHHH--
Q 012037 305 TIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRI--LKKLLKEQKV-- 380 (472)
Q Consensus 305 ~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~--l~~~L~~~~~-- 380 (472)
.+.+.+...+++++++..... ..+++ .++|.|++..-... -...+. +..|+++...
T Consensus 19 ~i~~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~vi~g~p~y~---~~~~~~~~~~~fl~~l~~~l 78 (137)
T 2fz5_A 19 EIEAAVKAAGADVESVRFEDT---------------NVDDV--ASKDVILLGCPAMG---SEELEDSVVEPFFTDLAPKL 78 (137)
T ss_dssp HHHHHHHHTTCCEEEEETTSC---------------CHHHH--HTCSEEEEECCCBT---TTBCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCeEEEEEcccC---------------CHHHH--hcCCEEEEEccccC---CCCCCHHHHHHHHHHhhhhc
Confidence 455667777888888765432 12334 57899888653211 112233 6777776533
Q ss_pred cCCeEEEEch
Q 012037 381 AGRIYGAVCS 390 (472)
Q Consensus 381 ~g~~v~aic~ 390 (472)
+++.++.+++
T Consensus 79 ~~k~~~~~~t 88 (137)
T 2fz5_A 79 KGKKVGLFGS 88 (137)
T ss_dssp SSCEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 6788887775
No 206
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=26.89 E-value=94 Score=24.26 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
..+++|.|+ ++ +......+...|...|+++..+.... .. .. .+.. ..+|++++|+.
T Consensus 16 ~~~~~iliv--dd-~~~~~~~l~~~L~~~g~~v~~~~~~~--~a-----l~-----~l~~---~~~dlvi~~~~------ 71 (137)
T 2pln_A 16 RGSMRVLLI--EK-NSVLGGEIEKGLNVKGFMADVTESLE--DG-----EY-----LMDI---RNYDLVMVSDK------ 71 (137)
T ss_dssp TTCSEEEEE--CS-CHHHHHHHHHHHHHTTCEEEEESCHH--HH-----HH-----HHHH---SCCSEEEECST------
T ss_pred CCCCeEEEE--eC-CHHHHHHHHHHHHHcCcEEEEeCCHH--HH-----HH-----HHHc---CCCCEEEEcCc------
Confidence 345676655 32 23344566778888899876443221 11 00 0111 14888884432
Q ss_pred ccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 162 LRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
+.-++.+.|++. ....+|+.+..
T Consensus 72 --~g~~~~~~l~~~-~~~~~ii~ls~ 94 (137)
T 2pln_A 72 --NALSFVSRIKEK-HSSIVVLVSSD 94 (137)
T ss_dssp --THHHHHHHHHHH-STTSEEEEEES
T ss_pred --cHHHHHHHHHhc-CCCccEEEEeC
Confidence 123566777766 21555555543
No 207
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=26.88 E-value=38 Score=30.63 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCEEEEEeCC----CCCHHHHHHHHHHHHhC-CCeEEEEEecCCcceecCCCc---------EEee--c---CCccccCC
Q 012037 287 MPRVLIPIAN----GSEEIEIVTIVDILRRA-KVDVVVASVERSTQIVASQGV---------KIIA--D---KSISDAAE 347 (472)
Q Consensus 287 ~~~V~il~~~----g~~~~e~~~~~d~l~~a-~~~v~~vs~~~~~~v~s~~G~---------~v~~--d---~~l~~~~~ 347 (472)
||||+++... |....=.-.+.+.+... |.+++++....- .+.--.|. .... + ...+++
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~-~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l-- 77 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNS-ELEISNSDSEELFKKGIDRQSNADDGGVIKKEL-- 77 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTC-CCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHH--
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccC-CCCCCCchHHhhccCCCCccchHHHHHHHHHHH--
Confidence 4688887664 33333334456677766 899988876542 22111010 0000 1 011222
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHH-------HcCCeEEEEchh
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQK-------VAGRIYGAVCSS 391 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 391 (472)
.++|+||+.. +.....-...+..||-+.. -+||+++.++++
T Consensus 78 ~~AD~iI~~s---P~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~ 125 (242)
T 1sqs_A 78 LESDIIIISS---PVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVA 125 (242)
T ss_dssp HHCSEEEEEE---EECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEE
T ss_pred HHCCEEEEEc---cccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeC
Confidence 5789998854 1222233456666776642 246777766665
No 208
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=26.83 E-value=70 Score=29.49 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=50.3
Q ss_pred CCEEEEEeCC---CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 287 MPRVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 287 ~~~V~il~~~---g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
.++|++++.+ .|+..-+.++.+.+.+.||++.+...+.. .-.- ...++.+....+|.||+.+... .
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~--------~~~i~~l~~~~vdgiIi~~~~~--~ 70 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN-EETQ--------MSQIENMINRGVDVLVIIPYNG--Q 70 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTC-HHHH--------HHHHHHHHHTTCSEEEEECSST--T
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHH--------HHHHHHHHHcCCCEEEEeCCCh--h
Confidence 3579999874 57777778888999999999988876543 1000 0012222224678887765421 1
Q ss_pred cccccHHHHHHHHHHHHcCCeEEEEc
Q 012037 364 RLQKSRILKKLLKEQKVAGRIYGAVC 389 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~~~g~~v~aic 389 (472)
.+.+.+++..+.+.+++.+.
T Consensus 71 ------~~~~~~~~~~~~~iPvV~~~ 90 (313)
T 3m9w_A 71 ------VLSNVVKEAKQEGIKVLAYD 90 (313)
T ss_dssp ------SCHHHHHHHHTTTCEEEEES
T ss_pred ------hhHHHHHHHHHCCCeEEEEC
Confidence 11234455555566666554
No 209
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=26.38 E-value=1e+02 Score=29.87 Aligned_cols=91 Identities=15% Similarity=-0.009 Sum_probs=52.5
Q ss_pred CCCEEEEEeCCCCCHHH--HHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchh
Q 012037 286 RMPRVLIPIANGSEEIE--IVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAE 363 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e--~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~ 363 (472)
+.+++.++-+....-.+ .-.+.+.+...+++++++....- .. .....++ .++|.|++..-..
