RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012041
(472 letters)
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 866 bits (2239), Expect = 0.0
Identities = 328/438 (74%), Positives = 376/438 (85%), Gaps = 3/438 (0%)
Query: 37 ASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGD 95
+ A + VKARQIIDSRGNPTVEVDL T +FR+AVPSGASTGIYEALELRDGD
Sbjct: 19 HLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGD 78
Query: 96 KSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVS 155
K Y GKGVL AVKN+N+I+ P L+G+D DQ ++D MLE+DGTPNK K+GANAIL VS
Sbjct: 79 KD-YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVS 137
Query: 156 LSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA 215
L+VC+AGA KGVPLYKHI +L+G K+LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA
Sbjct: 138 LAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 197
Query: 216 TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275
+SF EA++MGSEVYH LK +IK+KYGQDACNVGDEGGFAPN+QDN+EGL LL +AIEKAG
Sbjct: 198 SSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAG 257
Query: 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
YTGKI IGMDVAASEF+TKD YDL+FK++ NDG++ S L DLYKEFV D+PIVSIE
Sbjct: 258 YTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIE 317
Query: 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTES 395
DPFDQDDW WA L S D+Q+VGDDLLVTNPKR+A+AIQ+K+CN LLLKVNQIGTVTES
Sbjct: 318 DPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTES 377
Query: 396 IQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRI 455
I+A SK+AGWGVM SHRSGETED+FIADL+VGLA+GQIKTGAPCRSERLAKYNQLLRI
Sbjct: 378 IEAVKMSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRI 437
Query: 456 EEELGN-VRYAGQDFRSP 472
EEELG+ YAG++FR P
Sbjct: 438 EEELGDEAVYAGENFRKP 455
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 738 bits (1906), Expect = 0.0
Identities = 292/434 (67%), Positives = 353/434 (81%), Gaps = 13/434 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
+KS+KAR+I+DSRGNPTVEVDL T+ +FR+AVPSGASTGIYEALELRDGDKS Y GKGV
Sbjct: 4 IKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 63
Query: 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSLSV 158
L AV+N+N+I+ P L+G D+ DQ ++D +M+E +DGT N KSK+GANAIL VS++V
Sbjct: 64 LKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAV 123
Query: 159 CRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGAT 216
RA A AKGVPLYK++ +L+G T + V+PVP FNVINGG HAGN LA QEFMI PVGA
Sbjct: 124 ARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAP 183
Query: 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGY 276
SF EALRMG+EVYH LK +IK+KYG DA NVGDEGGFAPN++D E L LL +AI+KAGY
Sbjct: 184 SFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKAGY 243
Query: 277 TGKINIGMDVAASEFFTKDGN-YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
GK+ I MDVAASEF+ K+ YDL+FK ND ++ L+ + L +LY + V+ +PIVSIE
Sbjct: 244 EGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIE 303
Query: 336 DPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVT 393
DPFDQDDW ++A L +++ +Q+VGDDLLVTNP RI +AI+KK+CN LLLKVNQIGTVT
Sbjct: 304 DPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT 363
Query: 394 ESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLL 453
E+I+AA ++ GWGVMVSHRSGETED FIADL VGL +GQIKTGAPCRSERLAKYNQLL
Sbjct: 364 EAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLL 423
Query: 454 RIEEELG-NVRYAG 466
RIEEELG N YAG
Sbjct: 424 RIEEELGSNAVYAG 437
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 732 bits (1893), Expect = 0.0
Identities = 260/417 (62%), Positives = 326/417 (78%), Gaps = 15/417 (3%)
Query: 48 SVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGGKGVL 105
+KAR+I+DSRGNPTVEV++ T+D + R+AVPSGASTG +EA+ELRDGDKS Y GKGVL
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 106 NAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGA 165
AVKN+N+I+ P L+G+D+ DQ +D +++E+DGTPNKSK+GANAILGVSL+V +A A A
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAA 120
Query: 166 KGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMG 225
G+PLY+++ G V+PVP FNVINGG+HAGN L QEFMI+PVGA SF+EALRMG
Sbjct: 121 LGLPLYRYL---GGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSEALRMG 177
Query: 226 SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG--KINIG 283
+EVYH LK ++K+K G A NVGDEGGFAPN+ N E L LL +AIEKAGY KI I
Sbjct: 178 AEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237
Query: 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343
+DVAASEF+ +G Y + +D L+++ L D YKE V+ +PIVSIEDPFD+DDW
Sbjct: 238 LDVAASEFY-DEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDW 291
Query: 344 SSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALD 401
WA L + + IQ+VGDDL VTNP+R+ + I+KK+ N LL+KVNQIGT+TE+I+A
