Query 012043
Match_columns 472
No_of_seqs 349 out of 2234
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11895 ilvH acetolactate syn 100.0 6.2E-52 1.3E-56 382.7 20.8 157 78-234 1-159 (161)
2 TIGR00119 acolac_sm acetolacta 100.0 1.9E-51 4.2E-56 378.0 20.0 155 79-233 1-157 (157)
3 CHL00100 ilvH acetohydroxyacid 100.0 1.2E-51 2.5E-56 385.0 17.6 167 78-244 1-169 (174)
4 COG0440 IlvH Acetolactate synt 100.0 3.3E-51 7.2E-56 377.4 16.8 159 77-235 2-162 (163)
5 KOG2663 Acetolactate synthase, 100.0 8.4E-52 1.8E-56 402.0 2.8 236 74-364 72-309 (309)
6 PRK11895 ilvH acetolactate syn 100.0 2.7E-48 5.9E-53 358.5 16.4 147 313-459 1-159 (161)
7 CHL00100 ilvH acetohydroxyacid 100.0 9.6E-49 2.1E-53 365.5 13.1 157 313-469 1-169 (174)
8 COG0440 IlvH Acetolactate synt 100.0 2.6E-48 5.7E-53 358.2 12.8 148 312-459 2-161 (163)
9 TIGR00119 acolac_sm acetolacta 100.0 9.9E-48 2.1E-52 353.4 15.7 145 314-458 1-157 (157)
10 PRK08178 acetolactate synthase 100.0 1E-32 2.2E-37 236.0 11.6 90 309-399 3-92 (96)
11 KOG2663 Acetolactate synthase, 100.0 9.2E-34 2E-38 276.3 3.7 136 311-458 74-218 (309)
12 PRK13562 acetolactate synthase 100.0 1.7E-32 3.7E-37 229.5 10.2 80 313-392 1-83 (84)
13 PRK06737 acetolactate synthase 100.0 9.1E-31 2E-35 215.6 10.6 76 313-388 1-76 (76)
14 PRK08178 acetolactate synthase 100.0 3.6E-29 7.9E-34 214.1 10.1 85 77-162 6-92 (96)
15 PRK13562 acetolactate synthase 100.0 3.9E-29 8.6E-34 209.3 9.6 78 78-155 1-83 (84)
16 PRK11152 ilvM acetolactate syn 100.0 9.7E-29 2.1E-33 203.5 10.5 75 312-387 1-75 (76)
17 PRK06737 acetolactate synthase 99.9 9.5E-28 2E-32 197.7 10.0 74 78-151 1-76 (76)
18 PRK11152 ilvM acetolactate syn 99.9 5.4E-26 1.2E-30 187.2 9.8 73 77-150 1-75 (76)
19 PF10369 ALS_ss_C: Small subun 99.9 1.2E-25 2.6E-30 183.9 7.6 75 158-232 1-75 (75)
20 PF13710 ACT_5: ACT domain; PD 99.9 3.5E-23 7.5E-28 164.0 8.5 63 323-385 1-63 (63)
21 PF13710 ACT_5: ACT domain; PD 99.8 7.8E-21 1.7E-25 150.6 8.0 61 88-148 1-63 (63)
22 PF10369 ALS_ss_C: Small subun 99.8 1.5E-19 3.3E-24 148.0 3.7 63 395-457 1-75 (75)
23 COG3978 Acetolactate synthase 98.9 2.8E-09 6.2E-14 89.3 7.7 77 312-389 1-77 (86)
24 COG3978 Acetolactate synthase 98.9 3E-09 6.5E-14 89.1 7.4 75 77-152 1-77 (86)
25 PF01842 ACT: ACT domain; Int 98.9 8.7E-09 1.9E-13 78.5 8.0 66 315-381 1-66 (66)
26 cd04878 ACT_AHAS N-terminal AC 98.8 4.2E-08 9.2E-13 74.8 9.7 71 315-385 1-71 (72)
27 PF01842 ACT: ACT domain; Int 98.7 4.1E-08 8.8E-13 74.8 7.9 65 80-144 1-66 (66)