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-~~----------~~~~~~l--~~~d~iiigsP~y--- 318 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-DR----------SEIVKDI--LESGAIALGAPTI--- 318 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-CH----------HHHHHHH--HTCSEEEEECCEE---
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-CH----------HHHHHHH--HHCCEEEEECccc---
Confidence 45788888776443332 33456777777889988876542 10 1112234 5789998865321
Q ss_pred cccccHHHHHHHHHHH---H---cCCeEEEEchhH
Q 012037 364 RLQKSRILKKLLKEQK---V---AGRIYGAVCSSP 392 (472)
Q Consensus 364 ~~~~~~~l~~~L~~~~---~---~g~~v~aic~G~ 392 (472)
.-.-.+.+..||.... . ++|+++.+|++.
T Consensus 319 ~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~g 353 (404)
T 2ohh_A 319 YDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMG 353 (404)
T ss_dssp TTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEEES
T ss_pred cccchHHHHHHHHHhhhccccccCCCEEEEEEecC
Confidence 1112334555555443 3 788888888764
No 210
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=26.09 E-value=99 Score=28.62 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=32.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCC
Q 012037 82 VPPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ 122 (472)
Q Consensus 82 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g 122 (472)
.+++||.|-=-||+....+..+++.|++ +.+|.+++|+..
T Consensus 9 ~~~m~ILlTNDDGi~apGi~aL~~~l~~-~~~V~VVAP~~~ 48 (261)
T 3ty2_A 9 TPKLRLLLSNDDGVYAKGLAILAKTLAD-LGEVDVVAPDRN 48 (261)
T ss_dssp --CCEEEEECSSCTTCHHHHHHHHHHTT-TSEEEEEEESSC
T ss_pred CCCCeEEEEcCCCCCCHHHHHHHHHHHh-cCCEEEEecCCC
Confidence 3446776666779999999999999988 789999999864
No 211
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=25.80 E-value=93 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCC
Q 012037 84 PKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQ 122 (472)
Q Consensus 84 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g 122 (472)
||||.|-=-||+....+..+++.|++.| +|.+++|+..
T Consensus 1 ~M~ILlTNDDGi~apGi~aL~~~l~~~g-~V~VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGYFSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHhcC-CEEEEecCCC
Confidence 3677666678999999999999999988 9999999864
No 212
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=25.43 E-value=46 Score=32.83 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=75.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVRL 162 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~l 162 (472)
..+|+.|+.-+++...-...+.+.|..+|+++.++-..+|++-.+.....-..+ .+.+.....-|.||--|| +..
T Consensus 61 ~~~rvlIVtd~~v~~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~-~l~~~~~~R~d~IIAvGG-Gsv--- 135 (390)
T 3okf_A 61 AKQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMS-FLLEHNYSRDVVVIALGG-GVI--- 135 (390)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHH-HHHHTTCCTTCEEEEEES-HHH---
T ss_pred CCCEEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHH-HHHhcCCCcCcEEEEECC-cHH---
Confidence 357898888888777655667788889999988765544433111110000000 111111113477776676 222
Q ss_pred cCChHHHHHHHHHHhcCCeEEEEchhhHHhhhcCCC-CCCceeecCcchhccCCCCccccCcEEEeCCEEeC
Q 012037 163 RDCEILKKITSKQAEEKRLYGAICAAPAVTLLPWGL-LRRKQITCHPAFTDKLPTFWAVKSNIHVSGEVTTS 233 (472)
Q Consensus 163 ~~~~~~~~~l~~~~~~~k~I~aic~g~~~lLa~aGl-L~g~~~T~~~~~~~~l~~~~~~~~~~v~Dg~iiTa 233 (472)
-++-.|+...|..|.+++.|.+- +|+..+- ..|+.+-.++.... +....+....++.|-.++.+
T Consensus 136 ---~D~ak~~Aa~~~rgip~I~IPTT---lla~vDssvggkt~I~~~~~Kn-~ig~f~~P~~ViiD~~~l~t 200 (390)
T 3okf_A 136 ---GDLVGFAAACYQRGVDFIQIPTT---LLSQVDSSVGGKTAVNHPLGKN-MIGAFYQPKAVVIDTDCLTT 200 (390)
T ss_dssp ---HHHHHHHHHHBTTCCEEEEEECS---HHHHHHTSSSCEEEEEETTEEE-EEEEECCCSEEEEEGGGGGG
T ss_pred ---hhHHHHHHHHhcCCCCEEEeCCC---CccccccCcCCeEEEEcCCCce-EEeeccCCCEEEEcHHHHhh
Confidence 35667777788999999999983 4554221 23444333332111 11111234456677655543
No 213
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=24.96 E-value=95 Score=29.53 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=49.2
Q ss_pred CCEEEEEeCCCCC---H-HHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 287 MPRVLIPIANGSE---E-IEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 287 ~~~V~il~~~g~~---~-~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
|+|++|++=|..- . -.+..+.+.|+.+++++.+...+...... . ...+....++|.|++.||.+
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~-----~-----~~~~~~~~~~d~vvv~GGDG-- 91 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDAT-----L-----EAERAMHENYDVLIAAGGDG-- 91 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHH-----H-----HHHHHTTTTCSEEEEEECHH--
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHH-----H-----HHHHHhhcCCCEEEEEcCch--
Confidence 4578777765432 2 23456788899999888877554320110 0 01111124578888877752
Q ss_pred hcccccHHHHHHHHHH--HHcCCeEEEEchhHH-HHHHc
Q 012037 363 ERLQKSRILKKLLKEQ--KVAGRIYGAVCSSPI-VLHKH 398 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~--~~~g~~v~aic~G~~-lLA~a 398 (472)
-+.+.++.. ...+.+++.|-.|+. .||+.
