BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012042
(472 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum
GN=rio2 PE=3 SV=1
Length = 522
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/322 (58%), Positives = 240/322 (74%), Gaps = 17/322 (5%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKL 60
MKLD LRYLSKDDFR L AVEMGM+NHE+VP L+ IA+LK+GGT K ++ L ++KL
Sbjct: 1 MKLDPKALRYLSKDDFRTLVAVEMGMKNHELVPVSLICTIANLKYGGTKKSIQTLHKFKL 60
Query: 61 LHHDSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAM 120
L HD YDG++LTYLGYDFLA+KTLV+RGV + VG Q+GVGKESDI+ VA +D + +
Sbjct: 61 LFHDGRNYDGYKLTYLGYDFLALKTLVSRGVCSYVGNQIGVGKESDIYIVANDDNQEMVL 120
Query: 121 KLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN 180
KLHRLGR SF+ +K+ RDYL+HR S +WLYLSRLAALKEFA+MKAL ++GFPVP +D N
Sbjct: 121 KLHRLGRVSFKTIKNNRDYLKHRKSASWLYLSRLAALKEFAYMKALYENGFPVPTPIDYN 180
Query: 181 RHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 240
RHC++MS +GYPL Q+ QL++P V+ ++ L+V+LA +GLIH DFNEFNI+I+D+E++
Sbjct: 181 RHCIVMSRARGYPLTQIVQLRHPSKVYSDLMNLIVKLASYGLIHGDFNEFNILINDEEEI 240
Query: 241 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLS 300
T+IDFPQMVS SH NA+MYFDRDV CI FF KRF+ + D +I +
Sbjct: 241 TLIDFPQMVSTSHLNAEMYFDRDVTCIRVFFEKRFNFIGERWPKFKDCQNIHS------- 293
Query: 301 FASISKTAGFLDKELAASGFTR 322
LD E++ASGFTR
Sbjct: 294 ----------LDVEISASGFTR 305
>sp|Q9CQS5|RIOK2_MOUSE Serine/threonine-protein kinase RIO2 OS=Mus musculus GN=Riok2 PE=1
SV=1
Length = 547
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/325 (55%), Positives = 240/325 (73%), Gaps = 18/325 (5%)
Query: 2 KLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLL 61
K++V LRY+S+DDFRVLTAVEMGM+NHEIVP L+ IASLKHGG K+L+ L+++KL+
Sbjct: 3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPCSLIASIASLKHGGCNKILRELVKHKLI 62
Query: 62 HHDSSK-YDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAM 120
+ +K G+RLT GYD+LA+KTL +R V +VG Q+GVGKESDI+ VA E G LA+
Sbjct: 63 AWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEAGQQLAL 122
Query: 121 KLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN 180
KLHRLGRTSFR +K+KRDY +HR++ +WLYLSRL+A+KEFA+MKAL + FPVP +D N
Sbjct: 123 KLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYN 182
Query: 181 RHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 240
RH VIM L+ GYPL Q++ +++P SV++ + L+V+L HGLIH DFNEFN+M+D D+ +
Sbjct: 183 RHAVIMELINGYPLCQIHHVEDPASVYDEAMELIVKLGNHGLIHGDFNEFNLMLDKDDHI 242
Query: 241 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLS 300
TMIDFPQMVS SH NA+ YFDRDV+CI +FF KRF E+ SDI ++
Sbjct: 243 TMIDFPQMVSTSHPNAEWYFDRDVKCIREFFMKRFSY---ESELYPTFSDIRKEDS---- 295
Query: 301 FASISKTAGFLDKELAASGFTRKDQ 325
LD E++ASG+T++ Q
Sbjct: 296 ----------LDVEVSASGYTKEMQ 310
>sp|Q9BVS4|RIOK2_HUMAN Serine/threonine-protein kinase RIO2 OS=Homo sapiens GN=RIOK2 PE=1
SV=2
Length = 552
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/325 (54%), Positives = 237/325 (72%), Gaps = 18/325 (5%)
Query: 2 KLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLL 61
K++V LRY+S+DDFRVLTAVEMGM+NHEIVP L+ IASLKHGG KVL+ L+++KL+
Sbjct: 3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHKLI 62
Query: 62 HHDSSK-YDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAM 120
+ +K G+RLT GYD+LA+KTL +R V +VG Q+GVGKESDI+ VA E+G A+
Sbjct: 63 AWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFAL 122
Query: 121 KLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN 180
KLHRLGRTSFR +K+KRDY +HR++ +WLYLSRL+A+KEFA+MKAL + FPVP +D N
Sbjct: 123 KLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYN 182