28 PRK06349 homoserine dehydrogen 98.6 8.6E-08 1.9E-12 100.7 8.8 73 312-385 346-419 (426)
29 PF13291 ACT_4: ACT domain; PD 98.6 4.8E-07 1E-11 73.1 10.9 73 314-386 6-79 (80)
30 cd04879 ACT_3PGDH-like ACT_3PG 98.6 1.7E-07 3.8E-12 71.0 7.9 71 316-388 1-71 (71)
31 cd04878 ACT_AHAS N-terminal AC 98.6 3.2E-07 7E-12 69.9 9.3 69 80-148 1-71 (72)
32 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.5 3.2E-07 6.9E-12 71.1 7.7 71 315-385 1-72 (79)
33 cd04903 ACT_LSD C-terminal ACT 98.5 5.4E-07 1.2E-11 68.7 7.8 71 316-388 1-71 (71)
34 cd04908 ACT_Bt0572_1 N-termina 98.5 6.9E-07 1.5E-11 70.1 8.3 46 315-360 2-47 (66)
35 cd04908 ACT_Bt0572_1 N-termina 98.5 9.6E-07 2.1E-11 69.3 8.5 46 80-125 2-47 (66)
36 cd04879 ACT_3PGDH-like ACT_3PG 98.4 8.5E-07 1.8E-11 67.2 7.2 68 82-151 2-71 (71)
37 PRK06349 homoserine dehydrogen 98.4 6.2E-07 1.3E-11 94.3 8.6 75 74-148 343-419 (426)
38 PF13291 ACT_4: ACT domain; PD 98.4 2.5E-06 5.5E-11 68.9 10.0 71 78-149 5-79 (80)
39 PRK08577 hypothetical protein; 98.4 3.7E-06 8.1E-11 75.4 11.1 76 313-388 55-132 (136)
40 cd04874 ACT_Af1403 N-terminal 98.3 5.2E-06 1.1E-10 63.6 9.3 70 316-387 2-71 (72)
41 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.3 2.8E-06 6.1E-11 65.8 7.7 70 80-149 1-73 (79)
42 cd04903 ACT_LSD C-terminal ACT 98.3 2.7E-06 5.8E-11 64.8 7.3 69 81-151 1-71 (71)
43 cd04888 ACT_PheB-BS C-terminal 98.3 7.8E-06 1.7E-10 64.5 9.9 72 316-388 2-75 (76)
44 cd04901 ACT_3PGDH C-terminal A 98.3 1.4E-06 3E-11 67.6 5.2 68 82-151 2-69 (69)
45 cd04901 ACT_3PGDH C-terminal A 98.2 2.5E-06 5.4E-11 66.1 5.8 68 317-388 2-69 (69)
46 PRK08577 hypothetical protein; 98.2 9.6E-06 2.1E-10 72.8 10.2 76 76-151 53-132 (136)
47 cd04902 ACT_3PGDH-xct C-termin 98.2 4.6E-06 9.9E-11 65.0 6.9 71 317-389 2-72 (73)
48 PRK11589 gcvR glycine cleavage 98.2 5.6E-05 1.2E-09 72.4 15.1 64 76-139 5-68 (190)
49 cd04874 ACT_Af1403 N-terminal 98.2 1.5E-05 3.2E-10 61.0 8.8 69 81-150 2-71 (72)
50 cd04888 ACT_PheB-BS C-terminal 98.1 1.4E-05 3.1E-10 63.0 8.6 71 81-151 2-75 (76)
51 cd04887 ACT_MalLac-Enz ACT_Mal 98.1 1.7E-05 3.6E-10 62.6 9.0 68 316-384 1-69 (74)
52 cd04876 ACT_RelA-SpoT ACT dom 98.1 3.1E-05 6.7E-10 56.7 9.4 69 317-386 1-70 (71)
53 PRK00194 hypothetical protein; 98.1 6.7E-06 1.4E-10 68.0 5.4 73 77-149 1-75 (90)
54 PRK00194 hypothetical protein; 98.1 6.6E-06 1.4E-10 68.0 5.4 73 312-386 1-75 (90)
55 cd04877 ACT_TyrR N-terminal AC 98.1 3.7E-05 8E-10 61.7 9.5 70 316-389 2-71 (74)