T Consensus 92 -------Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~ 123 (337)
T 2qv7_A 92 -------TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRA 123 (337)
T ss_dssp -------HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHH
T ss_pred -------HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHH
Confidence 223333333 234556666666653 44443
No 214
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=24.89 E-value=73 Score=25.54 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHH--c
Q 012037 304 VTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKV--A 381 (472)
Q Consensus 304 ~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~--~ 381 (472)
-.+.+.|...|++++++....- ...++ .++|.|++.......... .+..+.+|+++... +
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~---------------~~~~l--~~~d~iiig~pty~~g~~-p~~~~~~fl~~l~~~l~ 78 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV---------------NIDEL--LNEDILILGCSAMTDEVL-EESEFEPFIEEISTKIS 78 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC---------------CHHHH--TTCSEEEEEECCBTTTBC-CTTTHHHHHHHHGGGCT
T ss_pred HHHHHHHHHCCCeEEEEEhhhC---------------CHHHH--hhCCEEEEEcCccCCCCC-ChHHHHHHHHHHHhhcC
Confidence 4456777778888887766542 12344 678988886432111111 11146667666553 7
Q ss_pred CCeEEEEchh
Q 012037 382 GRIYGAVCSS 391 (472)
Q Consensus 382 g~~v~aic~G 391 (472)
++.++.++++
T Consensus 79 ~k~~~~f~t~ 88 (138)
T 5nul_A 79 GKKVALFGSY 88 (138)
T ss_dssp TCEEEEEEEE
T ss_pred CCEEEEEEec
Confidence 8888888864
No 215
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=24.69 E-value=1.2e+02 Score=27.99 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=22.6
Q ss_pred CcccEEEEcCCCcchhcccccHHHHHHHHHHHHc--CCeEEEEchhH
Q 012037 348 SVYDLIILPGGVAGAERLQKSRILKKLLKEQKVA--GRIYGAVCSSP 392 (472)
Q Consensus 348 ~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~--g~~v~aic~G~ 392 (472)
.++|++|+.||.+ -++...+.+... +.++.+|-.|.
T Consensus 34 ~~~D~vv~lGGDG---------T~l~aa~~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 34 VEPEIVISIGGDG---------TFLSAFHQYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp SSCSEEEEEESHH---------HHHHHHHHTGGGTTTCEEEEEESSS
T ss_pred CCCCEEEEEcCcH---------HHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 4578888888852 334444544443 67888886664
No 216
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=24.59 E-value=4.2e+02 Score=24.73 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCcce---ecCCCcEEeecCCccccCCCcccEEEEcCCC
Q 012037 286 RMPRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQI---VASQGVKIIADKSISDAAESVYDLIILPGGV 359 (472)
Q Consensus 286 ~~~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v---~s~~G~~v~~d~~l~~~~~~~~D~livpGG~ 359 (472)
.++||.|+-. -..-+..+...|.+.|++|...-.....+. ....|+.+......+++...++|.|++..|.
T Consensus 3 ~~~~i~~iGi---Gg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 3 AMKHIHIIGI---GGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp CCCEEEEESC---CSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred CCcEEEEEEE---CHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 4678888744 445566777899999999976543322111 1235888775433333310258999987665
No 217
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.27 E-value=88 Score=28.47 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=47.2
Q ss_pred CCCCcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037 81 AVPPKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 81 ~~~~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~ 157 (472)
..++++|++++ +- |...-+.++.+.+++.||++.+...... . . ... .+.......+|+||+.+..
T Consensus 9 ~~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~-~-----~~~---~~~~l~~~~vdgiIi~~~~- 76 (289)
T 3k9c_A 9 QASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPS-R-A-----EKV---AVQALMRERCEAAILLGTR- 76 (289)
T ss_dssp ----CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTT-B-C-----HHH---HHHHHTTTTEEEEEEETCC-
T ss_pred cCCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCC-H-H-----HHH---HHHHHHhCCCCEEEEECCC-
Confidence 34568899999 53 2233345566677778999988876642 1 0 011 1111222368999987652
Q ss_pred ccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 158 GSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 158 ~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.+. ++++...+ +.++..+..
T Consensus 77 ------~~~---~~~~~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 77 ------FDT---DELGALAD-RVPALVVAR 96 (289)
T ss_dssp ------CCH---HHHHHHHT-TSCEEEESS
T ss_pred ------CCH---HHHHHHHc-CCCEEEEcC
Confidence 112 34444444 888888765
No 218
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=23.78 E-value=95 Score=28.38 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhccc------cc----HHH
Q 012037 302 EIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQ------KS----RIL 371 (472)
Q Consensus 302 e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~------~~----~~l 371 (472)
+...+.+.|+.++++++++..+.. .. .+ +...+++ .+||+||+.+... ..+. .+ +..
T Consensus 41 ~~~~l~~aL~~~~~~v~~~~~~~~--~~-----~f--p~~~~~L--~~yDvIIl~~~~~--~~l~~~~~~~~~~~~~~~~ 107 (256)
T 2gk3_A 41 GATWLLECLRKGGVDIDYMPAHTV--QI-----AF--PESIDEL--NRYDVIVISDIGS--NTFLLQNETFYQLKIKPNA 107 (256)
T ss_dssp SCHHHHHHHHHTTCEEEEECHHHH--HH-----CC--CCSHHHH--HTCSEEEEESCCH--HHHHSCHHHHTTCCCCCCH
T ss_pred cHHHHHHHHHhcCceEEEEecccc--hh-----hC--CcChhHH--hcCCEEEEeCCch--hhcccccccccccccChHH
Confidence 445677888888999998854310 00 00 0112334 6899999987431 1111 11 456
Q ss_pred HHHHHHHHHcCCeEEEEc
Q 012037 372 KKLLKEQKVAGRIYGAVC 389 (472)
Q Consensus 372 ~~~L~~~~~~g~~v~aic 389 (472)
.+.|+++.++|.-+..+.
T Consensus 108 ~~~l~~~V~~GGgll~ig 125 (256)
T 2gk3_A 108 LESIKEYVKNGGGLLMIG 125 (256)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCEEEEEC
Confidence 788999988898888884
No 219
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=23.66 E-value=1.5e+02 Score=26.75 Aligned_cols=87 Identities=15% Similarity=0.032 Sum_probs=48.6
Q ss_pred CCCEEEEEeCCCCC---HHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIANGSE---EIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~g~~---~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
+.++|++++.+-.+ ..-+.++.+.+.+.||++.+...+.. .-.. ...++.+....+|.||+.+..
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~--------~~~~~~l~~~~vdgiIi~~~~--- 71 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN-DQTQ--------VSQIQTLIAQKPDAIIEQLGN--- 71 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHH--------HHHHHHHHHHCCSEEEEESSC---
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCC-HHHH--------HHHHHHHHHcCCCEEEEeCCC---
Confidence 45789999886333 33456777888888999988866543 1000 001222212457777775432
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEc
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVC 389 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic 389 (472)
.....+.+++..+.+.+++.+.
