Query 012041
Match_columns 472
No_of_seqs 212 out of 1544
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00191 enolase 100.0 7.3E-95 1.6E-99 750.5 48.1 447 24-472 4-455 (457)
2 KOG2670 Enolase [Carbohydrate 100.0 8.2E-95 1.8E-99 687.4 37.1 428 44-472 1-433 (433)
3 PTZ00081 enolase; Provisional 100.0 5.4E-91 1.2E-95 719.3 47.0 425 44-468 2-439 (439)
4 COG0148 Eno Enolase [Carbohydr 100.0 2.1E-88 4.5E-93 664.3 42.6 411 45-470 3-421 (423)
5 PRK00077 eno enolase; Provisio 100.0 6.5E-87 1.4E-91 692.8 45.3 414 44-471 2-423 (425)
6 cd03313 enolase Enolase: Enola 100.0 1.1E-85 2.3E-90 680.4 43.5 402 48-458 1-408 (408)
7 TIGR01060 eno phosphopyruvate 100.0 4.1E-85 8.8E-90 679.3 44.1 415 46-471 1-424 (425)
8 PTZ00378 hypothetical protein; 100.0 1.5E-79 3.2E-84 628.2 43.6 413 27-462 29-481 (518)
9 PRK08350 hypothetical protein; 100.0 1.7E-66 3.7E-71 506.9 36.1 325 45-460 3-331 (341)
10 PF00113 Enolase_C: Enolase, C 100.0 2.6E-63 5.6E-68 487.1 26.6 289 184-472 3-295 (295)
11 TIGR01502 B_methylAsp_ase meth 100.0 2.4E-45 5.1E-50 376.5 33.6 328 61-459 50-405 (408)
12 PRK15072 bifunctional D-altron 100.0 4.4E-46 9.5E-51 386.3 28.3 313 44-434 1-336 (404)
13 cd03327 MR_like_2 Mandelate ra 100.0 4.1E-46 9E-51 378.7 23.9 292 45-431 1-293 (341)
14 cd03328 MR_like_3 Mandelate ra 100.0 1.5E-45 3.2E-50 375.9 26.2 291 45-430 1-305 (352)
15 cd03314 MAL Methylaspartate am 100.0 1E-44 2.2E-49 368.2 31.4 327 60-455 12-365 (369)
16 cd03322 rpsA The starvation se 100.0 1.1E-44 2.4E-49 370.8 28.2 288 45-430 1-289 (361)
17 PRK14017 galactonate dehydrata 100.0 1.2E-44 2.7E-49 373.3 26.2 300 44-430 1-301 (382)
18 cd03321 mandelate_racemase Man 100.0 1E-43 2.3E-48 363.1 32.2 294 44-430 1-307 (355)
19 TIGR02534 mucon_cyclo muconate 100.0 6.7E-44 1.5E-48 366.3 28.8 291 60-437 27-319 (368)
20 cd03318 MLE Muconate Lactonizi 100.0 7.3E-44 1.6E-48 365.8 28.7 304 45-435 1-318 (365)
21 cd03325 D-galactonate_dehydrat 100.0 1.5E-43 3.2E-48 361.5 28.1 301 45-432 1-302 (352)
22 cd03317 NAAAR N-acylamino acid 100.0 2.7E-43 5.8E-48 360.3 27.3 288 60-440 24-312 (354)
23 TIGR01928 menC_lowGC/arch o-su 100.0 5.3E-43 1.1E-47 353.4 27.3 287 60-441 21-308 (324)
24 cd03326 MR_like_1 Mandelate ra 100.0 1.3E-42 2.9E-47 357.0 26.2 285 60-430 26-333 (385)
25 PRK15440 L-rhamnonate dehydrat 100.0 5.9E-43 1.3E-47 360.1 23.5 272 61-430 57-331 (394)
26 COG4948 L-alanine-DL-glutamate 100.0 1.4E-42 3.1E-47 357.1 26.0 281 61-432 30-313 (372)
27 cd03316 MR_like Mandelate race 100.0 2.8E-42 6E-47 353.2 25.2 304 45-430 1-315 (357)
28 cd03323 D-glucarate_dehydratas 100.0 8E-42 1.7E-46 352.8 27.6 310 45-434 1-339 (395)
29 cd03324 rTSbeta_L-fuconate_deh 100.0 7.7E-42 1.7E-46 354.1 26.5 285 44-414 1-352 (415)
30 cd03329 MR_like_4 Mandelate ra 100.0 6.9E-42 1.5E-46 351.3 25.7 294 45-431 1-312 (368)
31 TIGR03247 glucar-dehydr glucar 100.0 1.3E-40 2.8E-45 346.8 27.2 309 44-430 4-354 (441)
32 cd03319 L-Ala-DL-Glu_epimerase 100.0 1.3E-39 2.9E-44 328.0 26.1 278 60-430 25-302 (316)
33 PRK15129 L-Ala-D/L-Glu epimera 100.0 3.4E-37 7.5E-42 310.7 23.9 263 60-428 27-289 (321)
34 cd03315 MLE_like Muconate lact 100.0 4.3E-36 9.4E-41 295.2 21.7 213 151-433 45-257 (265)
35 cd00308 enolase_like Enolase-s 100.0 4.2E-34 9.2E-39 275.1 23.7 178 151-432 44-221 (229)
36 cd03320 OSBS o-Succinylbenzoat 100.0 6.6E-35 1.4E-39 286.4 16.5 206 150-433 48-253 (263)
37 TIGR01927 menC_gamma/gm+ o-suc 100.0 1.4E-33 3E-38 282.5 20.8 258 60-431 21-283 (307)
38 PRK02714 O-succinylbenzoate sy 100.0 7.6E-32 1.7E-36 271.6 22.6 257 60-431 28-291 (320)
39 PLN02980 2-oxoglutarate decarb 100.0 2E-31 4.3E-36 316.0 25.9 295 44-430 931-1263(1655)
40 PRK05105 O-succinylbenzoate sy 100.0 2.8E-30 6E-35 260.3 20.2 259 60-438 27-290 (322)
41 PF03952 Enolase_N: Enolase, N 100.0 5.9E-29 1.3E-33 216.6 14.6 130 45-174 1-132 (132)
42 PRK02901 O-succinylbenzoate sy 99.9 1.1E-21 2.3E-26 197.5 17.3 138 260-433 120-258 (327)
43 COG3799 Mal Methylaspartate am 99.8 1.6E-18 3.4E-23 164.5 19.9 303 105-460 87-407 (410)
44 PF07476 MAAL_C: Methylasparta 99.8 1.6E-18 3.5E-23 159.3 17.4 183 259-459 48-246 (248)
45 PF02746 MR_MLE_N: Mandelate r 99.6 1.1E-15 2.5E-20 131.6 11.6 91 60-175 26-117 (117)
46 PF01188 MR_MLE: Mandelate rac 99.3 5.4E-12 1.2E-16 97.6 9.3 66 264-360 2-67 (67)
47 PF13378 MR_MLE_C: Enolase C-t 99.2 5.1E-11 1.1E-15 101.5 8.3 72 360-434 1-72 (111)
48 COG1441 MenC O-succinylbenzoat 99.2 1.1E-09 2.4E-14 101.5 16.7 258 60-438 27-289 (321)
49 PF05034 MAAL_N: Methylasparta 98.3 5.6E-06 1.2E-10 72.8 11.1 102 62-179 52-158 (159)
50 cd02932 OYE_YqiM_FMN Old yello 98.2 4.1E-05 8.9E-10 78.0 15.5 87 279-384 221-319 (336)
51 cd04733 OYE_like_2_FMN Old yel 97.9 9.9E-05 2.1E-09 75.3 11.4 87 279-384 216-321 (338)
52 cd02803 OYE_like_FMN_family Ol 97.5 0.0029 6.3E-08 64.1 15.6 87 279-384 208-310 (327)
53 cd02930 DCR_FMN 2,4-dienoyl-Co 97.4 0.00052 1.1E-08 70.5 8.3 72 311-384 219-305 (353)
54 cd02801 DUS_like_FMN Dihydrour 96.7 0.0057 1.2E-07 58.6 8.3 67 317-385 139-213 (231)
55 PRK00366 ispG 4-hydroxy-3-meth 94.7 0.35 7.6E-06 49.0 11.3 99 315-417 41-141 (360)
56 TIGR00612 ispG_gcpE 1-hydroxy- 93.9 0.49 1.1E-05 47.5 10.4 100 314-417 32-132 (346)
57 COG0821 gcpE 1-hydroxy-2-methy 93.6 0.29 6.3E-06 48.9 8.0 73 341-416 61-133 (361)
58 cd04734 OYE_like_3_FMN Old yel 93.2 0.95 2.1E-05 46.3 11.5 71 312-384 224-314 (343)
59 TIGR01182 eda Entner-Doudoroff 91.4 3.6 7.8E-05 38.9 12.1 107 314-436 18-126 (204)
60 PF00478 IMPDH: IMP dehydrogen 90.2 1.9 4.2E-05 44.1 9.7 93 343-441 137-243 (352)
61 PF04551 GcpE: GcpE protein; 89.6 0.62 1.3E-05 47.2 5.5 72 341-416 56-141 (359)
62 PTZ00314 inosine-5'-monophosph 89.2 5.4 0.00012 43.0 12.7 115 319-440 243-375 (495)
63 cd04747 OYE_like_5_FMN Old yel 89.1 3.7 8E-05 42.3 11.0 72 312-384 231-327 (361)
64 PRK13523 NADPH dehydrogenase N 88.8 2.9 6.2E-05 42.7 9.8 71 312-384 223-304 (337)
65 cd07939 DRE_TIM_NifV Streptomy 88.3 16 0.00036 35.6 14.6 128 311-442 15-163 (259)
66 cd00956 Transaldolase_FSA Tran 87.6 11 0.00024 35.8 12.4 117 314-438 62-185 (211)
67 PRK07107 inosine 5-monophospha 87.6 7.8 0.00017 41.8 12.6 120 315-441 240-384 (502)
68 PRK05096 guanosine 5'-monophos 87.1 5.2 0.00011 40.6 10.2 92 344-441 140-245 (346)
69 PRK10605 N-ethylmaleimide redu 87.1 8 0.00017 39.9 12.0 70 312-384 244-320 (362)
70 cd07940 DRE_TIM_IPMS 2-isoprop 86.9 19 0.0004 35.4 14.1 130 311-443 15-168 (268)
71 cd04735 OYE_like_4_FMN Old yel 86.4 4.4 9.6E-05 41.6 9.6 69 312-383 231-311 (353)
72 PRK10415 tRNA-dihydrouridine s 86.0 5.2 0.00011 40.5 9.8 69 317-387 150-226 (321)
73 PRK00694 4-hydroxy-3-methylbut 85.8 7.3 0.00016 42.1 10.9 97 315-417 44-169 (606)
74 TIGR00735 hisF imidazoleglycer 85.6 12 0.00025 36.5 11.8 90 317-409 156-253 (254)
75 COG0800 Eda 2-keto-3-deoxy-6-p 85.3 12 0.00027 35.3 11.1 90 314-414 23-114 (211)
76 PRK06015 keto-hydroxyglutarate 85.1 13 0.00028 35.0 11.3 107 314-436 14-122 (201)
77 PRK05718 keto-hydroxyglutarate 85.1 11 0.00024 35.9 10.9 108 314-437 25-134 (212)
78 PRK10550 tRNA-dihydrouridine s 84.7 9.7 0.00021 38.4 11.0 69 317-387 149-226 (312)
79 TIGR03128 RuMP_HxlA 3-hexulose 84.4 35 0.00075 31.7 14.3 117 314-438 10-133 (206)
80 KOG2550 IMP dehydrogenase/GMP 84.0 4.3 9.4E-05 41.9 7.9 96 339-440 276-385 (503)
81 cd02929 TMADH_HD_FMN Trimethyl 83.8 8.6 0.00019 39.8 10.4 41 343-384 278-318 (370)
82 TIGR02090 LEU1_arch isopropylm 83.7 25 0.00054 36.2 13.8 126 311-440 17-163 (363)
83 cd02931 ER_like_FMN Enoate red 83.7 12 0.00026 38.8 11.5 72 311-384 247-334 (382)
84 PRK11613 folP dihydropteroate 83.2 35 0.00076 33.9 14.0 96 312-416 34-143 (282)
85 TIGR01305 GMP_reduct_1 guanosi 82.6 8.9 0.00019 38.9 9.5 92 344-441 139-244 (343)
86 cd02933 OYE_like_FMN Old yello 82.2 13 0.00028 37.9 10.9 69 313-384 238-313 (338)
87 cd07943 DRE_TIM_HOA 4-hydroxy- 82.0 52 0.0011 32.1 14.7 128 311-442 17-165 (263)
88 PF01081 Aldolase: KDPG and KH 81.9 19 0.00041 33.8 10.9 115 314-444 18-136 (196)
89 PRK08255 salicylyl-CoA 5-hydro 81.4 15 0.00032 41.9 12.0 72 311-384 633-716 (765)
90 PRK13398 3-deoxy-7-phosphohept 80.9 21 0.00045 35.2 11.4 92 316-414 77-170 (266)
91 TIGR01361 DAHP_synth_Bsub phos 80.9 13 0.00028 36.5 9.9 91 316-413 75-167 (260)
92 PF01207 Dus: Dihydrouridine s 80.7 6.7 0.00015 39.5 8.1 68 315-384 137-212 (309)
93 TIGR02660 nifV_homocitr homoci 80.3 52 0.0011 33.9 14.6 127 311-441 18-165 (365)
94 TIGR00736 nifR3_rel_arch TIM-b 79.3 18 0.00039 34.9 10.1 60 323-384 154-219 (231)
95 PRK06552 keto-hydroxyglutarate 79.0 14 0.0003 35.1 9.2 108 314-437 23-135 (213)
96 COG1902 NemA NADH:flavin oxido 78.7 18 0.00038 37.4 10.5 72 311-384 232-317 (363)
97 PRK08673 3-deoxy-7-phosphohept 78.5 21 0.00045 36.5 10.7 92 316-414 143-236 (335)
98 cd07941 DRE_TIM_LeuA3 Desulfob 78.3 72 0.0016 31.4 14.4 130 311-442 15-175 (273)
99 PRK13396 3-deoxy-7-phosphohept 78.2 16 0.00035 37.5 9.9 96 311-414 147-244 (352)
100 PRK07259 dihydroorotate dehydr 78.0 17 0.00036 36.3 10.0 49 342-392 222-270 (301)
101 cd03174 DRE_TIM_metallolyase D 77.9 56 0.0012 31.4 13.5 126 311-440 14-168 (265)
102 PRK11858 aksA trans-homoaconit 77.8 59 0.0013 33.7 14.2 126 311-440 21-167 (378)
103 cd02810 DHOD_DHPD_FMN Dihydroo 77.1 9.1 0.0002 37.8 7.7 40 343-384 230-271 (289)
104 PRK13397 3-deoxy-7-phosphohept 77.0 21 0.00045 34.9 9.8 96 311-414 61-158 (250)
105 PRK07807 inosine 5-monophospha 76.7 18 0.00039 38.8 10.2 91 344-440 257-361 (479)
106 PRK12595 bifunctional 3-deoxy- 76.4 23 0.00049 36.6 10.5 95 311-413 164-260 (360)
107 TIGR01302 IMP_dehydrog inosine 75.8 20 0.00044 38.1 10.3 92 343-440 253-358 (450)
108 PLN02979 glycolate oxidase 75.4 25 0.00053 36.3 10.3 93 340-440 209-309 (366)
109 cd04726 KGPDC_HPS 3-Keto-L-gul 74.5 46 0.00099 30.7 11.4 115 314-437 11-132 (202)
110 PRK02048 4-hydroxy-3-methylbut 74.5 22 0.00048 38.8 10.0 97 314-416 39-164 (611)
111 TIGR01303 IMP_DH_rel_1 IMP deh 73.8 28 0.0006 37.3 10.7 92 343-440 254-359 (475)
112 TIGR01769 GGGP geranylgeranylg 73.5 27 0.00059 33.0 9.4 69 313-384 131-204 (205)
113 cd02911 arch_FMN Archeal FMN-b 73.4 35 0.00075 32.9 10.4 64 317-385 153-220 (233)
114 PRK00278 trpC indole-3-glycero 73.1 23 0.00051 34.7 9.3 107 324-438 77-187 (260)
115 PLN02925 4-hydroxy-3-methylbut 73.0 29 0.00062 38.6 10.5 98 314-417 108-234 (733)
116 cd00452 KDPG_aldolase KDPG and 72.7 35 0.00075 31.6 9.9 108 314-437 14-123 (190)
117 PF00724 Oxidored_FMN: NADH:fl 72.5 14 0.00029 37.8 7.8 40 344-384 281-320 (341)
118 PRK11815 tRNA-dihydrouridine s 72.4 56 0.0012 33.2 12.2 76 314-393 149-241 (333)
119 TIGR01037 pyrD_sub1_fam dihydr 72.3 19 0.00041 35.9 8.6 40 344-385 224-263 (300)
120 cd07944 DRE_TIM_HOA_like 4-hyd 71.7 1.1E+02 0.0023 30.1 14.6 128 311-442 15-162 (266)
121 cd03332 LMO_FMN L-Lactate 2-mo 71.4 34 0.00075 35.5 10.4 92 341-440 240-339 (383)
122 PRK07114 keto-hydroxyglutarate 71.4 37 0.0008 32.5 9.9 107 314-436 25-137 (222)
123 PRK06843 inosine 5-monophospha 71.1 69 0.0015 33.6 12.5 94 341-440 180-287 (404)
124 TIGR01304 IMP_DH_rel_2 IMP deh 70.8 37 0.00081 35.1 10.4 45 341-390 175-219 (369)
125 PLN02274 inosine-5'-monophosph 70.2 73 0.0016 34.5 12.9 115 319-440 250-382 (505)
126 PLN02493 probable peroxisomal 69.9 32 0.00069 35.5 9.7 92 341-440 211-310 (367)
127 PLN02535 glycolate oxidase 69.8 29 0.00062 35.9 9.3 94 341-440 210-309 (364)
128 PLN02321 2-isopropylmalate syn 69.2 91 0.002 34.7 13.6 130 311-442 103-264 (632)
129 cd00381 IMPDH IMPDH: The catal 68.9 1E+02 0.0022 31.2 13.1 92 343-440 123-228 (325)
130 cd07945 DRE_TIM_CMS Leptospira 68.4 97 0.0021 30.7 12.6 128 311-442 14-171 (280)
131 cd04740 DHOD_1B_like Dihydroor 68.2 37 0.0008 33.7 9.7 57 342-400 219-275 (296)
132 cd00331 IGPS Indole-3-glycerol 68.0 75 0.0016 29.9 11.3 88 323-413 37-128 (217)
133 PRK08649 inosine 5-monophospha 68.0 48 0.001 34.3 10.6 93 342-440 175-287 (368)
134 PF00682 HMGL-like: HMGL-like 67.4 46 0.001 31.7 9.9 138 313-453 11-172 (237)
135 PRK05458 guanosine 5'-monophos 67.3 36 0.00079 34.6 9.4 87 346-440 131-232 (326)
136 TIGR02708 L_lactate_ox L-lacta 66.1 63 0.0014 33.4 10.9 95 340-440 214-314 (367)
137 cd04736 MDH_FMN Mandelate dehy 65.5 41 0.00089 34.7 9.4 107 342-456 224-343 (361)
138 TIGR00742 yjbN tRNA dihydrouri 65.3 71 0.0015 32.3 11.1 68 315-386 140-224 (318)
139 TIGR03217 4OH_2_O_val_ald 4-hy 65.1 1.7E+02 0.0036 29.9 15.8 128 311-442 19-167 (333)
140 COG0106 HisA Phosphoribosylfor 64.5 79 0.0017 30.6 10.5 120 263-400 110-239 (241)
141 KOG2335 tRNA-dihydrouridine sy 64.4 91 0.002 31.9 11.4 67 315-383 154-231 (358)
142 PF01070 FMN_dh: FMN-dependent 64.2 36 0.00079 35.0 8.9 92 341-440 212-311 (356)
143 cd00739 DHPS DHPS subgroup of 64.0 1.1E+02 0.0024 29.9 11.9 96 312-416 20-130 (257)
144 TIGR00973 leuA_bact 2-isopropy 63.0 1.9E+02 0.0041 31.2 14.4 129 311-442 18-170 (494)
145 PRK05567 inosine 5'-monophosph 62.7 43 0.00093 36.0 9.5 106 329-440 241-362 (486)
146 PRK00915 2-isopropylmalate syn 62.7 2.3E+02 0.005 30.7 15.3 127 311-440 21-171 (513)
147 PRK09389 (R)-citramalate synth 62.6 2E+02 0.0043 31.0 14.4 127 311-441 19-166 (488)
148 cd02809 alpha_hydroxyacid_oxid 62.5 1.5E+02 0.0033 29.5 12.9 93 342-440 160-258 (299)
149 PRK08195 4-hyroxy-2-oxovalerat 61.6 1.9E+02 0.0042 29.4 16.0 128 311-442 20-168 (337)
150 PRK01033 imidazole glycerol ph 61.6 88 0.0019 30.5 10.7 47 337-384 179-225 (258)
151 PRK11197 lldD L-lactate dehydr 61.4 45 0.00097 34.7 8.9 91 342-440 233-331 (381)
152 PRK05692 hydroxymethylglutaryl 61.4 1.8E+02 0.0038 28.9 14.5 127 311-442 21-179 (287)
153 PLN02746 hydroxymethylglutaryl 60.1 2.1E+02 0.0045 29.4 13.5 127 311-442 63-221 (347)
154 PRK12344 putative alpha-isopro 59.2 2.4E+02 0.0053 30.6 14.5 129 311-441 22-181 (524)
155 TIGR01306 GMP_reduct_2 guanosi 59.0 74 0.0016 32.3 9.8 116 320-441 97-230 (321)
156 PRK07998 gatY putative fructos 58.7 1.8E+02 0.0039 28.9 12.3 67 347-414 67-138 (283)
157 TIGR03572 WbuZ glycosyl amidat 57.6 99 0.0021 29.3 10.2 43 341-384 184-226 (232)
158 cd04737 LOX_like_FMN L-Lactate 57.1 1E+02 0.0022 31.7 10.6 93 342-440 209-307 (351)
159 COG0042 tRNA-dihydrouridine sy 55.0 24 0.00052 35.8 5.6 50 341-391 184-234 (323)
160 cd04732 HisA HisA. Phosphorib 53.6 1.8E+02 0.0038 27.5 11.2 44 339-384 175-218 (234)
161 COG1167 ARO8 Transcriptional r 53.5 1.1E+02 0.0025 32.4 10.8 91 315-410 164-264 (459)
162 PRK09140 2-dehydro-3-deoxy-6-p 52.9 1.5E+02 0.0033 27.8 10.4 108 314-437 20-130 (206)
163 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.6 2.4E+02 0.0052 27.7 14.4 128 312-442 17-173 (275)
164 TIGR03569 NeuB_NnaB N-acetylne 51.6 74 0.0016 32.4 8.5 86 314-407 74-160 (329)
165 PRK02083 imidazole glycerol ph 50.7 34 0.00073 33.2 5.7 67 341-409 184-251 (253)
166 TIGR03586 PseI pseudaminic aci 50.6 1.1E+02 0.0023 31.3 9.4 35 314-349 75-109 (327)
167 PF02197 RIIa: Regulatory subu 49.4 7 0.00015 26.4 0.5 15 27-41 17-31 (38)
168 PRK12581 oxaloacetate decarbox 49.4 3.6E+02 0.0079 28.9 13.7 129 312-442 31-187 (468)
169 PRK14024 phosphoribosyl isomer 49.1 1.6E+02 0.0035 28.2 10.2 60 324-384 153-221 (241)
170 KOG2367 Alpha-isopropylmalate 49.0 3.7E+02 0.008 28.9 13.1 119 310-430 73-213 (560)
171 cd04731 HisF The cyclase subun 49.0 1.4E+02 0.0029 28.6 9.6 53 394-446 150-208 (243)
172 COG2861 Uncharacterized protei 48.6 2.4E+02 0.0053 27.4 10.8 81 314-417 135-218 (250)
173 cd04738 DHOD_2_like Dihydrooro 48.5 92 0.002 31.5 8.7 41 343-385 267-309 (327)
174 PLN02617 imidazole glycerol ph 48.0 2.3E+02 0.005 31.0 12.0 87 318-409 440-536 (538)
175 PF01408 GFO_IDH_MocA: Oxidore 47.1 1.6E+02 0.0035 24.2 9.5 75 326-413 43-120 (120)
176 PRK11840 bifunctional sulfur c 46.4 2.3E+02 0.005 28.8 10.8 98 310-414 144-257 (326)
177 TIGR03392 FeS_syn_CsdA cystein 46.3 1.1E+02 0.0024 31.4 9.1 98 315-413 87-194 (398)
178 PRK10874 cysteine sulfinate de 45.9 1E+02 0.0023 31.6 8.9 98 315-413 90-197 (401)
179 PRK06852 aldolase; Validated 45.4 99 0.0021 31.1 8.1 72 369-440 120-210 (304)
180 TIGR01362 KDO8P_synth 3-deoxy- 45.3 90 0.0019 30.6 7.5 97 311-413 54-151 (258)
181 cd04724 Tryptophan_synthase_al 44.2 2.1E+02 0.0046 27.5 10.2 95 314-413 12-136 (242)
182 COG0113 HemB Delta-aminolevuli 44.1 2E+02 0.0043 28.9 9.7 127 261-411 174-316 (330)
183 cd06660 Aldo_ket_red Aldo-keto 44.1 2.5E+02 0.0054 27.1 10.9 97 314-413 91-199 (285)
184 PRK13585 1-(5-phosphoribosyl)- 43.3 3E+02 0.0064 26.1 13.1 44 339-384 178-221 (241)
185 PRK12331 oxaloacetate decarbox 43.2 4.4E+02 0.0095 28.1 13.9 128 312-442 22-178 (448)
186 PF00218 IGPS: Indole-3-glycer 43.0 1.1E+02 0.0024 29.9 7.9 95 312-413 67-165 (254)
187 cd04728 ThiG Thiazole synthase 42.9 2.6E+02 0.0056 27.3 10.1 119 311-439 71-205 (248)
188 COG1954 GlpP Glycerol-3-phosph 42.8 96 0.0021 28.5 6.8 56 323-380 114-169 (181)
189 PLN03228 methylthioalkylmalate 42.5 3.3E+02 0.0071 29.5 12.0 130 311-442 101-263 (503)
190 PRK13957 indole-3-glycerol-pho 42.4 3.3E+02 0.0073 26.5 11.9 95 312-413 60-158 (247)
191 PRK13587 1-(5-phosphoribosyl)- 42.4 3.2E+02 0.0069 26.2 11.2 102 264-384 112-220 (234)
192 cd07948 DRE_TIM_HCS Saccharomy 42.2 3.4E+02 0.0074 26.5 12.1 126 311-440 17-163 (262)
193 PRK07428 nicotinate-nucleotide 42.0 1.8E+02 0.0039 29.1 9.3 88 344-441 184-274 (288)
194 PRK08185 hypothetical protein; 41.9 3.3E+02 0.0072 27.1 11.2 74 363-438 147-228 (283)
195 cd00947 TBP_aldolase_IIB Tagat 41.5 1.2E+02 0.0026 30.0 8.0 63 348-413 63-132 (276)
196 PRK00748 1-(5-phosphoribosyl)- 41.5 57 0.0012 30.9 5.7 43 341-384 177-219 (233)
197 cd04732 HisA HisA. Phosphorib 41.4 1.3E+02 0.0028 28.4 8.2 53 394-446 147-205 (234)
198 cd04823 ALAD_PBGS_aspartate_ri 41.3 2.2E+02 0.0047 28.8 9.7 127 261-411 166-308 (320)
199 PRK05198 2-dehydro-3-deoxyphos 41.2 1.1E+02 0.0024 30.0 7.5 97 311-413 62-159 (264)
200 COG1453 Predicted oxidoreducta 41.2 3.5E+02 0.0076 28.0 11.2 92 314-411 91-201 (391)
201 TIGR02151 IPP_isom_2 isopenten 41.0 3E+02 0.0064 28.0 11.0 49 336-385 157-210 (333)
202 PRK09283 delta-aminolevulinic 40.9 1.9E+02 0.0042 29.2 9.2 128 261-412 169-312 (323)
203 PRK10867 signal recognition pa 40.2 1.2E+02 0.0027 32.1 8.3 131 330-466 131-274 (433)
204 TIGR00284 dihydropteroate synt 40.1 4.4E+02 0.0095 28.5 12.5 112 346-466 200-317 (499)
205 PF00490 ALAD: Delta-aminolevu 39.8 2.9E+02 0.0063 28.0 10.3 105 261-380 171-292 (324)
206 PRK08247 cystathionine gamma-s 38.6 3.5E+02 0.0076 27.6 11.4 94 317-413 78-173 (366)
207 PRK01130 N-acetylmannosamine-6 38.4 2.5E+02 0.0053 26.4 9.5 112 314-437 21-145 (221)
208 PRK06801 hypothetical protein; 38.0 1.6E+02 0.0036 29.3 8.4 61 350-413 70-137 (286)
209 PLN03033 2-dehydro-3-deoxyphos 37.9 1.4E+02 0.003 29.8 7.5 97 311-413 68-165 (290)
210 cd00288 Pyruvate_Kinase Pyruva 37.7 2.3E+02 0.005 30.5 10.0 140 313-457 172-337 (480)
211 PRK13561 putative diguanylate 37.7 5.9E+02 0.013 28.0 14.0 122 318-444 502-641 (651)
212 TIGR00977 LeuA_rel 2-isopropyl 37.5 4.1E+02 0.0088 29.0 12.0 128 311-440 18-176 (526)
213 PRK14847 hypothetical protein; 37.2 4.7E+02 0.01 26.7 12.1 94 311-407 49-165 (333)
214 PRK07565 dihydroorotate dehydr 37.2 4.5E+02 0.0098 26.5 15.6 134 314-451 112-284 (334)
215 PRK13384 delta-aminolevulinic 37.0 2.2E+02 0.0048 28.8 8.9 106 261-380 171-291 (322)
216 COG0119 LeuA Isopropylmalate/h 36.9 4.6E+02 0.0099 27.6 11.8 129 310-442 18-170 (409)
217 TIGR01496 DHPS dihydropteroate 36.6 2.6E+02 0.0056 27.3 9.5 93 313-415 20-127 (257)
218 cd00954 NAL N-Acetylneuraminic 36.5 4.2E+02 0.009 26.1 11.1 124 259-413 52-188 (288)
219 PRK06176 cystathionine gamma-s 36.4 2.1E+02 0.0045 29.6 9.3 114 319-435 78-197 (380)
220 TIGR00737 nifR3_yhdG putative 36.4 61 0.0013 32.6 5.2 43 341-384 179-221 (319)
221 TIGR02129 hisA_euk phosphoribo 35.4 4.3E+02 0.0092 25.9 10.6 110 266-383 117-231 (253)
222 COG0134 TrpC Indole-3-glycerol 35.2 2.6E+02 0.0057 27.3 9.0 93 313-412 66-162 (254)
223 PRK05458 guanosine 5'-monophos 34.9 3.7E+02 0.0081 27.3 10.5 112 323-442 54-172 (326)
224 cd00377 ICL_PEPM Members of th 34.7 2.2E+02 0.0048 27.5 8.6 44 314-360 158-202 (243)
225 PRK08508 biotin synthase; Prov 34.6 4.5E+02 0.0098 25.8 12.1 104 313-421 40-167 (279)
226 PRK13399 fructose-1,6-bisphosp 34.1 1.9E+02 0.0041 29.7 8.2 54 355-409 76-139 (347)
227 cd02811 IDI-2_FMN Isopentenyl- 33.8 5E+02 0.011 26.2 11.4 49 336-385 156-209 (326)
228 PRK07896 nicotinate-nucleotide 33.8 3.2E+02 0.0069 27.3 9.6 90 344-442 188-278 (289)
229 PRK00208 thiG thiazole synthas 33.6 4.4E+02 0.0096 25.7 10.2 119 311-439 71-205 (250)
230 PRK13398 3-deoxy-7-phosphohept 33.1 4.8E+02 0.01 25.6 11.6 92 338-433 119-226 (266)
231 PRK08227 autoinducer 2 aldolas 33.0 1.9E+02 0.0041 28.5 7.8 70 370-440 100-180 (264)
232 PRK09195 gatY tagatose-bisphos 32.8 2E+02 0.0044 28.6 8.0 67 346-413 66-137 (284)
233 PLN02446 (5-phosphoribosyl)-5- 32.8 4.6E+02 0.01 25.8 10.4 102 264-377 122-229 (262)
234 PRK02083 imidazole glycerol ph 32.7 3E+02 0.0066 26.4 9.3 54 394-447 154-213 (253)
235 cd00384 ALAD_PBGS Porphobilino 32.1 3.9E+02 0.0085 27.0 9.7 106 261-380 161-282 (314)
236 PF04131 NanE: Putative N-acet 32.0 75 0.0016 29.7 4.5 40 341-382 132-171 (192)
237 PRK12737 gatY tagatose-bisphos 31.9 2.1E+02 0.0045 28.5 8.0 66 343-409 63-131 (284)
238 PRK10060 RNase II stability mo 31.8 7.6E+02 0.016 27.5 14.7 109 321-435 512-636 (663)
239 PLN02855 Bifunctional selenocy 31.8 2.6E+02 0.0056 29.0 9.2 97 315-412 103-209 (424)
240 PRK14040 oxaloacetate decarbox 31.7 7.5E+02 0.016 27.4 14.0 125 312-442 23-179 (593)
241 PRK09250 fructose-bisphosphate 31.7 2.2E+02 0.0049 29.2 8.2 75 370-445 152-244 (348)
242 PF03102 NeuB: NeuB family; I 31.2 2.7E+02 0.0059 26.9 8.5 35 314-349 54-88 (241)
243 COG0434 SgcQ Predicted TIM-bar 31.2 1.3E+02 0.0028 29.2 6.0 84 368-451 167-255 (263)
244 cd00952 CHBPH_aldolase Trans-o 30.9 5.5E+02 0.012 25.6 15.5 120 259-410 59-191 (309)
245 PRK08960 hypothetical protein; 30.7 1.9E+02 0.0041 29.6 7.9 98 316-413 102-205 (387)
246 TIGR02026 BchE magnesium-proto 30.7 7E+02 0.015 26.8 15.1 137 313-452 222-387 (497)
247 PRK07998 gatY putative fructos 30.7 1.8E+02 0.0039 29.0 7.3 70 312-386 152-230 (283)
248 cd02808 GltS_FMN Glutamate syn 30.4 4.5E+02 0.0097 27.4 10.6 94 344-440 203-316 (392)
249 PTZ00300 pyruvate kinase; Prov 30.1 3.6E+02 0.0079 28.8 9.9 130 326-457 156-311 (454)
250 COG0403 GcvP Glycine cleavage 30.0 85 0.0018 33.0 4.9 123 314-440 148-282 (450)
251 PF01116 F_bP_aldolase: Fructo 29.7 1.8E+02 0.0038 29.0 7.1 68 345-413 64-136 (287)
252 cd06453 SufS_like Cysteine des 29.6 3E+02 0.0065 27.7 9.1 81 331-412 90-175 (373)
253 COG0673 MviM Predicted dehydro 29.3 1.5E+02 0.0033 29.5 6.8 80 324-415 45-127 (342)
254 PF01729 QRPTase_C: Quinolinat 29.0 2.7E+02 0.0058 25.4 7.6 38 365-406 88-125 (169)
255 TIGR01858 tag_bisphos_ald clas 28.5 2.7E+02 0.0057 27.7 8.1 68 345-413 63-135 (282)
256 PRK13753 dihydropteroate synth 28.5 4.3E+02 0.0094 26.2 9.5 94 312-415 21-128 (279)
257 PLN02460 indole-3-glycerol-pho 28.4 4.3E+02 0.0093 27.0 9.6 94 312-412 138-236 (338)
258 COG0520 csdA Selenocysteine ly 28.3 1.9E+02 0.0041 30.3 7.4 96 315-413 93-199 (405)
259 PRK12457 2-dehydro-3-deoxyphos 28.3 2.3E+02 0.0049 28.2 7.3 90 311-406 68-157 (281)
260 PRK00748 1-(5-phosphoribosyl)- 28.0 2.1E+02 0.0045 27.0 7.1 104 342-446 85-205 (233)
261 PRK13802 bifunctional indole-3 27.6 5.9E+02 0.013 28.8 11.4 94 313-413 70-167 (695)
262 cd04723 HisA_HisF Phosphoribos 27.6 5.2E+02 0.011 24.6 9.8 102 265-383 114-217 (233)
263 PRK09197 fructose-bisphosphate 27.1 2.7E+02 0.0059 28.6 7.9 68 346-413 84-168 (350)
264 PRK08185 hypothetical protein; 27.1 3E+02 0.0065 27.4 8.2 63 346-409 60-125 (283)
265 PRK12738 kbaY tagatose-bisphos 27.0 2.9E+02 0.0063 27.5 8.0 67 346-413 66-137 (286)
266 PRK00451 glycine dehydrogenase 27.0 2.8E+02 0.006 29.0 8.5 83 328-411 153-238 (447)
267 cd02812 PcrB_like PcrB_like pr 26.7 4.8E+02 0.01 24.9 9.2 70 312-384 131-203 (219)
268 PRK09206 pyruvate kinase; Prov 26.7 4.8E+02 0.01 28.0 10.0 138 313-454 170-333 (470)
269 PRK11320 prpB 2-methylisocitra 26.5 6.5E+02 0.014 25.2 10.4 43 314-359 164-207 (292)
270 cd04731 HisF The cyclase subun 26.2 1.3E+02 0.0028 28.8 5.4 43 341-384 180-222 (243)
271 COG0161 BioA Adenosylmethionin 26.2 2.6E+02 0.0056 29.8 7.8 68 317-386 198-279 (449)
272 PRK08610 fructose-bisphosphate 26.1 3.1E+02 0.0068 27.3 8.1 68 346-414 67-141 (286)
273 COG1260 INO1 Myo-inositol-1-ph 26.0 2.3E+02 0.0049 29.1 7.0 85 316-400 145-235 (362)
274 COG2088 SpoVG Uncharacterized 25.8 1.2E+02 0.0026 24.5 4.0 26 44-70 1-26 (95)
275 TIGR01303 IMP_DH_rel_1 IMP deh 25.8 1.4E+02 0.0031 32.0 6.0 76 367-448 227-304 (475)
276 PRK06806 fructose-bisphosphate 25.7 3.4E+02 0.0075 26.9 8.3 63 348-413 68-137 (281)
277 PLN02656 tyrosine transaminase 25.7 2.8E+02 0.0061 28.7 8.2 92 316-411 106-207 (409)
278 PF00128 Alpha-amylase: Alpha 25.6 87 0.0019 30.3 4.1 40 378-418 38-81 (316)
279 TIGR01979 sufS cysteine desulf 25.6 3.9E+02 0.0085 27.3 9.2 98 315-413 89-196 (403)
280 PRK07709 fructose-bisphosphate 25.4 3.3E+02 0.0071 27.1 8.1 66 343-409 64-134 (285)
281 cd04729 NanE N-acetylmannosami 25.1 5.7E+02 0.012 23.9 10.9 110 316-436 27-148 (219)
282 smart00052 EAL Putative diguan 24.9 3.4E+02 0.0074 25.0 8.0 65 351-419 143-214 (241)
283 TIGR01329 cysta_beta_ly_E cyst 24.6 4.4E+02 0.0096 27.0 9.3 93 318-413 74-168 (378)
284 TIGR01521 FruBisAldo_II_B fruc 24.5 3.5E+02 0.0075 27.8 8.2 61 348-409 66-137 (347)
285 cd04824 eu_ALAD_PBGS_cysteine_ 24.5 6.9E+02 0.015 25.3 10.0 128 261-411 165-309 (320)
286 PRK05286 dihydroorotate dehydr 24.5 1.9E+02 0.0042 29.5 6.5 41 343-385 276-318 (344)
287 PRK06512 thiamine-phosphate py 24.4 1.8E+02 0.0039 27.7 5.9 61 368-437 30-93 (221)
288 COG0157 NadC Nicotinate-nucleo 24.3 3.7E+02 0.0079 26.7 8.0 75 364-445 195-269 (280)
289 PRK07094 biotin synthase; Prov 24.3 7.1E+02 0.015 24.7 13.2 106 313-422 70-197 (323)
290 cd00958 DhnA Class I fructose- 24.0 2.7E+02 0.0058 26.3 7.1 47 394-440 110-165 (235)
291 smart00394 RIIa RIIalpha, Regu 24.0 36 0.00077 22.7 0.7 16 26-41 16-31 (38)
292 PRK02261 methylaspartate mutas 23.6 5E+02 0.011 22.6 9.5 50 366-415 42-94 (137)
293 TIGR00875 fsa_talC_mipB fructo 23.5 6.4E+02 0.014 23.9 10.2 92 314-409 62-158 (213)
294 cd04729 NanE N-acetylmannosami 23.4 1.8E+02 0.0038 27.4 5.6 42 341-384 164-205 (219)
295 PF04131 NanE: Putative N-acet 23.3 2.1E+02 0.0046 26.7 5.8 72 342-414 20-100 (192)
296 PRK12857 fructose-1,6-bisphosp 23.2 3.2E+02 0.0069 27.2 7.5 63 346-409 66-131 (284)
297 COG0352 ThiE Thiamine monophos 23.1 4.8E+02 0.01 24.7 8.4 74 355-438 8-88 (211)
298 PRK01130 N-acetylmannosamine-6 23.1 2E+02 0.0043 27.0 6.0 44 340-385 159-202 (221)
299 PRK05437 isopentenyl pyrophosp 22.9 8.2E+02 0.018 25.0 11.9 48 336-384 164-216 (352)
300 TIGR01334 modD putative molybd 22.9 6.9E+02 0.015 24.8 9.8 70 365-440 196-265 (277)
301 PF02310 B12-binding: B12 bind 22.7 4.3E+02 0.0093 21.6 8.0 48 367-414 40-89 (121)
302 COG0107 HisF Imidazoleglycerol 22.7 1.5E+02 0.0033 28.6 4.9 134 265-409 111-253 (256)
303 TIGR02080 O_succ_thio_ly O-suc 22.7 4.6E+02 0.01 27.0 9.0 96 315-413 75-173 (382)
304 PRK06354 pyruvate kinase; Prov 22.7 5.6E+02 0.012 28.4 9.9 141 313-457 176-342 (590)
305 PRK04169 geranylgeranylglycery 22.6 7E+02 0.015 24.0 9.8 69 313-384 137-212 (232)
306 COG2022 ThiG Uncharacterized e 22.4 1.6E+02 0.0034 28.5 4.8 64 341-410 169-232 (262)
307 PRK08610 fructose-bisphosphate 22.4 2.2E+02 0.0048 28.3 6.2 73 363-437 154-232 (286)
308 PF00155 Aminotran_1_2: Aminot 22.4 4E+02 0.0087 26.6 8.4 94 316-413 78-188 (363)
309 smart00642 Aamy Alpha-amylase 22.3 82 0.0018 28.5 3.0 32 379-411 57-88 (166)
310 cd02067 B12-binding B12 bindin 22.3 3E+02 0.0066 22.8 6.4 49 366-414 38-89 (119)
311 PRK09427 bifunctional indole-3 22.2 3.1E+02 0.0068 29.2 7.7 97 312-413 69-166 (454)
312 cd03115 SRP The signal recogni 22.2 3.2E+02 0.007 24.2 6.9 25 441-465 147-172 (173)
313 PTZ00066 pyruvate kinase; Prov 22.2 6.5E+02 0.014 27.3 10.1 139 313-454 207-370 (513)
314 PTZ00433 tyrosine aminotransfe 22.0 4E+02 0.0087 27.5 8.5 95 315-413 113-217 (412)
315 TIGR03551 F420_cofH 7,8-dideme 21.8 8.4E+02 0.018 24.6 12.0 105 313-420 70-208 (343)
316 PF13714 PEP_mutase: Phosphoen 21.7 4.8E+02 0.011 25.1 8.3 76 259-360 118-197 (238)
317 TIGR01108 oadA oxaloacetate de 21.7 1.1E+03 0.024 26.0 14.4 128 312-442 17-173 (582)
318 COG1105 FruK Fructose-1-phosph 21.6 7.3E+02 0.016 25.1 9.7 91 316-413 117-221 (310)
319 PRK05835 fructose-bisphosphate 21.5 3.8E+02 0.0081 27.1 7.7 63 346-409 65-131 (307)
320 TIGR03572 WbuZ glycosyl amidat 21.5 3.8E+02 0.0083 25.2 7.6 63 341-408 61-123 (232)
321 PRK13307 bifunctional formalde 21.4 8.1E+02 0.018 25.6 10.3 94 314-411 183-281 (391)
322 PRK07028 bifunctional hexulose 21.3 9.5E+02 0.021 25.1 12.2 120 314-438 14-138 (430)
323 cd00408 DHDPS-like Dihydrodipi 21.3 7.6E+02 0.016 23.9 13.3 123 260-413 49-183 (281)
324 COG0106 HisA Phosphoribosylfor 21.3 3.8E+02 0.0082 26.0 7.3 101 341-442 85-202 (241)
325 PLN02389 biotin synthase 21.3 9.3E+02 0.02 25.0 12.0 110 312-426 115-248 (379)
326 PRK09196 fructose-1,6-bisphosp 21.3 4.1E+02 0.009 27.3 8.0 56 355-413 76-145 (347)
327 TIGR00167 cbbA ketose-bisphosp 21.2 4.3E+02 0.0093 26.3 8.0 66 343-409 64-134 (288)
328 PRK06247 pyruvate kinase; Prov 21.2 7.4E+02 0.016 26.7 10.2 139 313-457 171-333 (476)
329 PRK05826 pyruvate kinase; Prov 20.9 6.9E+02 0.015 26.8 10.0 137 313-454 171-334 (465)
330 PRK05965 hypothetical protein; 20.9 1.9E+02 0.0042 30.7 5.8 33 333-366 219-260 (459)
331 PRK04147 N-acetylneuraminate l 20.9 8.1E+02 0.017 24.1 12.2 111 260-400 56-178 (293)
332 cd02922 FCB2_FMN Flavocytochro 20.8 6.6E+02 0.014 25.7 9.5 93 341-440 200-302 (344)
333 cd00453 FTBP_aldolase_II Fruct 20.7 4.5E+02 0.0098 26.9 8.0 67 348-414 79-162 (340)
334 PRK07360 FO synthase subunit 2 20.5 9.3E+02 0.02 24.7 11.1 103 312-422 90-232 (371)
335 PRK11059 regulatory protein Cs 20.4 1.1E+03 0.024 25.9 12.1 111 318-434 500-627 (640)
336 PF00977 His_biosynth: Histidi 20.2 4.6E+02 0.0099 24.9 7.8 100 266-383 111-218 (229)
337 PRK07084 fructose-bisphosphate 20.2 4.7E+02 0.01 26.6 8.1 64 347-413 76-148 (321)
338 TIGR01859 fruc_bis_ald_ fructo 20.1 5.6E+02 0.012 25.4 8.6 62 347-409 66-131 (282)
339 cd00405 PRAI Phosphoribosylant 20.1 3.9E+02 0.0085 24.6 7.2 70 365-440 7-82 (203)
340 PRK06855 aminotransferase; Val 20.1 8.2E+02 0.018 25.5 10.4 95 316-411 106-209 (433)
No 1
>PLN00191 enolase
Probab=100.00 E-value=7.3e-95 Score=750.52 Aligned_cols=447 Identities=73% Similarity=1.143 Sum_probs=420.7
Q ss_pred CCCCCcchhhhhhhhhcCCC--ceEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccC
Q 012041 24 PRSYRPMRVQCSVASTASSS--AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYG 100 (472)
Q Consensus 24 ~~~~~p~~~~~~~~~~~~~~--m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~ 100 (472)
.+..+|+|+|||||+||+++ |+|++|++|+|+||+|+|||+|+|+|+ |.+++++|+|+|||++|+.+++|+++. |.
T Consensus 4 ~~~~~~~d~~~~la~~~~~~~~~~I~~v~~r~ildsrG~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~-~~ 82 (457)
T PLN00191 4 AVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKD-YL 82 (457)
T ss_pred cccCCCcChHHHHHHHHhhccCCeeeEEEEEEEEcCCCCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcc-cC
Confidence 45689999999999999884 689999999999999999999999999 977999999999999999999999876 99
Q ss_pred cchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCC
Q 012041 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (472)
Q Consensus 101 g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~ 180 (472)
|+++..+++.|++.|+|.|+|+|+.||+.||+.|.++|++.+++.+|.||+.|||||+|++.|+.+|+|||+||+++.|.
T Consensus 83 g~gv~~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~ 162 (457)
T PLN00191 83 GKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGN 162 (457)
T ss_pred CccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999433376
Q ss_pred CcceeeeeEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCc
Q 012041 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDN 260 (472)
Q Consensus 181 ~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~ 260 (472)
.+.++|+|++|+++||.|+++.+++||||++|.++.++.++++++.++|+.+|+.|+.|+|..+..+|++|+|.|+++++
T Consensus 163 ~~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~ 242 (457)
T PLN00191 163 KKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDN 242 (457)
T ss_pred CCccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCH
Confidence 66789999999999999999999999999999999999999999999999999999999988778899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecccccccc-cCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCC
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~-~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~ 339 (472)
++.|+++++|++.+||+|+|.|++|+++++||+ + ++|.++|.+++++.+..+|++++++++.+++++|++.||||||+
T Consensus 243 ~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~-~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~ 321 (457)
T PLN00191 243 KEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKD-KKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFD 321 (457)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccC-CceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCC
Confidence 999999999999999987899999999999997 6 89998654433333455799999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh
Q 012041 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETE 419 (472)
Q Consensus 340 ~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~ 419 (472)
++|+++|++|+++..+||++||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+|++|+++||+
T Consensus 322 ~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~ 401 (457)
T PLN00191 322 QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETE 401 (457)
T ss_pred cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccch
Confidence 99999999999999999999998779999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCCcccCCCCCchhHHHhhHHHHHHHHhC-CccccCcCCCCC
Q 012041 420 DNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG-NVRYAGQDFRSP 472 (472)
Q Consensus 420 ~s~~a~lAva~~~~~i~~g~~~~~e~~~k~n~ll~i~~~l~-~~~~~~~~~~~~ 472 (472)
+++++|||+|+.+++++.|.|+|+||++|||||||||++|+ .++|.|..||.+
T Consensus 402 d~~~Adlava~~~~~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~ 455 (457)
T PLN00191 402 DSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKP 455 (457)
T ss_pred HHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccC
Confidence 99999999999999999999999999999999999999999 889999889863
No 2
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-95 Score=687.44 Aligned_cols=428 Identities=73% Similarity=1.152 Sum_probs=417.0
Q ss_pred ceEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCC
Q 012041 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (472)
Q Consensus 44 m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~ 122 (472)
|-|.+|++|.|+||+|+|||+|+++|+ |++|+++|||+|||.+|+.+++|+++..|.|+++..++..|++.|+|.|++.
T Consensus 1 m~~~kv~aR~I~dSRGnPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~ 80 (433)
T KOG2670|consen 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKK 80 (433)
T ss_pred CCceeeehhhhhhcCCCCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHcc
Confidence 445669999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCC-cceeeeeEEEeecCCccC
Q 012041 123 --DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK-ELVMPVPAFNVINGGSHA 199 (472)
Q Consensus 123 --d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~-~~~vp~~~~~~~~gg~~~ 199 (472)
|+.+|++||+.|..+|++.+.+++|.||+.|||+|++.+.|...|+|||+++.++.|.. .-.+|+|.|++++||.|+
T Consensus 81 ~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHA 160 (433)
T KOG2670|consen 81 NLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHA 160 (433)
T ss_pred CCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999998877 357999999999999999
Q ss_pred CCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCC
Q 012041 200 GNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK 279 (472)
Q Consensus 200 ~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~ 279 (472)
++++.+||+|++|.++.+++++++++.+.|+++|..+|.|+|.+...||++|||.|++.+..+.|+++.+|++.+||+|+
T Consensus 161 Gn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~k 240 (433)
T KOG2670|consen 161 GNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGK 240 (433)
T ss_pred cchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEe
Q 012041 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (472)
Q Consensus 280 i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~ 359 (472)
+.|++|+++++||.+ |+|+++|..|++|..+.+|.+++.++|..++.+||+..|||||+.+||++|.++....+++|+|
T Consensus 241 ikIgmDvAaseF~~d-gkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVg 319 (433)
T KOG2670|consen 241 VKIGMDVAASEFYKD-GKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVG 319 (433)
T ss_pred eEEEEeechhhhhcC-CcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEec
Confidence 999999999999987 9999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCC
Q 012041 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGA 439 (472)
Q Consensus 360 dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~ 439 (472)
|++.+|++.++++.+++++||.+.+|++|+|++||.++++++|+++|+.+|++|+++||++++++||.|++++++||.|.
T Consensus 320 DDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl~tgqIKtGA 399 (433)
T KOG2670|consen 320 DDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGA 399 (433)
T ss_pred CcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhhccceeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHhhHHHHHHHHhC-CccccCcCCCCC
Q 012041 440 PCRSERLAKYNQLLRIEEELG-NVRYAGQDFRSP 472 (472)
Q Consensus 440 ~~~~e~~~k~n~ll~i~~~l~-~~~~~~~~~~~~ 472 (472)
||||||++|||+||||||||+ .++|.|++||.|
T Consensus 400 pcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 400 PCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred CchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 999999999999999999999 999999999997
No 3
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=5.4e-91 Score=719.28 Aligned_cols=425 Identities=68% Similarity=1.095 Sum_probs=400.0
Q ss_pred ceEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCC
Q 012041 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (472)
Q Consensus 44 m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~ 122 (472)
|+|++|++|+|+||+|+|||+|+|+|+ |.+++++|+|+|||++|+.+++|+++.+|.|+++..+++.+++.|+|.|+|+
T Consensus 2 ~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG~ 81 (439)
T PTZ00081 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIGK 81 (439)
T ss_pred cEEEEEEEEEEecCCCCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999 9779999999999999999999998778999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-hcCCCC-----CCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCC--CcceeeeeEEEeec
Q 012041 123 DIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT--KELVMPVPAFNVIN 194 (472)
Q Consensus 123 d~~d~e~i~~~l~~-~~~~~~-----~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~--~~~~vp~~~~~~~~ 194 (472)
|+.+|+.||+.|.+ +|++.+ ++++|.||+.|||||+|+++|+.+|+|||+|||++.|. ....+|+|+|++++
T Consensus 82 d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~niin 161 (439)
T PTZ00081 82 DVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVIN 161 (439)
T ss_pred ChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEecc
Confidence 99999999999999 999987 88999999999999999999999999999999544465 34479999999999
Q ss_pred CCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 012041 195 GGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKA 274 (472)
Q Consensus 195 gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~ 274 (472)
||.|+++.+++||||++|.++.++.++++++.++|+.+|+.|+.|+|..+..++++|+|.|+++++++.|+++++|++++
T Consensus 162 GG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~~a 241 (439)
T PTZ00081 162 GGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKA 241 (439)
T ss_pred CcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998877889999999999999999999999999999
Q ss_pred CCCCCcEEEEecccccccccC-cceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhc
Q 012041 275 GYTGKINIGMDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV 353 (472)
Q Consensus 275 g~~g~i~l~vD~~a~~~~~~~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~ 353 (472)
||++++.|++|++++++|+.+ ++|+++|..+..++|+.+|++|++++|.+++++|++.||||||+++|+++|++|++++
T Consensus 242 g~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~l 321 (439)
T PTZ00081 242 GYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAI 321 (439)
T ss_pred CCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhh
Confidence 998789999999999999632 7899876543334556799999999999999999999999999999999999999999
Q ss_pred --CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhc
Q 012041 354 --DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLA 431 (472)
Q Consensus 354 --~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~ 431 (472)
.+||++||++++++++++++++.+++|+++||++|+||||++++++++|+++|+.++++|+++||.+++++|||||++
T Consensus 322 g~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~iadLAVa~~ 401 (439)
T PTZ00081 322 GQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLG 401 (439)
T ss_pred CCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHHHHHHHHcC
Confidence 699999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCchhHHHhhHHHHHHHHhC-CccccCcC
Q 012041 432 SGQIKTGAPCRSERLAKYNQLLRIEEELG-NVRYAGQD 468 (472)
Q Consensus 432 ~~~i~~g~~~~~e~~~k~n~ll~i~~~l~-~~~~~~~~ 468 (472)
++|+|.|+|+|+||++|||||||||++|+ .+.|.+.+
T Consensus 402 ~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 402 TGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred CCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 99999999999999999999999999999 77787753
No 4
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-88 Score=664.25 Aligned_cols=411 Identities=58% Similarity=0.945 Sum_probs=395.1
Q ss_pred eEEEEEEEEEecCCCCCeEEEEEEEC-Cee-eeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCC
Q 012041 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (472)
Q Consensus 45 ~I~~V~~~~v~~~~~~~~v~V~I~td-G~~-~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~ 122 (472)
.|++|.+|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||..|+.+++|++ .+|.|+++..+++.+++.|+|.|+|.
T Consensus 3 ~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd-~ry~gkGV~~AV~nVn~~Iap~LiG~ 81 (423)
T COG0148 3 AIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGD-SRYLGKGVLKAVANVNEIIAPALIGL 81 (423)
T ss_pred ccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCc-cccccccHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999999999999 988 8999999999999999999998 69999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCc
Q 012041 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (472)
Q Consensus 123 d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~ 202 (472)
|+.||..||+.|..+|++.+++++|.||+.|||||+..++|..+|+|||++|| |.....+|+|++++++||.|+++.
T Consensus 82 da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~NvinGG~HA~n~ 158 (423)
T COG0148 82 DATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNN 158 (423)
T ss_pred CcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---CccccccccceeeeecccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999 976668999999999999999999
Q ss_pred ccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-C-Cc
Q 012041 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KI 280 (472)
Q Consensus 203 l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~-g-~i 280 (472)
+++||+|++|.++.++.++++++.++|+++|+.|+.| |.... +||||+|.|++.+.++.++.+.+|++++||. | +|
T Consensus 159 ~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~~t~-vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i 236 (423)
T COG0148 159 LDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GLSTG-VGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDI 236 (423)
T ss_pred ccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Ccccc-ccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcce
Confidence 9999999999999999999999999999999999988 76544 9999999999999999999999999999998 6 79
Q ss_pred EEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC--CeEE
Q 012041 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLV 358 (472)
Q Consensus 281 ~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~--~pI~ 358 (472)
.|++||++++||++ ++|.++ +..+|++|+++++.+++++|||..||||+.++||++|++|++.++ ++|+
T Consensus 237 ~~alD~Aasefy~~-~~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqiv 307 (423)
T COG0148 237 ALALDVAASEFYKD-GKYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIV 307 (423)
T ss_pred eeeehhhhhhhccC-Ceeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEE
Confidence 99999999999998 889886 457899999999999999999999999999999999999999998 8999
Q ss_pred eCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 359 ~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
||++++||++.+++.|+.+++|.+.||++|+|++||+++.+++|+.+|+.+|++|+++||+|++++|||||++++|+|.|
T Consensus 308 GDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 308 GDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred CCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHhhHHHHHHHHhC-CccccCcC-CC
Q 012041 439 APCRSERLAKYNQLLRIEEELG-NVRYAGQD-FR 470 (472)
Q Consensus 439 ~~~~~e~~~k~n~ll~i~~~l~-~~~~~~~~-~~ 470 (472)
.++||||++|||||||||++|+ .++|.|.. |.
T Consensus 388 s~sRseRiaKyNqLlrIEeeLg~~a~y~g~~~f~ 421 (423)
T COG0148 388 SLSRSERVAKYNELLRIEEELGDKARYAGIKEFK 421 (423)
T ss_pred CCcchhHHHHHHHHHHHHHHhhhccccCChHhhc
Confidence 9999999999999999999999 88898843 43
No 5
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=6.5e-87 Score=692.81 Aligned_cols=414 Identities=58% Similarity=0.940 Sum_probs=392.0
Q ss_pred ceEEEEEEEEEecCCCCCeEEEEEEEC-Cee-eeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccC
Q 012041 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (472)
Q Consensus 44 m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~-~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG 121 (472)
|+|++|++|+|+||+|+|||+|+|+|+ |.+ ++.+|+|+|+|.+|+.+++|+++.+|.|+++..+++.|++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~LiG 81 (425)
T PRK00077 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALIG 81 (425)
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999 987 999999999999999999998877899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCC
Q 012041 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (472)
Q Consensus 122 ~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~ 201 (472)
+||.+|+.||+.|.+++++.+++++|.+|++|||||+||+.||.+|+|||+||| |..++++|+|+|++++||.|+++
T Consensus 82 ~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~GG~ha~~ 158 (425)
T PRK00077 82 LDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIINGGAHADN 158 (425)
T ss_pred CChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEcccccccC
Confidence 999999999999999988887788888999999999999999999999999999 97666799999999999999988
Q ss_pred cccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-C-C
Q 012041 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-K 279 (472)
Q Consensus 202 ~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~-g-~ 279 (472)
+++++|+|++|.++.+++++++++.++|+++|..++.| |. ..++|++|+|.|+++++++.|++++++++.+||+ | +
T Consensus 159 ~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G~d 236 (425)
T PRK00077 159 NVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236 (425)
T ss_pred chhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCCCc
Confidence 89999999999999999999999999999999888877 64 4679999999999989999999999999999998 7 7
Q ss_pred cEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhc--CCeE
Q 012041 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQL 357 (472)
Q Consensus 280 i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~--~~pI 357 (472)
+.|++|+|+++||.+ ++|+++ ++.||++++++++.+++++|++.||||||+++|+++|++|++++ .+||
T Consensus 237 i~l~lD~aas~~~~~-~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI 307 (425)
T PRK00077 237 IALALDCAASEFYKD-GKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQL 307 (425)
T ss_pred eEEEEehhhhhcccC-Ceeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeE
Confidence 999999999999977 899874 56799999999999999999999999999999999999999999 4999
Q ss_pred EeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 358 ~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
++||++++++++++++++.+++|+++||++++||||++++++++|+++|+.+|++|+++||++++++|||||++++++|+
T Consensus 308 ~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~~ik~ 387 (425)
T PRK00077 308 VGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKT 387 (425)
T ss_pred EcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCccccC
Confidence 99998778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHhhHHHHHHHHhC-CccccC-cCCCC
Q 012041 438 GAPCRSERLAKYNQLLRIEEELG-NVRYAG-QDFRS 471 (472)
Q Consensus 438 g~~~~~e~~~k~n~ll~i~~~l~-~~~~~~-~~~~~ 471 (472)
|+++++||++|||||||||++|+ .+.|.+ ..||.
T Consensus 388 G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 423 (425)
T PRK00077 388 GSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423 (425)
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccceecchhhccc
Confidence 99999999999999999999999 788988 67874
No 6
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=1.1e-85 Score=680.38 Aligned_cols=402 Identities=64% Similarity=1.027 Sum_probs=381.5
Q ss_pred EEEEEEEecCCCCCeEEEEEEEC-Cee-eeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCC
Q 012041 48 SVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR 125 (472)
Q Consensus 48 ~V~~~~v~~~~~~~~v~V~I~td-G~~-~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~ 125 (472)
+|++|+|+||+|+|||+|+|+|+ |.+ ++.+|+|+|+|.+|+.+++|+++..|.|+++.+++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 48899999999999999999999 887 9999999999999999999998778999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccc
Q 012041 126 DQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAM 205 (472)
Q Consensus 126 d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~ 205 (472)
+|+.||+.|.+++++.+++.+|.+|++|||||+||+.||.+|+|||+||| |..+.++|+|+|++++||.|+++++++
T Consensus 81 dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha~~~~~i 157 (408)
T cd03313 81 DQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHAGNKLDF 157 (408)
T ss_pred hHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccccCcccc
Confidence 99999999999999888888999999999999999999999999999999 876678999999999999999999999
Q ss_pred cceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-C-CcEEE
Q 012041 206 QEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIG 283 (472)
Q Consensus 206 ~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~-g-~i~l~ 283 (472)
+|+|++|.++.+++++++++.++|+++|+.|+.|.|....++|++|+|.|++++++++|++++++++.+||. | ++.|+
T Consensus 158 qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~ 237 (408)
T cd03313 158 QEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237 (408)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 999999999999999999999999999988888876667899999999999999999999999999999998 5 79999
Q ss_pred EecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhc--CCeEEeCC
Q 012041 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGDD 361 (472)
Q Consensus 284 vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~--~~pI~~dE 361 (472)
+|+|+++||++ ++|.+... .|+.||++|+++++.+++++|++.||||||+++|+++|++|++++ .+||++||
T Consensus 238 lD~aas~~~~~-~~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE 311 (408)
T cd03313 238 LDVAASEFYDE-GKYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDD 311 (408)
T ss_pred Eehhhhhhccc-CcceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCC
Confidence 99999999988 88876311 368899999999999988999999999999999999999999998 69999999
Q ss_pred ccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 362 LLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 362 ~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
++++++++++++++.+++|+++||++|+||||++++++++|+++|+.+|++|.++||++++++|||||++++++|.|.|+
T Consensus 312 ~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ik~G~~~ 391 (408)
T cd03313 312 LFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPC 391 (408)
T ss_pred cccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCccccCCCc
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHhhHHHHHHHH
Q 012041 442 RSERLAKYNQLLRIEEE 458 (472)
Q Consensus 442 ~~e~~~k~n~ll~i~~~ 458 (472)
++||++|||||||||++
T Consensus 392 r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 392 RSERTAKYNQLLRIEEE 408 (408)
T ss_pred chHHHHHHHHHHHHhhC
Confidence 99999999999999985
No 7
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=4.1e-85 Score=679.34 Aligned_cols=415 Identities=58% Similarity=0.952 Sum_probs=387.3
Q ss_pred EEEEEEEEEecCCCCCeEEEEEEEC-Cee-eeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCC
Q 012041 46 VKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (472)
Q Consensus 46 I~~V~~~~v~~~~~~~~v~V~I~td-G~~-~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d 123 (472)
|++|++|+|+||+|+|||+|+|+|+ |.+ ++.+|+|+|+|.+|+.+++|+++..|.|+++..++..|++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999 988 99999999999999999999987789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcc
Q 012041 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (472)
Q Consensus 124 ~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l 203 (472)
|.||+.||+.|.+++++.+++.+|.+|++||||||||+.||.+|+|||+||| |..++++|+|++++++||.|+++.+
T Consensus 81 ~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~~a~~~~ 157 (425)
T TIGR01060 81 AFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGAHADNNL 157 (425)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccccccCcc
Confidence 9999999999988878776666888999999999999999999999999999 9777789999999999999988888
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-C-CcE
Q 012041 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KIN 281 (472)
Q Consensus 204 ~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~-g-~i~ 281 (472)
+++|+|++|.++++++++++.+.++|+++|+.++.| |. ..++|++|+|.|+++++++.|+.++++++++|++ | ++.
T Consensus 158 ~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~ 235 (425)
T TIGR01060 158 DFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVA 235 (425)
T ss_pred CHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceE
Confidence 899999999999999999999999999999888777 64 4668999999999888999999999999999987 6 799
Q ss_pred EEEecccccccccC-cceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhc--CCeEE
Q 012041 282 IGMDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLV 358 (472)
Q Consensus 282 l~vD~~a~~~~~~~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~--~~pI~ 358 (472)
|++|+|++++|+.+ ++|++. ..+..||.+++++++.+++++|++.||||||+++|+++|++|++++ .+||+
T Consensus 236 l~lD~aas~~~~~~~~~y~~~------~~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~ 309 (425)
T TIGR01060 236 LALDCAASEFYDEEDGKYVYK------GENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIV 309 (425)
T ss_pred EEEEccccccccccCceeeec------CcccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEE
Confidence 99999999999832 789874 1235689999999988788999999999999999999999999999 69999
Q ss_pred eCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 359 ~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
+||++++++++++++++.+++|+++||++++||||++++++++|+++|+.+|++|+++||++++++|||||++++++|.|
T Consensus 310 gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ik~g 389 (425)
T TIGR01060 310 GDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQIKTG 389 (425)
T ss_pred eCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCccccC
Confidence 99987788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHhhHHHHHHHHhC-CccccC-cCCCC
Q 012041 439 APCRSERLAKYNQLLRIEEELG-NVRYAG-QDFRS 471 (472)
Q Consensus 439 ~~~~~e~~~k~n~ll~i~~~l~-~~~~~~-~~~~~ 471 (472)
+++++||++|||||||||++|+ .+.|.+ ..||.
T Consensus 390 ~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~~ 424 (425)
T TIGR01060 390 SLSRSERIAKYNQLLRIEEELGDSARYAGKNTFYR 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHhcccceecchhccCC
Confidence 9999999999999999999999 888999 68874
No 8
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-79 Score=628.22 Aligned_cols=413 Identities=20% Similarity=0.310 Sum_probs=375.7
Q ss_pred CCcchhhhhhhhhcCCC---ceEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCc-c-C
Q 012041 27 YRPMRVQCSVASTASSS---AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSV-Y-G 100 (472)
Q Consensus 27 ~~p~~~~~~~~~~~~~~---m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~-~-~ 100 (472)
.+|+|++||||.||.+. ++|++|++|+|+||+|+|||+|+|+|+ |.+ +|||+||| |+.+++|+++.. | .
