RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012041
(472 letters)
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 824 bits (2132), Expect = 0.0
Identities = 291/431 (67%), Positives = 359/431 (83%), Gaps = 6/431 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T LFR+AVPSGASTGIYEALELRDGDK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV +IN + P L+ G+ + +Q ++D +MLE+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A + +PLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK+KYG+DA NVGDEGGFAPN+ +N E L L+ +AI+KAGYT KI I
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 241
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ +DG YDL+FK P D + ++ LG LY++FVRD+P+VSIEDPFDQDD
Sbjct: 242 GMDVAASEFY-RDGKYDLDFKS-PTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDD 299
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDS 402
W++W+ ++V IQ+VGDDL VTNPKRI A+++K+CN LLLKVNQIG+VTE+IQA +
Sbjct: 300 WAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLA 359
Query: 403 KSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGNV 462
+ GWGVMVSHRSGETED FIADL VGL +GQIKTGAPCRSERLAKYNQL+RIEEELG+
Sbjct: 360 QENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDE 419
Query: 463 -RYAGQDFRSP 472
R+AG +FR+P
Sbjct: 420 ARFAGHNFRNP 430
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 820 bits (2121), Expect = 0.0
Identities = 264/436 (60%), Positives = 329/436 (75%), Gaps = 5/436 (1%)
Query: 42 SSAKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYG 100
S ++ V AR+I+DSRGNPT+EV++ T +FRS VPSGASTG++EA+ELRDGDK YG
Sbjct: 4 GSMSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYG 63
Query: 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCR 160
GKGVL AV+N+N I+GP L+G ++ +QAE+D +M+++DGT NK K+GANAILG S+S+CR
Sbjct: 64 GKGVLKAVENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICR 123
Query: 161 AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A A KG+PLYK++ EL+G KE+ MPVP FNVINGG+HAGN LAMQEFMI P GAT+F E
Sbjct: 124 AAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHE 183
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALRM +E Y LK +IK KYGQDA NVGDEGGFAPNV RE L LL +AI KAGYTGKI
Sbjct: 184 ALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKI 243
Query: 281 NIGMDVAASEFFTKD-GNYDLNFK--KQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP 337
I MD AASEF+ ++ YDL K D + V L Y ++ + +PI SIEDP
Sbjct: 244 EIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDP 303
Query: 338 FDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESI 396
F +DDW++W + Q+VGDDLLVTNP R+ A+ K +CN +L+KVNQIGT+TE+
Sbjct: 304 FAEDDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETF 363
Query: 397 QAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIE 456
+ ++ GWGVM SHRSGETED FIADL VGL QIKTGAPCRSERL KYNQL+RIE
Sbjct: 364 KTIKMAQEKGWGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCKYNQLMRIE 423
Query: 457 EELGNVRYAGQDFRSP 472
EELGN+ YAG+++R+
Sbjct: 424 EELGNIPYAGKNWRNS 439
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 819 bits (2117), Expect = 0.0
Identities = 270/433 (62%), Positives = 332/433 (76%), Gaps = 7/433 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
V V AR + DSRGNPTVEV+L T+ +FRS VPSGASTG++EALE+RDGDKS + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L+AVKN+ND++ P V +D++DQ VD ++ +DGT NKSK+GANAILGVSL+ RA
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 163 AGAKGVPLYKHIQELSGTK--ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A K VPLYKH+ +LS +K V+PVP NV+NGGSHAG LA+QEFMI P GA +FAE
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAE 181
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALR+GSEVYH LK + K++YG A NVGDEGG APN+Q E L L+ DAI+ AG+ GK+
Sbjct: 182 ALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKV 241
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
IG+D A+SEFF KDG YDL+FK +D + L+ L DLY ++ +PIVSIEDPF +
Sbjct: 242 KIGLDCASSEFF-KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAE 300
Query: 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAAL 400
DDW +W+ + IQ+V DDL VTNPKRIA AI+KK+ + LLLKVNQIGT++ESI+AA
Sbjct: 301 DDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQ 360
Query: 401 DSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG 460
DS +AGWGVMVSHRSGETED FIADL VGL +GQIKTGAP RSERLAK NQLLRIEEELG
Sbjct: 361 DSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELG 420
Query: 461 NV-RYAGQDFRSP 472
+ +AG++F
Sbjct: 421 DNAVFAGENFHHG 433
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 800 bits (2068), Expect = 0.0
Identities = 258/442 (58%), Positives = 333/442 (75%), Gaps = 13/442 (2%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGK 102
+K + AR+I+DSRGNPT+EVD+ T+ +FR+AVPSGASTGIYEALELRD D Y GK
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 103 GVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSL 156
GVLNAV+ + + P L+G D DQ +D +M+E +DGT N KSK+GANAILGVS+
Sbjct: 62 GVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSI 121
Query: 157 SVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVG 214
+ CRAGA +KG+PLYK+I L+G ++VMPVP FNVINGG HAGN LA+QEF+I PVG
Sbjct: 122 ACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPVG 181
Query: 215 ATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKA 274
A + EA+R GSE YH LK +IK KYG DA NVGDEGGFAPNV E L LL +AI+ A
Sbjct: 182 APNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAA 241
Query: 275 GYTGKINIGMDVAASEFFTK-DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS 333
GY GKI I D AASEF+ + + YDL++K + + + L+ + L ++Y+ +++ +PI+S
Sbjct: 242 GYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIIS 301
Query: 334 IEDPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGT 391
+EDPFDQDD++S+++ V Q++GDD+LVTN RI +A++ K+CN LLLKVNQIG+
Sbjct: 302 VEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGS 361
Query: 392 VTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQ 451