T Consensus 72 -----~~~~~~~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 72 -----LDVLNPWLQKINDAGIPLFTVD 93 (291)
T ss_dssp -----HHHHHHHHHHHHHTTCCEEEES
T ss_pred -----hhhhHHHHHHHHHCCCcEEEec
Confidence 1123344555556666666554
No 220
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.51 E-value=68 Score=29.24 Aligned_cols=91 Identities=8% Similarity=-0.102 Sum_probs=52.4
Q ss_pred CCCcEEEEEeCCC----CcHHHHHHHHHHHHhC-CCEEEEEeeCCC-cceeccCCceeeeCCCcCCCCCCcccEEEEcCC
Q 012037 82 VPPKKVLVPVGFG----TEEMEAVIIVDVLRRA-GAQVTMASVEPQ-LEVEASSGTRLVADTSISNCSHQVFDLIALPGG 155 (472)
Q Consensus 82 ~~~~kV~ill~~g----~~~~e~~~~~~~l~~a-g~~v~~vs~~~g-~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG 155 (472)
.++++|++++.+. |...-+.++.+.+++. ||.+.+...... ..... .. ..++......+|+||+.+.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~----~~---~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNS----FV---ATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHH----HH---HHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHH----HH---HHHHHHHhcCCCEEEECCC
Confidence 3568999998654 4455556677777888 888887654211 00000 00 0111122236899999764
Q ss_pred ccccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 156 MPGSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 156 ~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
. .+...+++++..+.+.++..+..
T Consensus 79 ~--------~~~~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 79 V--------PQYTKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp S--------GGGTHHHHHHHHHHTCCEEEESS
T ss_pred C--------hHHHHHHHHHHHHCCCeEEEEeC
Confidence 2 12234456666677899888876
No 221
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=23.44 E-value=57 Score=29.65 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=49.8
Q ss_pred CCCCEEEEEeCCC---CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcc
Q 012037 285 DRMPRVLIPIANG---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAG 361 (472)
Q Consensus 285 ~~~~~V~il~~~g---~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 361 (472)
.+..+|++++.+- |...-+.++.+.+.+.||++.++..+.. .-.. ...++.+....+|.||+.+...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~--------~~~~~~l~~~~vdgiI~~~~~~- 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RISE--------REQILEFVHLKVDAIFITTLDD- 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHH--------HHHHHHHHHTTCSEEEEECSCT-
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHH--------HHHHHHHHHcCCCEEEEecCCh-
Confidence 3567899998763 3334456677778888999988766543 1000 0112222225689998865421
Q ss_pred hhcccccHHHHHHHHHHHHcCCeEEEEc
Q 012037 362 AERLQKSRILKKLLKEQKVAGRIYGAVC 389 (472)
Q Consensus 362 ~~~~~~~~~l~~~L~~~~~~g~~v~aic 389 (472)
....+.+++..+.+.+++.+.
T Consensus 76 -------~~~~~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 76 -------VYIGSAIEEAKKAGIPVFAID 96 (293)
T ss_dssp -------TTTHHHHHHHHHTTCCEEEES
T ss_pred -------HHHHHHHHHHHHcCCCEEEec
Confidence 112244555666677777764
No 222
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=22.84 E-value=4.7e+02 Score=24.45 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=63.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEEecCCccee----------cCCCcEEeecCCccccCCCcccEEE--E
Q 012037 288 PRVLIPIANGSEEIEIVTIVDILRRAKVDVVVASVERSTQIV----------ASQGVKIIADKSISDAAESVYDLII--L 355 (472)
Q Consensus 288 ~~V~il~~~g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~----------s~~G~~v~~d~~l~~~~~~~~D~li--v 355 (472)
.+|+|++-+|-+-.|-..+.-.|...||+|+++-.... ... ...|..+.... .++...++|+|| +
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~--~~l~~~~~dlIIDAL 209 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFV-KMLESITNELSLFSKTQGQQVSSL--KDLPTSPVDLVINCL 209 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCCCS-SCCHHHHHHHHHHHTSSCEEESCS--TTSCSSCCSEEEEEC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEecCC-CCCHHHHHHHHHHHHcCCccccch--hhhccCCCCEEEECC
Confidence 58999999999999999999999999999998866432 111 12344443211 111102467664 3
Q ss_pred cCCCcchhcccccHHHHHHHHHHHHcCCeEEEEchhH
Q 012037 356 PGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCSSP 392 (472)
Q Consensus 356 pGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~ 392 (472)
| .+....+.....+.++|+..++.+.+|.||--=+
T Consensus 210 -G-~G~~~~l~~~~~~~~lI~~iN~~~~~VvAVDiPS 244 (306)
T 3d3j_A 210 -D-CPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPV 244 (306)
T ss_dssp -C-CTTCGGGGGCHHHHHHHHHHHHSCCCEEEESCCC
T ss_pred -C-CCCCCccCcchHHHHHHHHHHhcCCCEEEEECCC
Confidence 3 2112222212567777777778888999987433
No 223
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=22.83 E-value=1.2e+02 Score=25.68 Aligned_cols=92 Identities=20% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCCEEEEEeCCCCCH---HHHHHHHHHHHhCC-C---eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcC-
Q 012037 286 RMPRVLIPIANGSEE---IEIVTIVDILRRAK-V---DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPG- 357 (472)
Q Consensus 286 ~~~~V~il~~~g~~~---~e~~~~~d~l~~a~-~---~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpG- 357 (472)
...||+|+...--.. .=+.+..+.|.+.| . +++++..-|. .-+.+....... . .+||+++..|
T Consensus 11 ~~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGa------fEiP~aa~~la~-~--~~yDavIaLG~ 81 (156)
T 3nq4_A 11 PDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGA------YELPLATEALAK-S--GKYDAVVALGT 81 (156)
T ss_dssp TTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESST------TTHHHHHHHHHH-H--CSCSEEEEEEE
T ss_pred CCCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcH------HHHHHHHHHHHh-c--CCCCEEEEeee
Confidence 357899998764433 56678899999998 4 6888877763 112222221122 1 5799998776
Q ss_pred ---CCcchhcccccHHHHHHHHHHHHcCCeEE
Q 012037 358 ---GVAGAERLQKSRILKKLLKEQKVAGRIYG 386 (472)
Q Consensus 358 ---G~~~~~~~~~~~~l~~~L~~~~~~g~~v~ 386 (472)
|......+..+.-...+.+-..+.+.+|+
T Consensus 82 VIrG~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~ 113 (156)
T 3nq4_A 82 VIRGGTAHFEYVAGGASNGLASVAQDSGVPVA 113 (156)
T ss_dssp EECCSSTHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred eecCCchHHHHHHHHHHHHHHHHHhccCCCEE
Confidence 32223334445555556666667788863
No 224
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=22.70 E-value=35 Score=29.15 Aligned_cols=92 Identities=12% Similarity=-0.030 Sum_probs=54.8
Q ss_pred CcEEEEEeCCCCcH---HHHHHHHHHHHhCCC---EEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCc-
Q 012037 84 PKKVLVPVGFGTEE---MEAVIIVDVLRRAGA---QVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGM- 156 (472)
Q Consensus 84 ~~kV~ill~~g~~~---~e~~~~~~~l~~ag~---~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~- 156 (472)