Query: 181 RHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 240
RH V+M L+ GYPL Q++ +++P SV++ + L+V+LA HGLIH DFNEFN+++D+ + +
Sbjct: 183 RHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESDHI 242
Query: 241 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLS 300
TMIDFPQMVS SH NA+ YFDRDV+CI FF KRF + D DT
Sbjct: 243 TMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDT------- 295
Query: 301 FASISKTAGFLDKELAASGFTRKDQ 325
LD E++ASG+T++ Q
Sbjct: 296 ----------LDVEVSASGYTKEMQ 310
>sp|Q9P7W5|RIO2_SCHPO Serine/threonine-protein kinase rio2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio2 PE=3 SV=2
Length = 344
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 156/330 (47%), Positives = 220/330 (66%), Gaps = 16/330 (4%)
Query: 3 LDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLH 62
L++ +RYLS +DFR LTAVEMG RNHE+VP+ ++++IA ++ G K L L +KL+
Sbjct: 4 LNIKAMRYLSAEDFRTLTAVEMGSRNHEVVPTNMINQIAKIRGGSCTKSLSVLFMHKLIA 63
Query: 63 H-DSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMK 121
Y+G+RLTY GYD+LA+K L R +VG Q+GVGKESD++ V + G +K
Sbjct: 64 KVPHISYEGYRLTYAGYDYLALKALSKRASVYSVGNQIGVGKESDVYVVGDQKGKQYILK 123
Query: 122 LHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNR 181
+HRLGR SFR+VK+ RDYLR+R + +W YLSRLAA KEFAFMK L +HGFPVP +D +R
Sbjct: 124 IHRLGRISFRSVKNNRDYLRNRKTGSWQYLSRLAATKEFAFMKILHEHGFPVPAPIDHSR 183
Query: 182 HCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVT 241
HC+IM ++ +PL V +++P ++++T++ ++VR A +GLIH DFNEFNI++ +D
Sbjct: 184 HCIIMEMIDAFPLRAVTDIRDPPALYQTLMDIIVRFARNGLIHGDFNEFNIIVREDGTAV 243
Query: 242 MIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLSF 301
+IDFPQMVS SH +AQ YFDRDV+CI ++F K N+Q D + DI E
Sbjct: 244 VIDFPQMVSTSHPDAQFYFDRDVQCIVQYFEK----NYQYKGDVPNFEDISKMEKE---- 295
Query: 302 ASISKTAGFLDKELAASGFTRKDQDVIQKF 331
LD + ASGF +K ++K+
Sbjct: 296 -------NNLDIMIEASGFNKKQSKELEKY 318
>sp|P40160|RIO2_YEAST Serine/threonine-protein kinase RIO2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO2 PE=1 SV=1
Length = 425
Score = 297 bits (761), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 171/416 (41%), Positives = 253/416 (60%), Gaps = 30/416 (7%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLK-HGGTYKVLKNLLRYK 59
MKLD +RYL+ DDFRVL AVE G R+HE+VP+ L+H+I+ ++ GT + + +L +
Sbjct: 1 MKLDTSHMRYLTTDDFRVLQAVEQGSRSHEVVPTPLIHQISGMRSQSGTNRAISDLAKLS 60
Query: 60 LLHH-DSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVL 118
L+ + KYDG+RLTY G D+LA+KT++NR +VG +GVGKESDI++V+ ++G
Sbjct: 61 LISKMRNVKYDGYRLTYNGIDYLALKTMLNRDTVYSVGNTIGVGKESDIYKVSDKNGNPR 120
Query: 119 AMKLHRLGRTSFRAVKSKRDYLRHRNS-YNWLYLSRLAALKEFAFMKALEDHGFPVPNAV 177
MK+HRLGRTSF +V++ RDYL+ N NW++LSRLAA KE+ FM L GF VP
Sbjct: 121 VMKIHRLGRTSFHSVRNNRDYLKKSNQGANWMHLSRLAANKEYQFMSMLYSKGFKVPEPF 180
Query: 178 DCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDD- 236
D +RH V+M L++GYP+ ++ + +N ++ ++ +V LA GLIHCDFNEFNIMI D
Sbjct: 181 DNSRHIVVMELIEGYPMRRLRKHKNIPKLYSDLMCFIVDLANSGLIHCDFNEFNIMIKDK 240
Query: 237 -----DEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDI 291
D +IDFPQ +S+ HQ+A YF RDV+CI +FF+K+ L ++ D S +
Sbjct: 241 LEDENDCGFVVIDFPQCISIQHQDADYYFQRDVDCIRRFFKKK--LKYEPKP---DSSML 295
Query: 292 DTD---EGSRLSFASIS---KTAGFLDKELAASGFTRKDQDVIQKFIGGSIEES-----G 340
DT+ +G + ++ K LD+ + ASGF++K + + ++E
Sbjct: 296 DTEGFGDGYKYAYPDFKRDVKRTDNLDELVQASGFSKKHPG--DRGLETAVESMRNAVYN 353
Query: 341 SDDEGSDDGNESETNETNVDGLDSLHLAEQDVIHKNPDLNSKKEGVSEENQQNSEA 396
SDD+ S+D E E E + D + +E D D +E EEN++ EA
Sbjct: 354 SDDDMSNDEAEEENGEGDYSEEDEYYDSELDNESSEDDSEDAQE---EENERIIEA 406
>sp|Q58473|RIO2_METJA RIO-type serine/threonine-protein kinase Rio2 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio2 PE=3 SV=1