56 cd04902 ACT_3PGDH-xct C-termin 98.0 1.5E-05 3.3E-10 62.1 6.9 69 82-152 2-72 (73)
57 cd04889 ACT_PDH-BS-like C-term 98.0 1.4E-05 3.1E-10 60.4 6.2 46 82-127 1-47 (56)
58 cd04883 ACT_AcuB C-terminal AC 98.0 2.6E-05 5.6E-10 61.0 7.9 61 316-378 3-63 (72)
59 cd04889 ACT_PDH-BS-like C-term 98.0 1.7E-05 3.7E-10 59.9 6.2 47 317-364 1-47 (56)
60 PRK04435 hypothetical protein; 98.0 4.8E-05 1E-09 69.8 9.9 74 79-152 69-145 (147)
61 cd02116 ACT ACT domains are co 98.0 4.5E-05 9.7E-10 52.8 7.3 59 317-376 1-59 (60)
62 PRK04435 hypothetical protein; 98.0 9.1E-05 2E-09 68.0 11.3 76 313-389 68-145 (147)
63 cd04877 ACT_TyrR N-terminal AC 97.9 5.6E-05 1.2E-09 60.7 8.7 70 81-152 2-71 (74)
64 COG4747 ACT domain-containing 97.9 2.6E-05 5.7E-10 70.5 7.4 124 77-219 1-132 (142)
65 cd04880 ACT_AAAH-PDT-like ACT 97.9 8.1E-05 1.8E-09 59.5 8.8 67 317-383 2-71 (75)
66 cd04886 ACT_ThrD-II-like C-ter 97.9 5.2E-05 1.1E-09 57.8 7.4 63 317-379 1-67 (73)
67 cd04887 ACT_MalLac-Enz ACT_Mal 97.9 8.4E-05 1.8E-09 58.6 8.6 66 81-147 1-69 (74)
68 cd04905 ACT_CM-PDT C-terminal 97.9 0.00013 2.7E-09 59.4 9.6 67 315-381 2-71 (80)
69 cd04869 ACT_GcvR_2 ACT domains 97.9 4.8E-05 1E-09 61.1 7.0 64 317-380 2-70 (81)
70 cd04876 ACT_RelA-SpoT ACT dom 97.9 0.00011 2.5E-09 53.6 8.4 68 82-149 1-70 (71)
71 cd04909 ACT_PDH-BS C-terminal 97.9 7.1E-05 1.5E-09 58.5 7.6 63 315-378 2-64 (69)
72 cd04909 ACT_PDH-BS C-terminal 97.8 8.4E-05 1.8E-09 58.1 7.5 61 80-141 2-64 (69)
73 cd04884 ACT_CBS C-terminal ACT 97.8 0.00012 2.6E-09 58.1 8.3 67 317-383 2-70 (72)
74 cd04905 ACT_CM-PDT C-terminal 97.8 0.00015 3.3E-09 58.9 9.0 65 80-144 2-71 (80)
75 cd04883 ACT_AcuB C-terminal AC 97.8 0.00011 2.5E-09 57.4 7.8 59 81-141 3-63 (72)
76 cd04872 ACT_1ZPV ACT domain pr 97.8 4.1E-05 8.9E-10 63.4 5.1 69 79-149 1-73 (88)
77 cd04869 ACT_GcvR_2 ACT domains 97.7 0.0001 2.2E-09 59.1 7.0 62 82-143 2-70 (81)
78 cd04880 ACT_AAAH-PDT-like ACT 97.7 0.00019 4.2E-09 57.4 8.5 64 82-145 2-70 (75)
79 cd04872 ACT_1ZPV ACT domain pr 97.7 4.7E-05 1E-09 63.0 5.0 70 314-385 1-72 (88)
80 cd04882 ACT_Bt0572_2 C-termina 97.7 0.00013 2.7E-09 55.6 6.6 48 317-364 2-49 (65)
81 cd04884 ACT_CBS C-terminal ACT 97.7 0.00024 5.2E-09 56.4 8.0 63 82-145 2-69 (72)
82 cd04886 ACT_ThrD-II-like C-ter 97.6 0.00026 5.7E-09 53.9 7.1 61 82-142 1-67 (73)
83 cd04875 ACT_F4HF-DF N-terminal 97.5 0.00025 5.4E-09 56.7 6.4 65 316-380 1-67 (74)
84 cd04900 ACT_UUR-like_1 ACT dom 97.5 0.00063 1.4E-08 54.6 8.6 64 315-378 2-71 (73)