+.||+|+...--.. .-+.+..+.|.+.|. +++++..-+- . -+.+.+..... ...||+|+.-|--
T Consensus 10 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGa--f----EiP~aa~~la~---~~~yDavIaLG~VI 80 (158)
T 1di0_A 10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGA--Y----EIPLHAKTLAR---TGRYAAIVGAAFVI 80 (158)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG--G----GHHHHHHHHHH---TSCCSEEEEEEECC
T ss_pred CCEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH--H----HHHHHHHHHHh---cCCCCEEEEeeccc
Confidence 67999999875443 566778888988874 4677766532 1 12222221111 2369999987632
Q ss_pred ---cccccccCChHHHHHHHHHHhcCCeEEE
Q 012037 157 ---PGSVRLRDCEILKKITSKQAEEKRLYGA 184 (472)
Q Consensus 157 ---~~~~~l~~~~~~~~~l~~~~~~~k~I~a 184 (472)
.....+-.+.......+-+.+.++||+-
T Consensus 81 rG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~ 111 (158)
T 1di0_A 81 DGGIYDHDFVATAVINGMMQVQLETEVPVLS 111 (158)
T ss_dssp CCSSBCCHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 1122233445556666667778888765
No 225
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=22.48 E-value=1e+02 Score=29.75 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=50.9
Q ss_pred CcEEEEEeCCCC--cHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 84 PKKVLVPVGFGT--EEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 84 ~~kV~ill~~g~--~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
.+||.++-+... ...-...+.+.+.+.|++++++....- .. +....++. ++|+|++..- ...
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-~~----------~~~~~~l~--~~d~iiigsP---~y~ 319 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-DR----------SEIVKDIL--ESGAIALGAP---TIY 319 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-CH----------HHHHHHHH--TCSEEEEECC---EET
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-CH----------HHHHHHHH--HCCEEEEECc---ccc
Confidence 467777766533 233333456667777888888876531 11 00011222 6899998542 111
Q ss_pred ccCChHHHHHHHHHHh------cCCeEEEEchhhH
Q 012037 162 LRDCEILKKITSKQAE------EKRLYGAICAAPA 190 (472)
Q Consensus 162 l~~~~~~~~~l~~~~~------~~k~I~aic~g~~ 190 (472)
-...+.+..|+.+..+ ++|+++.+|+++.
T Consensus 320 ~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~g~ 354 (404)
T 2ohh_A 320 DEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGG 354 (404)
T ss_dssp TEECTHHHHHHHHHHHHCGGGTCCEEEEEEEEESS
T ss_pred ccchHHHHHHHHHhhhccccccCCCEEEEEEecCC
Confidence 1223456666665543 6889888887543
No 226
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.34 E-value=1.1e+02 Score=27.57 Aligned_cols=90 Identities=13% Similarity=-0.012 Sum_probs=53.1
Q ss_pred CcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
.++|++++.+- |...-+.++.+.+++.||++.+...... .-. .. ..++......+|+||+.+....
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~-----~~---~~~~~l~~~~vdgiIi~~~~~~-- 83 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNN-PDN-----ER---RGLENLLSQHIDGLIVEPTKSA-- 83 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTC-HHH-----HH---HHHHHHHHTCCSEEEECCSSTT--
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-hHH-----HH---HHHHHHHHCCCCEEEEeccccc--
Confidence 37899998753 4455566777888888999988875532 100 00 0111111236899999765211
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
. .....+.+++..+.+.++..+..
T Consensus 84 -~--~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 84 -L--QTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp -S--CCTTHHHHHHHHHTTCCEEEESS
T ss_pred -c--cCCcHHHHHHHHhcCCCEEEEec
Confidence 0 01223455666677899888876
No 227
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=22.26 E-value=3e+02 Score=25.81 Aligned_cols=90 Identities=9% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEEeeCCCccee---ccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVE---ASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~---~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
.++||.|+=.- ......+...|.+.|++|...-.....+.. ...|..+......++....++|.|++..|.+
T Consensus 3 ~~~~i~~iGiG---g~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~-- 77 (326)
T 3eag_A 3 AMKHIHIIGIG---GTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAK-- 77 (326)
T ss_dssp CCCEEEEESCC---SHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCC--
T ss_pred CCcEEEEEEEC---HHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcC--
Confidence 46788777333 345556678899999999876554321111 1346666543332332102589999976631
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEE
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGA 184 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~a 184 (472)
.+++. ++++.++|.+|.+
T Consensus 78 ---~~~p~----~~~a~~~gi~v~~ 95 (326)
T 3eag_A 78 ---RGMDV----VEAILNLGLPYIS 95 (326)
T ss_dssp ---TTCHH----HHHHHHTTCCEEE
T ss_pred ---CCCHH----HHHHHHcCCcEEe
Confidence 13343 3345556666655
No 228
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=22.21 E-value=99 Score=26.23 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCc---HHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCC--CCCCcccEEEEcCCc---
Q 012037 85 KKVLVPVGFGTE---EMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISN--CSHQVFDLIALPGGM--- 156 (472)
Q Consensus 85 ~kV~ill~~g~~---~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~--~~~~~~D~vivpGG~--- 156 (472)
.||+|+...-.+ ..-+.+..+.|.+.|.+++++..-+- .. +.+.+...... .....||+|+..|--
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGa--fE----iP~aa~~la~~~~~~~~~yDavIaLG~VIrG 86 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGA--LE----IPATISFALDGADNGGTEYDGFVALGTVIRG 86 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSG--GG----HHHHHHHHHHHHHTTCCCCSEEEEEEEEECC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--HH----HHHHHHHHHhhccccCCCCCEEEEeeeeecC
Confidence 789999987444 36677889999999988888877632 11 11111111111 011369999876631
Q ss_pred -cccccccCChHHHHHHHHHHhcCCeEEE
Q 012037 157 -PGSVRLRDCEILKKITSKQAEEKRLYGA 184 (472)
Q Consensus 157 -~~~~~l~~~~~~~~~l~~~~~~~k~I~a 184 (472)
......-.+.......+-+.+.++||+-
T Consensus 87 ~T~Hfd~Va~~v~~gl~~vsl~~~vPV~~ 115 (157)
T 2i0f_A 87 ETYHFDIVSNESCRALTDLSVEESIAIGN 115 (157)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 1222233445556666667778888654
No 229
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.16 E-value=73 Score=28.91 Aligned_cols=87 Identities=8% Similarity=-0.068 Sum_probs=47.8
Q ss_pred CcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCccccc
Q 012037 84 PKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSV 160 (472)
Q Consensus 84 ~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~ 160 (472)
+++|++++.+- |...-+.++.+.+++.||++.+...... +-. ... .++......+|+||+.+.. .