T Consensus 29 ~~~~d~~~~l~~~f~~~~~~~~I~~i~areIlDSrGnPTVev~v~l~~G~~---vPSGAStG--EA~elRDgd~~~~~g~ 103 (518)
T PTZ00378 29 AHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAGETVLRFTLELLNGME---VSSGALLS--PSHGERDGEADATLDP 103 (518)
T ss_pred cCCCCHHHHHHHHHHhhcCCCeeeEEEEEEEEcCCCCeeEEEEEEECCCCE---ECCCCccc--ceeeeecCCcccccCC
Confidence 45777788999999992 999999999999999999999999999 863 99999999 999999988654 6 6
Q ss_pred cchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCC
Q 012041 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (472)
Q Consensus 101 g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~ 180 (472)
|+++..++. +.|+|.|+|+++.||.+||+.|.++|++.+++++|.||+.|||||++.++|+..++|||++||.+.+.
T Consensus 104 gkgV~~Av~---~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~ 180 (518)
T PTZ00378 104 AEYTTEALQ---NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGS 180 (518)
T ss_pred CccHHHHHH---hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccc
Confidence 778887765 67999999999999999999999999999999999999999999999999999999999999943321
Q ss_pred ----CcceeeeeEEEeecCCccCCCcccccceeeccCCc--ccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCC-
Q 012041 181 ----KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA--TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGF- 253 (472)
Q Consensus 181 ----~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~--~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~- 253 (472)
....+|+|++|+++||.|+++++++||||++|.++ .++.|+++++.++|++|++ |. ...+|+||||
T Consensus 181 ~~~~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~~-~t~vGDEGGfa 253 (518)
T PTZ00378 181 LTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------SH-NSSVRSDGSLH 253 (518)
T ss_pred cccCCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------cc-cCccCCCcCcC
Confidence 23479999999999999999999999999999877 8999999999999999852 32 3679999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCC-C-CcEEEEecccccc------------cccC--c---ceeecCCCCCCCCCCccC
Q 012041 254 APNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEF------------FTKD--G---NYDLNFKKQPNDGAHVLS 314 (472)
Q Consensus 254 ~~~~~~~~~~l~~v~~av~~~g~~-g-~i~l~vD~~a~~~------------~~~~--~---~y~~~~~~~~~~~n~~~s 314 (472)
.|.+++.++.|+++.+|++++||+ | +|.|++|++|++| |+++ + .|.+. . ....+|
T Consensus 254 ap~~~~~eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~-----~~~~~t 327 (518)
T PTZ00378 254 WDGFANLTDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P-----GEPDVT 327 (518)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C-----CCCCCC
Confidence 677888999999999999999998 6 6999999999999 9652 2 57763 1 123379
Q ss_pred HHHHHHHHHHHHhhCC--eeEEeCCCCcCCHHHHHHHHhhcC--CeEEeCCcccc-CHHHHHHHHHcCCCCEEEeccCCc
Q 012041 315 AQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVT-NPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~--l~~iEdP~~~~D~~~~~~L~~~~~--~pI~~dE~~~~-~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
.+|++++|.+++++|| |.+|||||+.+||++|++|+++++ +.|+||++++| ++..+++.|+.+++|.+.||++|+
T Consensus 328 ~~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQI 407 (518)
T PTZ00378 328 GDQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAI 407 (518)
T ss_pred HHHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccc
Confidence 9999999999999999 999999999999999999999996 99999999999 799999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCcEE---ecCCCCCChhhHHHHHHHhhcCCCcccCCCCCchhHHHhhHHHHHHHHhCCc
Q 012041 390 GTVTESIQAALDSKSAGWGVM---VSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGNV 462 (472)
Q Consensus 390 GGitea~~ia~~A~a~g~~~~---v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~~~e~~~k~n~ll~i~~~l~~~ 462 (472)
|+||++++++++|+.+|+.+| ++|++| ++++++|||||++++|||.|+++|+||++|||||||||+||+..
T Consensus 408 GTlSEtieav~lA~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IKtGa~~r~ER~aKyNqLlrIeeeLg~~ 481 (518)
T PTZ00378 408 GTLSDVVEIVRAVGEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLCSGGLFSAHQCEVVSQLASRQDELTHS 481 (518)
T ss_pred eeHHHHHHHHHHHHHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccccCCCccchHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999998 999998 58999999999999999999999999999999999999999633
No 9
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-66 Score=506.86 Aligned_cols=325 Identities=29% Similarity=0.456 Sum_probs=295.9
Q ss_pred eEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCC
Q 012041 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (472)
Q Consensus 45 ~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d 123 (472)
+|++|++|+|+||+|+|||+|+|+|+ |..++++||. +++.+|. .++..+++.+++.|+|.|+|+|
T Consensus 3 ~I~~i~aReIlDSRGnPTVEveV~~~~g~gra~vPSD-------------~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPID-------------ENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEEEcCCCCceEEEEEEECCcEEEEEecCC-------------CCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999 9339999972 2223577 7899999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcc
Q 012041 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (472)
Q Consensus 124 ~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l 203 (472)
+.+|+.||+.|.++|++.+++++|.||+.|||||++.++|+.+|+|||++|| |.....+|+|++|+++||
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiNGG------- 138 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAEDE------- 138 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeecCC-------
Confidence 9999999999999999999999999999999999999999999999999999 854557999999999987
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCC-C-CcE
Q 012041 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KIN 281 (472)
Q Consensus 204 ~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~-g-~i~ 281 (472)
++ |||++| .++++ +.++|+++|..||. +.++.|+.+.+|++++||. | ++.
T Consensus 139 ~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~dv~ 190 (341)
T PRK08350 139 NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLEVA 190 (341)
T ss_pred ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCccccEE
Confidence 35 999998 57888 78999999988763 2488999999999999998 6 799
Q ss_pred EEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeC
Q 012041 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGD 360 (472)
Q Consensus 282 l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~d 360 (472)
+.+|+. ..+|++|++ +++++|||.+|| ||+.+ ++|++|+++.. ++|+||
T Consensus 191 ~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~g~~iqiVGD 240 (341)
T PRK08350 191 LGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAGTHGVFIDGE 240 (341)
T ss_pred EeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhcCCceEEEcc
Confidence 999992 114788876 788999999999 99955 99999999943 999999
Q ss_pred CccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 361 DLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 361 E~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++++|++.. +.++||.+.||++|+|++||+++.+++|+++|+.+|++|++|||+|++++|||||++++++|
T Consensus 241 DLfvTN~~~-----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa~~agqIK---- 311 (341)
T PRK08350 241 YLFRTRNIL-----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRCPAML---- 311 (341)
T ss_pred cccccChhH-----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHHhCCCccc----
Confidence 999999644 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHhhHHHHHHHHhC
Q 012041 441 CRSERLAKYNQLLRIEEELG 460 (472)
Q Consensus 441 ~~~e~~~k~n~ll~i~~~l~ 460 (472)
+|+||++|||||||||++|+
T Consensus 312 ~R~ER~aKyN~LlrIee~lg 331 (341)
T PRK08350 312 IHKDSVEKINELNRIAEDLG 331 (341)
T ss_pred cchhHHHHHHHHHHHHHHcC
Confidence 79999999999999999998
No 10
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=2.6e-63 Score=487.07 Aligned_cols=289 Identities=65% Similarity=1.096 Sum_probs=252.7
Q ss_pred eeeeeEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHH
Q 012041 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREG 263 (472)
Q Consensus 184 ~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~ 263 (472)
.+|+|++|+++||.|+++++++||+|++|.++.++.++++++.++|+++|+.|+.|.|.....+|++|+|.|++++.++.
T Consensus 3 ~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~eea 82 (295)
T PF00113_consen 3 TLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEEA 82 (295)
T ss_dssp EE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHHH
T ss_pred ccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhHH
Confidence 68999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecccccccccC-cceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCC
Q 012041 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342 (472)
Q Consensus 264 l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D 342 (472)
|+++.+|++++||+++|.|++|++|++||+.+ |+|++++..+..+..+.+|++|++++|.+++++|||.+|||||+.+|
T Consensus 83 L~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~edD 162 (295)
T PF00113_consen 83 LDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDEDD 162 (295)
T ss_dssp HHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT-
T ss_pred HHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEccccccc
Confidence 99999999999998899999999999999644 99999865544445567899999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 012041 343 WSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETED 420 (472)
Q Consensus 343 ~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~ 420 (472)
|++|++|+++++ +.|+||++++|++..+++.++.++||.+.||++|+|++|++++++++|+.+|+.+|++|+++||+|
T Consensus 163 ~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~~a~~~g~~~vvS~rsgEteD 242 (295)
T PF00113_consen 163 WEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVKLAKSAGWGVVVSHRSGETED 242 (295)
T ss_dssp HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S-
T ss_pred hHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHHHHHHCCceeeccCCCCCcCc
Confidence 999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCcccCCCCCchhHHHhhHHHHHHHHhC-CccccCcCCCCC
Q 012041 421 NFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG-NVRYAGQDFRSP 472 (472)
Q Consensus 421 s~~a~lAva~~~~~i~~g~~~~~e~~~k~n~ll~i~~~l~-~~~~~~~~~~~~ 472 (472)
++++|||||++++++|.|+|+|+||++|||||||||++|+ +++|.|.+||+|
T Consensus 243 ~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 243 TFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp -HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred hhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 9999999999999999999999999999999999999999 899999999997
No 11
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=2.4e-45 Score=376.47 Aligned_cols=328 Identities=19% Similarity=0.275 Sum_probs=247.2
Q ss_pred CeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcch-------HHHHHHHHHHhhhhcccCCCCCCHHHHHH
Q 012041 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKG-------VLNAVKNINDILGPKLVGVDIRDQAEVDA 132 (472)
Q Consensus 61 ~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~-------~~~a~~~i~~~lap~LiG~d~~d~e~i~~ 132 (472)
..|+|+|+|+ |. +||||+.+. .|.+++ ..++...|++.++|.|+|+|+.+++++++
T Consensus 50 ~~vlV~i~tddG~----------~G~GE~~~~------~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~ 113 (408)
T TIGR01502 50 ESLSVLLVLEDGQ----------VVHGDCAAV------QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAE 113 (408)
T ss_pred cEEEEEEEECCCC----------EEEEEeecc------eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHH
Confidence 4699999999 99 899998642 466654 66777888889999999999999999999
Q ss_pred HHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcC--CCcceeeeeEEEeecCCccCCCcccccceee
Q 012041 133 IMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210 (472)
Q Consensus 133 ~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G--~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~ 210 (472)
.|...... ++ +..++++|||+||||+.||..|+|||+|||..+| ..++++|+ |.+++...+. +
T Consensus 114 ~~~~~~~~--~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~--~~s~g~~~~~----~------ 178 (408)
T TIGR01502 114 VFEKMTVN--RN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPV--FAQSGDDRYD----N------ 178 (408)
T ss_pred HHHHHhhc--Cc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeE--EEEeeccCCC----C------
Confidence 99874211 12 3456789999999999999999999999993332 33445554 6554211000 0
Q ss_pred ccCCcccHHHHHHHHHHH-HHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCC-CcEEEEeccc
Q 012041 211 LPVGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG-KINIGMDVAA 288 (472)
Q Consensus 211 ~p~~~~~~~~a~~~~~~~-~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g-~i~l~vD~~a 288 (472)
.++.+.++.+...+| |+.+| |+|.+. ..+.+.++.+++.+++++..| ++.|++|+|
T Consensus 179 ---~d~m~~~a~~~~~~G~~~~~K-----kvG~~~-------------~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN- 236 (408)
T TIGR01502 179 ---VDKMILKEVDVLPHGLINSVE-----ELGLDG-------------EKLLEYVKWLRDRIIKLGREGYAPIFHIDVY- 236 (408)
T ss_pred ---HHHHHHHHHHHHhccCcccee-----eecCCH-------------HHhhhhHHHHHHHHHHhhccCCCCeEEEEcC-
Confidence 123345565655554 65554 344221 112355666666666554114 689999994
Q ss_pred ccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHh---hCCeeEEeCCCCcCC----HHHHHHHHhh-----cCCe
Q 012041 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR---DFPIVSIEDPFDQDD----WSSWASLQSS-----VDIQ 356 (472)
Q Consensus 289 ~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~---~~~l~~iEdP~~~~D----~~~~~~L~~~-----~~~p 356 (472)
++... -++||++++++++.++-+ +|++ |||||++.+| +++|++|+++ +++|
T Consensus 237 -------~~~~~---------~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vP 299 (408)
T TIGR01502 237 -------GTIGE---------AFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAE 299 (408)
T ss_pred -------CCccc---------ccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCce
Confidence 21111 136899999999766433 3787 9999999865 9999999998 4799
Q ss_pred EEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHHhhcCCC
Q 012041 357 LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDN--FIADLSVGLASGQ 434 (472)
Q Consensus 357 I~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s--~~a~lAva~~~~~ 434 (472)
|++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|++++++++++|+.++ .++|++++..+.+
T Consensus 300 I~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~~~~ 378 (408)
T TIGR01502 300 IVADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATGARQ 378 (408)
T ss_pred EEecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCc
Confidence 999996 7889999999999999999999999999999999999999999999998877899876 4568888888877
Q ss_pred c--ccCCCCCchhHHHhhHHHHHHHHh
Q 012041 435 I--KTGAPCRSERLAKYNQLLRIEEEL 459 (472)
Q Consensus 435 i--~~g~~~~~e~~~k~n~ll~i~~~l 459 (472)
+ |||.-...--+.++||+.|....+
T Consensus 379 ~l~kpg~g~d~~~~~~~ne~~r~~~~~ 405 (408)
T TIGR01502 379 VLAKPGMGVDEGMMIVKNEMNRVLALV 405 (408)
T ss_pred eEecCCCCcchhHHHHHHHHHHHHHHh
Confidence 7 788766656699999999987754
No 12
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=4.4e-46 Score=386.27 Aligned_cols=313 Identities=17% Similarity=0.211 Sum_probs=229.4
Q ss_pred ceEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCC
Q 012041 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (472)
Q Consensus 44 m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~ 122 (472)
|||++|+++.+ ..+++.++|+|+|+ |+ +||||+.. .+.+ ......+.+.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~----------~G~GE~~~---------~~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGV----------TGLGDATL---------NGRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCC----------eEEEeccc---------CCch-HHHHHHHHHHHHHHcCCC
Confidence 89999999765 33467899999999 99 89999732 1222 234455778899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCc
Q 012041 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (472)
Q Consensus 123 d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~ 202 (472)
||.+++++|+.|.+. ..++.+.....|++||||||||++||.+|+|||+||| |..++++|+ |++..+.
T Consensus 59 d~~~~e~~~~~l~~~-~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~r~~v~~--y~~~~~~------ 126 (404)
T PRK15072 59 DAHRIEDIWQYLYRG-AYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GASREGVMV--YGHANGR------ 126 (404)
T ss_pred ChhHHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEE--EEeCCCC------
Confidence 999999999999752 1222222345699999999999999999999999999 976677776 5432111
Q ss_pred ccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccC---CCCC-C--CCCCC----------------CCc
Q 012041 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNV---GDEG-G--FAPNV----------------QDN 260 (472)
Q Consensus 203 l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~---~~~G-~--~~~~~----------------~~~ 260 (472)
+. .+..+++.+...+||+++| +|+|...... ...+ + +.+.. +.+
T Consensus 127 -~~---------~~~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 192 (404)
T PRK15072 127 -DI---------DELLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFV 192 (404)
T ss_pred -CH---------HHHHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccHHHHHHH
Confidence 11 1234556666667887776 5655211000 0000 0 00100 011
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCc
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~ 340 (472)
.+.++++|+++ | +++.|++|+ |+.||.++|+++ .+.+++|++.|||||+++
T Consensus 193 ~~~v~avre~~---G--~~~~l~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~l~~iEeP~~~ 243 (404)
T PRK15072 193 PKLFEAVRNKF---G--FDLHLLHDV-----------------------HHRLTPIEAARL-GKSLEPYRLFWLEDPTPA 243 (404)
T ss_pred HHHHHHHHhhh---C--CCceEEEEC-----------------------CCCCCHHHHHHH-HHhccccCCcEEECCCCc
Confidence 23454444444 3 289999999 356889999988 455899999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChh
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETED 420 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~ 420 (472)
+|+++|++|++++++||++||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|+.+++++++.++..
T Consensus 244 ~d~~~~~~L~~~~~iPIa~dEs-~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~~~s~l 322 (404)
T PRK15072 244 ENQEAFRLIRQHTTTPLAVGEV-FNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPTDLSPV 322 (404)
T ss_pred cCHHHHHHHHhcCCCCEEeCcC-ccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCcccchH
Confidence 9999999999999999999997 568999999999999999999999999999999999999999999865434446777
Q ss_pred hHHHHHHHhhcCCC
Q 012041 421 NFIADLSVGLASGQ 434 (472)
Q Consensus 421 s~~a~lAva~~~~~ 434 (472)
+.++.++++...+.
T Consensus 323 ~~aa~~hlaaa~~~ 336 (404)
T PRK15072 323 CMAAALHFDLWVPN 336 (404)
T ss_pred HHHHHHHHHHhccc
Confidence 66555555544443
No 13
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.1e-46 Score=378.72 Aligned_cols=292 Identities=21% Similarity=0.237 Sum_probs=220.3
Q ss_pred eEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCC
Q 012041 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (472)
Q Consensus 45 ~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d 123 (472)
||++|++... +++|+|+|| |+ +||||+.. . ..+...+++.++|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi----------~G~GE~~~----------~---~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGT----------VGYANTTG----------G---PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCC----------eEEecCCC----------c---hHHHHHHHHHHHHHhCCCC
Confidence 7999998532 589999999 99 89999631 1 1223457788999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcc
Q 012041 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (472)
Q Consensus 124 ~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l 203 (472)
|.+++++|+.|++......++++...|++||||||||++||.+|+|||+||| |..++++|+ |.+.. +. .
T Consensus 51 p~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~~--y~~~~-~~---~-- 119 (341)
T cd03327 51 PSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIPA--YASGL-YP---T-- 119 (341)
T ss_pred chHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceEE--EEECC-CC---C--
Confidence 9999999999976422222233334699999999999999999999999999 977778886 43321 10 0
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEE
Q 012041 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (472)
Q Consensus 204 ~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~ 283 (472)
+. ++..+++.+...+||+++| .|+|... ..+ ..+++.+.+.++++|+++ | +++.|+
T Consensus 120 ~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~~~----~~~--~~~~~~d~~~v~avr~~~---g--~~~~l~ 175 (341)
T cd03327 120 DL---------DELPDEAKEYLKEGYRGMK----MRFGYGP----SDG--HAGLRKNVELVRAIREAV---G--YDVDLM 175 (341)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ECCCCCC----Ccc--hHHHHHHHHHHHHHHHHh---C--CCCcEE
Confidence 11 2234566666677887776 5544210 000 011223345555555544 3 289999
Q ss_pred EecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCcc
Q 012041 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (472)
Q Consensus 284 vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~ 363 (472)
+|+ |+.|+.++|+++ .+.+++|++.|||||++++|+++|++|++++++||++||+
T Consensus 176 vDa-----------------------n~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~- 230 (341)
T cd03327 176 LDC-----------------------YMSWNLNYAIKM-ARALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEH- 230 (341)
T ss_pred EEC-----------------------CCCCCHHHHHHH-HHHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccC-
Confidence 999 356789999988 5668999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhc
Q 012041 364 VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLA 431 (472)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~ 431 (472)
+.++++++++++.+++|++|+|++++||||++++++++|+++|+++ ++|.. ....+|++.++.
T Consensus 231 ~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~-~~h~~----~~a~~hlaaa~~ 293 (341)
T cd03327 231 EYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPV-VPHAS----QIYNYHFIMSEP 293 (341)
T ss_pred ccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCee-ccccH----HHHHHHHHHhCc
Confidence 5678999999999999999999999999999999999999999996 56742 335566666543
No 14
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.5e-45 Score=375.93 Aligned_cols=291 Identities=18% Similarity=0.209 Sum_probs=216.8
Q ss_pred eEEEEEEEEEecCC------------CCCeEEEEEEECCeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHH
Q 012041 45 KVKSVKARQIIDSR------------GNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNIN 112 (472)
Q Consensus 45 ~I~~V~~~~v~~~~------------~~~~v~V~I~tdG~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~ 112 (472)
||++|+++.+.... ....|+|+|+|+|+ +||||+ |.+. +....++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~~G~----------~G~Ge~----------~~~~---~~~~~i~ 57 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRAGGR----------TGLGYT----------YADA---AAAALVD 57 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEcCCc----------EEEeCC----------CChH---HHHHHHH
Confidence 67888876663110 12358899997788 899974 2222 3344577
Q ss_pred HhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEe
Q 012041 113 DILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNV 192 (472)
Q Consensus 113 ~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~ 192 (472)
+.++|.|+|+||.+++++|+.|++.......++....|++||||||||+.||.+|+|||+||| |. ++++|+ |.+
T Consensus 58 ~~~~p~liG~d~~~~~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG---g~-~~~v~~--y~s 131 (352)
T cd03328 58 GLLAPVVEGRDALDPPAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLG---RA-HDSVPV--YGS 131 (352)
T ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---CC-CCCeEE--EEe
Confidence 789999999999999999999976321111122334799999999999999999999999999 94 567777 543
Q ss_pred ecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 012041 193 INGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIE 272 (472)
Q Consensus 193 ~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~ 272 (472)
. +... .+ .++..+++.+...+||+++| +|+|. .+ +.+.+.++.+|+++
T Consensus 132 ~--~~~~---~~---------~e~~~~~a~~~~~~Gf~~~K----ikvg~-----------~~--~~d~~~v~~vRe~~- 179 (352)
T cd03328 132 G--GFTS---YD---------DDRLREQLSGWVAQGIPRVK----MKIGR-----------DP--RRDPDRVAAARRAI- 179 (352)
T ss_pred c--CCCC---CC---------HHHHHHHHHHHHHCCCCEEE----eecCC-----------CH--HHHHHHHHHHHHHc-
Confidence 2 2100 01 12345666666667887775 45431 11 22344454444444
Q ss_pred HhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhh
Q 012041 273 KAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSS 352 (472)
Q Consensus 273 ~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~ 352 (472)
| +++.|++|+ |+.||.++|+++ .+.+++|++.|||||++++|+++|++|+++
T Consensus 180 --G--~~~~l~vDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 180 --G--PDAELFVDA-----------------------NGAYSRKQALAL-ARAFADEGVTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred --C--CCCeEEEEC-----------------------CCCCCHHHHHHH-HHHHHHhCcchhhCCCChhhHHHHHHHHhh
Confidence 3 289999999 466889999988 556899999999999999999999999999
Q ss_pred --cCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 353 --VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 353 --~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
+++||++||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|++++ +|.. .+..+|++.++
T Consensus 232 ~~~~iPIa~gE~-~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~-~h~~----~~a~~hl~aa~ 305 (352)
T cd03328 232 GPAGMDIAAGEY-AYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLS-AHCA----PALHAHVACAV 305 (352)
T ss_pred CCCCCCEEeccc-ccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeec-cCch----HHHHHHHHHhC
Confidence 7899999997 56799999999999999999999999999999999999999999985 5632 34556666654
No 15
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1e-44 Score=368.19 Aligned_cols=327 Identities=16% Similarity=0.224 Sum_probs=227.5
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchH----HHHHHHHHHhhhhcccCCCCCCHHHHHHHH
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV----LNAVKNINDILGPKLVGVDIRDQAEVDAIM 134 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~----~~a~~~i~~~lap~LiG~d~~d~e~i~~~l 134 (472)
...|+|+|+|| |+ +||||+.+..-. .+.+++. ..+...|+++++|.|+|+||.+++.+|+.|
T Consensus 12 ~~~vlV~I~tddG~----------~G~GEa~~~~~~---~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m 78 (369)
T cd03314 12 GEAISVMLVLEDGQ----------VAVGDCAAVQYS---GAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVL 78 (369)
T ss_pred CcEEEEEEEECCCC----------EEEEeccccccc---CcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHH
Confidence 45799999999 99 899997532100 0122222 344567888899999999999999999999
Q ss_pred HHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCC---CcceeeeeEEEeecCCccCCCcccccceeec
Q 012041 135 LEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT---KELVMPVPAFNVINGGSHAGNNLAMQEFMIL 211 (472)
Q Consensus 135 ~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~---~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~ 211 (472)
++... .++....++++||||||||+.||.+|+|||+||| |. .+.+.++|+|.++++.. ..+
T Consensus 79 ~~~~~--~g~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLG---g~~~~g~~r~~v~~y~~~~~~~-------~~~---- 142 (369)
T cd03314 79 DKMRL--DGNRLHTAIRYGVSQALLDAVALAQRRTMAEVLC---DEYGLPLADEPVPIFAQSGDDR-------YIN---- 142 (369)
T ss_pred HHHhh--cCCcchhhHHHHHHHHHHHHHHHHhCCcHHHHcC---CcccCCCcccceEEEEEecCcc-------ccc----
Confidence 76321 1112334688999999999999999999999999 75 21233444465432110 000
Q ss_pred cCCcccHHHHHHHHHHH-HHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEeccccc
Q 012041 212 PVGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASE 290 (472)
Q Consensus 212 p~~~~~~~~a~~~~~~~-~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~ 290 (472)
..+..+++.+...++ |+.+| .| |....|+. .. ..+.++.++... ..| +++.|++|+|
T Consensus 143 --~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~~---~~~~~~~v~avr-~~G--~~~~l~vDaN--- 200 (369)
T cd03314 143 --VDKMILKGADVLPHALINNVE----EK-GPKGEKLL------EY---VKWLSDRIRKLG-RPG--YHPILHIDVY--- 200 (369)
T ss_pred --HHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------Hh---HHHHHHHHHHHh-hcC--CCCEEEEEcC---
Confidence 011223333332222 44443 23 43222210 00 112233333322 333 2799999994
Q ss_pred ccccCcceeecCCCCCCCCCCcc--CHHHHHHHHHHHHhhC-C--eeEEeCCCCcCC----HHHHHHHHhhc-----CCe
Q 012041 291 FFTKDGNYDLNFKKQPNDGAHVL--SAQSLGDLYKEFVRDF-P--IVSIEDPFDQDD----WSSWASLQSSV-----DIQ 356 (472)
Q Consensus 291 ~~~~~~~y~~~~~~~~~~~n~~~--s~~eai~~~~~~l~~~-~--l~~iEdP~~~~D----~~~~~~L~~~~-----~~p 356 (472)
+.| .|+| |+++|++++.. ++++ + +.|||||++++| +++|++|++++ ++|
T Consensus 201 -----~~w-----------~~~~~~~~~~A~~~~~~-Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iP 263 (369)
T cd03314 201 -----GTI-----------GQAFDPDPDRAADYLAT-LEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVR 263 (369)
T ss_pred -----Ccc-----------ccccCCCHHHHHHHHHH-HHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCce
Confidence 222 2457 89999998554 6664 4 789999999865 89999999994 799
Q ss_pred EEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhh--HHHHHHHhhcCCC
Q 012041 357 LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDN--FIADLSVGLASGQ 434 (472)
Q Consensus 357 I~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s--~~a~lAva~~~~~ 434 (472)
|++||+ ++++++++++++.+++|++|||++++||||++++++++|+++|++++++|+++|+.++ +++|++.++.+.+
T Consensus 264 Ia~dEs-~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lHlaaa~~~~~ 342 (369)
T cd03314 264 IVADEW-CNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALATRADQ 342 (369)
T ss_pred EEecCC-cCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHHHHHhcCCcc
Confidence 999997 6789999999999999999999999999999999999999999999887766788876 5668888888877
Q ss_pred c--ccCCCCCchhHHHhhHHHHH
Q 012041 435 I--KTGAPCRSERLAKYNQLLRI 455 (472)
Q Consensus 435 i--~~g~~~~~e~~~k~n~ll~i 455 (472)
+ |+|.-....-+.+-|++.|-
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
T cd03314 343 MLAKPGMGVDEGLMIVTNEMNRT 365 (369)
T ss_pred eeeCCCCCccchHHHHHHHHHHH
Confidence 7 57777666667777877664
No 16
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=1.1e-44 Score=370.79 Aligned_cols=288 Identities=17% Similarity=0.219 Sum_probs=221.0
Q ss_pred eEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCC
Q 012041 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (472)
Q Consensus 45 ~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d 123 (472)
||++|++..+ ..+++.++|+|+|| |+ +||||+.. .+. .......+++.++|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~----------~G~GE~~~---------~~~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGV----------TGLGDATL---------NGR-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCC----------eEEEeccc---------CCC-HHHHHHHHHHHHHHHcCCCC
Confidence 7999999544 33466799999999 99 89999731 111 22345567788999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcc
Q 012041 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (472)
Q Consensus 124 ~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l 203 (472)
|.+++.+|+.|.... .+..+.....|++||||||||+.||.+|+|||+||| |..++++|+ |++.. + .
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~--ya~~~-~------~ 125 (361)
T cd03322 59 ANRIEDIWQYLYRGA-YWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMV--YSHAS-G------R 125 (361)
T ss_pred hhHHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeE--EEeCC-C------C
Confidence 999999999997521 121122334689999999999999999999999999 976677877 54321 1 0
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEE
Q 012041 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (472)
Q Consensus 204 ~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~ 283 (472)
+. .+..+++.+...+||+++| .| ..+.++++|+++ | +++.|+
T Consensus 126 ~~---------~~~~~~a~~~~~~Gf~~~K----iK--------------------v~~~v~avre~~---G--~~~~l~ 167 (361)
T cd03322 126 DI---------PELLEAVERHLAQGYRAIR----VQ--------------------LPKLFEAVREKF---G--FEFHLL 167 (361)
T ss_pred CH---------HHHHHHHHHHHHcCCCeEe----eC--------------------HHHHHHHHHhcc---C--CCceEE
Confidence 11 1233555555556776665 22 034555555544 2 279999
Q ss_pred EecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCcc
Q 012041 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (472)
Q Consensus 284 vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~ 363 (472)
+|+ |+.||.++|++++ +.+++|++.|||||++++|+++|++|++++++||++||+
T Consensus 168 vDa-----------------------N~~w~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~- 222 (361)
T cd03322 168 HDV-----------------------HHRLTPNQAARFG-KDVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEV- 222 (361)
T ss_pred EEC-----------------------CCCCCHHHHHHHH-HHhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccC-
Confidence 999 4668899999884 558999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 364 VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
+.++++++++++.+++|++|+|++++||||++++++++|+++|++++++++..++.++.++.++++.
T Consensus 223 ~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa 289 (361)
T cd03322 223 FNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDL 289 (361)
T ss_pred CcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999998654443467776655555544
No 17
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=1.2e-44 Score=373.32 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=220.0
Q ss_pred ceEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCC
Q 012041 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (472)
Q Consensus 44 m~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~ 122 (472)
|||++|+++.+ . ..+++|+|+|+ |+ +||||+.. .+ ........+ +.++|.|+|+
T Consensus 1 mkI~~i~~~~~-~---~~~vlV~v~t~dG~----------~G~GE~~~---------~~-~~~~~~~~~-~~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRV-P---PRWLFLKIETDEGI----------VGWGEPVV---------EG-RARTVEAAV-HELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEE-C---CCEEEEEEEECCCC----------eEEecccc---------CC-chHHHHHHH-HHHHHHhCCC
Confidence 89999999876 2 13589999999 99 89999732 11 122333334 4699999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCc
Q 012041 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (472)
Q Consensus 123 d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~ 202 (472)
||.+++++|+.|+.. ...+++.....|++||||||||+.||.+|+|||+||| |+.++++|+ |.+++++
T Consensus 56 d~~~~~~~~~~l~~~-~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i~~--~~~~~~~------ 123 (382)
T PRK14017 56 DPRRIEDHWQVMYRG-GFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRIRV--YSWIGGD------ 123 (382)
T ss_pred CHHHHHHHHHHHHHh-cccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeeE--eEeCCCC------
Confidence 999999999998652 1112222234689999999999999999999999999 976677877 4333211
Q ss_pred ccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEE
Q 012041 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (472)
Q Consensus 203 l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l 282 (472)
+. ++..+++.+...+||+.+| .|.|.. .+..++ ..+++.+.+.++++|+++ | +++.|
T Consensus 124 -~~---------~~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g--~~~~l 180 (382)
T PRK14017 124 -RP---------ADVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---G--PEIGI 180 (382)
T ss_pred -CH---------HHHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---C--CCCeE
Confidence 11 2234566666667787775 454310 000000 001122344455554444 3 28999
Q ss_pred EEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCc
Q 012041 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (472)
Q Consensus 283 ~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~ 362 (472)
++|+ |+.||.++|++++ +.++++++.|||||++++|+++|++|++++++||++||+
T Consensus 181 ~vDa-----------------------N~~w~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs 236 (382)
T PRK14017 181 GVDF-----------------------HGRVHKPMAKVLA-KELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGER 236 (382)
T ss_pred EEEC-----------------------CCCCCHHHHHHHH-HhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCc
Confidence 9999 4668899999884 568999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 363 LVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 363 ~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
+.++++++++++.+++|++|+|++++||||++++++++|+++|++++++++ .+ .++.+++++++.
T Consensus 237 -~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~-~i~~aa~~hl~a 301 (382)
T PRK14017 237 -LFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP-LG-PIALAACLQVDA 301 (382)
T ss_pred -cCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC-CC-HHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999865543 34 455444444433
No 18
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1e-43 Score=363.14 Aligned_cols=294 Identities=20% Similarity=0.250 Sum_probs=223.9
Q ss_pred ceEEEEEEEEEec--------CC----CCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHH
Q 012041 44 AKVKSVKARQIID--------SR----GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (472)
Q Consensus 44 m~I~~V~~~~v~~--------~~----~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~ 110 (472)
|||++|+++.+.- +. ....|+|+|+|| |+ +||||+. .|.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~----------~G~Ge~~--------~~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGV----------TGHSYLF--------TYTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCC----------eEEEeee--------cCCCCcHHHHHHH
Confidence 7999999988741 11 135689999999 99 8999853 2455555555554
Q ss_pred HHHhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEE
Q 012041 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (472)
Q Consensus 111 i~~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~ 190 (472)
+ +.++|.|+|+++ +++++|+.+.+......++++...|++||||||||+.||.+|+|||+||| |.. +++|+ |
T Consensus 63 ~-~~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~~-~~v~~--y 134 (355)
T cd03321 63 L-DDMAALLVGEPL-APAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GNP-RPVQA--Y 134 (355)
T ss_pred H-HHHHHHhCCCCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-CCeeE--E
Confidence 4 469999999986 77888888765321111122335799999999999999999999999999 974 56665 5
Q ss_pred EeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHH
Q 012041 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (472)
Q Consensus 191 ~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~a 270 (472)
.+++.+ + .++..+++.+..++||+++| .|+|. ++.+.+.+.++++|++
T Consensus 135 ~s~~~~-------~---------~~~~~~~a~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v~air~~ 182 (355)
T cd03321 135 DSHGLD-------G---------AKLATERAVTAAEEGFHAVK----TKIGY------------PTADEDLAVVRSIRQA 182 (355)
T ss_pred EeCCCC-------h---------HHHHHHHHHHHHHhhhHHHh----hhcCC------------CChHhHHHHHHHHHHh
Confidence 443111 0 12345677777788998887 55542 1223345555555555
Q ss_pred HHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHH
Q 012041 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (472)
Q Consensus 271 v~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~ 350 (472)
+ | +++.|++|+ |+.|+.++|++++ +.+++|++.|||||++++|+++|++|+
T Consensus 183 ~---g--~~~~l~vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~ 233 (355)
T cd03321 183 V---G--DGVGLMVDY-----------------------NQSLTVPEAIERG-QALDQEGLTWIEEPTLQHDYEGHARIA 233 (355)
T ss_pred h---C--CCCEEEEeC-----------------------CCCcCHHHHHHHH-HHHHcCCCCEEECCCCCcCHHHHHHHH
Confidence 4 3 289999999 3568899999885 557999999999999999999999999
Q ss_pred hhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 351 ~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
+++++||++||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|++++ +|... +..+|++.++
T Consensus 234 ~~~~ipia~~E~-~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~-~h~~~----~~~~h~~aa~ 307 (355)
T cd03321 234 SALRTPVQMGEN-WLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS-SHLFQ----EISAHLLAVT 307 (355)
T ss_pred HhcCCCEEEcCC-CcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec-ccchH----HHHHHHHHhC
Confidence 999999999997 57899999999999999999999999999999999999999999974 66432 2457777664
No 19
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=6.7e-44 Score=366.31 Aligned_cols=291 Identities=21% Similarity=0.218 Sum_probs=221.9
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhc
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~ 138 (472)
.+.++|+|+|+ |+ +||||+.++. .|+|++++...+...+++.++|.|+|+|+.+++.+|+.|....
T Consensus 27 ~~~~~V~v~t~~G~----------~G~Ge~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 93 (368)
T TIGR02534 27 QTLVLVRIRTEDGV----------IGYGEGTTIG---GLWWGGESPETIKANIDTYLAPVLVGRDATEIAAIMADLEKVV 93 (368)
T ss_pred ccEEEEEEEECCCC----------eEEEecCCCC---CCccCCCCHHHHHHHHHHhhHHHHcCCChhhHHHHHHHHHHHh
Confidence 46789999999 99 8999985432 1246677777767778888999999999999999988886531
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccH
Q 012041 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (472)
Q Consensus 139 ~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~ 218 (472)
. . ...|++|||+||||+.||.+|+|||+||| |..++++|+. .+++.+ +. .+.+
T Consensus 94 ~---~---~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~~~--~~~~~~-------~~---------~~~~ 146 (368)
T TIGR02534 94 A---G---NRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVDVT--WTLASG-------DT---------DRDI 146 (368)
T ss_pred c---C---CchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceEEE--EEEeCC-------CH---------HHHH
Confidence 1 1 13589999999999999999999999999 9766778873 222211 00 1123
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcc
Q 012041 219 AEALRMG-SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (472)
Q Consensus 219 ~~a~~~~-~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~ 297 (472)
+++.+.. .+||+++| +|+|. .+.+.+.+.++++|+++ | .++.|++|+
T Consensus 147 ~~~~~~~~~~Gf~~~K----iKvg~------------~~~~~d~~~v~~~re~~---g--~~~~l~~Da----------- 194 (368)
T TIGR02534 147 AEAEERIEEKRHRSFK----LKIGA------------RDPADDVAHVVAIAKAL---G--DRASVRVDV----------- 194 (368)
T ss_pred HHHHHHHHhcCcceEE----EEeCC------------CCcHHHHHHHHHHHHhc---C--CCcEEEEEC-----------
Confidence 3333333 24776665 56542 11222344555444444 3 279999999
Q ss_pred eeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 298 y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
|+.||.++|+++ .+.++++++.|||||++++|++++++|++++++||++||+ ++++++++++++.+
T Consensus 195 ------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~-~~~~~~~~~~~~~~ 260 (368)
T TIGR02534 195 ------------NAAWDERTALHY-LPQLADAGVELIEQPTPAENREALARLTRRFNVPIMADES-VTGPADALAIAKAS 260 (368)
T ss_pred ------------CCCCCHHHHHHH-HHHHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCcc-cCCHHHHHHHHHhC
Confidence 456889999988 4568999999999999999999999999999999999997 67899999999999
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
++|++|+|++++||||++++++.+|+++|+++++++ +.|+.++.++.++++...+.+..
T Consensus 261 ~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~-~~~s~i~~aa~~h~~a~~~~~~~ 319 (368)
T TIGR02534 261 AADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGT-MLEGPIGTIASAHFFATFPALSF 319 (368)
T ss_pred CCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeec-chhhHHHHHHHHHHHHhCCCCcc
Confidence 999999999999999999999999999999997665 45888876666666554444433
No 20
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.3e-44 Score=365.81 Aligned_cols=304 Identities=18% Similarity=0.218 Sum_probs=230.5
Q ss_pred eEEEEEEEEEecC--------C----CCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHH
Q 012041 45 KVKSVKARQIIDS--------R----GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (472)
Q Consensus 45 ~I~~V~~~~v~~~--------~----~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i 111 (472)
+|++|+++.+... . .+..++|+|+|+ |+ +||||+.++.. |.|.+++...+...+
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~l 67 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGV----------VGIGEATTPGG---PAWGGESPETIKAII 67 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCC----------eEEEecCCCCC---CccCCCCHHHHHHHH
Confidence 5777777665311 1 245689999999 98 89999865421 246666666667778
Q ss_pred HHhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEE
Q 012041 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (472)
Q Consensus 112 ~~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~ 191 (472)
++.++|.|+|+|+.+++.+|+.|.+... + ...|++||||||||+.||.+|+|||+||| |..++++|+ |.
T Consensus 68 ~~~~~~~l~G~~~~~~~~~~~~l~~~~~----~--~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v~~--~~ 136 (365)
T cd03318 68 DRYLAPLLIGRDATNIGAAMALLDRAVA----G--NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSLPV--AW 136 (365)
T ss_pred HHhhHHHHcCCChHHHHHHHHHHHHHhc----C--CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCceEE--EE
Confidence 8889999999999999999988875211 1 23589999999999999999999999999 976677877 43
Q ss_pred eecCCccCCCcccccceeeccCCcccHHHHHHHHHHH-HHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHH
Q 012041 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (472)
Q Consensus 192 ~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~-~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~a 270 (472)
++..+ +. .+..+++.+...+| |+++| .|+|. .+.+.+.+.++++|++
T Consensus 137 ~~~~~-------~~---------~~~~~~~~~~~~~G~f~~~K----iKvg~------------~~~~~d~~~v~avr~~ 184 (365)
T cd03318 137 TLASG-------DT---------ERDIAEAEEMLEAGRHRRFK----LKMGA------------RPPADDLAHVEAIAKA 184 (365)
T ss_pred EEeCC-------CH---------HHHHHHHHHHHhCCCceEEE----EEeCC------------CChHHHHHHHHHHHHH
Confidence 32211 00 12334555566677 77665 56541 1112234444444444
Q ss_pred HHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHH
Q 012041 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (472)
Q Consensus 271 v~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~ 350 (472)
+ | +++.|++|+ |+.||.++|+++ .+.++++++.|||||++++|++++++|+
T Consensus 185 ~---g--~~~~l~iDa-----------------------N~~~~~~~A~~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~ 235 (365)
T cd03318 185 L---G--DRASVRVDV-----------------------NQAWDESTAIRA-LPRLEAAGVELIEQPVPRENLDGLARLR 235 (365)
T ss_pred c---C--CCcEEEEEC-----------------------CCCCCHHHHHHH-HHHHHhcCcceeeCCCCcccHHHHHHHH
Confidence 3 3 279999999 356788999988 4568999999999999999999999999
Q ss_pred hhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 351 ~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
+++++||++||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|++++++| +.|+.++.++.++++.
T Consensus 236 ~~~~~pia~dE~-~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~-~~~s~i~~aa~~hlaa 313 (365)
T cd03318 236 SRNRVPIMADES-VSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGT-MLESSIGTAASAHLFA 313 (365)
T ss_pred hhcCCCEEcCcc-cCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecC-cchhHHHHHHHHHHHH
Confidence 999999999996 67899999999999999999999999999999999999999999998665 4588877655555554
Q ss_pred cCCCc
Q 012041 431 ASGQI 435 (472)
Q Consensus 431 ~~~~i 435 (472)
..+.+
T Consensus 314 a~~~~ 318 (365)
T cd03318 314 TLPSL 318 (365)
T ss_pred hCCCC
Confidence 44444
No 21
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.5e-43 Score=361.48 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=220.5
Q ss_pred eEEEEEEEEEecCCCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCC
Q 012041 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (472)
Q Consensus 45 ~I~~V~~~~v~~~~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d 123 (472)
+|++|+++.+ + .+.++|+|+|+ |+ +||||+... +. ..++...+++ ++|.|+|+|
T Consensus 1 ~I~~i~~~~~-~---~~~~~V~i~~~~G~----------~G~GE~~~~---------~~-~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV-P---PRWLFVKIETDEGV----------VGWGEPTVE---------GK-ARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE-C---CCEEEEEEEECCCC----------EEEeccccC---------Cc-chHHHHHHHH-HHHHhCCCC
Confidence 6899998766 2 35799999999 99 899997421 11 1233444555 999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcc
Q 012041 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (472)
Q Consensus 124 ~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l 203 (472)
|.+++++|+.|... ...+++....+|++||||||||+.||.+|+|||+||| |..+.++|+ |.+++++
T Consensus 56 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~--~~~~~~~------- 122 (352)
T cd03325 56 PMNIEHHWQVMYRG-GFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRV--YSWIGGD------- 122 (352)
T ss_pred HHHHHHHHHHHHHh-cCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEE--EEeCCCC-------
Confidence 99999999998642 1122222224689999999999999999999999999 976677777 4333211
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEE
Q 012041 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (472)
Q Consensus 204 ~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~ 283 (472)
+. ++..+++.+...+||+.+| .|+|.. ..+.+.-....++++.++...+..| +++.|+
T Consensus 123 ~~---------~~~~~~~~~~~~~Gf~~~K----iKvg~~-------~~~~~~~~~~~~D~~~i~avr~~~g--~~~~l~ 180 (352)
T cd03325 123 RP---------SDVAEAARARREAGFTAVK----MNATEE-------LQWIDTSKKVDAAVERVAALREAVG--PDIDIG 180 (352)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ecCCCC-------cccCCCHHHHHHHHHHHHHHHHhhC--CCCEEE
Confidence 11 1223455555566787665 565521 0111000011233444444333333 389999
Q ss_pred EecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCcc
Q 012041 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (472)
Q Consensus 284 vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~ 363 (472)
+|+ |+.||.++|++++ +.++++++.|||||++++|+++|++|++++++||++||+
T Consensus 181 vDa-----------------------N~~~~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs- 235 (352)
T cd03325 181 VDF-----------------------HGRVSKPMAKDLA-KELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGER- 235 (352)
T ss_pred EEC-----------------------CCCCCHHHHHHHH-HhccccCCcEEECCCCccCHHHHHHHHHhCCCCEEeccc-
Confidence 999 4567899999884 558999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcC
Q 012041 364 VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLAS 432 (472)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~ 432 (472)
+.+++++.++++.+++|++|+|++++||+|++++++++|+++|++++ +|.+ ++.++.+++++++...
T Consensus 236 ~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~-~h~~-~s~i~~~a~~hlaa~~ 302 (352)
T cd03325 236 LFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALA-PHCP-LGPIALAASLHVDAST 302 (352)
T ss_pred ccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEe-ccCC-CChHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999986 5643 7766655555554433
No 22
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.7e-43 Score=360.29 Aligned_cols=288 Identities=20% Similarity=0.233 Sum_probs=224.7
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhc
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~ 138 (472)
+..+.|+|+|+ |+ +||||+.++.- |.|.+++...+...+++.+.|.|+|+++.+++++|+.|.+..
T Consensus 24 ~~~~~Vrv~t~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~ 90 (354)
T cd03317 24 REFLIVELTDEEGI----------TGYGEVVAFEG---PFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLAPIK 90 (354)
T ss_pred eeEEEEEEEECCCC----------eEEEecCCCCC---CcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 34589999998 99 89999865321 246777777777888888999999999999999999887632
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccH
Q 012041 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (472)
Q Consensus 139 ~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~ 218 (472)
+ ...|++||||||||+.||.+|+|||+||| |. ++++|+ |.+++.+ +. .++..
T Consensus 91 ~-------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG---g~-~~~v~~--~~s~~~~-------~~--------~~~~~ 142 (354)
T cd03317 91 G-------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG---GT-RDSIPV--GVSIGIQ-------DD--------VEQLL 142 (354)
T ss_pred C-------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC---CC-CCeEEe--eEEEeCC-------Cc--------HHHHH
Confidence 1 23689999999999999999999999999 84 567776 4433211 00 02334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcce
Q 012041 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (472)
Q Consensus 219 ~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y 298 (472)
+++.+...+||+++| +|+| + +.+.+.++.+|+++ |++.|++|+
T Consensus 143 ~~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~------g~~~l~lDa------------ 185 (354)
T cd03317 143 KQIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF------PDIPLMADA------------ 185 (354)
T ss_pred HHHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC------CCCeEEEEC------------
Confidence 556666666777665 4432 1 12345555555543 478999999
Q ss_pred eecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCC
Q 012041 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (472)
Q Consensus 299 ~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a 378 (472)
|+.||.+++. + .+.+++|++.|||||++++|++++++|++++++||++||+ +.++++++++++.++
T Consensus 186 -----------N~~~~~~~a~-~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs-~~~~~~~~~~~~~~~ 251 (354)
T cd03317 186 -----------NSAYTLADIP-L-LKRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDES-IQSAEDARKAIELGA 251 (354)
T ss_pred -----------CCCCCHHHHH-H-HHHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCc-cCCHHHHHHHHHcCC
Confidence 3567788874 5 4668999999999999999999999999999999999996 678999999999999
Q ss_pred CCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 379 CNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 379 ~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+|++|||++++||||++++++++|+++|+++++|++ .|+.++.+++++++.......++.+
T Consensus 252 ~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~-~es~l~~~a~~hla~~~~~~~~~~~ 312 (354)
T cd03317 252 CKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGM-LESGIGRAHNVALASLPNFTYPGDI 312 (354)
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCc-ccchHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999988774 6998887777777644443334444
No 23
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=5.3e-43 Score=353.44 Aligned_cols=287 Identities=16% Similarity=0.162 Sum_probs=224.0
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhc
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~ 138 (472)
+..+.|+|+|| |+ +||||+.+++- |.|.+++..++...+.+.++|.|+| ++.+++++++.|....
T Consensus 21 ~~~~lV~v~~~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~ 86 (324)
T TIGR01928 21 RDCLIIELIDDKGN----------AGFGEVVAFQT---PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVRSLK 86 (324)
T ss_pred CcEEEEEEEECCCC----------eEEEeccccCC---CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcc
Confidence 46689999999 99 89999864321 2366677777777788888999999 9999999998886421
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccH
Q 012041 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (472)
Q Consensus 139 ~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~ 218 (472)
+ ...|++||||||||+.||..|+|||+||| |. ++++|+ |.+++.+ .+++..
T Consensus 87 -----~--~~~a~said~AlwDl~gk~~g~Pl~~llG---g~-~~~i~~--y~~~~~~----------------~~~~~~ 137 (324)
T TIGR01928 87 -----G--TPMAKAGLEMALWDMYHKLPSFSLAYGQG---KL-RDKAPA--GAVSGLA----------------NDEQML 137 (324)
T ss_pred -----C--CcHHHHHHHHHHHHHHHhhhCCcHHHHhC---CC-CCeEEE--eEEcCCC----------------CHHHHH
Confidence 1 23689999999999999999999999999 84 567766 5442111 112345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcce
Q 012041 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (472)
Q Consensus 219 ~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y 298 (472)
+++.+...+||+.+| .|+| + +.+.+.++.+|+++ +++.|++|+
T Consensus 138 ~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~------~~~~l~vDa------------ 180 (324)
T TIGR01928 138 KQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF------PQIPLVIDA------------ 180 (324)
T ss_pred HHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC------CCCcEEEEC------------
Confidence 666666677887665 4532 1 12345555555543 478999999
Q ss_pred eecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCC
Q 012041 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (472)
Q Consensus 299 ~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a 378 (472)
|+.|+.+++ .+ .+.+++|++.|||||++++|++++++|++++++||++||+ +.++++++++++.++
T Consensus 181 -----------N~~~~~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs-~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 181 -----------NESYDLQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTITPICLDES-ITSLDDARNLIELGN 246 (324)
T ss_pred -----------CCCCCHHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCC-cCCHHHHHHHHHcCC
Confidence 355777775 45 5668999999999999999999999999999999999996 678999999999999
Q ss_pred CCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 379 CNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 379 ~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
+|++|+|++++||||++++++++|+++|++++++++ .|++++.++.++++...+...++...
T Consensus 247 ~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~-~es~i~~aa~~hla~~~~~~~~~~~~ 308 (324)
T TIGR01928 247 VKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGM-LETGISRAFNVALASLGGNDYPGDVS 308 (324)
T ss_pred CCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcce-EcccHHHHHHHHHHhCCCCCCCCCCC
Confidence 999999999999999999999999999999988764 58888776666666666666666543
No 24
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.3e-42 Score=357.03 Aligned_cols=285 Identities=17% Similarity=0.167 Sum_probs=207.9
Q ss_pred CCeEEEEEEEC-CeeeeeccCCC-ccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCC----------CH
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGA-STGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR----------DQ 127 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~-~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~----------d~ 127 (472)
..+++|+|+|| |. .|. .+||||+.. +.... ...+++.++|.|+|+||. ++
T Consensus 26 ~~~~lV~v~td~~~------~G~~~~G~Ge~~~----------~~~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~~~~~ 87 (385)
T cd03326 26 LTTSLVAVVTDVVR------DGRPVVGYGFDSI----------GRYAQ--GGLLRERFIPRLLAAAPDSLLDDAGGNLDP 87 (385)
T ss_pred cEEEEEEEEecccc------CCCceeEEEeccC----------CchhH--HHHHHHHHHHHhcCCChHHhhhcccccCCH
Confidence 35689999999 44 331 389999731 11111 234778899999999999 45
Q ss_pred HHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCC-----cceeeeeEEEeecCCccCCCc
Q 012041 128 AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK-----ELVMPVPAFNVINGGSHAGNN 202 (472)
Q Consensus 128 e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~-----~~~vp~~~~~~~~gg~~~~~~ 202 (472)
+++|+.|.... ...++.....|++||||||||++||.+|+|||+||| |+. ++++|+ |.+. +...+
T Consensus 88 ~~l~~~~~~~~-~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~~~~~~~~~v~~--y~~~--~~~~~-- 157 (385)
T cd03326 88 ARAWAAMMRNE-KPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA---RRYGRGQADPRVPV--YAAG--GYYYP-- 157 (385)
T ss_pred HHHHHHHHhcC-ccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CcccCCCCCCeEEE--EEec--CCCCC--
Confidence 99999997521 111122234699999999999999999999999999 863 356666 5431 21100
Q ss_pred ccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEE
Q 012041 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (472)
Q Consensus 203 l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l 282 (472)
. ...++..+++.+..++||+++| .|+|. .+.+.+.+.++.+|++ +| +++.|
T Consensus 158 --~------~~~~~~~~~a~~~~~~Gf~~~K----ikvg~------------~~~~~di~~v~avRe~---~G--~~~~l 208 (385)
T cd03326 158 --G------DDLGRLRDEMRRYLDRGYTVVK----IKIGG------------APLDEDLRRIEAALDV---LG--DGARL 208 (385)
T ss_pred --C------CCHHHHHHHHHHHHHCCCCEEE----EeCCC------------CCHHHHHHHHHHHHHh---cC--CCCeE
Confidence 0 0012234566666667787665 45441 1112234445444444 33 38999
Q ss_pred EEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCc
Q 012041 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (472)
Q Consensus 283 ~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~ 362 (472)
++|+ |+.||.++|+++ .+.+++|++.|||||++++|+++|++|++++++||++||+
T Consensus 209 ~vDa-----------------------N~~w~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs 264 (385)
T cd03326 209 AVDA-----------------------NGRFDLETAIAY-AKALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGEN 264 (385)
T ss_pred EEEC-----------------------CCCCCHHHHHHH-HHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCC
Confidence 9999 356789999988 5568999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHHcCCC----CEEEeccCCcccHHHHHHHHHHHHHcCCc--EEecCCCCCChhhHHHHHHHhh
Q 012041 363 LVTNPKRIAEAIQKKSC----NGLLLKVNQIGTVTESIQAALDSKSAGWG--VMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 363 ~~~~~~~~~~~i~~~a~----d~i~ik~~k~GGitea~~ia~~A~a~g~~--~~v~~~~~Et~~s~~a~lAva~ 430 (472)
+.++++++++++.+++ |++|||++++||||++++++++|+++|++ ++++|. .....+|++.+.
T Consensus 265 -~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~----~~~a~lhl~aa~ 333 (385)
T cd03326 265 -LFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHG----GHLMSLHIAAGL 333 (385)
T ss_pred -cCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCCceeecch----HHHHHHHHHhcC
Confidence 6789999999999988 99999999999999999999999999998 357784 234456666654
No 25
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=5.9e-43 Score=360.11 Aligned_cols=272 Identities=16% Similarity=0.187 Sum_probs=203.5
Q ss_pred CeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcC
Q 012041 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (472)
Q Consensus 61 ~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~ 139 (472)
.+++|+|+|| |+ +||||+.. ++ .....+++.|+|.|+|+||.+++.+|+.|++...
T Consensus 57 ~~vlVrI~td~G~----------~G~Ge~~~----------~~---~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~ 113 (394)
T PRK15440 57 GTLVVEVEAENGQ----------VGFAVSTA----------GE---MGAFIVEKHLNRFIEGKCVSDIELIWDQMLNATL 113 (394)
T ss_pred ceEEEEEEECCCC----------EEEEeCCC----------cH---HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhcc
Confidence 4689999999 99 89998521 11 2234577889999999999999999999976322
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 140 ~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
....+++..+|++||||||||+.||.+|+|||+||| |..++++|+ |++ ++. + +
T Consensus 114 ~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~--~~~--------------~------~ 166 (394)
T PRK15440 114 YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDELQF--YAT--GAR--------------P------D 166 (394)
T ss_pred ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCeeEE--Eec--CCC--------------h------H
Confidence 121223335699999999999999999999999999 976778876 532 110 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCccee
Q 012041 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (472)
Q Consensus 220 ~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~ 299 (472)
.+. .+||+++| +|+|..+ .+|. .+++.+.++++.+|+++ | +++.|++|+
T Consensus 167 ~a~---~~Gf~~~K----ik~~~g~----~~g~--~~~~~di~~v~avReav---G--~d~~l~vDa------------- 215 (394)
T PRK15440 167 LAK---EMGFIGGK----MPLHHGP----ADGD--AGLRKNAAMVADMREKV---G--DDFWLMLDC------------- 215 (394)
T ss_pred HHH---hCCCCEEE----EcCCcCc----ccch--HHHHHHHHHHHHHHHhh---C--CCCeEEEEC-------------
Confidence 111 24677665 4543100 0110 11222344454444444 3 289999999
Q ss_pred ecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcC
Q 012041 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 300 ~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
|+.||.++|+++ .+.+++|++.|||||++++|+++|++|+++++ +||++||+ ..++++++++++.+
T Consensus 216 ----------N~~~~~~~Ai~~-~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~-~~~~~~~~~li~~~ 283 (394)
T PRK15440 216 ----------WMSLDVNYATKL-AHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEH-EATLQGFRTLLEMG 283 (394)
T ss_pred ----------CCCCCHHHHHHH-HHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCC-ccCHHHHHHHHHcC
Confidence 356889999988 56689999999999999999999999999976 88999997 56789999999999
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
++|++|+|+++|||||+++||+++|+++|+++ ++|.+ ....+|++++.
T Consensus 284 a~Divq~d~~~~GGit~~~kia~lA~a~gi~~-~pH~~----~~~~~hl~aa~ 331 (394)
T PRK15440 284 CIDIIQPDVGWCGGLTELVKIAALAKARGQLV-VPHGS----SVYSHHFVITR 331 (394)
T ss_pred CCCEEeCCccccCCHHHHHHHHHHHHHcCCee-cccCH----HHHHHHHHhhC
Confidence 99999999999999999999999999999996 67742 23455666554
No 26
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=357.07 Aligned_cols=281 Identities=22% Similarity=0.259 Sum_probs=212.0
Q ss_pred CeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcC
Q 012041 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (472)
Q Consensus 61 ~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~ 139 (472)
..+.|+|+|| |+ +||||+....-. .+. ..... ..+++.|+|+||.+++.+|+.+....
T Consensus 30 ~~v~v~i~~d~G~----------~G~GE~~~~~~~---~~~----~~~~~---~~~~~~l~g~d~~~i~~~~~~~~~~~- 88 (372)
T COG4948 30 TRVIVEITTDDGI----------VGWGEAVPGGRA---RYG----EEAEA---VLLAPLLIGRDPFDIERIWQKLYRAG- 88 (372)
T ss_pred eEEEEEEEECCCc----------eeeccccCcccc---cch----hhhhH---HHHHHHhcCCCHHHHHHHHHHHHHhc-
Confidence 3699999999 99 899998653211 111 11111 16899999999999999999988632
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 140 ~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
..+.+++..+|++|||+||||+.||.+|+|||+||| |..++++++ |++..++ . ...+...
T Consensus 89 ~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~--y~~~~~~------~---------~~~e~~~ 148 (372)
T COG4948 89 FARRGGITMAAISAVDIALWDLAGKALGVPVYKLLG---GKVRDEVRA--YASGGGG------E---------DPEEMAA 148 (372)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CceeeeEEE--EEecCCC------C---------CCHHHHH
Confidence 222233445799999999999999999999999999 988767766 5543211 0 0112333
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCC-CcEEEEecccccccccCcc
Q 012041 220 EALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGN 297 (472)
Q Consensus 220 ~a~~~~~-~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g-~i~l~vD~~a~~~~~~~~~ 297 (472)
++.+... +||+.+| .|.|. .+.+.+.++++++|+++ | ++.|++|+
T Consensus 149 ~~~~~~~~~G~~~~K----lk~g~------------~~~~~d~~~v~avRe~~------g~~~~l~iDa----------- 195 (372)
T COG4948 149 EAARALVELGFKALK----LKVGV------------GDGDEDLERVRALREAV------GDDVRLMVDA----------- 195 (372)
T ss_pred HHHHHHHhcCCceEE----ecCCC------------CchHHHHHHHHHHHHHh------CCCceEEEeC-----------
Confidence 3334333 5787665 55442 11123456676666666 6 89999999
Q ss_pred eeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 298 y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
|++||.++++++ .+.++++++.|||||++++|++++++|++.+.+||++||+ +.+.++++++++.+
T Consensus 196 ------------n~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~PIa~gEs-~~~~~~~~~l~~~~ 261 (372)
T COG4948 196 ------------NGGWTLEEAIRL-ARALEEYGLEWIEEPLPPDDLEGLRELRAATSTPIAAGES-VYTRWDFRRLLEAG 261 (372)
T ss_pred ------------CCCcCHHHHHHH-HHHhcccCcceEECCCCccCHHHHHHHHhcCCCCEecCcc-cccHHHHHHHHHcC
Confidence 356788899987 5668999999999999999999999999998899999997 67899999999999
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcC
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLAS 432 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~ 432 (472)
++|++|||++++||||++++|+++|+.+++.+ .+|. ++.++.++.++++...
T Consensus 262 a~div~~d~~~~GGite~~kia~~A~~~~~~v-~~h~--~~~i~~aa~~hla~~~ 313 (372)
T COG4948 262 AVDIVQPDLARVGGITEALKIAALAEGFGVMV-GPHV--EGPISLAAALHLAAAL 313 (372)
T ss_pred CCCeecCCccccCCHHHHHHHHHHHHHhCCce-eccC--chHHHHHHHHHHhhcc
Confidence 99999999999999999999999999888875 4664 3777766666666544
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=2.8e-42 Score=353.22 Aligned_cols=304 Identities=19% Similarity=0.219 Sum_probs=221.9
Q ss_pred eEEEEEEEEEecC--------CCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhh
Q 012041 45 KVKSVKARQIIDS--------RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDIL 115 (472)
Q Consensus 45 ~I~~V~~~~v~~~--------~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~l 115 (472)
||++|+++.+-.. ..+..++|+|+|+ |+ +||||+.++. . .......|++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~----------~G~GE~~~~~-------~---~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGI----------TGWGEAYPGG-------R---PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCC----------EEEEeccCCC-------C---chHHHHHHHHHH
Confidence 5888888777421 2356799999999 99 8999985421 1 234455677779
Q ss_pred hhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecC
Q 012041 116 GPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVING 195 (472)
Q Consensus 116 ap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~g 195 (472)
+|.|+|+++.+++++|+.|.+.......+.....|++|||+||||+.||.+|+|||+||| |..+.++|+ |.++++
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~~~v~~--~~~~~~ 135 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVRDRVRV--YASGGG 135 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccCCceee--EEecCC
Confidence 999999999999999999976321110011224689999999999999999999999999 875567776 544321
Q ss_pred CccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhC
Q 012041 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275 (472)
Q Consensus 196 g~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g 275 (472)
.. .+. .+..+++.+...+||+.+| .|.|..... ....+.+.+.++.+|+++ |
T Consensus 136 ~~-----~~~---------~~~~~~a~~~~~~Gf~~~K----ik~g~~~~~-------~~~~~~d~~~v~~ir~~~---g 187 (357)
T cd03316 136 YD-----DSP---------EELAEEAKRAVAEGFTAVK----LKVGGPDSG-------GEDLREDLARVRAVREAV---G 187 (357)
T ss_pred CC-----CCH---------HHHHHHHHHHHHcCCCEEE----EcCCCCCcc-------hHHHHHHHHHHHHHHHhh---C
Confidence 10 001 1233455555556676665 554421000 000122344555555444 3
Q ss_pred CCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCC
Q 012041 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDI 355 (472)
Q Consensus 276 ~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~ 355 (472)
.++.|++|+ |++|+.+++++++ +.++++++.|||||++++|++++++|++++++
T Consensus 188 --~~~~l~vDa-----------------------N~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~i 241 (357)
T cd03316 188 --PDVDLMVDA-----------------------NGRWDLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARLRQATSV 241 (357)
T ss_pred --CCCEEEEEC-----------------------CCCCCHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHHHHhCCC
Confidence 279999999 3568899999884 56889999999999999999999999999999
Q ss_pred eEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHHhh
Q 012041 356 QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNF--IADLSVGL 430 (472)
Q Consensus 356 pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~--~a~lAva~ 430 (472)
||++||+ +++++++.++++.+++|++|+|++++||++++++++++|+++|+++|++++ .+ .++. .+|++.++
T Consensus 242 pi~~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~-~~-~i~~aa~~hla~a~ 315 (357)
T cd03316 242 PIAAGEN-LYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA-GG-PIGLAASLHLAAAL 315 (357)
T ss_pred CEEeccc-cccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC-CC-HHHHHHHHHHHHhC
Confidence 9999997 678999999999999999999999999999999999999999999876664 44 5554 44554443
No 28
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8e-42 Score=352.84 Aligned_cols=310 Identities=17% Similarity=0.156 Sum_probs=215.2
Q ss_pred eEEEEEEEEEec--------C----CCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHH
Q 012041 45 KVKSVKARQIID--------S----RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (472)
Q Consensus 45 ~I~~V~~~~v~~--------~----~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i 111 (472)
||++|++.++.. + ...+.++|+|+|| |+ +||||+. .+ ..+...+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~----------~G~Ge~~----------~~---~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGN----------TGVGESP----------GG---AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCC----------eeccccC----------CC---HHHHHHH
Confidence 689999877731 1 1246799999999 99 8999862 22 1222334
Q ss_pred HHhhhhcccCCCC-CCHHHHHHHHHHhcCCCCCC---------ccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCC
Q 012041 112 NDILGPKLVGVDI-RDQAEVDAIMLEIDGTPNKS---------KIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (472)
Q Consensus 112 ~~~lap~LiG~d~-~d~e~i~~~l~~~~~~~~~~---------~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~ 181 (472)
..++|.|+|+++ .+.+.+|+.|++.......+ .+..+|++||||||||+.||.+|+|||+||| |..
T Consensus 58 -~~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG---G~~ 133 (395)
T cd03323 58 -LEAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG---GGQ 133 (395)
T ss_pred -HHHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC---CCc
Confidence 357889999988 58888999887532111111 1235799999999999999999999999999 976
Q ss_pred cceeeeeEEEeec--CCccCCCc-ccccc--eeeccCCcccHHHHHHHHH-HHHHHHHHHHHhhcCCCcccCCCCCCCCC
Q 012041 182 ELVMPVPAFNVIN--GGSHAGNN-LAMQE--FMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAP 255 (472)
Q Consensus 182 ~~~vp~~~~~~~~--gg~~~~~~-l~~~e--~~~~p~~~~~~~~a~~~~~-~~~~~lk~~lk~k~G~~~~~~~~~G~~~~ 255 (472)
++++|+ |+++. ++.+.... .+... ..-.+..++..+++.+... +||+++| .|.|. .
T Consensus 134 r~~v~~--ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG~------------~ 195 (395)
T cd03323 134 RDSVPF--LAYLFYKGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGGV------------L 195 (395)
T ss_pred cCeEEE--EEEeeeccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecCC------------C
Confidence 677887 44332 11000000 00000 0000111223344444443 3776665 45441 1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEe
Q 012041 256 NVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335 (472)
Q Consensus 256 ~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iE 335 (472)
+.+.+.+.++++|+++ +++.|++|+ |+.|++++|+++. +.+++ ++.|||
T Consensus 196 ~~~~di~~v~avRea~------~~~~l~vDa-----------------------N~~w~~~~A~~~~-~~l~~-~l~~iE 244 (395)
T cd03323 196 PGEEEIEAVKALAEAF------PGARLRLDP-----------------------NGAWSLETAIRLA-KELEG-VLAYLE 244 (395)
T ss_pred CHHHHHHHHHHHHHhC------CCCcEEEeC-----------------------CCCcCHHHHHHHH-HhcCc-CCCEEE
Confidence 1122344454444443 579999999 3568899999884 55788 999999
Q ss_pred CCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 012041 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRS 415 (472)
Q Consensus 336 dP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~ 415 (472)
||++ |+++|++|++++++||++||+ +++.++++++++.+++|++|+|++++||||+++|++++|+++|+++++ |.+
T Consensus 245 eP~~--d~~~~~~L~~~~~~PIa~dEs-~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~-h~~ 320 (395)
T cd03323 245 DPCG--GREGMAEFRRATGLPLATNMI-VTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGM-HSN 320 (395)
T ss_pred CCCC--CHHHHHHHHHhcCCCEEcCCc-ccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEE-ecC
Confidence 9998 999999999999999999997 678899999999999999999999999999999999999999999854 556
Q ss_pred CCChhhHHHHHHHhhcCCC
Q 012041 416 GETEDNFIADLSVGLASGQ 434 (472)
Q Consensus 416 ~Et~~s~~a~lAva~~~~~ 434 (472)
.|++++.++.++++...+.