VTE+I+A L ++ +GWGV VSHRSGETED+FIADL VGL GQIK+G+PCRSERL KYNQ
Sbjct: 362 VTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCKYNQ 421
Query: 452 LLRIEEELGNV-RYAGQDFRSP 472
L+RIEE LG YAG+ FR P
Sbjct: 422 LMRIEESLGADCVYAGESFRHP 443
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 798 bits (2063), Expect = 0.0
Identities = 256/430 (59%), Positives = 325/430 (75%), Gaps = 8/430 (1%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103
++ V R+++DSRGNPTVEV++ T+ +FRSAVPSGASTG+YEA ELRDGDK Y GKG
Sbjct: 5 TIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKG 64
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
L AVKN+N+++GP L+G D Q E+D +ML +DGTPNK K+GANAILG S+++ +A A
Sbjct: 65 CLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAA 124
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
AKGVPLY+++ L+GTKEL +PVP FNVINGG HAGN L QEFMI PV ATSF+EALR
Sbjct: 125 AAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALR 184
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283
MGSEVYH L+GIIK+KYGQDA NVGDEGGFAP ++D E L +L +AIE+AG+ GK I
Sbjct: 185 MGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAIC 244
Query: 284 MDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
MD AASE + + Y+L FK + ++A+ L + Y ++ D+PIVSIEDP+DQDD
Sbjct: 245 MDCAASETYDEKKQQYNLTFK---SPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDD 301
Query: 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAAL 400
++ +A + ++ Q+VGDDL VTN +RI AI+KK+CN LLLK+NQIGT++E+I ++
Sbjct: 302 FAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSK 361
Query: 401 DSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG 460
GW VMVSHRSGETED +IADL V L SGQIKTGAPCR ER AK NQLLRIEEELG
Sbjct: 362 LCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELG 421
Query: 461 NV-RYAGQDF 469
++ +
Sbjct: 422 AHAKFGFPGW 431
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 762 bits (1969), Expect = 0.0
Identities = 250/434 (57%), Positives = 325/434 (74%), Gaps = 15/434 (3%)
Query: 41 SSSAKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSV 98
++K + AR++IDSRGNPTVEV++IT + VPSGASTG +EALELRD +K
Sbjct: 6 DERFEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKR- 64
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSV 158
+GGKGVL AV+N+N I+ P+++G D R Q E+D IM+E+DGTPNKS++GANAIL VSL+V
Sbjct: 65 FGGKGVLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAV 124
Query: 159 CRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218
+A A +PLYK+ L G VMPVP NVINGG HAGN+L +QEFMI+PVGATS
Sbjct: 125 AKAAAATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSI 181
Query: 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG 278
+EA+RMGSEVYH+LK +I EKYG++A NVGDEGGFAP ++ +RE L LLT++++KAGY
Sbjct: 182 SEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYED 241
Query: 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338
++ +D AASEF+ KDG Y + KK L+ + L D YK V ++PIVSIEDPF
Sbjct: 242 EVVFALDAAASEFY-KDGYYYVEGKK--------LTREELLDYYKALVDEYPIVSIEDPF 292
Query: 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQA 398
++D+ +A + +DIQ+VGDDL VTN +R+ + I+ K+ N LLLKVNQIGT++E++ A
Sbjct: 293 HEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDA 352
Query: 399 ALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEE 458
A + G+GV+VSHRSGETED IADLSV L SGQIKTGAP R ER AKYNQL+RIE+E
Sbjct: 353 AQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIRIEQE 412
Query: 459 LGNVRYAGQDFRSP 472
LG +YAG++FR P
Sbjct: 413 LGLSKYAGRNFRCP 426
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 650 bits (1680), Expect = 0.0
Identities = 211/432 (48%), Positives = 289/432 (66%), Gaps = 13/432 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+ + V AR+++DSRGNPT+EV++ T+ R VPSGASTG +EA+ELRDGDKS YGG
Sbjct: 12 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 71
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
G AV N+N+I+ ++G D+RDQ +D M+ +DGTPNK K+GANAILGVS++V RA
Sbjct: 72 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 131
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A +PLY + L G V+P P N+INGGSH+ +A QEFMILPVGA +F EA
Sbjct: 132 AADYLEIPLYSY---LGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEA 188
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LR G+E++H LK I+K + VGDEGGFAP + +G+ + AIE AGY GK
Sbjct: 189 LRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKD 246
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
+ +G D A+SEF+ ++ K +GA V ++ D +E V +PI++IED D
Sbjct: 247 VFLGFDCASSEFY-DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMD 305
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQ 397
++DW W +L + +QLVGDD VTN +A IQ+ + N +L+KVNQIGT+TE+ +
Sbjct: 306 ENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFE 365
Query: 398 AALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEE 457
A +K AG+ +VSHRSGETED+ IAD++V +GQIKTG+ R++R+AKYNQLLRIE+
Sbjct: 366 AIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIED 425
Query: 458 ELGNV-RYAGQD 468
+LG V Y G
Sbjct: 426 QLGEVAEYRGLK 437
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 647 bits (1672), Expect = 0.0
Identities = 224/437 (51%), Positives = 294/437 (67%), Gaps = 17/437 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+K+ + R+IIDSRGNPTVE ++ + + +A PSGASTG EALELRDGDKS + G
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGV AV +N + L+G D +DQA +D IM+++DGT NKSK GANAIL VSL+ +A
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 162 GAGAKGVPLYKHIQELSGTKE-LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A AKG+PLY+HI EL+GT MPVP N+INGG HA NN+ +QEFMI PVGA + E
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKE 180
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK 279
A+RMGSEV+H L ++K K G VGDEGG+APN+ N E L ++ +A++ AGY GK
Sbjct: 181 AIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK 238
Query: 280 -INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338