Length = 270
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 15/256 (5%)
Query: 26 MRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDGFRLTYLGYDFLAIKT 85
MR+HE VP + + R A + LK L ++ + + G+ ++ GYD LAI
Sbjct: 1 MRHHEWVPLDEIVRKAKMPEKDVLYRLKRLNKFGFVVRSTY---GYAVSMGGYDALAINA 57
Query: 86 LVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNS 145
V +G+ A+G +LGVGKE D++ V DG +K H+ GRT F K R YL ++
Sbjct: 58 FVKKGILKAIGNKLGVGKEGDVYTVLLSDGREAVLKFHKHGRTCFTRGKRYRGYLADKHH 117
Query: 146 YNWLYLSRLAALKEFAFMKALEDHGFP---VPNAVDCNRHCVIMSLVQGYPL--VQVNQL 200
+WLY+SRL A +EF + L FP VP ++ NRH +IM V G L + +++
Sbjct: 118 ISWLYVSRLTAEREFEILNEL----FPIVKVPEPIEWNRHAIIMGKVVGEELKRLDLSEF 173
Query: 201 QNPDSV---FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQ 257
+ + + F II V + E G IH D +EFNI++D++ +ID+PQ V H +A+
Sbjct: 174 MSKEEIKDLFWKIIEEVKKAYEIGYIHGDLSEFNILLDENGDFVIIDWPQAVPKYHPDAE 233
Query: 258 MYFDRDVECIFKFFRK 273
Y RD+ + ++F+K
Sbjct: 234 FYLKRDIWNVIRYFKK 249
>sp|O30245|RIO2_ARCFU RIO-type serine/threonine-protein kinase Rio2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rio2 PE=1 SV=1
Length = 282
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 144/282 (51%), Gaps = 14/282 (4%)
Query: 11 LSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDG 70
+ K +R++ A+ + ++E VP +L+ A + +LK L +++ + Y+G
Sbjct: 10 MGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEG 69
Query: 71 FRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSF 130
T++G ++ LV G A+G+ +G GKES +F E +K H++G TSF
Sbjct: 70 STFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSF 129
Query: 131 RAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQ 190
+ VK KRDY ++ L+ +A EF ++ L+ G VP + V+M L+
Sbjct: 130 KKVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELID 183
Query: 191 GYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVS 250
L +V +++NPD V + I+ V + G++H D +++N+++ +E + +IDFPQ V
Sbjct: 184 AKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVE 241
Query: 251 VSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDID 292
V + + +RDV I +F + + T+ D S ID
Sbjct: 242 VGEEGWREILERDVRNIITYFSRTYR------TEKDINSAID 277
>sp|P34649|YOT3_CAEEL Putative RIO-type serine/threonine-protein kinase 3
OS=Caenorhabditis elegans GN=riok-3 PE=3 SV=1
Length = 510
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 106/207 (51%), Gaps = 20/207 (9%)
Query: 81 LAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL 140
L + +N+GVF +V + GKES + A++ T A+K+++ T+ K++ +Y+
Sbjct: 235 LLLLKWINQGVFDSVDGIIATGKESAVLHAAQDSATSYAIKVYK---TTLSEFKNRSEYV 291
Query: 141 ----RHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPL 194
R +N L ++ A +EF + + HG P P V R+ ++MS + QG
Sbjct: 292 KDDFRFKNPRGVL---KIWAEREFMNLSRMAKHGLPCPQPVKVRRNVLVMSFLGDQGLAA 348
Query: 195 VQVNQLQ-------NPDSVFETIIGLVVRL-AEHGLIHCDFNEFNIMIDDDEKVTMIDFP 246
++ ++ +V++ + ++ R+ E L+H D +EFN+++ D KV +ID
Sbjct: 349 PRLKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVS 408
Query: 247 QMVSVSHQNAQMYFDRDVECIFKFFRK 273
Q + +SH + + RD++ I FF +
Sbjct: 409 QAMDLSHPRSLQFLTRDIQNIITFFTR 435
>sp|O42650|RIO1_SCHPO Serine/threonine-protein kinase rio1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio1 PE=3 SV=2
Length = 497
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 19/203 (9%)
Query: 86 LVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL----R 141
L+N G + + + GKE++++ EDG A+K++ +TS K + Y+ R
Sbjct: 113 LINNGTISEINGCISTGKEANVYHATNEDGKHFAIKIY---KTSILVFKDRDRYVSGEFR 169
Query: 142 HRNSY---NWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV-----QGYP 193