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~-----~~~---~~~~l~~~~vdgiI~~~~~--~- 69 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQND-TAK-----ESA---HFDAIIAAGYDAIIFNPTD--A- 69 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHH-----HHH---HHHHHHHTTCSEEEECCSC--T-
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCC-HHH-----HHH---HHHHHHHcCCCEEEEecCC--h-
Confidence 46899998652 3344455667777788999887655422 100 000 0111112358999986541 1
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 161 RLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 161 ~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
....+.+++..+.+.++..+..
T Consensus 70 -----~~~~~~~~~~~~~~iPvV~~~~ 91 (290)
T 2fn9_A 70 -----DGSIANVKRAKEAGIPVFCVDR 91 (290)
T ss_dssp -----TTTHHHHHHHHHTTCCEEEESS
T ss_pred -----HHHHHHHHHHHHCCCeEEEEec
Confidence 1122344555567888887765
No 230
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=22.15 E-value=2.8e+02 Score=21.59 Aligned_cols=80 Identities=18% Similarity=-0.014 Sum_probs=47.0
Q ss_pred CCcEEEEEeCCCCcHHHHHH-HHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccccc
Q 012037 83 PPKKVLVPVGFGTEEMEAVI-IVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGSVR 161 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e~~~-~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~~~ 161 (472)
+.+||.+++..|.+..-+.. +.+...+.|.++++.+..-+ . +.+. ..+||+|++..- ..
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~-~--------------~~~~-~~~~DvvLLgPQ---V~- 64 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYG-A--------------HYDI-MGVYDLIILAPQ---VR- 64 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETT-S--------------CTTT-GGGCSEEEECGG---GG-
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchH-H--------------HHhh-ccCCCEEEEChH---HH-
Confidence 46799999999975544433 33444455888888764322 1 1111 136999998221 11
Q ss_pred ccCChHHHHHHHHHH-hcCCeEEEEch
Q 012037 162 LRDCEILKKITSKQA-EEKRLYGAICA 187 (472)
Q Consensus 162 l~~~~~~~~~l~~~~-~~~k~I~aic~ 187 (472)
...+-+++.+ +++++|..|-.
T Consensus 65 -----y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 65 -----SYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp -----GGHHHHHHHHTTTTCEEEECCH
T ss_pred -----HHHHHHHHHhhhcCCcEEEeCH
Confidence 1223344444 56899999887
No 231
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.98 E-value=88 Score=28.98 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=53.3
Q ss_pred CCCEEEEEeCC---CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcch
Q 012037 286 RMPRVLIPIAN---GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGA 362 (472)
Q Consensus 286 ~~~~V~il~~~---g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~ 362 (472)
..++|++++.+ .|...-+.++.+.++..||++.+...+.. .-.- ...++.+....+|.||+.+...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~--------~~~i~~~~~~~vdgiIi~~~~~-- 70 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDD-IPNQ--------LSQIENMVTKGVKVLVIASIDG-- 70 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHH--------HHHHHHHHHHTCSEEEECCSSG--
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCC-HHHH--------HHHHHHHHHcCCCEEEEEcCCc--
Confidence 35789999885 35555566778888889999988875543 1000 0112222224689999876431
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEEEch
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
....+.+++..+.|.+++.+..
T Consensus 71 ------~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 71 ------TTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp ------GGGHHHHHHHHHTTCEEEEESS
T ss_pred ------hhHHHHHHHHHHCCCCEEEECC
Confidence 1223455666677888877653
No 232
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.76 E-value=1.7e+02 Score=27.37 Aligned_cols=87 Identities=10% Similarity=-0.119 Sum_probs=50.5
Q ss_pred CCCCcEEEEEeCC---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037 81 AVPPKKVLVPVGF---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 81 ~~~~~kV~ill~~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~ 157 (472)
..++++|++++.+ .|...-+.++.+.+++.||.+.+...+.. +-.. . ..++......+|+||+.+..
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~-----~---~~i~~l~~~~vdGiIi~~~~- 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYL-PEKE-----E---KVLYEMLSWRPSGVIIAGLE- 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTC-HHHH-----H---HHHHHHHTTCCSEEEEECSC-
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHHH-----H---HHHHHHHhCCCCEEEEECCC-
Confidence 3446799999865 34455566677777788999977665432 1000 0 01111112368999986541
Q ss_pred ccccccCChHHHHHHHHHHhcCCeEEEEc
Q 012037 158 GSVRLRDCEILKKITSKQAEEKRLYGAIC 186 (472)
Q Consensus 158 ~~~~l~~~~~~~~~l~~~~~~~k~I~aic 186 (472)
.+. +.++...+.+.++..+.
T Consensus 135 ------~~~---~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 135 ------HSE---AARAMLDAAGIPVVEIM 154 (344)
T ss_dssp ------CCH---HHHHHHHHCSSCEEEEE
T ss_pred ------CCH---HHHHHHHhCCCCEEEEe
Confidence 122 23444556788888774
No 233
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.73 E-value=96 Score=28.30 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=50.4
Q ss_pred CCCcEEEEEeC----C---CCcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcC
Q 012037 82 VPPKKVLVPVG----F---GTEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPG 154 (472)
Q Consensus 82 ~~~~kV~ill~----~---g~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpG 154 (472)
.++++|++++. + .|...-+.++.+.+++.||.+.+...+.. . .... .++......+|+||+.+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~------~~~~---~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPG-E------KYQS---LIHLVETRRVDALIVAH 73 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTT-C------CCHH---HHHHHHHTCCSEEEECS
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCCh-h------hHHH---HHHHHHcCCCCEEEEeC
Confidence 34678999996 2 23444556677777888999988875421 0 0000 01111122589999976
Q ss_pred CccccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 155 GMPGSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 155 G~~~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
... .+ +.++...+.+.++..+..