I + MD AASEF+ KDG Y L +G +++ +E + +PIVSIED
Sbjct: 239 DITLAMDCAASEFY-KDGKYVL-----AGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGL 292
Query: 339 DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESI 396
D+ DW +A + IQLVGDDL VTN K + E I+K N +L+K NQIG++TE++
Sbjct: 293 DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETL 352
Query: 397 QAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIE 456
A +K AG+ ++SHRSGETED IADL+VG A+GQIKTG+ RS+R+AKYNQL+RIE
Sbjct: 353 AAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIE 412
Query: 457 EELGNV-RYAGQD-FRS 471
E LG Y G+ +
Sbjct: 413 EALGEKAPYNGRKEIKG 429
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 643 bits (1661), Expect = 0.0
Identities = 213/444 (47%), Positives = 290/444 (65%), Gaps = 19/444 (4%)
Query: 33 QCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALE 90
++ + + +++ V R+IIDSRGNPTVE ++ R PSGASTG +EALE
Sbjct: 15 TENLYFQSMNYLEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALE 74
Query: 91 LRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANA 150
LRDGDK +GGKGV AV+NIN + L G+D D VD M++ DGT +KSK GANA
Sbjct: 75 LRDGDKGRFGGKGVTKAVQNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANA 134
Query: 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210
+L VS++ +A A A GVPLY+ L G +PVP N++NGG+HA N + +QEFMI
Sbjct: 135 VLAVSIACAKAAAAALGVPLYRF---LGGLNANRLPVPMMNILNGGAHAANTVDVQEFMI 191
Query: 211 LPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270
+PVGA SF EALR +EV+H L G++K K G A +VGDEGGFAP++ + E + + +A
Sbjct: 192 MPVGAESFREALRQCTEVFHALAGLLKSK-GL-ATSVGDEGGFAPDLASDEEAIEYILEA 249
Query: 271 IEKAGYT-GK-INIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327
++ AGY G+ + MD A+SE+ K G Y L K+ +++ L +K
Sbjct: 250 VKLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKR------KFASEELVAHWKSLCE 303
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+PIVSIED D++DW W + + IQLVGDDL VTN +R+ + I+++ N +L+K
Sbjct: 304 RYPIVSIEDGLDEEDWEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIK 363
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSER 445
+NQIGTV+E+++A + AG+ +VSHRSGETED IADL+V L +GQIKTGAP RSER
Sbjct: 364 LNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVALNTGQIKTGAPSRSER 423
Query: 446 LAKYNQLLRIEEELGNV-RYAGQD 468
+AKYNQLLRIEEELG+ Y G
Sbjct: 424 VAKYNQLLRIEEELGDSAVYPGFT 447
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 640 bits (1653), Expect = 0.0
Identities = 206/432 (47%), Positives = 286/432 (66%), Gaps = 20/432 (4%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
A + + A +I+DSR NPT+EV + +AVPSGASTG EA+ELRD D YGG
Sbjct: 3 ATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGG 62
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV+N+N + L+G D R Q E+D IM+E+DGT NK+ +GANAILGVSL+V A
Sbjct: 63 KGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A +PLY+++ G MPVP N+INGG+HA NNL QEFMI+PVGA +FAEA
Sbjct: 123 AANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEA 180
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LR G+EV+H LK + + G VGDEGGFAP++ +N L+ +AIE A Y GK
Sbjct: 181 LRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
I + +D A+SE + ++G YD + L+++ + D E+ + +P++SIED
Sbjct: 239 IYLALDAASSELY-QNGRYDFENNQ--------LTSEEMIDRLTEWTKKYPVISIEDGLS 289
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQ 397
++DW+ W L + +QLVGDD+ VTNP + + I+K N +L+K+NQIGT+TE++
Sbjct: 290 ENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLA 349
Query: 398 AALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEE 457
+KS +GV++SHRSGETED IADL+V + QIKTG+ CRS+R+AKYN+LL+IE
Sbjct: 350 TVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKTGSLCRSDRVAKYNRLLQIER 409
Query: 458 ELGNV-RYAGQD 468
EL + YAG++
Sbjct: 410 ELNDQAPYAGKE 421
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 636 bits (1642), Expect = 0.0
Identities = 198/430 (46%), Positives = 276/430 (64%), Gaps = 21/430 (4%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
++ V+A +++DSRGNPTV+ ++ D + + VPSGASTG EALELRD D+ +GG
Sbjct: 5 LVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDER-FGG 63
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV N+N+ + +++G+D +Q ++D + E+DGT N S +GANA LGVS++ RA
Sbjct: 64 KGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARA 123
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A A G+PLY++ L G ++PVP N+INGG+HA NN+ QEFMI+P G TSF EA
Sbjct: 124 AAAALGMPLYRY---LGGANASILPVPMCNIINGGAHANNNVDFQEFMIMPFGFTSFKEA 180
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281
LR E+Y ILK + + +GDEGGFAPN+ +N E + LL I+KAGY ++
Sbjct: 181 LRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRVK 238
Query: 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341
I +DVA++EFF KDG Y + K S+++L + Y E +PI SIED ++
Sbjct: 239 IALDVASTEFF-KDGKYHMEGKA--------FSSEALIERYVELCAKYPICSIEDGLAEN 289
Query: 342 DWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAA 399
D+ W L + IQLVGDDL VTN + E I KK N +L+K NQIGT+T++++
Sbjct: 290 DFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTV 349
Query: 400 LDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEEL 459
++ + ++SHRSGE+ED FIAD +V L +GQIKTGA R ER AKYN+LL IE E
Sbjct: 350 RLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGERTAKYNRLLEIEFES 409
Query: 460 GNVRYAGQDF 469
Y G+
Sbjct: 410 D--EYLGEKL 417
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 96.7 bits (240), Expect = 6e-22
Identities = 74/417 (17%), Positives = 137/417 (32%), Gaps = 76/417 (18%)
Query: 62 TVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN----AVKNINDILGP 117
++ V L+ +D G + ++ S GG+ L + I + P
Sbjct: 52 SISVLLVLED--------GQ-VAHGDCAAVQY---SGAGGRDPLFLAKDFIPVIEKEIAP 99
Query: 118 KLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAI-LGVSLSVCRAGAGAKGVPLYKHIQE 176
KL+G +I + + E D AI G++ ++ A A + V + + I++
Sbjct: 100 KLIGREITN---FKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRD 156