Sbjct: 292 EGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKL 351
Query: 402 SKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEE 458
+K G+GV+VSHRSGETED FIADL+V L +GQIKTGAPCRSER AKYNQLLRIEEE
Sbjct: 352 AKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRIEEE 408
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 664 bits (1715), Expect = 0.0
Identities = 243/430 (56%), Positives = 316/430 (73%), Gaps = 21/430 (4%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGG 101
+K++ + AR+I+DSRGNPTVEV++ +D R+AVPSGASTG EA+ELRDGDKS Y G
Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV+N+N+ + P L+G+D DQ +D M+E+DGTPNKSK+GANAILGVSL+V +A
Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A + G+PLY++ L G V+PVP N+INGG+HA NN+ +QEFMI+PVGA SF EA
Sbjct: 122 AADSLGLPLYRY---LGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEA 178
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LRMG+EV+H LK ++KEK G + VGDEGGFAPN++ N E L L+ +AIEKAGY G+
Sbjct: 179 LRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
I + +D AASEF+ KDG Y L +G L+++ + D E V +PIVSIED D
Sbjct: 237 IALALDCAASEFY-KDGKYVL-------EGE-GLTSEEMIDYLAELVDKYPIVSIEDGLD 287
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQ 397
++DW W L + +QLVGDDL VTN KR+ + I+K + N +L+KVNQIGT+TE++
Sbjct: 288 ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLD 347
Query: 398 AALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEE 457
A +K AG+ +VSHRSGETED IADL+V +GQIKTG+ RSER+AKYNQLLRIEE
Sbjct: 348 AIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEE 407
Query: 458 ELGNV-RYAG 466
ELG+ RYAG
Sbjct: 408 ELGDAARYAG 417
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 598 bits (1543), Expect = 0.0
Identities = 239/428 (55%), Positives = 315/428 (73%), Gaps = 22/428 (5%)
Query: 49 VKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106
V AR+I+DSRGNPTVEV++ +D F R+AVPSGASTG +EA+ELRDGD Y GKGVL
Sbjct: 7 VIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSR-YLGKGVLK 65
Query: 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAK 166
AV N+N+I+ P L+G+D DQA +D++++E+DGT NKSK+GANAILGVSL+V +A A +
Sbjct: 66 AVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASL 125
Query: 167 GVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS 226
G+PLY+++ G LV+PVP NVINGG+HA NNL +QEFMI+PVGA SF EALR G+
Sbjct: 126 GIPLYRYL---GGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGA 182
Query: 227 EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK--INIGM 284
EV+H LK ++KEK + VGDEGGFAPN++ N E L +L +AIE+AGY I + +
Sbjct: 183 EVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALAL 240
Query: 285 DVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344
DVAASEF+ KDG Y L + L+++ L + Y E V+ +PIVSIEDP +DDW
Sbjct: 241 DVAASEFY-KDGKYVLEGES--------LTSEELIEYYLELVKKYPIVSIEDPLSEDDWE 291
Query: 345 SWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDS 402
+A L + +Q+VGDDL VTNPKR+ + I+K + N +L+K NQIGT+TE+++A +
Sbjct: 292 GFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLA 351
Query: 403 KSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGNV 462
K AG+ ++SHRSGETED IADL+V +GQIKTG+ RSER+AKYN+LLRIEEELG+
Sbjct: 352 KDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELGDK 411
Query: 463 -RYAGQDF 469
RYAG
Sbjct: 412 ARYAGIKE 419
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 569 bits (1468), Expect = 0.0
Identities = 234/435 (53%), Positives = 314/435 (72%), Gaps = 19/435 (4%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGGKG 103
+ ++AR+I+DSRGNPTVEV++I +D R+AVPSGASTG EALELRDGDK Y GKG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
VL AV+N+N+I+ P+L+G+D DQ E+D I++E+DGTPNKSK+GANAILGVS++V +A A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAA 120
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
+ G+PLY++ L G V+PVP N+INGG+HA NNL QEFMI+PVGA SF EALR
Sbjct: 121 DSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPSFREALR 177
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK-IN 281
MG+EV+H LK ++KEK A VGDEGGFAPN+ N E L ++ +AIEKAGY G+ +
Sbjct: 178 MGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGYKPGEDVA 235
Query: 282 IGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
+ +D AASEF+ +DG Y + + L+++ + + Y+E V +PI+SIED +
Sbjct: 236 LALDCAASEFYDEEDGKYVYKGENKQ------LTSEEMIEYYEELVEKYPIISIEDGLSE 289
Query: 341 DDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQA 398
+DW WA L + +Q+VGDDL VTN + + E I+ N +L+K NQIGT+TE++ A
Sbjct: 290 EDWEGWAELTKRLGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDA 349
Query: 399 ALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEE 458
+K AG+ ++SHRSGETED IADL+V +GQIKTG+ RSER+AKYNQLLRIEEE
Sbjct: 350 IELAKKAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEE 409
Query: 459 LGNV-RYAGQDFRSP 472
LG+ RYAG++
Sbjct: 410 LGDSARYAGKNSFYR 424