85 PF13740 ACT_6: ACT domain; PD 97.5 0.00049 1.1E-08 55.9 8.0 64 79-142 2-65 (76)
86 PRK11092 bifunctional (p)ppGpp 97.5 0.00065 1.4E-08 76.4 11.5 90 294-388 610-700 (702)
87 cd04875 ACT_F4HF-DF N-terminal 97.5 0.00031 6.7E-09 56.2 6.4 63 81-143 1-67 (74)
88 cd02116 ACT ACT domains are co 97.5 0.0006 1.3E-08 47.1 7.0 57 82-139 1-59 (60)
89 cd04882 ACT_Bt0572_2 C-termina 97.5 0.00043 9.4E-09 52.7 6.8 46 82-127 2-49 (65)
90 cd04873 ACT_UUR-ACR-like ACT d 97.5 0.00074 1.6E-08 51.8 8.1 49 81-129 2-50 (70)
91 cd04873 ACT_UUR-ACR-like ACT d 97.4 0.0011 2.4E-08 50.8 8.5 59 316-376 2-66 (70)
92 cd04870 ACT_PSP_1 CT domains f 97.4 0.0004 8.6E-09 56.0 6.2 63 82-144 2-65 (75)
93 cd04870 ACT_PSP_1 CT domains f 97.4 0.00042 9E-09 55.9 6.0 62 317-380 2-64 (75)
94 cd04925 ACT_ACR_2 ACT domain-c 97.4 0.00097 2.1E-08 54.0 7.9 64 316-380 2-72 (74)
95 cd04899 ACT_ACR-UUR-like_2 C-t 97.3 0.0015 3.2E-08 50.8 8.3 61 81-141 2-68 (70)
96 PRK07431 aspartate kinase; Pro 97.3 0.023 5E-07 62.3 20.4 269 85-433 277-559 (587)
97 PRK10872 relA (p)ppGpp synthet 97.3 0.0015 3.3E-08 73.9 11.4 91 294-388 650-741 (743)
98 PRK05092 PII uridylyl-transfer 97.3 0.013 2.7E-07 67.9 18.8 66 315-381 844-915 (931)
99 TIGR00691 spoT_relA (p)ppGpp s 97.3 0.0015 3.3E-08 73.1 11.1 88 294-386 594-682 (683)
100 cd04927 ACT_ACR-like_2 Second 97.3 0.0014 3.1E-08 53.5 8.1 63 316-378 2-69 (76)
101 PF13740 ACT_6: ACT domain; PD 97.3 0.0023 5.1E-08 51.9 9.0 64 314-379 2-65 (76)
102 COG4492 PheB ACT domain-contai 97.2 0.0016 3.5E-08 60.0 8.7 77 76-152 69-148 (150)
103 cd04926 ACT_ACR_4 C-terminal 97.2 0.0019 4.1E-08 51.9 8.2 45 81-125 3-47 (72)
104 COG4492 PheB ACT domain-contai 97.2 0.002 4.3E-08 59.4 8.9 76 313-389 71-148 (150)
105 cd04900 ACT_UUR-like_1 ACT dom 97.2 0.0027 5.9E-08 50.9 8.6 61 81-141 3-71 (73)
106 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0035 7.7E-08 48.7 8.8 62 316-379 2-69 (70)
107 cd04925 ACT_ACR_2 ACT domain-c 97.2 0.0021 4.6E-08 52.0 7.8 62 81-142 2-71 (74)
108 COG4747 ACT domain-containing 97.1 0.0011 2.4E-08 60.2 5.9 61 312-375 1-61 (142)
109 cd04893 ACT_GcvR_1 ACT domains 97.0 0.0019 4.2E-08 52.6 6.7 63 80-142 2-64 (77)
110 cd04927 ACT_ACR-like_2 Second 97.0 0.0033 7.2E-08 51.4 7.6 61 81-141 2-69 (76)
111 cd04904 ACT_AAAH ACT domain of 97.0 0.0054 1.2E-07 49.7 8.7 67 81-147 2-71 (74)
112 cd04904 ACT_AAAH ACT domain of 97.0 0.0061 1.3E-07 49.4 9.0 69 316-384 2-71 (74)
113 cd04926 ACT_ACR_4 C-terminal 97.0 0.0036 7.8E-08 50.3 7.5 46 316-363 3-48 (72)