Query: 177 LSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGII 236
+ VP F + + MI+ + + H L +
Sbjct: 157 EYNPGAEINAVPVF-----AQSGDDRYDNVDKMII-----------KEADVLPHALINNV 200
Query: 237 KEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296
+EK G + E + L D I K + + D A G
Sbjct: 201 EEKLGLKG-------------EKLLEYVKWLRDRIIK------LRVREDYAPIFHIDVYG 241
Query: 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSS 352
F A + E + F + IE P D +D + L++
Sbjct: 242 TIGAAFDVDIKAMADYIQT------LAEAAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAE 294
Query: 353 VD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGW 407
+D +LV D+ T + + K+ + + +K +G V A + K+ G
Sbjct: 295 LDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGM 353
Query: 408 GVMVSHRSGETEDNFIADLSVGLASGQ----IKTGAPCRSERLAKYNQLLRIEEELG 460
G ET + ++G+A G K G + N++ R+ +G
Sbjct: 354 GAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVG 410
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 84.7 bits (209), Expect = 6e-18
Identities = 59/362 (16%), Positives = 119/362 (32%), Gaps = 58/362 (16%)
Query: 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPL 170
+ND + P L G D+ ++ + + + G+S ++ A A A G
Sbjct: 93 LNDHIKPLLEGRDVDAFLPNARFFDKL--RIDGNLLHTAVRYGLSQALLDATALASGRLK 150
Query: 171 YKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230
+ + + + +P F G + + MIL + + H
Sbjct: 151 TEVVCDEWQLPCVPEAIPLF-----GQSGDDRYIAVDKMIL-----------KGVDVLPH 194
Query: 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASE 290
L ++EK G + RE + L+D I + + + + +
Sbjct: 195 ALINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSPRYHPTLHIDVYG 241
Query: 291 FFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD----QDDWSSW 346
+ D V A+ + L ++ + P+ IE P D D
Sbjct: 242 TIGLIFDMDP-----------VRCAEYIASL-EKEAQGLPL-YIEGPVDAGNKPDQIRML 288
Query: 347 ASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALD 401
++ + +++V D+ + I + SC+ + +K +G + + A L
Sbjct: 289 TAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLY 347
Query: 402 SKSAGWGVMVSHRSGETEDNFIADLSVGLASG--QI--KTGAPCRSERLAKYNQLLRIEE 457
G ETE + + V LA+ ++ K G +N++ R
Sbjct: 348 CNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIA 407
Query: 458 EL 459
L
Sbjct: 408 LL 409
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 49.6 bits (119), Expect = 1e-06
Identities = 58/349 (16%), Positives = 99/349 (28%), Gaps = 80/349 (22%)
Query: 98 VYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLS 157
+Y + + A+ + P ++G + V + G A V ++
Sbjct: 61 MYREETIAGALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRM-------ARAMVEMA 113
Query: 158 VCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATS 217
A GVPL L G KE V + I +
Sbjct: 114 AWDLWARTLGVPLGTL---LGGHKE---QVEVGVSL---------------GIQADEQAT 152
Query: 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT 277
R + Y +K +K K G D V A +A
Sbjct: 153 VDLVRRHVEQGYRRIK--LKIKPGWDVQPV---------------------RATREAF-- 187
Query: 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP 337
I + +D N + A L L ++ + IE P
Sbjct: 188 PDIRLTVDA--------------------NSAYTLADAGRLRQL-----DEYDLTYIEQP 222
Query: 338 FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQ 397
DD A L + L D+ + + +A+ + + LKV ++G ES +
Sbjct: 223 LAWDDLVDHAELARRIRTPLCLDESVAS-ASDARKALALGAGGVINLKVARVGGHAESRR 281
Query: 398 AALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERL 446
++S G V E+ ++ + S G + R
Sbjct: 282 VHDVAQSFGAPVWC-GGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRY 329
>3qld_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, isomerase; HET: MSE; 1.85A
{Alicyclobacillus acidocaldarius LAA1}
Length = 388
Score = 49.3 bits (118), Expect = 1e-06
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ + IE P +DDW A LQ+S+ + D+ + + + + + + L +K
Sbjct: 214 AYDLQFIEQPLPEDDWFDLAKLQASLRTPVCLDESVRS-VRELKLTARLGAARVLNVKPG 272
Query: 388 QIGTVTESIQAALDSKSAGWGVMVSH 413
++G +++A + AG V
Sbjct: 273 RLGGFGATLRALDVAGEAGMAAWVGG 298
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A
{Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A*
1sjb_A* 1sjc_A*
Length = 368
Score = 48.4 bits (116), Expect = 3e-06
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
F ++ IE P +++D A L + + D+ +V+ + A+AI+ + + +K
Sbjct: 207 PFGLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVS-ARAAADAIKLGAVQIVNIKPG 265
Query: 388 QIGTVTESIQAALDSKSAGWGVMV 411
++G E+ + + G V
Sbjct: 266 RVGGYLEARRVHDVCAAHGIPVWC 289
Score = 29.9 bits (68), Expect = 1.7
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 98 VYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
+Y + A + L P L+ + A+V ++ + G
Sbjct: 54 LYSSEYNDGAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHR 97
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 48.5 bits (116), Expect = 3e-06
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ + IE PF D+ A LQ + ++ D+ + + K + +A SC + LK+
Sbjct: 226 QYDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDENIRS-VKDVEQAHSIGSCRAINLKLA 284
Query: 388 QIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERL 446
++G ++ +++ A V E ++++ + + G S R
Sbjct: 285 RVGGMSSALKIAEYCALNEILVWC-GGMLEAGVGRAHNIALAARNEFVFPGDISASNRF 342
Score = 30.4 bits (69), Expect = 1.3
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 98 VYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
Y + + +A+ I + L P L IR E+ + I G
Sbjct: 74 DYTEETLSSAILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNE 117
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 48.0 bits (115), Expect = 4e-06
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ + IE P DD A LQ + + D+ L ++ +AI+ + +K
Sbjct: 206 ELRLDYIEQPLAYDDLLDHAKLQRELSTPICLDESLTG-AEKARKAIELGAGRVFNVKPA 264
Query: 388 QIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERL 446
++G ES++ ++SAG + + E +L + G K G + R
Sbjct: 265 RLGGHGESLRVHALAESAGIPLWM-GGMLEAGVGRAHNLHLATLPGFTKPGDVSSASRY 322