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 525 bits (1354), Expect = 0.0
Identities = 209/295 (70%), Positives = 243/295 (82%), Gaps = 4/295 (1%)
Query: 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYG 241
V+PVP NVINGGSHAGN LAMQEFMILP GA+SF EA+RMGSEVYH LK +IK KYG
Sbjct: 1 PYVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYG 60
Query: 242 QDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDL 300
QDA NVGDEGGFAPN+Q N+E L L+ +AIEKAGYTGK+ I MDVA+SEF+ KDG YDL
Sbjct: 61 QDATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDL 120
Query: 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLV 358
+FK +D + L++ L DLYKE ++ +PIVSIEDPFD+DDW +W L +S+ IQ+V
Sbjct: 121 DFKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIV 180
Query: 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGET 418
GDDL VTNPKRIA+AI+KK+CN LLLKVNQIG+VTES+ A +K AGWGVMVSHRSGET
Sbjct: 181 GDDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHRSGET 240
Query: 419 EDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG-NVRYAGQDFRSP 472
ED FIADL VGL +GQIKTGAPCRSERLAKYNQLLRIEEELG +YAG++FR P
Sbjct: 241 EDTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRNFRKP 295
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 236 bits (605), Expect = 4e-77
Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGGK 102
+ + AR+I+DSRGNPTVEV++ +D R+AVPSGASTG +EA+ELRDGDKS YGGK
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 103 GVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
GVL AV+N+N+I+ P L+G+D RDQ +D ++E+DGTPNKSK+GANAIL VSL+V +A
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAA 120
Query: 163 AGAKGVPLYKHI 174
A A G+PLY+++
Sbjct: 121 AAALGLPLYRYL 132
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 85.1 bits (211), Expect = 7e-19
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 308 DGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNP 367
D + + L + + + + IE+P DD +A+L+ I + D+ + T
Sbjct: 100 DANGAWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESVTTVD 158
Query: 368 KRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSG-ETEDNFIADL 426
EA++ + + L +K ++G +TES +AA +++ G VMV L
Sbjct: 159 DA-LEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHL 217
Query: 427 SVGL 430
+ L
Sbjct: 218 AAAL 221
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 84.1 bits (208), Expect = 8e-18
Identities = 108/419 (25%), Positives = 175/419 (41%), Gaps = 95/419 (22%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDDLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++++ R + G +VEVD+ITD F R A P + +Y A R
Sbjct: 4 IENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPIDENPSLYIAEAHR------------ 51
Query: 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAG 164
AV +++I+GP+L+G D +Q +D+ + EIDGT + S IGAN L VS++V +A A
Sbjct: 52 --AVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAAN 109
Query: 165 AKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRM 224
+K +PLY +I GG+ LPV FAE
Sbjct: 110 SKNMPLYSYI--------------------GGTFTTE---------LPVPILEFAEDENF 140
Query: 225 GSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVL--LTDAIEKAGYTGKINI 282
E Y +++ +++ DA N + +N + + L L+ A EKAG +
Sbjct: 141 --EYYVLVRDLMEITDVVDAVN---------KILENSKEVSLEGLSKASEKAG----DEL 185
Query: 283 GMDVAASEFFTKDGNYDLNFK-KQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341
G++VA L K+ + VL V D I I+ D++
Sbjct: 186 GLEVA------------LGIAQKREMETEKVL----------NLVEDNNIAYIKPIGDEE 223
Query: 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALD 401
+ + V I G+ L T + ++ N L +K +GT+T+ D
Sbjct: 224 LFLELIAGTHGVFID--GEYLFRTR-----NILDRRYYNALSIKPINLGTLTDLYNLVND 276
Query: 402 SKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG 460
KS +++ E+ D + L+VGL + + + K N+L RI E+LG
Sbjct: 277 VKSERITPILAEAKYESADEALPHLAVGLRCPAMLI----HKDSVEKINELNRIAEDLG 331
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 37.4 bits (87), Expect = 0.013
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 334 IEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVT 393
IE+P DD L+++ + + V ++ + + + + ++G +T
Sbjct: 219 IEEPLPPDDLEGLRELRAATSTPIAAGES-VYTRWDFRRLLEAGAVDIVQPDLARVGGIT 277
Query: 394 ESIQAALDSKSAGWGVMVS 412
E+++ A + + G+GVMV
Sbjct: 278 EALKIA--ALAEGFGVMVG 294
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like
protein (AP-like), stonin-1 (also called Stoned B-like
factor). A small family of proteins named stonins has
been characterized as clathrin-dependent AP-2 mu2 chain
related factors, which may act as cargo-specific sorting
adaptors in endocytosis. Stonins include stonin 1 and
stonin 2, which are the only mammalian homologs of
Drosophila stoned B, a presynaptic protein implicated in
neurotransmission and synaptic vesicle (SV) recycling.