R+ Y N + RL A KE +K + G P P + +H ++MS + YP
Sbjct: 170 FRHGYNKRNPRKMVRLWAEKEIRNLKRVAAAGIPCPEPILLKQHVLLMSFLGDKKGWAYP 229
Query: 194 -LVQVNQLQNPDSVFETIIGLVVRLAEH--GLIHCDFNEFNIMIDDDEKVTMIDFPQMVS 250
L ++ + ++ +R+ H L+H D +E+N++ KV ID Q V
Sbjct: 230 KLKDIDMTPGEATKLYQLVARNMRILFHVCHLVHADLSEYNLLYHKG-KVYFIDVSQSVE 288
Query: 251 VSHQNAQMYFDRDVECIFKFFRK 273
H + + D+ I FFR+
Sbjct: 289 HDHPQSIDFLRMDILNISTFFRR 311
>sp|O28471|RIO1_ARCFU RIO-type serine/threonine-protein kinase Rio1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rio1 PE=1 SV=1
Length = 258
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 25/212 (11%)
Query: 82 AIKTLVN---RGVFTAVGRQLGVGKESDIFEV-AREDGTVLAM--KLHRLGRTSFRAVKS 135
+KTL +G TA+G + GKE+++F DG +AM K++R+ + F +
Sbjct: 35 TLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMD- 93
Query: 136 KRDYLRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV- 189
+YL ++ +S + KEF ++ ++ G VP ++ ++M +
Sbjct: 94 --EYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIG 151
Query: 190 ----QGYPLVQVN-QLQNPD--SVFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVT 241
LV++ +L+ D +F ++ V RL + L+H D +E+NIM D KV
Sbjct: 152 EDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVY 209
Query: 242 MIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 273
ID Q V++ H A+ Y +RDV I +FF K
Sbjct: 210 FIDMGQAVTLRHPMAESYLERDVRNIIRFFSK 241
>sp|Q9DBU3|RIOK3_MOUSE Serine/threonine-protein kinase RIO3 OS=Mus musculus GN=Riok3 PE=2
SV=3
Length = 519
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 81 LAIKTLVNRGVFTAVGRQLGVGKESDIF-------EVAREDGTVLAMKLH-RLGRTSFRA 132
L + +VN G+ + + GKES +F E +EDG + + ++ +T+
Sbjct: 239 LLMYKMVNSGMLETITGCISTGKESVVFHAYGGSLEDEKEDGKAIPTECAIKVFKTTLNE 298
Query: 133 VKSKRDYL----RHRNSYNWL---YLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVI 185
K++ Y+ R ++ ++ L + R+ A KE + ++ G P P V +H ++
Sbjct: 299 FKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQKAGIPCPTVVLLKKHILV 358
Query: 186 MSLVQGYPLVQVNQLQN--------PDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDD 237
MS + G+ V +L+ D+ ++T+ + E L+H D +E+N M+
Sbjct: 359 MSFI-GHDQVPAPKLKEVKLSNEEMKDAYYQTLHLMQQLYNECTLVHADLSEYN-MLWHA 416
Query: 238 EKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 273
KV +ID Q V +H + + RD + +FF+K
Sbjct: 417 GKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK 452
>sp|Q1RMT7|RIOK3_BOVIN Serine/threonine-protein kinase RIO3 OS=Bos taurus GN=RIOK3 PE=2
SV=1
Length = 519
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 81 LAIKTLVNRGVFTAVGRQLGVGKESDIF-------EVAREDGTVLAMKLH-RLGRTSFRA 132
L + +VN G+ + + GKES +F E +ED V+ + ++ +T+
Sbjct: 239 LLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDGKEDSKVIPTECAIKVFKTTLNE 298
Query: 133 VKSKRDYL----RHRNSYNWL---YLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVI 185
K++ Y+ R ++ ++ L + R+ A KE + ++ G P P V +H ++
Sbjct: 299 FKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQRAGIPCPTVVLLKKHILV 358
Query: 186 MSLVQGYPLVQVNQLQN--------PDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDD 237
MS + G+ V +L+ D+ ++T+ + E L+H D +E+N M+
Sbjct: 359 MSFI-GHDQVPAPKLKEVKLSSEEMKDAYYQTLHLMQQLYDECTLVHADLSEYN-MLWHA 416
Query: 238 EKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 273
KV +ID Q V +H + + RD + +FF+K
Sbjct: 417 GKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK 452
>sp|O14730|RIOK3_HUMAN Serine/threonine-protein kinase RIO3 OS=Homo sapiens GN=RIOK3 PE=1
SV=2
Length = 519
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 81 LAIKTLVNRGVFTAVGRQLGVGKESDIF-------EVAREDGTVLAMKLH-RLGRTSFRA 132