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
Y + V A + ++ P+++G D+ + + + G P
Sbjct: 55 YREETVAGARYLLEEVFLPRVLGRDLPNPEALREALAPFRGNP 97
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 47.4 bits (113), Expect = 5e-06
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++ IE+PF + + D+ T+ I I+ + ++LK
Sbjct: 190 REQVLYIEEPFKDISM--LDEVADGTIPPIALDEK-ATSLLDIINLIELYNVKVVVLKPF 246
Query: 388 QIGTVTESIQAALDSKSAGWGVMVS 412
++G + + A KS G V++
Sbjct: 247 RLGGIDKVQTAIDTLKSHGAKVVIG 271
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 47.7 bits (114), Expect = 5e-06
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ + IE PF DD+ A LQ + ++ D+ + + K A+ SC + LK+
Sbjct: 226 HYQLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRS-LKDCQVALALGSCRSINLKIP 284
Query: 388 QIGTVTESIQAALDSKSAGWGVMVSH 413
++G + E+++ A + V +
Sbjct: 285 RVGGIHEALKIAAFCQENDLLVWLGG 310
Score = 32.2 bits (74), Expect = 0.32
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 24/109 (22%)
Query: 45 KVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
++S++ Q+ + S G + + G G E +
Sbjct: 21 NIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQ--------GN-QGFGELVAFE 71
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
D Y + ++ I L P L+ I EV I E+ G
Sbjct: 72 QPD---YVQETLVTERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHW 117
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 45.3 bits (108), Expect = 3e-05
Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ I IE P +++ + L +S ++ D+ + + ++ + + LK
Sbjct: 217 LGGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIEC-VEDAFNLAREGAASVFALK 275
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ + G +++ A +++AG G+
Sbjct: 276 IAKNGGPRATLRTAAIAEAAGIGLYG 301
Score = 29.5 bits (67), Expect = 2.4
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 24/105 (22%)
Query: 42 SSAKVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEAL 89
++ ++S++ + + V + L D G G+ E+
Sbjct: 4 HASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCAD--------GI-EGLGES- 53
Query: 90 ELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIM 134
YG + + NI+ + P L+G D + +
Sbjct: 54 --TTIGGLAYGNESPDSIKTNIDRFVAPLLIGQDASNINAAMLRL 96
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 45.0 bits (107), Expect = 3e-05
Identities = 12/86 (13%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + + +E P + ++ + L + ++ D+ L + E + + + LK
Sbjct: 211 LEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESLSS-LSSAFELARDHAVDAFSLK 269
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ +G + +++ A +++AG
Sbjct: 270 LCNMGGIANTLKVAAVAEAAGISSYG 295
Score = 28.4 bits (64), Expect = 5.5
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIM 134
+G + I++ L P LVG D + ++ +M
Sbjct: 55 WGSESAETIKVIIDNYLAPLLVGKDASNLSQARVLM 90
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 44.6 bits (106), Expect = 4e-05
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + IE P D ++ L ++ ++ D+ + T + Q+ LK
Sbjct: 216 LAAMGVDLIEQPVSAHDNAALVRLSQQIETAILADEAVAT-AYDGYQLAQQGFTGAYALK 274
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ + G + A +++AG G+
Sbjct: 275 IAKAGGPNSVLALARVAQAAGIGLYG 300
Score = 29.6 bits (67), Expect = 2.5
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 34/146 (23%)
Query: 41 SSSAKVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEA 88
S +A V+ +++ + S V V L D G GI EA
Sbjct: 2 SLTATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSD--------GI-CGIGEA 52
Query: 89 LELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGA 148
+ YG + I L P L G + ++A+ ++G I
Sbjct: 53 TTIGG---LSYGVESPEAISSAITHYLTPLLKGQPADN---LNALTARMNGA-----IKG 101
Query: 149 N--AILGVSLSVCRAGAGAKGVPLYK 172
N A + ++ A A G+P+
Sbjct: 102 NTFAKSAIETALLDAQGKALGLPVSA 127
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 44.6 bits (106), Expect = 5e-05
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
V F IE P + A L+ D+ L+ D+ + P+ + A + C+G+ +K
Sbjct: 215 VAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESVYG-PEDMVRAAHEGICDGVSIK 273
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVSH 413
+ + G +T + A + + G
Sbjct: 274 IMKSGGLTRAQTVARIAAAHGLMAYGGD 301
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 43.5 bits (103), Expect = 1e-04
Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + E P + L ++ + D+ L++ + + N +K
Sbjct: 227 MDAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLIS-SRVAEFVAKLGISNIWNIK 285
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ ++G + E+I+ + G +
Sbjct: 286 IQRVGGLLEAIKIYKIATDNGIKLWG 311
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 90/563 (15%), Positives = 151/563 (26%), Gaps = 225/563 (39%)
Query: 26 SYRPM-----RVQCSVA-STASSSAKVKSVKARQIID----SRGNPTVEVDLITDDLFRS 75
S RP+ ++ + TAS A Q+ + PT DD +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFI------ASQLQEQFNKILPEPTEG--FAADDEPTT 56
Query: 76 AVPSGAS-TGIYEALELRDGDKSVYGGKGVLNAVKNI--NDILGPKLVGVDIRDQAEVDA 132
G Y + + + VLN N L G DI A
Sbjct: 57 PAELVGKFLG-YVSSLVEPSKVGQF--DQVLNLCLTEFENCYLE----GNDI--HALAAK 107
Query: 133 IMLEIDGTPNKSK------IGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMP 186
++ E D T K+K I A + A L++ + E G +LV
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------LFRAVGE--GNAQLV-- 157
Query: 187 VPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIK--------- 237
F GG GN ++ F E LR ++Y ++
Sbjct: 158 -AIF----GGQ--GNT---DDY---------FEE-LR---DLYQTYHVLVGDLIKFSAET 194
Query: 238 -----------EKYGQDACNVG---DEGGFAPNVQDNREGLVLLTDAI------------ 271
EK N+ + P+ LL+ I
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD------YLLSIPISCPLIGVIQLAH 248
Query: 272 -----EKAGYT---------GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQS 317
+ G+T G + + A S +S
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-----------------AETDSWES 291
Query: 318 LGDLYKEFVR-----------DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD----- 361