T Consensus 321 ~e~~i~~aa~~hlaaa~~~ 339 (395)
T cd03323 321 NHLGISLAMMTHVAAAAPG 339 (395)
T ss_pred cccHHHHHHHHHHHHhCCC
Confidence 7887776554444443333
No 29
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.7e-42 Score=354.06 Aligned_cols=285 Identities=18% Similarity=0.183 Sum_probs=206.2
Q ss_pred ceEEEEEEEEEecC----------CC----CCeEEEEEEEC--CeeeeeccCCCccccceeeeeccCCCCccCcchHHHH
Q 012041 44 AKVKSVKARQIIDS----------RG----NPTVEVDLITD--DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNA 107 (472)
Q Consensus 44 m~I~~V~~~~v~~~----------~~----~~~v~V~I~td--G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a 107 (472)
.||++|+++.+.-. .. ...++|+|+|| |+ +||||+... +.+....
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~----------~G~Ge~~~~---------~~~~~~~ 61 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGL----------KGHGLTFTI---------GRGNEIV 61 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCC----------EEEEEeccC---------CCchHHH
Confidence 48999999888411 00 13689999998 78 899997421 2223333
Q ss_pred HHHHHHhhhhcccCCCCCCHHHHHHHHHH-hcC----CCCC--CccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCC
Q 012041 108 VKNINDILGPKLVGVDIRDQAEVDAIMLE-IDG----TPNK--SKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (472)
Q Consensus 108 ~~~i~~~lap~LiG~d~~d~e~i~~~l~~-~~~----~~~~--~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~ 180 (472)
.. +.+.++|.|+|+||.+++.+++.+.+ +.. .+.+ +++...|++||||||||++||.+|+|||+||| |.
T Consensus 62 ~~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG---g~ 137 (415)
T cd03324 62 CA-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV---DM 137 (415)
T ss_pred HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---CC
Confidence 33 44679999999999998655444433 211 1101 12224699999999999999999999999999 84
Q ss_pred Cc-----------------------------------------ceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 181 KE-----------------------------------------LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 181 ~~-----------------------------------------~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
.+ +++|+ |++ +++... .+ .++..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--y~~-~~~~~~---~~---------~~~~~~ 202 (415)
T cd03324 138 TPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPA--YTT-SAGWLG---YS---------DEKLRR 202 (415)
T ss_pred CHHHhhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCce--eec-CCcccC---CC---------HHHHHH
Confidence 33 23444 432 111100 00 123346
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCccee
Q 012041 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (472)
Q Consensus 220 ~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~ 299 (472)
++.+...+||+++| .|+|. +.+.+.+.++++|+++ | +++.|++|+
T Consensus 203 ~a~~~~~~Gf~~~K----iKvg~-------------~~~~d~~~v~avRe~v---G--~~~~L~vDa------------- 247 (415)
T cd03324 203 LCKEALAQGFTHFK----LKVGA-------------DLEDDIRRCRLAREVI---G--PDNKLMIDA------------- 247 (415)
T ss_pred HHHHHHHcCCCEEE----EeCCC-------------CHHHHHHHHHHHHHhc---C--CCCeEEEEC-------------
Confidence 66666677787665 45431 1122344555555444 3 389999999
Q ss_pred ecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhc---CCeEEeCCccccCHHHHHHHHHc
Q 012041 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV---DIQLVGDDLLVTNPKRIAEAIQK 376 (472)
Q Consensus 300 ~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~---~~pI~~dE~~~~~~~~~~~~i~~ 376 (472)
|+.|+.++|+++ .+.+++|++.|||||++++|+++|++|++++ ++||++||+ +.++++++++++.
T Consensus 248 ----------N~~w~~~~A~~~-~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs-~~~~~~~~~ll~~ 315 (415)
T cd03324 248 ----------NQRWDVPEAIEW-VKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEH-CQNRVVFKQLLQA 315 (415)
T ss_pred ----------CCCCCHHHHHHH-HHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCc-cCCHHHHHHHHHc
Confidence 356889999988 5568999999999999999999999999998 699999997 5678999999999
Q ss_pred CCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC
Q 012041 377 KSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHR 414 (472)
Q Consensus 377 ~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~ 414 (472)
+++|++|+|++++||||++++++++|+++|+++ ++|.
T Consensus 316 ~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~-~pH~ 352 (415)
T cd03324 316 GAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPV-CPHA 352 (415)
T ss_pred CCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE-EEcC
Confidence 999999999999999999999999999999997 5673
No 30
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=6.9e-42 Score=351.33 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=215.7
Q ss_pred eEEEEEEEEEe--------c----CC----CCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHH
Q 012041 45 KVKSVKARQII--------D----SR----GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNA 107 (472)
Q Consensus 45 ~I~~V~~~~v~--------~----~~----~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a 107 (472)
||++|+++.+. + +. ....++|+|+|+ |+ +||||..+ .+ .+
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~----------~G~G~~~~-------~~------~~ 57 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGA----------KGHAFGGR-------PV------TD 57 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCC----------eEEEecCC-------ch------hH
Confidence 57777777663 1 11 135799999999 99 89997421 11 12
Q ss_pred HHHHHHhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeee
Q 012041 108 VKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPV 187 (472)
Q Consensus 108 ~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~ 187 (472)
...+.+.++|.|+|+||.+++++|+.|.+... .....|++||||||||+.||.+|+|||+||| |. ++++|+
T Consensus 58 ~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~~-----~~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g~-~~~v~~ 128 (368)
T cd03329 58 PALVDRFLKKVLIGQDPLDRERLWQDLWRLQR-----GLTDRGLGLVDIALWDLAGKYLGLPVHRLLG---GY-REKIPA 128 (368)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHhhhhcCCcHHHHhh---cc-ccceeE
Confidence 34567789999999999999999999976311 1234689999999999999999999999999 84 467776
Q ss_pred eEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHH
Q 012041 188 PAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLL 267 (472)
Q Consensus 188 ~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v 267 (472)
|.++..+... .... ...+..+++.+...+||+.+| .|.|. ....+.+.+.++.+
T Consensus 129 --y~s~~~~~~~-~~~~--------~~~~~~~~a~~~~~~Gf~~~K----ik~~~-----------~~~~~~di~~i~~v 182 (368)
T cd03329 129 --YASTMVGDDL-EGLE--------SPEAYADFAEECKALGYRAIK----LHPWG-----------PGVVRRDLKACLAV 182 (368)
T ss_pred --EEecCCCccc-ccCC--------CHHHHHHHHHHHHHcCCCEEE----EecCC-----------chhHHHHHHHHHHH
Confidence 4433211000 0000 011234445555555676665 33221 01123345555555
Q ss_pred HHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHH
Q 012041 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347 (472)
Q Consensus 268 ~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~ 347 (472)
|+++ | +++.|++|+ |++||.++|+++ .+.++++++.|||||++++|+++++
T Consensus 183 R~~~---G--~~~~l~vDa-----------------------n~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~ 233 (368)
T cd03329 183 REAV---G--PDMRLMHDG-----------------------AHWYSRADALRL-GRALEELGFFWYEDPLREASISSYR 233 (368)
T ss_pred HHHh---C--CCCeEEEEC-----------------------CCCcCHHHHHHH-HHHhhhcCCCeEeCCCCchhHHHHH
Confidence 5554 3 279999999 356789999988 4568999999999999999999999
Q ss_pred HHHhhcCCeEEeCCccccC-HHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHH
Q 012041 348 SLQSSVDIQLVGDDLLVTN-PKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADL 426 (472)
Q Consensus 348 ~L~~~~~~pI~~dE~~~~~-~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~l 426 (472)
+|++++++||++||+ +.+ +++++++++.+++|++|+|++++||||++++++++|+++|++++ .|.+ .++.+|+
T Consensus 234 ~l~~~~~ipIa~~E~-~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~-~h~~----~~a~~hl 307 (368)
T cd03329 234 WLAEKLDIPILGTEH-SRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVE-LHGN----GAANLHV 307 (368)
T ss_pred HHHhcCCCCEEccCc-ccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEE-EECh----HHHHHHH
Confidence 999999999999997 556 99999999999999999999999999999999999999999986 4532 4556777
Q ss_pred HHhhc
Q 012041 427 SVGLA 431 (472)
Q Consensus 427 Ava~~ 431 (472)
+.++.
T Consensus 308 aaa~~ 312 (368)
T cd03329 308 IAAIR 312 (368)
T ss_pred HhcCC
Confidence 76653
No 31
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=1.3e-40 Score=346.82 Aligned_cols=309 Identities=14% Similarity=0.102 Sum_probs=213.2
Q ss_pred ceEEEEEEEEEe--cC----------CCCCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHH
Q 012041 44 AKVKSVKARQII--DS----------RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (472)
Q Consensus 44 m~I~~V~~~~v~--~~----------~~~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~ 110 (472)
+.||.++..+|. |+ .....++|+|+|| |+ +||||+.. ++++ ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi----------~G~GEa~~----------~~~~---~~~ 60 (441)
T TIGR03247 4 PVVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGN----------TGVGEVPG----------GEKI---RAT 60 (441)
T ss_pred CEEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCC----------eEEEeCCC----------cHHH---HHH
Confidence 457777777762 11 1234689999999 99 89999621 2222 233
Q ss_pred HHHhhhhcccCCCCCCHHHHHHHHHHhcC---CCCCCc------cchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCC-
Q 012041 111 INDILGPKLVGVDIRDQAEVDAIMLEIDG---TPNKSK------IGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT- 180 (472)
Q Consensus 111 i~~~lap~LiG~d~~d~e~i~~~l~~~~~---~~~~~~------~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~- 180 (472)
++ .++|.|+|+||.+++.+|+.|.+... ..+.+. ....|++||||||||++||.+|+|||+||| |.
T Consensus 61 l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLG---gg~ 136 (441)
T TIGR03247 61 LE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLG---EGQ 136 (441)
T ss_pred HH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhC---CCC
Confidence 44 69999999999999999999975210 011111 124699999999999999999999999998 53
Q ss_pred CcceeeeeEEEeecCCc------cCC------CcccccceeeccCCcccHHHHHHHHHH-HHHHHHHHHHhhcCCCcccC
Q 012041 181 KELVMPVPAFNVINGGS------HAG------NNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNV 247 (472)
Q Consensus 181 ~~~~vp~~~~~~~~gg~------~~~------~~l~~~e~~~~p~~~~~~~~a~~~~~~-~~~~lk~~lk~k~G~~~~~~ 247 (472)
.++++|++.++..-|.. +.+ +-....+. .....++..+++.+...+ ||+++| .|+|.
T Consensus 137 ~r~~vp~y~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG~----- 206 (441)
T TIGR03247 137 QRDEVEMLGYLFFIGDRKRTSLPYRSGPQDDDDWFRLRHE-EALTPEAVVRLAEAAYDRYGFRDFK----LKGGV----- 206 (441)
T ss_pred ccceEEEeeeeeeccccccccccccccccccccccccccc-cCCCHHHHHHHHHHHHHhcCCCEEE----EecCC-----
Confidence 46678874332110100 000 00000000 000112334455554443 777665 55542
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHh
Q 012041 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327 (472)
Q Consensus 248 ~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~ 327 (472)
++.+.+.+.++++|+++ +++.|++|+ |++||.++|++++ +.++
T Consensus 207 -------~~~~~Di~~v~avRea~------~d~~L~vDA-----------------------N~~wt~~~Ai~~~-~~Le 249 (441)
T TIGR03247 207 -------LRGEEEIEAVTALAKRF------PQARITLDP-----------------------NGAWSLDEAIALC-KDLK 249 (441)
T ss_pred -------CChHHHHHHHHHHHHhC------CCCeEEEEC-----------------------CCCCCHHHHHHHH-HHhh
Confidence 11122344444444432 489999999 4668899999885 5578
Q ss_pred hCCeeEEeCCCCcCC----HHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHH
Q 012041 328 DFPIVSIEDPFDQDD----WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSK 403 (472)
Q Consensus 328 ~~~l~~iEdP~~~~D----~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~ 403 (472)
+| +.|||||++++| ++++++|++++++||++||+ ++++++++++++.+++|++|+|+. +||||++++++++|+
T Consensus 250 ~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs-~~~~~~~~~li~~~avdi~~~d~~-~gGIt~~~kIa~lA~ 326 (441)
T TIGR03247 250 GV-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMI-ATDWRQMGHALQLQAVDIPLADPH-FWTMQGSVRVAQMCH 326 (441)
T ss_pred hh-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCc-cCCHHHHHHHHHhCCCCEEeccCC-cchHHHHHHHHHHHH
Confidence 89 999999999999 99999999999999999996 678999999999999999999995 678999999999999
Q ss_pred HcCCcEEecCCCCCChhhHH--HHHHHhh
Q 012041 404 SAGWGVMVSHRSGETEDNFI--ADLSVGL 430 (472)
Q Consensus 404 a~g~~~~v~~~~~Et~~s~~--a~lAva~ 430 (472)
++|+.+ .+|...++.++.+ +|++.++
T Consensus 327 a~Gi~v-~~h~~~~~~i~~aa~~hlaaa~ 354 (441)
T TIGR03247 327 DWGLTW-GSHSNNHFDISLAMFTHVAAAA 354 (441)
T ss_pred HcCCEE-EEeCCccCHHHHHHHHHHHHhC
Confidence 999996 5776566666544 4554443
No 32
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.3e-39 Score=327.96 Aligned_cols=278 Identities=21% Similarity=0.244 Sum_probs=209.4
Q ss_pred CCeEEEEEEECCeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcC
Q 012041 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (472)
Q Consensus 60 ~~~v~V~I~tdG~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~ 139 (472)
+..++|+|+|+|+ +||||+.+++ .|.+++...+...+++ ++|.|+|+|+. ++++++.|.....
T Consensus 25 ~~~~~v~v~t~G~----------~G~GE~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~~ 87 (316)
T cd03319 25 AENVIVEIELDGI----------TGYGEAAPTP-----RVTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQELLP 87 (316)
T ss_pred eeEEEEEEEECCE----------EEEEeecCCC-----CCCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHHHhcc
Confidence 3468999999987 8999986542 2345555555555655 59999999999 9999999975321
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 140 ~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
+ ...|++||||||||+.||.+|+|||+||| |..+.++|+ |..+.++ +. ++..+
T Consensus 88 ----~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~~~~~~~--~~~~~~~-------~~---------~~~~~ 140 (316)
T cd03319 88 ----G--NGAARAAVDIALWDLEAKLLGLPLYQLWG---GGAPRPLET--DYTISID-------TP---------EAMAA 140 (316)
T ss_pred ----C--ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCCcee--EEEEeCC-------CH---------HHHHH
Confidence 1 24689999999999999999999999976 666667776 3222211 11 12234
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCccee
Q 012041 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (472)
Q Consensus 220 ~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~ 299 (472)
++.+...+||+.+| .|+|.. + +.+.+.++.+|++ . |++.|++|+
T Consensus 141 ~~~~~~~~Gf~~iK----ik~g~~-----------~--~~d~~~v~~lr~~---~---g~~~l~vD~------------- 184 (316)
T cd03319 141 AAKKAAKRGFPLLK----IKLGGD-----------L--EDDIERIRAIREA---A---PDARLRVDA------------- 184 (316)
T ss_pred HHHHHHHcCCCEEE----EEeCCC-----------h--hhHHHHHHHHHHh---C---CCCeEEEeC-------------
Confidence 44444455676554 554411 1 2233444444443 3 368899999
Q ss_pred ecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCC
Q 012041 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSC 379 (472)
Q Consensus 300 ~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~ 379 (472)
|++|+.++++++ .+.++++++.|||||++++|++++++|++++++||++||+ +.++++++++++.+++
T Consensus 185 ----------n~~~~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~-~~~~~~~~~~~~~~~~ 252 (316)
T cd03319 185 ----------NQGWTPEEAVEL-LRELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADES-CFSAADAARLAGGGAY 252 (316)
T ss_pred ----------CCCcCHHHHHHH-HHHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCC-CCCHHHHHHHHhcCCC
Confidence 355788899988 5668999999999999999999999999999999999996 6789999999999999
Q ss_pred CEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh
Q 012041 380 NGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 380 d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
|++|+|++++||+|++++++++|+++|++++++++ .|++++.++.++++.
T Consensus 253 d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~-~~~~i~~~a~~hl~a 302 (316)
T cd03319 253 DGINIKLMKTGGLTEALRIADLARAAGLKVMVGCM-VESSLSIAAAAHLAA 302 (316)
T ss_pred CEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECc-hhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999876544 488877655444443
No 33
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=3.4e-37 Score=310.73 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=195.6
Q ss_pred CCeEEEEEEECCeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcC
Q 012041 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (472)
Q Consensus 60 ~~~v~V~I~tdG~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~ 139 (472)
+.+++|+|++||. +||||+.+++ .| +++.+++...+. .+.|.|+ . ..+.+.+++.+ +
T Consensus 27 ~~~~lv~l~~~G~----------~G~GE~~p~~-----~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~~~~~~----~ 83 (321)
T PRK15129 27 ARVVVVELEEEGI----------KGTGECTPYP-----RY-GESDASVMAQIM-SVVPQLE-K-GLTREALQKLL----P 83 (321)
T ss_pred eeEEEEEEEeCCe----------EEEEeeCCcC-----CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHHHHhhc----c
Confidence 4568999984488 8999997642 35 467777776664 6889997 2 22333333221 1
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 140 ~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
...|++||||||||+.||..|+|||+||| |..++++|+ +.+++.+ .+.+..+
T Consensus 84 -------~~~a~~aid~AlwDl~gk~~~~pl~~llG---g~~~~~i~~--~~~~~~~----------------~~~~~~~ 135 (321)
T PRK15129 84 -------AGAARNAVDCALWDLAARQQQQSLAQLIG---ITLPETVTT--AQTVVIG----------------TPEQMAN 135 (321)
T ss_pred -------ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeE--EEEecCC----------------CHHHHHH
Confidence 13689999999999999999999999999 976667776 3332111 0112345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCccee
Q 012041 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (472)
Q Consensus 220 ~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~ 299 (472)
++.+...+||+++| .|+| + +.+.+.++++|+++ +++.|++|+
T Consensus 136 ~~~~~~~~G~~~~K----lKv~-------------~--~~d~~~v~avr~~~------~~~~l~vDa------------- 177 (321)
T PRK15129 136 SASALWQAGAKLLK----VKLD-------------N--HLISERMVAIRSAV------PDATLIVDA------------- 177 (321)
T ss_pred HHHHHHHcCCCEEE----EeCC-------------C--chHHHHHHHHHHhC------CCCeEEEEC-------------
Confidence 55555556776665 4432 1 11345565555543 578999999
Q ss_pred ecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCC
Q 012041 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSC 379 (472)
Q Consensus 300 ~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~ 379 (472)
|++||.+++++++ +.++++++.|||||++++|++++++++ +++||++||+ +.+++++.++. +++
T Consensus 178 ----------N~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~l~~~~--~~~pia~dEs-~~~~~d~~~~~--~~~ 241 (321)
T PRK15129 178 ----------NESWRAEGLAARC-QLLADLGVAMLEQPLPAQDDAALENFI--HPLPICADES-CHTRSSLKALK--GRY 241 (321)
T ss_pred ----------CCCCCHHHHHHHH-HHHHhcCceEEECCCCCCcHHHHHHhc--cCCCEecCCC-CCCHHHHHHHH--hhC
Confidence 4678899999874 558999999999999999999998775 5799999997 57899999984 799
Q ss_pred CEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHH
Q 012041 380 NGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSV 428 (472)
Q Consensus 380 d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAv 428 (472)
|++|+|++++|||+++++++++|+++|+++|+|+ +.|+.++.++.+++
T Consensus 242 d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~-~~es~i~~~a~~~l 289 (321)
T PRK15129 242 EMVNIKLDKTGGLTEALALATEARAQGFALMLGC-MLCTSRAISAALPL 289 (321)
T ss_pred CEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEec-chHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888 46887776666655
No 34
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=4.3e-36 Score=295.17 Aligned_cols=213 Identities=19% Similarity=0.246 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHH
Q 012041 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230 (472)
Q Consensus 151 ~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~ 230 (472)
++|||+||||+.||.+|+|||+||| |. ++++|+ |.+++.+ +. ++..+++.+...+||+
T Consensus 45 ~~aid~Al~Dl~gk~~g~pv~~llG---~~-~~~i~~--~~~~~~~-------~~---------~~~~~~~~~~~~~G~~ 102 (265)
T cd03315 45 KAAVDMALWDLWGKRLGVPVYLLLG---GY-RDRVRV--AHMLGLG-------EP---------AEVAEEARRALEAGFR 102 (265)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHcC---CC-CCceEE--EEEecCC-------CH---------HHHHHHHHHHHHCCCC
Confidence 6999999999999999999999999 74 456776 4333211 11 1233455555556676
Q ss_pred HHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCC
Q 012041 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGA 310 (472)
Q Consensus 231 ~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n 310 (472)
.+| .|+|. .+ +.+.+.++.+|+++ | +++.|++|+ |
T Consensus 103 ~~K----iKvg~-----------~~--~~d~~~v~~vr~~~---g--~~~~l~vDa-----------------------n 137 (265)
T cd03315 103 TFK----LKVGR-----------DP--ARDVAVVAALREAV---G--DDAELRVDA-----------------------N 137 (265)
T ss_pred EEE----EecCC-----------CH--HHHHHHHHHHHHhc---C--CCCEEEEeC-----------------------C
Confidence 554 55441 11 22344455554444 2 279999999 3
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
++||.+++++++ +.++++++.|||||++++|++++++|++++++||++||+ +.++++++++++.+++|++++|++++|
T Consensus 138 ~~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~G 215 (265)
T cd03315 138 RGWTPKQAIRAL-RALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADES-AFTPHDAFRELALGAADAVNIKTAKTG 215 (265)
T ss_pred CCcCHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCC-CCCHHHHHHHHHhCCCCEEEEeccccc
Confidence 567889999884 568899999999999999999999999999999999997 678999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCC
Q 012041 391 TVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASG 433 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~ 433 (472)
|||++++++++|+++|+++++++ +.|+.++.++.++++...+
T Consensus 216 Gi~~~~~~~~~A~~~gi~~~~~~-~~~s~i~~~a~~hlaa~~~ 257 (265)
T cd03315 216 GLTKAQRVLAVAEALGLPVMVGS-MIESGLGTLANAHLAAALR 257 (265)
T ss_pred CHHHHHHHHHHHHHcCCcEEecC-ccchHHHHHHHHHHHHhCC
Confidence 99999999999999999987765 4588877666555555444
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=4.2e-34 Score=275.12 Aligned_cols=178 Identities=25% Similarity=0.334 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHH
Q 012041 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230 (472)
Q Consensus 151 ~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~ 230 (472)
++||||||||+.||.+|+|||++|| |..+.++|+ |. +
T Consensus 44 ~~aid~Al~Dl~gk~~~~pl~~llg---g~~~~~v~~--~~-------------------------~------------- 80 (229)
T cd00308 44 ISGIDMALWDLAAKALGVPLAELLG---GGSRDRVPA--YG-------------------------S------------- 80 (229)
T ss_pred HHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceec--cH-------------------------H-------------
Confidence 6999999999999999999999999 976666665 20 0
Q ss_pred HHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCC
Q 012041 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGA 310 (472)
Q Consensus 231 ~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n 310 (472)
.+.++.+|+++ | +++.|++|+ |
T Consensus 81 ------------------------------~~~i~~lr~~~---g--~~~~l~lDa-----------------------N 102 (229)
T cd00308 81 ------------------------------IERVRAVREAF---G--PDARLAVDA-----------------------N 102 (229)
T ss_pred ------------------------------HHHHHHHHHHh---C--CCCeEEEEC-----------------------C
Confidence 01233455555 2 279999999 3
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
+.|+.+++++++ +.++++++.|||||++++|++++++|++++++||++||+ +++++++.++++.+++|++|+|++++|
T Consensus 103 ~~~~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs-~~~~~~~~~~~~~~~~d~~~~k~~~~G 180 (229)
T cd00308 103 GAWTPKEAIRLI-RALEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADES-VTTVDDALEALELGAVDILQIKPTRVG 180 (229)
T ss_pred CCCCHHHHHHHH-HHhhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEecCccccC
Confidence 567889999885 557889999999999999999999999999999999996 678899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcC
Q 012041 391 TVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLAS 432 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~ 432 (472)
|++++++++++|+++|++++++++ .|+.++..+.++++...
T Consensus 181 Gi~~~~~i~~~a~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~ 221 (229)
T cd00308 181 GLTESRRAADLAEAFGIRVMVHGT-LESSIGTAAALHLAAAL 221 (229)
T ss_pred CHHHHHHHHHHHHHcCCEEeecCC-CCCHHHHHHHHHHHHhC
Confidence 999999999999999999977664 57776655544444433
No 36
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6.6e-35 Score=286.38 Aligned_cols=206 Identities=18% Similarity=0.178 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHH
Q 012041 150 AILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVY 229 (472)
Q Consensus 150 A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~ 229 (472)
|++||||||||+.||..| | |..+.++|+ |.+++.+ +. +..+++.+...+||
T Consensus 48 a~aaid~AlwDl~gk~~g-------g---g~~~~~v~~--~~~~~~~-------~~----------~~~~~~~~~~~~Gf 98 (263)
T cd03320 48 LAFGIESALANLEALLVG-------F---TRPRNRIPV--NALLPAG-------DA----------AALGEAKAAYGGGY 98 (263)
T ss_pred HHHHHHHHHhcccccccC-------C---CCCccCcce--eEEecCC-------CH----------HHHHHHHHHHhCCC
Confidence 679999999999999999 7 776666776 5444321 00 12344445555677
Q ss_pred HHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCC
Q 012041 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDG 309 (472)
Q Consensus 230 ~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~ 309 (472)
+.+| .|+|. .+.+.+.+.++.+|+++ | +++.|++|+
T Consensus 99 ~~~K----iKvg~------------~~~~~d~~~v~~vr~~~---g--~~~~l~vDa----------------------- 134 (263)
T cd03320 99 RTVK----LKVGA------------TSFEEDLARLRALREAL---P--ADAKLRLDA----------------------- 134 (263)
T ss_pred CEEE----EEECC------------CChHHHHHHHHHHHHHc---C--CCCeEEEeC-----------------------
Confidence 6665 56542 11122344444444433 2 289999999
Q ss_pred CCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc
Q 012041 310 AHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 310 n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
|+.|+.++++++ .+.++++++.|||||++++|++++++|+ +++||++||+ +.+++++.++++.+++|++|+|++++
T Consensus 135 N~~w~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~~PIa~dEs-~~~~~~~~~~~~~~~~d~v~~k~~~~ 210 (263)
T cd03320 135 NGGWSLEEALAF-LEALAAGRIEYIEQPLPPDDLAELRRLA--AGVPIALDES-LRRLDDPLALAAAGALGALVLKPALL 210 (263)
T ss_pred CCCCCHHHHHHH-HHhhcccCCceEECCCChHHHHHHHHhh--cCCCeeeCCc-cccccCHHHHHhcCCCCEEEECchhc
Confidence 356788999988 4568999999999999999999999999 8899999997 56789999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCC
Q 012041 390 GTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASG 433 (472)
Q Consensus 390 GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~ 433 (472)
||+|++++++++|+++|+++++++ +.|+.++.++.++++...+
T Consensus 211 GGit~~~~i~~~a~~~gi~~~~~~-~~es~ig~aa~~hlaa~~~ 253 (263)
T cd03320 211 GGPRALLELAEEARARGIPAVVSS-ALESSIGLGALAHLAAALP 253 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc-chhhHHHHHHHHHHHHhCC
Confidence 999999999999999999998876 4588776655444444333
No 37
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=1.4e-33 Score=282.50 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=187.3
Q ss_pred CCeEEEEEEECCeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcC
Q 012041 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (472)
Q Consensus 60 ~~~v~V~I~tdG~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~ 139 (472)
+.+++|+|+++|+ +||||+.++ |.|.+++..++...+. .+.|.|+|+++.++. +.
T Consensus 21 ~~~~iv~l~~~G~----------~G~GE~~p~-----~~~~~et~~~~~~~l~-~l~~~l~~~~~~~~~-------~~-- 75 (307)
T TIGR01927 21 REGLIVRLTDEGR----------TGWGEIAPL-----PGFGTETLAEALDFCR-ALIEEITRGDIEAID-------DQ-- 75 (307)
T ss_pred eeEEEEEEEECCc----------EEEEEeecC-----CCCCcccHHHHHHHHH-HHHHHhcccchhhcc-------cc--
Confidence 3569999994488 899999765 2588999998888787 488999998875432 10
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 140 ~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
...+++|||+||||+.||. ++|. ....+. +++ +.+ +. ++..+
T Consensus 76 -------~~~~~~aie~Al~Dl~~k~-~~~~-----------~~~~~~--~~l-~~~-------~~---------~~~~~ 117 (307)
T TIGR01927 76 -------LPSVAFGFESALIELESGD-ELPP-----------ASNYYV--ALL-PAG-------DP---------ALLLL 117 (307)
T ss_pred -------CcHHHHHHHHHHHHHhcCC-CCCc-----------ccccce--eec-cCC-------CH---------HHHHH
Confidence 1257999999999999998 2221 111222 222 111 01 11223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCccee
Q 012041 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (472)
Q Consensus 220 ~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~ 299 (472)
++.+ .+||+.+| .|+|. .+.+.+.+.++.+|+++ | +++.|++|+
T Consensus 118 ~~~~--~~Gf~~~K----iKvG~------------~~~~~d~~~v~~vr~~~---g--~~~~l~vDa------------- 161 (307)
T TIGR01927 118 RSAK--AEGFRTFK----WKVGV------------GELAREGMLVNLLLEAL---P--DKAELRLDA------------- 161 (307)
T ss_pred HHHH--hCCCCEEE----EEeCC------------CChHHHHHHHHHHHHHc---C--CCCeEEEeC-------------
Confidence 3333 45676654 56541 11122344455544443 3 269999999
Q ss_pred ecCCCCCCCCCCccCHHHHHHHHHHHHhh---CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc
Q 012041 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (472)
Q Consensus 300 ~~~~~~~~~~n~~~s~~eai~~~~~~l~~---~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~ 376 (472)
|++||.++|++++ +.+++ +++.|||||++.+ +++++|++++++||++||+ +.++++++++++.
T Consensus 162 ----------N~~w~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs-~~~~~d~~~~~~~ 227 (307)
T TIGR01927 162 ----------NGGLSPDEAQQFL-KALDPNLRGRIAFLEEPLPDA--DEMSAFSEATGTAIALDES-LWELPQLADEYGP 227 (307)
T ss_pred ----------CCCCCHHHHHHHH-HhcccccCCCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCC-cCChHHHHHHHhc
Confidence 4668899999884 55787 8999999999866 9999999999999999997 5678999999999
Q ss_pred CCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH--HHHHHHhhc
Q 012041 377 KSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNF--IADLSVGLA 431 (472)
Q Consensus 377 ~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~--~a~lAva~~ 431 (472)
+++|++|+|++++||++++++++++|+++|+++|++|+ .|++++. ++|++.+++
T Consensus 228 ~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~-~es~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 228 GWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSV-FESSIALGQLARLAAKLS 283 (307)
T ss_pred CCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECc-cchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998874 5887765 455555543
No 38
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=7.6e-32 Score=271.56 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=181.5
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhc
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~ 138 (472)
+.+++|+|+|+ |+ +||||+.++ |.|.+++.+++...++ .+.|.|.+++ +......+
T Consensus 28 ~~~~iV~l~~~~G~----------~G~GE~~p~-----p~~~~et~~~~~~~l~-~l~~~l~~~~------~~~~~~~~- 84 (320)
T PRK02714 28 REGIILRLTDETGK----------IGWGEIAPL-----PWFGSETLEEALAFCQ-QLPGEITPEQ------IFSIPDAL- 84 (320)
T ss_pred eEEEEEEEEeCCCC----------eEEEEecCC-----CCCCcccHHHHHHHHH-hccccCCHHH------HHhhhhcC-
Confidence 46799999999 99 899999764 3588998888876665 4788776532 21111111
Q ss_pred CCCCCCccchhHHHHHHHHHHH-HHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCccc
Q 012041 139 GTPNKSKIGANAILGVSLSVCR-AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATS 217 (472)
Q Consensus 139 ~~~~~~~~g~~A~sAvd~ALwD-~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~ 217 (472)
.++++|+|+| || +.++..+ . ....+|+ +..++ .+.+.
T Consensus 85 ---------~~~~~aie~A-~d~~~~~~~~-----------~-~~~~~~~--~~~i~------------------~~~~~ 122 (320)
T PRK02714 85 ---------PACQFGFESA-LENESGSRSN-----------V-TLNPLSY--SALLP------------------AGEAA 122 (320)
T ss_pred ---------CHHHHHHHHH-HHHHhccccc-----------C-CcCCCce--eeecC------------------CCHHH
Confidence 2579999999 65 4443321 1 1112333 32221 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcc
Q 012041 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (472)
Q Consensus 218 ~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~ 297 (472)
.+++.+...+||+.+| .|+|.. +.+.+.+.++++|++ .| +++.|++|+
T Consensus 123 ~~~a~~~~~~G~~~~K----vKvG~~------------~~~~d~~~v~air~~---~g--~~~~l~vDa----------- 170 (320)
T PRK02714 123 LQQWQTLWQQGYRTFK----WKIGVD------------PLEQELKIFEQLLER---LP--AGAKLRLDA----------- 170 (320)
T ss_pred HHHHHHHHHcCCCEEE----EEECCC------------ChHHHHHHHHHHHHh---cC--CCCEEEEEC-----------
Confidence 4556566666786665 565521 112223444444443 33 289999999
Q ss_pred eeecCCCCCCCCCCccCHHHHHHHHHHHHhh---CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHH
Q 012041 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI 374 (472)
Q Consensus 298 y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~---~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i 374 (472)
|++||.++|++++ +.+++ +++.|||||++++|++++++|++++++||++||+ +.+++++++++
T Consensus 171 ------------N~~w~~~~A~~~~-~~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~~Pia~DEs-~~~~~d~~~~~ 236 (320)
T PRK02714 171 ------------NGGLSLEEAKRWL-QLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIALDES-VANLAQLQQCY 236 (320)
T ss_pred ------------CCCCCHHHHHHHH-HHHhhccCCCccEEECCCCcccHHHHHHHHHhCCCCEEECCc-cCCHHHHHHHH
Confidence 4668899999874 45676 7999999999999999999999999999999997 67899999999
Q ss_pred HcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHH--HHHHhhc
Q 012041 375 QKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIA--DLSVGLA 431 (472)
Q Consensus 375 ~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a--~lAva~~ 431 (472)
+.+++|++|+|++++||+++++ ++|+++|+++|++++ .|++++.++ |++.++.
T Consensus 237 ~~~a~d~v~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~-~es~ig~aa~~hlaa~~~ 291 (320)
T PRK02714 237 QQGWRGIFVIKPAIAGSPSRLR---QFCQQHPLDAVFSSV-FETAIGRKAALALAAELS 291 (320)
T ss_pred HcCCCCEEEEcchhcCCHHHHH---HHHHHhCCCEEEEec-hhhHHHHHHHHHHHHhCC
Confidence 9999999999999999999654 679999999998875 588876544 5555544
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.98 E-value=2e-31 Score=315.96 Aligned_cols=295 Identities=14% Similarity=0.108 Sum_probs=201.4
Q ss_pred ceEEEEEEEEEe--------cCCC------CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHH--
Q 012041 44 AKVKSVKARQII--------DSRG------NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN-- 106 (472)
Q Consensus 44 m~I~~V~~~~v~--------~~~~------~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~-- 106 (472)
|||++|+.+.+- .+.+ +..++|+|++| |. +||||+.++. +.+++...
T Consensus 931 ~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~----------~G~GEa~pl~------~~~et~~~~~ 994 (1655)
T PLN02980 931 CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGS----------VGFGEVAPLE------IHEEDLLDVE 994 (1655)
T ss_pred ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCC----------EEEEecCCCC------CCccccccHH
Confidence 999999998883 1221 45699999999 98 7999987642 22333222
Q ss_pred -HH----HHH----HHhhhhcccCCCCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhh
Q 012041 107 -AV----KNI----NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQEL 177 (472)
Q Consensus 107 -a~----~~i----~~~lap~LiG~d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~ 177 (472)
.+ ..+ .+.++|.|+|+++ +.+|+.+.... +.....|++||||||||+.||..|+|||+|||
T Consensus 995 ~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~~~-----~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLG-- 1064 (1655)
T PLN02980 995 EQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGIPP-----SSIFPSVRCGLEMAILNAIAVRHGSSLLNILD-- 1064 (1655)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 11 112 1356899999954 33455553211 11235799999999999999999999999999
Q ss_pred cCCCcceee-------eeEEEeecCCccCCCcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCC
Q 012041 178 SGTKELVMP-------VPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDE 250 (472)
Q Consensus 178 ~G~~~~~vp-------~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~ 250 (472)
|.. .+.+ +|++..+. +. ....+..+++.+...+||+.+| .|+|..
T Consensus 1065 -g~~-~~~~~~~~~~~v~v~~~~~-~~--------------~~~~~~~~~a~~~~~~Gf~~~K----lKvG~~------- 1116 (1655)
T PLN02980 1065 -PYQ-KDENGSEQSHSVQICALLD-SN--------------GSPLEVAYVARKLVEEGFSAIK----LKVGRR------- 1116 (1655)
T ss_pred -CCC-CCcceeccccceeeeeccC-CC--------------CCHHHHHHHHHHHHHcCCCEEE----EecCCC-------
Confidence 732 1121 22222211 00 0112234555555566776665 555410
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCC
Q 012041 251 GGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP 330 (472)
Q Consensus 251 G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~ 330 (472)
.+.+.+.+.++++|++ .| +++.|++|+ |++||.++|++++ +.+++++
T Consensus 1117 ----~~~~~D~~~i~alRe~---~G--~~~~LrlDA-----------------------N~~ws~~~A~~~~-~~L~~~~ 1163 (1655)
T PLN02980 1117 ----VSPIQDAAVIQEVRKA---VG--YQIELRADA-----------------------NRNWTYEEAIEFG-SLVKSCN 1163 (1655)
T ss_pred ----CCHHHHHHHHHHHHHH---cC--CCCeEEEEC-----------------------CCCCCHHHHHHHH-HHHhhcC
Confidence 0112233444444443 33 289999999 4668899999885 5588999
Q ss_pred eeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHH-----HHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 012041 331 IVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPK-----RIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSA 405 (472)
Q Consensus 331 l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~-----~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~ 405 (472)
+.|||||++ +.+++++|++++++||++||+. .+++ .++.+++.+++ ++++|++++|||+++++++++|+++
T Consensus 1164 i~~iEqPl~--~~~~l~~l~~~~~iPIA~DEs~-~~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~~~~ia~~A~~~ 1239 (1655)
T PLN02980 1164 LKYIEEPVQ--DEDDLIKFCEETGLPVALDETI-DKFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFENAALIARWAQQH 1239 (1655)
T ss_pred CCEEECCCC--CHHHHHHHHHhCCCCEEeCCCc-CCcccchHHHHHHHHHCCCe-EEEeChhhhCCHHHHHHHHHHHHHc
Confidence 999999997 5799999999999999999974 4443 46777777655 7899999999999999999999999
Q ss_pred CCcEEecCCCCCChhhHHHHHHHhh
Q 012041 406 GWGVMVSHRSGETEDNFIADLSVGL 430 (472)
Q Consensus 406 g~~~~v~~~~~Et~~s~~a~lAva~ 430 (472)
|+.+|+++ +.|+.++.++.++++.
T Consensus 1240 gi~~~~~s-~~es~Ig~aA~~hlaa 1263 (1655)
T PLN02980 1240 GKMAVISA-AYESGLGLSAYIQFAS 1263 (1655)
T ss_pred CCeEEecC-cccCHHHHHHHHHHHH
Confidence 99998876 5699877655444433
No 40
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=99.97 E-value=2.8e-30 Score=260.32 Aligned_cols=259 Identities=15% Similarity=0.167 Sum_probs=183.2
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhc
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~ 138 (472)
+.+|+|+|+ | |+ +||||+.+++ .|.+++..++...+.+.+.|.+. .++.+. ..
T Consensus 27 ~~~viV~l~-d~G~----------~G~GE~~p~~-----~~~~et~~~~~~~l~~~~~~~~~-~~~~~~-------~~-- 80 (322)
T PRK05105 27 RDGLVVQLR-EGER----------EGWGEIAPLP-----GFSQETLEEAQEALLAWLNNWLA-GDCDDE-------LS-- 80 (322)
T ss_pred eeeEEEEEE-ECCc----------EEEEEeCCCC-----CCCccCHHHHHHHHHHHHHHhhc-Cccccc-------cc--
Confidence 467999997 6 98 8999997652 58899999998888887887654 443331 00
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccH
Q 012041 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (472)
Q Consensus 139 ~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~ 218 (472)
....++.++++|+||+.||..+.|++. ..++ +.+ +. ++..
T Consensus 81 -------~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------~~~l------~~~-------~~---------~~~~ 120 (322)
T PRK05105 81 -------QYPSVAFGLSCALAELAGTLPQAANYR-----------TAPL------CYG-------DP---------DELI 120 (322)
T ss_pred -------cCcHHHHHHHHHHHHhcCCCCCCCCcc-----------eeee------ecC-------CH---------HHHH
Confidence 113688999999999999998888751 1221 101 01 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcce
Q 012041 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (472)
Q Consensus 219 ~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y 298 (472)
+++.+. +||+.+| .|+|. .+.+.+.+.++.+|+++ +++.|++|+
T Consensus 121 ~~a~~~--~Gf~~~K----vKvG~------------~~~~~d~~~i~~vr~~~------~~~~l~vDa------------ 164 (322)
T PRK05105 121 LKLADM--PGEKVAK----VKVGL------------YEAVRDGMLVNLLLEAI------PDLKLRLDA------------ 164 (322)
T ss_pred HHHHHc--CCCCEEE----EEECC------------CCHHHHHHHHHHHHHhC------CCCeEEEEC------------
Confidence 444443 5776665 56551 11122234444444332 478999999
Q ss_pred eecCCCCCCCCCCccCHHHHHHHHHHHHhh---CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHH
Q 012041 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (472)
Q Consensus 299 ~~~~~~~~~~~n~~~s~~eai~~~~~~l~~---~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~ 375 (472)
|+.||.++|++++ +.+++ +++.|||||++. .+.+++|++++++||++||+. .++. +...+
T Consensus 165 -----------N~~w~~~~A~~~~-~~l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~~PIa~DEs~-~~~~-~~~~~- 227 (322)
T PRK05105 165 -----------NRGWTLEKAQQFA-KYVPPDYRHRIAFLEEPCKT--PDDSRAFARATGIAIAWDESL-REPD-FQFEA- 227 (322)
T ss_pred -----------CCCCCHHHHHHHH-HHhhhhcCCCccEEECCCCC--HHHHHHHHHhCCCCEEECCCC-Cchh-hhhhh-
Confidence 4668899999885 45788 999999999963 678999999999999999974 5554 44444
Q ss_pred cCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcC-CCcccC
Q 012041 376 KKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLAS-GQIKTG 438 (472)
Q Consensus 376 ~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~-~~i~~g 438 (472)
.+++|++|||++++|||+++++++++|+++|+++|+++ +.|+.++.++.++++... +...+|
T Consensus 228 ~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~-~~es~i~~aa~~hla~~~~~~~~~~ 290 (322)
T PRK05105 228 EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISS-SIESSLGLTQLARLAAWLTPDTIPG 290 (322)
T ss_pred cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEEC-chhHHHHHHHHHHHHHhcCCCCCCC
Confidence 77899999999999999999999999999999998886 469987765544444333 333344
No 41
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=99.96 E-value=5.9e-29 Score=216.64 Aligned_cols=130 Identities=61% Similarity=0.985 Sum_probs=114.0
Q ss_pred eEEEEEEEEEecCCCCCeEEEEEEEC-Cee-eeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCC
Q 012041 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (472)
Q Consensus 45 ~I~~V~~~~v~~~~~~~~v~V~I~td-G~~-~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~ 122 (472)
||++|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++..|+|+++..+++.|++.|+|.|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 79999999999999999999999999 865 9999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHh
Q 012041 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHI 174 (472)
Q Consensus 123 d~~d~e~i~~~l~~~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lL 174 (472)
++.||++||+.|.++|++.+++++|.|++.|+|+|++.+.|+.+++|||+||
T Consensus 81 ~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999999999999999999999999999999999999999997
No 42
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=99.88 E-value=1.1e-21 Score=197.46 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHH-hhCCeeEEeCCC
Q 012041 260 NREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV-RDFPIVSIEDPF 338 (472)
Q Consensus 260 ~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l-~~~~l~~iEdP~ 338 (472)
+.+.++++|+++ | +++.|++|+ |++||.++|++++ +.+ +++++.|||||+
T Consensus 120 Di~rv~avRe~l---G--pd~~LrvDA-----------------------N~~ws~~~Ai~~~-~~L~e~~~l~~iEqP~ 170 (327)
T PRK02901 120 DVARVNAVRDAL---G--PDGRVRVDA-----------------------NGGWSVDEAVAAA-RALDADGPLEYVEQPC 170 (327)
T ss_pred HHHHHHHHHHhc---C--CCCEEEEEC-----------------------CCCCCHHHHHHHH-HHhhhccCceEEecCC
Confidence 344454444444 3 289999999 3568899999885 457 679999999999
Q ss_pred CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCC
Q 012041 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGET 418 (472)
Q Consensus 339 ~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et 418 (472)
+ +++++++|++++++||++||+ +++.+++.++++.+++|++++|++++|||+++++ +|+++|+++++++ +.||
T Consensus 171 ~--~~~~la~Lr~~~~vPIA~DEs-~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s-~~es 243 (327)
T PRK02901 171 A--TVEELAELRRRVGVPIAADES-IRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSS-ALDT 243 (327)
T ss_pred C--CHHHHHHHHHhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeC-Cccc
Confidence 7 499999999999999999997 6778999999999999999999999999999988 5789999998775 5688
Q ss_pred hhhHHHHHHHhhcCC
Q 012041 419 EDNFIADLSVGLASG 433 (472)
Q Consensus 419 ~~s~~a~lAva~~~~ 433 (472)
+++.++.++++...+
T Consensus 244 ~ig~aA~lhlaaalp 258 (327)
T PRK02901 244 SVGIAAGLALAAALP 258 (327)
T ss_pred HHHHHHHHHHHHhCC
Confidence 877656555544333
No 43
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.6e-18 Score=164.51 Aligned_cols=303 Identities=19% Similarity=0.279 Sum_probs=212.5
Q ss_pred HHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHh-cCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcc
Q 012041 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLEI-DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKEL 183 (472)
Q Consensus 105 ~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~-~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~ 183 (472)
+..+..++.+++|.|+|+|..-.-.-.+.+..+ ++ ..+..+..+++|.||.|+.+.+.+..-.+.+.+.++.++.
T Consensus 87 ~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~----~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~ 162 (410)
T COG3799 87 EHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDG----NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRV 162 (410)
T ss_pred hhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccC----CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCCc
Confidence 455677899999999999865432221222222 22 2355678999999999999999999999999988887766
Q ss_pred eeeeeEEEeecCCccCC-CcccccceeeccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHH
Q 012041 184 VMPVPAFNVINGGSHAG-NNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (472)
Q Consensus 184 ~vp~~~~~~~~gg~~~~-~~l~~~e~~~~p~~~~~~~~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~ 262 (472)
.-|+|+|...+...+.. .+|-.+.+-++|.+ +-+.. .++| ++-.+..|
T Consensus 163 te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHg-----------------LiNsv-e~~G-------------~dG~~l~E 211 (410)
T COG3799 163 TESVPLFGQSGDDRYIAVDKMILKGVDVLPHG-----------------LINSV-EELG-------------FDGEKLRE 211 (410)
T ss_pred cccccccccCcchhhhhHHHHHHhhcCccchh-----------------hhhhH-HHhC-------------CchHHHHH
Confidence 66677774321110000 00001111111110 00000 1222 11133467
Q ss_pred HHHHHHHHHHHhCCCC-CcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCC--eeEEeCCCC
Q 012041 263 GLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDPFD 339 (472)
Q Consensus 263 ~l~~v~~av~~~g~~g-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~--l~~iEdP~~ 339 (472)
.++++.+.+...|-.| .-.|.+|+ | |+....| ++++....+|++++-++.+ ..+||-|++
T Consensus 212 yv~Wls~R~~~~g~~gYhP~lH~DV-----Y---G~iGe~f---------g~dp~r~a~yi~~l~~~a~~~pL~IEgP~D 274 (410)
T COG3799 212 YVRWLSDRILSKGTSGYHPTLHIDV-----Y---GTIGEIF---------GMDPLRCAQYIASLEKEAQGLPLYIEGPVD 274 (410)
T ss_pred HHHHHHHHHHhcCCCCCCccEEEee-----h---hhhHHHh---------CCCHHHHHHHHHHHHhhCCCCceeeecccc
Confidence 7888888777776445 57788999 3 4432221 3577788888777544433 568999998
Q ss_pred c----CCHHHHHHHHhhc-----CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE
Q 012041 340 Q----DDWSSWASLQSSV-----DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVM 410 (472)
Q Consensus 340 ~----~D~~~~~~L~~~~-----~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~ 410 (472)
. ..++.|+++++.+ ++.|++|| +|++.+|+..+.+.++++++|||...+|+|-+..+.+.+|..+.+..+
T Consensus 275 aGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDE-wCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AY 353 (410)
T COG3799 275 AGSKPAQIRLLAAITKELTRLGSGVKIVADE-WCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAY 353 (410)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCcceEeehh-hcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCcccee
Confidence 5 4678888888754 38999999 589999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCChhh--HHHHHHHhhcCCCc--ccCCCCCchhHHHhhHHHHHHHHhC
Q 012041 411 VSHRSGETEDN--FIADLSVGLASGQI--KTGAPCRSERLAKYNQLLRIEEELG 460 (472)
Q Consensus 411 v~~~~~Et~~s--~~a~lAva~~~~~i--~~g~~~~~e~~~k~n~ll~i~~~l~ 460 (472)
+|..|.||..| .++|+|+|..+-.+ |||.-....--++.||+.|.-.-|.
T Consensus 354 vGGtCnETdvSAr~cvHValAt~a~~mLaKPGMGfDeg~~iV~NEmnRtlA~l~ 407 (410)
T COG3799 354 VGGTCNETDVSARTCVHVALATRAMRMLAKPGMGFDEGLDIVFNEMNRTLALLQ 407 (410)
T ss_pred ecccccccchhhhhhhhhhhhhcHHHHhcCCCCCchhHHHHHHHHHHHHHHHHh
Confidence 99999999877 47888888877665 7888877777788999888765443
No 44
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.80 E-value=1.6e-18 Score=159.29 Aligned_cols=183 Identities=22% Similarity=0.342 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHHHHHhCCCC-CcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhh-CC-eeEEe
Q 012041 259 DNREGLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD-FP-IVSIE 335 (472)
Q Consensus 259 ~~~~~l~~v~~av~~~g~~g-~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~-~~-l~~iE 335 (472)
...+.+++|++.+.+.|..+ .-.|.+|+. |....-|++ +.+.+.+|+.++.+. .| -..||
T Consensus 48 ~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVY--------GtiG~~f~~---------d~~~~adYl~~l~~aA~P~~L~iE 110 (248)
T PF07476_consen 48 KLLEYVKWLKDRIRELGDEDYRPVLHIDVY--------GTIGLAFDN---------DPDRMADYLAELEEAAAPFKLRIE 110 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSTT---EEEEE-T--------THHHHHTTT----------HHHHHHHHHHHHHHHTTS-EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccEEEEcc--------chHHHHhCC---------CHHHHHHHHHHHHHhcCCCeeeee
Confidence 45678899999999987655 577899994 544433431 678888898876554 44 44899
Q ss_pred CCCCcCC----HHHHHHHHhhc-----CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcC
Q 012041 336 DPFDQDD----WSSWASLQSSV-----DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAG 406 (472)
Q Consensus 336 dP~~~~D----~~~~~~L~~~~-----~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g 406 (472)
.|++..+ ++.+++||+.+ ++.|++|| ++++++|++.+.+.+|+|++|||....|||.++.+.+-+|+++|
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADE-WCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~g 189 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADE-WCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHG 189 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-T-T--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeeh-hcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcC
Confidence 9998754 57888888776 38999999 78999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCCChhh--HHHHHHHhhcCCCc--ccCCCCCchhHHHhhHHHHHHHHh
Q 012041 407 WGVMVSHRSGETEDN--FIADLSVGLASGQI--KTGAPCRSERLAKYNQLLRIEEEL 459 (472)
Q Consensus 407 ~~~~v~~~~~Et~~s--~~a~lAva~~~~~i--~~g~~~~~e~~~k~n~ll~i~~~l 459 (472)
+..++|.+|.||..| .++|+|+|.++.++ |||.-...--+.++||+.|+...+
T Consensus 190 vgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal~ 246 (248)
T PF07476_consen 190 VGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLALL 246 (248)
T ss_dssp -EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHHh
Confidence 999999999999887 48999999999888 799988888899999999987643
No 45
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.65 E-value=1.1e-15 Score=131.56 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=75.9
Q ss_pred CCeEEEEEEEC-CeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhc
Q 012041 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (472)
Q Consensus 60 ~~~v~V~I~td-G~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~ 138 (472)
++.+.|+|+|+ |+ +||||+.+.. + +.......+.+.+.|.|+|+++.+++.+++.+.+..
T Consensus 26 ~~~v~V~l~t~~G~----------~G~Ge~~~~~------~---~~~~~~~~~~~~l~~~l~g~~~~~~~~~~~~~~~~~ 86 (117)
T PF02746_consen 26 REFVLVRLETDDGV----------VGWGEAFPSP------G---TAETVASALEDYLAPLLIGQDPDDIEDIWQELYRLI 86 (117)
T ss_dssp EEEEEEEEEETTSE----------EEEEEEESSS------S---SHHHHHHHHHHTHHHHHTTSBTTGHHHHHHHHHHHT
T ss_pred eEEEEEEEEECCCC----------EEEEEeeCCc------c---hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 45799999999 99 8999986522 1 344566678888999999999999999999887632
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhh
Q 012041 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (472)
Q Consensus 139 ~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG 175 (472)
. ....|++|||+||||+.||.+|+|||+|||
T Consensus 87 ~------~~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 87 K------GNPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp S------SHHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred c------chHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 1 135799999999999999999999999998
No 46
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.35 E-value=5.4e-12 Score=97.60 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCH
Q 012041 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343 (472)
Q Consensus 264 l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~ 343 (472)
++.+|+++ | +++.|++|+ |+.||.+++++++ +.++++ .|||||++++|+
T Consensus 2 i~avr~~~---g--~~~~l~vDa-----------------------n~~~~~~~a~~~~-~~l~~~--~~iEeP~~~~d~ 50 (67)
T PF01188_consen 2 IRAVREAV---G--PDIDLMVDA-----------------------NQAWTLEEAIRLA-RALEDY--EWIEEPLPPDDL 50 (67)
T ss_dssp HHHHHHHH---S--TTSEEEEE------------------------TTBBSHHHHHHHH-HHHGGG--SEEESSSSTTSH
T ss_pred HHHHHHhh---C--CCCeEEEEC-----------------------CCCCCHHHHHHHH-HHcChh--heeecCCCCCCH
Confidence 45556655 3 389999999 3567899999885 557875 999999999999
Q ss_pred HHHHHHHhhcCCeEEeC
Q 012041 344 SSWASLQSSVDIQLVGD 360 (472)
Q Consensus 344 ~~~~~L~~~~~~pI~~d 360 (472)
+++++|++++++||++|
T Consensus 51 ~~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 51 DGLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHhCCCCEEeC
Confidence 99999999999999987
No 47
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.20 E-value=5.1e-11 Score=101.48 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCC
Q 012041 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQ 434 (472)
Q Consensus 360 dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~ 434 (472)
||+ +.++++++++++.+++|++|+|++++||||++++++++|+++|+++++++ + ++.++.+++++++...+.
T Consensus 1 gE~-~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~-~-~~~i~~aa~~hlaaa~~~ 72 (111)
T PF13378_consen 1 GES-LFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS-M-ESGIGLAASLHLAAALPN 72 (111)
T ss_dssp STT-SSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS-S-SSHHHHHHHHHHHHTSTT
T ss_pred CCC-CCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC-C-CCcHHHHHHHHHHHhcCC
Confidence 675 67899999999999999999999999999999999999999999986554 5 888887777777766654
No 48
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.18 E-value=1.1e-09 Score=101.49 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=165.9
Q ss_pred CCeEEEEEEECCeeeeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHhcC
Q 012041 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (472)
Q Consensus 60 ~~~v~V~I~tdG~~~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~~~~ 139 (472)
+..+.|++..++. +||||..+++ .|..++.+.+-......+...+.|.++.+..
T Consensus 27 RdGl~V~l~~~~r----------~gwGEIaPLP-----gFSqETleqAq~~a~~wl~~W~~g~~~~d~~----------- 80 (321)
T COG1441 27 RDGLYVCLREGER----------EGWGEIAPLP-----GFSQETLEQAQEQALAWLNNWLAGHDPLDPQ----------- 80 (321)
T ss_pred cccEEEEEeeCCc----------ccccccCCCC-----CcCHHHHHHHHHHHHHHHHHHHccCCccccc-----------
Confidence 4458888887656 8999998775 4888888877766666677777776543311
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcCCCcceeeeeEEEeecCCccCCCcccccceeeccCCcccHH
Q 012041 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (472)
Q Consensus 140 ~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G~~~~~vp~~~~~~~~gg~~~~~~l~~~e~~~~p~~~~~~~ 219 (472)
-.+...++|+|+..+.+-. |. . |..+ .-|. + .|. ..|.+ .
T Consensus 81 -------~PSVAFGlScA~aEl~~~L---p~----~---~nY~-~APL--C---~GD--------PDeL~---------~ 120 (321)
T COG1441 81 -------MPSVAFGLSCALAELKGTL---PE----A---ANYR-VAPL--C---TGD--------PDELY---------L 120 (321)
T ss_pred -------CchhHHHHHHHHHHHhhhc---hh----h---cCcc-cccC--c---CCC--------HHHHH---------H
Confidence 1246689999998887743 11 1 3333 2332 2 222 11211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCccee
Q 012041 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (472)
Q Consensus 220 ~a~~~~~~~~~~lk~~lk~k~G~~~~~~~~~G~~~~~~~~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~ 299 (472)
....+ .|- +.-|+|+|- |.+.- |--.+..+.+++ +|.+|++|+
T Consensus 121 ~L~~m--pGe----KvAKvKVGl----------YEa~R--DGmivnllLEai------PDL~LRLDA------------- 163 (321)
T COG1441 121 KLADM--PGE----KVAKVKVGL----------YEAVR--DGMIVNLLLEAI------PDLHLRLDA------------- 163 (321)
T ss_pred HHhcC--Ccc----eeeeeeeee----------eeccc--cchHHHHHHHhC------ccceeeecc-------------
Confidence 00000 011 122355542 22211 233455556666 689999999
Q ss_pred ecCCCCCCCCCCccCHHHHHHHHHHHHhh-C--CeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc
Q 012041 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRD-F--PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (472)
Q Consensus 300 ~~~~~~~~~~n~~~s~~eai~~~~~~l~~-~--~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~ 376 (472)
|..||+..+..| ++.+.. | .|.|+|||+.- ...-+++...+++-|+-||+. .. .||..-. .
T Consensus 164 ----------NRaWtp~Ka~~F-AkyV~p~~R~RIaFLEEPCkt--~aeSr~Fa~eTgIAIAWDEs~-re-adF~~e~-e 227 (321)
T COG1441 164 ----------NRAWTPLKAQQF-AKYVNPDYRSRIAFLEEPCKT--RAESRAFARETGIAIAWDESL-RE-ADFAFEA-E 227 (321)
T ss_pred ----------cccCChHHHHHH-HHhcCHHHHHHHHHHhcccCC--hHHHHHHHHhcCeeEeecchh-cc-ccccccc-C
Confidence 356888888766 555543 4 49999999973 456677888999999999974 33 4444322 4
Q ss_pred CCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh--hhHHHHHHHhhcCCCcccC
Q 012041 377 KSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETE--DNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 377 ~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~--~s~~a~lAva~~~~~i~~g 438 (472)
..+..|.||++-+|.+....+.++-|++.|+..++++ +.|+. .+..+.+|.-+ .+...+|
T Consensus 228 ~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISS-SiESSLGLtQLARiA~~l-tP~tvPG 289 (321)
T COG1441 228 PGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISS-SIESSLGLTQLARIAAWL-TPNTVPG 289 (321)
T ss_pred CCceEEEecccchhhHHHHHHHHHHHHhcCceeEeec-hhhhhcCHHHHHHHHHHh-CCCCCCC
Confidence 4688999999999999999999999999999998877 57774 45677776643 3443443
No 49
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=98.34 E-value=5.6e-06 Score=72.76 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=68.6
Q ss_pred eEEEEEEEC-Cee----eeeccCCCccccceeeeeccCCCCccCcchHHHHHHHHHHhhhhcccCCCCCCHHHHHHHHHH
Q 012041 62 TVEVDLITD-DLF----RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLE 136 (472)
Q Consensus 62 ~v~V~I~td-G~~----~~~~p~~~~~G~gEa~~~~d~~~~~~~g~~~~~a~~~i~~~lap~LiG~d~~d~e~i~~~l~~ 136 (472)
+|.|.+.++ |.+ |+++.= +|-|-.-+ -|. .+..+..|++.++|.|+|+|..+..+.-+.+..
T Consensus 52 sisV~l~L~dG~va~GDCaaVQY---SGagGRDP-------LF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~ 118 (159)
T PF05034_consen 52 SISVMLVLEDGQVAYGDCAAVQY---SGAGGRDP-------LFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDE 118 (159)
T ss_dssp EEEEEEEETTS-EEEEEE---TT---TTSTTS-S-------------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH
T ss_pred EEEEEEEeCCCCEEEeeehheee---cccCCCCC-------ccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHh
Confidence 589999999 875 555551 33332222 233 356677889999999999999999998888877
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHhhcCCchHHHhhhhcC
Q 012041 137 IDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (472)
Q Consensus 137 ~~~~~~~~~~g~~A~sAvd~ALwD~~ak~~g~Pl~~lLG~~~G 179 (472)
+ ..+.++..+..++|++||.|+.|++.+.-..+.+.+++|
T Consensus 119 ~---~~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~Ey~ 158 (159)
T PF05034_consen 119 L---VDGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAEEYG 158 (159)
T ss_dssp ----ETTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHCT
T ss_pred c---ccCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 5 233467778899999999999999999999999886654
No 50
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.19 E-value=4.1e-05 Score=78.04 Aligned_cols=87 Identities=10% Similarity=0.176 Sum_probs=71.0
Q ss_pred CcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEe-----------CCC-CcCCHHHH
Q 012041 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-----------DPF-DQDDWSSW 346 (472)
Q Consensus 279 ~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iE-----------dP~-~~~D~~~~ 346 (472)
++.|+++.+..++ .+.+++.++++++ .+.++++++.||| .|+ +..+++..
T Consensus 221 d~~v~vri~~~~~-----------------~~~g~~~~e~~~i-a~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 221 DKPLFVRISATDW-----------------VEGGWDLEDSVEL-AKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred CceEEEEEccccc-----------------CCCCCCHHHHHHH-HHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 7889999854321 1356788999877 5668889999999 477 45677888
Q ss_pred HHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 347 ~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
++|++.+++||++.+. +++++++.++++.+.+|+|.+
T Consensus 283 ~~ir~~~~iPVi~~G~-i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 283 ERIRQEAGIPVIAVGL-ITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHhhCCCCEEEeCC-CCCHHHHHHHHHcCCCCeehh
Confidence 9999999999999996 678999999999999999875
No 51
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.88 E-value=9.9e-05 Score=75.31 Aligned_cols=87 Identities=10% Similarity=0.152 Sum_probs=68.2
Q ss_pred CcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEe-------CCCCc---C-------
Q 012041 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DPFDQ---D------- 341 (472)
Q Consensus 279 ~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iE-------dP~~~---~------- 341 (472)
++.|++++++.++. ..+|+.++++++ .+.++++++.||| +|... .
T Consensus 216 d~~v~vris~~~~~-----------------~~g~~~eea~~i-a~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 216 GFPVGIKLNSADFQ-----------------RGGFTEEDALEV-VEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred CCeEEEEEcHHHcC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 78999999643221 135788999877 5668999999999 55532 1
Q ss_pred --CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 342 --DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 342 --D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.++..++|++.+++||++++. +++++++.++++.+.+|+|.+
T Consensus 278 ~~~~~~~~~ik~~v~iPVi~~G~-i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 278 AYFLEFAEKIRKVTKTPLMVTGG-FRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hhhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 146667899999999999996 678999999999999999875
No 52
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.51 E-value=0.0029 Score=64.11 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=67.9
Q ss_pred CcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEe-------CCCC---------cCC
Q 012041 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DPFD---------QDD 342 (472)
Q Consensus 279 ~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iE-------dP~~---------~~D 342 (472)
++.|+++.+..... +.+++.++++++ .+.++++++.||+ +|.. ..+
T Consensus 208 d~~i~vris~~~~~-----------------~~g~~~~e~~~l-a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 208 DFPVGVRLSADDFV-----------------PGGLTLEEAIEI-AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred CceEEEEechhccC-----------------CCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchh
Confidence 78888888532211 234678888877 5668899999994 6543 456
Q ss_pred HHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 343 ~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
++..+++++.+++||++.+. +++++++.++++.+.+|+|.+
T Consensus 270 ~~~~~~ir~~~~iPVi~~Gg-i~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGG-IRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCC-CCCHHHHHHHHHCCCCCeeee
Confidence 78889999999999999986 678999999999999999876
No 53
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.38 E-value=0.00052 Score=70.46 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=57.1
Q ss_pred CccCHHHHHHHHHHHHhhCCe-------eEEeCCCCcC--------CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHH
Q 012041 311 HVLSAQSLGDLYKEFVRDFPI-------VSIEDPFDQD--------DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l-------~~iEdP~~~~--------D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~ 375 (472)
.+++.++++++ .+.++++++ .|.|+|++.. .....+++++.+++||++.+. +++++++.++++
T Consensus 219 ~g~~~~e~~~i-~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~-i~~~~~a~~~i~ 296 (353)
T cd02930 219 GGSTWEEVVAL-AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNR-INTPEVAERLLA 296 (353)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCC-CCCHHHHHHHHH
Confidence 45688899877 566888874 3567777543 245568999999999999996 678999999999
Q ss_pred cCCCCEEEe
Q 012041 376 KKSCNGLLL 384 (472)
Q Consensus 376 ~~a~d~i~i 384 (472)
.+.+|+|++
T Consensus 297 ~g~~D~V~~ 305 (353)
T cd02930 297 DGDADMVSM 305 (353)
T ss_pred CCCCChhHh
Confidence 999998875
No 54
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.74 E-value=0.0057 Score=58.58 Aligned_cols=67 Identities=13% Similarity=0.296 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhCCeeEE-------eC-CCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 317 SLGDLYKEFVRDFPIVSI-------ED-PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 317 eai~~~~~~l~~~~l~~i-------Ed-P~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
++.++ .+.++++++.+| ++ +..+.+++..+++++..++||+++.. +.+++++.++++.+.+|.+++=
T Consensus 139 ~~~~~-~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Gg-i~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 139 ETLEL-AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGD-IFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCC-CCCHHHHHHHHHhcCCCEEEEc
Confidence 56655 456788898888 76 77777999999999999999999996 6789999999999889999873
No 55
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=94.71 E-value=0.35 Score=48.95 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhCCeeEEeCCCC-cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc-H
Q 012041 315 AQSLGDLYKEFVRDFPIVSIEDPFD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT-V 392 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~l~~iEdP~~-~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG-i 392 (472)
.+..++-+.+ |++.+-..+==-++ .++-+.+.++++++++|+++|=- .++.-+...++. .+|.+.|.|+.+|. -
T Consensus 41 v~atv~Qi~~-L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIH--Fd~~lAl~a~~~-G~~~iRINPGNig~~~ 116 (360)
T PRK00366 41 VEATVAQIKR-LARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIH--FDYRLALAAAEA-GADALRINPGNIGKRD 116 (360)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecC--CCHHHHHHHHHh-CCCEEEECCCCCCchH
Confidence 4444444444 55655333333333 35778999999999999999964 355555555554 48999999999999 7
Q ss_pred HHHHHHHHHHHHcCCcEEecCCCCC
Q 012041 393 TESIQAALDSKSAGWGVMVSHRSGE 417 (472)
Q Consensus 393 tea~~ia~~A~a~g~~~~v~~~~~E 417 (472)
....++++.|+++|+++-+|-++|.