L + +VN G+ + + GKES +F E +ED V+ + ++ +T+
Sbjct: 239 LLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNE 298
Query: 133 VKSKRDYL----RHRNSYNWL---YLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVI 185
K++ Y+ R ++ ++ L + R+ A KE + ++ G P P V +H ++
Sbjct: 299 FKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILV 358
Query: 186 MSLV--QGYPL-----VQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDE 238
MS + P V++N + ++ ++T+ + E L+H D +E+N M+
Sbjct: 359 MSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYN-MLWHAG 417
Query: 239 KVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 273
KV +ID Q V +H + + RD + +FF+K
Sbjct: 418 KVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK 452
>sp|Q9BRS2|RIOK1_HUMAN Serine/threonine-protein kinase RIO1 OS=Homo sapiens GN=RIOK1 PE=1
SV=2
Length = 568
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 86 LVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL----R 141
++ RG+ T + + GKE++++ + +G A+K++ +TS K + Y+ R
Sbjct: 173 MLTRGIITEINGCISTGKEANVYHASTANGESRAIKIY---KTSILVFKDRDKYVSGEFR 229
Query: 142 HRNSY---NWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV----QGYPL 194
R+ Y N + + A KE + L P P + H ++MS + PL
Sbjct: 230 FRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPL 289
Query: 195 VQVNQLQNPDS--VFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFPQMVSV 251
++ QL + ++ +I + R+ + L+H D +EFN M+ V +ID Q V
Sbjct: 290 LKNVQLSESKARELYLQVIQYMRRMYQDARLVHADLSEFN-MLYHGGGVYIIDVSQSVEH 348
Query: 252 SHQNAQMYFDRDVECIFKFF 271
H +A + +D + FF
Sbjct: 349 DHPHALEFLRKDCANVNDFF 368
>sp|Q54VD8|RIO1_DICDI Serine/threonine-protein kinase rio1 OS=Dictyostelium discoideum
GN=rio1 PE=3 SV=1
Length = 574
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 94/205 (45%), Gaps = 12/205 (5%)
Query: 81 LAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSF----RAVKSK 136
L + ++N+G F+ + + GKE++++ + A+K+++ F R V +
Sbjct: 171 LMLFKMINKGAFSEINGCISTGKEANVYHAFTPNEEERAVKVYKTSILVFKDRDRYVTGE 230
Query: 137 RDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPL 194
+ R + +N + ++ A KEF + L++ G P P + H ++M+ + GY
Sbjct: 231 FRFRRGYSKHNPRKMVKVWAEKEFRNLTRLKNAGIPCPTPLILRNHILVMTFIGKDGYAA 290
Query: 195 VQVNQLQNPDSVFETIIGLVVRLA-----EHGLIHCDFNEFNIMIDDDEKVTMIDFPQMV 249
++ F I +++ + L+H D +E+N++ ++ + +ID Q V
Sbjct: 291 PRLKDATVSQEKFGVIYLDCIKMMRTLFHKCRLVHADLSEYNMLYYKNQ-LYIIDVSQSV 349
Query: 250 SVSHQNAQMYFDRDVECIFKFFRKR 274
H ++ + D + FFRK+
Sbjct: 350 EHDHPHSLDFLRMDCSNVTDFFRKK 374
>sp|Q12196|RIO1_YEAST Serine/threonine-protein kinase RIO1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO1 PE=1 SV=1
Length = 484
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 83 IKTLVNRGVFTAVGRQLGVGKESDI-------------------FEVAREDGTVLAMKLH 123
+K++V RGV + L GKE+++ +EV DG+ +
Sbjct: 66 LKSMVTRGVIADLNGCLSTGKEANVYHAFAGTGKAPVIDEETGQYEVLETDGSRAEYAI- 124
Query: 124 RLGRTSFRAVKSKRDYL----RHRNS---YNWLYLSRLAALKEFAFMKALEDHG-FPVPN 175
++ +TS K + Y+ R RNS +N + ++ A KEF +K + G P P
Sbjct: 125 KIYKTSILVFKDRERYVDGEFRFRNSRSQHNPRKMIKIWAEKEFRNLKRIYQSGVIPAPK 184
Query: 176 AVDCNRHCVIMSLVQ-----GYPLVQVNQLQNPDSVF---ETIIGLVVRLAEHG-LIHCD 226
++ + ++M + P ++ +N D +F T++ + L + L+H D
Sbjct: 185 PIEVKNNVLVMEFLSRGNGFASPKLKDYPYKNRDEIFHYYHTMVAYMRLLYQVCRLVHAD 244
Query: 227 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 273
+E+N ++ DD K+ MID Q V H + + D++ + +F K
Sbjct: 245 LSEYNTIVHDD-KLYMIDVSQSVEPEHPMSLDFLRMDIKNVNLYFEK 290
>sp|Q03021|RIO1_THEAC RIO-type serine/threonine-protein kinase Rio1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=rio1 PE=3 SV=1
Length = 186