++ + +P S+ + L+ S++ +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPP----------SILEDSLE---NNEGVPSPM 338
Query: 362 LLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDN 421
L ++N + E +Q + K N + ++ +L +G N
Sbjct: 339 LSISNLTQ--EQVQD-----YVNKTNSHLPAGKQVEISL-------------VNGA--KN 376
Query: 422 FI-----ADLSVGLASGQIKTGAP-----CR---SERLAK-YNQLLRI------------ 455
+ L GL K AP R SER K N+ L +
Sbjct: 377 LVVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 456 ----EEEL--GNVRYAGQDFRSP 472
++L NV + +D + P
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIP 458
Score = 43.1 bits (101), Expect = 2e-04
Identities = 70/467 (14%), Positives = 128/467 (27%), Gaps = 181/467 (38%)
Query: 1 MASSL-----TNPTARPLFSSKL--------KQSTPPRSYRPMRVQCSVASTASS----- 42
A +L T A +F+ L +TP + Y + S S
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--------LLSIPISCPLIG 242
Query: 43 ---------SAKVKSVKARQIIDS-RGNPTVEVDLITDDLFRSAVPSGASTG------IY 86
+AK+ ++ +G L+T + + + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-----AVAIAETDSWESFFVSVR 297
Query: 87 EALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNK--- 143
+A+ + + G A N + L P ++ + + V + ML I +
Sbjct: 298 KAITV-----LFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 144 SKIGA-NAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202
+ N+ L P K + E+S ++NG +
Sbjct: 351 DYVNKTNSHL----------------PAGKQV-EIS-------------LVNGAKN---- 376
Query: 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGF---APNVQD 259
+++ + ++L + K K G D + F
Sbjct: 377 ------LVV----SGPPQSLY--GLNLTLRK--AKAPSGLDQSRIP----FSERKLKFS- 417
Query: 260 NREGLV--------LLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAH 311
NR L LL A + I D+ +
Sbjct: 418 NR-FLPVASPFHSHLLVPASDL--------INKDLVKNNV-------------------- 448
Query: 312 VLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIA 371
+A+ + P+ +D D S L S+ ++V D ++ P +
Sbjct: 449 SFNAKDIQ---------IPV------YDTFDGSDLRVLSGSISERIV--DCIIRLPVKWE 491
Query: 372 EAIQKK------------SCNGLLLKVNQIGTVTESIQA-ALDSKSA 405
Q K S G+L N+ GT I A LD
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 36.6 bits (84), Expect = 0.021
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 59/184 (32%)
Query: 33 QCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
Q A T A + +K++ +I + D F A G S G Y AL
Sbjct: 1733 Q--PALTLMEKAAFEDLKSKGLIPA------------DATF--A---GHSLGEYAAL--- 1770
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGAN-AI 151
V+ +I ++ ++ V R A+ P +N +
Sbjct: 1771 -----ASLA-DVM----SIESLV--EV--VFYRGMTMQVAV-------PRDELGRSNYGM 1809
Query: 152 LGVSLSVCRAGAGAKGVPLY-KHIQELSGTKELVMPVPAFN------VINGGSHAGNNLA 204
+ ++ A + + + + + +G LV V +N V AG+ A
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTG--WLVEIV-NYNVENQQYVA-----AGDLRA 1861
Query: 205 MQEF 208
+
Sbjct: 1862 LDTV 1865
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A*
3dg7_A*
Length = 367
Score = 41.9 bits (99), Expect = 3e-04
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ D ++ E+ DD S L +D+ + D+ + T P + + S + +K
Sbjct: 208 MADLDLLFAEELCPADDVLSRRRLVGQLDMPFIADESVPT-PADVTREVLGGSATAISIK 266
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ G T S + ++ G +++
Sbjct: 267 TARTG-FTGSTRVHHLAEGLGLDMVM 291
Score = 30.3 bits (69), Expect = 1.2
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 26/109 (23%)
Query: 45 KVKSVKARQI--------IDSRGN----PTVEVDLITDDLFRSAVPSGASTGIYEALELR 92
K+ ++ A + G V V + TDD G G+ EA
Sbjct: 2 KIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDD--------GI-VGVAEAPPR- 51
Query: 93 DGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTP 141
G+ V I P L+G+ + ++ M G P
Sbjct: 52 ----PFTYGETQTGIVAVIEQYFAPALIGLTLTEREVAHTRMARTVGNP 96
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 41.2 bits (97), Expect = 5e-04
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD-LLVTNPKRIAEAIQKKSCNGLLLKV 386
F + SIE P Q WS A+L ++ + + D+ L+ ++ + + ++LK
Sbjct: 233 QFHLHSIEQPIRQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKP 292
Query: 387 NQIGTVTESIQAALDSKSAGWGVMVSH 413
+ +G + Q ++ G G ++
Sbjct: 293 SLLGGFHYAGQWIELARERGIGFWITS 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 8e-04
Identities = 55/367 (14%), Positives = 87/367 (23%), Gaps = 137/367 (37%)
Query: 171 YKHI----QELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS 226
HI +SGT L F + + Q+F+ E LR+
Sbjct: 51 IDHIIMSKDAVSGTLRL------FWTL---LSKQEEMV-QKFV---------EEVLRIN- 90
Query: 227 EVYHILKGIIKEKYGQDA-------------CNVGDEGGFAP-NVQDNREGLVL-LTDAI 271
Y L IK + Q + N FA NV +R L L A+
Sbjct: 91 --YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNV--SRLQPYLKLRQAL 144
Query: 272 EKAGYTGKINI-GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP 330
+ + I G+ L K ++ + DF
Sbjct: 145 LELRPAKNVLIDGV---------------LGSGKT------WVALDVCLSYKVQCKMDFK 183
Query: 331 IVSIEDPFDQDDWSSWASLQSSVDI---------QLVGD-----DLLVTNPKRIAEAIQK 376
I F W + + S + Q+ + D RI +
Sbjct: 184 I------F----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 377 KS--------CNGLL----------LKVNQIG------TVTESIQAALDSKSAGWGVMVS 412
N LL + T + + L + + +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 413 HRSGETEDN----F--IADLSVGLASGQIKTGAP--------------CRSERLAKYN-- 450
H T D D ++ T P + N
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 451 QLLRIEE 457
+L I E
Sbjct: 354 KLTTIIE 360
Score = 33.3 bits (75), Expect = 0.19
Identities = 29/199 (14%), Positives = 54/199 (27%), Gaps = 65/199 (32%)
Query: 284 MDVAASEF----------FTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS 333
MD E F + + K + +LS + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--------- 57
Query: 334 IEDPFDQDDWSSWASLQSSVDI--QLVGDDLLVTNPKRIAEAIQKK------------SC 379
+D W L ++ + V ++L N K + I+ +
Sbjct: 58 -KDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 380 NGLLLKVNQI---GTVT-----ESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLA 431