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcc
Confidence 7899999999999999999887653
No 56
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=93.91 E-value=0.49 Score=47.52 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCC-cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccH
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTV 392 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~-~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGi 392 (472)
+.+..++-+.+ |++.+-..+==-++ .++-+.+.++++.+++|+++|=-+ +..-....+ ...+|-+.|.|+.+|.-
T Consensus 32 Dv~atv~QI~~-L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHF--d~~lAl~a~-~~g~dkiRINPGNig~~ 107 (346)
T TIGR00612 32 DIDSTVAQIRA-LEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHF--DYRLAALAM-AKGVAKVRINPGNIGFR 107 (346)
T ss_pred hHHHHHHHHHH-HHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCC--CcHHHHHHH-HhccCeEEECCCCCCCH
Confidence 34444444444 55555333332333 357789999999999999999643 323333333 44699999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEecCCCCC
Q 012041 393 TESIQAALDSKSAGWGVMVSHRSGE 417 (472)
Q Consensus 393 tea~~ia~~A~a~g~~~~v~~~~~E 417 (472)
....++++.|+++|+++-+|-++|.
T Consensus 108 e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 108 ERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCC
Confidence 9999999999999999998887653
No 57
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.58 E-value=0.29 Score=48.94 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=59.2
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSG 416 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~ 416 (472)
++-+.+.++++++++|+++|=- .++.-+...++. .+|-+.|.|+.+|--.....+++.|+.+|+++-+|-+.|
T Consensus 61 e~A~A~~~Ik~~~~vPLVaDiH--f~~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 61 EAAEALKEIKQRLNVPLVADIH--FDYRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred HHHHHHHHHHHhCCCCEEEEee--ccHHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 4567888899999999999964 343444444444 499999999999988889999999999999998887654
No 58
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.16 E-value=0.95 Score=46.30 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=51.5
Q ss_pred ccCHHHHHHHHHHHHhhCC-eeEEeC-------C---------CC---cCCHHHHHHHHhhcCCeEEeCCccccCHHHHH
Q 012041 312 VLSAQSLGDLYKEFVRDFP-IVSIED-------P---------FD---QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIA 371 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~-l~~iEd-------P---------~~---~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~ 371 (472)
++|.++.+++ .+++++.+ +.||+= + .. ..+++..+++++.+++||++.-. +++++++.
T Consensus 224 G~~~~e~~~~-~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i~~~~~~~ 301 (343)
T cd04734 224 GLSPDEALEI-AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGR-IRDPAEAE 301 (343)
T ss_pred CCCHHHHHHH-HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCC-CCCHHHHH
Confidence 4678888877 56688876 676651 1 11 11356667788888888876654 46799999
Q ss_pred HHHHcCCCCEEEe
Q 012041 372 EAIQKKSCNGLLL 384 (472)
Q Consensus 372 ~~i~~~a~d~i~i 384 (472)
++++.+.+|.|.+
T Consensus 302 ~~l~~~~~D~V~~ 314 (343)
T cd04734 302 QALAAGHADMVGM 314 (343)
T ss_pred HHHHcCCCCeeee
Confidence 9999999999875
No 59
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.42 E-value=3.6 Score=38.86 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCC-HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D-~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
+.+++++. .+.+-+.++..+|=++.-.+ ++..++++++.+ +.|-++- +.++++++++++.++-=++.+-.
T Consensus 18 ~~e~a~~~-~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT--Vl~~~~a~~a~~aGA~FivsP~~----- 89 (204)
T TIGR01182 18 DVDDALPL-AKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT--VLNPEQLRQAVDAGAQFIVSPGL----- 89 (204)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCCCEEECCCC-----
Confidence 57788877 56677889999999997554 466888988876 7777775 56899999999988544444432
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcc
Q 012041 392 VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIK 436 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~ 436 (472)
-.++++.|+++|++++-|.+. -|+ +.-|...++..+|
T Consensus 90 ---~~~v~~~~~~~~i~~iPG~~T-ptE----i~~A~~~Ga~~vK 126 (204)
T TIGR01182 90 ---TPELAKHAQDHGIPIIPGVAT-PSE----IMLALELGITALK 126 (204)
T ss_pred ---CHHHHHHHHHcCCcEECCCCC-HHH----HHHHHHCCCCEEE
Confidence 237899999999998665532 221 3444556777776
No 60
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.23 E-value=1.9 Score=44.09 Aligned_cols=93 Identities=6% Similarity=0.103 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-------------cccHHHHHHHHHHHHHcCCc
Q 012041 343 WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ-------------IGTVTESIQAALDSKSAGWG 408 (472)
Q Consensus 343 ~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k-------------~GGitea~~ia~~A~a~g~~ 408 (472)
.+..++|++..+ +||+++.. + +.+.++.+++.+ +|++.+-++- ..-+|...++++.|+.++++
T Consensus 137 ~~~ik~ik~~~~~~~viaGNV-~-T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~ 213 (352)
T PF00478_consen 137 IDMIKKIKKKFPDVPVIAGNV-V-TYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVP 213 (352)
T ss_dssp HHHHHHHHHHSTTSEEEEEEE---SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHhCCCceEEeccc-C-CHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCc
Confidence 356778888887 99999984 3 679999999987 9998877641 34789999999999999999
Q ss_pred EEecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 409 VMVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 409 ~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
|+......- +--.--|+|+++.++..|.+.
T Consensus 214 iIADGGi~~---sGDi~KAla~GAd~VMlG~ll 243 (352)
T PF00478_consen 214 IIADGGIRT---SGDIVKALAAGADAVMLGSLL 243 (352)
T ss_dssp EEEESS-SS---HHHHHHHHHTT-SEEEESTTT
T ss_pred eeecCCcCc---ccceeeeeeecccceeechhh
Confidence 865443222 222455677789999999884
No 61
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=89.62 E-value=0.62 Score=47.23 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCHHHHHHHHhh-----cCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc--------cc-HHHHHHHHHHHHHcC
Q 012041 341 DDWSSWASLQSS-----VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI--------GT-VTESIQAALDSKSAG 406 (472)
Q Consensus 341 ~D~~~~~~L~~~-----~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~--------GG-itea~~ia~~A~a~g 406 (472)
++-+.+++++++ +++|+++|=- .++.-....++. +|-+.|.|+.+ |. -....++++.|+++|
T Consensus 56 ~~a~al~~I~~~l~~~g~~iPlVADIH--Fd~~lAl~a~~~--v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ 131 (359)
T PF04551_consen 56 EAAEALKEIKKRLRALGSPIPLVADIH--FDYRLALEAIEA--VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERG 131 (359)
T ss_dssp HHHHHHHHHHHHHHCTT-SS-EEEEES--TTCHHHHHHHHC---SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCCCCCCeeeecC--CCHHHHHHHHHH--hCeEEECCCcccccccccccchHHHHHHHHHHHHHCC
Confidence 345666677777 7799999964 355666666665 99999999999 88 788899999999999
Q ss_pred CcEEecCCCC
Q 012041 407 WGVMVSHRSG 416 (472)
Q Consensus 407 ~~~~v~~~~~ 416 (472)
+++-+|-++|
T Consensus 132 ipIRIGvN~G 141 (359)
T PF04551_consen 132 IPIRIGVNSG 141 (359)
T ss_dssp -EEEEEEEGG
T ss_pred CCEEEecccc
Confidence 9998887655
No 62
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=89.22 E-value=5.4 Score=42.97 Aligned_cols=115 Identities=9% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHHHhhCCeeEEe-CCCC---cCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-----
Q 012041 319 GDLYKEFVRDFPIVSIE-DPFD---QDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ----- 388 (472)
Q Consensus 319 i~~~~~~l~~~~l~~iE-dP~~---~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k----- 388 (472)
++.... +-+.++..|+ |+-+ ..-++..++|++..+ ++|+++.. .++++++.+++.+ +|+|.+-++-
T Consensus 243 ~~~~~~-l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V--~t~~~a~~~~~aG-ad~I~vg~g~Gs~~~ 318 (495)
T PTZ00314 243 IERAAA-LIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV--VTADQAKNLIDAG-ADGLRIGMGSGSICI 318 (495)
T ss_pred HHHHHH-HHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc--CCHHHHHHHHHcC-CCEEEECCcCCcccc
Confidence 445344 4456776666 4422 233567889998874 99999873 4789999999876 7887654321
Q ss_pred ------c--ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 389 ------I--GTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 389 ------~--GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+ ..++...++++.|+..|++++...... + +.-+--|+++++..+..|.+
T Consensus 319 t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~-~--~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 319 TQEVCAVGRPQASAVYHVARYARERGVPCIADGGIK-N--SGDICKALALGADCVMLGSL 375 (495)
T ss_pred cchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC-C--HHHHHHHHHcCCCEEEECch
Confidence 1 245677788999999999986533221 1 22234455667888887776
No 63
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.15 E-value=3.7 Score=42.32 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=48.5
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeC-------C-CCcCCHHHHHHHHhhcCCeEEeCCcc-----------------ccC
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIED-------P-FDQDDWSSWASLQSSVDIQLVGDDLL-----------------VTN 366 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEd-------P-~~~~D~~~~~~L~~~~~~pI~~dE~~-----------------~~~ 366 (472)
+.+.++++++ .+.+++.++.+|+= | +...++.--+++++.+++||++--.. .++
T Consensus 231 g~~~~e~~~~-~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~ 309 (361)
T cd04747 231 ADTPDELEAL-LAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPAS 309 (361)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCC
Confidence 4688888876 55677777666532 2 22224444466788888887664432 257
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 012041 367 PKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 367 ~~~~~~~i~~~a~d~i~i 384 (472)
+++..++++.+.+|.|.+
T Consensus 310 ~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 310 LDRLLERLERGEFDLVAV 327 (361)
T ss_pred HHHHHHHHHCCCCCeehh
Confidence 899999999999998764
No 64
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.75 E-value=2.9 Score=42.73 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=50.6
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeC--------CC---CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIED--------PF---DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEd--------P~---~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
+++.++++++ .+.+++.++.||+= +. +..+++-.+++++.+++||++--. +++++++.++|+.+.+|
T Consensus 223 G~~~~e~~~i-~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~-i~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 223 GLTVQDYVQY-AKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGL-ITSGAQAEEILQNNRAD 300 (337)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCC-CCCHHHHHHHHHcCCCC
Confidence 5688888877 55678777666631 11 122456667888888899865553 46799999999999999
Q ss_pred EEEe
Q 012041 381 GLLL 384 (472)
Q Consensus 381 ~i~i 384 (472)
.|.+
T Consensus 301 ~V~~ 304 (337)
T PRK13523 301 LIFI 304 (337)
T ss_pred hHHh
Confidence 8653
No 65
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.30 E-value=16 Score=35.56 Aligned_cols=128 Identities=9% Similarity=0.096 Sum_probs=84.6
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhh-cCCeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSS-VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~-~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..++.++.+++ .+.+++.++..||=-++ +.|++..+++.+. .++.+.+--. .+.+++....+.+ +|.+.+-.
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r--~~~~~v~~a~~~g-~~~i~i~~ 90 (259)
T cd07939 15 VAFSREEKLAI-ARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCR--AVKEDIEAALRCG-VTAVHISI 90 (259)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEecc--CCHHHHHHHHhCC-cCEEEEEE
Confidence 45788988877 56689999999998543 3556777888764 3455543321 3578888877764 68777744
Q ss_pred CCc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 387 NQI-------------GTVTESIQAALDSKSAGWGVMVSHRSG-ETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 387 ~k~-------------GGitea~~ia~~A~a~g~~~~v~~~~~-Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+.. -.+..+.+++++|++.|+.+.++.... ...... .+..+...++..+.+.+..+
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G 163 (259)
T cd07939 91 PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG 163 (259)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 221 225567789999999999987776432 233333 44444566788887666544
No 66
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=87.63 E-value=11 Score=35.80 Aligned_cols=117 Identities=9% Similarity=-0.017 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-----
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ----- 388 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k----- 388 (472)
+.+++++....+.+-++..+||=|+..+-++..++|++. ++++.+.- +.++.+....++.+ ++++.|-+++
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~-gi~v~~T~--V~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g 137 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEE-GIKTNVTA--IFSAAQALLAAKAG-ATYVSPFVGRIDDLG 137 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHc-CCceeeEE--ecCHHHHHHHHHcC-CCEEEEecChHhhcC
Confidence 456777664443343578899999998777777777766 78877765 44788888888887 6899999988
Q ss_pred cccHHHHHHHHHHHHHcCCc--EEecCCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 389 IGTVTESIQAALDSKSAGWG--VMVSHRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~--~~v~~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
.-|+.-..++.++++.+|++ +++.+- - + ... +.-+...|+..++++
T Consensus 138 ~dg~~~i~~i~~~~~~~~~~tkil~As~-r-~-~~e-i~~a~~~Gad~vTv~ 185 (211)
T cd00956 138 GDGMELIREIRTIFDNYGFDTKILAASI-R-N-PQH-VIEAALAGADAITLP 185 (211)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEeccc-C-C-HHH-HHHHHHcCCCEEEeC
Confidence 36788899999999999966 333331 1 1 111 222455678888764
No 67
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.59 E-value=7.8 Score=41.81 Aligned_cols=120 Identities=8% Similarity=0.067 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhCCeeEEeCCCCcCC----HHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEecc--
Q 012041 315 AQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV-- 386 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~l~~iEdP~~~~D----~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~-- 386 (472)
..++.++... |-+.++..||=+..+.. ++..+++++..+ ++|.++.. .++++++.+++.++ |++.+-+
T Consensus 240 ~~~~~~ra~~-Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV--~t~e~a~~li~aGA-d~I~vg~g~ 315 (502)
T PRK07107 240 TRDYAERVPA-LVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV--VDREGFRYLAEAGA-DFVKVGIGG 315 (502)
T ss_pred hhhHHHHHHH-HHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc--cCHHHHHHHHHcCC-CEEEECCCC
Confidence 3455556444 44567777776666666 788999999885 89999984 36899999999875 8876522
Q ss_pred C-----C----cc--cHHHHHHHHHHHH----HcC--CcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 387 N-----Q----IG--TVTESIQAALDSK----SAG--WGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 387 ~-----k----~G--Gitea~~ia~~A~----a~g--~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
+ + +| -+|...++++.++ ++| ++++.....- .+.-+--|+|+++..+..|.+.
T Consensus 316 Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir---~~gdi~KAla~GA~~vm~G~~~ 384 (502)
T PRK07107 316 GSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIV---YDYHMTLALAMGADFIMLGRYF 384 (502)
T ss_pred CcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCC---chhHHHHHHHcCCCeeeeChhh
Confidence 1 2 22 2445555555433 347 7765433221 1222334566788888888874
No 68
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.11 E-value=5.2 Score=40.58 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC-------C------cccHHHHHHHHHHHHHcCCcE
Q 012041 344 SSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN-------Q------IGTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 344 ~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~-------k------~GGitea~~ia~~A~a~g~~~ 409 (472)
+..+++++..+ ++|+++.. + +++.++.+++.+ +|++.+-++ + .+=+|..+++++.|+..|+++
T Consensus 140 ~~ik~ik~~~P~~~vIaGNV-~-T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpi 216 (346)
T PRK05096 140 QFVAKAREAWPDKTICAGNV-V-TGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQI 216 (346)
T ss_pred HHHHHHHHhCCCCcEEEecc-c-CHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCE
Confidence 45667777775 89999984 4 578888888875 787764442 1 256899999999999999998
Q ss_pred EecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 410 MVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 410 ~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
+.....-.+++ .--|+++++.++.+|++.
T Consensus 217 IADGGi~~sGD---I~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 217 VSDGGCTVPGD---VAKAFGGGADFVMLGGML 245 (346)
T ss_pred EecCCcccccH---HHHHHHcCCCEEEeChhh
Confidence 65443322222 234566788888888874
No 69
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=87.10 E-value=8 Score=39.86 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=47.8
Q ss_pred ccCHHH-HHHHHHHHHhhCCeeEEeCCCC------cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 312 VLSAQS-LGDLYKEFVRDFPIVSIEDPFD------QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 312 ~~s~~e-ai~~~~~~l~~~~l~~iEdP~~------~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
+++.+| ++++ .+++++.++.+|+=-.. .-...-.+++++.+++||++.-. . +++...++|+.+.+|.|.+
T Consensus 244 G~~~~e~~~~~-~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~-~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 244 GPNEEADALYL-IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-Y-TAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CCCHHHHHHHH-HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-C-CHHHHHHHHHcCCCCEEEE
Confidence 467777 6776 56678777766642211 00123347788888888876554 3 6899999999999999875
No 70
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=86.88 E-value=19 Score=35.37 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=85.3
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--CC-CcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCC---CCEEE
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--PF-DQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKS---CNGLL 383 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P~-~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a---~d~i~ 383 (472)
..++.++.+++ .+.+.+.++..||= |. .++|++..+.+++..+ +.+.+== ..+..++..+++.+. +|.+.
T Consensus 15 ~~~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~--r~~~~~v~~a~~~~~~~~~~~i~ 91 (268)
T cd07940 15 VSLTPEEKLEI-ARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLA--RAVKKDIDAAAEALKPAKVDRIH 91 (268)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEc--cCCHhhHHHHHHhCCCCCCCEEE
Confidence 35788888877 55688999999997 54 4678888888887554 5543211 124688888877763 78877
Q ss_pred eccCC----------c---ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhH---HHHHHHhhcCCCcccCCCCCc
Q 012041 384 LKVNQ----------I---GTVTESIQAALDSKSAGWGVMVSHRS-GETEDNF---IADLSVGLASGQIKTGAPCRS 443 (472)
Q Consensus 384 ik~~k----------~---GGitea~~ia~~A~a~g~~~~v~~~~-~Et~~s~---~a~lAva~~~~~i~~g~~~~~ 443 (472)
+-.+- + --+..+.++++.|++.|+.+.++... ....... .+.-+..+++..+.+.+..+.
T Consensus 92 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~ 168 (268)
T cd07940 92 TFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGY 168 (268)
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 74321 1 12456778899999999998877632 2233443 344446667788876666443
No 71
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.37 E-value=4.4 Score=41.59 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=46.0
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEe-------CCC---CcCCHHHHHHHHhhc--CCeEEeCCccccCHHHHHHHHHcCCC
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIE-------DPF---DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSC 379 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iE-------dP~---~~~D~~~~~~L~~~~--~~pI~~dE~~~~~~~~~~~~i~~~a~ 379 (472)
+++.++.+++ .+.+++.++.||+ .+. +......++.+++.. ++||++--. +++++++.++++.+ +
T Consensus 231 g~~~ee~~~i-~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g-a 307 (353)
T cd04735 231 GIRMEDTLAL-VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG-A 307 (353)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-C
Confidence 4678888877 5668888888776 111 112345566677766 577766543 46789999999885 7
Q ss_pred CEEE
Q 012041 380 NGLL 383 (472)
Q Consensus 380 d~i~ 383 (472)
|.|.
T Consensus 308 D~V~ 311 (353)
T cd04735 308 DLVA 311 (353)
T ss_pred ChHH
Confidence 8654
No 72
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=85.99 E-value=5.2 Score=40.51 Aligned_cols=69 Identities=13% Similarity=0.323 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCeeEE-------eCCC-CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 317 SLGDLYKEFVRDFPIVSI-------EDPF-DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 317 eai~~~~~~l~~~~l~~i-------EdP~-~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
+.+++ .+.+++.++.+| ++.. ...|++..+++++++++||++.-- +++++++.++++...+|.+++-=+
T Consensus 150 ~~~~~-a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg-I~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 150 NCVEI-AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD-ITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred hHHHH-HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC-CCCHHHHHHHHhccCCCEEEEChH
Confidence 34444 455777776666 2322 235788889999999999977664 678999999999888999997533
No 73
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=85.76 E-value=7.3 Score=42.13 Aligned_cols=97 Identities=10% Similarity=0.076 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhCC--eeEEeCCCCcCCHHHHHHHHhh-----cCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 315 AQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSS-----VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~--l~~iEdP~~~~D~~~~~~L~~~-----~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
.+..++-+.+ |.+.+ |.-+==|- .++-+.+++++++ +.+|+++|=- .++.-....++. +|-+.|.|+
T Consensus 44 ~~atv~Qi~~-L~~aGceiVRvtvp~-~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~A~~a~~~--vdkiRINPG 117 (606)
T PRK00694 44 VDGTVRQICA-LQEWGCDIVRVTVQG-LKEAQACEHIKERLIQQGISIPLVADIH--FFPQAAMHVADF--VDKVRINPG 117 (606)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEcCCC-HHHHHhHHHHHHHHhccCCCCCEEeecC--CChHHHHHHHHh--cCceEECCc
Confidence 4444444444 45555 44443332 3567889999998 6799999964 366665566654 999999999
Q ss_pred Cccc----------------------HHHHHHHHHHHHHcCCcEEecCCCCC
Q 012041 388 QIGT----------------------VTESIQAALDSKSAGWGVMVSHRSGE 417 (472)
Q Consensus 388 k~GG----------------------itea~~ia~~A~a~g~~~~v~~~~~E 417 (472)
..|. -.....+++.|+++|+++-+|-+.|.
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GS 169 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGS 169 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcC
Confidence 9998 56888999999999999988887653
No 74
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=85.64 E-value=12 Score=36.51 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhCCeeEEe-CCCCc------CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC-C
Q 012041 317 SLGDLYKEFVRDFPIVSIE-DPFDQ------DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN-Q 388 (472)
Q Consensus 317 eai~~~~~~l~~~~l~~iE-dP~~~------~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~-k 388 (472)
+.+++ .+.+++.++.+|. ..+.. -|++.++++++.+++||++--- +.+++++.++++.+.+|.+.+--. .
T Consensus 156 ~~~~~-~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GG-i~s~~di~~~~~~g~~dgv~~g~a~~ 233 (254)
T TIGR00735 156 DAVEW-AKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGG-AGKPEHFYEAFTKGKADAALAASVFH 233 (254)
T ss_pred CHHHH-HHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCC-CCCHHHHHHHHHcCCcceeeEhHHHh
Confidence 34444 4446676644332 12222 3678889999999888854442 568999999999988998776433 2
Q ss_pred cccHHHHHHHHHHHHHcCCcE
Q 012041 389 IGTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~~ 409 (472)
-|.+ ...++.+.++++|+++
T Consensus 234 ~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 234 YREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCC-CHHHHHHHHHHCCCcc
Confidence 3444 4667778888888874
No 75
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=85.33 E-value=12 Score=35.34 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCC-HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D-~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
+.++++.. .+.+-+-++.-||=|+.-.+ .+..+.|++..+ +.|-++- +.++++++++++.++-=+|.|-++
T Consensus 23 ~~e~a~~~-a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGT--VL~~~q~~~a~~aGa~fiVsP~~~---- 95 (211)
T COG0800 23 DVEEALPL-AKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGT--VLNPEQARQAIAAGAQFIVSPGLN---- 95 (211)
T ss_pred CHHHHHHH-HHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEcccc--ccCHHHHHHHHHcCCCEEECCCCC----
Confidence 57888887 45566789999999997554 577889999887 7777775 458999999999987666666444
Q ss_pred HHHHHHHHHHHHHcCCcEEecCC
Q 012041 392 VTESIQAALDSKSAGWGVMVSHR 414 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~~ 414 (472)
.++++.|..+|++++-|++
T Consensus 96 ----~ev~~~a~~~~ip~~PG~~ 114 (211)
T COG0800 96 ----PEVAKAANRYGIPYIPGVA 114 (211)
T ss_pred ----HHHHHHHHhCCCcccCCCC
Confidence 2789999999999876663
No 76
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.10 E-value=13 Score=35.03 Aligned_cols=107 Identities=9% Similarity=0.012 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcC-CHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQD-DWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~-D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
+.+++++. .+.+-+-++..||=++.-. -++..++|+++.+ +.|-++- +.+++++++.++.++-=++.+-+.
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT--Vl~~e~a~~ai~aGA~FivSP~~~---- 86 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGT--ILNAKQFEDAAKAGSRFIVSPGTT---- 86 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEe--CcCHHHHHHHHHcCCCEEECCCCC----
Confidence 67888877 5667778999999999754 4566788888876 6665564 568899999999986544444332
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcc
Q 012041 392 VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIK 436 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~ 436 (472)
.++++.|+++|+.++-|.+. -|+ +.-|...++..+|
T Consensus 87 ----~~vi~~a~~~~i~~iPG~~T-ptE----i~~A~~~Ga~~vK 122 (201)
T PRK06015 87 ----QELLAAANDSDVPLLPGAAT-PSE----VMALREEGYTVLK 122 (201)
T ss_pred ----HHHHHHHHHcCCCEeCCCCC-HHH----HHHHHHCCCCEEE
Confidence 36888999999998655532 222 2334555677776
No 77
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.07 E-value=11 Score=35.87 Aligned_cols=108 Identities=12% Similarity=0.056 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCC-HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D-~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
+.+++++. .+.+.+.++..||=++...+ ++..++|+++.+ +.|-+|- +++.++++..++.|+-=++.+ +
T Consensus 25 ~~~~a~~i-~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGT--Vl~~~~a~~a~~aGA~FivsP------~ 95 (212)
T PRK05718 25 KLEDAVPL-AKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGT--VLNPEQLAQAIEAGAQFIVSP------G 95 (212)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEee--ccCHHHHHHHHHcCCCEEECC------C
Confidence 67888877 56678899999999987544 466788888887 6666665 567899999999885434334 3
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 392 VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
+++ ++++.|.++++.++-|++. -+ . +.-|..+++..+|+
T Consensus 96 ~~~--~vi~~a~~~~i~~iPG~~T-pt--E--i~~a~~~Ga~~vKl 134 (212)
T PRK05718 96 LTP--PLLKAAQEGPIPLIPGVST-PS--E--LMLGMELGLRTFKF 134 (212)
T ss_pred CCH--HHHHHHHHcCCCEeCCCCC-HH--H--HHHHHHCCCCEEEE
Confidence 334 6788888899997545532 11 1 34466677888875
No 78
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.74 E-value=9.7 Score=38.44 Aligned_cols=69 Identities=9% Similarity=0.298 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCCeeEE-------eCCCC--cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 317 SLGDLYKEFVRDFPIVSI-------EDPFD--QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 317 eai~~~~~~l~~~~l~~i-------EdP~~--~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
+.+++ .+.+++.++.+| +|... +-|++..+++++.+++||++.-. +++++++.++++...||.|+|-=+
T Consensus 149 ~~~~~-a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGd-I~t~~da~~~l~~~g~DgVmiGRg 226 (312)
T PRK10550 149 RKFEI-ADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGE-IWDWQSAQQCMAITGCDAVMIGRG 226 (312)
T ss_pred HHHHH-HHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCC-cCCHHHHHHHHhccCCCEEEEcHH
Confidence 44545 566777775544 22222 12788899999999999988775 678999999999999999997443
No 79
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.45 E-value=35 Score=31.75 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCC--CC-cCCHHHHHHHHhhc-CCeEEeCCccccCHH--HHHHHHHcCCCCEEEeccC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDP--FD-QDDWSSWASLQSSV-DIQLVGDDLLVTNPK--RIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP--~~-~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~--~~~~~i~~~a~d~i~ik~~ 387 (472)
+.+++++. .+.+ +.++.|||-. +. +.-.+..++|++.. +..+..|=- +.++. +++++.+.+ +|++.+...
T Consensus 10 ~~~~a~~~-~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k-~~d~~~~~~~~~~~~G-ad~i~vh~~ 85 (206)
T TIGR03128 10 DIEEALEL-AEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLK-TMDAGEYEAEQAFAAG-ADIVTVLGV 85 (206)
T ss_pred CHHHHHHH-HHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEe-eccchHHHHHHHHHcC-CCEEEEecc
Confidence 57788876 4556 5679999995 42 34477888888875 456665531 22333 566666665 788877654
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEec-CCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 388 QIGTVTESIQAALDSKSAGWGVMVS-HRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 388 k~GGitea~~ia~~A~a~g~~~~v~-~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
. + .....++.+.|+++|+++++. ++. .+... -+..+.-.++.++++.
T Consensus 86 ~-~-~~~~~~~i~~~~~~g~~~~~~~~~~-~t~~~-~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 86 A-D-DATIKGAVKAAKKHGKEVQVDLINV-KDKVK-RAKELKELGADYIGVH 133 (206)
T ss_pred C-C-HHHHHHHHHHHHHcCCEEEEEecCC-CChHH-HHHHHHHcCCCEEEEc
Confidence 3 2 234567888999999999876 333 22211 1222344467777653
No 80
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=84.03 E-value=4.3 Score=41.91 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=69.1
Q ss_pred CcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC-----------Cc--ccHHHHHHHHHHHHH
Q 012041 339 DQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN-----------QI--GTVTESIQAALDSKS 404 (472)
Q Consensus 339 ~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~-----------k~--GGitea~~ia~~A~a 404 (472)
....++..+.+++..+ .+|+++.. +| .+..+.+|..+ +|.+.+-++ -| +=-|...+++.+|..
T Consensus 276 S~~qiemik~iK~~yP~l~ViaGNV-VT-~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 276 SIYQLEMIKYIKETYPDLQIIAGNV-VT-KEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred chhHHHHHHHHHhhCCCceeeccce-ee-HHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 3346678888888887 89999995 55 59999999886 788876553 22 235789999999999
Q ss_pred cCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 405 AGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 405 ~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+|++||.-+.. .+...++ =|+++++.++..|++
T Consensus 353 ~gvpviADGGi--q~~Ghi~-KAl~lGAstVMmG~l 385 (503)
T KOG2550|consen 353 FGVPCIADGGI--QNVGHVV-KALGLGASTVMMGGL 385 (503)
T ss_pred cCCceeecCCc--CccchhH-hhhhcCchhheecce
Confidence 99999754422 2222222 466777878887776
No 81
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=83.81 E-value=8.6 Score=39.76 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 343 ~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
++.-+++++.+++||++--. ++++++..++++.+.+|.|.+
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~-i~~~~~~~~~l~~g~~D~V~~ 318 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGR-FTSPDKMVEVVKSGILDLIGA 318 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 44456788888988876543 568999999999999999875
No 82
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=83.70 E-value=25 Score=36.23 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=82.9
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--CCC-cCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--PFD-QDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P~~-~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..++.++-+++ .+.+++.++..||= |.. ++|++..+.+.+... ..|++-= ..+.++++.+++.+ +|.+.+-+
T Consensus 17 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~--r~~~~di~~a~~~g-~~~i~i~~ 92 (363)
T TIGR02090 17 VSLTVEQKVEI-ARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLA--RALKKDIDKAIDCG-VDSIHTFI 92 (363)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEc--ccCHHHHHHHHHcC-cCEEEEEE
Confidence 45788998877 56789999999997 533 567777777776543 5554322 23579999988876 67777732
Q ss_pred C-------------CcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhHHHH---HHHhhcCCCcccCCC
Q 012041 387 N-------------QIGTVTESIQAALDSKSAGWGVMVSHR-SGETEDNFIAD---LSVGLASGQIKTGAP 440 (472)
Q Consensus 387 ~-------------k~GGitea~~ia~~A~a~g~~~~v~~~-~~Et~~s~~a~---lAva~~~~~i~~g~~ 440 (472)
. .-.-+..+.+.+++|++.|+.+.++-. ...+....... .+...++..+.+.+.
T Consensus 93 ~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT 163 (363)
T TIGR02090 93 ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT 163 (363)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 2 112356777899999999998866542 23334444443 455567777765544
No 83
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=83.70 E-value=12 Score=38.83 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=50.7
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC-------CC---C-----cCC-HHHHHHHHhhcCCeEEeCCccccCHHHHHHHH
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED-------PF---D-----QDD-WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI 374 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd-------P~---~-----~~D-~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i 374 (472)
.+++.++++++ .+.+++.++.||+= +. + +.. +.--+++++.+++||++--. +++++++.+++
T Consensus 247 ~g~~~e~~~~~-~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~-i~~~~~~~~~l 324 (382)
T cd02931 247 KGRDLEEGLKA-AKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGR-MEDPELASEAI 324 (382)
T ss_pred CCCCHHHHHHH-HHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCC-CCCHHHHHHHH
Confidence 46789998877 56678777666631 11 0 011 23346678888888877664 57899999999
Q ss_pred HcCCCCEEEe
Q 012041 375 QKKSCNGLLL 384 (472)
Q Consensus 375 ~~~a~d~i~i 384 (472)
+.+.+|.|.+
T Consensus 325 ~~g~~D~V~~ 334 (382)
T cd02931 325 NEGIADMISL 334 (382)
T ss_pred HcCCCCeeee
Confidence 9999999875
No 84
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=83.23 E-value=35 Score=33.92 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=59.7
Q ss_pred ccCHHHHHHHHHHHHhh-CCeeEEe--------CCCCcCCH-----HHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 312 VLSAQSLGDLYKEFVRD-FPIVSIE--------DPFDQDDW-----SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~-~~l~~iE--------dP~~~~D~-----~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
..+.+++++...+++++ .++.=|= +|+++++- .-.+.|++..++||.-|-. +++-++..++.|
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~---~~~va~~AL~~G 110 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS---KPEVIRESAKAG 110 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC---CHHHHHHHHHcC
Confidence 34778888886676664 3332221 33433221 1235556566799999863 578888899886
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSG 416 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~ 416 (472)
+|+|| .+.|+++- +++..+..+|..+++-|+.+
T Consensus 111 -adiIN----DI~g~~d~-~~~~~~a~~~~~vVlmh~~g 143 (282)
T PRK11613 111 -AHIIN----DIRSLSEP-GALEAAAETGLPVCLMHMQG 143 (282)
T ss_pred -CCEEE----ECCCCCCH-HHHHHHHHcCCCEEEEcCCC
Confidence 78765 23344432 56666788899998888643
No 85
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=82.58 E-value=8.9 Score=38.93 Aligned_cols=92 Identities=7% Similarity=0.051 Sum_probs=64.5
Q ss_pred HHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC---C--------c--ccHHHHHHHHHHHHHcCCcE
Q 012041 344 SSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN---Q--------I--GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 344 ~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~---k--------~--GGitea~~ia~~A~a~g~~~ 409 (472)
+..++|++..+ .+|+++.. -++++++.+++.+ +|++.+-++ . + .-+|...++++.|+..++++
T Consensus 139 ~~ik~ir~~~p~~~viaGNV--~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~V 215 (343)
T TIGR01305 139 EFVKLVREAFPEHTIMAGNV--VTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHI 215 (343)
T ss_pred HHHHHHHhhCCCCeEEEecc--cCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeE
Confidence 45677777775 88999984 3689999999875 788765532 1 2 36888999999999889998
Q ss_pred EecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 410 MVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 410 ~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
+.-...-.++ -+--|+|+++.++.+|++.
T Consensus 216 IaDGGIr~~g---DI~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 216 ISDGGCTCPG---DVAKAFGAGADFVMLGGMF 244 (343)
T ss_pred EEcCCcCchh---HHHHHHHcCCCEEEECHhh
Confidence 6544322222 1234566788888888773
No 86
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=82.23 E-value=13 Score=37.91 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeC--CC-----CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIED--PF-----DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEd--P~-----~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.+.++++++ .+++++.++.+|+= .. ....++..+++++.+++||++--. ++ ++++.++++.+.+|.|.+
T Consensus 238 ~~~ee~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i~-~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 238 DPEATFSYL-AKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGG-YD-AESAEAALADGKADLVAF 313 (338)
T ss_pred CCHHHHHHH-HHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECC-CC-HHHHHHHHHcCCCCEEEe
Confidence 477888876 56678777666542 11 234567778889999988876664 34 899999999999998875
No 87
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.96 E-value=52 Score=32.11 Aligned_cols=128 Identities=10% Similarity=-0.011 Sum_probs=83.5
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--------------CCCcCCHHHHHHHHhhcC-CeE--EeCCccccCHHHHHHH
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--------------PFDQDDWSSWASLQSSVD-IQL--VGDDLLVTNPKRIAEA 373 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--------------P~~~~D~~~~~~L~~~~~-~pI--~~dE~~~~~~~~~~~~ 373 (472)
..++.++.+++ .+.+.+.++..||= |...++++..+++++..+ +.+ ...-. ..+..++...
T Consensus 17 ~~~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~-~~~~~~i~~a 94 (263)
T cd07943 17 HQFTLEQVRAI-ARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG-IGTVDDLKMA 94 (263)
T ss_pred eecCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC-ccCHHHHHHH
Confidence 35688888877 55688899999997 455667788888876653 443 22221 3356888887
Q ss_pred HHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 374 IQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHR-SGETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 374 i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~-~~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
++. .+|.+.+-.... =+..+.++++.|++.|+.+.+.-+ ........ .+..+..+++..+.+.+..+
T Consensus 95 ~~~-g~~~iri~~~~s-~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G 165 (263)
T cd07943 95 ADL-GVDVVRVATHCT-EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAG 165 (263)
T ss_pred HHc-CCCEEEEEechh-hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 765 488888754332 245788899999999988755431 22223333 34445566778777666544
No 88
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=81.88 E-value=19 Score=33.83 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCC-HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D-~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
+.+++.+. .+.+-+-++..+|=++.-.+ ++..++++++.+ +-|-++- +.+.++++++++.++-=++.|-
T Consensus 18 ~~~~a~~~-~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGT--V~~~e~a~~a~~aGA~FivSP~------ 88 (196)
T PF01081_consen 18 DPEDAVPI-AEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGT--VLTAEQAEAAIAAGAQFIVSPG------ 88 (196)
T ss_dssp SGGGHHHH-HHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES----SHHHHHHHHHHT-SEEEESS------
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEe--ccCHHHHHHHHHcCCCEEECCC------
Confidence 45677766 55567789999999997655 466677888887 6666665 5689999999999876555553
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcc--cCCCCCch
Q 012041 392 VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIK--TGAPCRSE 444 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~--~g~~~~~e 444 (472)
++ .++++.|+++|+.++-|.+. -|+ +.-|.-.++..+| |....++.
T Consensus 89 ~~--~~v~~~~~~~~i~~iPG~~T-ptE----i~~A~~~G~~~vK~FPA~~~GG~ 136 (196)
T PF01081_consen 89 FD--PEVIEYAREYGIPYIPGVMT-PTE----IMQALEAGADIVKLFPAGALGGP 136 (196)
T ss_dssp ----HHHHHHHHHHTSEEEEEESS-HHH----HHHHHHTT-SEEEETTTTTTTHH
T ss_pred CC--HHHHHHHHHcCCcccCCcCC-HHH----HHHHHHCCCCEEEEecchhcCcH
Confidence 22 36899999999998766642 121 2334556777776 54544433
No 89
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=81.43 E-value=15 Score=41.92 Aligned_cols=72 Identities=6% Similarity=-0.035 Sum_probs=50.5
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--------CCC----cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--------PFD----QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--------P~~----~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a 378 (472)
.+++.++++++ .+.+++.++.||+= +.+ .....-.+++++.+++||++--. +++++++.++++.+.
T Consensus 633 ~g~~~~~~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-i~~~~~a~~~l~~g~ 710 (765)
T PRK08255 633 GGNTPDDAVEI-ARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGA-ISEADHVNSIIAAGR 710 (765)
T ss_pred CCCCHHHHHHH-HHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCC-CCCHHHHHHHHHcCC
Confidence 35788898876 56688887666641 110 01123346788888888866654 578999999999999
Q ss_pred CCEEEe
Q 012041 379 CNGLLL 384 (472)
Q Consensus 379 ~d~i~i 384 (472)
+|.|.+
T Consensus 711 ~D~v~~ 716 (765)
T PRK08255 711 ADLCAL 716 (765)
T ss_pred cceeeE
Confidence 999876
No 90
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.89 E-value=21 Score=35.20 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHH
Q 012041 316 QSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTE 394 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGite 394 (472)
++.++.+.+.++++++.++=+|+.+.+.+-+.++ .+ ..|.+.+. ++ .++.+.+ .+.--.|.+|-+..|.+.+
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~---vd~~kIga~~~--~n-~~LL~~~-a~~gkPV~lk~G~~~s~~e 149 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY---ADMLQIGSRNM--QN-FELLKEV-GKTKKPILLKRGMSATLEE 149 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh---CCEEEECcccc--cC-HHHHHHH-hcCCCcEEEeCCCCCCHHH
Confidence 4556667888899999999999999888888766 34 46666653 45 4444444 2345578888888888888
Q ss_pred HHHHHHHHHHcCC-cEEecCC
Q 012041 395 SIQAALDSKSAGW-GVMVSHR 414 (472)
Q Consensus 395 a~~ia~~A~a~g~-~~~v~~~ 414 (472)
+..+++..+..|- .+++-|+
T Consensus 150 ~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 150 WLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred HHHHHHHHHhcCCCeEEEEEC
Confidence 8888888887765 5556553
No 91
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=80.88 E-value=13 Score=36.49 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHH
Q 012041 316 QSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTE 394 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGite 394 (472)
++-++.+.+.++++++.|+=+|++.++.+-..++ .+ ..|.+.+ +++.. +.+.+. +.--.|++|-+..+.+.+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~---~d~lkI~s~~--~~n~~-LL~~~a-~~gkPVilk~G~~~t~~e 147 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY---ADILQIGARN--MQNFE-LLKEVG-KQGKPVLLKRGMGNTIEE 147 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh---CCEEEECccc--ccCHH-HHHHHh-cCCCcEEEeCCCCCCHHH
Confidence 4556677888899999999999998888777665 34 4555665 34533 333332 234578888888888888
Q ss_pred HHHHHHHHHHcCC-cEEecC
Q 012041 395 SIQAALDSKSAGW-GVMVSH 413 (472)
Q Consensus 395 a~~ia~~A~a~g~-~~~v~~ 413 (472)
+..+++..+..|- .+++-|
T Consensus 148 ~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 148 WLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred HHHHHHHHHHcCCCcEEEEE
Confidence 8888888887775 466655
No 92
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=80.74 E-value=6.7 Score=39.49 Aligned_cols=68 Identities=12% Similarity=0.424 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCeeEE-------eCCCC-cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 315 AQSLGDLYKEFVRDFPIVSI-------EDPFD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~l~~i-------EdP~~-~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.++.+++ .+.+++.++.+| +|-.. +-||+..+++++.+++||++.-- +++++|+.+.++.-.+|.++|
T Consensus 137 ~~~~~~~-~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGd-I~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 137 PEETIEF-ARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGD-IFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp CHHHHHH-HHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS---SHHHHHHHCCCH-SSEEEE
T ss_pred hhHHHHH-HHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCc-cCCHHHHHHHHHhcCCcEEEE
Confidence 3556666 566888998777 23322 56899999999999999988775 678999999988767898885
No 93
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.30 E-value=52 Score=33.91 Aligned_cols=127 Identities=7% Similarity=0.071 Sum_probs=81.9
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..++.++-+++ .+.|++.++..||=-++ ++|++..+++.+... ..+++= ...+.++++.+++.+ +|.+.+-+
T Consensus 18 ~~~s~~~k~~i-a~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~--~r~~~~di~~a~~~g-~~~i~i~~ 93 (365)
T TIGR02660 18 VAFTAAEKLAI-ARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAW--CRARDADIEAAARCG-VDAVHISI 93 (365)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEE--cCCCHHHHHHHHcCC-cCEEEEEE
Confidence 35789998877 56689999999999544 345677888876633 444332 123578888887764 56666554
Q ss_pred CCc-------------ccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHHHH---HHHhhcCCCcccCCCC
Q 012041 387 NQI-------------GTVTESIQAALDSKSAGWGVMVSHRSG-ETEDNFIAD---LSVGLASGQIKTGAPC 441 (472)
Q Consensus 387 ~k~-------------GGitea~~ia~~A~a~g~~~~v~~~~~-Et~~s~~a~---lAva~~~~~i~~g~~~ 441 (472)
.-. --+..+.+++++|+++|+.+.++.... .+...+.+. .+...++..+.+.+..
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~ 165 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTV 165 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccC
Confidence 321 124445588999999999988776432 334444443 3455677777655543
No 94
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=79.29 E-value=18 Score=34.88 Aligned_cols=60 Identities=8% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHhhCCee--EEeCCCCc---CCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 323 KEFVRDFPIV--SIEDPFDQ---DDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 323 ~~~l~~~~l~--~iEdP~~~---~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.+.+++.+.. .+.+=.+. -|++..+++++.++ +||+|.-. +.+.+|+.++++. .+|.|++
T Consensus 154 a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGg-I~s~eda~e~l~~-GAd~Vmv 219 (231)
T TIGR00736 154 ALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNS-IDDIESAKEMLKA-GADFVSV 219 (231)
T ss_pred HHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECC-cCCHHHHHHHHHh-CCCeEEE
Confidence 5557776644 44443332 27899999999985 99999885 7889999999985 5888886
No 95
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.01 E-value=14 Score=35.14 Aligned_cols=108 Identities=14% Similarity=-0.060 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCC-HHHHHHHHhhcC----CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D-~~~~~~L~~~~~----~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k 388 (472)
+.++++.. .+.+-+-++..+|=++...+ ++..++|+++.+ +.|-++- +.+++++++.++.|+-=++.|-.+
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT--V~~~~~~~~a~~aGA~FivsP~~~- 98 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT--VLDAVTARLAILAGAQFIVSPSFN- 98 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee--CCCHHHHHHHHHcCCCEEECCCCC-
Confidence 56788776 56677889999999997554 567899988873 5555554 678999999999886444433222
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 389 IGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
.++++.|+.+|++++-|++ ..++ +.-|...++.++|+
T Consensus 99 -------~~v~~~~~~~~i~~iPG~~-T~~E----~~~A~~~Gad~vkl 135 (213)
T PRK06552 99 -------RETAKICNLYQIPYLPGCM-TVTE----IVTALEAGSEIVKL 135 (213)
T ss_pred -------HHHHHHHHHcCCCEECCcC-CHHH----HHHHHHcCCCEEEE
Confidence 3678889999999865553 2222 23344567888875
No 96
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.74 E-value=18 Score=37.38 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=47.6
Q ss_pred CccCHHHHHHHHHHHHhhCC-eeEEe------CCCCcCCHH------H-HHHHHhhcCCeEEeCCccccCHHHHHHHHHc
Q 012041 311 HVLSAQSLGDLYKEFVRDFP-IVSIE------DPFDQDDWS------S-WASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~-l~~iE------dP~~~~D~~------~-~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~ 376 (472)
.+++.++.+++ .+.|++.+ +.+|. ++...-... . -..++....+|+++--. .++++...++++.
T Consensus 232 ~g~~~~e~~~l-a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~-i~~~~~Ae~~l~~ 309 (363)
T COG1902 232 GGLTIEEAVEL-AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGG-INDPEQAEEILAS 309 (363)
T ss_pred CCCCHHHHHHH-HHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCC-CCCHHHHHHHHHc
Confidence 46788898876 66788877 44442 211111111 1 22356666788877764 6789999999999
Q ss_pred CCCCEEEe
Q 012041 377 KSCNGLLL 384 (472)
Q Consensus 377 ~a~d~i~i 384 (472)
+.+|.|-+
T Consensus 310 g~aDlVa~ 317 (363)
T COG1902 310 GRADLVAM 317 (363)
T ss_pred CCCCEEEe
Confidence 99998764
No 97
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=78.49 E-value=21 Score=36.46 Aligned_cols=92 Identities=22% Similarity=0.189 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHH
Q 012041 316 QSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTE 394 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGite 394 (472)
++-++.+.+.++++++.++-+|+++++.+-..++ .+ +.|.+.+ .++..-++.+-+ .---+.+|-+..+++.+
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~---vd~lqIgAr~--~~N~~LL~~va~--~~kPViLk~G~~~ti~E 215 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY---VDILQIGARN--MQNFDLLKEVGK--TNKPVLLKRGMSATIEE 215 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh---CCeEEECccc--ccCHHHHHHHHc--CCCcEEEeCCCCCCHHH
Confidence 4556677888899999999999998888877765 45 5666665 356444444432 34478888888889999
Q ss_pred HHHHHHHHHHcCC-cEEecCC
Q 012041 395 SIQAALDSKSAGW-GVMVSHR 414 (472)
Q Consensus 395 a~~ia~~A~a~g~-~~~v~~~ 414 (472)
++.++++..+.|- .+++-|+
T Consensus 216 ~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 216 WLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred HHHHHHHHHHcCCCeEEEEEC
Confidence 9999998888775 5666664
No 98
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=78.30 E-value=72 Score=31.38 Aligned_cols=130 Identities=8% Similarity=0.013 Sum_probs=79.3
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--CC-CcCCHHHHHHHHhhc--CCeEEeC----Cc--cccCHHHHHHHHHcCCC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--PF-DQDDWSSWASLQSSV--DIQLVGD----DL--LVTNPKRIAEAIQKKSC 379 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P~-~~~D~~~~~~L~~~~--~~pI~~d----E~--~~~~~~~~~~~i~~~a~ 379 (472)
..++.++.+++ .+.|.+.++..||= |. .+.|.+.++++++.. +..+++- +. ...+...++.+++. .+
T Consensus 15 ~~~s~e~k~~i-~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~-g~ 92 (273)
T cd07941 15 ISFSVEDKLRI-ARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEA-GT 92 (273)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhC-CC
Confidence 45788888877 56688999999997 44 667788888887653 3443321 10 01122345555554 46
Q ss_pred CEEEeccCCc-------------ccHHHHHHHHHHHHHcCCcEEecCCC----CCChhhHHHHHH---HhhcCCCcccCC
Q 012041 380 NGLLLKVNQI-------------GTVTESIQAALDSKSAGWGVMVSHRS----GETEDNFIADLS---VGLASGQIKTGA 439 (472)
Q Consensus 380 d~i~ik~~k~-------------GGitea~~ia~~A~a~g~~~~v~~~~----~Et~~s~~a~lA---va~~~~~i~~g~ 439 (472)
+.+.+-++-. --+..+++++++|+++|+.+.++.+. ..+.....++++ ..+++..+.+.+
T Consensus 93 ~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~D 172 (273)
T cd07941 93 PVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCD 172 (273)
T ss_pred CEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 7777644321 23456788999999999998664321 123344445544 566777776555
Q ss_pred CCC
Q 012041 440 PCR 442 (472)
Q Consensus 440 ~~~ 442 (472)
..+
T Consensus 173 T~G 175 (273)
T cd07941 173 TNG 175 (273)
T ss_pred CCC
Confidence 533
No 99
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.17 E-value=16 Score=37.45 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=70.6
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
+++. ++-++.+.+..+++++.++=+|+..++.+-..++ .+ +.|.+.+ .++ .++.+.+. +.--.|++|-+..
T Consensus 147 ~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~---~d~lqIga~~--~~n-~~LL~~va-~t~kPVllk~G~~ 218 (352)
T PRK13396 147 QGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEV---ADVIQVGARN--MQN-FSLLKKVG-AQDKPVLLKRGMA 218 (352)
T ss_pred CCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh---CCeEEECccc--ccC-HHHHHHHH-ccCCeEEEeCCCC
Confidence 4455 6777788888889999999999998888887776 45 5666666 345 34433332 2345888999999
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecCC
Q 012041 390 GTVTESIQAALDSKSAGW-GVMVSHR 414 (472)
Q Consensus 390 GGitea~~ia~~A~a~g~-~~~v~~~ 414 (472)
+++.+++.++++..+.|- ++++-|+
T Consensus 219 ~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 219 ATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 999999999999888775 5666664
No 100
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.05 E-value=17 Score=36.30 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=37.1
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccH
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTV 392 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGi 392 (472)
.++..+++++.+++||++.-- +++++++.+++..+ +|.+++=-.-.-+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GG-I~~~~da~~~l~aG-Ad~V~igr~ll~~P 270 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGG-ISSAEDAIEFIMAG-ASAVQVGTANFYDP 270 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHcC-CCceeEcHHHhcCc
Confidence 566778888888999987774 67899999999888 69888754433333
No 101
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=77.87 E-value=56 Score=31.44 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=83.4
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCC---------CcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPF---------DQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~---------~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
..++.++.++++ +.+.+.++.+||=-. ..++++..+++++.. ++++.+-= .+...+++.+.+.+ ++
T Consensus 14 ~~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~--~~~~~~i~~a~~~g-~~ 89 (265)
T cd03174 14 ATFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV--RNREKGIERALEAG-VD 89 (265)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc--cCchhhHHHHHhCC-cC
Confidence 346888888874 557778877777433 356778888888877 46664321 12267777777766 77
Q ss_pred EEEeccCCc-------------ccHHHHHHHHHHHHHcCCcEEecCC-CCC--Chh---hHHHHHHHhhcCCCcccCCC
Q 012041 381 GLLLKVNQI-------------GTVTESIQAALDSKSAGWGVMVSHR-SGE--TED---NFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 381 ~i~ik~~k~-------------GGitea~~ia~~A~a~g~~~~v~~~-~~E--t~~---s~~a~lAva~~~~~i~~g~~ 440 (472)
.+.+-..-. +-+..+++.++.|+++|+.+.+.-. ... ... ...+..+...++..+.+.+.
T Consensus 90 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 90 EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 777766443 2478888999999999999866542 111 222 33566677778878765444
No 102
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=77.84 E-value=59 Score=33.68 Aligned_cols=126 Identities=11% Similarity=0.163 Sum_probs=80.2
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..++.++-+++ .+.|++.++..||=-++ ++|++..+.+.+.. ...+++-- .....++..+++.+ ++.+.+-+
T Consensus 21 ~~~s~e~k~~i-a~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~di~~a~~~g-~~~i~i~~ 96 (378)
T PRK11858 21 VVFTNEEKLAI-ARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALN--RAVKSDIDASIDCG-VDAVHIFI 96 (378)
T ss_pred CCCCHHHHHHH-HHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEc--ccCHHHHHHHHhCC-cCEEEEEE
Confidence 35788998877 56689999999996333 45567777776532 24444332 22468888888765 67776644
Q ss_pred CCc-------------ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHH---HHHhhcCCCcccCCC
Q 012041 387 NQI-------------GTVTESIQAALDSKSAGWGVMVSHRS-GETEDNFIAD---LSVGLASGQIKTGAP 440 (472)
Q Consensus 387 ~k~-------------GGitea~~ia~~A~a~g~~~~v~~~~-~Et~~s~~a~---lAva~~~~~i~~g~~ 440 (472)
.-. .-+..+.+.+++|++.|+.+.++... ..+...+... .+...++..+.+.+.
T Consensus 97 ~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT 167 (378)
T PRK11858 97 ATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT 167 (378)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc
Confidence 321 22455667899999999998877532 2334444444 445556777664444
No 103
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=77.07 E-value=9.1 Score=37.83 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHHHHhhc--CCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 343 ~~~~~~L~~~~--~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
++..+++++.+ ++||++.-- +++++++.+++..+ +|.+++
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GG-I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGG-IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECC-CCCHHHHHHHHHcC-ccHheE
Confidence 45567777777 688876653 56788999988877 787765
No 104
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.97 E-value=21 Score=34.86 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=67.6
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
+++-. +.++.+.+..+++++.++=+|++.++.+-..+ ..+ +.|.+.+. ++ .++.+.+.. .--.|++|-++.
T Consensus 61 ~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~--~n-~~LL~~va~-tgkPVilk~G~~ 132 (250)
T PRK13397 61 QGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD---YLDVIQVGARNM--QN-FEFLKTLSH-IDKPILFKRGLM 132 (250)
T ss_pred CCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh---cCCEEEECcccc--cC-HHHHHHHHc-cCCeEEEeCCCC
Confidence 34444 46667788889999999999998887777665 355 56666663 45 444444332 345788888888
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecCC
Q 012041 390 GTVTESIQAALDSKSAGW-GVMVSHR 414 (472)
Q Consensus 390 GGitea~~ia~~A~a~g~-~~~v~~~ 414 (472)
.++.++..+++...+.|- ++++-|+
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~eR 158 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCER 158 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcc
Confidence 888888888888887776 5666663
No 105
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.71 E-value=18 Score=38.79 Aligned_cols=91 Identities=8% Similarity=0.132 Sum_probs=61.9
Q ss_pred HHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-------------cccHHHHHHHHHHHHHcCCcE
Q 012041 344 SSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ-------------IGTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 344 ~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k-------------~GGitea~~ia~~A~a~g~~~ 409 (472)
+..++++++.+ ++|++++. .+.+..+.+++.+ +|+|.+-++- ..-+|...++++.|+.+|+++
T Consensus 257 ~~i~~ik~~~p~~~v~agnv--~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 257 EALRAVRALDPGVPIVAGNV--VTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred HHHHHHHHHCCCCeEEeecc--CCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 55678888875 99999884 4689999999886 8887733321 135778888888888999998
Q ss_pred EecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 410 MVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 410 ~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+.-.....++ -+.-|+++++..+..|.+
T Consensus 334 ia~ggi~~~~---~~~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 334 WADGGVRHPR---DVALALAAGASNVMIGSW 361 (479)
T ss_pred EecCCCCCHH---HHHHHHHcCCCeeeccHh
Confidence 7644332222 223344456666666655
No 106
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=76.37 E-value=23 Score=36.56 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=58.2
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
+++.. +.+..+.+.++++++.|+=+|++.++.+-..++ .+ +.|.+.+ +++. ++.+.+.. .--.|++|-+..
T Consensus 164 ~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~---vd~lkI~s~~--~~n~-~LL~~~a~-~gkPVilk~G~~ 235 (360)
T PRK12595 164 QGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDY---VDVIQIGARN--MQNF-ELLKAAGR-VNKPVLLKRGLS 235 (360)
T ss_pred cCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh---CCeEEECccc--ccCH-HHHHHHHc-cCCcEEEeCCCC
Confidence 34455 444566888899999999999998888777665 44 4555554 2342 33333221 233566666666
Q ss_pred ccHHHHHHHHHHHHHcCC-cEEecC
Q 012041 390 GTVTESIQAALDSKSAGW-GVMVSH 413 (472)
Q Consensus 390 GGitea~~ia~~A~a~g~-~~~v~~ 413 (472)
.++.++..+++...+.|- ++++-|
T Consensus 236 ~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 236 ATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 666666666666666554 344444
No 107
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.77 E-value=20 Score=38.07 Aligned_cols=92 Identities=11% Similarity=0.166 Sum_probs=61.9
Q ss_pred HHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-----------c--ccHHHHHHHHHHHHHcCCc
Q 012041 343 WSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ-----------I--GTVTESIQAALDSKSAGWG 408 (472)
Q Consensus 343 ~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k-----------~--GGitea~~ia~~A~a~g~~ 408 (472)
++..++++++. ++||+++.. .++++++.+++.+ +|+|.+-++- + ..++...++++.|+..+++
T Consensus 253 ~~~i~~i~~~~~~~~vi~G~v--~t~~~a~~l~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp 329 (450)
T TIGR01302 253 IDSIKEIKKTYPDLDIIAGNV--ATAEQAKALIDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP 329 (450)
T ss_pred HHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe
Confidence 35567788885 599988873 4789999999876 6887654321 1 2346667888889999999
Q ss_pred EEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 409 VMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 409 ~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++...... .+.-+--|+++++..+..|.+
T Consensus 330 viadGGi~---~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 330 VIADGGIR---YSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred EEEeCCCC---CHHHHHHHHHcCCCEEEECch
Confidence 87633221 122233456667888887776
No 108
>PLN02979 glycolate oxidase
Probab=75.42 E-value=25 Score=36.28 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc------HHHHHHHHHHHHHcC--CcEEe
Q 012041 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT------VTESIQAALDSKSAG--WGVMV 411 (472)
Q Consensus 340 ~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG------itea~~ia~~A~a~g--~~~~v 411 (472)
.-+|+..++|++..++||+..+. .+.++++++++.+ +|.|.+.- .|| ++.+.-+.+++++.+ +++++
T Consensus 209 ~ltW~dl~wlr~~~~~PvivKgV--~~~~dA~~a~~~G-vd~I~Vsn--hGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~ 283 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAG-AAGIIVSN--HGARQLDYVPATISALEEVVKATQGRIPVFL 283 (366)
T ss_pred CCCHHHHHHHHhccCCCEEeecC--CCHHHHHHHHhcC-CCEEEECC--CCcCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 34788899999999999999995 4689999998886 77776543 233 233333444445433 77766
Q ss_pred cCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 412 SHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 412 ~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
.+. ..++.. +-=|+++++..+..|.+
T Consensus 284 dGG-Ir~G~D--i~KALALGAdaV~iGrp 309 (366)
T PLN02979 284 DGG-VRRGTD--VFKALALGASGIFIGRP 309 (366)
T ss_pred eCC-cCcHHH--HHHHHHcCCCEEEEcHH
Confidence 552 222222 22256667777766654
No 109
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=74.49 E-value=46 Score=30.72 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeC--CCC-cCCHHHHHHHHhhc-CCeEEeCCccccCH--HHHHHHHHcCCCCEEEeccC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIED--PFD-QDDWSSWASLQSSV-DIQLVGDDLLVTNP--KRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEd--P~~-~~D~~~~~~L~~~~-~~pI~~dE~~~~~~--~~~~~~i~~~a~d~i~ik~~ 387 (472)
+.+++.+. .+.+.+. +.|+|= |+- ..-++..+.+++.. ++|+.++-- +.++ ..++.+.+.+ +|++.+...
T Consensus 11 ~~~~~~~~-~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~-v~~~~~~~~~~~~~aG-ad~i~~h~~ 86 (202)
T cd04726 11 DLEEALEL-AKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLK-TADAGALEAEMAFKAG-ADIVTVLGA 86 (202)
T ss_pred CHHHHHHH-HHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEE-eccccHHHHHHHHhcC-CCEEEEEee
Confidence 56788776 4556667 999998 542 23367788888874 688887732 2333 2345555554 777776543
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEec-CCCCCChhhHHHHHHHhhcCCCccc
Q 012041 388 QIGTVTESIQAALDSKSAGWGVMVS-HRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 388 k~GGitea~~ia~~A~a~g~~~~v~-~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
- +.....++.+.++.+|+.+++- +.+ .|...... +...++.++++
T Consensus 87 ~--~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~~e~~~--~~~~~~d~v~~ 132 (202)
T cd04726 87 A--PLSTIKKAVKAAKKYGKEVQVDLIGV-EDPEKRAK--LLKLGVDIVIL 132 (202)
T ss_pred C--CHHHHHHHHHHHHHcCCeEEEEEeCC-CCHHHHHH--HHHCCCCEEEE
Confidence 2 2234567888899999998753 322 33333222 55557777765
No 110
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=74.46 E-value=22 Score=38.79 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhhCC--eeEEeCCCCcCCHHHHHHHHhhc-----CCeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 314 SAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSV-----DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~--l~~iEdP~~~~D~~~~~~L~~~~-----~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
+.+..++-+.+ |.+.+ |.-+==|= .++-+.++.+++++ .+|+++|=- .++.-....++. +|-+.|.|
T Consensus 39 D~~atv~Qi~~-l~~aGceiVRvtv~~-~~~a~~l~~I~~~l~~~G~~iPLVADIH--F~~~~A~~a~~~--v~kiRINP 112 (611)
T PRK02048 39 DTEACVAQAKR-IIDAGGEYVRLTTQG-VREAENLMNINIGLRSQGYMVPLVADVH--FNPKVADVAAQY--AEKVRINP 112 (611)
T ss_pred cHHHHHHHHHH-HHHcCCCEEEEcCCC-HHHHHhHHHHHHHHhhcCCCCCEEEecC--CCcHHHHHHHHh--hCCEEECC
Confidence 34444444444 45555 44443332 35778899999986 699999964 355555555554 99999999
Q ss_pred CCcccH----------------------HHHHHHHHHHHHcCCcEEecCCCC
Q 012041 387 NQIGTV----------------------TESIQAALDSKSAGWGVMVSHRSG 416 (472)
Q Consensus 387 ~k~GGi----------------------tea~~ia~~A~a~g~~~~v~~~~~ 416 (472)
+..|.- -....+++.|+++|+++-+|.+.|
T Consensus 113 GN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~G 164 (611)
T PRK02048 113 GNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHG 164 (611)
T ss_pred CcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCc
Confidence 999883 567789999999999998888665
No 111
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=73.82 E-value=28 Score=37.33 Aligned_cols=92 Identities=10% Similarity=0.149 Sum_probs=62.4
Q ss_pred HHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC-------------CcccHHHHHHHHHHHHHcCCc
Q 012041 343 WSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN-------------QIGTVTESIQAALDSKSAGWG 408 (472)
Q Consensus 343 ~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~-------------k~GGitea~~ia~~A~a~g~~ 408 (472)
.+..+++++.. ++||++|.. .+.+.++.+++.+ +|+|.+-.+ -...++..+++++.|+.+|++
T Consensus 254 ~~~i~~i~~~~~~~~vi~g~~--~t~~~~~~l~~~G-~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~ 330 (475)
T TIGR01303 254 ISAIKAVRALDLGVPIVAGNV--VSAEGVRDLLEAG-ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGH 330 (475)
T ss_pred HHHHHHHHHHCCCCeEEEecc--CCHHHHHHHHHhC-CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCc
Confidence 35567777776 499999873 4689999999876 587763331 124577888888889999999
Q ss_pred EEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 409 VMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 409 ~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++.......+ .-+--|+++++..+..|.+
T Consensus 331 viadGgi~~~---~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 331 VWADGGVRHP---RDVALALAAGASNVMVGSW 359 (475)
T ss_pred EEEeCCCCCH---HHHHHHHHcCCCEEeechh
Confidence 8654432222 2233455667777777776
No 112
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=73.50 E-value=27 Score=33.00 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHHHHhhCC--eeEEeC---CCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 313 LSAQSLGDLYKEFVRDFP--IVSIED---PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~--l~~iEd---P~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.+++++..+ +...+.++ +.++|+ ...+-+.+-.+++++.+++|++.+-- ++++++++++++.+ +|.+.+
T Consensus 131 ~~~e~~~~~-a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGG-Irs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAY-CLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGG-IRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCC-CCCHHHHHHHHHcC-CCEEEe
Confidence 467777655 66666665 778899 55556789999999999988855543 57899999998877 787754
No 113
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=73.39 E-value=35 Score=32.88 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCeeEE--eCCC--CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 317 SLGDLYKEFVRDFPIVSI--EDPF--DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 317 eai~~~~~~l~~~~l~~i--EdP~--~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
+.+++ .+.+++.++.+| ..-. ..-|++..++++ .++||++.-. +++++++.++++.+ +|.|++-
T Consensus 153 ~~~~l-a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnGg-I~s~eda~~~l~~G-aD~VmiG 220 (233)
T cd02911 153 DDEEL-ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNS-VTTIESAKEMFSYG-ADMVSVA 220 (233)
T ss_pred CHHHH-HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEECC-cCCHHHHHHHHHcC-CCEEEEc
Confidence 34434 455667664443 2211 133666666665 6799988764 67899999999976 9999873
No 114
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=73.09 E-value=23 Score=34.66 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=75.6
Q ss_pred HHHhhCC---eeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHH
Q 012041 324 EFVRDFP---IVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAA 399 (472)
Q Consensus 324 ~~l~~~~---l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia 399 (472)
+..++.+ |..+ |.-+-..+++.++.+++.+.+||...+ +.+.+.++....+.| +|++.+...-.. .....++.
T Consensus 77 ~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kd-fi~~~~qi~~a~~~G-AD~VlLi~~~l~-~~~l~~li 153 (260)
T PRK00278 77 KAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKD-FIIDPYQIYEARAAG-ADAILLIVAALD-DEQLKELL 153 (260)
T ss_pred HHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeee-ecCCHHHHHHHHHcC-CCEEEEEeccCC-HHHHHHHH
Confidence 3344544 4433 544566889999999999999999888 577888888777665 799988877653 46888899
Q ss_pred HHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 400 LDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 400 ~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
+.|+..|+.+++-....+ =+.-|..+++.++-.+
T Consensus 154 ~~a~~lGl~~lvevh~~~-----E~~~A~~~gadiIgin 187 (260)
T PRK00278 154 DYAHSLGLDVLVEVHDEE-----ELERALKLGAPLIGIN 187 (260)
T ss_pred HHHHHcCCeEEEEeCCHH-----HHHHHHHcCCCEEEEC
Confidence 999999999876543221 1233455566666544
No 115
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=72.96 E-value=29 Score=38.64 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhCC--eeEEeCCCCcCCHHHHHHHHhh-----cCCeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 314 SAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSS-----VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~--l~~iEdP~~~~D~~~~~~L~~~-----~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
+.+..++-+.+ |++.+ |.-+==|= .++-+.++.++++ +.+|+++|=- .++.-+...++. +|-|.|.+
T Consensus 108 D~eatv~Qi~~-l~~aGceiVRvtv~~-~~~A~al~~I~~~L~~~g~~iPLVADIH--F~~~~Al~a~~~--vdkiRINP 181 (733)
T PLN02925 108 DVEATVDQVMR-IADKGADIVRITVQG-KKEADACFEIKNTLVQKGYNIPLVADIH--FAPSVALRVAEC--FDKIRVNP 181 (733)
T ss_pred cHHHHHHHHHH-HHHcCCCEEEEcCCC-HHHHHhHHHHHHHHhhcCCCCCEEEecC--CCHHHHHHHHHh--cCCeEECC
Confidence 44455555444 55555 44443332 3567888888886 6699999964 466666666654 99999999
Q ss_pred CCcccH----------------------HHHHHHHHHHHHcCCcEEecCCCCC
Q 012041 387 NQIGTV----------------------TESIQAALDSKSAGWGVMVSHRSGE 417 (472)
Q Consensus 387 ~k~GGi----------------------tea~~ia~~A~a~g~~~~v~~~~~E 417 (472)
+..|.- .....+++.|+++|+.+-+|-+.|.