They are conserved from C. elegans to humans, but are
not found in prokaryotes or yeasts. This family
corresponds to the mu homology domain of stonin 1, which
is distantly related to the C-terminal domain of mu
chains among AP complexes. Due to the low degree of
sequence conservation of the corresponding binding site,
the mu homology domain of stonin-1 is unable to
recognize tyrosine-based endocytic sorting signals. To
data, little is known about the localization and
function of stonin-1.
Length = 309
Score = 36.7 bits (85), Expect = 0.017
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 14 FSSKLK----QSTPPRSYRPMRVQCSVASTASSSAKVKSV 49
S KL+ Q P Y V+ V T +S +VKS+
Sbjct: 249 LSCKLELGSDQEIPSDWYPFATVEFEVEDTCASGTRVKSL 288
>gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup
of the enolase superfamily. Enzymes of this subgroup
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and residues that can
function as general acid/base catalysts, a Lys-X-Lys
motif and another conserved lysine. Despite these
conserved residues, the members of the MLE subgroup,
like muconate lactonizing enzyme, o-succinylbenzoate
synthase (OSBS) and N-acylamino acid racemase (NAAAR),
catalyze different reactions.
Length = 265
Score = 33.9 bits (78), Expect = 0.12
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ D + +E P DD A+L + D ++ D+ T P + + + + +K
Sbjct: 152 LEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFT-PHDAFRELALGAADAVNIK 210
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVS 412
+ G +T++ + +++ G VMV
Sbjct: 211 TAKTGGLTKAQRVLAVAEALGLPVMVG 237
>gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building blocks for
antibiotics, herbicides, and drugs. NAAAR is a member of
the enolase superfamily, characterized by the presence
of an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 354
Score = 33.4 bits (77), Expect = 0.23
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQS--SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
++ ++ IE P DD A LQ I L D + + + +AI+ +C + +K
Sbjct: 202 EYGLLMIEQPLAADDLIDHAELQKLLKTPICL---DESIQSAEDARKAIELGACKIINIK 258
Query: 386 VNQIGTVTESIQAA 399
++G +TE+++
Sbjct: 259 PGRVGGLTEALKIH 272
>gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional.
Length = 518
Score = 33.7 bits (77), Expect = 0.23
Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 20/199 (10%)
Query: 26 SYRPMRVQCSVA---STASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGAS 82
P R + +A S +++++ +++ G + + L V SGA
Sbjct: 28 DAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAG--ETVLRFTLELLNGMEVSSGAL 85
Query: 83 TGIYEALELRDGDKSVYGGKGVLNAVKNINDILG----PKLVGVDIRDQAEVDAIMLEID 138
+ + RDG L+ + + L P+L+ + RDQ E D+ +
Sbjct: 86 --LSPSHGERDG-----EADATLDPAEYTTEALQNSYFPRLLQLGARDQREFDSTLRAAL 138
Query: 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGG 196
T + +G+ +S+ A A + VPL+++++ L G T +P + G
Sbjct: 139 STSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFG 198
Query: 197 SHAGNN--LAMQEFMILPV 213
+ LA++ + PV
Sbjct: 199 PGNPSTARLALKSVLFSPV 217
>gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like. This domain
appears at the C-terminus of many of the proteins that
carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746
domains. EC:4.2.1.40.