L NQ+ V+ ++ AL V++ G+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-D---------------GVL 159
Query: 432 -SGQIKT---GAPCRSERL 446
SG KT C S ++
Sbjct: 160 GSG--KTWVALDVCLSYKV 176
Score = 31.7 bits (71), Expect = 0.62
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 51/162 (31%)
Query: 318 LGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGD---------DLLVTN 366
L FV +F ++D + L I + D L++
Sbjct: 22 LSVFEDAFVDNFDCKDVQD-------MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 367 PKRIAEAIQKKSCNGLLLKVNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADL 426
+ + + ++ +L++N + I+ S + + R DN
Sbjct: 75 QEEMVQKFVEE-----VLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN----- 123
Query: 427 SVGLASGQIKTGAPCRSERLAKYN-----QLLRIEEELGNVR 463
+ AKYN L++ + L +R
Sbjct: 124 -----------------QVFAKYNVSRLQPYLKLRQALLELR 148
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 40.3 bits (95), Expect = 0.001
Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + IE P +++ + L + + ++ D+ L T + + +S + LK
Sbjct: 211 LEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESLST-LASAFDLARDRSVDVFSLK 269
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ +G V+ + + A ++++G
Sbjct: 270 LCNMGGVSATQKIAAVAEASGIASYG 295
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 39.9 bits (94), Expect = 0.001
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ + E P DD + + ++ ++ D+ + T P ++ ++ + + LK
Sbjct: 219 EAGVELFEQPTPADDLETLREITRRTNVSVMADESVWT-PAEALAVVKAQAADVIALKTT 277
Query: 388 QIGTVTESIQAALDSKSAGWGVMV 411
+ G + ES + A +++ G
Sbjct: 278 KHGGLLESKKIAAIAEAGGLACHG 301
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 327 RDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
I +E P +DD + + + D ++ D+ + T P++ E +Q +S + + +K+
Sbjct: 211 AGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFT-PRQAFEVLQTRSADLINIKL 269
Query: 387 NQIGTVTESIQAALDSKSAGWGVMV 411
+ G ++ + + +++ G MV
Sbjct: 270 MKAGGISGAEKINAMAEACGVECMV 294
Score = 28.0 bits (63), Expect = 7.4
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 51 ARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
A + + + +V V + D GA G EA V G + +
Sbjct: 22 ALRTVYTA--ESVIVRITYDS--------GA-VGWGEAPPT-----LVITGDSMDSIESA 65
Query: 111 INDILGPKLVGVDIRDQAEVDAIM 134
I+ +L P L+G + + +
Sbjct: 66 IHHVLKPALLGKSLAGYEAILHDI 89
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
I IE P DD + A ++S D+ L+ D+ L + + + + I+ ++ + + +K+
Sbjct: 211 HLNIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKS-SREMRQIIKLEAADKVNIKLM 269
Query: 388 QIGTVTESIQAALDSKSAGWGVMV 411
+ G + +++ A ++ AG V
Sbjct: 270 KCGGIYPAVKLAHQAEMAGIECQV 293
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A
{Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A*
3k1g_A* 3kum_A*
Length = 354
Score = 38.4 bits (90), Expect = 0.004
Identities = 16/86 (18%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ D+ I +E P + D + S V+ ++ D+ + E ++K + + + +K
Sbjct: 206 LADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFD-AQDALELVKKGTVDVINIK 264
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+ + G + E+++ ++AG M+
Sbjct: 265 LMKCGGIHEALKINQICETAGIECMI 290
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 38.1 bits (89), Expect = 0.006
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 327 RDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+ IE P D + A + +I +V D+ + K I +++CN + +K+
Sbjct: 212 YSLNVEIIEQPVKYYDIKAMAEITKFSNIPVVADESVFD-AKDAERVIDEQACNMINIKL 270
Query: 387 NQIGTVTESIQAALDSKSAGWGVMV 411
+ G + E+ + + SAG MV
Sbjct: 271 AKTGGILEAQKIKKLADSAGISCMV 295
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase,
PSI, protein structure initiative; 1.42A {Synechococcus
elongatus} PDB: 3h7v_A
Length = 332
Score = 37.7 bits (88), Expect = 0.006
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ I +E P D W + SL +V + D+ +V+ + + + ++K
Sbjct: 189 NGKIEYVEQPLPPDQWQALLSLAQTVTTAIALDESVVS-AAEVQRWVDRGWPGFFVIKTA 247
Query: 388 QIGTVTESIQAALDSKSAGWGVMVS 412
G +S+ L ++ S
Sbjct: 248 LFGDP-DSLSLLLRRGLEPQRLVFS 271
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 37.7 bits (88), Expect = 0.006
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + + IE P D A L+ V + D+ + I K + +GL++K
Sbjct: 212 LEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQE-LHDLLAIINKGAADGLMIK 270
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGA 439
+ G + ++ + ++ A V+ + + A+ I
Sbjct: 271 TQKAGGLLKAQRWLTLARLANLPVIC-GCMVGSGLEASPAAHLLAANDWIAQFP 323
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible
chloromuconate cycloisomerase...; (beta/alpha)8-barrel;
3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Length = 368
Score = 35.7 bits (83), Expect = 0.025
Identities = 14/86 (16%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + I E+P ++ +++ ++ + I ++ D+ IQ ++C+ LK
Sbjct: 207 LEPYNIQHCEEPVSRNLYTALPKIRQACRIPIMADESCCN-SFDAERLIQIQACDSFNLK 265
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMV 411
+++ +T ++ ++ A V V
Sbjct: 266 LSKSAGITNALNIIRLAEQAHMPVQV 291
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain
protein; putative racemase, nysgrc, structural genomics,
PSI-biology; 2.00A {Paracoccus denitrificans}
Length = 391
Score = 34.6 bits (80), Expect = 0.069
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ P V +E P + A+++ V + D+ + A + C+G +K
Sbjct: 233 CPEIPFV-LEQPCN--TLEEIAAIRGRVQHGIYLDESGED-LSTVIRAAGQGLCDGFGMK 288
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVSH 413
+ +IG + + ++
Sbjct: 289 LTRIGGLQQMAAFRDICEARALPHSCDD 316
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 34.2 bits (79), Expect = 0.092
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 334 IEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQIGTVT 393
E P + A+++ + D+ LVT + A + +K+N++G +T
Sbjct: 219 FEQPGE--TLDDIAAIRPLHSAPVSVDECLVT-LQDAARVARDGLAEVFGIKLNRVGGLT 275