T Consensus 182 GN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GS 234 (733)
T PLN02925 182 GNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGS 234 (733)
T ss_pred cccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcC
Confidence 999976 3455699999999999988887653
No 116
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=72.67 E-value=35 Score=31.56 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcC-CHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQD-DWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~-D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
+.+++.++ .+.+.+.++.+||=.+... ..+..+++++..+ +.|-++. +.+.+++..+++.++ |++.. ++
T Consensus 14 ~~~~~~~~-~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~--v~~~~~~~~a~~~Ga-~~i~~-----p~ 84 (190)
T cd00452 14 DAEDALAL-AEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGT--VLTPEQADAAIAAGA-QFIVS-----PG 84 (190)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCC-CEEEc-----CC
Confidence 57777777 4456678999999887643 4567888888886 7777776 345789988888764 65542 22
Q ss_pred HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 392 VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
.. ..+.+.++..|++++++.++ . +- +.-|...++.++++
T Consensus 85 ~~--~~~~~~~~~~~~~~i~gv~t---~-~e-~~~A~~~Gad~i~~ 123 (190)
T cd00452 85 LD--PEVVKAANRAGIPLLPGVAT---P-TE-IMQALELGADIVKL 123 (190)
T ss_pred CC--HHHHHHHHHcCCcEECCcCC---H-HH-HHHHHHCCCCEEEE
Confidence 22 36778888899998877742 1 11 34445567888876
No 117
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=72.53 E-value=14 Score=37.79 Aligned_cols=40 Identities=13% Similarity=0.304 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 344 ~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
..-+.+++.+++||++--. .++++...++++.+.+|.|-+
T Consensus 281 ~~a~~ik~~~~~pvi~~G~-i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 281 DLAEAIKKAVKIPVIGVGG-IRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHSSEEEEESS-TTHHHHHHHHHHTTSTSEEEE
T ss_pred hhhhhhhhhcCceEEEEee-ecchhhhHHHHhcCCceEeec
Confidence 4456778888899877765 567788999999999999875
No 118
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=72.37 E-value=56 Score=33.20 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhhCCeeEEe--------CC--------CCcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIE--------DP--------FDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQK 376 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iE--------dP--------~~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~ 376 (472)
+.++++++ .+.+++.++.+|. |- +++-|++..+++++.+ ++||++.-- +++++++.++++.
T Consensus 149 t~~~~~~~-~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGg-I~s~eda~~~l~~ 226 (333)
T PRK11815 149 SYEFLCDF-VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGG-IKTLEEAKEHLQH 226 (333)
T ss_pred CHHHHHHH-HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECC-cCCHHHHHHHHhc
Confidence 34556666 4557777766553 11 1335788889999886 788877553 5789999999873
Q ss_pred CCCCEEEeccCCcccHH
Q 012041 377 KSCNGLLLKVNQIGTVT 393 (472)
Q Consensus 377 ~a~d~i~ik~~k~GGit 393 (472)
+|.|++==.-.+...
T Consensus 227 --aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 227 --VDGVMIGRAAYHNPY 241 (333)
T ss_pred --CCEEEEcHHHHhCCH
Confidence 999887444333333
No 119
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.31 E-value=19 Score=35.87 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 344 ~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
+...++++.+++||++.-- +++++++.++++.+ +|.+++-
T Consensus 224 ~~v~~i~~~~~ipvi~~GG-I~s~~da~~~l~~G-Ad~V~ig 263 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGG-ITSFEDALEFLMAG-ASAVQVG 263 (300)
T ss_pred HHHHHHHhcCCCCEEEECC-CCCHHHHHHHHHcC-CCceeec
Confidence 5566777888899887654 67899999999877 8988864
No 120
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.67 E-value=1.1e+02 Score=30.13 Aligned_cols=128 Identities=9% Similarity=0.038 Sum_probs=82.6
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcC------------CHHHHHHHHhhc--CCeE--EeCCccccCHHHHHHHH
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD------------DWSSWASLQSSV--DIQL--VGDDLLVTNPKRIAEAI 374 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~------------D~~~~~~L~~~~--~~pI--~~dE~~~~~~~~~~~~i 374 (472)
-.++.++.++. .+.|++.++.+||=-++.. |.+.++++.+.. +.++ +..-. ....+++....
T Consensus 15 ~~f~~~~~~~i-a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAI-YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG-NDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHH-HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC-CCCHHHHHHHh
Confidence 45788888877 6679999999999876532 267788887654 3444 33321 12346666654
Q ss_pred HcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 375 QKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRS-GETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 375 ~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~-~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+. .+|.+.+-... --+.++++++++|+++|+.+.++-+. ....... .+..+...++..+.+.+..+
T Consensus 93 ~~-gv~~iri~~~~-~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G 162 (266)
T cd07944 93 GS-VVDMIRVAFHK-HEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG 162 (266)
T ss_pred cC-CcCEEEEeccc-ccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 44 47887776544 36899999999999999988665321 1233333 34444556777776555533
No 121
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=71.44 E-value=34 Score=35.54 Aligned_cols=92 Identities=15% Similarity=0.284 Sum_probs=59.1
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc------cHHHHHHHHHHHHHc--CCcEEec
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG------TVTESIQAALDSKSA--GWGVMVS 412 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G------Gitea~~ia~~A~a~--g~~~~v~ 412 (472)
-+|+..++|++.+++||+..+. .+.+|++.+++.+ +|+|.+. ..| ++..+.-+.+++++. .+++++.
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV--~~~~dA~~a~~~G-~d~I~vs--nhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGI--LHPDDARRAVEAG-VDGVVVS--NHGGRQVDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecC--CCHHHHHHHHHCC-CCEEEEc--CCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 4789999999999999999984 5789999998876 7887765 232 333444444554544 3787665
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 413 HRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 413 ~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+. .-++...+- |+++++..+.+|-+
T Consensus 315 GG-Ir~G~Dv~K--ALaLGA~~v~iGr~ 339 (383)
T cd03332 315 SG-VRTGADIMK--ALALGAKAVLIGRP 339 (383)
T ss_pred CC-cCcHHHHHH--HHHcCCCEEEEcHH
Confidence 52 222222222 45556666665544
No 122
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.40 E-value=37 Score=32.51 Aligned_cols=107 Identities=13% Similarity=-0.074 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCc-CCHHHHHHHHhhc----C-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQ-DDWSSWASLQSSV----D-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~-~D~~~~~~L~~~~----~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
+.+++++. .+.+-+.++..||=++.- .-++.+++|++.. + +.|-++- +.++++++..++.++-=++.+-..
T Consensus 25 ~~~~a~~~-~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGT--Vl~~e~a~~a~~aGA~FiVsP~~~ 101 (222)
T PRK07114 25 DVEVAKKV-IKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGS--IVDAATAALYIQLGANFIVTPLFN 101 (222)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEe--CcCHHHHHHHHHcCCCEEECCCCC
Confidence 57888877 566778899999999964 5567788887443 3 5555554 568999999999886544444332
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcc
Q 012041 388 QIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIK 436 (472)
Q Consensus 388 k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~ 436 (472)
.++++.|+.+|+.++-|.++ -|+ +.-|...++..+|
T Consensus 102 --------~~v~~~~~~~~i~~iPG~~T-psE----i~~A~~~Ga~~vK 137 (222)
T PRK07114 102 --------PDIAKVCNRRKVPYSPGCGS-LSE----IGYAEELGCEIVK 137 (222)
T ss_pred --------HHHHHHHHHcCCCEeCCCCC-HHH----HHHHHHCCCCEEE
Confidence 26888999999998655532 222 2334455666776
No 123
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=71.08 E-value=69 Score=33.58 Aligned_cols=94 Identities=7% Similarity=0.057 Sum_probs=63.9
Q ss_pred CCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC---------cc----cHHHHHHHHHHHHHcC
Q 012041 341 DDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ---------IG----TVTESIQAALDSKSAG 406 (472)
Q Consensus 341 ~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k---------~G----Gitea~~ia~~A~a~g 406 (472)
.-.+..++++++.+ ++|++.+. .++++.+.+++.+ +|+|.+-.+- .| .++....++++++..+
T Consensus 180 ~~~~~v~~ik~~~p~~~vi~g~V--~T~e~a~~l~~aG-aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~ 256 (404)
T PRK06843 180 RIIELVKKIKTKYPNLDLIAGNI--VTKEAALDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTN 256 (404)
T ss_pred hHHHHHHHHHhhCCCCcEEEEec--CCHHHHHHHHHcC-CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcC
Confidence 33466788998885 88878773 4689999999876 8887654311 12 4667778888888889
Q ss_pred CcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 407 WGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 407 ~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++++....... +.-+--|+++++..+..|.+
T Consensus 257 vpVIAdGGI~~---~~Di~KALalGA~aVmvGs~ 287 (404)
T PRK06843 257 ICIIADGGIRF---SGDVVKAIAAGADSVMIGNL 287 (404)
T ss_pred CeEEEeCCCCC---HHHHHHHHHcCCCEEEEcce
Confidence 99865443222 22233456677888888777
No 124
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=70.75 E-value=37 Score=35.12 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
.|+..+.++.+..++||+++. +.+.++++++++. -+|+|. .++.|
T Consensus 175 ~~p~~l~~~i~~~~IPVI~G~--V~t~e~A~~~~~a-GaDgV~--~G~gg 219 (369)
T TIGR01304 175 GEPLNLKEFIGELDVPVIAGG--VNDYTTALHLMRT-GAAGVI--VGPGG 219 (369)
T ss_pred CCHHHHHHHHHHCCCCEEEeC--CCCHHHHHHHHHc-CCCEEE--ECCCC
Confidence 478889999999999999865 4578999999985 488887 44443
No 125
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=70.19 E-value=73 Score=34.49 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=72.5
Q ss_pred HHHHHHHHhh-CCeeEEeCCCCcCC---HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEecc-------
Q 012041 319 GDLYKEFVRD-FPIVSIEDPFDQDD---WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV------- 386 (472)
Q Consensus 319 i~~~~~~l~~-~~l~~iEdP~~~~D---~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~------- 386 (472)
.++...+++. .++..+--+ +-+. ++..++|++..+ ++|++++. .++++.+.+++.+ +|+|.+-+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~~~p~~~vi~g~v--~t~e~a~~a~~aG-aD~i~vg~g~G~~~~ 325 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKKTYPELDVIGGNV--VTMYQAQNLIQAG-VDGLRVGMGSGSICT 325 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHHHHHcC-cCEEEECCCCCcccc
Confidence 3443444443 456555433 3222 367888998885 99988773 4789999998865 78886632
Q ss_pred CCc------ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 387 NQI------GTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 387 ~k~------GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++. .-++....+.+++++.+++++....... +.-+--|+++++..+..|..
T Consensus 326 t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~---~~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 326 TQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISN---SGHIVKALTLGASTVMMGSF 382 (505)
T ss_pred CccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCC---HHHHHHHHHcCCCEEEEchh
Confidence 111 1346777788889999999876543222 22234455667778777766
No 126
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=69.89 E-value=32 Score=35.54 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=57.6
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc------HHHHHHHHHHHHHcC--CcEEec
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT------VTESIQAALDSKSAG--WGVMVS 412 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG------itea~~ia~~A~a~g--~~~~v~ 412 (472)
-+|+.+++||+..++||+..+. .++++++++++.+ +|.|.+.= .|| ++...-+.+++++.+ +++++.
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV--~~~~dA~~a~~~G-vd~I~Vsn--hGGrqld~~~~t~~~L~ei~~av~~~~~vi~d 285 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAG-AAGIIVSN--HGARQLDYVPATISALEEVVKATQGRIPVFLD 285 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecC--CCHHHHHHHHHcC-CCEEEECC--CCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 4788899999999999999995 4689999998886 67765532 232 233333333444433 777665
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 413 HRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 413 ~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+. ..++...+- |+++++..+.+|.+
T Consensus 286 GG-Ir~G~Dv~K--ALALGA~aV~iGr~ 310 (367)
T PLN02493 286 GG-VRRGTDVFK--ALALGASGIFIGRP 310 (367)
T ss_pred CC-cCcHHHHHH--HHHcCCCEEEEcHH
Confidence 52 222222222 45556777665544
No 127
>PLN02535 glycolate oxidase
Probab=69.77 E-value=29 Score=35.88 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=57.9
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC---C-cccHHHHHHHHHHHHHc--CCcEEecCC
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN---Q-IGTVTESIQAALDSKSA--GWGVMVSHR 414 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~---k-~GGitea~~ia~~A~a~--g~~~~v~~~ 414 (472)
-+|+..++|++..++||+..+. .++++++.+++.+ +|+|.+.=. + -+++....-+.++.++. .++++..+.
T Consensus 210 ~tW~~i~~lr~~~~~PvivKgV--~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGG 286 (364)
T PLN02535 210 LSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGG 286 (364)
T ss_pred CCHHHHHHHHhccCCCEEEecC--CCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCC
Confidence 4788899999999999999995 4789998888765 787755310 0 12343444444554443 588765442
Q ss_pred CCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 415 SGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 415 ~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
..++.... =|+++|+..+.+|.+
T Consensus 287 -Ir~g~Dv~--KALalGA~aV~vGr~ 309 (364)
T PLN02535 287 -VRRGTDVF--KALALGAQAVLVGRP 309 (364)
T ss_pred -CCCHHHHH--HHHHcCCCEEEECHH
Confidence 23332222 255556766666554
No 128
>PLN02321 2-isopropylmalate synthase
Probab=69.15 E-value=91 Score=34.71 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=78.6
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--C-CCcCCHHHHHHHHhhcC--------CeEEeCCccccCHHHHHHHHHcC-C
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--P-FDQDDWSSWASLQSSVD--------IQLVGDDLLVTNPKRIAEAIQKK-S 378 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P-~~~~D~~~~~~L~~~~~--------~pI~~dE~~~~~~~~~~~~i~~~-a 378 (472)
..++.+|-+++ .+.|+++++..||= | ..+.|++..+++.+... ++.+..= ...+..++...++.. .
T Consensus 103 ~~~s~eeKl~I-a~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~-~ra~~~dId~A~~al~~ 180 (632)
T PLN02321 103 ATLTSKEKLDI-ARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGL-SRCNKKDIDAAWEAVKH 180 (632)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeee-hhccHHhHHHHHHHhcC
Confidence 35789999887 56689999999994 5 45789999999976642 1322211 123568888777642 1
Q ss_pred CC--EEEecc-------------CCcccHHHHHHHHHHHHHcCCc-EEecCC-CCCChhhH---HHHHHHhhcCCCcccC
Q 012041 379 CN--GLLLKV-------------NQIGTVTESIQAALDSKSAGWG-VMVSHR-SGETEDNF---IADLSVGLASGQIKTG 438 (472)
Q Consensus 379 ~d--~i~ik~-------------~k~GGitea~~ia~~A~a~g~~-~~v~~~-~~Et~~s~---~a~lAva~~~~~i~~g 438 (472)
++ .+.+-+ ++---+..+.+++++|+++|.. +.++.. .+.+...+ .+..+...++..+.+.
T Consensus 181 a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~ 260 (632)
T PLN02321 181 AKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIP 260 (632)
T ss_pred CCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 11 233222 1222344466788899999984 666552 22333333 4455555678887765
Q ss_pred CCCC
Q 012041 439 APCR 442 (472)
Q Consensus 439 ~~~~ 442 (472)
+-.+
T Consensus 261 DTvG 264 (632)
T PLN02321 261 DTVG 264 (632)
T ss_pred cccc
Confidence 5533
No 129
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.92 E-value=1e+02 Score=31.25 Aligned_cols=92 Identities=9% Similarity=0.134 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC-------C------cccHHHHHHHHHHHHHcCCc
Q 012041 343 WSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN-------Q------IGTVTESIQAALDSKSAGWG 408 (472)
Q Consensus 343 ~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~-------k------~GGitea~~ia~~A~a~g~~ 408 (472)
.+..++++++.+ ++|+++. +.++++++.+++.+ +|+|.+-.+ + ...++...++++.++..+++
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~--v~t~~~A~~l~~aG-aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vp 199 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGN--VVTAEAARDLIDAG-ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVP 199 (325)
T ss_pred HHHHHHHHHHCCCceEEECC--CCCHHHHHHHHhcC-CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCc
Confidence 456778888775 8998876 35788988888764 788776321 1 12345556777778888999
Q ss_pred EEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 409 VMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 409 ~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++..... - ...-+.-|+++++..+..|..
T Consensus 200 VIA~GGI-~--~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 200 VIADGGI-R--TSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred EEecCCC-C--CHHHHHHHHHcCCCEEEecch
Confidence 8643321 2 222233344566777666554
No 130
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=68.39 E-value=97 Score=30.68 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=78.5
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--C-CCcCCHHHHHHHHhhc-------CCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--P-FDQDDWSSWASLQSSV-------DIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P-~~~~D~~~~~~L~~~~-------~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
..++.++-++++..+++.+++..||= | +.++|++...++.+.. ++.+++ .+.+..++..+++.+ ++
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~A~~~g-~~ 89 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLG---FVDGDKSVDWIKSAG-AK 89 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEE---ecCcHHHHHHHHHCC-CC
Confidence 45788888887555568899999998 6 6777777777776532 222221 122346676666653 46
Q ss_pred EEEecc-------------CCcccHHHHHHHHHHHHHcCCcEEecCCC-C---CChhhH---HHHHHHhhcCCCcccCCC
Q 012041 381 GLLLKV-------------NQIGTVTESIQAALDSKSAGWGVMVSHRS-G---ETEDNF---IADLSVGLASGQIKTGAP 440 (472)
Q Consensus 381 ~i~ik~-------------~k~GGitea~~ia~~A~a~g~~~~v~~~~-~---Et~~s~---~a~lAva~~~~~i~~g~~ 440 (472)
.+.+-+ +.---+....+++++|+++|+.+.++-.. + .+.... .+..+...++..+.+.+.
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT 169 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDT 169 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 666544 22344566678899999999987654431 1 223333 344455667777765555
Q ss_pred CC
Q 012041 441 CR 442 (472)
Q Consensus 441 ~~ 442 (472)
.+
T Consensus 170 ~G 171 (280)
T cd07945 170 LG 171 (280)
T ss_pred CC
Confidence 33
No 131
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=68.16 E-value=37 Score=33.65 Aligned_cols=57 Identities=7% Similarity=0.027 Sum_probs=40.6
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHH
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAAL 400 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~ 400 (472)
.+...+++++.+++||++.-- +++++++.++++.+ +|.+++--.-..+..=..++.+
T Consensus 219 ~~~~i~~i~~~~~ipii~~GG-I~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGG-IASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECC-CCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHH
Confidence 456677888888899987664 67889999999988 6999976554444444444433
No 132
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.05 E-value=75 Score=29.86 Aligned_cols=88 Identities=17% Similarity=0.256 Sum_probs=59.2
Q ss_pred HHHHhhCCeeEE---eCC-CCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHH
Q 012041 323 KEFVRDFPIVSI---EDP-FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQA 398 (472)
Q Consensus 323 ~~~l~~~~l~~i---EdP-~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~i 398 (472)
++..++.+..|| =++ ....+++.++.+++..++||.... +..+++.+..+.+.| +|.+.+...-.. .....++
T Consensus 37 A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~-~i~~~~~v~~~~~~G-ad~v~l~~~~~~-~~~~~~~ 113 (217)
T cd00331 37 AKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKD-FIIDPYQIYEARAAG-ADAVLLIVAALD-DEQLKEL 113 (217)
T ss_pred HHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECC-eecCHHHHHHHHHcC-CCEEEEeeccCC-HHHHHHH
Confidence 334455553333 223 334678889999998899998776 466777788787776 677765444332 4677788
Q ss_pred HHHHHHcCCcEEecC
Q 012041 399 ALDSKSAGWGVMVSH 413 (472)
Q Consensus 399 a~~A~a~g~~~~v~~ 413 (472)
.+.+...|+.+++..
T Consensus 114 ~~~~~~~g~~~~v~v 128 (217)
T cd00331 114 YELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHcCCeEEEEE
Confidence 888888899876654
No 133
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=67.97 E-value=48 Score=34.33 Aligned_cols=93 Identities=12% Similarity=0.201 Sum_probs=56.8
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC---------cc-cH---HHHHHHHHHHHHc---
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ---------IG-TV---TESIQAALDSKSA--- 405 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k---------~G-Gi---tea~~ia~~A~a~--- 405 (472)
|+..+.++.++.++||+++. +.++++++++++ -.+|+|.+-..- .| |+ +...++++.++.+
T Consensus 175 ~~~~i~~~ik~~~ipVIaG~--V~t~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~ 251 (368)
T PRK08649 175 EPLNLKEFIYELDVPVIVGG--CVTYTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDE 251 (368)
T ss_pred CHHHHHHHHHHCCCCEEEeC--CCCHHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhh
Confidence 68888888888899999866 457899999997 458988664321 11 12 2233334333333
Q ss_pred ----CCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 406 ----GWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 406 ----g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+++++....... .-. +--|+++++..+.+|.+
T Consensus 252 ~~~~~vpVIAdGGI~~-~~d--iakAlalGAd~Vm~Gs~ 287 (368)
T PRK08649 252 TGGRYVHVIADGGIGT-SGD--IAKAIACGADAVMLGSP 287 (368)
T ss_pred hcCCCCeEEEeCCCCC-HHH--HHHHHHcCCCeecccch
Confidence 688765543222 222 23344557777777766
No 134
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.37 E-value=46 Score=31.67 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=84.1
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCC---CCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHH---cCCCCEEEec
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDP---FDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQ---KKSCNGLLLK 385 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP---~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~---~~a~d~i~ik 385 (472)
++.++.+++ .+.+.+.++..||=. ..+++++.++++++... ..+.+-- .....+++..++ .-.+|.+.+-
T Consensus 11 ~~~~~k~~i-~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 11 FSTEEKLEI-AKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALC--RANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp --HHHHHHH-HHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEE--ESCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCHHHHHHH-HHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceee--eehHHHHHHHHHhhHhccCCEEEec
Confidence 677888876 566899999999987 34567788888877654 4444332 234566666443 4457777665
Q ss_pred cCCc-------------ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhH---HHHHHHhhcCCCcccCCCCCchhHHH
Q 012041 386 VNQI-------------GTVTESIQAALDSKSAGWGVMVSHRS-GETEDNF---IADLSVGLASGQIKTGAPCRSERLAK 448 (472)
Q Consensus 386 ~~k~-------------GGitea~~ia~~A~a~g~~~~v~~~~-~Et~~s~---~a~lAva~~~~~i~~g~~~~~e~~~k 448 (472)
.... ..+..+.+++++|++.|..+.++... ..+.... .+..+..+++..+.+.+-.+.-.=..
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~ 167 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPED 167 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHH
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHH
Confidence 4332 23778889999999999998777632 2233333 45555555777776555444322233
Q ss_pred hhHHH
Q 012041 449 YNQLL 453 (472)
Q Consensus 449 ~n~ll 453 (472)
+.+++
T Consensus 168 v~~lv 172 (237)
T PF00682_consen 168 VAELV 172 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34433
No 135
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.25 E-value=36 Score=34.56 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc---HH-----------HHHHHHHHHHHcCCcEE
Q 012041 346 WASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT---VT-----------ESIQAALDSKSAGWGVM 410 (472)
Q Consensus 346 ~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG---it-----------ea~~ia~~A~a~g~~~~ 410 (472)
.++++++.+ +||+++|. .++++++.+++.+ +|++. ++-.|| +| ..--+.+++++..++++
T Consensus 131 I~~ir~~~p~~~vi~g~V--~t~e~a~~l~~aG-ad~i~--vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVI 205 (326)
T PRK05458 131 IQHIKKHLPETFVIAGNV--GTPEAVRELENAG-ADATK--VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPII 205 (326)
T ss_pred HHHHHhhCCCCeEEEEec--CCHHHHHHHHHcC-cCEEE--ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEE
Confidence 788888887 99999984 4789999998876 78754 332222 11 22224455566678875
Q ss_pred ecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 411 VSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 411 v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
.... ..+... +-=|+++++..+..|.+
T Consensus 206 AdGG-I~~~~D--i~KaLa~GA~aV~vG~~ 232 (326)
T PRK05458 206 ADGG-IRTHGD--IAKSIRFGATMVMIGSL 232 (326)
T ss_pred EeCC-CCCHHH--HHHHHHhCCCEEEechh
Confidence 4442 222222 23345557777777666
No 136
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=66.13 E-value=63 Score=33.43 Aligned_cols=95 Identities=6% Similarity=0.055 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC----CcccHHHHHHHHHHHHHcC--CcEEecC
Q 012041 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN----QIGTVTESIQAALDSKSAG--WGVMVSH 413 (472)
Q Consensus 340 ~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~----k~GGitea~~ia~~A~a~g--~~~~v~~ 413 (472)
.-+|+.+++|++.+++||+.-+. .++++++.+++.+ +|.|.+-.. .-++.+.+.-+.+++++.+ +++++.+
T Consensus 214 ~~~w~~i~~l~~~~~~PvivKGv--~~~eda~~a~~~G-vd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dG 290 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVKGP--QCPEDADRALKAG-ASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDS 290 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCC--CCHHHHHHHHHcC-cCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeC
Confidence 45788899999999999999984 3589998888765 666654321 1123344445555666554 7876655
Q ss_pred CCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 414 RSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 414 ~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
. .-++.... =|+++++..+.+|-+
T Consensus 291 G-Ir~g~Dv~--KaLalGAd~V~igR~ 314 (367)
T TIGR02708 291 G-VRRGQHVF--KALASGADLVALGRP 314 (367)
T ss_pred C-cCCHHHHH--HHHHcCCCEEEEcHH
Confidence 2 22222222 345577888777665
No 137
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=65.50 E-value=41 Score=34.69 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=68.0
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc------HHHHHHHHHHHHHcCCcEEecCCC
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT------VTESIQAALDSKSAGWGVMVSHRS 415 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG------itea~~ia~~A~a~g~~~~v~~~~ 415 (472)
.|+..++|++..+.||+.-+. .++++.+++++.+ +|.|.+ +..|| .+....+.+++++.++++++...
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV--~~~eda~~a~~~G-~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGG- 297 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGI--VTAEDAKRCIELG-ADGVIL--SNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSG- 297 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecC--CCHHHHHHHHHCC-cCEEEE--CCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCC-
Confidence 578899999999999988884 5789999999876 777655 33333 22344555566667888776552
Q ss_pred CCChhhHHHHHHHhhcCCCcccCCC-------CCchhHHHhhHHHHHH
Q 012041 416 GETEDNFIADLSVGLASGQIKTGAP-------CRSERLAKYNQLLRIE 456 (472)
Q Consensus 416 ~Et~~s~~a~lAva~~~~~i~~g~~-------~~~e~~~k~n~ll~i~ 456 (472)
..++.. +-=|+++++..+.+|.+ .+.+.+.++=++|+-|
T Consensus 298 Ir~g~D--v~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 298 IRRGSD--IVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred CCCHHH--HHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222222 22355666777666554 3456666665555544
No 138
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=65.29 E-value=71 Score=32.33 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCeeEEe--------CCCC--------cCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcC
Q 012041 315 AQSLGDLYKEFVRDFPIVSIE--------DPFD--------QDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~l~~iE--------dP~~--------~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
.++++++ .+.+++.++.+|. |-+. +-||+..+++++.+ .+||++.-- +.+++|+.+.++
T Consensus 140 ~~~~~~~-~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGd-I~s~~da~~~l~-- 215 (318)
T TIGR00742 140 YEFLCDF-VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGG-IKNSEQIKQHLS-- 215 (318)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECC-cCCHHHHHHHHh--
Confidence 3556655 5567777776663 2221 22777778888888 699877654 678999999885
Q ss_pred CCCEEEecc
Q 012041 378 SCNGLLLKV 386 (472)
Q Consensus 378 a~d~i~ik~ 386 (472)
.||.++|-=
T Consensus 216 g~dgVMigR 224 (318)
T TIGR00742 216 HVDGVMVGR 224 (318)
T ss_pred CCCEEEECH
Confidence 488888643
No 139
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=65.08 E-value=1.7e+02 Score=29.87 Aligned_cols=128 Identities=10% Similarity=-0.011 Sum_probs=82.1
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--------------CCCcCCHHHHHHHHhhcC-CeEE--eCCccccCHHHHHHH
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--------------PFDQDDWSSWASLQSSVD-IQLV--GDDLLVTNPKRIAEA 373 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--------------P~~~~D~~~~~~L~~~~~-~pI~--~dE~~~~~~~~~~~~ 373 (472)
..++.++.+++ .+.+++.++..||= |....|++..+++.+..+ ..+. ..=. ..+.++++..
T Consensus 19 ~~f~~~~~~~i-a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg-~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRAI-AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG-IGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHHH-HHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC-ccCHHHHHHH
Confidence 45788888877 56689999999998 444567888888877664 3322 1110 1246888888
Q ss_pred HHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 374 IQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHR-SGETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 374 i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~-~~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
.+.+ +|.+.+-.. +.=.-.+.+.+++|++.|..+.+.-+ +....... .+......++..+.+-+..+
T Consensus 97 ~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 167 (333)
T TIGR03217 97 YDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAG 167 (333)
T ss_pred HHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 7764 788887543 33345678999999999988743322 11222333 44455666777776555433
No 140
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=64.50 E-value=79 Score=30.65 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeE-E------e
Q 012041 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS-I------E 335 (472)
Q Consensus 263 ~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~-i------E 335 (472)
..+.+++++++-| +.+.+.+|+.-...-. ..|.- ....++.+.+ . .++++++.- | |
T Consensus 110 ~p~~v~~~~~~~g--~rivv~lD~r~g~vav--~GW~e---------~s~~~~~~l~---~-~~~~~g~~~ii~TdI~~D 172 (241)
T COG0106 110 NPDLVKELCEEYG--DRIVVALDARDGKVAV--SGWQE---------DSGVELEELA---K-RLEEVGLAHILYTDISRD 172 (241)
T ss_pred CHHHHHHHHHHcC--CcEEEEEEccCCcccc--ccccc---------cccCCHHHHH---H-HHHhcCCCeEEEEecccc
Confidence 3456677777664 4799999995322211 12321 1234455443 3 345555321 1 2
Q ss_pred CCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc-CCCCEEEeccCCccc--HHHHHHHHH
Q 012041 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK-KSCNGLLLKVNQIGT--VTESIQAAL 400 (472)
Q Consensus 336 dP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~-~a~d~i~ik~~k~GG--itea~~ia~ 400 (472)
--+.--|++.+++|.+.+.+|+++--= +.+.+|++.+-+. +...++.=+---.|. +.++++.++
T Consensus 173 Gtl~G~n~~l~~~l~~~~~ipviaSGG-v~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 173 GTLSGPNVDLVKELAEAVDIPVIASGG-VSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred cccCCCCHHHHHHHHHHhCcCEEEecC-cCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 334445899999999999988744432 5688999999887 566665544333333 466655543
No 141
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=64.44 E-value=91 Score=31.93 Aligned_cols=67 Identities=12% Similarity=0.325 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCCeeEE-------eC--C-CCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEE
Q 012041 315 AQSLGDLYKEFVRDFPIVSI-------ED--P-FDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLL 383 (472)
Q Consensus 315 ~~eai~~~~~~l~~~~l~~i-------Ed--P-~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ 383 (472)
.++-+++ ++.+++.|..|| || + ..+-||+.++.|++.++ +|+++.-. +.+++|+.+.++.-.+|.|+
T Consensus 154 ~~kTvd~-ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGn-I~~~~d~~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 154 LEKTVDY-AKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGN-ILSLEDVERCLKYTGADGVM 231 (358)
T ss_pred HHHHHHH-HHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCC-cCcHHHHHHHHHHhCCceEE
Confidence 4556666 556788876665 22 2 55679999999999999 99998885 78899999999976778776
No 142
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=64.22 E-value=36 Score=35.00 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=59.4
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc------HHHHHHHHHHHHHcC--CcEEec
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT------VTESIQAALDSKSAG--WGVMVS 412 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG------itea~~ia~~A~a~g--~~~~v~ 412 (472)
.+|+..++|++.+++||+.-|. .+++|++++.+.+ +|+|. ++..|| ++.+.-+.++.++.+ +++++.
T Consensus 212 ~~w~~i~~~~~~~~~pvivKgv--~~~~da~~~~~~G-~~~i~--vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~d 286 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIVKGV--LSPEDAKRAVDAG-VDGID--VSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIAD 286 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEEEEE---SHHHHHHHHHTT--SEEE--EESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCHHHHHHHhcccCCceEEEec--ccHHHHHHHHhcC-CCEEE--ecCCCcccCccccccccccHHHHhhhcCCeeEEEe
Confidence 5778899999999999999995 5789999998876 56654 455555 666666666666554 888766
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 413 HRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 413 ~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+. ..++...+- |+++++..+-.|-+
T Consensus 287 gG-ir~g~Dv~k--alaLGA~~v~igr~ 311 (356)
T PF01070_consen 287 GG-IRRGLDVAK--ALALGADAVGIGRP 311 (356)
T ss_dssp SS---SHHHHHH--HHHTT-SEEEESHH
T ss_pred CC-CCCHHHHHH--HHHcCCCeEEEccH
Confidence 52 344433333 45556666665544
No 143
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=64.00 E-value=1.1e+02 Score=29.89 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=60.1
Q ss_pred ccCHHHHHHHHHHHHhh-CCeeEE--e------CCCCc-CCHHH----HHHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 312 VLSAQSLGDLYKEFVRD-FPIVSI--E------DPFDQ-DDWSS----WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~-~~l~~i--E------dP~~~-~D~~~----~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
..+.+++++...+++++ .++.=| | +|+.+ +.++- .+.|++.+++||+-|-. +++-++..++.+
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~---~~~v~e~al~~G 96 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTF---RAEVARAALEAG 96 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC---CHHHHHHHHHhC
Confidence 35778888886666654 233222 2 12222 12222 35556666799999963 578888899886
Q ss_pred CCCEEE-eccCCcccHHHHHHHHHHHHHcCCcEEecCCCC
Q 012041 378 SCNGLL-LKVNQIGTVTESIQAALDSKSAGWGVMVSHRSG 416 (472)
Q Consensus 378 a~d~i~-ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~ 416 (472)
+++|| +.-. ..=-+++.++..+|..+++-|+.+
T Consensus 97 -~~iINdisg~-----~~~~~~~~l~~~~~~~vV~m~~~g 130 (257)
T cd00739 97 -ADIINDVSGG-----SDDPAMLEVAAEYGAPLVLMHMRG 130 (257)
T ss_pred -CCEEEeCCCC-----CCChHHHHHHHHcCCCEEEECCCC
Confidence 88876 3322 111567888999999999888643
No 144
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=63.05 E-value=1.9e+02 Score=31.21 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=80.7
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcC---CCCEEE
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKK---SCNGLL 383 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~---a~d~i~ 383 (472)
..++.++-+++ .+.|+++++..||=-++ +.|++..+++.+... ..|++= ...+..++...++.. ..+.+.
T Consensus 18 ~~~s~e~K~~i-a~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al--~r~~~~did~a~~al~~~~~~~v~ 94 (494)
T TIGR00973 18 ASLTVEEKLQI-ALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGL--ARCVEKDIDAAAEALKPAEKFRIH 94 (494)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEE--cCCCHHhHHHHHHhccccCCCEEE
Confidence 35789998877 56789999999995443 567888888866554 344321 122468887776642 244444
Q ss_pred eccC-------------CcccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 384 LKVN-------------QIGTVTESIQAALDSKSAGWGVMVSHRSG-ETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 384 ik~~-------------k~GGitea~~ia~~A~a~g~~~~v~~~~~-Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+-.. +-.-+..+.+++++|+++|..+.++.... .+...+ .+..+...++..+.+.+..+
T Consensus 95 i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG 170 (494)
T TIGR00973 95 TFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVG 170 (494)
T ss_pred EEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 4322 12235556678999999999988777432 233333 34445555777777555533
No 145
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=62.75 E-value=43 Score=35.98 Aligned_cols=106 Identities=9% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCeeEEeCC--CCcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-----------c--ccH
Q 012041 329 FPIVSIEDP--FDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ-----------I--GTV 392 (472)
Q Consensus 329 ~~l~~iEdP--~~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k-----------~--GGi 392 (472)
.++..+..+ -...-++..++|+++. ++||+.+.. .+.++++.+++.+ +|+|.+-.+. + ..+
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v--~t~e~a~~l~~aG-ad~i~vg~g~gs~~~~r~~~~~g~p~~ 317 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNV--ATAEAARALIEAG-ADAVKVGIGPGSICTTRIVAGVGVPQI 317 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEecc--CCHHHHHHHHHcC-CCEEEECCCCCccccceeecCCCcCHH
Confidence 445555544 1123345678888888 689887773 4689999999886 5887642211 1 135
Q ss_pred HHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 393 TESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 393 tea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
+-..++++.|+..+++++..... -+ +.-+--|+++++..+..|.+
T Consensus 318 ~~~~~~~~~~~~~~~~viadGGi-~~--~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 318 TAIADAAEAAKKYGIPVIADGGI-RY--SGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred HHHHHHHHHhccCCCeEEEcCCC-CC--HHHHHHHHHhCCCEEEECcc
Confidence 56666777777788998653322 22 22234556678888888776
No 146
>PRK00915 2-isopropylmalate synthase; Validated
Probab=62.73 E-value=2.3e+02 Score=30.71 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=79.1
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCC---CcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHc---CCCCEEE
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPF---DQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQK---KSCNGLL 383 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~---~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~---~a~d~i~ 383 (472)
..++.++-+++ .+.|++.++..||=-+ .+.|++..+++.+... ..|++==. .+..++...++. -..+.+.
T Consensus 21 ~~~s~e~K~~i-a~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r--~~~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 21 ASLTVEEKLQI-AKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLAR--AVKKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEcc--CCHHHHHHHHHHhhcCCCCEEE
Confidence 35789998877 5678999999999844 4678888888876554 55543221 245777777632 2234444
Q ss_pred eccCC-------------cccHHHHHHHHHHHHHcCCcEEecCCCC-CChhhHH---HHHHHhhcCCCcccCCC
Q 012041 384 LKVNQ-------------IGTVTESIQAALDSKSAGWGVMVSHRSG-ETEDNFI---ADLSVGLASGQIKTGAP 440 (472)
Q Consensus 384 ik~~k-------------~GGitea~~ia~~A~a~g~~~~v~~~~~-Et~~s~~---a~lAva~~~~~i~~g~~ 440 (472)
+-..- -.-+..+.+.+++|+++|..+.++.... .+...+. +..+...++..+.+.+.
T Consensus 98 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DT 171 (513)
T PRK00915 98 TFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDT 171 (513)
T ss_pred EEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccC
Confidence 33321 1223445688899999999988777432 2334443 34445557777765554
No 147
>PRK09389 (R)-citramalate synthase; Provisional
Probab=62.60 E-value=2e+02 Score=31.03 Aligned_cols=127 Identities=11% Similarity=0.127 Sum_probs=80.9
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCC---CcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPF---DQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~---~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..++.++-+++ .+.|.+.++..||=-+ .++|++..+++.+.. ...|++-= .....|+..+++.+ ++.+.+-+
T Consensus 19 ~~~s~e~K~~i-a~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~--r~~~~di~~a~~~g-~~~v~i~~ 94 (488)
T PRK09389 19 VSLTPEEKLEI-ARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFA--RAVKVDIDAALECD-VDSVHLVV 94 (488)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeec--ccCHHHHHHHHhCC-cCEEEEEE
Confidence 45788998877 5668999999999844 457888888887543 35554432 23468888888765 56666544
Q ss_pred CCc-------------ccHHHHHHHHHHHHHcCCcEEecCCC-CCChhhHHHH---HHHhhcCCCcccCCCC
Q 012041 387 NQI-------------GTVTESIQAALDSKSAGWGVMVSHRS-GETEDNFIAD---LSVGLASGQIKTGAPC 441 (472)
Q Consensus 387 ~k~-------------GGitea~~ia~~A~a~g~~~~v~~~~-~Et~~s~~a~---lAva~~~~~i~~g~~~ 441 (472)
.-. --+..+.+.+++|+.+|+.+.++-.. ..+...+... .+...++..+.+.+-.
T Consensus 95 ~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTv 166 (488)
T PRK09389 95 PTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTV 166 (488)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 321 22455667788999999987665422 2233444433 3445567777655543
No 148
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=62.50 E-value=1.5e+02 Score=29.46 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=60.1
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC----CcccHHHHHHHHHHHHHc--CCcEEecCCC
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN----QIGTVTESIQAALDSKSA--GWGVMVSHRS 415 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~----k~GGitea~~ia~~A~a~--g~~~~v~~~~ 415 (472)
+++-.++|++++++||+.-+. .++++++.+.+.+ +|+|.+.-. .-+|+..+.-+.++++.. .++++... .
T Consensus 160 ~~~~i~~l~~~~~~pvivK~v--~s~~~a~~a~~~G-~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~G-G 235 (299)
T cd02809 160 TWDDLAWLRSQWKGPLILKGI--LTPEDALRAVDAG-ADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDG-G 235 (299)
T ss_pred CHHHHHHHHHhcCCCEEEeec--CCHHHHHHHHHCC-CCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeC-C
Confidence 467889999999999988873 4678888777665 787776421 114566666666776766 48875444 2
Q ss_pred CCChhhHHHHHHHhhcCCCcccCCC
Q 012041 416 GETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 416 ~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
..+.....-.| ++++..+.+|.+
T Consensus 236 I~~~~d~~kal--~lGAd~V~ig~~ 258 (299)
T cd02809 236 IRRGTDVLKAL--ALGADAVLIGRP 258 (299)
T ss_pred CCCHHHHHHHH--HcCCCEEEEcHH
Confidence 33444443444 466777666654
No 149
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=61.63 E-value=1.9e+02 Score=29.44 Aligned_cols=128 Identities=9% Similarity=-0.062 Sum_probs=82.1
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--------------CCCcCCHHHHHHHHhhcC-CeEE--eCCccccCHHHHHHH
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--------------PFDQDDWSSWASLQSSVD-IQLV--GDDLLVTNPKRIAEA 373 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--------------P~~~~D~~~~~~L~~~~~-~pI~--~dE~~~~~~~~~~~~ 373 (472)
..++.++.+++ .+.+++.++..||= |....|++.++.+++..+ ..+. ..= ...+.++++..
T Consensus 20 ~~f~~~~~~~i-~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~~~~dl~~a 97 (337)
T PRK08195 20 HQYTLEQVRAI-ARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP-GIGTVDDLKMA 97 (337)
T ss_pred CccCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc-CcccHHHHHHH
Confidence 45788988877 56689999999997 222346777788866654 4443 221 12246888888
Q ss_pred HHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC-CCCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 374 IQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHR-SGETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 374 i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~-~~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
.+.+ +|.+.+-. .+.=...+.+.++.|++.|+.+.+.-+ +....... .+..+...++..+.+-+..+
T Consensus 98 ~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 168 (337)
T PRK08195 98 YDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAG 168 (337)
T ss_pred HHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 7765 78887654 333356788999999999998754332 22233333 44555666777777555533
No 150
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.57 E-value=88 Score=30.47 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred CCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 337 PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 337 P~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
...--|++.++++++.+++||++.-- +.+++|+.++++...+|.+.+
T Consensus 179 ~~~G~d~~~i~~~~~~~~ipvIasGG-v~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 179 TMKGYDLELLKSFRNALKIPLIALGG-AGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CcCCCCHHHHHHHHhhCCCCEEEeCC-CCCHHHHHHHHHHCCCCEEEE
Confidence 34445899999999999988855442 568999999986556676543
No 151
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=61.44 E-value=45 Score=34.68 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=56.7
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccH------HHHHHHHHHHHHc--CCcEEecC
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTV------TESIQAALDSKSA--GWGVMVSH 413 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGi------tea~~ia~~A~a~--g~~~~v~~ 413 (472)
+|+..++|++..+.||+..+. .+.++++.+++.+ +|+|.+. ..||= +.+.-+..++++. ++++++.+
T Consensus 233 tW~di~~lr~~~~~pvivKgV--~s~~dA~~a~~~G-vd~I~Vs--~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dG 307 (381)
T PRK11197 233 SWKDLEWIRDFWDGPMVIKGI--LDPEDARDAVRFG-ADGIVVS--NHGGRQLDGVLSSARALPAIADAVKGDITILADS 307 (381)
T ss_pred CHHHHHHHHHhCCCCEEEEec--CCHHHHHHHHhCC-CCEEEEC--CCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeC
Confidence 678899999999999999995 5789999998876 7776653 34442 2222233344443 47776655
Q ss_pred CCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 414 RSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 414 ~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
. .-++... -=|+++++..+.+|.+
T Consensus 308 G-Ir~g~Di--~KALaLGA~~V~iGr~ 331 (381)
T PRK11197 308 G-IRNGLDV--VRMIALGADTVLLGRA 331 (381)
T ss_pred C-cCcHHHH--HHHHHcCcCceeEhHH
Confidence 2 2222222 2255566777666554
No 152
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.37 E-value=1.8e+02 Score=28.95 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=78.3
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC---------CCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCE
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED---------PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd---------P~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~ 381 (472)
..++.++-+++ .+.+.+.++..||= |-..+..+..+.|.+..++.+.+ ++.+..++...++.+ +|.
T Consensus 21 ~~~s~e~k~~i-a~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~---l~~~~~~ie~A~~~g-~~~ 95 (287)
T PRK05692 21 RFIPTADKIAL-IDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA---LTPNLKGLEAALAAG-ADE 95 (287)
T ss_pred CCcCHHHHHHH-HHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEE---EecCHHHHHHHHHcC-CCE
Confidence 45788888876 56688999999995 33334566677776543444432 234679998888764 566
Q ss_pred EEeccCCc---------c----cHHHHHHHHHHHHHcCCcEE------ecCC-CCCChhhH---HHHHHHhhcCCCcccC
Q 012041 382 LLLKVNQI---------G----TVTESIQAALDSKSAGWGVM------VSHR-SGETEDNF---IADLSVGLASGQIKTG 438 (472)
Q Consensus 382 i~ik~~k~---------G----Gitea~~ia~~A~a~g~~~~------v~~~-~~Et~~s~---~a~lAva~~~~~i~~g 438 (472)
+.+-++-. - -+..+.+++++|+++|+.+. .++. .+.+.... .+.-+..+++..+.+.
T Consensus 96 v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 175 (287)
T PRK05692 96 VAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLG 175 (287)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 66544321 1 23357789999999998863 2221 11222333 4555566778887755
Q ss_pred CCCC
Q 012041 439 APCR 442 (472)
Q Consensus 439 ~~~~ 442 (472)
+..+
T Consensus 176 DT~G 179 (287)
T PRK05692 176 DTIG 179 (287)
T ss_pred cccC
Confidence 5533
No 153
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=60.09 E-value=2.1e+02 Score=29.38 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCC--CCc-------CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCE
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDP--FDQ-------DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP--~~~-------~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~ 381 (472)
..++.++=+++ .+.|.+.++..||-- +.+ ++.+..+.+++..++.+. . .+.+..++...++.+ +|.
T Consensus 63 ~~~s~e~Ki~i-a~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~--~-l~~n~~die~A~~~g-~~~ 137 (347)
T PLN02746 63 NIVPTSVKVEL-IQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFP--V-LTPNLKGFEAAIAAG-AKE 137 (347)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCcee--E-EcCCHHHHHHHHHcC-cCE
Confidence 45788888877 566899999999953 222 445566777654343322 1 234789999998875 566
Q ss_pred EEeccCC---------cccHHHHH----HHHHHHHHcCCcEE------ecCCC-CCChhh---HHHHHHHhhcCCCcccC
Q 012041 382 LLLKVNQ---------IGTVTESI----QAALDSKSAGWGVM------VSHRS-GETEDN---FIADLSVGLASGQIKTG 438 (472)
Q Consensus 382 i~ik~~k---------~GGitea~----~ia~~A~a~g~~~~------v~~~~-~Et~~s---~~a~lAva~~~~~i~~g 438 (472)
+.+-++- --+..+++ +++++|+++|+.+. +++.. +.+... ..+.-++..++..+.+.
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~ 217 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLG 217 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 6654321 12345554 68999999999873 23211 112222 24555666788888766
Q ss_pred CCCC
Q 012041 439 APCR 442 (472)
Q Consensus 439 ~~~~ 442 (472)
+..+
T Consensus 218 DT~G 221 (347)
T PLN02746 218 DTIG 221 (347)
T ss_pred CCcC
Confidence 6543
No 154
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=59.24 E-value=2.4e+02 Score=30.64 Aligned_cols=129 Identities=7% Similarity=0.019 Sum_probs=78.3
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--CC-CcCCHHHHHHHHh-hc-CCeEEeC-----Ccc-ccCHHHHHHHHHcCCC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--PF-DQDDWSSWASLQS-SV-DIQLVGD-----DLL-VTNPKRIAEAIQKKSC 379 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P~-~~~D~~~~~~L~~-~~-~~pI~~d-----E~~-~~~~~~~~~~i~~~a~ 379 (472)
..++.++-+++ .+.|++.++..||= |. .++|++.+++|.+ .+ ++.+++- +.. ..+-..+..+++. .+
T Consensus 22 ~~~s~e~Kl~i-a~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~-g~ 99 (524)
T PRK12344 22 ISFSVEDKLRI-ARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDA-GT 99 (524)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhC-CC
Confidence 35789999887 56689999999998 43 5678888898876 22 3444431 110 1112344444443 35
Q ss_pred CEEEeccC-------------CcccHHHHHHHHHHHHHcCCcEEecCCCC----CChhhHHHHH---HHhhcCCCcccCC
Q 012041 380 NGLLLKVN-------------QIGTVTESIQAALDSKSAGWGVMVSHRSG----ETEDNFIADL---SVGLASGQIKTGA 439 (472)
Q Consensus 380 d~i~ik~~-------------k~GGitea~~ia~~A~a~g~~~~v~~~~~----Et~~s~~a~l---Ava~~~~~i~~g~ 439 (472)
+.+.+-+. +---+..+.+.+++|+++|..+.+++... .+...+...+ +...++..+.+.+
T Consensus 100 ~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~D 179 (524)
T PRK12344 100 PVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCD 179 (524)
T ss_pred CEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEcc
Confidence 66665432 11245567788899999999987765411 2334444444 4556777776555
Q ss_pred CC
Q 012041 440 PC 441 (472)
Q Consensus 440 ~~ 441 (472)
..
T Consensus 180 Tv 181 (524)
T PRK12344 180 TN 181 (524)
T ss_pred CC
Confidence 43
No 155
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=59.01 E-value=74 Score=32.26 Aligned_cols=116 Identities=7% Similarity=0.053 Sum_probs=64.5
Q ss_pred HHHHHHHhhC-Cee-EEeCCCCcC---CHHHHHHHHhhcCCe-EEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---
Q 012041 320 DLYKEFVRDF-PIV-SIEDPFDQD---DWSSWASLQSSVDIQ-LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG--- 390 (472)
Q Consensus 320 ~~~~~~l~~~-~l~-~iEdP~~~~---D~~~~~~L~~~~~~p-I~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G--- 390 (472)
+++..+++.. ... -+-|+=+-+ -++..++|++.++.| |+.++. .+.++.+.+++.+ +|.|.+-++-.+
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV--~t~e~a~~l~~aG-ad~I~V~~G~G~~~~ 173 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV--GTPEAVRELENAG-ADATKVGIGPGKVCI 173 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC--CCHHHHHHHHHcC-cCEEEECCCCCcccc
Confidence 4445555543 112 223443322 235577888888754 889985 3689999998876 577665532111
Q ss_pred -------cHH--HHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCC
Q 012041 391 -------TVT--ESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 391 -------Git--ea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~ 441 (472)
|.. .+.-+.+.+++.+++++.... ..+... +-=|+++++..+..|.+.
T Consensus 174 tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGG-Ir~~~D--i~KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 174 TKIKTGFGTGGWQLAALRWCAKAARKPIIADGG-IRTHGD--IAKSIRFGASMVMIGSLF 230 (321)
T ss_pred ceeeeccCCCchHHHHHHHHHHhcCCeEEEECC-cCcHHH--HHHHHHcCCCEEeechhh
Confidence 111 223455566677788765442 222222 233455677888777663
No 156
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=58.68 E-value=1.8e+02 Score=28.95 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=48.8
Q ss_pred HHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecCC
Q 012041 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--MVSHR 414 (472)
Q Consensus 347 ~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~v~~~ 414 (472)
+.+.++.++||+.-=-...+.+.+.+.++.| ++.+++|-+..- -|..+++++++|+++|+.+ -+||-
T Consensus 67 ~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 67 KRHADKMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHHCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 4445566666654222345788999999886 699999988764 3677899999999999887 66774
No 157
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=57.59 E-value=99 Score=29.35 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=32.9
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
-|++.++++++.+++||++.-- +++++++.+.+....+|.+.+
T Consensus 184 ~~~~~~~~i~~~~~ipvia~GG-i~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 184 YDLELIKTVSDAVSIPVIALGG-AGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCHHHHHHHHhhCCCCEEEECC-CCCHHHHHHHHHHcCCCEEEE
Confidence 4689999999998888855553 568899999666667777765
No 158
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=57.08 E-value=1e+02 Score=31.73 Aligned_cols=93 Identities=9% Similarity=0.131 Sum_probs=58.3
Q ss_pred CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEecc--CC--cccHHHHHHHHHHHHHc--CCcEEecCCC
Q 012041 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV--NQ--IGTVTESIQAALDSKSA--GWGVMVSHRS 415 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~--~k--~GGitea~~ia~~A~a~--g~~~~v~~~~ 415 (472)
+|+..++|++.+++||+.-+. .++++++.+.+.+ +|.|.+.= ++ -|+.+...-+.+++++. .+++++.+.
T Consensus 209 ~~~~l~~lr~~~~~PvivKgv--~~~~dA~~a~~~G-~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGG- 284 (351)
T cd04737 209 SPADIEFIAKISGLPVIVKGI--QSPEDADVAINAG-ADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSG- 284 (351)
T ss_pred CHHHHHHHHHHhCCcEEEecC--CCHHHHHHHHHcC-CCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECC-
Confidence 677889999999999988873 4788888887764 78877631 11 13444445556666666 478765442
Q ss_pred CCChhhHHHHHHHhhcCCCcccCCC
Q 012041 416 GETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 416 ~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
..++....-.| ++++..+.+|-+
T Consensus 285 Ir~g~Di~kaL--alGA~~V~iGr~ 307 (351)
T cd04737 285 VRRGEHVFKAL--ASGADAVAVGRP 307 (351)
T ss_pred CCCHHHHHHHH--HcCCCEEEECHH
Confidence 33333333344 456666655543
No 159
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=55.03 E-value=24 Score=35.77 Aligned_cols=50 Identities=16% Similarity=0.423 Sum_probs=42.6
Q ss_pred CCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 341 DDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 341 ~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
-||+..++|++.++ +||++... +.++++.++.++...+|.+++-=+-.|-
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGd-I~s~~~a~~~l~~tg~DgVMigRga~~n 234 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGD-IKSLEDAKEMLEYTGADGVMIGRGALGN 234 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCC-cCCHHHHHHHHHhhCCCEEEEcHHHccC
Confidence 59999999999999 99999885 7889999999999999999975443333
No 160
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=53.60 E-value=1.8e+02 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=33.7
Q ss_pred CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 339 ~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
..-|++.++++++.+++||++.-- +.+++++.++++. .+|.+.+
T Consensus 175 ~g~~~~~i~~i~~~~~ipvi~~GG-i~~~~di~~~~~~-Ga~gv~v 218 (234)
T cd04732 175 SGPNFELYKELAAATGIPVIASGG-VSSLDDIKALKEL-GVAGVIV 218 (234)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecC-CCCHHHHHHHHHC-CCCEEEE
Confidence 335789999999999988865553 5678999999886 4666655
No 161
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=53.49 E-value=1.1e+02 Score=32.43 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhC-CeeEEeCCCCcCCHHHHHHHHhhcC---CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC---
Q 012041 315 AQSLGDLYKEFVRDF-PIVSIEDPFDQDDWSSWASLQSSVD---IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN--- 387 (472)
Q Consensus 315 ~~eai~~~~~~l~~~-~l~~iEdP~~~~D~~~~~~L~~~~~---~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~--- 387 (472)
..++++.+.+++-+- +..++|+|.... ...+-+..+ ++|--|+. --+++.+.+.++..-+.++-+-++
T Consensus 164 ~q~al~l~~~~l~~pGd~v~vE~PtY~~----~~~~~~~~g~~~~~vp~d~~-G~~~e~le~~~~~~~~k~~y~~P~~qN 238 (459)
T COG1167 164 AQQALDLLLRLLLDPGDTVLVEDPTYPG----ALQALEALGARVIPVPVDED-GIDPEALEEALAQWKPKAVYVTPTFQN 238 (459)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCcHH----HHHHHHHcCCcEEecCCCCC-CCCHHHHHHHHhhcCCcEEEECCCCCC
Confidence 468888888887764 488999998744 333333333 45545664 457899999988776666665553
Q ss_pred ---CcccHHHHHHHHHHHHHcCCcEE
Q 012041 388 ---QIGTVTESIQAALDSKSAGWGVM 410 (472)
Q Consensus 388 ---k~GGitea~~ia~~A~a~g~~~~ 410 (472)
-+=....-++++++|+++++.++
T Consensus 239 PtG~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 239 PTGVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEE
Confidence 23346677889999999999974
No 162
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.94 E-value=1.5e+02 Score=27.83 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCC-HHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D-~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
+.+++++. .+.+-+.++..||=.+...+ .+.+++|+++.+ +.|-++- +.+.+++...++.++ |++.. +
T Consensus 20 ~~~~~~~~-~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGT--V~~~~~~~~a~~aGA-~fivs-----p 90 (206)
T PRK09140 20 TPDEALAH-VGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGT--VLSPEQVDRLADAGG-RLIVT-----P 90 (206)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEe--cCCHHHHHHHHHcCC-CEEEC-----C
Confidence 56778776 45566789999998886554 457888888886 4555554 457799999998875 65554 2
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 391 TVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
+.. .++.+.++..|+.++.|+.+. ++ +.-|...++.++++
T Consensus 91 ~~~--~~v~~~~~~~~~~~~~G~~t~-~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 NTD--PEVIRRAVALGMVVMPGVATP-TE----AFAALRAGAQALKL 130 (206)
T ss_pred CCC--HHHHHHHHHCCCcEEcccCCH-HH----HHHHHHcCCCEEEE
Confidence 222 267777888999987776421 11 34455567788774
No 163
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.59 E-value=2.4e+02 Score=27.74 Aligned_cols=128 Identities=14% Similarity=0.012 Sum_probs=80.2
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeCCC-----------CcCCHHHHHHHHhhcC-CeEEeCCcc---cc--------CHH
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIEDPF-----------DQDDWSSWASLQSSVD-IQLVGDDLL---VT--------NPK 368 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEdP~-----------~~~D~~~~~~L~~~~~-~pI~~dE~~---~~--------~~~ 368 (472)
.++.+|.++. .+.+++.++.+||=-. ..++++.++++++..+ +++.+=-.. .. ...
T Consensus 17 ~~~~~~~~~i-a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPI-AEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHH-HHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 4578888877 6678999999999854 5677888888887643 444321110 00 234
Q ss_pred HHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCC---CCCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 369 RIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHR---SGETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 369 ~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~---~~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+++...+. .+|.+.+-.... =+..+.+.+++|++.|+.+.+.=+ ........ .+..+...++..+.+.+..+
T Consensus 96 di~~~~~~-g~~~iri~~~~~-~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (275)
T cd07937 96 FVEKAAKN-GIDIFRIFDALN-DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG 173 (275)
T ss_pred HHHHHHHc-CCCEEEEeecCC-hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 55554443 478877754332 378899999999999988653211 12333333 44455666788887666644
No 164
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=51.57 E-value=74 Score=32.41 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccH
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTV 392 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGi 392 (472)
+.++ .+.+.+.+++++|.|+=.|++.++++-+.++ ..+ ..|...|. ++..-++.+.+.+ --+.++.+- .++
T Consensus 74 ~~e~-~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~--~v~~~KIaS~~~--~n~pLL~~~A~~g--kPvilStGm-atl 145 (329)
T TIGR03569 74 SEED-HRELKEYCESKGIEFLSTPFDLESADFLEDL--GVPRFKIPSGEI--TNAPLLKKIARFG--KPVILSTGM-ATL 145 (329)
T ss_pred CHHH-HHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCEEEECcccc--cCHHHHHHHHhcC--CcEEEECCC-CCH
Confidence 3444 4455788899999999999987766555443 022 34445542 3323233332221 224444444 245
Q ss_pred HHHHHHHHHHHHcCC
Q 012041 393 TESIQAALDSKSAGW 407 (472)
Q Consensus 393 tea~~ia~~A~a~g~ 407 (472)
.|..+++++.+++|.
T Consensus 146 ~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 146 EEIEAAVGVLRDAGT 160 (329)
T ss_pred HHHHHHHHHHHHcCC
Confidence 555555555554443
No 165
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=50.66 E-value=34 Score=33.18 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC-CcccHHHHHHHHHHHHHcCCcE
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN-QIGTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~-k~GGitea~~ia~~A~a~g~~~ 409 (472)
-|++.++++++.+++||++.-- +.+++|+.++++...+|.+.+--. .-|.+ ...++.+.+++.|+.+
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GG-v~s~~d~~~~~~~~G~~gvivg~al~~~~~-~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGG-AGNLEHFVEAFTEGGADAALAASIFHFGEI-TIGELKAYLAEQGIPV 251 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECC-CCCHHHHHHHHHhCCccEEeEhHHHHcCCC-CHHHHHHHHHHCCCcc
Confidence 4789999999998887754442 467899999988755776666332 23433 4446666667788764
No 166
>TIGR03586 PseI pseudaminic acid synthase.
Probab=50.59 E-value=1.1e+02 Score=31.27 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHH
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L 349 (472)
+.++.. .+.+.+++++|.|+=.|++.++.+-+.++
T Consensus 75 ~~e~~~-~L~~~~~~~Gi~~~stpfd~~svd~l~~~ 109 (327)
T TIGR03586 75 PWEWHK-ELFERAKELGLTIFSSPFDETAVDFLESL 109 (327)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEccCCHHHHHHHHHc
Confidence 344333 34666889999999999987776655544
No 167
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=49.38 E-value=7 Score=26.39 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=10.8
Q ss_pred CCcchhhhhhhhhcC
Q 012041 27 YRPMRVQCSVASTAS 41 (472)
Q Consensus 27 ~~p~~~~~~~~~~~~ 41 (472)
++|.||+.+.|+||+
T Consensus 17 ~qP~Di~~F~a~yF~ 31 (38)
T PF02197_consen 17 EQPDDILQFAADYFE 31 (38)
T ss_dssp H--S-HHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHH
Confidence 589999999999994
No 168
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=49.37 E-value=3.6e+02 Score=28.90 Aligned_cols=129 Identities=15% Similarity=0.157 Sum_probs=80.4
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeC----C-------CCcCCHHHHHHHHhhcC-CeE----EeCCcccc--CHHH----
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIED----P-------FDQDDWSSWASLQSSVD-IQL----VGDDLLVT--NPKR---- 369 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEd----P-------~~~~D~~~~~~L~~~~~-~pI----~~dE~~~~--~~~~---- 369 (472)
+++.++++.. +..+++.++..||= - +..++|+-++.+++.++ +++ -|-....+ -+.|
T Consensus 31 r~~t~d~l~i-a~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~ 109 (468)
T PRK12581 31 RLSIEDMLPV-LTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDK 109 (468)
T ss_pred CCCHHHHHHH-HHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHH
Confidence 4678888876 67789999999987 2 44688999999999886 333 22111111 1234
Q ss_pred HHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcE--EecCC-CCCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 370 IAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGV--MVSHR-SGETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 370 ~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~--~v~~~-~~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+-+......+|++.+=- .+.=+..+...++.++..|..+ +++++ +.+-.... .+.-+..+++..+.+.+..+
T Consensus 110 fv~~a~~~Gidi~Rifd-~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG 187 (468)
T PRK12581 110 FISLSAQNGIDVFRIFD-ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAG 187 (468)
T ss_pred HHHHHHHCCCCEEEEcc-cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 23333455688888733 4446888889999999999874 34442 11112233 34445566788887665544
No 169
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=49.12 E-value=1.6e+02 Score=28.23 Aligned_cols=60 Identities=8% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHhhCCeeEE-------eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc--CCCCEEEe
Q 012041 324 EFVRDFPIVSI-------EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK--KSCNGLLL 384 (472)
Q Consensus 324 ~~l~~~~l~~i-------EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~--~a~d~i~i 384 (472)
+.+++.++.+| ++....-|++.++++++.+++||++.-- +++++|+.++.+. ..+|.+.+
T Consensus 153 ~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGG-i~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 153 ERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGG-VSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred HHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCC-CCCHHHHHHHhhhccCCccEEEE
Confidence 34566664322 3334445899999999999988855542 5688999988643 35777665
No 170
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=49.02 E-value=3.7e+02 Score=28.86 Aligned_cols=119 Identities=13% Similarity=0.264 Sum_probs=79.6
Q ss_pred CCccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcC--C----C
Q 012041 310 AHVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKK--S----C 379 (472)
Q Consensus 310 n~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~--a----~ 379 (472)
+..++++|.++. .+.+.++++..||=-++ .+|++..+.+.+..+ .|.+..-. .....+++..++.. + +
T Consensus 73 ga~~~~~qK~ei-ar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l~-rc~~~di~~tvEAl~~aKr~~V 150 (560)
T KOG2367|consen 73 GAFLTTEQKLEI-ARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTLI-RCHMDDIERTVEALKYAKRPRV 150 (560)
T ss_pred CCcCCcHHHHHH-HHHHHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEee-ccchHHHHHHHHHhhccCcceE
Confidence 456788999987 67789999999997665 468888888888777 44443332 33557777766632 2 4
Q ss_pred CEEE----------eccCCcccHHHHHHHHHHHHHcC-CcEEecC-CCCCChhhHHHHHHHhh
Q 012041 380 NGLL----------LKVNQIGTVTESIQAALDSKSAG-WGVMVSH-RSGETEDNFIADLSVGL 430 (472)
Q Consensus 380 d~i~----------ik~~k~GGitea~~ia~~A~a~g-~~~~v~~-~~~Et~~s~~a~lAva~ 430 (472)
+.+. .+-.+---|.-+.+..+++++.| +.+-.++ ..+.|+-.++..+-=++
T Consensus 151 h~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~~aV 213 (560)
T KOG2367|consen 151 HVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEILGAV 213 (560)
T ss_pred EEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccCcHHHHHHHHHHH
Confidence 4443 23344556788888999999999 7776665 33455555666654443
No 171
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=48.96 E-value=1.4e+02 Score=28.62 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCcEEecCCCCC------ChhhHHHHHHHhhcCCCcccCCCCCchhH
Q 012041 394 ESIQAALDSKSAGWGVMVSHRSGE------TEDNFIADLSVGLASGQIKTGAPCRSERL 446 (472)
Q Consensus 394 ea~~ia~~A~a~g~~~~v~~~~~E------t~~s~~a~lAva~~~~~i~~g~~~~~e~~ 446 (472)
+..+.+..+++.|+..++-|.... .....+..+.-.+..+.+-.|+....+.+
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di 208 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHF 208 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHH
Confidence 345666666667766444332111 01123444444445566666666544444
No 172
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.57 E-value=2.4e+02 Score=27.37 Aligned_cols=81 Identities=7% Similarity=0.161 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccC---HHHHHHHHHcCCCCEEEeccCCcc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTN---PKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~---~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
+-+++++.+.+.|++.++.||-+=.....+. .++++.+++|.+-.+.+.-+ ..++
T Consensus 135 sn~~aM~~~m~~Lk~r~l~flDs~T~a~S~a--~~iAk~~gVp~~~rdvfLD~e~~~~~V-------------------- 192 (250)
T COG2861 135 SNEDAMEKLMEALKERGLYFLDSGTIANSLA--GKIAKEIGVPVIKRDVFLDDEDTEAAV-------------------- 192 (250)
T ss_pred CcHHHHHHHHHHHHHCCeEEEcccccccchh--hhhHhhcCCceeeeeeeecCcCCHHHH--------------------
Confidence 3467888888889999999998877765443 35667777776554433222 2222
Q ss_pred cHHHHHHHHHHHHHcCCcEEecCCCCC
Q 012041 391 TVTESIQAALDSKSAGWGVMVSHRSGE 417 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~~~~v~~~~~E 417 (472)
.-+..+..++|+++|-.+-+||-.-+
T Consensus 193 -~kql~~~~~~Ark~G~ai~IGh~~~~ 218 (250)
T COG2861 193 -LKQLDAAEKLARKNGSAIGIGHPHKN 218 (250)
T ss_pred -HHHHHHHHHHHHhcCceEEecCCchh
Confidence 34667888999999999999995333
No 173
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=48.50 E-value=92 Score=31.51 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=25.9
Q ss_pred HHHHHHHHhhc--CCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 343 ~~~~~~L~~~~--~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
++..+++++.+ ++||++--- +++.+|+.+++..+ +|.+++-
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GG-I~t~~da~e~l~aG-Ad~V~vg 309 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGG-ISSGEDAYEKIRAG-ASLVQLY 309 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECC-CCCHHHHHHHHHcC-CCHHhcc
Confidence 45556666666 467765442 45678888877755 7776653
No 174
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=47.99 E-value=2.3e+02 Score=30.98 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhCCee-EEeCCCCcC------CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe-cc--C
Q 012041 318 LGDLYKEFVRDFPIV-SIEDPFDQD------DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL-KV--N 387 (472)
Q Consensus 318 ai~~~~~~l~~~~l~-~iEdP~~~~------D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i-k~--~ 387 (472)
++++ .+.+++++.. .+=-=++.| |++.++++++.+++||++--- +.+++++.++++...+|.... .+ -
T Consensus 440 ~~~~-~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG-~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 440 AYEL-AKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSG-AGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred HHHH-HHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECC-CCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 3444 3335666632 222334433 899999999999998865542 568999999998665665443 22 2
Q ss_pred CcccHHHHHHHHHHHHHcCCcE
Q 012041 388 QIGTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 388 k~GGitea~~ia~~A~a~g~~~ 409 (472)
+--++.+.+ +..+..|+.+
T Consensus 518 ~~~~~~~~k---~~l~~~gi~v 536 (538)
T PLN02617 518 KEVPISSVK---EHLLEEGIET 536 (538)
T ss_pred CCCCHHHHH---HHHHHCCCcc
Confidence 222344444 4555667664
No 175
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=47.14 E-value=1.6e+02 Score=24.19 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=52.8
Q ss_pred HhhCCeeEEeCCCCcCCHHHHHHHHh--hcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHH
Q 012041 326 VRDFPIVSIEDPFDQDDWSSWASLQS--SVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDS 402 (472)
Q Consensus 326 l~~~~l~~iEdP~~~~D~~~~~~L~~--~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A 402 (472)
.+++++..+.+ +.++-+ ..+ +-|+.... ...+-+.++++.+. +++.=||.-. .+.++.++.++|
T Consensus 43 ~~~~~~~~~~~---------~~~ll~~~~~D~V~I~tp~~--~h~~~~~~~l~~g~-~v~~EKP~~~-~~~~~~~l~~~a 109 (120)
T PF01408_consen 43 AEKYGIPVYTD---------LEELLADEDVDAVIIATPPS--SHAEIAKKALEAGK-HVLVEKPLAL-TLEEAEELVEAA 109 (120)
T ss_dssp HHHTTSEEESS---------HHHHHHHTTESEEEEESSGG--GHHHHHHHHHHTTS-EEEEESSSSS-SHHHHHHHHHHH
T ss_pred HHHhcccchhH---------HHHHHHhhcCCEEEEecCCc--chHHHHHHHHHcCC-EEEEEcCCcC-CHHHHHHHHHHH
Confidence 45577764443 445554 345 45555553 34577778888876 7777777655 799999999999
Q ss_pred HHcCCcEEecC
Q 012041 403 KSAGWGVMVSH 413 (472)
Q Consensus 403 ~a~g~~~~v~~ 413 (472)
+.+|..++++|
T Consensus 110 ~~~~~~~~Vg~ 120 (120)
T PF01408_consen 110 KEKGVKVMVGY 120 (120)
T ss_dssp HHHTSCEEEE-
T ss_pred HHhCCEEEEeC
Confidence 99999999886
No 176
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=46.40 E-value=2.3e+02 Score=28.79 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=62.2
Q ss_pred CCccCHHHHHHHHHHHHhh-CCeeEE------eCCCCcCCHHHHHHHHhhc---C--C-eEEeCCccccCHHHHHHHHHc
Q 012041 310 AHVLSAQSLGDLYKEFVRD-FPIVSI------EDPFDQDDWSSWASLQSSV---D--I-QLVGDDLLVTNPKRIAEAIQK 376 (472)
Q Consensus 310 n~~~s~~eai~~~~~~l~~-~~l~~i------EdP~~~~D~~~~~~L~~~~---~--~-pI~~dE~~~~~~~~~~~~i~~ 376 (472)
..-.|++||++. +++..+ ++..|| |++..-.|....-+-.+.+ + + |+|.|+. ...+++.+.