T Consensus 74 ~~~------~~----~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 74 TQP------ED----FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp CCS------SC----HHHHHHHHTTCCEEEESC
T ss_pred CCC------Ch----HHHHHHHhCCCCEEEECC
Confidence 521 11 345555667888888766
No 234
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=21.41 E-value=46 Score=28.31 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=50.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCC--eEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCc--ch
Q 012037 287 MPRVLIPIANGSEEIEIVTIVDILRRAKV--DVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVA--GA 362 (472)
Q Consensus 287 ~~~V~il~~~g~~~~e~~~~~d~l~~a~~--~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~--~~ 362 (472)
+.||+|+...--..-=+.+..+.|.+.|. ++.++..-|. .-+.+.+. .+.+. .+||+||..|--+ ..
T Consensus 2 ~~ri~IV~arfn~~~Ll~gA~~~L~~~G~~~~i~~~~VPGa------fEiP~aak-~la~~--~~yDavIaLG~VG~T~H 72 (156)
T 2b99_A 2 TKKVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPGI------KDLPVACK-KLLEE--EGCDIVMALGMPGKAEK 72 (156)
T ss_dssp CCEEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESSG------GGHHHHHH-HHHHH--SCCSEEEEEECCCSSHH
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHHcCCCCeEEEEECCcH------HHHHHHHH-HHHhc--CCCCEEEEecccCCcch
Confidence 46888887653323334788899988874 4444555542 11112122 12221 5799999777432 22
Q ss_pred hcccccHHHHHHHHHHHHcCCeEEE
Q 012037 363 ERLQKSRILKKLLKEQKVAGRIYGA 387 (472)
Q Consensus 363 ~~~~~~~~l~~~L~~~~~~g~~v~a 387 (472)
..+..+.-...+.+-..+.+.+|+.
T Consensus 73 fd~Va~~vs~Gl~~v~L~~~vPV~~ 97 (156)
T 2b99_A 73 DKVCAHEASLGLMLAQLMTNKHIIE 97 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHHHHHHHHHhhhCCCEEE
Confidence 3334445555566656677887743
No 235
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=21.34 E-value=3e+02 Score=25.08 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=25.9
Q ss_pred CcEEEEEeCCC----CcHHHHHHHHHHHHhCCCEEEEEeeCC
Q 012037 84 PKKVLVPVGFG----TEEMEAVIIVDVLRRAGAQVTMASVEP 121 (472)
Q Consensus 84 ~~kV~ill~~g----~~~~e~~~~~~~l~~ag~~v~~vs~~~ 121 (472)
|+||+++...- ++..=...+.+.+++.|.+|+++....
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~ 43 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYA 43 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccc
Confidence 56898888753 233333445666777899999988764
No 236
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=21.32 E-value=1.2e+02 Score=25.45 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCCcHHH--HHHHHHHHHhCCCEEEEEeeCC
Q 012037 83 PPKKVLVPVGFGTEEME--AVIIVDVLRRAGAQVTMASVEP 121 (472)
Q Consensus 83 ~~~kV~ill~~g~~~~e--~~~~~~~l~~ag~~v~~vs~~~ 121 (472)
..+|+.||+.||....+ +....+.++..|..+..++...
T Consensus 121 ~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 121 HVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp TSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC-
T ss_pred CCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCC
Confidence 46799999999976655 7778888888999998888754
No 237
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=21.04 E-value=71 Score=29.00 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=36.3
Q ss_pred CCEEEEEeCCC---CCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCC
Q 012037 287 MPRVLIPIANG---SEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGG 358 (472)
Q Consensus 287 ~~~V~il~~~g---~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG 358 (472)
..+|++++.+- |...-+.++.+.+.+.||++.+...+.. +-.. ...++.+....+|.||+.+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~--------~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQND-TAKE--------SAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHH--------HHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCC-HHHH--------HHHHHHHHHcCCCEEEEecC
Confidence 46799998753 3334455667778888999887655432 1000 00122222256899998754
No 238
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.95 E-value=46 Score=30.72 Aligned_cols=106 Identities=9% Similarity=-0.113 Sum_probs=0.0
Q ss_pred hhhhccccccCCcchhhhcccccccccCCCCEEEEEeCC--------CCCHHHHHHHHHHHHhCCCeEEEEEecCCccee
Q 012037 258 EIGELLLMHNADNSLKKEEFNEVEWFFDRMPRVLIPIAN--------GSEEIEIVTIVDILRRAKVDVVVASVERSTQIV 329 (472)
Q Consensus 258 ~va~~l~~~~~~~~~~~~~~n~~~~~~~~~~~V~il~~~--------g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~ 329 (472)
++++.|-|.++...+ ..+..+..+|++++.+ .|...=+.++.+.+.+.||++.+...+..
T Consensus 1 ~aa~elgY~pn~~Ar--------~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---- 68 (305)
T 3huu_A 1 MSLSKLGYIPNQAAR--------TLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENS---- 68 (305)
T ss_dssp ----------------------------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSH----
T ss_pred CchHHhCCCcCHHHH--------HhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCC----
Q ss_pred cCCCcEEeecCCccccCCCcccEEEEcCCCcchhcccccHHHHHHHHHHHHcCCeEEEEch
Q 012037 330 ASQGVKIIADKSISDAAESVYDLIILPGGVAGAERLQKSRILKKLLKEQKVAGRIYGAVCS 390 (472)
Q Consensus 330 s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~ 390 (472)
.-.....++.+.....|.||+.+.. .+. +.++...+.+.+++.+..
