Query 012038
Match_columns 472
No_of_seqs 330 out of 2230
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 20:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1a_A Integrin alpha-IIB; sin 17.8 68 0.0023 22.8 2.1 16 453-468 4-19 (42)
2 3iyz_A Aquaporin-4; water tran 14.5 9E+02 0.031 24.2 10.9 129 147-301 140-268 (340)
3 2knc_A Integrin alpha-IIB; tra 12.1 1.1E+02 0.0036 23.0 2.0 17 452-468 5-21 (54)
4 2l8s_A Integrin alpha-1; trans 8.5 1.5E+02 0.0052 22.2 1.7 15 454-468 4-18 (54)
5 3tj6_B Protein PS 120; cytoske 8.2 1.3E+02 0.0045 18.7 1.0 14 428-441 6-19 (23)
6 3b9w_A Ammonium transporter fa 8.0 1.3E+03 0.043 23.6 9.0 44 228-271 213-257 (407)
7 3l1l_A Arginine/agmatine antip 8.0 9E+02 0.031 23.4 7.8 7 305-311 374-380 (445)
8 4dx5_A Acriflavine resistance 6.4 2.4E+03 0.082 23.6 13.1 13 252-264 907-919 (1057)
9 2v50_A Multidrug resistance pr 6.0 1.8E+03 0.062 24.7 9.8 26 238-264 380-405 (1052)
10 2w2e_A AQY1, aquaporin, aquapo 5.2 3.7E+02 0.013 26.0 3.0 22 283-304 245-266 (279)
No 1
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=17.83 E-value=68 Score=22.81 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=11.9
Q ss_pred CCCCchHHHHHHhhhh
Q 012038 453 TKIVIPIDVLAWGGFG 468 (472)
Q Consensus 453 ~~~~iP~WIL~~Gg~G 468 (472)
.+.++|+|+.+.+.+|
T Consensus 4 ~~~~vp~wiIi~s~l~ 19 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLG 19 (42)
T ss_dssp SCCCCCHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHH
Confidence 4557899998877654
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=14.49 E-value=9e+02 Score=24.16 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhcCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHHHHH
Q 012038 147 HATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAG 226 (472)
Q Consensus 147 ~l~ii~a~~~Af~~GaNDvaNa~G~~Vgs~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~~~~ 226 (472)
.+..+.++.+.+..-..+....+|...-....+..+++ +.|++++++.=--|..+...+-.+...+..
T Consensus 140 ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f----~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~p-------- 207 (340)
T 3iyz_A 140 CLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGL----LVELIITFQLVFTIFASCDDKRTDVTGSVA-------- 207 (340)
T ss_pred HHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHH----HHHHHHHHHHHHHHHHhhcCccCCcccchh--------
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012038 227 LLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCI 301 (472)
Q Consensus 227 ~~aAl~aaai~lliat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll 301 (472)
+.-++.+.+...+|.|.+-.-.-=.==.|-.+...+++. ..-.++.|+++++++.++|+.+
T Consensus 208 -----l~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~---------~WVywvgPiiGailaallY~~l 268 (340)
T 3iyz_A 208 -----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWEN---------HWIYWVGPIIGAVLAGALYEYV 268 (340)
T ss_pred -----hHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCc---------EeehhHHHHHHHHHHHHHHHHH
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.10 E-value=1.1e+02 Score=22.97 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=12.5
Q ss_pred CCCCCchHHHHHHhhhh
Q 012038 452 GTKIVIPIDVLAWGGFG 468 (472)
Q Consensus 452 ~~~~~iP~WIL~~Gg~G 468 (472)
.....+|+|+.+.+.+|
T Consensus 5 ~~~~~vp~wiIi~svl~ 21 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLG 21 (54)