T Consensus 144 ag~~ta~eAv~~-a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~-----~~a~~l~~~ 217 (326)
T PRK11840 144 AGCYTAEEAVRT-LRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDP-----IAAKRLEDA 217 (326)
T ss_pred CCCCCHHHHHHH-HHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHHHHHhc
Confidence 346799999976 777666 456676 4555555555554444444 4 5 8888873 566777777
Q ss_pred CCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcEEecCC
Q 012041 377 KSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGVMVSHR 414 (472)
Q Consensus 377 ~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~~v~~~ 414 (472)
++ -.+.|=..-+| |+++-..+-.+.+...++++++..
T Consensus 218 g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAG 257 (326)
T PRK11840 218 GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAG 257 (326)
T ss_pred CC-EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCC
Confidence 66 55555232222 466656666677778899988764
No 177
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=46.32 E-value=1.1e+02 Score=31.41 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHH-----hhCCeeEEeCCCCcCCHHHHHHHHhhcCC---eEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 315 AQSLGDLYKEFV-----RDFPIVSIEDPFDQDDWSSWASLQSSVDI---QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 315 ~~eai~~~~~~l-----~~~~l~~iEdP~~~~D~~~~~~L~~~~~~---pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..+++..+...+ ++-+-..+.+|-.+-.+..|..+.+..++ .+-.++....+++++.+.+..+ ..++.+--
T Consensus 87 ~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~ 165 (398)
T TIGR03392 87 TTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR-TRILALGQ 165 (398)
T ss_pred hHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC-ceEEEEEC
Confidence 345655544433 33345667777766666778877777663 2223432233578888887654 45554432
Q ss_pred --CCcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 387 --NQIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 387 --~k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
+-.|.+.+..+|+++|+++|+.+++-.
T Consensus 166 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~ 194 (398)
T TIGR03392 166 MSNVTGGCPDLARAITLAHQYGAVVVVDG 194 (398)
T ss_pred ccccccccCCHHHHHHHHHHcCCEEEEEh
Confidence 467889999999999999998876633
No 178
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=45.86 E-value=1e+02 Score=31.64 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHH-----hhCCeeEEeCCCCcCCHHHHHHHHhhcCC---eEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 315 AQSLGDLYKEFV-----RDFPIVSIEDPFDQDDWSSWASLQSSVDI---QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 315 ~~eai~~~~~~l-----~~~~l~~iEdP~~~~D~~~~~~L~~~~~~---pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..+++..+.+.+ ++-+-..+.+|-.+-.+..|..+.+..++ .|-.++....+++++.+.+..+ ..++.+--
T Consensus 90 ~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-t~lv~i~~ 168 (401)
T PRK10874 90 TTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR-TRILALGQ 168 (401)
T ss_pred HHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC-cEEEEEeC
Confidence 456665555444 22344566677666666778888776663 2323443334678888888543 45554432
Q ss_pred --CCcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 387 --NQIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 387 --~k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
+..|.+.+..+|+++|+++|+.+++-.
T Consensus 169 ~~n~tG~~~~~~~i~~l~~~~g~~~ivD~ 197 (401)
T PRK10874 169 MSNVTGGCPDLARAITLAHQAGMVVMVDG 197 (401)
T ss_pred CcccccCcCCHHHHHHHHHHcCCEEEEEC
Confidence 467888899999999999998876644
No 179
>PRK06852 aldolase; Validated
Probab=45.41 E-value=99 Score=31.13 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=49.9
Q ss_pred HHHHHHHcCC-----CCEEEeccCCcc-----cHHHHHHHHHHHHHcCCcEEec---CC---CCCC---hhhHHHHHHHh
Q 012041 369 RIAEAIQKKS-----CNGLLLKVNQIG-----TVTESIQAALDSKSAGWGVMVS---HR---SGET---EDNFIADLSVG 429 (472)
Q Consensus 369 ~~~~~i~~~a-----~d~i~ik~~k~G-----Gitea~~ia~~A~a~g~~~~v~---~~---~~Et---~~s~~a~lAva 429 (472)
++.+.++.++ +|.|.+-+..-+ -+.++-+++..|+.+|+++++- -. ..+. .+..++++|+=
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaE 199 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAAC 199 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHH
Confidence 4555666664 777777665422 4677888889999999998751 11 1111 24568899999
Q ss_pred hcCCCcccCCC
Q 012041 430 LASGQIKTGAP 440 (472)
Q Consensus 430 ~~~~~i~~g~~ 440 (472)
+++.++|.-.+
T Consensus 200 LGADIVKv~y~ 210 (304)
T PRK06852 200 LGADFVKVNYP 210 (304)
T ss_pred HcCCEEEecCC
Confidence 99999997776
No 180
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=45.27 E-value=90 Score=30.56 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
+++-.++-++++.+.-+++++--+=|-..+++.+..++. .++.-++--. +.+ .++.+.+. +.--.|++|=++..
T Consensus 54 qG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~---vDilQIgArn-~rn-~~LL~a~g-~t~kpV~lKrG~~~ 127 (258)
T TIGR01362 54 RGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV---VDIIQIPAFL-CRQ-TDLLVAAA-KTGRIVNVKKGQFL 127 (258)
T ss_pred CCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh---CcEEEeCchh-cch-HHHHHHHh-ccCCeEEecCCCcC
Confidence 344556777887777677887766666666555554444 5532233332 233 34433332 23558999999999
Q ss_pred cHHHHHHHHHHHHHcCC-cEEecC
Q 012041 391 TVTESIQAALDSKSAGW-GVMVSH 413 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~-~~~v~~ 413 (472)
.+.+++-++++..+.|- ++++-+
T Consensus 128 t~~e~l~aaeyi~~~Gn~~viLcE 151 (258)
T TIGR01362 128 SPWDMKNVVEKVLSTGNKNILLCE 151 (258)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEe
Confidence 99999999999988874 455544
No 181
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.24 E-value=2.1e+02 Score=27.49 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEe------CCCCc-------------------CCHHHHHHHHhhcCCeEEe--C-Ccccc
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIE------DPFDQ-------------------DDWSSWASLQSSVDIQLVG--D-DLLVT 365 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iE------dP~~~-------------------~D~~~~~~L~~~~~~pI~~--d-E~~~~ 365 (472)
+.+...+.+ +.+++.+..+|| ||+.. .-++..+++++...+|+.. - +...+
T Consensus 12 ~~~~~~~~~-~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~ 90 (242)
T cd04724 12 DLETTLEIL-KALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQ 90 (242)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHH
Confidence 455566664 446777777776 44443 1245667777766666532 2 11111
Q ss_pred -CHHHHHH-HHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 366 -NPKRIAE-AIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 366 -~~~~~~~-~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
.++++.+ +.+.++--++.+|+. +.+..++.+.++++|+..++-.
T Consensus 91 ~G~~~fi~~~~~aG~~giiipDl~----~ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIPDLP----PEEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEECCCC----HHHHHHHHHHHHHcCCcEEEEe
Confidence 1355554 455555446666775 4588899999999999875544
No 182
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=44.06 E-value=2e+02 Score=28.95 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecc--ccccccc------------C-cceeecCCCCCCCCCCccCHHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDVA--ASEFFTK------------D-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~~--a~~~~~~------------~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~ 325 (472)
.-++.++|+++.++|+. ++.||-=.+ ++.||.+ + ..|+.+.. +..||++....-
T Consensus 174 DGrV~aIR~aLd~ag~~-~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpa----------N~~EAlrE~~lD 242 (330)
T COG0113 174 DGRVGAIREALDEAGFI-DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPA----------NRREALREIELD 242 (330)
T ss_pred cchHHHHHHHHHHcCCC-cceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCc----------CHHHHHHHHHhh
Confidence 45788999999999874 666663221 2334421 1 35666521 467777664433
Q ss_pred Hhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 012041 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKS 404 (472)
Q Consensus 326 l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a 404 (472)
+++ .++.++---++ -++-.+++++.+++|+++-..+ .-..-++...++|..|- =+-.++...--+.
T Consensus 243 ~~EGAD~lMVKPal~--YLDIi~~vk~~~~lP~~AYqVS-GEYaMikAAa~nGwide----------~~~vlEsL~~~kR 309 (330)
T COG0113 243 IEEGADILMVKPALP--YLDIIRRVKEEFNLPVAAYQVS-GEYAMIKAAAQNGWIDE----------EKVVLESLTSIKR 309 (330)
T ss_pred HhcCCcEEEEcCCch--HHHHHHHHHHhcCCCeEEEecc-hHHHHHHHHHHcCCcch----------HHHHHHHHHHHHh
Confidence 344 66777765565 3577899999999999887743 22355566667776662 2233444444445
Q ss_pred cCCcEEe
Q 012041 405 AGWGVMV 411 (472)
Q Consensus 405 ~g~~~~v 411 (472)
+|-..++
T Consensus 310 AGAd~Ii 316 (330)
T COG0113 310 AGADLII 316 (330)
T ss_pred cCCCEEE
Confidence 5666544
No 183
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=44.06 E-value=2.5e+02 Score=27.14 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhh-----CCeeEEeCCCCcC-----CHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc--CCCCE
Q 012041 314 SAQSLGDLYKEFVRD-----FPIVSIEDPFDQD-----DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK--KSCNG 381 (472)
Q Consensus 314 s~~eai~~~~~~l~~-----~~l~~iEdP~~~~-----D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~--~a~d~ 381 (472)
+.+.+.+.+.+.+++ .++.++-.|-... -++.+.++++.-.+.-+|= +..++..+.++++. ...|+
T Consensus 91 ~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~~ 168 (285)
T cd06660 91 SPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGV--SNFSAEQLEEALAAAGVPPAV 168 (285)
T ss_pred CHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEe--eCCCHHHHHHHHHhhCCCceE
Confidence 444444333444444 3566777775433 2344455554444544442 22356788888877 78999
Q ss_pred EEeccCCcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 382 LLLKVNQIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 382 i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
+|+..+-+---.+ ..+...|+++|+.++...
T Consensus 169 ~q~~~n~~~~~~~-~~~~~~~~~~gi~v~~~~ 199 (285)
T cd06660 169 NQVEYNLLDRQAE-EELLPYCREHGIGVIAYS 199 (285)
T ss_pred EecccCcccCchH-HHHHHHHHHcCcEEEEec
Confidence 9988875432222 278899999999986533
No 184
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.29 E-value=3e+02 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=32.6
Q ss_pred CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 339 ~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
..-|++.++++++.+.+||++.-- +++++++.++.+.+ ++.+.+
T Consensus 178 ~g~~~~~i~~i~~~~~iPvia~GG-I~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 178 EGVNTEPVKELVDSVDIPVIASGG-VTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCC-CCCHHHHHHHHHcC-CCEEEE
Confidence 445789999999999988865553 56789999976654 555554
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.17 E-value=4.4e+02 Score=28.08 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=79.3
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeCC-----------CCcCCHHHHHHHHhhcC-CeEE--eC--Cc--ccc-----CHH
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIEDP-----------FDQDDWSSWASLQSSVD-IQLV--GD--DL--LVT-----NPK 368 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEdP-----------~~~~D~~~~~~L~~~~~-~pI~--~d--E~--~~~-----~~~ 368 (472)
.++.++.++. .+.+++.++..||== +.+++++.++.+++..+ +++. .- .. +.+ ...
T Consensus 22 ~~~t~dkl~i-a~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPI-LEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHH-HHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 4678888876 566899999999984 56778899999988754 6553 11 00 000 124
Q ss_pred HHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE--ecCCCC-CChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 369 RIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVM--VSHRSG-ETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 369 ~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~--v~~~~~-Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+++..++. .+|++.+-..-.- +.+..+++++|+++|..+. ++.... -..... .+.-+..+++..+.+.+..+
T Consensus 101 ~v~~A~~~-Gvd~irif~~lnd-~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (448)
T PRK12331 101 FVQKSVEN-GIDIIRIFDALND-VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG 178 (448)
T ss_pred HHHHHHHC-CCCEEEEEEecCc-HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 55556655 4788887543222 3578889999999997642 333211 112222 34445666788877655544
No 186
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=42.98 E-value=1.1e+02 Score=29.93 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=65.3
Q ss_pred ccCHHHHHHHHHHHHhhCC---eeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 312 VLSAQSLGDLYKEFVRDFP---IVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~---l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
..++.+.... .++.+ |.-+ |+.+-..+++.++.+++.+++||.-.+. +-++.++.+.-..| +|+|.+=+.
T Consensus 67 ~~d~~~~a~~----y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDF-Iid~~QI~eA~~~G-ADaVLLI~~ 140 (254)
T PF00218_consen 67 DFDPAEIAKA----YEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDF-IIDPYQIYEARAAG-ADAVLLIAA 140 (254)
T ss_dssp S-SHHHHHHH----HHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES----SHHHHHHHHHTT--SEEEEEGG
T ss_pred cCCHHHHHHH----HHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccC-CCCHHHHHHHHHcC-CCEeehhHH
Confidence 3466665444 34444 5544 6667778999999999999999999985 66788888876665 788887666
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 388 QIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 388 k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
-.+ -....++.++|+..|+.+.+--
T Consensus 141 ~L~-~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 141 ILS-DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp GSG-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred hCC-HHHHHHHHHHHHHcCCCeEEEE
Confidence 664 4567899999999999987643
No 187
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=42.88 E-value=2.6e+02 Score=27.29 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=65.2
Q ss_pred CccCHHHHHHHHHHHHhh-CCeeEEe-----CC--CCcCCHHHHHHHHhhc--C---CeEEeCCccccCHHHHHHHHHcC
Q 012041 311 HVLSAQSLGDLYKEFVRD-FPIVSIE-----DP--FDQDDWSSWASLQSSV--D---IQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~-~~l~~iE-----dP--~~~~D~~~~~~L~~~~--~---~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
.-.|++||++. +++..+ ++..||- || +-+|..+-.+.-+.-+ + +|+|.|+. ...+++.+.
T Consensus 71 G~~ta~eAv~~-a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~-----~~ar~l~~~- 143 (248)
T cd04728 71 GCRTAEEAVRT-ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDP-----VLAKRLEDA- 143 (248)
T ss_pred CCCCHHHHHHH-HHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHHHHHHc-
Confidence 45689999976 676666 4556662 33 2333333333322221 3 68888874 445555555
Q ss_pred CCCEEEe--cc-CCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCC
Q 012041 378 SCNGLLL--KV-NQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGA 439 (472)
Q Consensus 378 a~d~i~i--k~-~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~ 439 (472)
.|+++.+ .+ +.--|+++---+..+.+..++++++....+... -+..++-+|+.-+..|.
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpe---da~~AmelGAdgVlV~S 205 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPS---DAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHH---HHHHHHHcCCCEEEECh
Confidence 6888876 33 222256554444556666789988776432221 13344445665555443
No 188
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=42.75 E-value=96 Score=28.46 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=43.7
Q ss_pred HHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 323 KEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 323 ~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
.+.+++....++| =+|-==..-.+++.+++++||+++-+ +.+.+++..++..||+-
T Consensus 114 ~~~i~~~~pD~iE-vLPGv~Pkvi~~i~~~t~~piIAGGL-i~t~Eev~~Al~aGA~a 169 (181)
T COG1954 114 IKQIEKSEPDFIE-VLPGVMPKVIKEITEKTHIPIIAGGL-IETEEEVREALKAGAVA 169 (181)
T ss_pred HHHHHHcCCCEEE-EcCcccHHHHHHHHHhcCCCEEeccc-cccHHHHHHHHHhCcEE
Confidence 4456677788887 45544557789999999999999997 56679999999988764
No 189
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=42.46 E-value=3.3e+02 Score=29.54 Aligned_cols=130 Identities=9% Similarity=0.178 Sum_probs=75.8
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhcC---------CeEEeCCccccCHHHHHHHHHcC-
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSVD---------IQLVGDDLLVTNPKRIAEAIQKK- 377 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~~---------~pI~~dE~~~~~~~~~~~~i~~~- 377 (472)
..++.+|-+++ .+.|++.++..||=-++ ++|.+..+++.+..+ ++.+..= ......|+...++..
T Consensus 101 v~fs~eeKi~I-a~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~-~R~~~~dId~a~~a~~ 178 (503)
T PLN03228 101 GSLTPPQKLEI-ARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGI-ARCKKRDIEAAWEALK 178 (503)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeee-cccCHhhHHHHHHhhc
Confidence 45789998877 66789999999998665 456677777765421 1222110 112345777766542
Q ss_pred --CCCEEEeccC-------------CcccHHHHHHHHHHHHHcCCc-EEecC-CCCCChhhHHH---HHHHhhcCCCccc
Q 012041 378 --SCNGLLLKVN-------------QIGTVTESIQAALDSKSAGWG-VMVSH-RSGETEDNFIA---DLSVGLASGQIKT 437 (472)
Q Consensus 378 --a~d~i~ik~~-------------k~GGitea~~ia~~A~a~g~~-~~v~~-~~~Et~~s~~a---~lAva~~~~~i~~ 437 (472)
.++.+.+-+. +-.-+..+.+++++|+++|.. +.+++ ....+...+.. ..+...++..+.+
T Consensus 179 ~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l 258 (503)
T PLN03228 179 YAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGI 258 (503)
T ss_pred ccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEE
Confidence 2344443321 223355567788899999986 66666 22334444434 4444556777765
Q ss_pred CCCCC
Q 012041 438 GAPCR 442 (472)
Q Consensus 438 g~~~~ 442 (472)
.+..+
T Consensus 259 ~DTvG 263 (503)
T PLN03228 259 ADTVG 263 (503)
T ss_pred ecCCC
Confidence 55533
No 190
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=42.36 E-value=3.3e+02 Score=26.49 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=70.2
Q ss_pred ccCHHHHHHHHHHHHhhCC---eeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 312 VLSAQSLGDLYKEFVRDFP---IVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~---l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
.+++.+.... .++.+ |.-+ |.-+-..+++.++++++.+.+||..-+. +-++.++.+.... .+|++.+=..
T Consensus 60 ~~d~~~~A~~----y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDF-Iid~~QI~ea~~~-GADavLLI~~ 133 (247)
T PRK13957 60 DYHPVQIAKT----YETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDF-ILDEIQIREARAF-GASAILLIVR 133 (247)
T ss_pred CCCHHHHHHH----HHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccc-cCCHHHHHHHHHc-CCCEEEeEHh
Confidence 3566654433 44444 5544 5556678999999999999999999995 6778888887764 4788877665
Q ss_pred CcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 388 QIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 388 k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
-.+ -....+..+.|+..|+.+.+--
T Consensus 134 ~L~-~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 134 ILT-PSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred hCC-HHHHHHHHHHHHHcCCceEEEE
Confidence 554 4478889999999999987643
No 191
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.36 E-value=3.2e+02 Score=26.21 Aligned_cols=102 Identities=13% Similarity=0.216 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCee-EEeCCCCc--
Q 012041 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIV-SIEDPFDQ-- 340 (472)
Q Consensus 264 l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~-~iEdP~~~-- 340 (472)
.+.++++.+.-| +.+.+.+|+-....+.+ + |. .+..+++.+.++. ++++++. .|=-.+..
T Consensus 112 ~~~l~~~~~~fg--~~ivvslD~~~g~v~~~-g-w~---------~~~~~~~~~~~~~----~~~~g~~~ii~tdi~~dG 174 (234)
T PRK13587 112 TDWLKEMAHTFP--GRIYLSVDAYGEDIKVN-G-WE---------EDTELNLFSFVRQ----LSDIPLGGIIYTDIAKDG 174 (234)
T ss_pred HHHHHHHHHHcC--CCEEEEEEeeCCEEEec-C-Cc---------ccCCCCHHHHHHH----HHHcCCCEEEEecccCcC
Confidence 344556655543 36889999843322211 1 21 1234566665433 4445422 22222322
Q ss_pred ----CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 341 ----DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 341 ----~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
-|++.++++++.+++||+..-- +.+++|+.++.+.+ ++.+.+
T Consensus 175 t~~G~~~~li~~l~~~~~ipvi~~GG-i~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 175 KMSGPNFELTGQLVKATTIPVIASGG-IRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred CCCccCHHHHHHHHHhCCCCEEEeCC-CCCHHHHHHHHHcC-CCEEEE
Confidence 3789999999988877754442 56889999998765 554443
No 192
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=42.22 E-value=3.4e+02 Score=26.53 Aligned_cols=126 Identities=11% Similarity=0.085 Sum_probs=76.7
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..++.++.+++ .+.|.+.++..||=-.| +++.+..+.+.+... ..+.+- ...+.+++...++.+ +|.+.+-+
T Consensus 17 ~~~s~~~k~~i-~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~--~r~~~~di~~a~~~g-~~~i~i~~ 92 (262)
T cd07948 17 AFFDTEDKIEI-AKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTH--IRCHMDDARIAVETG-VDGVDLVF 92 (262)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEE--ecCCHHHHHHHHHcC-cCEEEEEE
Confidence 45789999887 45688999999998443 344455555543221 233221 134678999988864 67777644
Q ss_pred C---------CcccHHH----HHHHHHHHHHcCCcEEecCCCC-CChhh---HHHHHHHhhcCCCcccCCC
Q 012041 387 N---------QIGTVTE----SIQAALDSKSAGWGVMVSHRSG-ETEDN---FIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 387 ~---------k~GGite----a~~ia~~A~a~g~~~~v~~~~~-Et~~s---~~a~lAva~~~~~i~~g~~ 440 (472)
+ ..-+..+ +.+++++|++.|+.+.++-... .+... ..+..+...++..+.+.+.
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt 163 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADT 163 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 2 2223444 6666799999999986654221 12223 3445556667777765554
No 193
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.99 E-value=1.8e+02 Score=29.06 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=50.3
Q ss_pred HHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHH--cCCcEEecCCCCCChh
Q 012041 344 SSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKS--AGWGVMVSHRSGETED 420 (472)
Q Consensus 344 ~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a--~g~~~~v~~~~~Et~~ 420 (472)
+..+++++..+ ...++=| +.+.+++.++++.+ +|++++|.. ++.+..+++.+.+. ..+++..+. ....
T Consensus 184 ~av~~~r~~~~~~~~I~VE--v~tleea~eA~~~G-aD~I~LDn~---~~e~l~~av~~~~~~~~~i~leAsG---GIt~ 254 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVE--TETLEQVQEALEYG-ADIIMLDNM---PVDLMQQAVQLIRQQNPRVKIEASG---NITL 254 (288)
T ss_pred HHHHHHHHhCCCCCEEEEE--CCCHHHHHHHHHcC-CCEEEECCC---CHHHHHHHHHHHHhcCCCeEEEEEC---CCCH
Confidence 45566666665 2334444 45678888887654 699999855 45556666665553 234443332 2333
Q ss_pred hHHHHHHHhhcCCCcccCCCC
Q 012041 421 NFIADLSVGLASGQIKTGAPC 441 (472)
Q Consensus 421 s~~a~lAva~~~~~i~~g~~~ 441 (472)
..+..+| +.+...+-.|.+.
T Consensus 255 ~ni~~ya-~tGvD~Isvgsl~ 274 (288)
T PRK07428 255 ETIRAVA-ETGVDYISSSAPI 274 (288)
T ss_pred HHHHHHH-HcCCCEEEEchhh
Confidence 3444554 4567777766653
No 194
>PRK08185 hypothetical protein; Provisional
Probab=41.92 E-value=3.3e+02 Score=27.06 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=48.1
Q ss_pred cccCHHHHHHHHHcCCCCEEEeccCCcccHHH--------HHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCC
Q 012041 363 LVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTE--------SIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQ 434 (472)
Q Consensus 363 ~~~~~~~~~~~i~~~a~d~i~ik~~k~GGite--------a~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~ 434 (472)
.+|+++++.++++.-.+|++-+-++.++|+.. .-.+.++.+..++++++.+.++- .+.. ..-|+..+..-
T Consensus 147 ~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~-~~e~-~~~ai~~GI~K 224 (283)
T PRK08185 147 IYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSAN-PDAE-IAESVQLGVGK 224 (283)
T ss_pred cCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCC-CHHH-HHHHHHCCCeE
Confidence 47899999999998779999998888777753 33455566667999855443333 3332 23334445544
Q ss_pred cccC
Q 012041 435 IKTG 438 (472)
Q Consensus 435 i~~g 438 (472)
++++
T Consensus 225 iNi~ 228 (283)
T PRK08185 225 INIS 228 (283)
T ss_pred EEeC
Confidence 5553
No 195
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=41.51 E-value=1.2e+02 Score=30.02 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=47.1
Q ss_pred HHHhhcCCeEE--eCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 012041 348 SLQSSVDIQLV--GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 348 ~L~~~~~~pI~--~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~--~v~~ 413 (472)
.++++.++||+ .|. ..+++.+.+.++.| ++.+++|-+.. -=|..+++++++|++.|+.+ -+||
T Consensus 63 ~~a~~~~VPV~lHLDH--~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~ 132 (276)
T cd00947 63 AAAERASVPVALHLDH--GSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGR 132 (276)
T ss_pred HHHHHCCCCEEEECCC--CCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 34445556664 454 46789999999987 99999998765 23677899999999999887 4455
No 196
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.46 E-value=57 Score=30.90 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=35.7
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
-|++.++++++.+++||++.-- +.+++|++++.+.+.+|.+.+
T Consensus 177 ~d~~~i~~l~~~~~ipvia~GG-i~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 177 PNVEATRELAAAVPIPVIASGG-VSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCHHHHHHHHHhCCCCEEEeCC-CCCHHHHHHHHHcCCccEEEE
Confidence 5789999999998888866553 578999999999887888876
No 197
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=41.42 E-value=1.3e+02 Score=28.39 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCcEEecCCCC------CChhhHHHHHHHhhcCCCcccCCCCCchhH
Q 012041 394 ESIQAALDSKSAGWGVMVSHRSG------ETEDNFIADLSVGLASGQIKTGAPCRSERL 446 (472)
Q Consensus 394 ea~~ia~~A~a~g~~~~v~~~~~------Et~~s~~a~lAva~~~~~i~~g~~~~~e~~ 446 (472)
+..+.++..++.|..-++=|... ......+..+.-.+..+.+-.|+....+.+
T Consensus 147 ~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di 205 (234)
T cd04732 147 SLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDI 205 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHH
Confidence 34455555566665544333211 011223344433334455555555443333
No 198
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=41.30 E-value=2.2e+02 Score=28.77 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEec--cccccccc------------C-cceeecCCCCCCCCCCccCHHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFTK------------D-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~--~a~~~~~~------------~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~ 325 (472)
.-++.++|+++.+.|+. ++.||-=. -++.||.+ | ..|++++. +..||++....-
T Consensus 166 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~----------n~~eAlre~~~D 234 (320)
T cd04823 166 DGRIGAIREALDAEGFT-NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPA----------NSREALREVALD 234 (320)
T ss_pred hhHHHHHHHHHHHCCCC-CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 56788999999999884 56666321 12334421 1 45776532 356676654333
Q ss_pred Hhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 012041 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKS 404 (472)
Q Consensus 326 l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a 404 (472)
+++ .++.++.=-++ -++-.+.+++++.+||++-..+ .-..-++...+.|..|- .+ .+.|++ .--+.
T Consensus 235 i~EGAD~lMVKPal~--YLDIi~~~k~~~~lPvaaYqVS-GEYaMikaAa~~G~~d~-----~~--~~~Esl---~~ikR 301 (320)
T cd04823 235 IAEGADMVMVKPGMP--YLDIIRRVKDEFGVPTFAYQVS-GEYAMLKAAAQNGWLDE-----DK--VMLESL---LAFKR 301 (320)
T ss_pred HHhCCCEEEEcCCch--HHHHHHHHHHhcCCCEEEEEcc-HHHHHHHHHHHcCCCcH-----HH--HHHHHH---HHHHh
Confidence 344 67888875566 3677899999999999887643 12345556666776662 11 233443 33445
Q ss_pred cCCcEEe
Q 012041 405 AGWGVMV 411 (472)
Q Consensus 405 ~g~~~~v 411 (472)
+|-.+++
T Consensus 302 AGAd~Ii 308 (320)
T cd04823 302 AGADGIL 308 (320)
T ss_pred cCCCEEe
Confidence 6766654
No 199
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=41.16 E-value=1.1e+02 Score=30.03 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=63.4
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
|++-.++-++++.+.-+++++--+=|-..+++.+..++. .++.-++--. +.+ .++.+.+. +.--.|++|=++.-
T Consensus 62 qG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~---~DilQIgArn-~rn-~~LL~a~g-~t~kpV~lKrG~~~ 135 (264)
T PRK05198 62 RGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV---VDVLQIPAFL-CRQ-TDLLVAAA-KTGKVVNIKKGQFL 135 (264)
T ss_pred CCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh---CcEEEECchh-cch-HHHHHHHh-ccCCeEEecCCCcC
Confidence 445556777887877777888777777766665555544 4532233332 233 34443332 24568999999999
Q ss_pred cHHHHHHHHHHHHHcC-CcEEecC
Q 012041 391 TVTESIQAALDSKSAG-WGVMVSH 413 (472)
Q Consensus 391 Gitea~~ia~~A~a~g-~~~~v~~ 413 (472)
++.+++-++++..+.| -++++-+
T Consensus 136 t~~e~~~aaeyi~~~Gn~~vilcE 159 (264)
T PRK05198 136 APWDMKNVVDKVREAGNDKIILCE 159 (264)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9999999999999887 4454433
No 200
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=41.16 E-value=3.5e+02 Score=28.04 Aligned_cols=92 Identities=13% Similarity=0.215 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhhCCeeEE----eCCCCcCCHHHHHHH---------HhhcCCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSI----EDPFDQDDWSSWASL---------QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~i----EdP~~~~D~~~~~~L---------~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
+.+++-+++-+.|++++..+| ---+..++|+-..++ ++. |...-.+=|+..+.+.|.+++...-.|
T Consensus 91 ~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~e-GkIr~~GFSfHgs~e~~~~iv~a~~~d 169 (391)
T COG1453 91 DREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAE-GKIRNAGFSFHGSTEVFKEIVDAYPWD 169 (391)
T ss_pred CHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhc-CcEEEeeecCCCCHHHHHHHHhcCCcc
Confidence 677888888888888876433 334444444333333 222 333445556667789999999999999
Q ss_pred EEEeccC------CcccHHHHHHHHHHHHHcCCcEEe
Q 012041 381 GLLLKVN------QIGTVTESIQAALDSKSAGWGVMV 411 (472)
Q Consensus 381 ~i~ik~~------k~GGitea~~ia~~A~a~g~~~~v 411 (472)
++|+-.+ +.| .+..++|.++|++|+|
T Consensus 170 fvqlq~ny~d~~n~~~-----~~~l~~A~~~~~gI~I 201 (391)
T COG1453 170 FVQLQYNYIDQKNQAG-----TEGLKYAASKGLGIFI 201 (391)
T ss_pred eEEeeeeeeccchhcc-----cHHHHHHHhCCCcEEE
Confidence 9998875 334 3566778889988866
No 201
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=40.99 E-value=3e+02 Score=27.97 Aligned_cols=49 Identities=6% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCCCcCCH----HHHHHHHhhcCCeEEeCCcc-ccCHHHHHHHHHcCCCCEEEec
Q 012041 336 DPFDQDDW----SSWASLQSSVDIQLVGDDLL-VTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 336 dP~~~~D~----~~~~~L~~~~~~pI~~dE~~-~~~~~~~~~~i~~~a~d~i~ik 385 (472)
+|-...|+ +..+.|++.+++||+.-+.- ..+.+.++.+.+.| +|+|.+.
T Consensus 157 ~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aG-vd~I~Vs 210 (333)
T TIGR02151 157 QPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAG-VSAIDVA 210 (333)
T ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 44445567 56777888888999875531 13556666665554 7888885
No 202
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=40.93 E-value=1.9e+02 Score=29.22 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEec--ccccccc------------cC-cceeecCCCCCCCCCCccCHHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFT------------KD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~--~a~~~~~------------~~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~ 325 (472)
.-++.++|++++..|+. ++.||-=. -++.||. .| ..|++++. +..||++....-
T Consensus 169 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~----------n~~eAlre~~~D 237 (323)
T PRK09283 169 DGRVGAIREALDEAGFT-DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPA----------NRREALREVALD 237 (323)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999884 66666321 0233441 11 45776632 456777654433
Q ss_pred Hhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 012041 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKS 404 (472)
Q Consensus 326 l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a 404 (472)
+++ .++.++.=-++ -++-.+++++++++||++-..+ .-..-++...+.|..|- .+ .+.|+ ..-.+.
T Consensus 238 ~~EGAD~lMVKPal~--YLDIi~~~k~~~~~PvaaYqVS-GEYaMikaAa~~G~~D~-----~~--~~~Es---l~~~kR 304 (323)
T PRK09283 238 IEEGADMVMVKPALP--YLDIIRRVKDEFNLPVAAYQVS-GEYAMIKAAAQNGWIDE-----ER--VVLES---LLSIKR 304 (323)
T ss_pred HHhCCCEEEEcCCch--HHHHHHHHHhcCCCCEEEEEcc-HHHHHHHHHHHcCCCCH-----HH--HHHHH---HHHHHh
Confidence 444 67888775566 3577899999999999887643 12355566677777662 11 23344 344445
Q ss_pred cCCcEEec
Q 012041 405 AGWGVMVS 412 (472)
Q Consensus 405 ~g~~~~v~ 412 (472)
+|-.+++.
T Consensus 305 AGAd~IiT 312 (323)
T PRK09283 305 AGADGILT 312 (323)
T ss_pred cCCCEEEe
Confidence 66666543
No 203
>PRK10867 signal recognition particle protein; Provisional
Probab=40.23 E-value=1.2e+02 Score=32.07 Aligned_cols=131 Identities=10% Similarity=0.150 Sum_probs=69.7
Q ss_pred CeeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHH----HHHcCCCCEEEeccCC-----cccHHHHHHHH
Q 012041 330 PIVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAE----AIQKKSCNGLLLKVNQ-----IGTVTESIQAA 399 (472)
Q Consensus 330 ~l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~----~i~~~a~d~i~ik~~k-----~GGitea~~ia 399 (472)
.+..+ =|++.+...+.|+.+.++.++|+...+. ..++.++.. .......|++.+|..= ...+.++.++.
T Consensus 131 kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~-~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~ 209 (433)
T PRK10867 131 KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGD-GQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIK 209 (433)
T ss_pred cEEEEEccccchHHHHHHHHHHhhcCCeEEecCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHH
Confidence 34433 4777777777777778888888765432 234555543 3345568888888852 23455556666
Q ss_pred HHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC--CCchhHHHhhHHHHHHHHhC-CccccC
Q 012041 400 LDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP--CRSERLAKYNQLLRIEEELG-NVRYAG 466 (472)
Q Consensus 400 ~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~--~~~e~~~k~n~ll~i~~~l~-~~~~~~ 466 (472)
+......+-.++..+.+. -+++.|-.+.. .+.+.++ ..-+..++..-.+.+...++ +..|.+
T Consensus 210 ~~v~p~evllVlda~~gq----~av~~a~~F~~-~~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig 274 (433)
T PRK10867 210 AAVNPDEILLVVDAMTGQ----DAVNTAKAFNE-ALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIG 274 (433)
T ss_pred HhhCCCeEEEEEecccHH----HHHHHHHHHHh-hCCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEe
Confidence 655544444344443221 12233332221 1111111 33344566667788888877 544543
No 204
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=40.07 E-value=4.4e+02 Score=28.53 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=63.3
Q ss_pred HHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCCh-hh--H
Q 012041 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETE-DN--F 422 (472)
Q Consensus 346 ~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~-~s--~ 422 (472)
.+.|++.+++||.-|-. ++.-++..++.| +|+|| +++ |+ ..-+++.++..+|..+++-|+..+.. .. .
T Consensus 200 V~~l~~~~~~pISIDT~---~~~v~eaAL~aG-AdiIN-sVs--~~--~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~ 270 (499)
T TIGR00284 200 VKTALDALDSPVIADTP---TLDELYEALKAG-ASGVI-MPD--VE--NAVELASEKKLPEDAFVVVPGNQPTNYEELAK 270 (499)
T ss_pred HHHHHhhCCCcEEEeCC---CHHHHHHHHHcC-CCEEE-ECC--cc--chhHHHHHHHHcCCeEEEEcCCCCchHHHHHH
Confidence 34556666789988863 578888888886 78888 553 32 23367788888999988888543332 11 2
Q ss_pred HHHHHHhhcCCCcc--cCCCC-CchhHHHhhHHHHHHHHhCCccccC
Q 012041 423 IADLSVGLASGQIK--TGAPC-RSERLAKYNQLLRIEEELGNVRYAG 466 (472)
Q Consensus 423 ~a~lAva~~~~~i~--~g~~~-~~e~~~k~n~ll~i~~~l~~~~~~~ 466 (472)
..+.+...+-+.+. ||--. ..+-+..+.++-++-+.++.+++.|
T Consensus 271 ~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~~l~~~r~~~~~Pil~G 317 (499)
T TIGR00284 271 AVKKLRTSGYSKVAADPSLSPPLLGLLESIIRFRRASRLLNVPLVFG 317 (499)
T ss_pred HHHHHHHCCCCcEEEeCCCCcchHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 34444544443222 22211 1122223333333334566666665
No 205
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=39.77 E-value=2.9e+02 Score=28.00 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEE---ecccccccc------------cC-cceeecCCCCCCCCCCccCHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGM---DVAASEFFT------------KD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKE 324 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~v---D~~a~~~~~------------~~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~ 324 (472)
.-++.++|+++.+.|+. ++.||- -. ++.||. .| ..|++++. +..||++....
T Consensus 171 DGrV~aIR~aLd~~g~~-~v~ImSYsaKy-aS~fYGPFRdAa~Sap~fgDrktYQmdp~----------N~~EAlre~~~ 238 (324)
T PF00490_consen 171 DGRVGAIREALDEAGFS-DVPIMSYSAKY-ASAFYGPFRDAAGSAPKFGDRKTYQMDPA----------NRREALREAEL 238 (324)
T ss_dssp TTHHHHHHHHHHHTTCT-TSEEEEEEEEB--SSTGHHHHHHHT-HHSSSTSTTTSB-TT-----------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCC-CccEEechHHH-hhhhhHhHHHHhcCCccccCcccccCCCc----------cHHHHHHHhhh
Confidence 45788999999999874 666663 33 244552 12 46776532 46777765443
Q ss_pred HHhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 325 FVRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 325 ~l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
-+++ .++.++.=-++ -++-.+++++++.+|+++-..+ .-..-++...++|..|
T Consensus 239 D~~EGAD~lMVKPal~--YLDIi~~~k~~~~~P~~aYqVS-GEYaMikaAa~~G~~d 292 (324)
T PF00490_consen 239 DIEEGADILMVKPALP--YLDIIRRVKERFDLPVAAYQVS-GEYAMIKAAAQNGWID 292 (324)
T ss_dssp HHHTT-SEEEEESSGG--GHHHHHHHHHHCTS-EEEEETH-HHHHHHHHHHHTTSS-
T ss_pred hHhhCCCEEEeecchh--HHHHHHHHHHhcCCCEEEEEeh-HHHHHHHHHHHCCCcc
Confidence 3444 67888875565 4678899999999999887743 1235566666777766
No 206
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=38.60 E-value=3.5e+02 Score=27.56 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe-cc-CCcccHHH
Q 012041 317 SLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL-KV-NQIGTVTE 394 (472)
Q Consensus 317 eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i-k~-~k~GGite 394 (472)
+++..+..++..-+-..+.+|....-+..+....+..++.+.--+. .+++.+++.++.+ .++|.+ -+ +-.|.+.+
T Consensus 78 ~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~--~d~~~l~~~i~~~-tklv~le~P~NP~~~~~d 154 (366)
T PRK08247 78 AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT--ASLKAIEQAITPN-TKAIFIETPTNPLMQETD 154 (366)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC--CCHHHHHHhcccC-ceEEEEECCCCCCCcHHH
Confidence 3444444555554566788898877667777766677754433332 3678888877653 456554 22 33688899
Q ss_pred HHHHHHHHHHcCCcEEecC
Q 012041 395 SIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 395 a~~ia~~A~a~g~~~~v~~ 413 (472)
..+++++|+++|+.+++-.
T Consensus 155 l~~I~~la~~~g~~lIvD~ 173 (366)
T PRK08247 155 IAAIAKIAKKHGLLLIVDN 173 (366)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 9999999999999887654
No 207
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=38.41 E-value=2.5e+02 Score=26.39 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEE---e-C----Ccccc-CHHHHHHHHHcCCCCEEEe
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLV---G-D----DLLVT-NPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~---~-d----E~~~~-~~~~~~~~i~~~a~d~i~i 384 (472)
+.+++.++ .+.+.+.+...++= ..++..+++++.+.+|++ - | ..+.. ..++++.+.+.+ +|++.+
T Consensus 21 ~~~~~~~~-a~a~~~~G~~~~~~----~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG-ad~I~~ 94 (221)
T PRK01130 21 SPEIMAAM-ALAAVQGGAVGIRA----NGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAG-ADIIAL 94 (221)
T ss_pred CHHHHHHH-HHHHHHCCCeEEEc----CCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcC-CCEEEE
Confidence 45555555 56677888877772 247888999988888886 2 1 22221 235677777766 579998
Q ss_pred ccCCc---ccHHHHHHHHHHHHH-cCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 385 KVNQI---GTVTESIQAALDSKS-AGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 385 k~~k~---GGitea~~ia~~A~a-~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
+.... .+ .+..++++.+++ .++.++++..+.+ . +..+...++.++..
T Consensus 95 d~~~~~~p~~-~~~~~~i~~~~~~~~i~vi~~v~t~e---e--~~~a~~~G~d~i~~ 145 (221)
T PRK01130 95 DATLRPRPDG-ETLAELVKRIKEYPGQLLMADCSTLE---E--GLAAQKLGFDFIGT 145 (221)
T ss_pred eCCCCCCCCC-CCHHHHHHHHHhCCCCeEEEeCCCHH---H--HHHHHHcCCCEEEc
Confidence 87542 11 355677788888 8888876553211 1 23445556666644
No 208
>PRK06801 hypothetical protein; Provisional
Probab=38.04 E-value=1.6e+02 Score=29.25 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=45.1
Q ss_pred HhhcCCeEE--eCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 012041 350 QSSVDIQLV--GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 350 ~~~~~~pI~--~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~v~~ 413 (472)
.++.++||+ .|. ..+.+.+.+.++.| ++.|++|-+..- =+..++++.++|+.+|+.+ -+|+
T Consensus 70 a~~~~vpV~lHlDH--~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 70 AARHDIPVVLNLDH--GLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGA 137 (286)
T ss_pred HHHCCCCEEEECCC--CCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCc
Confidence 344555654 454 45788899999886 799999987765 4667888999999999887 4455
No 209
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=37.88 E-value=1.4e+02 Score=29.77 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=59.7
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
+++-.++-++.+.+.-+++++--+=|=...++.+..++ ..++.=++--+ +.+ .++...+. +.--.|++|=++..
T Consensus 68 rG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae---~~DilQIgAr~-~rq-tdLL~a~~-~tgkpV~lKkGq~~ 141 (290)
T PLN03033 68 RGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGK---VADIIQIPAFL-CRQ-TDLLVAAA-KTGKIINIKKGQFC 141 (290)
T ss_pred CCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHh---hCcEEeeCcHH-HHH-HHHHHHHH-ccCCeEEeCCCCCC
Confidence 34456778888887767788766655555554444444 34422222222 222 33333222 34568999999999
Q ss_pred cHHHHHHHHHHHHHcCC-cEEecC
Q 012041 391 TVTESIQAALDSKSAGW-GVMVSH 413 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~-~~~v~~ 413 (472)
.+.+++.+++...+.|- .+++-+
T Consensus 142 t~~e~~~aaeki~~~GN~~viLcE 165 (290)
T PLN03033 142 APSVMRNSAEKVRLAGNPNVMVCE 165 (290)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEe
Confidence 99999999999888874 344433
No 210
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=37.73 E-value=2.3e+02 Score=30.47 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=87.0
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCCCC--cCCHHHHHHHHhhcC--CeEEeC-CccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD--QDDWSSWASLQSSVD--IQLVGD-DLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP~~--~~D~~~~~~L~~~~~--~pI~~d-E~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
+|..+.-+. ++.-+.++.||=-.|- ++|+...+++.+..+ ++|++- |. ....+.+...++. +|.+.+-.+
T Consensus 172 ltekD~~di--~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt-~~av~nldeI~~~--~DgImIarg 246 (480)
T cd00288 172 LSEKDKADL--RFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIEN-QEGVNNFDEILEA--SDGIMVARG 246 (480)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECC-HHHHHhHHHHHHh--cCEEEECcc
Confidence 455543332 2334567777776764 467777777665543 444332 32 3335566666665 999998876
Q ss_pred Cccc---H----HHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCccc-----CCCCCchhH
Q 012041 388 QIGT---V----TESIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKT-----GAPCRSERL 446 (472)
Q Consensus 388 k~GG---i----tea~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~-----g~~~~~e~~ 446 (472)
..|. . .--.++++.|+++|+++++..++.||.. +=+.|+|-|. ++..+.+ -+-.+-|.+
T Consensus 247 DLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV 326 (480)
T cd00288 247 DLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAV 326 (480)
T ss_pred hhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHH
Confidence 6543 2 2345688899999999998887777743 2367888887 6666654 233456777
Q ss_pred HHhhHHHHHHH
Q 012041 447 AKYNQLLRIEE 457 (472)
Q Consensus 447 ~k~n~ll~i~~ 457 (472)
...++..+-.|
T Consensus 327 ~~m~~I~~~aE 337 (480)
T cd00288 327 KAMARICLEAE 337 (480)
T ss_pred HHHHHHHHHHH
Confidence 77788555333
No 211
>PRK13561 putative diguanylate cyclase; Provisional
Probab=37.66 E-value=5.9e+02 Score=28.03 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhCC----eeEEeCC--CCcCCHHHHHHHHh---hcCCeEEeCCccccCHHHHHHHHH--cCCCCEEEecc
Q 012041 318 LGDLYKEFVRDFP----IVSIEDP--FDQDDWSSWASLQS---SVDIQLVGDDLLVTNPKRIAEAIQ--KKSCNGLLLKV 386 (472)
Q Consensus 318 ai~~~~~~l~~~~----l~~iEdP--~~~~D~~~~~~L~~---~~~~pI~~dE~~~~~~~~~~~~i~--~~a~d~i~ik~ 386 (472)
.++.+.+.+++++ -.+||=+ ...+|.+....+.+ +.|+.|+.|+. -+....+..+-. .-..|++.||-
T Consensus 502 f~~~l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~i~lddf-G~g~ssl~~L~~l~~l~~d~lKiD~ 580 (651)
T PRK13561 502 MVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF-GMGYAGLRQLQHMKSLPIDVLKIDK 580 (651)
T ss_pred HHHHHHHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHCCCEEEEECC-CCCcccHHHHhhcCCCCCcEEEECH
Confidence 3445566666665 2455543 33355555555444 45799999994 555555555433 23589999886
Q ss_pred CCcccH----HHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCc---ccCCCCCch
Q 012041 387 NQIGTV----TESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQI---KTGAPCRSE 444 (472)
Q Consensus 387 ~k~GGi----tea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i---~~g~~~~~e 444 (472)
+-+.++ .=...++.+|+..|+.|+..+ .|+... .+....+++.++ .++-|...+
T Consensus 581 s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg--VE~~~~--~~~l~~~g~d~~QG~~~~~P~~~~ 641 (651)
T PRK13561 581 MFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG--VETEAQ--RDWLLKAGVGIAQGFLFARALPIE 641 (651)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCcEEEec--CCCHHH--HHHHHhcCCCEEeCCcccCCCCHH
Confidence 544333 234557889999999987655 455433 344445555544 355554433
No 212
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=37.52 E-value=4.1e+02 Score=28.95 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=73.1
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeC--CC-CcCCHHHHHHHHhh-cC-CeEEeC------CccccCHHHHHHHHHcCCC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIED--PF-DQDDWSSWASLQSS-VD-IQLVGD------DLLVTNPKRIAEAIQKKSC 379 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEd--P~-~~~D~~~~~~L~~~-~~-~pI~~d------E~~~~~~~~~~~~i~~~a~ 379 (472)
..++.++-+++ .+.|.++++.+||= |. .+.|++.++++.+. +. ..|++= +..+.+...+..+++. ..
T Consensus 18 ~~~s~eeKl~I-a~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~-~~ 95 (526)
T TIGR00977 18 VSFSLEDKIRI-AERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKA-ET 95 (526)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcC-CC
Confidence 45789998877 56689999999997 54 46788888888742 22 333321 1101112334455443 34
Q ss_pred CEEEec-----------c--CCcccHHHHHHHHHHHHHcCCcEEecCC---CC-CChhhH---HHHHHHhhcCCCcccCC
Q 012041 380 NGLLLK-----------V--NQIGTVTESIQAALDSKSAGWGVMVSHR---SG-ETEDNF---IADLSVGLASGQIKTGA 439 (472)
Q Consensus 380 d~i~ik-----------~--~k~GGitea~~ia~~A~a~g~~~~v~~~---~~-Et~~s~---~a~lAva~~~~~i~~g~ 439 (472)
+.+.+- + ++---+..+.+++++|+.+|..+..+.. .+ .+...+ .+..+...++..+.+.+
T Consensus 96 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~D 175 (526)
T TIGR00977 96 PVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCD 175 (526)
T ss_pred CEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEec
Confidence 555542 1 2222344445668899999999755442 11 233344 34444555777776444
Q ss_pred C
Q 012041 440 P 440 (472)
Q Consensus 440 ~ 440 (472)
-
T Consensus 176 T 176 (526)
T TIGR00977 176 T 176 (526)
T ss_pred C
Confidence 3
No 213
>PRK14847 hypothetical protein; Provisional
Probab=37.20 E-value=4.7e+02 Score=26.71 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=59.5
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhc----CCeEEeCCccccCHHHHHHHHHcCC---CC
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSV----DIQLVGDDLLVTNPKRIAEAIQKKS---CN 380 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~----~~pI~~dE~~~~~~~~~~~~i~~~a---~d 380 (472)
-.+|.+|=+++ +++|++.++..||=-+| ++|++..++|.+.. ++.|++=- ....+|+...++... .+
T Consensus 49 v~fs~eeKl~I-A~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~--r~~~~dId~a~e~~~~~~~~ 125 (333)
T PRK14847 49 EPMDGARKLRL-FEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALT--QSRPDLIARTFEALAGSPRA 125 (333)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEe--cCcHHHHHHHHHHhCCCCCC
Confidence 35788888876 77899999999998765 56778888886652 34443321 123577777766532 23
Q ss_pred EEEecc-------------CCcccHHHHHHHHHHHHHcCC
Q 012041 381 GLLLKV-------------NQIGTVTESIQAALDSKSAGW 407 (472)
Q Consensus 381 ~i~ik~-------------~k~GGitea~~ia~~A~a~g~ 407 (472)
.|.+-+ ++---+..+.+.+.+|++++.
T Consensus 126 ~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~ 165 (333)
T PRK14847 126 IVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALAD 165 (333)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 344332 222334556677889999954
No 214
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=37.18 E-value=4.5e+02 Score=26.51 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeC-----CCCcC----C-----HHHHHHHHhhcCCeEEeCCcc-ccCHHHHHHHHHcCC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIED-----PFDQD----D-----WSSWASLQSSVDIQLVGDDLL-VTNPKRIAEAIQKKS 378 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEd-----P~~~~----D-----~~~~~~L~~~~~~pI~~dE~~-~~~~~~~~~~i~~~a 378 (472)
+.++..++ .+.+++.+..+||= |.... + ++-.+++++.+++||..-..- .++..++.+.++...
T Consensus 112 ~~~e~~~~-a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G 190 (334)
T PRK07565 112 SAGGWVDY-ARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAG 190 (334)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcC
Confidence 45566665 45567777777774 33221 1 233477777778898777542 124567777777666
Q ss_pred CCEEEeccCCc--------------ccHH------HHHH-HHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 379 CNGLLLKVNQI--------------GTVT------ESIQ-AALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 379 ~d~i~ik~~k~--------------GGit------ea~~-ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
+|.|.+--... +|++ .+++ +..+.+..++++ ++.....+.....-.|. +++..+.+
T Consensus 191 ~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipI-ig~GGI~s~~Da~e~l~--aGA~~V~v 267 (334)
T PRK07565 191 ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADL-AATTGVHDAEDVIKMLL--AGADVVMI 267 (334)
T ss_pred CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCE-EEECCCCCHHHHHHHHH--cCCCceee
Confidence 88776522110 1111 1223 334445567886 45544455555555554 44555544
Q ss_pred CCC--C-CchhHHHhhH
Q 012041 438 GAP--C-RSERLAKYNQ 451 (472)
Q Consensus 438 g~~--~-~~e~~~k~n~ 451 (472)
+.. . +.+-+.++++
T Consensus 268 ~t~~~~~g~~~~~~i~~ 284 (334)
T PRK07565 268 ASALLRHGPDYIGTILR 284 (334)
T ss_pred ehHHhhhCcHHHHHHHH
Confidence 432 2 2355556666
No 215
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=36.95 E-value=2.2e+02 Score=28.76 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEec--cccccccc-----------C-cceeecCCCCCCCCCCccCHHHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFTK-----------D-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV 326 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~--~a~~~~~~-----------~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l 326 (472)
.-++.++|+++.+.|+. ++.|+-=. -++.||.. | ..|+++.. +..||++....-+
T Consensus 171 DGrV~aIR~aLd~~g~~-~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~----------n~~eAlre~~~D~ 239 (322)
T PRK13384 171 DGQVKAIRQGLDAAGFE-HVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYA----------NGRQALLEALLDE 239 (322)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCC----------CHHHHHHHHHhhH
Confidence 45788999999999884 56665322 12345521 1 45776532 3567766543333
Q ss_pred hh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 327 RD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 327 ~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
++ .++.++.=-++ -++-.+++++++.+|+++-..+ .-..-++...+.|..|
T Consensus 240 ~EGAD~lMVKPal~--YLDIi~~~k~~~~lPvaaYqVS-GEYaMikaAa~~G~~d 291 (322)
T PRK13384 240 AEGADILMVKPGTP--YLDVLSRLRQETHLPLAAYQVG-GEYAMIKFAALAGALD 291 (322)
T ss_pred hhCCCEEEEcCCch--HHHHHHHHHhccCCCEEEEEch-HHHHHHHHHHHcCCcc
Confidence 44 67888875566 3567889999999999887643 1235556667777777
No 216
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=36.93 E-value=4.6e+02 Score=27.60 Aligned_cols=129 Identities=12% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCccCHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhhcCC----eEEeCCccccCHHHHHHHHHcCCCCEE
Q 012041 310 AHVLSAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSSVDI----QLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (472)
Q Consensus 310 n~~~s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~~~~----pI~~dE~~~~~~~~~~~~i~~~a~d~i 382 (472)
+..+|.++-++. .+.|+++++.+||=-++ +.|++..+.+....+. .+.+-.. ....++..+++.+ +|.+
T Consensus 18 g~~~s~e~Ki~I-a~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ea~~~a~-~~~i 93 (409)
T COG0119 18 GVSFSVEEKIRI-AKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALAR--AIKRDIEALLEAG-VDRI 93 (409)
T ss_pred CCcCCHHHHHHH-HHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHH--hHHhhHHHHHhCC-CCEE
Confidence 346789998877 66799999999998776 4677777777753333 2222221 1224666666654 3332
Q ss_pred E-------------eccCCcccHHHHHHHHHHHHHcCCcEEecC-CCCCChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 383 L-------------LKVNQIGTVTESIQAALDSKSAGWGVMVSH-RSGETEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 383 ~-------------ik~~k~GGitea~~ia~~A~a~g~~~~v~~-~~~Et~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
- ++.++.--+.-+.+.+.+|+.+|+.+..+. ....+...+ .+..+...++..+.+++-.+
T Consensus 94 ~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG 170 (409)
T COG0119 94 HIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVG 170 (409)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcC
Confidence 2 223345556667778889999998876322 123444444 34444455577777666544
No 217
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.56 E-value=2.6e+02 Score=27.28 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=56.3
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeC------C----CCcC-CHHHH----HHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIED------P----FDQD-DWSSW----ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEd------P----~~~~-D~~~~----~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
.+.+++++...++++ .+-.+|.= | +.++ +++-+ +.+++.+++||+.|-. +++-++..++.|
T Consensus 20 ~~~~~~~~~a~~~~~-~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~---~~~vi~~al~~G 95 (257)
T TIGR01496 20 LSVDKAVAHAERMLE-EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTY---RAEVARAALEAG 95 (257)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC---CHHHHHHHHHcC
Confidence 477888887666554 34333321 2 2221 11112 3334445899999963 678899999885
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRS 415 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~ 415 (472)
+|+|| .+.|.. .-+++.++..+|.++++-|+.
T Consensus 96 -~~iIN----sis~~~-~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 96 -ADIIN----DVSGGQ-DPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred -CCEEE----ECCCCC-CchhHHHHHHcCCcEEEEeCC
Confidence 67655 222222 346777888999999888854
No 218
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=36.53 E-value=4.2e+02 Score=26.09 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCee--EEeC
Q 012041 259 DNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIV--SIED 336 (472)
Q Consensus 259 ~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~--~iEd 336 (472)
+++|+.+.++.+++.++ |++.+.+-+. . .+.++++++ .+..++.+.. .+=-
T Consensus 52 t~~Er~~~~~~~~~~~~--~~~~viagv~---------~---------------~~~~~ai~~-a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 52 SVEERKQIAEIVAEAAK--GKVTLIAHVG---------S---------------LNLKESQEL-AKHAEELGYDAISAIT 104 (288)
T ss_pred CHHHHHHHHHHHHHHhC--CCCeEEeccC---------C---------------CCHHHHHHH-HHHHHHcCCCEEEEeC
Confidence 35788888887887653 4677776662 1 246778877 5556776533 3344
Q ss_pred CCC--c---CCHHHHHHHHhhc-CCeEEeCCcc-----ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 012041 337 PFD--Q---DDWSSWASLQSSV-DIQLVGDDLL-----VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSA 405 (472)
Q Consensus 337 P~~--~---~D~~~~~~L~~~~-~~pI~~dE~~-----~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~ 405 (472)
|.. + +=++-++.+.+.+ ++||+.-..- .-+++.+.++.+ .-+++-+|-+- |-+....++.+... .
T Consensus 105 P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s~-~d~~~~~~~~~~~~-~ 180 (288)
T cd00954 105 PFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFTA-TDLYDLERIRAASP-E 180 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHHHHHHHhCC-C
Confidence 533 1 2234467778888 6787754321 114677777764 56888899863 44555555443221 1
Q ss_pred CCcEEecC
Q 012041 406 GWGVMVSH 413 (472)
Q Consensus 406 g~~~~v~~ 413 (472)
+..++.|.
T Consensus 181 ~~~v~~G~ 188 (288)
T cd00954 181 DKLVLNGF 188 (288)
T ss_pred CcEEEEec
Confidence 56655444
No 219
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=36.44 E-value=2.1e+02 Score=29.59 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=71.0
Q ss_pred HHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe--ccCCcccHHHHH
Q 012041 319 GDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL--KVNQIGTVTESI 396 (472)
Q Consensus 319 i~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i--k~~k~GGitea~ 396 (472)
+..+..++.+-+-..+.+|....-+..+..+....++.+.--+. .+++++++.++.+ ..+|.+ -.+-.|.+.+..
T Consensus 78 l~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~--~d~e~l~~ai~~~-t~lV~lesP~Nptg~~~di~ 154 (380)
T PRK06176 78 IHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT--SDLSQIKKAIKPN-TKALYLETPSNPLLKITDLA 154 (380)
T ss_pred HHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC--CCHHHHHHhcCcC-ceEEEEECCCCCCceecCHH
Confidence 33334455554556678887766666777777777876553332 3678888877653 555554 234567888999
Q ss_pred HHHHHHHHcCCcEEecCCCCCC----hhhHHHHHHHhhcCCCc
Q 012041 397 QAALDSKSAGWGVMVSHRSGET----EDNFIADLSVGLASGQI 435 (472)
Q Consensus 397 ~ia~~A~a~g~~~~v~~~~~Et----~~s~~a~lAva~~~~~i 435 (472)
+++++|+++|+.+++-...... ....-+|+.+....+++
T Consensus 155 ~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l 197 (380)
T PRK06176 155 QCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYL 197 (380)
T ss_pred HHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceec
Confidence 9999999999998775422111 12233555555555555
No 220
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=36.42 E-value=61 Score=32.60 Aligned_cols=43 Identities=19% Similarity=0.603 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
-+++..+++++.+++||++.-- +++++++.++++...+|.+++
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGg-I~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGD-IFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCC-CCCHHHHHHHHHhhCCCEEEE
Confidence 4788889999999999987664 678999999998888999987
No 221
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=35.37 E-value=4.3e+02 Score=25.88 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHH-HHHHHHHHHHhhCCeeEEe--CCCCcCC
Q 012041 266 LLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQ-SLGDLYKEFVRDFPIVSIE--DPFDQDD 342 (472)
Q Consensus 266 ~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~-eai~~~~~~l~~~~l~~iE--dP~~~~D 342 (472)
.+.+..+.-|- ..|.+.+|+.. .++ |.|.+..++- .....+++. ++++.+.+.+.++=+.-|. -=+.--|
T Consensus 117 ~~~~i~~~fG~-~~IvvsiD~k~---~~~-g~~~V~~~GW--~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~d 189 (253)
T TIGR02129 117 RLKEIVSLVGK-DRLIVDLSCRK---TQD-GRWIVAMNKW--QTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGID 189 (253)
T ss_pred HHHHHHHHhCC-CCEEEEEEEEE---cCC-CcEEEEECCC--cccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCC
Confidence 44555555442 26999999930 001 3333321110 012345555 5554433322111111121 1123348
Q ss_pred HHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc--CCCCEEE
Q 012041 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK--KSCNGLL 383 (472)
Q Consensus 343 ~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~--~a~d~i~ 383 (472)
++.+++|++.+++||++--= +.+++|+.++-+. +..+++.
T Consensus 190 lel~~~l~~~~~ipVIASGG-v~s~eDi~~l~~~~~g~~~aIv 231 (253)
T TIGR02129 190 EELVSKLGEWSPIPITYAGG-AKSIDDLDLVDELSKGKVDLTI 231 (253)
T ss_pred HHHHHHHHhhCCCCEEEECC-CCCHHHHHHHHHhcCCCCcEEe
Confidence 99999999999988854442 5788999987433 4455544
No 222
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=35.16 E-value=2.6e+02 Score=27.34 Aligned_cols=93 Identities=16% Similarity=0.279 Sum_probs=67.6
Q ss_pred cCHHHHHHHHHHHHhhCC---eeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC
Q 012041 313 LSAQSLGDLYKEFVRDFP---IVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~---l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k 388 (472)
.++.+. ++..++++ |..+ |.++=...++-++.+++.+.+||.--+. .-++..+...-.. .+|+|.+=+.-
T Consensus 66 ~dp~~i----a~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDF-iiD~yQI~~Ar~~-GADavLLI~~~ 139 (254)
T COG0134 66 FDPVEI----AKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDF-IIDPYQIYEARAA-GADAVLLIVAA 139 (254)
T ss_pred CCHHHH----HHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccC-CCCHHHHHHHHHc-CcccHHHHHHh
Confidence 456653 33445564 5555 5556678999999999999999988884 5678888776544 47887775554
Q ss_pred cccHHHHHHHHHHHHHcCCcEEec
Q 012041 389 IGTVTESIQAALDSKSAGWGVMVS 412 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~~~v~ 412 (472)
.+ =.+..++.+.|+..|+.+.+-
T Consensus 140 L~-~~~l~el~~~A~~LGm~~LVE 162 (254)
T COG0134 140 LD-DEQLEELVDRAHELGMEVLVE 162 (254)
T ss_pred cC-HHHHHHHHHHHHHcCCeeEEE
Confidence 43 446789999999999998653
No 223
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.89 E-value=3.7e+02 Score=27.32 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=59.5
Q ss_pred HHHHhhCC-eeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccC---HHHHHHHHHcCC-CCEEEeccCCcccHHHHHH
Q 012041 323 KEFVRDFP-IVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTN---PKRIAEAIQKKS-CNGLLLKVNQIGTVTESIQ 397 (472)
Q Consensus 323 ~~~l~~~~-l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~---~~~~~~~i~~~a-~d~i~ik~~k~GGitea~~ 397 (472)
++.+.+++ +.-+-- +.+++...+.+-.+..++ +++--. .++ .+++..+++.+. +|++++|..+ |-...+.+
T Consensus 54 A~~a~~~G~~~~~~k-~~~e~~~~~~r~~~~~~l-~v~~~v-g~~~~~~~~~~~Lv~ag~~~d~i~iD~a~-gh~~~~~e 129 (326)
T PRK05458 54 AEWLAENGYFYIMHR-FDPEARIPFIKDMHEQGL-IASISV-GVKDDEYDFVDQLAAEGLTPEYITIDIAH-GHSDSVIN 129 (326)
T ss_pred HHHHHHcCCEEEEec-CCHHHHHHHHHhcccccc-EEEEEe-cCCHHHHHHHHHHHhcCCCCCEEEEECCC-CchHHHHH
Confidence 45556666 444444 555555555521111123 332221 122 356666777764 7999999999 66666666
Q ss_pred HHHHHH-HcC-CcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCCC
Q 012041 398 AALDSK-SAG-WGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 398 ia~~A~-a~g-~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~~ 442 (472)
+++..+ .+. +.+|.+. .. |.. .+.-+.-+++..++.|.-.+
T Consensus 130 ~I~~ir~~~p~~~vi~g~-V~-t~e--~a~~l~~aGad~i~vg~~~G 172 (326)
T PRK05458 130 MIQHIKKHLPETFVIAGN-VG-TPE--AVRELENAGADATKVGIGPG 172 (326)
T ss_pred HHHHHHhhCCCCeEEEEe-cC-CHH--HHHHHHHcCcCEEEECCCCC
Confidence 555444 443 7776653 11 211 12333446777777665433
No 224
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=34.67 E-value=2.2e+02 Score=27.46 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeC
Q 012041 314 SAQSLGDLYKEFVRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360 (472)
Q Consensus 314 s~~eai~~~~~~l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~d 360 (472)
..++++++.....+. .+..|++-|. +.+.++++.+..+.|++.-
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAEAPDVPLNVN 202 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHhcCCCCEEEE
Confidence 578899985554333 4589998776 7788999999988887654
No 225
>PRK08508 biotin synthase; Provisional
Probab=34.63 E-value=4.5e+02 Score=25.78 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=59.7
Q ss_pred cCHHHHHHHHHHHHhhCC---eeEE--eCCCCcCCHHH----HHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEE
Q 012041 313 LSAQSLGDLYKEFVRDFP---IVSI--EDPFDQDDWSS----WASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~---l~~i--EdP~~~~D~~~----~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i 382 (472)
.++++.++...+ ..+.+ +.++ ..-++..+++- .+.+++.. ++.+++-.- ..+.+.++++.+.| +|.+
T Consensus 40 ~s~eeI~~~a~~-a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G-~~~~e~l~~Lk~aG-ld~~ 116 (279)
T PRK08508 40 KDIEQIVQEAKM-AKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNG-TASVEQLKELKKAG-IFSY 116 (279)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCC-CCCHHHHHHHHHcC-CCEE
Confidence 478888877444 44444 3332 11122334433 34555554 466543322 22567777765554 5666
Q ss_pred Eec----------cCCcccHHHHHHHHHHHHHcCCcE----EecCCCCCChhh
Q 012041 383 LLK----------VNQIGTVTESIQAALDSKSAGWGV----MVSHRSGETEDN 421 (472)
Q Consensus 383 ~ik----------~~k~GGitea~~ia~~A~a~g~~~----~v~~~~~Et~~s 421 (472)
+.+ +.......+.++.++.|++.|+.+ ++|+ +|+...