Query: 394 ESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERL 446
+ + + + G + V +G + L + A + +
Sbjct: 276 RAARMRDIALTHGIDMFV-MATGGSVLADAEALHLAATIPDHACHAVWACQDM 327
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9440A, enolase superfamily,
PSI-2; 1.80A {Aspergillus oryzae RIB40}
Length = 371
Score = 32.6 bits (75), Expect = 0.26
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++E P W SL+ DI ++ D+L I + + + G+ LK++
Sbjct: 215 HGLDFALEAPCA--TWRECISLRRKTDIPIIYDELATN-EMSIVKILADDAAEGIDLKIS 271
Query: 388 QIGTVTESIQAALDSKSAGWGVMVSH 413
+ G +T + +AG+ V V
Sbjct: 272 KAGGLTRGRRQRDICLAAGYSVSVQE 297
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 32.2 bits (74), Expect = 0.32
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+ I IE PF +L ++ ++ D+ L+ A A +C +K+
Sbjct: 209 ELGIEFIEQPFPAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGIFNIKLM 268
Query: 388 QIGTVTESIQAALDSKSAGWGVMV 411
+ G + + + A +++AG +M
Sbjct: 269 KCGGLAPARRIATIAETAGIDLMW 292
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase,
structural genomics, PSI, protein structu initiative,
nysgrc; 2.00A {Roseovarius nubinhibens}
Length = 379
Score = 32.3 bits (74), Expect = 0.36
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
RD + +E P + ++ D + D+ + + + LK
Sbjct: 212 TRDLDYI-LEQPCRSYE--ECQQVRRVADQPMKLDECVTG-LHMAQRIVADRGAEICCLK 267
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVSH 413
++ +G ++++ + V+
Sbjct: 268 ISNLGGLSKARRTRDFLIDNRMPVVAED 295
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 31.6 bits (72), Expect = 0.49
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 329 FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388
I +E+P D S + I + D+ L +++K
Sbjct: 186 DRIAFLEEPCKTRDDS--RAFARETGIAIAWDESLREPDFAFVAEEG---VRAVVIKPTL 240
Query: 389 IGTVTESIQAALDSKSAGWGVMVS 412
G++ + + + + G ++S
Sbjct: 241 TGSLEKVREQVQAAHALGLTAVIS 264
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 31.9 bits (73), Expect = 0.49
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 326 VRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+ + +E P W+ SL++ + L+ D+L+ T + AI+ C+G+ LK
Sbjct: 217 LPPGLDIVLEAPCA--SWAETKSLRARCALPLLLDELIQT-ETDLIAAIRDDLCDGVGLK 273
Query: 386 VNQIGTVTESIQAALDSKSAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGA 439
V++ G +T ++ + +AG + V + ++ +F A L + ++ +
Sbjct: 274 VSKQGGITPMLRQRAIAAAAGMVMSV-QDTVGSQISFAAILHLAQSTPRHLLRC 326
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
enzyme subgroup, alpha/beta barrel, structural genomics,
isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1
Length = 324
Score = 31.1 bits (71), Expect = 0.69
Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
D + +E P D ++ + + I D + + +K++
Sbjct: 198 DLGVAMLEQPLPAQDDAALENFIHPLPICA---DESCHTRSNLKALKG--RYEMVNIKLD 252
Query: 388 QIGTVTESIQAALDSKSAGWGVMV 411
+ G +TE++ A ++++ G+ +M+
Sbjct: 253 KTGGLTEALALATEARAQGFSLML 276
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006,
struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga
maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Length = 345
Score = 29.9 bits (68), Expect = 1.7
Identities = 11/83 (13%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 329 FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNQ 388
I E P ++D ++ + D+ T + +++++ + + +K+ +
Sbjct: 210 IDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESART-KFDVMRLVKEEAVDYVNIKLMK 268
Query: 389 IGTVTESIQAALDSKSAGWGVMV 411
G +++++ ++S+G +M+
Sbjct: 269 SG-ISDALAIVEIAESSGLKLMI 290
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.9
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 19 KQSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVE 64
KQ+ ++Q S+ A SA ++KA T+E
Sbjct: 19 KQALK-------KLQASLKLYADDSAPALAIKA----------TME 47
Score = 28.4 bits (62), Expect = 2.9
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 172 KHIQELSGTKELVMP--VPAFNVING 195
+ +++L + +L PA I
Sbjct: 20 QALKKLQASLKLYADDSAPAL-AIKA 44
>2rdc_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Length = 153
Score = 27.8 bits (61), Expect = 4.2
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGM 284
H+ I ++YG++ G EGG P + NR D I A + G++ G+
Sbjct: 100 HVFNRYIVKEYGEELKEAGIEGGIFPKPEANR-------DRIAIADWAGELLTGI 147
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 28.9 bits (65), Expect = 4.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
FR VP +T + + SV G + V+ A+K I + P ++G+
Sbjct: 56 FREPVPL-QTTAMDQ-------VSSVMGADENVVEALKTICERQNPSVIGL 98
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 28.6 bits (64), Expect = 5.6
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
F+ + S + E D +V+GG + ++N + + P+++ V
Sbjct: 105 FKEPIAC-VSDSMTE-------DAAVFGGNNNMNLGLQNASALYKPEIIAV 147
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 27.9 bits (63), Expect = 7.3
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 110 NINDILGP--KLVGVDIRDQAEVDAIMLEIDG 139
N+ ILG +LV DI D VD + + D
Sbjct: 47 NLEAILGDRVELVVGDIADAELVDKLAAKADA 78
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 27.8 bits (62), Expect = 8.4
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 73 FRSAVPSGASTGIYEALELRDGDKSVYGG-KGVLNAVKNINDILGPKLVGV 122
FR V S + E D +V+GG + + + ++N P ++ V
Sbjct: 107 FREPVSC-VSDSMTE-------DAAVFGGQQNMKDGLQNCKATYKPDMIAV 149
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.5 bits (62), Expect = 9.1
Identities = 2/33 (6%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 109 KNINDILGPKLVGVDIRDQAEVDAIMLE--IDG 139
+ + + G ++ + D ++
Sbjct: 59 EVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTH 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.375
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,146,775
Number of extensions: 447359
Number of successful extensions: 971
Number of sequences better than 10.0: 1
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 85
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)