Length = 111
Score = 30.6 bits (70), Expect = 0.47
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 364 VTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMV 411
+ + ++ + + + V ++G +TE+++ A +++ G V
Sbjct: 4 LYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAP 51
>gnl|CDD|234515 TIGR04234, seadorna_RNAP, seadornavirus RNA-directed RNA
polymerase. Members of this protein family are the
seadornavirus VP1 protein, the RNA-directed RNA
polymerase.
Length = 1144
Score = 31.0 bits (70), Expect = 1.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 17 KLKQSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSA 76
L++ +S R + S+ASS+ KS+ AR +S +VD + D+F +
Sbjct: 381 PLERGMLDKSTRLDILFKGGTSSASSTNPHKSIGARYRYNSPFIMDSDVDSKSIDVFDTY 440
Query: 77 VP 78
P
Sbjct: 441 AP 442
>gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase. This
model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are low GC gram positive bacteria and archaea.
Also included in the seed and in the model are enzymes
with the com-name of N-acylamino acid racemase (or the
more general term, racemase / racemase family), which
refers to the enzyme's industrial application as
racemases, and not to its biological function as
o-succinylbenzoic acid synthetase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 324
Score = 30.6 bits (69), Expect = 1.7
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 334 IEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVT 393
IE+PF DD S L I + D +T+ I+ + + +K ++G +T
Sbjct: 203 IEEPFKIDDISMLDELAKGT-ITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLT 261
Query: 394 ESIQAALDSKSAGWGVMV 411
E +A K G V +
Sbjct: 262 EVQKAIDTCKEHGAKVWI 279
>gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing
enzyme, C-terminal domain. C-terminal domain is TIM
barrel fold, dehydratase-like domain. Manganese is
associated with this domain.
Length = 69
Score = 27.8 bits (63), Expect = 2.1
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360
+ ++ IE+P DD A L+ + I +
Sbjct: 37 PYGLLWIEEPLPPDDLEGLAELRRATPIPIAAG 69
>gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the
conversion of
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
(SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate
(o-succinylbenzoate or OSB), a reaction in the
menaquinone biosynthetic pathway. Menaquinone is an
essential cofactor for anaerobic growth in eubacteria
and some archaea. OSBS belongs to the enolase
superfamily of enzymes, characterized by the presence of
an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 263
Score = 29.9 bits (68), Expect = 2.2
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
I IE P DD + L + V I L D+ L +A A + L+LK
Sbjct: 152 AGRIEYIEQPLPPDDLAELRRLAAGVPIAL--DESLRRLDDPLALAAA-GALGALVLKPA 208
Query: 388 QIGTVTESIQAALDSKSAGWGVMVS 412
+G ++ A ++++ G +VS
Sbjct: 209 LLGGPRALLELAEEARARGIPAVVS 233
>gnl|CDD|206172 pfam14002, YniB, YniB-like protein. The YniB-like protein family
includes the E. coli YniB protein, which is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are approximately 180
amino acids in length. This family of proteins are
integral membrane proteins.
Length = 166
Score = 29.2 bits (66), Expect = 2.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 186 PVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGI 235
PVP F GS+ G + ++++ VG A RM +V I +GI
Sbjct: 62 PVPDFLNGFSGSNIGFWVI---YLLIFVGLALQASGARMSRQVKFIREGI 108
>gnl|CDD|227291 COG4955, COG4955, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 343
Score = 29.8 bits (67), Expect = 3.4
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEG--GFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
R +YHIL G + QDA G P ++ R L + + K G
Sbjct: 19 RSNKSLYHILVGKRSHQTIQDAHLFQQLSLFGLLPLLK--RPSFELFLEKLNKQGILTVT 76
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYK 323
G V A GN +L P G + + QS+G ++
Sbjct: 77 ENGYTVTAK------GNAELEIMLHPFHGRY--TQQSMGQTFQ 111
>gnl|CDD|239445 cd03329, MR_like_4, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 4. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown.