T Consensus 117 ~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl--GEt~ed 167 (279)
T PRK08508 117 NHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL--GESWED 167 (279)
T ss_pred cccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec--CCCHHH
Confidence 643 334455788888999999999987 5554 677543
No 226
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=34.05 E-value=1.9e+02 Score=29.73 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=43.3
Q ss_pred CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc----------cHHHHHHHHHHHHHcCCcE
Q 012041 355 IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG----------TVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 355 ~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G----------Gitea~~ia~~A~a~g~~~ 409 (472)
+||+.-=-...+.+.+.+.++.+ ++.|++|-+..- =|..+++++++|+++|+.+
T Consensus 76 VPVaLHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 76 IPICLHQDHGNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred CcEEEECCCCCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 56654322356789999999987 799999999775 5888999999999999887
No 227
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=33.82 E-value=5e+02 Score=26.18 Aligned_cols=49 Identities=6% Similarity=0.137 Sum_probs=32.6
Q ss_pred CCCCcCCH----HHHHHHHhhcCCeEEeCCcc-ccCHHHHHHHHHcCCCCEEEec
Q 012041 336 DPFDQDDW----SSWASLQSSVDIQLVGDDLL-VTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 336 dP~~~~D~----~~~~~L~~~~~~pI~~dE~~-~~~~~~~~~~i~~~a~d~i~ik 385 (472)
+|-...|+ +..+.|++.+++||+.-+.- ..+.++++.+.+. .+|+|.+.
T Consensus 156 ~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~-Gvd~I~vs 209 (326)
T cd02811 156 QPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADA-GVKAIDVA 209 (326)
T ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHc-CCCEEEEC
Confidence 44455577 45677888888999886642 2456777666655 48888763
No 228
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.80 E-value=3.2e+02 Score=27.29 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhH
Q 012041 344 SSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNF 422 (472)
Q Consensus 344 ~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~ 422 (472)
+.+++++++.+ .+|.- | +.+.+++.++++.+ +|+|++|=+. +.+.++++.+.++.+-++.+-- +|......
T Consensus 188 ~ai~~~r~~~~~~kIeV-E--v~tl~ea~eal~~g-aDiI~LDnm~---~e~vk~av~~~~~~~~~v~iea-SGGI~~~n 259 (289)
T PRK07896 188 AALRAVRAAAPDLPCEV-E--VDSLEQLDEVLAEG-AELVLLDNFP---VWQTQEAVQRRDARAPTVLLES-SGGLTLDT 259 (289)
T ss_pred HHHHHHHHhCCCCCEEE-E--cCCHHHHHHHHHcC-CCEEEeCCCC---HHHHHHHHHHHhccCCCEEEEE-ECCCCHHH
Confidence 55666666544 34322 1 34567888877665 5888888554 6666666666554443332222 23333333
Q ss_pred HHHHHHhhcCCCcccCCCCC
Q 012041 423 IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 423 ~a~lAva~~~~~i~~g~~~~ 442 (472)
+.+.|- ++..++-.|.+..
T Consensus 260 i~~yA~-tGvD~Is~galt~ 278 (289)
T PRK07896 260 AAAYAE-TGVDYLAVGALTH 278 (289)
T ss_pred HHHHHh-cCCCEEEeChhhc
Confidence 444433 5667777776643
No 229
>PRK00208 thiG thiazole synthase; Reviewed
Probab=33.62 E-value=4.4e+02 Score=25.70 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=64.0
Q ss_pred CccCHHHHHHHHHHHHhh-CCeeEEe-----CCC-CcCCHHHHHHHHhhc---C---CeEEeCCccccCHHHHHHHHHcC
Q 012041 311 HVLSAQSLGDLYKEFVRD-FPIVSIE-----DPF-DQDDWSSWASLQSSV---D---IQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~-~~l~~iE-----dP~-~~~D~~~~~~L~~~~---~---~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
.-.|++||++. +++..+ ++..||- ||- .-.|....-+-.+.+ + +|+|.|+. ...+++.+.
T Consensus 71 G~~ta~eAv~~-a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~-----~~ak~l~~~- 143 (250)
T PRK00208 71 GCRTAEEAVRT-ARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDP-----VLAKRLEEA- 143 (250)
T ss_pred CCCCHHHHHHH-HHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHHHHHHc-
Confidence 45689999976 676666 4555652 331 112333333333333 3 68888874 445555555
Q ss_pred CCCEEEe--cc-CCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCC
Q 012041 378 SCNGLLL--KV-NQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGA 439 (472)
Q Consensus 378 a~d~i~i--k~-~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~ 439 (472)
.|+++.+ .+ +.--|+++--.+..+.+..++++++....+... -+..++-+++.-+..|.
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpe---da~~AmelGAdgVlV~S 205 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPS---DAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHH---HHHHHHHcCCCEEEECh
Confidence 6888866 32 222246554345555555789988776432221 13344445665555443
No 230
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.06 E-value=4.8e+02 Score=25.61 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHH----cCCCCEEEeccCCccc--HH-------HHHHHHHHHHH
Q 012041 338 FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ----KKSCNGLLLKVNQIGT--VT-------ESIQAALDSKS 404 (472)
Q Consensus 338 ~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~----~~a~d~i~ik~~k~GG--it-------ea~~ia~~A~a 404 (472)
..-.+.+-++++ .+++.||..---...+++++...++ .|.-+++. ..+|+ .+ +...+..+-+.
T Consensus 119 ~~~~n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L---~~rG~~t~~~Y~~~~vdl~~i~~lk~~ 194 (266)
T PRK13398 119 RNMQNFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVL---CERGIRTFETYTRNTLDLAAVAVIKEL 194 (266)
T ss_pred ccccCHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEE---EECCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444566777777 4667777665543335666666432 34444443 55544 21 44455555556
Q ss_pred cCCcEEe--cCCCCCCh-hhHHHHHHHhhcCC
Q 012041 405 AGWGVMV--SHRSGETE-DNFIADLSVGLASG 433 (472)
Q Consensus 405 ~g~~~~v--~~~~~Et~-~s~~a~lAva~~~~ 433 (472)
.++++++ +|..+... ....+-.|+++++.
T Consensus 195 ~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~ 226 (266)
T PRK13398 195 SHLPIIVDPSHATGRRELVIPMAKAAIAAGAD 226 (266)
T ss_pred cCCCEEEeCCCcccchhhHHHHHHHHHHcCCC
Confidence 7899988 66554222 23455666677776
No 231
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.98 E-value=1.9e+02 Score=28.46 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHcCCCCEEEeccCCcc-----cHHHHHHHHHHHHHcCCcEEecCCCCCC------hhhHHHHHHHhhcCCCcccC
Q 012041 370 IAEAIQKKSCNGLLLKVNQIG-----TVTESIQAALDSKSAGWGVMVSHRSGET------EDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 370 ~~~~i~~~a~d~i~ik~~k~G-----Gitea~~ia~~A~a~g~~~~v~~~~~Et------~~s~~a~lAva~~~~~i~~g 438 (472)
+.+.++.+ +|.+.+-+.--+ -+.++-++++.|+.+|++++.-..-++. -++.++.+|+=+++.++|..
T Consensus 100 VeeAvrlG-AdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 100 MEDAVRLN-ACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred HHHHHHCC-CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 33444443 666666554322 4667778888999999998763322221 24678888888899998876
Q ss_pred CC
Q 012041 439 AP 440 (472)
Q Consensus 439 ~~ 440 (472)
.+
T Consensus 179 y~ 180 (264)
T PRK08227 179 YV 180 (264)
T ss_pred CC
Confidence 65
No 232
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.79 E-value=2e+02 Score=28.61 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=49.2
Q ss_pred HHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 012041 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 346 ~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~--~v~~ 413 (472)
...+.++.++||+.-=-...+.+.+.+.++.| ++.|++|-+.. -=|..+++++++|+++|+.+ -+||
T Consensus 66 ~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~ 137 (284)
T PRK09195 66 VSAAAKQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGR 137 (284)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 44455566677754322356789999999997 79999998765 23667899999999999776 4566
No 233
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=32.78 E-value=4.6e+02 Score=25.78 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhh-CC-ee--EEe--CC
Q 012041 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD-FP-IV--SIE--DP 337 (472)
Q Consensus 264 l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~-~~-l~--~iE--dP 337 (472)
.+.++++++.-|- ..+.+.+|+-.+ + |.|.+..++- .....+++.+++ .++.+. .+ +. -|. --
T Consensus 122 p~~v~~~~~~~G~-~~IvvsiD~k~~----~-g~~~Va~~GW--~~~t~~~~~e~~---~~~~~~g~~eii~TdI~rDGt 190 (262)
T PLN02446 122 LERLKDLVRLVGK-QRLVLDLSCRKK----D-GRYYVVTDRW--QKFSDLAVDEET---LEFLAAYCDEFLVHGVDVEGK 190 (262)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEEEec----C-CCEEEEECCC--cccCCCCHHHHH---HHHHHhCCCEEEEEEEcCCCc
Confidence 4456677766542 269999999411 1 4343321110 011244566543 332222 22 22 221 12
Q ss_pred CCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 338 FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 338 ~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
+.--|++.+++|++.+.+||++--= +.+.+|+.++.+.+
T Consensus 191 l~G~d~el~~~l~~~~~ipVIASGG-v~sleDi~~L~~~g 229 (262)
T PLN02446 191 RLGIDEELVALLGEHSPIPVTYAGG-VRSLDDLERVKVAG 229 (262)
T ss_pred ccCCCHHHHHHHHhhCCCCEEEECC-CCCHHHHHHHHHcC
Confidence 3445899999999999988864442 57899999998765
No 234
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.65 E-value=3e+02 Score=26.43 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCcEEecCCCC-CC-----hhhHHHHHHHhhcCCCcccCCCCCchhHH
Q 012041 394 ESIQAALDSKSAGWGVMVSHRSG-ET-----EDNFIADLSVGLASGQIKTGAPCRSERLA 447 (472)
Q Consensus 394 ea~~ia~~A~a~g~~~~v~~~~~-Et-----~~s~~a~lAva~~~~~i~~g~~~~~e~~~ 447 (472)
...+.+..+...|+..++-|... ++ .......+.-....+.+-.|+.+..+.+.
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~ 213 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFV 213 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHH
Confidence 34566667777787654444211 11 12234444444456777778776655553
No 235
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=32.10 E-value=3.9e+02 Score=26.95 Aligned_cols=106 Identities=12% Similarity=0.180 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEec--cccccccc------------C-cceeecCCCCCCCCCCccCHHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFTK------------D-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~--~a~~~~~~------------~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~ 325 (472)
.-++.++|+++.+.|+. ++.||-=. -+|.||.+ | ..|++++. +..||++....-
T Consensus 161 DGrV~aIR~aLd~~g~~-~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpa----------n~~eAlre~~~D 229 (314)
T cd00384 161 DGRVAAIREALDEAGFS-DVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPA----------NRREALREVELD 229 (314)
T ss_pred ccHHHHHHHHHHHCCCC-CCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCC----------CHHHHHHHHHhh
Confidence 45788999999999884 66666321 12334421 1 45776532 456777654333
Q ss_pred Hhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCC
Q 012041 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 326 l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d 380 (472)
+++ .++.++-=-++ -++-.+++++++++|+++-..+ .-..-++...++|..|
T Consensus 230 ~~EGAD~lMVKPal~--YLDIi~~~k~~~~~PvaaYqVS-GEYaMikaAa~~G~id 282 (314)
T cd00384 230 IEEGADILMVKPALA--YLDIIRDVRERFDLPVAAYNVS-GEYAMIKAAAKNGWID 282 (314)
T ss_pred HHhCCCEEEEcCCch--HHHHHHHHHHhcCCCEEEEEcc-HHHHHHHHHHHcCCcc
Confidence 444 67888875566 3677899999999999887643 1234555566666665
No 236
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=32.00 E-value=75 Score=29.68 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEE
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i 382 (472)
-|++-.++|.+. ++||+++-. +++|+++++.++.|+..++
T Consensus 132 pD~~lv~~l~~~-~~pvIaEGr-i~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 132 PDFELVRELVQA-DVPVIAEGR-IHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp HHHHHHHHHHHT-TSEEEEESS---SHHHHHHHHHTT-SEEE
T ss_pred CCHHHHHHHHhC-CCcEeecCC-CCCHHHHHHHHhcCCeEEE
Confidence 488999999876 899999986 6889999999999876654
No 237
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.87 E-value=2.1e+02 Score=28.50 Aligned_cols=66 Identities=6% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 012041 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 343 ~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~ 409 (472)
......+.++.++||+.-=-...+.+.+.+.++.+ ++.|++|-+.. -=|..+++++++|+++|+.+
T Consensus 63 ~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 63 VAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASV 131 (284)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 238
>PRK10060 RNase II stability modulator; Provisional
Probab=31.84 E-value=7.6e+02 Score=27.50 Aligned_cols=109 Identities=10% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHHHhhCCe----eEEe--CCCCcCCHHHHHHHHh---hcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc
Q 012041 321 LYKEFVRDFPI----VSIE--DPFDQDDWSSWASLQS---SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391 (472)
Q Consensus 321 ~~~~~l~~~~l----~~iE--dP~~~~D~~~~~~L~~---~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG 391 (472)
.+.+.++++++ ..|| |....++.+....+.+ ..|+.|+.|+. -+....+..+.. --+|++.||-+-+..
T Consensus 512 ~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDdf-Gtg~ssl~~L~~-l~~d~iKiD~sfv~~ 589 (663)
T PRK10060 512 ALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDF-GTGYSSLSQLAR-FPIDAIKLDQSFVRD 589 (663)
T ss_pred HHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHCCCEEEEECC-CCchhhHHHHHh-CCCCEEEECHHHHhc
Confidence 33445555542 3343 2233345555444433 45799999994 666666665544 468999999654433
Q ss_pred H-------HHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCc
Q 012041 392 V-------TESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQI 435 (472)
Q Consensus 392 i-------tea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i 435 (472)
+ .-...++.+|++.|+.++..+ .|+... .+..-.+++.++
T Consensus 590 i~~~~~~~~~v~~ii~~a~~lg~~viAeG--VEt~~q--~~~l~~~G~d~~ 636 (663)
T PRK10060 590 IHKQPVSQSLVRAIVAVAQALNLQVIAEG--VETAKE--DAFLTKNGVNER 636 (663)
T ss_pred cccCcchHHHHHHHHHHHHHCCCcEEEec--CCCHHH--HHHHHHcCCCEE
Confidence 3 335668899999999987655 455433 344455566554
No 239
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=31.84 E-value=2.6e+02 Score=29.04 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=60.9
Q ss_pred HHHHHHHHHHH-----HhhCCeeEEeCCCCcCCHHHHHHHHhhcCCe---EEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 315 AQSLGDLYKEF-----VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQ---LVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 315 ~~eai~~~~~~-----l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~p---I~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..+++..+.+. +.+-+-..+-+|-.+..+..|+.+.+..++. +-.++....+++++.+.++. ..+++.+.-
T Consensus 103 ~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~-~t~lv~i~~ 181 (424)
T PLN02855 103 ATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE-KTKLVATHH 181 (424)
T ss_pred HHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc-CceEEEEeC
Confidence 45565554432 2222344555665555677788887776632 22232122357888888865 355555543
Q ss_pred --CCcccHHHHHHHHHHHHHcCCcEEec
Q 012041 387 --NQIGTVTESIQAALDSKSAGWGVMVS 412 (472)
Q Consensus 387 --~k~GGitea~~ia~~A~a~g~~~~v~ 412 (472)
+..|.+.+..+|+++|+++|+.+++-
T Consensus 182 ~~n~tG~~~~~~~I~~l~~~~g~~vivD 209 (424)
T PLN02855 182 VSNVLGSILPVEDIVHWAHAVGAKVLVD 209 (424)
T ss_pred ccccccccCCHHHHHHHHHHcCCEEEEE
Confidence 45788999999999999999887664
No 240
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=31.71 E-value=7.5e+02 Score=27.41 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=78.4
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeCC-----------CCcCCHHHHHHHHhhcC-CeE---------EeCCccccCHHH-
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIEDP-----------FDQDDWSSWASLQSSVD-IQL---------VGDDLLVTNPKR- 369 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEdP-----------~~~~D~~~~~~L~~~~~-~pI---------~~dE~~~~~~~~- 369 (472)
.++.++.+.. ++.+++.++..||-= +..++|+.++.+++..+ +++ +|=..+ +.+
T Consensus 23 r~~~~d~l~i-a~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~y---pddv 98 (593)
T PRK14040 23 RLRLDDMLPI-AAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHY---ADDV 98 (593)
T ss_pred ccCHHHHHHH-HHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccC---cHHH
Confidence 5678888876 677899999999982 56788999999999876 664 222211 233
Q ss_pred ----HHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE--ecCC-CCCChhhH---HHHHHHhhcCCCcccCC
Q 012041 370 ----IAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVM--VSHR-SGETEDNF---IADLSVGLASGQIKTGA 439 (472)
Q Consensus 370 ----~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~--v~~~-~~Et~~s~---~a~lAva~~~~~i~~g~ 439 (472)
++... ...+|++.|-. .+.=+..+...+++|+++|..+. ++.+ +.+-.... .+.-+...++..+.+-+
T Consensus 99 v~~~v~~a~-~~Gid~~rifd-~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~D 176 (593)
T PRK14040 99 VERFVERAV-KNGMDVFRVFD-AMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKD 176 (593)
T ss_pred HHHHHHHHH-hcCCCEEEEee-eCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECC
Confidence 33333 33478887753 22235788889999999998642 2221 12222333 34445566788776555
Q ss_pred CCC
Q 012041 440 PCR 442 (472)
Q Consensus 440 ~~~ 442 (472)
..+
T Consensus 177 t~G 179 (593)
T PRK14040 177 MAG 179 (593)
T ss_pred CCC
Confidence 533
No 241
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=31.70 E-value=2.2e+02 Score=29.15 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHHHcCCCCEEEeccCCcc-----cHHHHHHHHHHHHHcCCcEEecCC-CC-----CC-------hhhHHHHHHHhhc
Q 012041 370 IAEAIQKKSCNGLLLKVNQIG-----TVTESIQAALDSKSAGWGVMVSHR-SG-----ET-------EDNFIADLSVGLA 431 (472)
Q Consensus 370 ~~~~i~~~a~d~i~ik~~k~G-----Gitea~~ia~~A~a~g~~~~v~~~-~~-----Et-------~~s~~a~lAva~~ 431 (472)
+.++++.+ +|.|..-+.--+ -+.++.+++..|+.+|+++++-.. -+ +. -++.++++|+-++
T Consensus 152 VedAlrLG-AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 152 VEDALRLG-AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred HHHHHHCC-CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 44455554 566665554322 466778888999999999876221 11 11 2567999999999
Q ss_pred CCCcccCCCCCchh
Q 012041 432 SGQIKTGAPCRSER 445 (472)
Q Consensus 432 ~~~i~~g~~~~~e~ 445 (472)
+.++|.-.+...+.
T Consensus 231 ADIVKv~yp~~~~~ 244 (348)
T PRK09250 231 ADIIKQKLPTNNGG 244 (348)
T ss_pred CCEEEecCCCChhh
Confidence 99999777743333
No 242
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.23 E-value=2.7e+02 Score=26.94 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHH
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L 349 (472)
+.++..++ .+.+++.+|.|+--|++.++++-+.++
T Consensus 54 ~~e~~~~L-~~~~~~~gi~f~stpfd~~s~d~l~~~ 88 (241)
T PF03102_consen 54 SEEQHKEL-FEYCKELGIDFFSTPFDEESVDFLEEL 88 (241)
T ss_dssp -HHHHHHH-HHHHHHTT-EEEEEE-SHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHcCCEEEECCCCHHHHHHHHHc
Confidence 45555544 677899999999999987766666544
No 243
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=31.18 E-value=1.3e+02 Score=29.24 Aligned_cols=84 Identities=12% Similarity=0.290 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhh-cCCCcccCC----CCC
Q 012041 368 KRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGL-ASGQIKTGA----PCR 442 (472)
Q Consensus 368 ~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~-~~~~i~~g~----~~~ 442 (472)
+-++..++.+.+|.+.+.=.+.|+-.+.-++....+...+++.+|+....-+.....++|=++ -...+|-|+ +..
T Consensus 167 ~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD 246 (263)
T COG0434 167 EAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVD 246 (263)
T ss_pred HHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccC
Confidence 455667899999999999999999999999999999999999888854333444555555444 335567777 666
Q ss_pred chhHHHhhH
Q 012041 443 SERLAKYNQ 451 (472)
Q Consensus 443 ~e~~~k~n~ 451 (472)
.+|..++-+
T Consensus 247 ~~Rv~~~v~ 255 (263)
T COG0434 247 LERVRRFVE 255 (263)
T ss_pred HHHHHHHHH
Confidence 677655443
No 244
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.91 E-value=5.5e+02 Score=25.63 Aligned_cols=120 Identities=10% Similarity=0.052 Sum_probs=73.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCC--eeEEeC
Q 012041 259 DNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIED 336 (472)
Q Consensus 259 ~~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~--l~~iEd 336 (472)
+++|+.+.++.+++.++ |++.+.+-+.+ .+.++++++ .+..++.+ -..+--
T Consensus 59 t~eEr~~v~~~~~~~~~--grvpvi~Gv~~------------------------~~t~~ai~~-a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 59 TWEEKQAFVATVVETVA--GRVPVFVGATT------------------------LNTRDTIAR-TRALLDLGADGTMLGR 111 (309)
T ss_pred CHHHHHHHHHHHHHHhC--CCCCEEEEecc------------------------CCHHHHHHH-HHHHHHhCCCEEEECC
Confidence 35788888888887763 57777776631 246788877 55567766 345566
Q ss_pred CC--Cc---CCHHHHHHHHhhc-CCeEEeCCcc-----ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHc
Q 012041 337 PF--DQ---DDWSSWASLQSSV-DIQLVGDDLL-----VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSA 405 (472)
Q Consensus 337 P~--~~---~D~~~~~~L~~~~-~~pI~~dE~~-----~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~ 405 (472)
|. ++ +-++-++.+.+.+ ++||+.-+.- --+++-+.++.+ .-+++-+|-+- .+....++.+... -
T Consensus 112 P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~--~pnivgiKdss--d~~~~~~~i~~~~-~ 186 (309)
T cd00952 112 PMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ--IPQVVAAKYLG--DIGALLSDLAAVK-G 186 (309)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc--CCCEEEEEecC--ChHHHHHHHHHcC-C
Confidence 63 22 2235567888888 5888765421 113566777753 46888888874 5666555443322 2
Q ss_pred CCcEE
Q 012041 406 GWGVM 410 (472)
Q Consensus 406 g~~~~ 410 (472)
++.+.
T Consensus 187 ~~~v~ 191 (309)
T cd00952 187 RMRLL 191 (309)
T ss_pred CeEEe
Confidence 45543
No 245
>PRK08960 hypothetical protein; Provisional
Probab=30.72 E-value=1.9e+02 Score=29.62 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=57.1
Q ss_pred HHHHHHHHHHH-hhCCeeEEeCCCCcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-ccc-
Q 012041 316 QSLGDLYKEFV-RDFPIVSIEDPFDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ-IGT- 391 (472)
Q Consensus 316 ~eai~~~~~~l-~~~~l~~iEdP~~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k-~GG- 391 (472)
.+++..+...+ ++-+-..+++|..+.....+....... .+|+-.+..+.-+++++.+.++.+..-++...++. .|.
T Consensus 102 ~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~ 181 (387)
T PRK08960 102 SGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTL 181 (387)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcC
Confidence 45665544444 444577899998876655444332221 13431121122357888887776655555555543 444
Q ss_pred --HHHHHHHHHHHHHcCCcEEecC
Q 012041 392 --VTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 392 --itea~~ia~~A~a~g~~~~v~~ 413 (472)
..+..+++++|+++|+.+++-.
T Consensus 182 ~~~~~~~~l~~~~~~~~~~li~De 205 (387)
T PRK08960 182 LSRDELAALSQALRARGGHLVVDE 205 (387)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEc
Confidence 3467788889999998876543
No 246
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.72 E-value=7e+02 Score=26.76 Aligned_cols=137 Identities=10% Similarity=0.023 Sum_probs=76.2
Q ss_pred cCHHHHHHHHHHHHhhCCee--EEeCCCCcCCHHHHHHH----Hhh--cCCeEEe----CCccccCHHHHHHHHHcCCCC
Q 012041 313 LSAQSLGDLYKEFVRDFPIV--SIEDPFDQDDWSSWASL----QSS--VDIQLVG----DDLLVTNPKRIAEAIQKKSCN 380 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~--~iEdP~~~~D~~~~~~L----~~~--~~~pI~~----dE~~~~~~~~~~~~i~~~a~d 380 (472)
.+++..++.+..+.+++++. +|.|...--+..-+.+| .++ +++.... +.. ..+ .++.+++.+-.++
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d-~ell~~l~~aG~~ 299 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD-ADILHLYRRAGLV 299 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC-HHHHHHHHHhCCc
Confidence 47888888877766667643 44443222233333333 332 3333322 221 223 3444444444456
Q ss_pred EEEecc-----------CCcccHHHHHHHHHHHHHcCCcE----EecCCCCCChhh--HHHHHHHhhcCCCcccCCCCCc
Q 012041 381 GLLLKV-----------NQIGTVTESIQAALDSKSAGWGV----MVSHRSGETEDN--FIADLSVGLASGQIKTGAPCRS 443 (472)
Q Consensus 381 ~i~ik~-----------~k~GGitea~~ia~~A~a~g~~~----~v~~~~~Et~~s--~~a~lAva~~~~~i~~g~~~~~ 443 (472)
.+.+-+ .|-.+..+..+.++.++++|+.+ |+|- .+||..+ ...+++..+...++.+..+...
T Consensus 300 ~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~-P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~ 378 (497)
T TIGR02026 300 HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF-ENETDETFEETYRQLLDWDPDQANWLMYTPW 378 (497)
T ss_pred EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC-CCCCHHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 666533 46677889999999999999965 3333 4677544 3567777777776655444333
Q ss_pred hhHHHhhHH
Q 012041 444 ERLAKYNQL 452 (472)
Q Consensus 444 e~~~k~n~l 452 (472)
....-|+++
T Consensus 379 PGT~l~~~~ 387 (497)
T TIGR02026 379 PFTSLFGEL 387 (497)
T ss_pred CCcHHHHHH
Confidence 333345444
No 247
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.71 E-value=1.8e+02 Score=28.96 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=48.4
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeCCC---------CcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEE
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIEDPF---------DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEdP~---------~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i 382 (472)
..+++++.+|+.+ .++.++-=-+ +.-|++.++++++.+++|++.--.+-...+++++.++.| +.=+
T Consensus 152 ~T~pe~a~~Fv~~----TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~G-i~Ki 226 (283)
T PRK07998 152 KTEPEKVKDFVER----TGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYK-VAKV 226 (283)
T ss_pred cCCHHHHHHHHHH----hCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcC-CcEE
Confidence 4578888777443 2333333222 667899999999999999876655566679999999887 4445
Q ss_pred Eecc
Q 012041 383 LLKV 386 (472)
Q Consensus 383 ~ik~ 386 (472)
|+..
T Consensus 227 Ni~T 230 (283)
T PRK07998 227 NIAS 230 (283)
T ss_pred EECH
Confidence 5543
No 248
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=30.38 E-value=4.5e+02 Score=27.37 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHHHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc------------H---HHHHHHHHHHHHc--
Q 012041 344 SSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT------------V---TESIQAALDSKSA-- 405 (472)
Q Consensus 344 ~~~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG------------i---tea~~ia~~A~a~-- 405 (472)
+-.++|++..+ .||..-+....++.++.+.++.+.+|+|.++=.--|+ + ....++.+.+...
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~ 282 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGL 282 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCC
Confidence 44577788887 8888777533367899999988889999987654332 2 2223333444433
Q ss_pred --CCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 406 --GWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 406 --g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
.++++... -.-++... --|+++++..+..|.+
T Consensus 283 ~~~i~viasG-GI~~g~Dv--~kalaLGAd~V~ig~~ 316 (392)
T cd02808 283 RDRVSLIASG-GLRTGADV--AKALALGADAVGIGTA 316 (392)
T ss_pred CCCCeEEEEC-CCCCHHHH--HHHHHcCCCeeeechH
Confidence 46765543 22333333 3344556766665543
No 249
>PTZ00300 pyruvate kinase; Provisional
Probab=30.12 E-value=3.6e+02 Score=28.76 Aligned_cols=130 Identities=10% Similarity=0.084 Sum_probs=79.9
Q ss_pred HhhCCeeEEeCCCCc--CCHHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc---H----HH
Q 012041 326 VRDFPIVSIEDPFDQ--DDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT---V----TE 394 (472)
Q Consensus 326 l~~~~l~~iEdP~~~--~D~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG---i----te 394 (472)
.-+.++.||==||-. +|....+++....+ ++|++-=......+++...+ ..+|++.+-.+..|- + .-
T Consensus 156 ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~--~~~DgImVaRGDLgvei~~e~vp~~ 233 (454)
T PTZ00300 156 GVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII--EESDGIMVARGDLGVEIPAEKVVVA 233 (454)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH--HhCCEEEEecchhhhhcChHHHHHH
Confidence 335788888888753 44444444443322 44544311123345555555 579999987765542 2 23
Q ss_pred HHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCccc-----CCCCCchhHHHhhHHHH-HHH
Q 012041 395 SIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKT-----GAPCRSERLAKYNQLLR-IEE 457 (472)
Q Consensus 395 a~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~-----g~~~~~e~~~k~n~ll~-i~~ 457 (472)
-.++++.|+++|.++++..++.||.. +=..|+|-|+ ++..+.+ -+-.+-|.+...++..+ .|.
T Consensus 234 Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~ 311 (454)
T PTZ00300 234 QKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQS 311 (454)
T ss_pred HHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHh
Confidence 45688899999999999888887743 2367887776 6666653 23345577777777443 444
No 250
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=30.05 E-value=85 Score=32.97 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHhh--CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHc-CCCCEEEeccCCcc
Q 012041 314 SAQSLGDLYKEFVRD--FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK-KSCNGLLLKVNQIG 390 (472)
Q Consensus 314 s~~eai~~~~~~l~~--~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~-~a~d~i~ik~~k~G 390 (472)
-..||+-+. ....+ -+-.++=+-+++.-++-++.-.+.+++.|.-++. ....+++.. +. +.+-++.=-++-.|
T Consensus 148 AaAEAm~ma-~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~--~d~~~l~~~-~~~~~~gv~vQyP~~~G 223 (450)
T COG0403 148 AAAEAMLMA-KRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA--DDLDDLESA-DDGDVFGVLVQYPNTFG 223 (450)
T ss_pred HHHHHHHHH-HHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc--chhhhhhhc-cccCeEEEEEecCCCCC
Confidence 356777664 44555 4677788888888888888777788888877763 244444444 22 22334444567777
Q ss_pred -cHHHHHHHHHHHHHcCCcEEecCCCC-----CChhhHHHHHHHhhcCCCc---ccCCC
Q 012041 391 -TVTESIQAALDSKSAGWGVMVSHRSG-----ETEDNFIADLSVGLASGQI---KTGAP 440 (472)
Q Consensus 391 -Gitea~~ia~~A~a~g~~~~v~~~~~-----Et~~s~~a~lAva~~~~~i---~~g~~ 440 (472)
-+.+..++.+.++++|.-++++.... ...-.+-+|+++|.+..|= .+|+|
T Consensus 224 ~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGP 282 (450)
T COG0403 224 IVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGP 282 (450)
T ss_pred ccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCc
Confidence 66779999999999998887766431 2233456888888765542 35665
No 251
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=29.68 E-value=1.8e+02 Score=29.04 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=48.5
Q ss_pred HHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 012041 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 345 ~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~v~~ 413 (472)
..+.++++.++||+.-=-...+.+.+++.++.+ ++.|++|-+..- =|..+++++++|+++|+.+ -+|+
T Consensus 64 ~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~ 136 (287)
T PF01116_consen 64 MVKAAAEEASVPVALHLDHGKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGH 136 (287)
T ss_dssp HHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESB
T ss_pred HHHHHHHHcCCCEEeecccCCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeee
Confidence 356667777888864322356789999999985 799999998652 3677899999999999887 3455
No 252
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=29.57 E-value=3e+02 Score=27.71 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=52.9
Q ss_pred eeEEeCCCCcCCHHHHHHHHhhcCC---eEEeCCccccCHHHHHHHHHcCCCCEEEeccC--CcccHHHHHHHHHHHHHc
Q 012041 331 IVSIEDPFDQDDWSSWASLQSSVDI---QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN--QIGTVTESIQAALDSKSA 405 (472)
Q Consensus 331 l~~iEdP~~~~D~~~~~~L~~~~~~---pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~--k~GGitea~~ia~~A~a~ 405 (472)
-..+.+|-.+..+..+..+.+..+. .|-.++...-+++++++.+.. ..+.+.+.-. -.|-+.+..+++++|+++
T Consensus 90 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~ 168 (373)
T cd06453 90 EIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVKEIGEIAHEA 168 (373)
T ss_pred EEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHHHHHHHHHHc
Confidence 4556667666655666666655551 222233233468999988876 4566665432 367777889999999999
Q ss_pred CCcEEec
Q 012041 406 GWGVMVS 412 (472)
Q Consensus 406 g~~~~v~ 412 (472)
|+.+++-
T Consensus 169 ~~~li~D 175 (373)
T cd06453 169 GVPVLVD 175 (373)
T ss_pred CCEEEEE
Confidence 9888664
No 253
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.35 E-value=1.5e+02 Score=29.51 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=53.1
Q ss_pred HHHhhCCeeEEeCCCCcCCHHHHHHHHhh--cC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHH
Q 012041 324 EFVRDFPIVSIEDPFDQDDWSSWASLQSS--VD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAAL 400 (472)
Q Consensus 324 ~~l~~~~l~~iEdP~~~~D~~~~~~L~~~--~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~ 400 (472)
+..++|++. ..+..|.+|-+. .+ +-|+.-.. ...+-+.++++.| .+++.=||.-. ++.++.++++
T Consensus 45 ~~a~~~~~~--------~~~~~~~~ll~~~~iD~V~Iatp~~--~H~e~~~~AL~aG-khVl~EKPla~-t~~ea~~l~~ 112 (342)
T COG0673 45 AFAEEFGIA--------KAYTDLEELLADPDIDAVYIATPNA--LHAELALAALEAG-KHVLCEKPLAL-TLEEAEELVE 112 (342)
T ss_pred HHHHHcCCC--------cccCCHHHHhcCCCCCEEEEcCCCh--hhHHHHHHHHhcC-CEEEEcCCCCC-CHHHHHHHHH
Confidence 344567764 222334444433 34 45554442 2456666777776 47777787665 6999999999
Q ss_pred HHHHcCCcEEecCCC
Q 012041 401 DSKSAGWGVMVSHRS 415 (472)
Q Consensus 401 ~A~a~g~~~~v~~~~ 415 (472)
+|+++|+.++++++.
T Consensus 113 ~a~~~~~~l~v~~~~ 127 (342)
T COG0673 113 LARKAGVKLMVGFNR 127 (342)
T ss_pred HHHHcCCceeeehhh
Confidence 999999999999964
No 254
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=29.03 E-value=2.7e+02 Score=25.41 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcC
Q 012041 365 TNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAG 406 (472)
Q Consensus 365 ~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g 406 (472)
.+.+++.++++.+ +|+|++|-+.. .+.+++++..+..+
T Consensus 88 ~~~ee~~ea~~~g-~d~I~lD~~~~---~~~~~~v~~l~~~~ 125 (169)
T PF01729_consen 88 ENLEEAEEALEAG-ADIIMLDNMSP---EDLKEAVEELRELN 125 (169)
T ss_dssp SSHHHHHHHHHTT--SEEEEES-CH---HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhC-CCEEEecCcCH---HHHHHHHHHHhhcC
Confidence 3567777777765 88888887744 55555555444444
No 255
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=28.54 E-value=2.7e+02 Score=27.75 Aligned_cols=68 Identities=6% Similarity=-0.006 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 012041 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 345 ~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~v~~ 413 (472)
....+.++.++||+.-=-...+.+.+.+.++.| ++.|++|-+..- =|..+++++++|+++|+.+ -+||
T Consensus 63 ~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~ 135 (282)
T TIGR01858 63 LCSAASTTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGR 135 (282)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 344555566677754322356789999999996 799999987652 3566889999999999887 4455
No 256
>PRK13753 dihydropteroate synthase; Provisional
Probab=28.47 E-value=4.3e+02 Score=26.24 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=57.0
Q ss_pred ccCHHHHHHHHHHHHhh-CCeeEE--e------CCCCcC-CHH----HHHHHHhhcCCeEEeCCccccCHHHHHHHHHcC
Q 012041 312 VLSAQSLGDLYKEFVRD-FPIVSI--E------DPFDQD-DWS----SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~-~~l~~i--E------dP~~~~-D~~----~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~ 377 (472)
.++.+++++...+++++ .++.=| | +|++++ ++. -.+.|++. ++||.-|-. +++-++..++.|
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISIDT~---~~~va~~al~aG 96 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MHRVSIDSF---QPETQRYALKRG 96 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CCcEEEECC---CHHHHHHHHHcC
Confidence 34778888887776664 222211 1 223222 222 23344432 578888862 578888889887
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCC
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRS 415 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~ 415 (472)
+|+|| |+ .|.+ --+++..+..++.++++-|+.
T Consensus 97 -adiIN-DV---sg~~-d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 97 -VGYLN-DI---QGFP-DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred -CCEEE-eC---CCCC-chHHHHHHHHcCCCEEEEecC
Confidence 68754 34 3344 446677888899999999964
No 257
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=28.40 E-value=4.3e+02 Score=27.04 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=68.8
Q ss_pred ccCHHHHHHHHHHHHhhCC---eeEE-eCCCCcCCHHHHHHHHhh-cCCeEEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 312 VLSAQSLGDLYKEFVRDFP---IVSI-EDPFDQDDWSSWASLQSS-VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~---l~~i-EdP~~~~D~~~~~~L~~~-~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
.+++.+..+. .++.+ |.-+ |+.+=..+++.++++|+. +.+||.--|. +-+++++.+.-..| +|+|.+=+
T Consensus 138 ~~dp~~iA~~----Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDF-IID~yQI~eAr~~G-ADAVLLIa 211 (338)
T PLN02460 138 NFDPVEIAQA----YEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEF-IVDAWQIYYARSKG-ADAILLIA 211 (338)
T ss_pred CCCHHHHHHH----HHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccc-cCCHHHHHHHHHcC-CCcHHHHH
Confidence 3567665443 34444 5544 666777899999999998 8999999984 66788888765554 68888766
Q ss_pred CCcccHHHHHHHHHHHHHcCCcEEec
Q 012041 387 NQIGTVTESIQAALDSKSAGWGVMVS 412 (472)
Q Consensus 387 ~k~GGitea~~ia~~A~a~g~~~~v~ 412 (472)
.-.+ =.+.....++|+..|+.+.+-
T Consensus 212 aiL~-~~~L~~l~~~A~~LGme~LVE 236 (338)
T PLN02460 212 AVLP-DLDIKYMLKICKSLGMAALIE 236 (338)
T ss_pred HhCC-HHHHHHHHHHHHHcCCeEEEE
Confidence 5554 346888999999999998663
No 258
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=28.32 E-value=1.9e+02 Score=30.32 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHh---hCCeeEEeCCCC-cCCHHHHHHHHhhcC-----CeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 315 AQSLGDLYKEFVR---DFPIVSIEDPFD-QDDWSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 315 ~~eai~~~~~~l~---~~~l~~iEdP~~-~~D~~~~~~L~~~~~-----~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
..+++..+...+. +-+-.-|--++. +.++.-|.+++++.+ +|+- ++ ..-..+++.+++.. ....+.+.
T Consensus 93 tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~-g~~~~~~~~~~i~~-~Tklvais 169 (405)
T COG0520 93 TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DD-GLLDLDALEKLITP-KTKLVALS 169 (405)
T ss_pred hhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CC-CCcCHHHHHHhcCC-CceEEEEE
Confidence 4566666555442 222222223332 468899999999876 3433 34 23456777775543 35555555
Q ss_pred c--CCcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 386 V--NQIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 386 ~--~k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
- +..|.+++..+|+++|+++|..+++-.
T Consensus 170 ~vSn~tG~~~pv~~I~~la~~~ga~v~VDa 199 (405)
T COG0520 170 HVSNVTGTVNPVKEIAELAHEHGALVLVDA 199 (405)
T ss_pred CccccccccchHHHHHHHHHHcCCEEEEEC
Confidence 4 678999999999999999998876633
No 259
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.26 E-value=2.3e+02 Score=28.19 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=54.6
Q ss_pred CccCHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 311 ~~~s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
+++-.++-++++.+.-+++++--+=|=...++.+..+ +..++.=++--+ +.+ .++...+.+ .--.|++|=++.-
T Consensus 68 qG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~a---e~vDilQIgAr~-~rn-tdLL~a~~~-t~kpV~lKrGqf~ 141 (281)
T PRK12457 68 RGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVA---EVADVLQVPAFL-ARQ-TDLVVAIAK-TGKPVNIKKPQFM 141 (281)
T ss_pred CCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHh---hhCeEEeeCchh-hch-HHHHHHHhc-cCCeEEecCCCcC
Confidence 3455677788877777778876555554444444444 344532223322 233 344433322 3468899988888
Q ss_pred cHHHHHHHHHHHHHcC
Q 012041 391 TVTESIQAALDSKSAG 406 (472)
Q Consensus 391 Gitea~~ia~~A~a~g 406 (472)
...+++.++++..+.|
T Consensus 142 s~~e~~~aae~i~~~G 157 (281)
T PRK12457 142 SPTQMKHVVSKCREAG 157 (281)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888888887776
No 260
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=27.97 E-value=2.1e+02 Score=26.99 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=48.6
Q ss_pred CHHHHHHHHhh-cCCeEEeCCccccCHHHHHHHHHcC-CCCEEEeccCC-----ccc----HHHHHHHHHHHHHcCCcEE
Q 012041 342 DWSSWASLQSS-VDIQLVGDDLLVTNPKRIAEAIQKK-SCNGLLLKVNQ-----IGT----VTESIQAALDSKSAGWGVM 410 (472)
Q Consensus 342 D~~~~~~L~~~-~~~pI~~dE~~~~~~~~~~~~i~~~-a~d~i~ik~~k-----~GG----itea~~ia~~A~a~g~~~~ 410 (472)
+.+..+++... ....+++-. ...+++.+.++.+.- ..=++.+|+-. -|. -.+..+.+...+..|..-+
T Consensus 85 ~~ed~~~~~~~Ga~~vilg~~-~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~i 163 (233)
T PRK00748 85 SLETVEALLDAGVSRVIIGTA-AVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAI 163 (233)
T ss_pred CHHHHHHHHHcCCCEEEECch-HHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEE
Confidence 44555554442 112334444 355666666655541 11123444310 111 1123566777777777744
Q ss_pred ecCCCC------CChhhHHHHHHHhhcCCCcccCCCCCchhH
Q 012041 411 VSHRSG------ETEDNFIADLSVGLASGQIKTGAPCRSERL 446 (472)
Q Consensus 411 v~~~~~------Et~~s~~a~lAva~~~~~i~~g~~~~~e~~ 446 (472)
+.|... +........+.-.+..+.+-.|+....+.+
T Consensus 164 i~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di 205 (233)
T PRK00748 164 IYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDI 205 (233)
T ss_pred EEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHH
Confidence 445211 112334455554455667777777654444
No 261
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=27.64 E-value=5.9e+02 Score=28.84 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=69.3
Q ss_pred cCHHHHHHHHHHHHhhCC---eeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC
Q 012041 313 LSAQSLGDLYKEFVRDFP---IVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~---l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k 388 (472)
.++.+..+. .++.+ |..+ |..+=..+++.++++++.+.+||.--|. +-++.++.+.-..+ +|+|.+=+.-
T Consensus 70 ~d~~~~a~~----y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDF-Iid~~QI~ea~~~G-ADavLLI~~~ 143 (695)
T PRK13802 70 PDPAALARE----YEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDF-IVTDYQIWEARAHG-ADLVLLIVAA 143 (695)
T ss_pred CCHHHHHHH----HHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccc-cCCHHHHHHHHHcC-CCEeehhHhh
Confidence 466655433 34443 5555 5556678999999999999999998884 66788888776554 7888886665
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecC
Q 012041 389 IGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
.+ -.+..++.++|+..|+.+.+-.
T Consensus 144 L~-~~~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 144 LD-DAQLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred cC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 54 4478899999999999987643
No 262
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=27.62 E-value=5.2e+02 Score=24.61 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCeeEEe--CCCCcCC
Q 012041 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE--DPFDQDD 342 (472)
Q Consensus 265 ~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~~iE--dP~~~~D 342 (472)
+.++++++..|- ..+-+.+|+.. +.... .....++.++++.+.+.+..+=+.=+. -....-|
T Consensus 114 ~~~~~~~~~~~~-~~iivslD~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~ 177 (233)
T cd04723 114 DDDEDRLAALGE-QRLVLSLDFRG-------GQLLK--------PTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPD 177 (233)
T ss_pred hHHHHHHHhcCC-CCeEEEEeccC-------Ceecc--------ccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcC
Confidence 455677766541 16889999931 21110 123457888777665432111111111 1123357
Q ss_pred HHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEE
Q 012041 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLL 383 (472)
Q Consensus 343 ~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ 383 (472)
++.++++.+.+.+|+...-- +.+++|+.++++.++-.++.
T Consensus 178 ~~~~~~i~~~~~ipvi~~GG-i~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 178 LELLERLAARADIPVIAAGG-VRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHhcCCCEEEeCC-CCCHHHHHHHHHcCCCEEEE
Confidence 89999999998877744442 56899999999887444443
No 263
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=27.12 E-value=2.7e+02 Score=28.61 Aligned_cols=68 Identities=4% Similarity=-0.003 Sum_probs=47.1
Q ss_pred HHHHHhhcCCeEEeCCccccC--HHHHHHHHHcC------C----CCEEEeccCCccc---HHHHHHHHHHHHHcCCcE-
Q 012041 346 WASLQSSVDIQLVGDDLLVTN--PKRIAEAIQKK------S----CNGLLLKVNQIGT---VTESIQAALDSKSAGWGV- 409 (472)
Q Consensus 346 ~~~L~~~~~~pI~~dE~~~~~--~~~~~~~i~~~------a----~d~i~ik~~k~GG---itea~~ia~~A~a~g~~~- 409 (472)
.+.+.++.++||+.-=-..++ .+.++++++.+ + ++.|++|-+..-= |.-+++++++|+++|+.|
T Consensus 84 v~~~A~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 84 VHEVAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred HHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 445556667776542222445 56777777765 2 8889999887643 778899999999999987
Q ss_pred -EecC
Q 012041 410 -MVSH 413 (472)
Q Consensus 410 -~v~~ 413 (472)
-+||
T Consensus 164 aELG~ 168 (350)
T PRK09197 164 IELGV 168 (350)
T ss_pred EEEec
Confidence 3455
No 264
>PRK08185 hypothetical protein; Provisional
Probab=27.07 E-value=3e+02 Score=27.38 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=42.7
Q ss_pred HHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE
Q 012041 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 346 ~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~ 409 (472)
+..+.++.++||+.-=-...+.+.+++.++.+ ++.|++|-+..- =+..++++.++|+++|+.+
T Consensus 60 ~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 60 VRERAKRSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 34444455566643222245778888888876 688888876642 3556788888999999887
No 265
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=27.02 E-value=2.9e+02 Score=27.54 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=48.8
Q ss_pred HHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecC
Q 012041 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 346 ~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~v~~ 413 (472)
...++++.++||+.-=-...+.+.+++.++.| ++.|++|-+..- =|..+++++++|+++|+.| -+||
T Consensus 66 ~~~~a~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ 137 (286)
T PRK12738 66 CSAYSTTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGR 137 (286)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 45555666677754322356789999999886 789999987652 3677899999999999887 3455
No 266
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=27.00 E-value=2.8e+02 Score=29.03 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred hCCeeEEeCCCCcCCHHHHHHHHhhcCC---eEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHH
Q 012041 328 DFPIVSIEDPFDQDDWSSWASLQSSVDI---QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKS 404 (472)
Q Consensus 328 ~~~l~~iEdP~~~~D~~~~~~L~~~~~~---pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a 404 (472)
+-+-..+-+|..+.....+..+.+..+. .+-.|+. ..+++++++.++.+..=++.-.++-.|.+.+..+++++|++
T Consensus 153 ~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t~~v~l~~pn~tG~v~~l~~I~~~a~~ 231 (447)
T PRK00451 153 KRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHA 231 (447)
T ss_pred CCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCeEEEEEECCCCCCeeCCHHHHHHHHHH
Confidence 3344566678777666777766666552 2223432 34678888888654322223245778999999999999999
Q ss_pred cCCcEEe
Q 012041 405 AGWGVMV 411 (472)
Q Consensus 405 ~g~~~~v 411 (472)
+|+.+++
T Consensus 232 ~~~~~iv 238 (447)
T PRK00451 232 GGALFIV 238 (447)
T ss_pred CCCEEEE
Confidence 9988776
No 267
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=26.70 E-value=4.8e+02 Score=24.89 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHhhC--CeeEEeCCCCcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 312 VLSAQSLGDLYKEFVRDF--PIVSIEDPFDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~--~l~~iEdP~~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
..+++++..+ +...+.+ ++.++|--=..-|.+-.+++++.+ ++|++.+-- +.++++++++++.+ +|.+.+
T Consensus 131 ~~~~e~~~ay-A~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGG-Irs~e~a~~l~~aG-AD~VVV 203 (219)
T cd02812 131 DLKPEDAAAY-ALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGG-IRSGEQAKEMAEAG-ADTIVV 203 (219)
T ss_pred CCCHHHHHHH-HHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCC-CCCHHHHHHHHHcC-CCEEEE
Confidence 3567777655 6655664 488889322236788899999998 777754442 57889999998766 577665
No 268
>PRK09206 pyruvate kinase; Provisional
Probab=26.66 E-value=4.8e+02 Score=28.02 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=84.8
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCCCC--cCCHHHHHHHHhhcC---CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD--QDDWSSWASLQSSVD---IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP~~--~~D~~~~~~L~~~~~---~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
+|..+.-+. ++.-++++.||=--|- ++|+..++++.+..+ ++|++-=......+++...++. +|.+.+-.+
T Consensus 170 ltekD~~di--~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~--~DgImVaRG 245 (470)
T PRK09206 170 LAEKDKQDL--IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA--SDGIMVARG 245 (470)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh--CCEEEECcc
Confidence 455554432 2333566666666654 467777777765542 4444431112334556666655 999998776
Q ss_pred Cccc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCccc-----CCCCCchhH
Q 012041 388 QIGT-------VTESIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKT-----GAPCRSERL 446 (472)
Q Consensus 388 k~GG-------itea~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~-----g~~~~~e~~ 446 (472)
..|- ..--.++++.|+++|.++++..++.||.. +=..|+|-|. ++..+.+ -+-.+-|.+
T Consensus 246 DLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV 325 (470)
T PRK09206 246 DLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAV 325 (470)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHH
Confidence 5542 22346788899999999999888877743 2367777775 4555543 233456777
Q ss_pred HHhhHHHH
Q 012041 447 AKYNQLLR 454 (472)
Q Consensus 447 ~k~n~ll~ 454 (472)
...++..+
T Consensus 326 ~~m~~I~~ 333 (470)
T PRK09206 326 SIMATICE 333 (470)
T ss_pred HHHHHHHH
Confidence 77777544
No 269
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=26.53 E-value=6.5e+02 Score=25.15 Aligned_cols=43 Identities=7% Similarity=0.168 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhh-CCeeEEeCCCCcCCHHHHHHHHhhcCCeEEe
Q 012041 314 SAQSLGDLYKEFVRD-FPIVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (472)
Q Consensus 314 s~~eai~~~~~~l~~-~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~ 359 (472)
..++++++.....+. .+..|+|-| .+.+.++++.+++++|++.
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~~---~~~~~i~~~~~~~~~Pl~~ 207 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEAM---TELEMYRRFADAVKVPILA 207 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC---CCHHHHHHHHHhcCCCEEE
Confidence 368999985554442 458999875 4678888999888888744
No 270
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.25 E-value=1.3e+02 Score=28.78 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
-|++..+++++.+++|+++.-- +++++++.++++...+|.+.+
T Consensus 180 ~~~~~i~~i~~~~~~pvia~GG-i~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 180 YDLELIRAVSSAVNIPVIASGG-AGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCHHHHHHHHhhCCCCEEEeCC-CCCHHHHHHHHHhCCCCEEEE
Confidence 4788899999988888755543 567899999999877887776
No 271
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=26.23 E-value=2.6e+02 Score=29.80 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhCC---e-eEEeCCCCc----------CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEE
Q 012041 317 SLGDLYKEFVRDFP---I-VSIEDPFDQ----------DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (472)
Q Consensus 317 eai~~~~~~l~~~~---l-~~iEdP~~~----------~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i 382 (472)
++++.+.+++++.+ | .+|=||+-. .=++..++|+++.++.++.||. .|..-+.=++..-.-++ |
T Consensus 198 ~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV-~tGFGRTG~~FA~e~~g-i 275 (449)
T COG0161 198 EAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV-ATGFGRTGKMFACEHAG-I 275 (449)
T ss_pred HHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc-eeCCCcCchhhhhhhcC-C
Confidence 55666677777754 3 488899753 3568888888999999999996 56544444433322233 5
Q ss_pred Eecc
Q 012041 383 LLKV 386 (472)
Q Consensus 383 ~ik~ 386 (472)
.||+
T Consensus 276 ~PDi 279 (449)
T COG0161 276 VPDI 279 (449)
T ss_pred CCCe
Confidence 5565
No 272
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=26.10 E-value=3.1e+02 Score=27.32 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=47.7
Q ss_pred HHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--EecCC
Q 012041 346 WASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--MVSHR 414 (472)
Q Consensus 346 ~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~v~~~ 414 (472)
.+.+.++.+ +||+.-=-...+.+.+++.++.+ ++.+++|-++.- =|..+++++++|+++|+.+ -+||-
T Consensus 67 ~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 141 (286)
T PRK08610 67 VEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTV 141 (286)
T ss_pred HHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 334444443 56653222356789999999986 799999987752 3667899999999999887 44553
No 273
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=25.96 E-value=2.3e+02 Score=29.11 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhCCeeEEe-CCCCcCCHHHHHHHHhhcCCeEEeCCcc-cc----CHHHHHHHHHcCCCCEEEeccCCc
Q 012041 316 QSLGDLYKEFVRDFPIVSIE-DPFDQDDWSSWASLQSSVDIQLVGDDLL-VT----NPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iE-dP~~~~D~~~~~~L~~~~~~pI~~dE~~-~~----~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
+++..+|+...-..++.|+- =|..-..-..|+++.+.-++||+||+.- .+ .-..+.+++..+.+.+..+---.+
T Consensus 145 ~~a~~~YA~aal~aG~afvN~~P~~iA~dP~~~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~Ni 224 (362)
T COG1260 145 ESASYFYAAAALAAGVAFVNAIPVFIASDPAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNI 224 (362)
T ss_pred hHHHHHHHHHHHHcCCceecccCccccCCHHHHHHHHHcCCceeccchhhhcCCceeHHHHHHHHHHcCceeeeEEEEec
Confidence 45555666654455777773 3544444467999999999999999961 01 136777888888777776666677
Q ss_pred ccHHHHHHHHH
Q 012041 390 GTVTESIQAAL 400 (472)
Q Consensus 390 GGitea~~ia~ 400 (472)
||=++.+.+.+
T Consensus 225 gGN~Dflnl~~ 235 (362)
T COG1260 225 GGNTDFLNLLA 235 (362)
T ss_pred CCChHHHHhcc
Confidence 88888876654
No 274
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=25.78 E-value=1.2e+02 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=19.2
Q ss_pred ceEEEEEEEEEecCCCCCeEEEEEEEC
Q 012041 44 AKVKSVKARQIIDSRGNPTVEVDLITD 70 (472)
Q Consensus 44 m~I~~V~~~~v~~~~~~~~v~V~I~td 70 (472)
|+||+|+.++| ++.|+---.|.|+.|
T Consensus 1 m~iTdVRirkv-~~dgrmkA~vsvT~D 26 (95)
T COG2088 1 MEITDVRIRKV-DTDGRMKAYVSVTLD 26 (95)
T ss_pred CcceeEEEEEe-cCCCcEEEEEEEEec
Confidence 89999999998 555654456666665
No 275
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=25.76 E-value=1.4e+02 Score=31.98 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHc--CCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCCCch
Q 012041 367 PKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSA--GWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSE 444 (472)
Q Consensus 367 ~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~--g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~~~e 444 (472)
.+.+..+++.+ +|++.+|..+ |=-...+++++..++. ++++|+|- .-|.. . +.-...+++..++.|.-.++-
T Consensus 227 ~~ra~~Lv~aG-Vd~i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g~--~~t~~-~-~~~l~~~G~d~i~vg~g~Gs~ 300 (475)
T TIGR01303 227 GGKAKALLDAG-VDVLVIDTAH-GHQVKMISAIKAVRALDLGVPIVAGN--VVSAE-G-VRDLLEAGANIIKVGVGPGAM 300 (475)
T ss_pred HHHHHHHHHhC-CCEEEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEec--cCCHH-H-HHHHHHhCCCEEEECCcCCcc
Confidence 46677777754 9999999999 6556677777777776 78887752 12211 1 233345688899877665555
Q ss_pred hHHH
Q 012041 445 RLAK 448 (472)
Q Consensus 445 ~~~k 448 (472)
++..
T Consensus 301 ~ttr 304 (475)
T TIGR01303 301 CTTR 304 (475)
T ss_pred ccCc
Confidence 5433
No 276
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.75 E-value=3.4e+02 Score=26.87 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=44.4
Q ss_pred HHHhhcCCeEE--eCCccccCHHHHHHHHHcCCCCEEEeccCCccc---HHHHHHHHHHHHHcCCcE--EecC
Q 012041 348 SLQSSVDIQLV--GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT---VTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 348 ~L~~~~~~pI~--~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG---itea~~ia~~A~a~g~~~--~v~~ 413 (472)
.+.++.++||+ .|. ..+.+.+++.++.| ++.||+|-..... +..++++.++|+.+|+.+ -++|
T Consensus 68 ~~a~~~~vpv~lHlDH--~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~gh 137 (281)
T PRK06806 68 AAAKQAKVPVAVHFDH--GMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGR 137 (281)
T ss_pred HHHHHCCCCEEEECCC--CCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 33445556664 454 46788888888876 7999999876542 445778888999999876 3355
No 277
>PLN02656 tyrosine transaminase
Probab=25.65 E-value=2.8e+02 Score=28.67 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=55.0
Q ss_pred HHHHHHHHHHH-hhCCeeEEeCCCCcCCHHHHHHHHhhcC-----CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC-
Q 012041 316 QSLGDLYKEFV-RDFPIVSIEDPFDQDDWSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ- 388 (472)
Q Consensus 316 ~eai~~~~~~l-~~~~l~~iEdP~~~~D~~~~~~L~~~~~-----~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k- 388 (472)
.+++..+...+ ++-+-..+++|..+. +....+..+ +|+.-++.+.-+++++.+.++.+..-++...++.
T Consensus 106 ~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP 181 (409)
T PLN02656 106 TQAIDVALSMLARPGANILLPRPGFPI----YELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNP 181 (409)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCc----HHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCC
Confidence 45665544443 444578899998642 222222233 2321122233467888887766655556555543
Q ss_pred cccH---HHHHHHHHHHHHcCCcEEe
Q 012041 389 IGTV---TESIQAALDSKSAGWGVMV 411 (472)
Q Consensus 389 ~GGi---tea~~ia~~A~a~g~~~~v 411 (472)
.|.+ .+..+++++|+.+|+.+++
T Consensus 182 tG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 182 CGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4544 4889999999999988765
No 278
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=25.64 E-value=87 Score=30.32 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=32.0
Q ss_pred CCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEe----cCCCCCC
Q 012041 378 SCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMV----SHRSGET 418 (472)
Q Consensus 378 a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v----~~~~~Et 418 (472)
..|...|++ +.|+..+.+++++.|+++|+.||+ .|++.+.
T Consensus 38 ~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 38 PSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDH 81 (316)
T ss_dssp ESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTS
T ss_pred ceeeecccc-ccchhhhhhhhhhccccccceEEEeeecccccccc
Confidence 367777876 779999999999999999999865 5644433
No 279
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=25.57 E-value=3.9e+02 Score=27.26 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHH-----hhCCeeEEeCCCCcCCHHHHHHHHhhcCCe---EEeCCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 315 AQSLGDLYKEFV-----RDFPIVSIEDPFDQDDWSSWASLQSSVDIQ---LVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 315 ~~eai~~~~~~l-----~~~~l~~iEdP~~~~D~~~~~~L~~~~~~p---I~~dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
..+++..+...+ .+-+-..+-+|-++-.+..|..+.+..++. +-.++....+++++.+.+..+ ..++.+.-
T Consensus 89 ~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-~~lv~~~~ 167 (403)
T TIGR01979 89 TTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEK-TKLVAITH 167 (403)
T ss_pred HHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccC-CeEEEEEc
Confidence 345554444332 223345566665555666777777666632 223333334578888887653 45555442
Q ss_pred --CCcccHHHHHHHHHHHHHcCCcEEecC
Q 012041 387 --NQIGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 387 --~k~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
+..|.+.+..+++++|+++|+.+++-.
T Consensus 168 ~~~~tG~~~~~~~i~~~~~~~~~~~ivD~ 196 (403)
T TIGR01979 168 VSNVLGTVNPVEEIAKLAHQVGAKVLVDG 196 (403)
T ss_pred ccccccccCCHHHHHHHHHHcCCEEEEEc
Confidence 446888889999999999998886644
No 280
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=25.39 E-value=3.3e+02 Score=27.14 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 012041 343 WSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 343 ~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~ 409 (472)
....+.+.++.+ +||+.-=-...+.+.+.+.++.+ ++.+++|-++. -=|..+++++++|+++|+.|
T Consensus 64 ~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~V 134 (285)
T PRK07709 64 VAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSV 134 (285)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 281
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=25.08 E-value=5.7e+02 Score=23.86 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEe----C----Ccccc-CHHHHHHHHHcCCCCEEEecc
Q 012041 316 QSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVG----D----DLLVT-NPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~----d----E~~~~-~~~~~~~~i~~~a~d~i~ik~ 386 (472)
....+. .+.+.+.++..++ + ..++.++++++...+|+++ | +.++. +.++++.+++.+ +|++.++.
T Consensus 27 ~~i~~~-a~~~~~~G~~~~~--~--~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG-ad~I~~~~ 100 (219)
T cd04729 27 EIMAAM-ALAAVQGGAVGIR--A--NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG-ADIIALDA 100 (219)
T ss_pred HHHHHH-HHHHHHCCCeEEE--c--CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC-CCEEEEeC
Confidence 344444 5556778887777 3 5678888888887899874 1 11111 234777777776 46898886
Q ss_pred CCcccH--HHHHHHHHHHHHcC-CcEEecCCCCCChhhHHHHHHHhhcCCCcc
Q 012041 387 NQIGTV--TESIQAALDSKSAG-WGVMVSHRSGETEDNFIADLSVGLASGQIK 436 (472)
Q Consensus 387 ~k~GGi--tea~~ia~~A~a~g-~~~~v~~~~~Et~~s~~a~lAva~~~~~i~ 436 (472)
.....- .+..++.+.+++.+ +.++++..+ ... +..+...++.++.
T Consensus 101 ~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t---~~e--a~~a~~~G~d~i~ 148 (219)
T cd04729 101 TDRPRPDGETLAELIKRIHEEYNCLLMADIST---LEE--ALNAAKLGFDIIG 148 (219)
T ss_pred CCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC---HHH--HHHHHHcCCCEEE
Confidence 543211 14556676777777 777665422 111 2444555666664
No 282
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.93 E-value=3.4e+02 Score=25.04 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=45.1
Q ss_pred hhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccH-------HHHHHHHHHHHHcCCcEEecCCCCCCh
Q 012041 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTV-------TESIQAALDSKSAGWGVMVSHRSGETE 419 (472)
Q Consensus 351 ~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGi-------tea~~ia~~A~a~g~~~~v~~~~~Et~ 419 (472)
+..|+.++.|+. -.....+..+... ..|+|.+|...+-.+ .-...+..+|+..|+.+++.+ .|+.
T Consensus 143 ~~~G~~ialddf-g~~~~~~~~l~~l-~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g--Ve~~ 214 (241)
T smart00052 143 RELGVRIALDDF-GTGYSSLSYLKRL-PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG--VETP 214 (241)
T ss_pred HHCCCEEEEeCC-CCcHHHHHHHHhC-CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec--CCCH
Confidence 345899999994 4555665555443 599999997655443 345667889999999987765 3554
No 283
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.58 E-value=4.4e+02 Score=27.05 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEec-c-CCcccHHHH
Q 012041 318 LGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK-V-NQIGTVTES 395 (472)
Q Consensus 318 ai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik-~-~k~GGitea 395 (472)
++..+..++.+-+-..+.+|....-..-|+.+.++.++.+.-=+. .+++++++.++.+ ..++.+. + +-.|-+.+.
T Consensus 74 al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~--~d~~~le~~i~~~-tklv~le~psnptg~v~dl 150 (378)
T TIGR01329 74 ALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT--TDLDKVKAALGPK-TKLVLLESPTNPLQKIVDI 150 (378)
T ss_pred HHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC--CCHHHHHHhcCcC-ceEEEEECCCCCCCeeecH
Confidence 343334455554555566666544444456666667754432222 3578888877643 4455543 3 346778899
Q ss_pred HHHHHHHHHcCCcEEecC
Q 012041 396 IQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 396 ~~ia~~A~a~g~~~~v~~ 413 (472)
.+++++|+++|+.+++-.