T ss_dssp CTTTTCCHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHH
Confidence 34557899998887654
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.53 E-value=1.5e+02 Score=22.18 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.1
Q ss_pred CCCchHHHHHHhhhh
Q 012038 454 KIVIPIDVLAWGGFG 468 (472)
Q Consensus 454 ~~~iP~WIL~~Gg~G 468 (472)
...+|+|+.+.+.+|
T Consensus 4 ~~~vp~WiIi~svl~ 18 (54)
T 2l8s_A 4 PGRVPLWVILLSAFA 18 (54)
T ss_dssp CCCCCTHHHHHHHHH
T ss_pred CccCchHHHHHHHHH
Confidence 446899998877654
No 5
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=8.25 E-value=1.3e+02 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhHHH
Q 012038 428 GGNDVSNAIGPLAA 441 (472)
Q Consensus 428 GaNDVaNAiGPlaa 441 (472)
-+.||+||.+++.-
T Consensus 6 kaqdv~~AL~nvi~ 19 (23)
T 3tj6_B 6 KAREVINAVNPVIE 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999998654
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=8.00 E-value=1.3e+03 Score=23.59 Aligned_cols=44 Identities=11% Similarity=-0.069 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHh-cCCccccchhhhhhHHHHHHhhcCCCcc
Q 012038 228 LSSLAAAGTWLQVASY-YGWPVSTTHCIVGSMVGFGLVYGGAGAV 271 (472)
Q Consensus 228 ~aAl~aaai~lliat~-lGlPVSTTHaivGaIiGvGla~~G~~~V 271 (472)
+|+..++..|+++..+ ..=-.|.+++.-|++.|.-...-+...|
T Consensus 213 lAaaag~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v 257 (407)
T 3b9w_A 213 LALCGATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIV 257 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCC
Confidence 4555566667766664 3334578888889888877765443333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.00 E-value=9e+02 Score=23.39 Aligned_cols=7 Identities=0% Similarity=-0.130 Sum_probs=3.5
Q ss_pred HhcCCCh
Q 012038 305 VYSAPNP 311 (472)
Q Consensus 305 il~~~~~ 311 (472)
.+|+++|
T Consensus 374 ~~r~~~~ 380 (445)
T 3l1l_A 374 LLGHGHF 380 (445)
T ss_dssp HHHSSSS
T ss_pred HHhhcCc
Confidence 3455555
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=6.38 E-value=2.4e+03 Score=23.64 Aligned_cols=13 Identities=8% Similarity=0.302 Sum_probs=7.3
Q ss_pred hhhhhhHHHHHHh
Q 012038 252 HCIVGSMVGFGLV 264 (472)
Q Consensus 252 HaivGaIiGvGla 264 (472)
++++|++.+..+.
T Consensus 907 ~~~~~~~~~l~~~ 919 (1057)
T 4dx5_A 907 LGVIGALLAATFR 919 (1057)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666554
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=5.97 E-value=1.8e+03 Score=24.74 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=15.8
Q ss_pred HHHHHhcCCccccchhhhhhHHHHHHh
Q 012038 238 LQVASYYGWPVSTTHCIVGSMVGFGLV 264 (472)
Q Consensus 238 lliat~lGlPVSTTHaivGaIiGvGla 264 (472)
+.+..++|.|.+.. +++|-++.+|+.
T Consensus 380 ~~~l~~~g~~ln~~-s~~gl~~~iGi~ 405 (1052)
T 2v50_A 380 FGVLAAFGFSINTL-TMFGMVLAIGLL 405 (1052)
T ss_dssp HHHHHHHTCCCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHH-HHHHHHHHHHhh
Confidence 34445678887644 446666666654
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=5.15 E-value=3.7e+02 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=18.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 012038 283 WVISPILGALVSFLVYKCIRRF 304 (472)
Q Consensus 283 WilTP~ia~ila~~l~~ll~~~ 304 (472)
.++.|+++++++.++|+.+...
T Consensus 245 y~vgPiiGa~la~~ly~~l~~~ 266 (279)
T 2w2e_A 245 YWLGPILGAFLAYSIWQMWKWL 266 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3578999999999999987654
Done!