Length = 368
Score = 29.7 bits (67), Expect = 4.0
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 334 IEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVT 393
EDP + SS+ L +DI ++G + + A+ + + + L VN +G +T
Sbjct: 220 YEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGIT 279
Query: 394 ESIQAA 399
+++ A
Sbjct: 280 GAMKTA 285
>gnl|CDD|227591 COG5266, CbiK, ABC-type Co2+ transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 264
Score = 29.4 bits (66), Expect = 4.0
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVP 78
+++K Q I+ +G TV TD R P
Sbjct: 54 SRLKIFSPMQTINPKGKFTVHQGGKTDYQSRLKEP 88
>gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the
Mg2+-dependent 1,1-proton transfer reaction that
interconverts the enantiomers of mandelic acid. MR is
the first enzyme in the bacterial pathway that converts
mandelic acid to benzoic acid and allows this pathway to
utilize either enantiomer of mandelate. MR belongs to
the enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 355
Score = 29.4 bits (66), Expect = 4.3
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 334 IEDPFDQDDWSSWASLQSS--VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391
IE+P Q D+ A + S+ +Q +G++ L P+ + +A+ +C+ ++ + +IG
Sbjct: 217 IEEPTLQHDYEGHARIASALRTPVQ-MGENWL--GPEEMFKALSAGACDLVMPDLMKIGG 273
Query: 392 VTESIQAALDSKSAG 406
VT ++A+ ++ AG
Sbjct: 274 VTGWLRASALAEQAG 288
>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
transport and metabolism].
Length = 220
Score = 29.1 bits (66), Expect = 4.3
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 41 SSSAKVKSVKARQIIDSRGNPTVEVD-LITDDLFRSAVPSGA 81
K++ + R +ID R + +EVD I + + +GA
Sbjct: 152 EVLEKIR--ELRAMIDERLDILIEVDGGINLETIKQLAAAGA 191
>gnl|CDD|151890 pfam11451, DUF3202, Protein of unknown function (DUF3202). This
archaeal family of proteins has no known function.
Length = 67
Score = 26.8 bits (59), Expect = 4.8
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 230 HILKGIIKEKYGQD-ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK 279
+L ++E G A +G + F+ ++D E ++LL D + AG K
Sbjct: 2 SLLDKTLEEWKGHKVAVGIGGDHSFSGILEDFDEEVILLKDVTDVAGNKAK 52
>gnl|CDD|131310 TIGR02257, cobalto_cobN, cobaltochelatase, CobN subunit.
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 1122
Score = 29.3 bits (66), Expect = 5.0
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 9 TARPLFSSKLK----QSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVE 64
P+F S LK Q+ + + + +T +S+ ++ + DS G P ++
Sbjct: 224 NPVPIFVSSLKDPAVQAGLLDALKEEDPALIITTTGFASSNEQADNGETLWDSLGVPVLQ 283
Query: 65 V 65
V
Sbjct: 284 V 284
>gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 2. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown.
Length = 341
Score = 29.2 bits (66), Expect = 5.3
Identities = 20/84 (23%), Positives = 31/84 (36%)
Query: 89 LELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGA 148
+E DG G A ++ L L+G D D ++ M + I
Sbjct: 16 IETDDGTVGYANTTGGPVACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAM 75
Query: 149 NAILGVSLSVCRAGAGAKGVPLYK 172
AI V L++ +G P+YK
Sbjct: 76 AAISAVDLALWDLLGKIRGEPVYK 99
>gnl|CDD|239430 cd03314, MAL, Methylaspartate ammonia lyase (3-methylaspartase,
MAL) is a homodimeric enzyme, catalyzing the
magnesium-dependent reversible alpha,beta-elimination of
ammonia from L-threo-(2S,3S)-3-methylaspartic acid to
mesaconic acid. This reaction is part of the main
catabolic pathway for glutamate. MAL belongs to the
enolase superfamily of enzymes, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Length = 369
Score = 28.9 bits (65), Expect = 6.1
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 326 VRDFPIVSIEDPFD----QDDWSSWASLQS-----SVDIQLVGDDLLVTNPKRIAEAIQK 376
FP + IE P D + A+L++ V +++V D+ T + I +
Sbjct: 225 AAPFP-LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNT-LEDIRDFADA 282
Query: 377 KSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASG 433
+ + + +K +G + +I A L K G G + ET+ + + V LA+
Sbjct: 283 GAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALATR 339
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 28.8 bits (64), Expect = 8.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 40 ASSSAKVKSVKARQIIDSRGNP--------TVEVDLITDDLFRSAVPSGASTGIYEALEL 91
AS +AK+K + IID GN V +D + + + +VP GA + E +
Sbjct: 2373 ASINAKIKLNNSNIIIDKNGNKIVISRSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSV 2432
Query: 92 RDGDK 96
+ GDK
Sbjct: 2433 KIGDK 2437
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.375
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,770,378
Number of extensions: 2333614
Number of successful extensions: 1571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1527
Number of HSP's successfully gapped: 44
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.2 bits)