T Consensus 151 ~~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 151 RKISEMAHAQNALVVVDN 168 (378)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 999999999999987755
No 284
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=24.54 E-value=3.5e+02 Score=27.83 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=45.4
Q ss_pred HHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc----------cHHHHHHHHHHHHHcCCcE
Q 012041 348 SLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG----------TVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 348 ~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G----------Gitea~~ia~~A~a~g~~~ 409 (472)
.+.+... +||+.-=-...+.+.+.+.++.+ ++.|++|-+..- =|..+++++++|+++|+.|
T Consensus 66 ~~ae~~~~VPValHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 66 AAIEEYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred HHHHhCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3444453 66654322356789999999986 799999988741 4778999999999999887
No 285
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=24.51 E-value=6.9e+02 Score=25.27 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEec--cccccccc------------C-cceeecCCCCCCCCCCccCHHHHHHHHHHH
Q 012041 261 REGLVLLTDAIEKAGYTGKINIGMDV--AASEFFTK------------D-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEF 325 (472)
Q Consensus 261 ~~~l~~v~~av~~~g~~g~i~l~vD~--~a~~~~~~------------~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~ 325 (472)
.-++.++|+++.+.|+..++.||-=. -++.||.+ | ..|++++. +..||++....-
T Consensus 165 DGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~----------n~~eAlre~~~D 234 (320)
T cd04824 165 DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPG----------ARGLALRAVERD 234 (320)
T ss_pred ccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCc----------CHHHHHHHHHhh
Confidence 45788999999999982266666321 12344421 1 35766532 356776653333
Q ss_pred Hhh-CCeeEEeCCCCcCCHHHHHHHHhhc-CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHH
Q 012041 326 VRD-FPIVSIEDPFDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSK 403 (472)
Q Consensus 326 l~~-~~l~~iEdP~~~~D~~~~~~L~~~~-~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~ 403 (472)
+++ .++.++.=-++ -++-.+++++++ .+||++-..+ .-..-++...++|..|- =.-+++...--+
T Consensus 235 ~~EGAD~lMVKPal~--YLDIi~~~k~~~~~~PvaaYqVS-GEYaMikaAa~~G~iDe----------~~~~~Esl~~ik 301 (320)
T cd04824 235 VSEGADMIMVKPGTP--YLDIVREAKDKHPDLPLAVYHVS-GEYAMLHAAAEAGAFDL----------KRAVLEAMTGFR 301 (320)
T ss_pred HHhCCCEEEEcCCch--HHHHHHHHHHhccCCCEEEEEcc-HHHHHHHHHHHcCCCcH----------HHHHHHHHHHHH
Confidence 343 67888875566 367789999999 7999887643 12355666777777772 112333334444
Q ss_pred HcCCcEEe
Q 012041 404 SAGWGVMV 411 (472)
Q Consensus 404 a~g~~~~v 411 (472)
.+|-.+++
T Consensus 302 RAGAd~Ii 309 (320)
T cd04824 302 RAGADIII 309 (320)
T ss_pred hcCCCEEE
Confidence 56666554
No 286
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=24.48 E-value=1.9e+02 Score=29.45 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHhhc--CCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 343 ~~~~~~L~~~~--~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
++..+++++++ ++||++--- +++.+|+.+++..+ +|.|++-
T Consensus 276 l~~v~~l~~~~~~~ipIig~GG-I~s~eda~e~l~aG-Ad~V~v~ 318 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGG-IDSAEDAYEKIRAG-ASLVQIY 318 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-CCHHHHH
Confidence 34445566666 466654332 45667777777644 6665553
No 287
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.45 E-value=1.8e+02 Score=27.68 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCccc
Q 012041 368 KRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKT 437 (472)
Q Consensus 368 ~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~ 437 (472)
+.++.+++.+.++.||+.--.. -=...+.++..+|+.+|+.+++... +++|..+++.-+-+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~---------~dlA~~~~adGVHL 93 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD---------SRIAGRVKADGLHI 93 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH---------HHHHHHhCCCEEEE
Confidence 4566667676678999853322 2234467788899999999887542 45555555544433
No 288
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=24.32 E-value=3.7e+02 Score=26.74 Aligned_cols=75 Identities=20% Similarity=0.145 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCCCCc
Q 012041 364 VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRS 443 (472)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~~~~ 443 (472)
+.+++++.++++.+ +|+|++|=+..- ++++++++...++ ++.+-. +|......+... ...+..++..|.+..+
T Consensus 195 vesle~~~eAl~ag-aDiImLDNm~~e---~~~~av~~l~~~~-~~~lEa-SGgIt~~ni~~y-A~tGVD~IS~galths 267 (280)
T COG0157 195 VESLEEAEEALEAG-ADIIMLDNMSPE---ELKEAVKLLGLAG-RALLEA-SGGITLENIREY-AETGVDVISVGALTHS 267 (280)
T ss_pred cCCHHHHHHHHHcC-CCEEEecCCCHH---HHHHHHHHhccCC-ceEEEE-eCCCCHHHHHHH-hhcCCCEEEeCccccC
Confidence 34567777777664 677777776543 4444444433333 333333 222222222222 3356666777766544
Q ss_pred hh
Q 012041 444 ER 445 (472)
Q Consensus 444 e~ 445 (472)
.+
T Consensus 268 ~~ 269 (280)
T COG0157 268 AP 269 (280)
T ss_pred Cc
Confidence 43
No 289
>PRK07094 biotin synthase; Provisional
Probab=24.26 E-value=7.1e+02 Score=24.71 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHHHHhhCCee--EE---eCCCC-cCCHHH-HHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 313 LSAQSLGDLYKEFVRDFPIV--SI---EDPFD-QDDWSS-WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~--~i---EdP~~-~~D~~~-~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
++.++.++.... +.+.++. +| ++|.. .+++.. .+.+++..++.+...=. ..+.+.++.+-+.| +|.+.+.
T Consensus 70 ls~eei~~~~~~-~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g-~~~~e~l~~Lk~aG-~~~v~~g 146 (323)
T PRK07094 70 LSPEEILECAKK-AYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLG-ERSYEEYKAWKEAG-ADRYLLR 146 (323)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecC-CCCHHHHHHHHHcC-CCEEEec
Confidence 478888877544 4555533 33 46653 333333 34555544554432111 12456666665554 6666653
Q ss_pred c-----------CCcccHHHHHHHHHHHHHcCCcE----EecCCCCCChhhH
Q 012041 386 V-----------NQIGTVTESIQAALDSKSAGWGV----MVSHRSGETEDNF 422 (472)
Q Consensus 386 ~-----------~k~GGitea~~ia~~A~a~g~~~----~v~~~~~Et~~s~ 422 (472)
+ .+-....+.++.++.++++|+.+ |+|+ .+|+....
T Consensus 147 lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl-pget~ed~ 197 (323)
T PRK07094 147 HETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGL-PGQTLEDL 197 (323)
T ss_pred cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEEC-CCCCHHHH
Confidence 3 34567889999999999999865 4444 46775544
No 290
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.05 E-value=2.7e+02 Score=26.34 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCcEEecCCC-C--------CChhhHHHHHHHhhcCCCcccCCC
Q 012041 394 ESIQAALDSKSAGWGVMVSHRS-G--------ETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 394 ea~~ia~~A~a~g~~~~v~~~~-~--------Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
++.++.+.|+.+|+++++-... + ......++.++...++.+++...+
T Consensus 110 ~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~ 165 (235)
T cd00958 110 ELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT 165 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC
Confidence 6777777888888887763211 0 112233466677778888887543
No 291
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=23.98 E-value=36 Score=22.73 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=14.0
Q ss_pred CCCcchhhhhhhhhcC
Q 012041 26 SYRPMRVQCSVASTAS 41 (472)
Q Consensus 26 ~~~p~~~~~~~~~~~~ 41 (472)
..+|.|++-+.++||+
T Consensus 16 ~~qP~d~~~f~~~yF~ 31 (38)
T smart00394 16 RAQPSDLVQFAADYFE 31 (38)
T ss_pred HHCCCcHHHHHHHHHH
Confidence 5689999999999994
No 292
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.57 E-value=5e+02 Score=22.64 Aligned_cols=50 Identities=8% Similarity=-0.028 Sum_probs=41.9
Q ss_pred CHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHc---CCcEEecCCC
Q 012041 366 NPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSA---GWGVMVSHRS 415 (472)
Q Consensus 366 ~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~---g~~~~v~~~~ 415 (472)
.++++.+.+.+..+|++.+..........+.++.+..++. ++.+++|...
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 4788999888999999999988888888999999988888 5667787743
No 293
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=23.50 E-value=6.4e+02 Score=23.88 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc----
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---- 389 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---- 389 (472)
+.+++++--.++.+-++=.+|==|+..+-+...+.|.+. ++++.+-- +.+..+..-..+.| ++++.|-++|+
T Consensus 62 ~~~~mi~~a~~l~~~~~~i~iKIP~T~~Gl~A~~~L~~~-Gi~v~~T~--vfs~~Qa~~Aa~aG-a~yispyvgRi~d~g 137 (213)
T TIGR00875 62 DAEGMVEEAKELAKLAPNIVVKIPMTSEGLKAVKILKKE-GIKTNVTL--VFSAAQALLAAKAG-ATYVSPFVGRLDDIG 137 (213)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHHHHC-CCceeEEE--ecCHHHHHHHHHcC-CCEEEeecchHHHcC
Confidence 345555553333333444667678776666666666543 67765554 34677777777776 89999999876
Q ss_pred -ccHHHHHHHHHHHHHcCCcE
Q 012041 390 -GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 390 -GGitea~~ia~~A~a~g~~~ 409 (472)
-|+.-..++.++.+.+|.++
T Consensus 138 ~dg~~~v~~~~~~~~~~~~~t 158 (213)
T TIGR00875 138 GDGMKLIEEVKTIFENHAPDT 158 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 57888889999998886444
No 294
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=23.37 E-value=1.8e+02 Score=27.40 Aligned_cols=42 Identities=14% Similarity=0.423 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.+++..+++++.+++||++.-- +++++++.++++.+ +|.+.+
T Consensus 164 ~~~~~l~~i~~~~~ipvia~GG-I~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 164 PDFELLKELRKALGIPVIAEGR-INSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEeCC-CCCHHHHHHHHHCC-CCEEEE
Confidence 4678889999988888876653 56789999999987 888876
No 295
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=23.34 E-value=2.1e+02 Score=26.71 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=37.7
Q ss_pred CHHHHHHHHhhcCCeEEeC--------Ccccc-CHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec
Q 012041 342 DWSSWASLQSSVDIQLVGD--------DLLVT-NPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVS 412 (472)
Q Consensus 342 D~~~~~~L~~~~~~pI~~d--------E~~~~-~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~ 412 (472)
-.+..+.+++.+++||+|= +.+.| +.+++..+++.| +|++-+|-+.----....++....+..+..+|.-
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aG-adIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MAD 98 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAG-ADIIALDATDRPRPETLEELIREIKEKYQLVMAD 98 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT--SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcC-CCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeee
Confidence 4455666666677776651 22222 457777777765 7888877754332255566666666676555554
Q ss_pred CC
Q 012041 413 HR 414 (472)
Q Consensus 413 ~~ 414 (472)
+.
T Consensus 99 is 100 (192)
T PF04131_consen 99 IS 100 (192)
T ss_dssp -S
T ss_pred cC
Confidence 43
No 296
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.21 E-value=3.2e+02 Score=27.19 Aligned_cols=63 Identities=6% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 012041 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 346 ~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~ 409 (472)
...+.++.++||+.-=-...+.+.+.+.++.| ++.|++|-+.. ==|..+++++++|+.+|+.+
T Consensus 66 ~~~~A~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 66 VRTAAEKASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSV 131 (284)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 297
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=23.12 E-value=4.8e+02 Score=24.71 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=45.8
Q ss_pred CeEEeCCccccC----HHHHHHHHHcCCCCEEEeccCCccc---HHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHH
Q 012041 355 IQLVGDDLLVTN----PKRIAEAIQKKSCNGLLLKVNQIGT---VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLS 427 (472)
Q Consensus 355 ~pI~~dE~~~~~----~~~~~~~i~~~a~d~i~ik~~k~GG---itea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lA 427 (472)
+.++.+...... ...+.++++.+ ++.+|+..-.... .-.++++..+|+++|+++++... .++|
T Consensus 8 lylvt~~~~~~~~~~~~~~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~---------~dlA 77 (211)
T COG0352 8 LYLVTDRPLIYDGVDLLEWVEAALKGG-VTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDR---------VDLA 77 (211)
T ss_pred eEEEcCCccccccchhHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc---------HHHH
Confidence 455555433222 24455556554 8888887654433 45667899999999999988654 4555
Q ss_pred HhhcCCCcccC
Q 012041 428 VGLASGQIKTG 438 (472)
Q Consensus 428 va~~~~~i~~g 438 (472)
...++..+-+|
T Consensus 78 ~~~~AdGVHlG 88 (211)
T COG0352 78 LAVGADGVHLG 88 (211)
T ss_pred HhCCCCEEEcC
Confidence 55555544433
No 298
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=23.11 E-value=2e+02 Score=27.01 Aligned_cols=44 Identities=11% Similarity=0.333 Sum_probs=35.5
Q ss_pred cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEec
Q 012041 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385 (472)
Q Consensus 340 ~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik 385 (472)
..++...+++++.+++|+++.-- +++++++.++++.+ +|.+.+-
T Consensus 159 ~~~~~~i~~i~~~~~iPvia~GG-I~t~~~~~~~l~~G-adgV~iG 202 (221)
T PRK01130 159 EPDFALLKELLKAVGCPVIAEGR-INTPEQAKKALELG-AHAVVVG 202 (221)
T ss_pred CcCHHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHCC-CCEEEEc
Confidence 34678889999988988877653 66789999999987 8888774
No 299
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=22.95 E-value=8.2e+02 Score=24.98 Aligned_cols=48 Identities=8% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCCcCCH----HHHHHHHhhcCCeEEeCCc-cccCHHHHHHHHHcCCCCEEEe
Q 012041 336 DPFDQDDW----SSWASLQSSVDIQLVGDDL-LVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 336 dP~~~~D~----~~~~~L~~~~~~pI~~dE~-~~~~~~~~~~~i~~~a~d~i~i 384 (472)
+|-...|+ +..+++++.+++||+.-+. ...++++++.+.+. .+|+|.+
T Consensus 164 ~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~-Gvd~I~V 216 (352)
T PRK05437 164 QPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADA-GVKAIDV 216 (352)
T ss_pred CCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHc-CCCEEEE
Confidence 44445567 4677788888899987654 12456777666665 4888887
No 300
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=22.86 E-value=6.9e+02 Score=24.75 Aligned_cols=70 Identities=17% Similarity=0.053 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 365 TNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 365 ~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
.+.+++.++++.+ +|++++|=+ ...+..+.+.+.+..+.++.+.- +|......+..+ ...+..++..|.+
T Consensus 196 ~tleea~ea~~~G-aDiI~lDn~---~~e~l~~~v~~l~~~~~~~~lea-sGGI~~~ni~~y-a~~GvD~is~gal 265 (277)
T TIGR01334 196 DTIEQALTVLQAS-PDILQLDKF---TPQQLHHLHERLKFFDHIPTLAA-AGGINPENIADY-IEAGIDLFITSAP 265 (277)
T ss_pred CCHHHHHHHHHcC-cCEEEECCC---CHHHHHHHHHHHhccCCCEEEEE-ECCCCHHHHHHH-HhcCCCEEEeCcc
Confidence 3567777777665 688888733 35566666666553333333322 222223333333 3345666666665
No 301
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.73 E-value=4.3e+02 Score=21.63 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHc--CCcEEecCC
Q 012041 367 PKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSA--GWGVMVSHR 414 (472)
Q Consensus 367 ~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~--g~~~~v~~~ 414 (472)
.+++.+.+.....|++-+.......+..+.++++.+++. ++.+++|..
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 477888888889999999998888999999999999887 678888774
No 302
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=22.71 E-value=1.5e+02 Score=28.59 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=75.1
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccccccccC-cceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCC-----eeEEe-CC
Q 012041 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP-----IVSIE-DP 337 (472)
Q Consensus 265 ~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~-~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~-----l~~iE-dP 337 (472)
+++.++-+.-|-+ =|.+.+|+--. ++.+ ++|++-..+. +.+.+|++-++.. .+++.+ +..+- |-
T Consensus 111 ~lI~~~a~~FGsQ-ciVvaIDakr~--~~g~~~~~~v~~~gG--r~~t~~d~~~Wa~----~~e~~GAGEIlLtsmD~DG 181 (256)
T COG0107 111 ELITEAADRFGSQ-CIVVAIDAKRV--PDGENGWYEVFTHGG--REDTGLDAVEWAK----EVEELGAGEILLTSMDRDG 181 (256)
T ss_pred HHHHHHHHHhCCc-eEEEEEEeeec--cCCCCCcEEEEecCC--CcCCCcCHHHHHH----HHHHcCCceEEEeeecccc
Confidence 4555555554321 38889999421 1001 4565522211 1234566655543 355554 22332 22
Q ss_pred CC-cCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEe-ccCCcccHHHHHHHHHHHHHcCCcE
Q 012041 338 FD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL-KVNQIGTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 338 ~~-~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~i-k~~k~GGitea~~ia~~A~a~g~~~ 409 (472)
.. --|++..+.++..+.+|+++--- +.++++|.+.+..+.+|...- .+=+.|.+ ...++-.+-..+|+++
T Consensus 182 tk~GyDl~l~~~v~~~v~iPvIASGG-aG~~ehf~eaf~~~~adAaLAAsiFH~~~~-~i~evK~yL~~~gi~V 253 (256)
T COG0107 182 TKAGYDLELTRAVREAVNIPVIASGG-AGKPEHFVEAFTEGKADAALAASIFHFGEI-TIGEVKEYLAEQGIEV 253 (256)
T ss_pred cccCcCHHHHHHHHHhCCCCEEecCC-CCcHHHHHHHHHhcCccHHHhhhhhhcCcc-cHHHHHHHHHHcCCCc
Confidence 22 24899999999999999987764 678999999998887775432 22222322 2334445555666654
No 303
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=22.69 E-value=4.6e+02 Score=26.98 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=61.6
Q ss_pred HHHHHHHHHH-HHhhCCeeEEeCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEecc--CCccc
Q 012041 315 AQSLGDLYKE-FVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV--NQIGT 391 (472)
Q Consensus 315 ~~eai~~~~~-~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~--~k~GG 391 (472)
..+++..+.. ++.+-+-..+.+|.....+.-+..+....++.+...+. .+++++.+.++.+ .++|.+.. +-.|.
T Consensus 75 g~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~--~d~~~l~~ai~~~-tklV~l~~p~NPtG~ 151 (382)
T TIGR02080 75 GMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ--GDEQALRAALAQK-PKLVLIETPSNPLLR 151 (382)
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC--CCHHHHHHhcCcC-ceEEEEECCCCCCCE
Confidence 3455554443 34444556678887766666666665555544433332 3578888887654 46555432 44588
Q ss_pred HHHHHHHHHHHHHcCCcEEecC
Q 012041 392 VTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 392 itea~~ia~~A~a~g~~~~v~~ 413 (472)
+.+..+++++|+++|+.+++-.
T Consensus 152 ~~dl~~I~~la~~~g~~vvvD~ 173 (382)
T TIGR02080 152 VVDIAKICHLAKAVGAVVVVDN 173 (382)
T ss_pred ecCHHHHHHHHHHcCCEEEEEC
Confidence 8889999999999999887755
No 304
>PRK06354 pyruvate kinase; Provisional
Probab=22.68 E-value=5.6e+02 Score=28.39 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCCCC--cCCHHHHHHHH-hhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD--QDDWSSWASLQ-SSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP~~--~~D~~~~~~L~-~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
+|..+.-+. ++.-+.++.||=-.|- ++|+...+++. +..+ ++|++-=......+.+...++. +|.+.+-.+
T Consensus 176 ltekD~~di--~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~--~DgImVaRG 251 (590)
T PRK06354 176 ITEKDREDL--IFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL--CDGLMVARG 251 (590)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh--cCEEEEccc
Confidence 455554432 2344567777777764 46777777776 3222 5554431112334555556654 999998776
Q ss_pred Cccc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCcccC-----CCCCchhH
Q 012041 388 QIGT-------VTESIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKTG-----APCRSERL 446 (472)
Q Consensus 388 k~GG-------itea~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~g-----~~~~~e~~ 446 (472)
..|- ..--.++++.|+++|.++++..++.||.. +=..|+|-|. ++..+.+. +-.+-|.+
T Consensus 252 DLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV 331 (590)
T PRK06354 252 DLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAV 331 (590)
T ss_pred hhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHH
Confidence 5542 23446788899999999999888877743 2367777776 45555543 33455667
Q ss_pred HHhhHHHHHHH
Q 012041 447 AKYNQLLRIEE 457 (472)
Q Consensus 447 ~k~n~ll~i~~ 457 (472)
...++..+-.|
T Consensus 332 ~~m~~I~~~aE 342 (590)
T PRK06354 332 QTMATIAVRIE 342 (590)
T ss_pred HHHHHHHHHHH
Confidence 66777554433
No 305
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.58 E-value=7e+02 Score=24.01 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=46.9
Q ss_pred cCHHHHHHHHHHHHhh---CCeeEEeCCCCc---CCHHHHHHHHhhcCC-eEEeCCccccCHHHHHHHHHcCCCCEEEe
Q 012041 313 LSAQSLGDLYKEFVRD---FPIVSIEDPFDQ---DDWSSWASLQSSVDI-QLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~---~~l~~iEdP~~~---~D~~~~~~L~~~~~~-pI~~dE~~~~~~~~~~~~i~~~a~d~i~i 384 (472)
.+.++.+.+ ..+.++ +++.|+|.--.. .+.+-.+++++.++. |++.+-- +++++++++++..+ +|.+.+
T Consensus 137 ~~~~~~~~~-~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGG-Irs~e~a~~~l~~G-AD~VVV 212 (232)
T PRK04169 137 LDKPDIAAY-AALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGG-IRSPEQARELMAAG-ADTIVV 212 (232)
T ss_pred CChHHHHHH-HHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECC-CCCHHHHHHHHHhC-CCEEEE
Confidence 456666655 344443 468899965433 348888999998876 7754442 57889999988876 677765
No 306
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.43 E-value=1.6e+02 Score=28.54 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEE
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVM 410 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~ 410 (472)
.+...++-++++.++||+-|=- +.++.+....++.| +|.|.+... |..+..-+.||+++.+-+.
T Consensus 169 ~n~~~l~iiie~a~VPviVDAG-iG~pSdAa~aMElG-~DaVL~NTA----iA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 169 QNPYNLEIIIEEADVPVIVDAG-IGTPSDAAQAMELG-ADAVLLNTA----IARAKDPVAMARAFALAVE 232 (262)
T ss_pred CCHHHHHHHHHhCCCCEEEeCC-CCChhHHHHHHhcc-cceeehhhH----hhccCChHHHHHHHHHHHH
Confidence 4667778888888999999985 67899999999987 788887653 6667777777777766653
No 307
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=22.42 E-value=2.2e+02 Score=28.34 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=50.2
Q ss_pred cccCHHHHHHHHHcCCCCEEEeccCCcccHH------HHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcc
Q 012041 363 LVTNPKRIAEAIQKKSCNGLLLKVNQIGTVT------ESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIK 436 (472)
Q Consensus 363 ~~~~~~~~~~~i~~~a~d~i~ik~~k~GGit------ea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~ 436 (472)
.+|+|+++.++++.-.+|.+-+-++.+=|+. +.-++..+.+..++++++.+.+|-+ +.. ..-++..+..-++
T Consensus 154 ~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~-~e~-~~~ai~~GI~KiN 231 (286)
T PRK08610 154 IYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIP-TKD-IQKAIPFGTAKIN 231 (286)
T ss_pred ccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCC-HHH-HHHHHHCCCeEEE
Confidence 4689999999999888999999997776666 5566667777889998765544433 222 2333444444444
Q ss_pred c
Q 012041 437 T 437 (472)
Q Consensus 437 ~ 437 (472)
+
T Consensus 232 i 232 (286)
T PRK08610 232 V 232 (286)
T ss_pred e
Confidence 4
No 308
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=22.37 E-value=4e+02 Score=26.57 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHh--hCCeeEEeCCCCcCCHHHHHHHHhhcC-----CeEEeCCccccCHHHHHHHHHcC-----CCCEEE
Q 012041 316 QSLGDLYKEFVR--DFPIVSIEDPFDQDDWSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKK-----SCNGLL 383 (472)
Q Consensus 316 ~eai~~~~~~l~--~~~l~~iEdP~~~~D~~~~~~L~~~~~-----~pI~~dE~~~~~~~~~~~~i~~~-----a~d~i~ 383 (472)
.+++..+...+. +-+..++++|..+. +.+..+..+ +|+-.++....++.++.+.++.. ...++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~vlv~~P~y~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 153 (363)
T PF00155_consen 78 QAALFLLLRLLKINPGDTVLVPDPCYPS----YIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVL 153 (363)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEEESSSTH----HHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEE
T ss_pred ccchhhhhhcccccccccceecCCcccc----ccccccccCceeeeccccccccccccccccccccccccccccccceee
Confidence 445555455553 56688999998854 333333444 33322233455789999988873 123333
Q ss_pred -eccCC-cc---cHHHHHHHHHHHHHcCCcEEecC
Q 012041 384 -LKVNQ-IG---TVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 384 -ik~~k-~G---Gitea~~ia~~A~a~g~~~~v~~ 413 (472)
..++. .| ...+..+++++|+.+|+.+++--
T Consensus 154 ~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De 188 (363)
T PF00155_consen 154 ICNPNNPTGSVLSLEELRELAELAREYNIIIIVDE 188 (363)
T ss_dssp EESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred ecccccccccccccccccchhhhhcccccceeeee
Confidence 33332 45 45677888888999999987643
No 309
>smart00642 Aamy Alpha-amylase domain.
Probab=22.32 E-value=82 Score=28.53 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=25.8
Q ss_pred CCEEEeccCCcccHHHHHHHHHHHHHcCCcEEe
Q 012041 379 CNGLLLKVNQIGTVTESIQAALDSKSAGWGVMV 411 (472)
Q Consensus 379 ~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v 411 (472)
.|...+++ +.|+..+.+++++.|+++|+.+++
T Consensus 57 ~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 57 SDYKQIDP-RFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444444 779999999999999999999865
No 310
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.27 E-value=3e+02 Score=22.80 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=39.5
Q ss_pred CHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcC---CcEEecCC
Q 012041 366 NPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAG---WGVMVSHR 414 (472)
Q Consensus 366 ~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g---~~~~v~~~ 414 (472)
.++++.+.+.+...|++.+-.+....+..+.++++..++.+ +.+++|..
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 46788888888889999998887778888899988888874 55677774
No 311
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=22.18 E-value=3.1e+02 Score=29.23 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=69.8
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEE-eCCCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcc
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSI-EDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG 390 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~i-EdP~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G 390 (472)
.+++.+..+.|.. -.--|..+ |..+=..+++.++++++.+.+||.--+. +.++.++.+.-..| +|+|.+=+.-.+
T Consensus 69 ~~d~~~~a~~y~~--gA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDF-iid~~QI~ea~~~G-ADavLLI~~~L~ 144 (454)
T PRK09427 69 DFDPAEIARVYKH--YASAISVLTDEKYFQGSFDFLPIVRAIVTQPILCKDF-IIDPYQIYLARYYG-ADAILLMLSVLD 144 (454)
T ss_pred CCCHHHHHHHHHc--CCeEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccc-cCCHHHHHHHHHcC-CCchhHHHHhCC
Confidence 3567666555421 11225544 6666778999999999999999999885 66788888766554 688877665554
Q ss_pred cHHHHHHHHHHHHHcCCcEEecC
Q 012041 391 TVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 391 Gitea~~ia~~A~a~g~~~~v~~ 413 (472)
-....+..++|+..|+.+.+-.
T Consensus 145 -~~~l~~l~~~a~~lGl~~lvEv 166 (454)
T PRK09427 145 -DEQYRQLAAVAHSLNMGVLTEV 166 (454)
T ss_pred -HHHHHHHHHHHHHcCCcEEEEE
Confidence 3468889999999999987644
No 312
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=22.17 E-value=3.2e+02 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=13.9
Q ss_pred CCchhHHHhhHHHHHHHHhC-Ccccc
Q 012041 441 CRSERLAKYNQLLRIEEELG-NVRYA 465 (472)
Q Consensus 441 ~~~e~~~k~n~ll~i~~~l~-~~~~~ 465 (472)
.+-+...+....+.+....+ +-.|.
T Consensus 147 tk~D~~~~~g~~~~~~~~~~~p~~~~ 172 (173)
T cd03115 147 TKLDGDARGGAALSIRAVTGKPIKFI 172 (173)
T ss_pred ECCcCCCCcchhhhhHHHHCcCeEee
Confidence 34455556666666666665 44443
No 313
>PTZ00066 pyruvate kinase; Provisional
Probab=22.15 E-value=6.5e+02 Score=27.34 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCCCC--cCCHHHHHHHHhhcC--CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD--QDDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP~~--~~D~~~~~~L~~~~~--~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k 388 (472)
+|..+.-+. .++.-+.++.||=-.|- ++|+...+++-...+ ++|++-=......+++.+.++ ++|.+++-=+.
T Consensus 207 ltekD~~dI-~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~--~sDGIMVARGD 283 (513)
T PTZ00066 207 IGEKDKNDI-LNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILA--ESDGIMVARGD 283 (513)
T ss_pred CCHHHHHHH-HHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHH--hcCEEEEEccc
Confidence 455544332 22334567777776764 467777777765543 677665211223445555544 58999986666
Q ss_pred ccc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCcccC-----CCCCchhHH
Q 012041 389 IGT-------VTESIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKTG-----APCRSERLA 447 (472)
Q Consensus 389 ~GG-------itea~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~g-----~~~~~e~~~ 447 (472)
.|- ..--++|++.|..+|.+|++..++.||.. +=..|+|-|. ++..+.+. +-.+-|.+.
T Consensus 284 LGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~ 363 (513)
T PTZ00066 284 LGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVN 363 (513)
T ss_pred cccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHH
Confidence 553 13346799999999999999888877743 3367888777 66666542 223456677
Q ss_pred HhhHHHH
Q 012041 448 KYNQLLR 454 (472)
Q Consensus 448 k~n~ll~ 454 (472)
..++..+
T Consensus 364 ~m~~I~~ 370 (513)
T PTZ00066 364 IMAKICF 370 (513)
T ss_pred HHHHHHH
Confidence 7777443
No 314
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=22.01 E-value=4e+02 Score=27.52 Aligned_cols=95 Identities=4% Similarity=-0.037 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHH-hhCCeeEEeCCCCcCCHHHHHHHHhhcCC---eEEe--CCccccCHHHHHHHHHcCCCCEEEeccCC
Q 012041 315 AQSLGDLYKEFV-RDFPIVSIEDPFDQDDWSSWASLQSSVDI---QLVG--DDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 315 ~~eai~~~~~~l-~~~~l~~iEdP~~~~D~~~~~~L~~~~~~---pI~~--dE~~~~~~~~~~~~i~~~a~d~i~ik~~k 388 (472)
..+++..+.+.+ ++-+-.++++|.... +....+..++ ++-. ++.+.-++.++.+.++.+.--++...++.
T Consensus 113 ~~~al~~~~~~~~~~gd~vlv~~P~y~~----~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~N 188 (412)
T PTZ00433 113 VSHAILMALTALCDEGDNILVPAPGFPH----YETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSN 188 (412)
T ss_pred hHHHHHHHHHHhcCCCCEEEEccCCccc----HHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCC
Confidence 356666555544 334578999997644 4444455552 2222 22223456788777665432233334433
Q ss_pred -ccc---HHHHHHHHHHHHHcCCcEEecC
Q 012041 389 -IGT---VTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 389 -~GG---itea~~ia~~A~a~g~~~~v~~ 413 (472)
.|. ..+..+++++|+.+|+.+++-.
T Consensus 189 PtG~~~s~~~~~~l~~~a~~~~~~ii~De 217 (412)
T PTZ00433 189 PCGSNFSRKHVEDIIRLCEELRLPLISDE 217 (412)
T ss_pred CCCcccCHHHHHHHHHHHHHcCCeEEEec
Confidence 453 5578899999999998876543
No 315
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.82 E-value=8.4e+02 Score=24.64 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHHHHhhCC---eeEE--eCCCCcCC--HHHHHHHHhhc-CCeEEeC---Cc-------cccCHHHHHHHH
Q 012041 313 LSAQSLGDLYKEFVRDFP---IVSI--EDPFDQDD--WSSWASLQSSV-DIQLVGD---DL-------LVTNPKRIAEAI 374 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~---l~~i--EdP~~~~D--~~~~~~L~~~~-~~pI~~d---E~-------~~~~~~~~~~~i 374 (472)
++.++.++.+. .+.+++ +.+. ++|....+ .+-.+.+++.. ++.+.+- |. -..+.+.++++-
T Consensus 70 ls~eeI~e~~~-~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAA-EAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHH-HHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68899888754 456666 4444 35543222 24456666654 3666541 10 012356677777
Q ss_pred HcCCCCEEE-------e----ccCCcc-cHHHHHHHHHHHHHcCCcE----EecCCCCCChh
Q 012041 375 QKKSCNGLL-------L----KVNQIG-TVTESIQAALDSKSAGWGV----MVSHRSGETED 420 (472)
Q Consensus 375 ~~~a~d~i~-------i----k~~k~G-Gitea~~ia~~A~a~g~~~----~v~~~~~Et~~ 420 (472)
+.|.-.+.. . ++++-. +..+.++.++.|++.|+.+ |+|| +|+..
T Consensus 149 eAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~--~Et~e 208 (343)
T TIGR03551 149 EAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGH--VETPE 208 (343)
T ss_pred HhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEec--CCCHH
Confidence 766433321 1 122222 5678899999999999987 4454 46643
No 316
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=21.70 E-value=4.8e+02 Score=25.12 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcEE--EEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhC--CeeEE
Q 012041 259 DNREGLVLLTDAIEKAGYTGKINI--GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF--PIVSI 334 (472)
Q Consensus 259 ~~~~~l~~v~~av~~~g~~g~i~l--~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~--~l~~i 334 (472)
+.++.++.|+.+++..... ++.| +.|+- . . .....++++++... ..+. +..|+
T Consensus 118 ~~ee~~~kI~Aa~~a~~~~-~~~I~ARTDa~----~----~-------------~~~~~deaI~R~~a-Y~eAGAD~ifi 174 (238)
T PF13714_consen 118 SPEEMVAKIRAAVDARRDP-DFVIIARTDAF----L----R-------------AEEGLDEAIERAKA-YAEAGADMIFI 174 (238)
T ss_dssp -HHHHHHHHHHHHHHHSST-TSEEEEEECHH----C----H-------------HHHHHHHHHHHHHH-HHHTT-SEEEE
T ss_pred CHHHHHHHHHHHHHhccCC-eEEEEEecccc----c----c-------------CCCCHHHHHHHHHH-HHHcCCCEEEe
Confidence 4567777787777766421 3332 23441 0 0 01246789998554 4454 48888
Q ss_pred eCCCCcCCHHHHHHHHhhcCCeEEeC
Q 012041 335 EDPFDQDDWSSWASLQSSVDIQLVGD 360 (472)
Q Consensus 335 EdP~~~~D~~~~~~L~~~~~~pI~~d 360 (472)
|-+ .+.+.++++.+.++.|+..-
T Consensus 175 ~~~---~~~~~i~~~~~~~~~Pl~v~ 197 (238)
T PF13714_consen 175 PGL---QSEEEIERIVKAVDGPLNVN 197 (238)
T ss_dssp TTS---SSHHHHHHHHHHHSSEEEEE
T ss_pred CCC---CCHHHHHHHHHhcCCCEEEE
Confidence 877 45566899999999887543
No 317
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.65 E-value=1.1e+03 Score=26.01 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=77.8
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEEeCC-----------CCcCCHHHHHHHHhhcC-CeEEe----CCc--cccCH-----H
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSIEDP-----------FDQDDWSSWASLQSSVD-IQLVG----DDL--LVTNP-----K 368 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~iEdP-----------~~~~D~~~~~~L~~~~~-~pI~~----dE~--~~~~~-----~ 368 (472)
.++.++.++. .+.+++.++..||== +.+++++.++.|++..+ +++.+ -.. +...+ .
T Consensus 17 ~~~t~dkl~i-a~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPI-AEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHH-HHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 4678888877 566889999999983 55778888999988654 55432 110 00011 2
Q ss_pred HHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCcEEec-CCCCC--ChhhH---HHHHHHhhcCCCcccCCCCC
Q 012041 369 RIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVS-HRSGE--TEDNF---IADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 369 ~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~~~v~-~~~~E--t~~s~---~a~lAva~~~~~i~~g~~~~ 442 (472)
+++..++. .+|.+.+-..-.- +.++.+.++.|+++|..+.+. +.... ..... .+.-+..+++..+.+.+..+
T Consensus 96 ~v~~a~~~-Gvd~irif~~lnd-~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G 173 (582)
T TIGR01108 96 FVKKAVEN-GMDVFRIFDALND-PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAG 173 (582)
T ss_pred HHHHHHHC-CCCEEEEEEecCc-HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 34445544 4788776543221 478888999999999887543 21111 12233 33444556788876555533
No 318
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=21.60 E-value=7.3e+02 Score=25.07 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhCCeeEEeC----CCCcCCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCC---
Q 012041 316 QSLGDLYKEFVRDFPIVSIED----PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ--- 388 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iEd----P~~~~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k--- 388 (472)
++.++.+.+++++.++.-+=- -++++.+..|-++.++.+..++.|-+ -+-+.+.++.+ ...|||++
T Consensus 117 ~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S----g~~L~~~L~~~---P~lIKPN~~EL 189 (310)
T COG1105 117 EQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS----GEALLAALEAK---PWLIKPNREEL 189 (310)
T ss_pred HHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC----hHHHHHHHccC---CcEEecCHHHH
Confidence 445666666677777766655 36667888888888888999999964 37777888766 77788864
Q ss_pred -------cccHHHHHHHHHHHHHcCCcEEecC
Q 012041 389 -------IGTVTESIQAALDSKSAGWGVMVSH 413 (472)
Q Consensus 389 -------~GGitea~~ia~~A~a~g~~~~v~~ 413 (472)
.-...+.++.++.-...|+..++-+
T Consensus 190 ~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVS 221 (310)
T COG1105 190 EALFGRELTTLEDVIKAARELLAEGIENVIVS 221 (310)
T ss_pred HHHhCCCCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 4566688888888778888876544
No 319
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=21.49 E-value=3.8e+02 Score=27.06 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 012041 346 WASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 346 ~~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~ 409 (472)
.+.+.++.. +||+.-=-...+.+.+.+.++.+ ++.|++|-+.. -=|..+++++++|+++|+.+
T Consensus 65 ~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 65 VKIMCERYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSV 131 (307)
T ss_pred HHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 320
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=21.49 E-value=3.8e+02 Score=25.24 Aligned_cols=63 Identities=5% Similarity=0.003 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCCc
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWG 408 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~~ 408 (472)
.|++.++++++.+++|+..+-- +.+.+++.++++.+ ++.+.+.- ..+.+.-.+.++.+.++-.
T Consensus 61 ~n~~~~~~i~~~~~~pv~~~gg-i~~~~d~~~~~~~G-~~~vilg~---~~l~~~~~~~~~~~~~~~~ 123 (232)
T TIGR03572 61 PLFELISNLAEECFMPLTVGGG-IRSLEDAKKLLSLG-ADKVSINT---AALENPDLIEEAARRFGSQ 123 (232)
T ss_pred CCHHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHcC-CCEEEECh---hHhcCHHHHHHHHHHcCCc
Confidence 4677788888888777644332 46788998887764 77765542 2334333455555665543
No 321
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=21.41 E-value=8.1e+02 Score=25.61 Aligned_cols=94 Identities=9% Similarity=0.105 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeCCCC---cCCHHHHHHHHhh-cCCeEEeCCccccCHHHH-HHHHHcCCCCEEEeccCC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIEDPFD---QDDWSSWASLQSS-VDIQLVGDDLLVTNPKRI-AEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEdP~~---~~D~~~~~~L~~~-~~~pI~~dE~~~~~~~~~-~~~i~~~a~d~i~ik~~k 388 (472)
+.+++++. .+.+.++...|+|=-.+ ..-.+..++|++. .+.+|..|=- +.++... .+.+..-.+|++.+-.
T Consensus 183 ~~~~A~~i-~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK-~~Di~~~vv~~~a~aGAD~vTVH~-- 258 (391)
T PRK13307 183 DLEEVERV-LSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLK-TLDTGNLEARMAADATADAVVISG-- 258 (391)
T ss_pred CHHHHHHH-HHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEec-ccChhhHHHHHHHhcCCCEEEEec--
Confidence 67888876 44566665668885533 3446777888887 3577877753 4454444 3334455689888865
Q ss_pred cccHHHHHHHHHHHHHcCCcEEe
Q 012041 389 IGTVTESIQAALDSKSAGWGVMV 411 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~~~v 411 (472)
.++.....++.+.++++|+.+++
T Consensus 259 ea~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 259 LAPISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEE
Confidence 45676688899999999999876
No 322
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=21.33 E-value=9.5e+02 Score=25.11 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhhCCeeEEeC--CCC-cCCHHHHHHHHhhcCC-eEEeCCcccc-CHHHHHHHHHcCCCCEEEeccCC
Q 012041 314 SAQSLGDLYKEFVRDFPIVSIED--PFD-QDDWSSWASLQSSVDI-QLVGDDLLVT-NPKRIAEAIQKKSCNGLLLKVNQ 388 (472)
Q Consensus 314 s~~eai~~~~~~l~~~~l~~iEd--P~~-~~D~~~~~~L~~~~~~-pI~~dE~~~~-~~~~~~~~i~~~a~d~i~ik~~k 388 (472)
+.+++++.+.. +.+.++.|||= |.. .+..+..++|++..+. .|+.|=...- ...++..+++.+ +|.+.+- ..
T Consensus 14 ~~~~~~~~~~~-~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aG-AdgV~v~-g~ 90 (430)
T PRK07028 14 ELDRAVEIAKE-AVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAG-ADIVCIL-GL 90 (430)
T ss_pred CHHHHHHHHHH-HHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcC-CCEEEEe-cC
Confidence 57788877444 45578999985 322 3345667777777653 4454411000 113666666665 5766642 11
Q ss_pred cccHHHHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 389 IGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 389 ~GGitea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
. ......++.+.|+++|+.++++-.+.++.... +..+...++.+++++
T Consensus 91 ~-~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~-~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 91 A-DDSTIEDAVRAARKYGVRLMADLINVPDPVKR-AVELEELGVDYINVH 138 (430)
T ss_pred C-ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHH-HHHHHhcCCCEEEEE
Confidence 1 11234578888999999987653233333222 344455677888754
No 323
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.27 E-value=7.6e+02 Score=23.91 Aligned_cols=123 Identities=14% Similarity=0.207 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCC--eeEEeCC
Q 012041 260 NREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDP 337 (472)
Q Consensus 260 ~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~--l~~iEdP 337 (472)
.+|+.+.++.+++.++ +++.+.+-+.+ .+.++++++ .+..++.+ -..+--|
T Consensus 49 ~~Er~~l~~~~~~~~~--~~~~vi~gv~~------------------------~~~~~~i~~-a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 49 DEERKEVIEAVVEAVA--GRVPVIAGVGA------------------------NSTREAIEL-ARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHHHHHHHhC--CCCeEEEecCC------------------------ccHHHHHHH-HHHHHHcCCCEEEECCC
Confidence 5778888877777663 46776665521 145677776 45567766 3344555
Q ss_pred CCc----CC-HHHHHHHHhhcCCeEEeCCc-----cccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHHHHHHcCC
Q 012041 338 FDQ----DD-WSSWASLQSSVDIQLVGDDL-----LVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGW 407 (472)
Q Consensus 338 ~~~----~D-~~~~~~L~~~~~~pI~~dE~-----~~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~~A~a~g~ 407 (472)
... +. ++-++++.+.+++||+.-.. ..-+++.+.++.+ .-+++-+|-+- +.+....++.+.. ..++
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~giK~s~-~d~~~~~~~~~~~-~~~~ 177 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGIKDSS-GDLDRLTRLIALL-GPDF 177 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHHHHHHHHhc-CCCe
Confidence 321 22 24457777777788864321 1124788888864 56889999875 5566666655443 2356
Q ss_pred cEEecC
Q 012041 408 GVMVSH 413 (472)
Q Consensus 408 ~~~v~~ 413 (472)
.++.|+
T Consensus 178 ~v~~G~ 183 (281)
T cd00408 178 AVLSGD 183 (281)
T ss_pred EEEEcc
Confidence 655443
No 324
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.27 E-value=3.8e+02 Score=26.04 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEecc--CC----cccHH-----HHHHHHHHHHHcCCcE
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV--NQ----IGTVT-----ESIQAALDSKSAGWGV 409 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~--~k----~GGit-----ea~~ia~~A~a~g~~~ 409 (472)
.|.+...+|.+.---.++.+-..+.+|+.++++++.-- +-+.+.+ -. +.|.. +..+.++.-+..|+.-
T Consensus 85 Rs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ 163 (241)
T COG0106 85 RSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAH 163 (241)
T ss_pred CCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCe
Confidence 46677777766322455555556778888888877655 5444433 11 22222 3445666666777776
Q ss_pred EecCCC------CCChhhHHHHHHHhhcCCCcccCCCCC
Q 012041 410 MVSHRS------GETEDNFIADLSVGLASGQIKTGAPCR 442 (472)
Q Consensus 410 ~v~~~~------~Et~~s~~a~lAva~~~~~i~~g~~~~ 442 (472)
++-|.. ...+......++-+...+.+..|+.++
T Consensus 164 ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s 202 (241)
T COG0106 164 ILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSS 202 (241)
T ss_pred EEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCC
Confidence 666632 122345677888888888888888865
No 325
>PLN02389 biotin synthase
Probab=21.26 E-value=9.3e+02 Score=24.95 Aligned_cols=110 Identities=10% Similarity=0.177 Sum_probs=62.5
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEE---e---CCCCcC-CHHHHHHHHh---hcCCeEEeCCccccCHHHHHHHHHcCCCCE
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSI---E---DPFDQD-DWSSWASLQS---SVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~i---E---dP~~~~-D~~~~~~L~~---~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~ 381 (472)
.+++++.++...+ ..+.++.-| . ....++ +++-+.++-+ ..++.|+.--- ..+.+.++++-+.| +|.
T Consensus 115 ~Ls~EeIl~~a~~-~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G-~l~~E~l~~LkeAG-ld~ 191 (379)
T PLN02389 115 LMSKDDVLEAAKR-AKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLG-MLEKEQAAQLKEAG-LTA 191 (379)
T ss_pred cCCHHHHHHHHHH-HHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCC-CCCHHHHHHHHHcC-CCE
Confidence 3689999887544 455553322 1 233321 2333333322 34565553322 23456666665554 666
Q ss_pred EEeccC----------CcccHHHHHHHHHHHHHcCCcE----EecCCCCCChhhHHHHH
Q 012041 382 LLLKVN----------QIGTVTESIQAALDSKSAGWGV----MVSHRSGETEDNFIADL 426 (472)
Q Consensus 382 i~ik~~----------k~GGitea~~ia~~A~a~g~~~----~v~~~~~Et~~s~~a~l 426 (472)
+++.+. ......+.++.++.|++.|+.+ ++|+ +|+......++
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl--gEt~edrv~~l 248 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL--GEAEEDRVGLL 248 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC--CCCHHHHHHHH
Confidence 665543 2467888999999999999987 3344 68765543333
No 326
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.25 E-value=4.1e+02 Score=27.27 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=43.9
Q ss_pred CeEE--eCCccccCHHHHHHHHHcCCCCEEEeccCCcc----------cHHHHHHHHHHHHHcCCcE--EecC
Q 012041 355 IQLV--GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIG----------TVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 355 ~pI~--~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~G----------Gitea~~ia~~A~a~g~~~--~v~~ 413 (472)
+||+ .|. ..+.+.+.+.++.+ ++.|++|-+..- =|..+++++++|+++|+.| -+||
T Consensus 76 VPValHLDH--g~~~e~i~~ai~~G-ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~ 145 (347)
T PRK09196 76 IPVVMHQDH--GNSPATCQRAIQLG-FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGC 145 (347)
T ss_pred CcEEEECCC--CCCHHHHHHHHHcC-CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 5554 454 46789999999986 799999998761 4778999999999999887 3455
No 327
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=21.24 E-value=4.3e+02 Score=26.33 Aligned_cols=66 Identities=6% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc--CCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE
Q 012041 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV 409 (472)
Q Consensus 343 ~~~~~~L~~~~--~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~ 409 (472)
......+.++. ++||+.-=-...+.+.+++.++.+ ++.|++|-+.. ==|-.+++++++|+++|+.+
T Consensus 64 ~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 64 SAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred HHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
No 328
>PRK06247 pyruvate kinase; Provisional
Probab=21.20 E-value=7.4e+02 Score=26.65 Aligned_cols=139 Identities=13% Similarity=0.217 Sum_probs=82.8
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCCCC--cCCHHHHHHHHhhcCCeEEeC-CccccCHHHHHHHHHcCCCCEEEeccCCc
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD--QDDWSSWASLQSSVDIQLVGD-DLLVTNPKRIAEAIQKKSCNGLLLKVNQI 389 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP~~--~~D~~~~~~L~~~~~~pI~~d-E~~~~~~~~~~~~i~~~a~d~i~ik~~k~ 389 (472)
+|..+..+. ++.-++++.||=-.|- ++|+...+++-.. .++|++- |. ....+.+...++. +|.+.+-.+..
T Consensus 171 ltekD~~di--~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~~-~~~iiaKIEt-~eav~nldeI~~~--~DgImVaRGDL 244 (476)
T PRK06247 171 LTEKDRADL--EFALELGVDWVALSFVQRPEDVEEVRKIIGG-RVPVMAKIEK-PQAIDRLEAIVEA--SDAIMVARGDL 244 (476)
T ss_pred CCHHHHHHH--HHHHHcCCCEEEECCCCCHHHHHHHHHHhhh-cCeEEEEECC-HHHHHhHHHHHHH--cCEEEEccchh
Confidence 455554432 2334566666666654 3555555555432 2444433 21 2234555555554 89999877655
Q ss_pred cc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCcccC-----CCCCchhHHH
Q 012041 390 GT-------VTESIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKTG-----APCRSERLAK 448 (472)
Q Consensus 390 GG-------itea~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~g-----~~~~~e~~~k 448 (472)
|- ..--.++++.|+++|.++++..++.||.. +=..|+|-|. ++..+.+. +-.+-|.+..
T Consensus 245 gve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~ 324 (476)
T PRK06247 245 GVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRT 324 (476)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHH
Confidence 42 22346788899999999999888877743 2367887777 66666543 3345577777
Q ss_pred hhHHHHHHH
Q 012041 449 YNQLLRIEE 457 (472)
Q Consensus 449 ~n~ll~i~~ 457 (472)
.++..+-.|
T Consensus 325 m~~I~~~aE 333 (476)
T PRK06247 325 MARIIRQVE 333 (476)
T ss_pred HHHHHHHHh
Confidence 777544433
No 329
>PRK05826 pyruvate kinase; Provisional
Probab=20.93 E-value=6.9e+02 Score=26.76 Aligned_cols=137 Identities=13% Similarity=0.178 Sum_probs=81.0
Q ss_pred cCHHHHHHHHHHHHhhCCeeEEeCCCC--cCCHHHHHHHHhhcC---CeEEe-CCccccCHHHHHHHHHcCCCCEEEecc
Q 012041 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD--QDDWSSWASLQSSVD---IQLVG-DDLLVTNPKRIAEAIQKKSCNGLLLKV 386 (472)
Q Consensus 313 ~s~~eai~~~~~~l~~~~l~~iEdP~~--~~D~~~~~~L~~~~~---~pI~~-dE~~~~~~~~~~~~i~~~a~d~i~ik~ 386 (472)
+|..+.-+. ...+ +.++.||==|+- ++|....+++.+..+ +.|++ =|. ....+.+.+.++. +|++.+-.
T Consensus 171 lte~D~~~i-~~al-d~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt-~eav~nldeI~~~--~DgImIgr 245 (465)
T PRK05826 171 LTEKDKADI-KFAA-EQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIER-AEAVDNIDEIIEA--SDGIMVAR 245 (465)
T ss_pred CChhhHHHH-HHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcC-HHHHHhHHHHHHH--cCEEEECc
Confidence 344443332 4433 578888888975 356666655554432 33332 232 2234555555554 99999766
Q ss_pred CCccc-------HHHHHHHHHHHHHcCCcEEecCCCCCChh-------hHHHHHHHhh--cCCCcccC-----CCCCchh
Q 012041 387 NQIGT-------VTESIQAALDSKSAGWGVMVSHRSGETED-------NFIADLSVGL--ASGQIKTG-----APCRSER 445 (472)
Q Consensus 387 ~k~GG-------itea~~ia~~A~a~g~~~~v~~~~~Et~~-------s~~a~lAva~--~~~~i~~g-----~~~~~e~ 445 (472)
+..|. ..-..++++.|+++|.++++..++.|+.. +=..|+|-|. ++..+.+. +-.+-|.
T Consensus 246 gDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPvea 325 (465)
T PRK05826 246 GDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEA 325 (465)
T ss_pred chhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHH
Confidence 54432 23346788899999999988877666632 3367777776 66655543 2334566
Q ss_pred HHHhhHHHH
Q 012041 446 LAKYNQLLR 454 (472)
Q Consensus 446 ~~k~n~ll~ 454 (472)
+...++..+
T Consensus 326 V~~m~~I~~ 334 (465)
T PRK05826 326 VEAMARICK 334 (465)
T ss_pred HHHHHHHHH
Confidence 666666443
No 330
>PRK05965 hypothetical protein; Provisional
Probab=20.88 E-value=1.9e+02 Score=30.72 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=24.7
Q ss_pred EEeCCCC---------cCCHHHHHHHHhhcCCeEEeCCccccC
Q 012041 333 SIEDPFD---------QDDWSSWASLQSSVDIQLVGDDLLVTN 366 (472)
Q Consensus 333 ~iEdP~~---------~~D~~~~~~L~~~~~~pI~~dE~~~~~ 366 (472)
+|-||+. ++=+..+++|+++.++.++.||. .|.
T Consensus 219 vIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV-~tG 260 (459)
T PRK05965 219 FFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEV-ITG 260 (459)
T ss_pred EEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEech-hcc
Confidence 5667763 34457888888899999999996 454
No 331
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=20.86 E-value=8.1e+02 Score=24.09 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEecccccccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCC--eeEEeCC
Q 012041 260 NREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDP 337 (472)
Q Consensus 260 ~~~~l~~v~~av~~~g~~g~i~l~vD~~a~~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~--l~~iEdP 337 (472)
.+|+.+.++.+++.+. |++.+.+-+.+ .+.++++++ .+..++.+ -..+--|
T Consensus 56 ~eEr~~~~~~~~~~~~--~~~~viagvg~------------------------~~t~~ai~~-a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 56 TEEKKQVLEIVAEEAK--GKVKLIAQVGS------------------------VNTAEAQEL-AKYATELGYDAISAVTP 108 (293)
T ss_pred HHHHHHHHHHHHHHhC--CCCCEEecCCC------------------------CCHHHHHHH-HHHHHHcCCCEEEEeCC
Confidence 5788888887887663 46666655521 256778776 44566665 3445556
Q ss_pred CC--c--CC-HHHHHHHHhhcCCeEEeCCcc-----ccCHHHHHHHHHcCCCCEEEeccCCcccHHHHHHHHH
Q 012041 338 FD--Q--DD-WSSWASLQSSVDIQLVGDDLL-----VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAAL 400 (472)
Q Consensus 338 ~~--~--~D-~~~~~~L~~~~~~pI~~dE~~-----~~~~~~~~~~i~~~a~d~i~ik~~k~GGitea~~ia~ 400 (472)
.. + +. ++-++++.+.+++||+.-..- .-+++-+.++.+ .-+++-+|-+ .|-+....++.+
T Consensus 109 ~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~--~pnvvgiK~s-~~d~~~~~~~~~ 178 (293)
T PRK04147 109 FYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT--LPKVIGVKQT-AGDLYQLERIRK 178 (293)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc--CCCEEEEEeC-CCCHHHHHHHHH
Confidence 42 1 12 234677778888887765421 114677777763 4588888886 455666555543
No 332
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=20.75 E-value=6.6e+02 Score=25.66 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=54.7
Q ss_pred CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc--------HHHHHHHHHHHHHc--CCcEE
Q 012041 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT--------VTESIQAALDSKSA--GWGVM 410 (472)
Q Consensus 341 ~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG--------itea~~ia~~A~a~--g~~~~ 410 (472)
.+++..++|++.+++||+.-+. .++++++.+.+.+ +|.|.+. ++-|+ +.-..++.+..++. .++++
T Consensus 200 ~~~~~i~~l~~~~~~PvivKgv--~~~~dA~~a~~~G-~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi 275 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLKGV--QTVEDAVLAAEYG-VDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVY 275 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEEcC--CCHHHHHHHHHcC-CCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEE
Confidence 4788899999999999988884 5688888887665 6766653 22222 22233344433333 37765
Q ss_pred ecCCCCCChhhHHHHHHHhhcCCCcccCCC
Q 012041 411 VSHRSGETEDNFIADLSVGLASGQIKTGAP 440 (472)
Q Consensus 411 v~~~~~Et~~s~~a~lAva~~~~~i~~g~~ 440 (472)
..+ ...++...+- ++++|+..+.+|-+
T Consensus 276 ~~G-GIr~G~Dv~k--alaLGA~aV~iG~~ 302 (344)
T cd02922 276 VDG-GVRRGTDVLK--ALCLGAKAVGLGRP 302 (344)
T ss_pred EeC-CCCCHHHHHH--HHHcCCCEEEECHH
Confidence 544 2333333333 44555666655543
No 333
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.70 E-value=4.5e+02 Score=26.90 Aligned_cols=67 Identities=3% Similarity=0.007 Sum_probs=48.1
Q ss_pred HHHhhcCCeEEeCCcccc--CHHHHHHHHHcCC----------CCEEEeccCCcc---cHHHHHHHHHHHHHcCCcE--E
Q 012041 348 SLQSSVDIQLVGDDLLVT--NPKRIAEAIQKKS----------CNGLLLKVNQIG---TVTESIQAALDSKSAGWGV--M 410 (472)
Q Consensus 348 ~L~~~~~~pI~~dE~~~~--~~~~~~~~i~~~a----------~d~i~ik~~k~G---Gitea~~ia~~A~a~g~~~--~ 410 (472)
.+.++.++||+.-=-.+. +.+.+.++|+.+. ++.+++|-+..- =|..+++++++|++.|+.+ -
T Consensus 79 ~~A~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaE 158 (340)
T cd00453 79 QMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIE 158 (340)
T ss_pred HHHHHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 344455677654332355 7899999999984 899999987642 3566889999999999887 3
Q ss_pred ecCC
Q 012041 411 VSHR 414 (472)
Q Consensus 411 v~~~ 414 (472)
+||.
T Consensus 159 lG~i 162 (340)
T cd00453 159 LGCT 162 (340)
T ss_pred EEec
Confidence 4553
No 334
>PRK07360 FO synthase subunit 2; Reviewed
Probab=20.51 E-value=9.3e+02 Score=24.69 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=60.7
Q ss_pred ccCHHHHHHHHHHHHhhCCeeEE-----eCCCCcCCH----HHHHHHHhhcC-CeEEe-------------CCccccCHH
Q 012041 312 VLSAQSLGDLYKEFVRDFPIVSI-----EDPFDQDDW----SSWASLQSSVD-IQLVG-------------DDLLVTNPK 368 (472)
Q Consensus 312 ~~s~~eai~~~~~~l~~~~l~~i-----EdP~~~~D~----~~~~~L~~~~~-~pI~~-------------dE~~~~~~~ 368 (472)
.++.+|.++.. +...++++..| +.|... ++ +..+++++.++ +.|.+ +.+ ..+
T Consensus 90 ~ls~eeI~~~a-~~a~~~G~~~i~l~~G~~p~~~-~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~---~~e 164 (371)
T PRK07360 90 WLTIAEILEKA-AEAVKRGATEVCIQGGLHPAAD-SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLS---YEE 164 (371)
T ss_pred eCCHHHHHHHH-HHHHhCCCCEEEEccCCCCCCC-cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCC---HHH
Confidence 36888888774 44666663322 566543 12 45566666654 66654 332 235
Q ss_pred HHHHHHHcCCCCEE-------------EeccCCcccHHHHHHHHHHHHHcCCcE----EecCCCCCChhhH
Q 012041 369 RIAEAIQKKSCNGL-------------LLKVNQIGTVTESIQAALDSKSAGWGV----MVSHRSGETEDNF 422 (472)
Q Consensus 369 ~~~~~i~~~a~d~i-------------~ik~~k~GGitea~~ia~~A~a~g~~~----~v~~~~~Et~~s~ 422 (472)
.++++-+.|.-.+. .+.+.++ ...+.+++++.|++.|+++ ++|| +|+....
T Consensus 165 ~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~-s~~~~l~~i~~a~~~Gl~~~sg~i~G~--gEt~edr 232 (371)
T PRK07360 165 VLKALKDAGLDSMPGTAAEILVDEVRRIICPEKI-KTAEWIEIVKTAHKLGLPTTSTMMYGH--VETPEHR 232 (371)
T ss_pred HHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCCceeeEEeeC--CCCHHHH
Confidence 56667666543332 1233344 4568899999999999976 3444 6775443
No 335
>PRK11059 regulatory protein CsrD; Provisional
Probab=20.37 E-value=1.1e+03 Score=25.91 Aligned_cols=111 Identities=7% Similarity=-0.047 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhC-----CeeEEeCCC--CcCCHHHHHHHHh---hcCCeEEeCCccccCHHHHHHHHHcCCCCEEEeccC
Q 012041 318 LGDLYKEFVRDF-----PIVSIEDPF--DQDDWSSWASLQS---SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (472)
Q Consensus 318 ai~~~~~~l~~~-----~l~~iEdP~--~~~D~~~~~~L~~---~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (472)
..+.+...+.++ .-.+||=+= ...+.+....+.+ +.|+.|+-|+. -++...+..+ ..--+|+|.+|.+
T Consensus 500 f~~~l~~~l~~~~~~~~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~~iaiddf-G~g~~s~~~L-~~l~~d~iKid~s 577 (640)
T PRK11059 500 FQRWLRDTLLQCPRSQRKRLIFELAEADVCQHISRLRPVLRMLRGLGCRLAVDQA-GLTVVSTSYI-KELNVELIKLHPS 577 (640)
T ss_pred HHHHHHHHHHhcCCCCcceEEEEEechhhhcCHHHHHHHHHHHHHCCCEEEEECC-CCCcccHHHH-HhCCCCEEEECHH
Confidence 333445555555 224444332 2345555555543 45799999984 5555555443 3445999999876
Q ss_pred CcccHH-------HHHHHHHHHHHcCCcEEecCCCCCChhhHHHHHHHhhcCCC
Q 012041 388 QIGTVT-------ESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQ 434 (472)
Q Consensus 388 k~GGit-------ea~~ia~~A~a~g~~~~v~~~~~Et~~s~~a~lAva~~~~~ 434 (472)
-+-.+. =...++.+|+..|+.++..+ .|+... ......+++..
T Consensus 578 ~v~~i~~~~~~~~~v~sli~~a~~~~i~viAeg--VEt~~~--~~~l~~lGvd~ 627 (640)
T PRK11059 578 LVRNIHKRTENQLFVRSLVGACAGTETQVFATG--VESREE--WQTLQELGVSG 627 (640)
T ss_pred HHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEE--eCCHHH--HHHHHHhCCCe
Confidence 554443 25678899999999987655 466443 23333444433
No 336
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=20.21 E-value=4.6e+02 Score=24.90 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCCCCcEEEEecccc-cccccCcceeecCCCCCCCCCCccCHHHHHHHHHHHHhhCCee-EEeCCCCc---
Q 012041 266 LLTDAIEKAGYTGKINIGMDVAAS-EFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIV-SIEDPFDQ--- 340 (472)
Q Consensus 266 ~v~~av~~~g~~g~i~l~vD~~a~-~~~~~~~~y~~~~~~~~~~~n~~~s~~eai~~~~~~l~~~~l~-~iEdP~~~--- 340 (472)
.+.+..+..|. ..+.+.+|+..+ ..+.+ ++ . .....++.++++. +.++++. +|=--+..
T Consensus 111 ~l~~~~~~~g~-~~ivvslD~~~g~~v~~~-gw-~---------~~~~~~~~~~~~~----~~~~g~~~ii~tdi~~dGt 174 (229)
T PF00977_consen 111 LLEELAERYGS-QRIVVSLDARDGYKVATN-GW-Q---------ESSGIDLEEFAKR----LEELGAGEIILTDIDRDGT 174 (229)
T ss_dssp HHHHHHHHHGG-GGEEEEEEEEETEEEEET-TT-T---------EEEEEEHHHHHHH----HHHTT-SEEEEEETTTTTT
T ss_pred HHHHHHHHcCc-ccEEEEEEeeeceEEEec-Cc-c---------ccCCcCHHHHHHH----HHhcCCcEEEEeeccccCC
Confidence 34555554441 169999999543 22222 11 0 0113456665433 4455522 23333333
Q ss_pred ---CCHHHHHHHHhhcCCeEEeCCccccCHHHHHHHHHcCCCCEEE
Q 012041 341 ---DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLL 383 (472)
Q Consensus 341 ---~D~~~~~~L~~~~~~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ 383 (472)
-|++.+++|++.+++|+++.-= +.+.+|+.++.+.+. +.+.
T Consensus 175 ~~G~d~~~~~~l~~~~~~~viasGG-v~~~~Dl~~l~~~G~-~gvi 218 (229)
T PF00977_consen 175 MQGPDLELLKQLAEAVNIPVIASGG-VRSLEDLRELKKAGI-DGVI 218 (229)
T ss_dssp SSS--HHHHHHHHHHHSSEEEEESS---SHHHHHHHHHTTE-CEEE
T ss_pred cCCCCHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHHHCCC-cEEE
Confidence 3889999999999988744432 568999999987776 5444
No 337
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=20.18 E-value=4.7e+02 Score=26.56 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=46.8
Q ss_pred HHHHhhc--CCeEE--eCCccccCHHHHHHHHHcCCCCEEEeccCCc---ccHHHHHHHHHHHHHcCCcE--EecC
Q 012041 347 ASLQSSV--DIQLV--GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQI---GTVTESIQAALDSKSAGWGV--MVSH 413 (472)
Q Consensus 347 ~~L~~~~--~~pI~--~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~---GGitea~~ia~~A~a~g~~~--~v~~ 413 (472)
..+.++. ++||+ .|. ..+.+.+.+.++.+ ++.|++|-+.. -=|..+++++++|+++|+.| -+||
T Consensus 76 ~~~a~~a~~~VPV~lHLDH--g~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~ 148 (321)
T PRK07084 76 VEYAKELGCPIPIVLHLDH--GDSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGV 148 (321)
T ss_pred HHHHHHcCCCCcEEEECCC--CCCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 3445544 46654 454 46789999999986 68999998765 23667899999999999887 3455
No 338
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=20.14 E-value=5.6e+02 Score=25.38 Aligned_cols=62 Identities=8% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHhhcC-CeEEeCCccccCHHHHHHHHHcCCCCEEEeccCCccc---HHHHHHHHHHHHHcCCcE
Q 012041 347 ASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT---VTESIQAALDSKSAGWGV 409 (472)
Q Consensus 347 ~~L~~~~~-~pI~~dE~~~~~~~~~~~~i~~~a~d~i~ik~~k~GG---itea~~ia~~A~a~g~~~ 409 (472)
..++++.+ +||+.-=-...+.+.+++.++.+ ++.|++|-....- +..++++.++|+.+|+.+
T Consensus 66 ~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~V 131 (282)
T TIGR01859 66 KTLIERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSV 131 (282)
T ss_pred HHHHHHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 44455555 66654411234677788888765 7888988877642 334677888899998876
No 339
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=20.10 E-value=3.9e+02 Score=24.63 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHcCCCCEEEecc----CCcccHHHHHHHHHHHHH--cCCcEEecCCCCCChhhHHHHHHHhhcCCCcccC
Q 012041 365 TNPKRIAEAIQKKSCNGLLLKV----NQIGTVTESIQAALDSKS--AGWGVMVSHRSGETEDNFIADLSVGLASGQIKTG 438 (472)
Q Consensus 365 ~~~~~~~~~i~~~a~d~i~ik~----~k~GGitea~~ia~~A~a--~g~~~~v~~~~~Et~~s~~a~lAva~~~~~i~~g 438 (472)
+++++++.+++.+ +|++++-. .+.=....++++.+.+.. .++.+++..+ ...+.+++..+++..+.++
T Consensus 7 ~~~ed~~~a~~~G-vd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~-----~~~i~~ia~~~~~d~Vqlh 80 (203)
T cd00405 7 TTLEDALAAAEAG-ADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNED-----LEEILEIAEELGLDVVQLH 80 (203)
T ss_pred CCHHHHHHHHHcC-CCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC-----HHHHHHHHHhcCCCEEEEC
Confidence 4567777776555 67777643 233346677777777766 5555544332 3345566666677777666
Q ss_pred CC
Q 012041 439 AP 440 (472)
Q Consensus 439 ~~ 440 (472)
+-
T Consensus 81 g~ 82 (203)
T cd00405 81 GD 82 (203)
T ss_pred CC
Confidence 54
No 340
>PRK06855 aminotransferase; Validated
Probab=20.10 E-value=8.2e+02 Score=25.48 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhCCeeEEeCCCCcCCHHHHHHHHhhcC-CeEEeC--CccccCHHHHHHHHHcC-CCC-EEEeccC---
Q 012041 316 QSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGD--DLLVTNPKRIAEAIQKK-SCN-GLLLKVN--- 387 (472)
Q Consensus 316 ~eai~~~~~~l~~~~l~~iEdP~~~~D~~~~~~L~~~~~-~pI~~d--E~~~~~~~~~~~~i~~~-a~d-~i~ik~~--- 387 (472)
.+++..+..++++-+-.++|+|..+. +.....+..... +++-.+ +-+.-+++++.+.++.. ... ++...++
T Consensus 106 ~~al~~~~~l~~~Gd~Vlv~~P~Y~~-~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPT 184 (433)
T PRK06855 106 GDAIAKIYGLLRREARVIGPSPAYST-HSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPT 184 (433)
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCch-HHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCC
Confidence 45665544555555688999998875 332222221221 233222 22334678888887632 233 3333332
Q ss_pred -CcccHHHHHHHHHHHHHcCCcEEe
Q 012041 388 -QIGTVTESIQAALDSKSAGWGVMV 411 (472)
Q Consensus 388 -k~GGitea~~ia~~A~a~g~~~~v 411 (472)
.+=...+..+++++|+.+++.++.
T Consensus 185 G~~~s~~~~~~l~~~a~~~~~~II~ 209 (433)
T PRK06855 185 GAVYPKEILREIVDIAREYDLFIIC 209 (433)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334456778899999999988753
Done!