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 118 LAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFP 172
+A+K+ ++ F ++ R Y+ ++ + + R + KE+ + ALE+ P
Sbjct: 12 VAVKIFKMSTLKFMSI---RKYIEGDQRFSKIRIDRNDIVPVWVRKEYTNLMALENAHVP 68
Query: 173 VPNAVDCNRHCVIMSLV--QGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEF 230
P + ++ ++MS + + P Q+ ++ + +++ +I + R+ + ++H D +E+
Sbjct: 69 APKPIGFFKNILVMSYIGTKSGPAPQLKDVEIDEGIYDQVIDGMRRMYANRIVHADLSEY 128
Query: 231 NIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 273
N++ KV ID Q V + H A + +RD+ + FF+K
Sbjct: 129 NMLFH--RKVYFIDLAQAVDMDHPMAAEFLERDIVNVSNFFQK 169
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 17/203 (8%)
Query: 102 GKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAAL---- 157
GKE+ +F+ AR+ A+K++R+ F K+ Y++ ++ SR +
Sbjct: 85 GKEAVVFK-ARKGKFYRAVKVYRVATCDF---KTMSKYIQGDPRFHLRKSSRRQIIHAWV 140
Query: 158 -KEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPLVQVNQLQNPD--SVFETIIG 212
KEF ++ + P A + ++M V +G P ++ +Q+ D F+ I
Sbjct: 141 EKEFRNLRRASE-IINAPKARLRRENVLVMDFVGYRGIPAPKLKDMQDLDWEKYFKIIKE 199
Query: 213 LVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFF 271
+ +L E G L+H D +E+NI++ DDE V IDF Q V H A RD I FF
Sbjct: 200 SMKKLYEEGELVHGDLSEYNILVKDDEPV-FIDFSQSVITQHPLAHPLLIRDCINICNFF 258
Query: 272 -RKRFHLNFQETTDGDDGSDIDT 293
RKR N+++ G +ID
Sbjct: 259 RRKRVDCNYKDLYKYITGKEIDP 281
>sp|Q8SVI7|RIO1_ENCCU Probable serine/threonine-protein kinase RIO1 homolog
OS=Encephalitozoon cuniculi (strain GB-M1) GN=RIO1 PE=3
SV=1
Length = 409
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 33/224 (14%)
Query: 82 AIKTLVNRGVFTAVGRQLGVGKESDIF---------------------EVAREDGTV-LA 119
++ L RG + L GKES+++ E RE V +
Sbjct: 52 VLERLQARGKLVNLQGSLCTGKESNVYLGEASTSLCSKFIKNRYSVTEEPGREGQIVPVV 111
Query: 120 MKLHRLGRTSFR----AVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPN 175
+K+ + SFR ++S++ + R S N L ++ A KE +K L + G P P
Sbjct: 112 VKIFKTSIMSFRDRERYIRSEKRFQRFCTS-NSRKLIKVWAEKEVRNLKRLNNAGIPSPE 170
Query: 176 AVDCNRHCVIMSLV----QGYPLVQVNQLQNPDSVFETIIGLVVRL-AEHGLIHCDFNEF 230
+ + ++M+ + + P ++ +++ + ++ + ++ + + GL+H D +EF
Sbjct: 171 PIYLKNNILVMTQIGRCSEVAPRLRDASIKDLEGCYQQCVKIIRDMYKKAGLVHADLSEF 230
Query: 231 NIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKR 274
N++ + V +ID Q V + H NAQ + D+ I FF ++
Sbjct: 231 NLLYFEGV-VYVIDVGQSVEIDHDNAQRFLIMDINNINSFFSRK 273
>sp|Q922Q2|RIOK1_MOUSE Serine/threonine-protein kinase RIO1 OS=Mus musculus GN=Riok1 PE=2
SV=2
Length = 567
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 99 LGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL----RHRNSY---NWLYL 151
+ GKE++++ + G A+K+++ TS K + Y+ R R Y N +
Sbjct: 185 ISTGKEANVYYASTPSGESRAIKIYK---TSILMFKDRDKYVTGEFRFRRGYCKGNPRKM 241
Query: 152 SRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV----QGYPLVQVNQLQNPDS-- 205
R A KE + L+ P P + H ++M + PL++ QL +
Sbjct: 242 VRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDDMPAPLLKNVQLSESKARE 301
Query: 206 VFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDV 264
++ +I + ++ + L+H D +EFN++ + V +ID Q V H +A + +D
Sbjct: 302 LYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGD-VYIIDVSQSVEHDHPHALEFLRKDC 360
Query: 265 ECIFKFFRK 273
+ FF K
Sbjct: 361 TNVNDFFSK 369
>sp|Q5H410|KDKA_XANOR 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 137 RDYLR-------HRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NR 181
R YLR R+ Y W R + EF M+ L PVP + R
Sbjct: 70 RQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYR 129
Query: 182 HCVIMSLVQGY-PLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 240
++M ++ L QL + +E L+ R GL H D N NI+ D