T Consensus 69 -----~~~~~~~~~~l~~~~vdgiIi~~~~-------~~~---~~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 69 -----GDLYHEVKTMIQSKSVDGFILLYSL-------KDD---PIEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp -----HHHHHHHHHHHHTTCCSEEEESSCB-------TTC---HHHHHHHHTTCCEEEESC
T ss_pred -----hHHHHHHHHHHHhCCCCEEEEeCCc-------CCc---HHHHHHHHcCCCEEEECC
No 239
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.69 E-value=1.3e+02 Score=27.42 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-CCCHHHHHHHHHHHHhCCCeEEEEEecCCcceecCCCcEEeecCCccccCCCcccEEEEcCCCcchhc
Q 012037 286 RMPRVLIPIAN-GSEEIEIVTIVDILRRAKVDVVVASVERSTQIVASQGVKIIADKSISDAAESVYDLIILPGGVAGAER 364 (472)
Q Consensus 286 ~~~~V~il~~~-g~~~~e~~~~~d~l~~a~~~v~~vs~~~~~~v~s~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~ 364 (472)
..++|.+...+ ...+.....+..+|+..||+|..++.+- +++.-.+.+...++|+|.+-+... ..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~v------------p~e~l~~~~~~~~~d~V~lS~l~~--~~ 187 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDV------------PAEEVLAAVQKEKPIMLTGTALMT--TT 187 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEEC------------CSHHHHHHHHHHCCSEEEEECCCT--TT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC------------CHHHHHHHHHHcCCCEEEEEeecc--CC
Confidence 45677777776 5789999999999999999999887642 222222333335789998876542 22
Q ss_pred ccccHHHHHHHHHHHHcC
Q 012037 365 LQKSRILKKLLKEQKVAG 382 (472)
Q Consensus 365 ~~~~~~l~~~L~~~~~~g 382 (472)
.+.+.+.++...+.+
T Consensus 188 ---~~~~~~~i~~l~~~~ 202 (258)
T 2i2x_B 188 ---MYAFKEVNDMLLENG 202 (258)
T ss_dssp ---TTHHHHHHHHHHTTT
T ss_pred ---HHHHHHHHHHHHhcC
Confidence 234445555554444
No 240
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.67 E-value=1.1e+02 Score=27.44 Aligned_cols=87 Identities=11% Similarity=-0.033 Sum_probs=52.1
Q ss_pred CCCCcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcc
Q 012037 81 AVPPKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMP 157 (472)
Q Consensus 81 ~~~~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~ 157 (472)
+.++++|++++.+- |...-+.++.+.+++.||++.+...... .-. .. ..+.......+|+||+.+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~-----~~---~~~~~l~~~~vdgiIi~~~~- 73 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANAD-IER-----EK---TLLRAIGSRGFDGLILQSFS- 73 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTC-HHH-----HH---HHHHHHHTTTCSEEEEESSC-
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHH-----HH---HHHHHHHhCCCCEEEEecCC-
Confidence 34568999999763 3344455666777778999988776532 100 00 01111112368999997652
Q ss_pred ccccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 158 GSVRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 158 ~~~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
. .+.++...+.+.++..+..
T Consensus 74 -------~---~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 74 -------N---PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp -------C---HHHHHHHHTTSSCEEEESC
T ss_pred -------c---HHHHHHHHHCCCCEEEEec
Confidence 1 3455666677888888865
No 241
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=20.61 E-value=79 Score=28.34 Aligned_cols=85 Identities=20% Similarity=0.177 Sum_probs=49.6
Q ss_pred CCCCcEEEEEeCCC--------CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEE
Q 012037 81 AVPPKKVLVPVGFG--------TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIAL 152 (472)
Q Consensus 81 ~~~~~kV~ill~~g--------~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~viv 152 (472)
+..|+||.|+...- ++..=+..+.+.+++.|.+++++....+ ...+...+.+. ..|.||+
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~----------~Dv~~~~~~l~--~aD~iv~ 89 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQG----------YDIESEIENYL--WADTIIY 89 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGC----------CCHHHHHHHHH--HCSEEEE
T ss_pred cccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCc----------cCHHHHHHHHH--hCCEEEE
Confidence 44578899988653 1222233456667778999999887632 11111122222 6888887
Q ss_pred cCCccccccccCChHHHHHHHHHHhcCC
Q 012037 153 PGGMPGSVRLRDCEILKKITSKQAEEKR 180 (472)
Q Consensus 153 pGG~~~~~~l~~~~~~~~~l~~~~~~~k 180 (472)
.- ......-...+..|+-+.+..|.
T Consensus 90 ~~---P~y~~~~p~~lK~~iD~v~~~g~ 114 (218)
T 3rpe_A 90 QM---PAWWMGEPWILKKYIDEVFTDGH 114 (218)
T ss_dssp EE---ECBTTBCCHHHHHHHHHHHHHTB
T ss_pred EC---ChHhccCCHHHHHHHHHHHhcCc
Confidence 31 12223345778899999887763
No 242
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=20.46 E-value=73 Score=29.09 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCC---CcHHHHHHHHHHHHhCCCEEEEEeeCCCcceeccCCceeeeCCCcCCCCCCcccEEEEcCCcccc
Q 012037 83 PPKKVLVPVGFG---TEEMEAVIIVDVLRRAGAQVTMASVEPQLEVEASSGTRLVADTSISNCSHQVFDLIALPGGMPGS 159 (472)
Q Consensus 83 ~~~kV~ill~~g---~~~~e~~~~~~~l~~ag~~v~~vs~~~g~~v~~~~G~~v~~d~~~~~~~~~~~D~vivpGG~~~~ 159 (472)
.+++|++++.+. |...-+.++.+.+++.|+++.++....+.+-. ... .+.......+|++|+.+..
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-----~~~---~~~~l~~~~vdgiii~~~~--- 71 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQ-----QVK---IIEDLIARKVDAITIVPND--- 71 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHH-----HHH---HHHHHHHTTCSEEEECCSC---
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHH-----HHH---HHHHHHHcCCCEEEEecCC---
Confidence 367899998653 33334456666777789888765433221100 000 0111111258999885531
Q ss_pred ccccCChHHHHHHHHHHhcCCeEEEEch
Q 012037 160 VRLRDCEILKKITSKQAEEKRLYGAICA 187 (472)
Q Consensus 160 ~~l~~~~~~~~~l~~~~~~~k~I~aic~ 187 (472)
.......+++..+.+.++..+..
T Consensus 72 -----~~~~~~~~~~~~~~~ipvV~~~~ 94 (303)
T 3d02_A 72 -----ANVLEPVFKKARDAGIVVLTNES 94 (303)
T ss_dssp -----HHHHHHHHHHHHHTTCEEEEESC
T ss_pred -----hHHHHHHHHHHHHCCCeEEEEec
Confidence 12344566767778889888765
Done!