Sbjct: 130 AALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHNILFDAGGHG 189
Query: 241 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTD 294
+IDF + V A + +R++ KR H + + G D+D D
Sbjct: 190 WLIDFDR--GVLRIPATRWRERNL--------KRLHRSLLKLRGNRSGEDVDKD 233
>sp|B2SLU1|KDKA_XANOP 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 137 RDYLR-------HRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NR 181
R YLR R+ Y W R + EF M+ L PVP + R
Sbjct: 70 RQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYR 129
Query: 182 HCVIMSLVQGY-PLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 240
++M ++ L QL + +E L+ R GL H D N NI+ D
Sbjct: 130 AALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHNILFDAGGHG 189
Query: 241 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTD 294
+IDF + V A + +R++ KR H + + G D+D D
Sbjct: 190 WLIDFDR--GVLRIPATRWRERNL--------KRLHRSLLKLRGNRSGEDVDKD 233
>sp|Q2P6W5|KDKA_XANOM 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 137 RDYLR-------HRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NR 181
R YLR R+ Y W R + EF M+ L PVP + R
Sbjct: 70 RQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYR 129
Query: 182 HCVIMSLVQGY-PLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 240
++M ++ L QL + +E L+ R GL H D N NI+ D
Sbjct: 130 AALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHNILFDAGGHG 189
Query: 241 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTD 294
+IDF + V A + +R++ KR H + + G D+D D
Sbjct: 190 WLIDFDR--GVLRIPATRWRERNL--------KRLHRSLLKLRGNRSGEDVDKD 233
>sp|B0U358|KDKA_XYLFM 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain M12) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 143 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 202
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRYGVQYRAAILIERLEG 139
Query: 203 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCIRGNSKETHWEQIGRMISRFHREGLDHADLNAHNILLDPAGQCWLIDF 194
>sp|Q9PBJ1|KDKA_XYLFA 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain 9a5c) GN=kdkA PE=3 SV=2
Length = 249
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 143 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 202
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRYGVQYRAAILMERLEG 139
Query: 203 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCVRGNSKETHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|Q87C81|KDKA_XYLFT 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=kdkA PE=3 SV=2
Length = 249
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 143 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 202
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRHGVQYRAAILMERLEG 139
Query: 203 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCVRGNSKEIHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|B2I5R8|KDKA_XYLF2 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain M23) GN=kdkA PE=3 SV=1
Length = 249
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 143 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 202
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRHGVQYRAAILMERLEG 139
Query: 203 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCVRGNSKEIHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|B2FR65|KDKA_STRMK 3-deoxy-D-manno-octulosonic acid kinase OS=Stenotrophomonas
maltophilia (strain K279a) GN=kdkA PE=3 SV=1
Length = 249
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 144 NSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN--------RHCVIMSLVQGY-PL 194
+ Y W R + EF M+AL + PVP + R ++M ++G L
Sbjct: 84 DQYLWRGSDRTRSFAEFRLMRALREKKLPVPRPIAAYYMREGLRYRAAILMERIEGVRSL 143
Query: 195 VQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQ 254
+ + +E L+ R GL H D N NI+ D + +IDF + V
Sbjct: 144 ADRALVAGRGAPWEETGRLIARFHRAGLDHADLNAHNILFDGNGHGWLIDFDR--GVIRI 201
Query: 255 NAQMYFDRDVECIFK 269
A + +R+++ + +
Sbjct: 202 PATAWRERNLKRLLR 216
>sp|B4SLP5|KDKA_STRM5 3-deoxy-D-manno-octulosonic acid kinase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=kdkA PE=3 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 144 NSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NRHCVIMSLVQGY-PL 194
+ Y W R + EF M+AL + PVP + R ++M ++G L
Sbjct: 84 DQYLWRGADRTRSFAEFRLMRALREKKLPVPRPLAAFYMREGLRYRAAILMERIEGVRSL 143
Query: 195 VQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMV 249
+ + +E L+ R GL H D N NI+ D + +IDF + V
Sbjct: 144 ADRALVAGRGAPWEETGRLIARFHRAGLDHADLNAHNILFDGNGHGWLIDFDRGV 198
>sp|Q9KVB9|KDKA_VIBCH 3-deoxy-D-manno-octulosonic acid kinase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=kdkA
PE=3 SV=2
Length = 235
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 24/159 (15%)
Query: 109 EVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRH-----------RNSYNWLYLSRLAAL 157
E +++G VL R G T F ++ + LRH +SY + + +
Sbjct: 30 EFWQQNGKVLGSATGR-GTTWFVQLQQTQGALRHYRRGGLFGKLVADSYWFTGWEKTRSY 88
Query: 158 KEFAFMKALEDHGF--PVPNAVDCNRHCVIMS---LVQGYP----LVQVNQLQNP--DSV 206
+EF + L D G P P A +H ++ L + P LV + Q ++P D +
Sbjct: 89 QEFMLLNHLRDAGVNVPRPIAARVQKHGLLYKADLLSEKVPNARDLVSILQ-ESPISDEL 147
Query: 207 FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+ I + ++ + + H D N NI+IDD EKV +IDF
Sbjct: 148 YRKIGREIRKMHDAQVNHTDLNIHNILIDDQEKVWIIDF 186
>sp|Q87T74|KDKA_VIBPA 3-deoxy-D-manno-octulosonic acid kinase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=kdkA PE=3 SV=1
Length = 238
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 173 VPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNI 232
+PNA D ++S++Q PL P+ +++ I + ++ G+ H D N NI
Sbjct: 128 IPNARD------LVSILQEKPL--------PEGMYQKIGQEIAKMHNAGVNHTDLNIHNI 173
Query: 233 MIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRF 275
+IDD +KV +IDF + H + + +++E + + F+K
Sbjct: 174 LIDDKDKVWIIDFDKCRKQEHGD---WKKQNLERLLRSFKKEL 213
>sp|Q3UGM2|NEK10_MOUSE Serine/threonine-protein kinase Nek10 OS=Mus musculus GN=Nek10 PE=2
SV=2
Length = 1111
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 35/171 (20%)
Query: 94 AVGRQLGVGKESDIFEVAREDG-TVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLS 152
AV LG G +++V + G +LAMK L +F K K+D R+S +S
Sbjct: 520 AVLDHLGSGAFGCVYKVRKRSGQNLLAMKEVNLHNPAFG--KDKKD----RDSSVKNIVS 573
Query: 153 RLAALKEFAFMKALEDHGFPVPNAV-------DCNRHCVIMSLVQGYPLVQ-VNQLQ--- 201
L +KE + PN V + +R ++M L++G PL + N L+
Sbjct: 574 ELTIIKEQLYH----------PNVVRYYKTFLENDRLYIVMELIEGAPLGEHFNSLKEKH 623
Query: 202 ---NPDSVFETIIGLVVRL----AEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+ + +++ I L + L E ++H D NIM+ D +KVT+ DF
Sbjct: 624 HHFSEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDF 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,184,208
Number of Sequences: 539616
Number of extensions: 7800020
Number of successful extensions: 43005
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 724
Number of HSP's that attempted gapping in prelim test: 35120
Number of HSP's gapped (non-prelim): 3846
length of query: 472
length of database: 191,569,459
effective HSP length: 121
effective length of query: 351
effective length of database: 126,275,923
effective search space: 44322848973
effective search space used: 44322848973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)