114 cd04928 ACT_TyrKc Uncharacteri 97.0 0.0049 1.1E-07 50.4 8.2 49 315-363 2-50 (68)
115 cd04930 ACT_TH ACT domain of t 97.0 0.0064 1.4E-07 54.1 9.6 73 313-385 40-113 (115)
116 PRK03381 PII uridylyl-transfer 96.9 0.03 6.5E-07 63.8 16.9 50 314-364 707-756 (774)
117 TIGR01693 UTase_glnD [Protein- 96.8 0.049 1.1E-06 62.4 18.0 65 314-378 779-847 (850)
118 COG1707 ACT domain-containing 96.8 0.0052 1.1E-07 58.9 8.2 83 314-397 2-84 (218)
119 cd04893 ACT_GcvR_1 ACT domains 96.8 0.0048 1E-07 50.3 6.8 63 315-379 2-64 (77)
120 PRK13011 formyltetrahydrofolat 96.8 0.0046 1E-07 62.6 8.0 70 75-144 3-75 (286)
121 PRK03059 PII uridylyl-transfer 96.6 0.063 1.4E-06 61.9 17.0 67 315-382 787-856 (856)
122 PRK11790 D-3-phosphoglycerate 96.6 0.0034 7.4E-08 66.3 6.4 72 78-151 337-408 (409)
123 PRK13011 formyltetrahydrofolat 96.6 0.0065 1.4E-07 61.6 8.1 71 310-380 3-74 (286)
124 PRK06027 purU formyltetrahydro 96.6 0.0088 1.9E-07 60.5 9.0 70 311-380 3-74 (286)
125 cd04895 ACT_ACR_1 ACT domain-c 96.6 0.012 2.7E-07 48.5 8.2 62 315-377 2-69 (72)
126 cd04931 ACT_PAH ACT domain of 96.6 0.013 2.8E-07 50.1 8.4 68 313-380 13-82 (90)
127 COG0317 SpoT Guanosine polypho 96.6 0.013 2.8E-07 66.0 10.8 88 295-387 612-700 (701)
128 PRK06027 purU formyltetrahydro 96.6 0.0051 1.1E-07 62.2 7.0 69 76-144 3-75 (286)
129 PRK00275 glnD PII uridylyl-tra 96.6 0.062 1.3E-06 62.3 16.5 65 315-380 815-885 (895)
130 cd04895 ACT_ACR_1 ACT domain-c 96.5 0.014 3E-07 48.2 8.0 61 80-140 2-69 (72)
131 cd04928 ACT_TyrKc Uncharacteri 96.5 0.015 3.2E-07 47.6 8.0 47 80-126 2-49 (68)
132 cd04930 ACT_TH ACT domain of t 96.5 0.018 3.9E-07 51.3 9.1 70 79-148 41-113 (115)
133 PRK05007 PII uridylyl-transfer 96.4 0.1 2.2E-06 60.5 16.8 66 314-380 808-878 (884)
134 cd04931 ACT_PAH ACT domain of 96.3 0.022 4.8E-07 48.7 7.9 64 78-141 13-80 (90)
135 PRK11790 D-3-phosphoglycerate 96.2 0.0093 2E-07 63.0 6.8 72 313-388 337-408 (409)
136 COG1707 ACT domain-containing 96.2 0.017 3.7E-07 55.4 7.7 81 79-160 2-84 (218)
137 PRK11092 bifunctional (p)ppGpp 96.2 0.022 4.8E-07 64.4 9.7 72 79-151 626-700 (702)
138 PRK13581 D-3-phosphoglycerate 96.2 0.011 2.3E-07 64.4 6.8 74 78-151 451-524 (526)
139 cd04896 ACT_ACR-like_3 ACT dom 96.1 0.024 5.3E-07 47.2 7.3 63 316-378 2-70 (75)
140 cd04896 ACT_ACR-like_3 ACT dom 96.1 0.022 4.9E-07 47.4 7.0 61 81-141 2-70 (75)
141 PRK07334 threonine dehydratase 96.1 0.027 5.9E-07 59.0 9.2 79 294-379 313-395 (403)
142 cd04885 ACT_ThrD-I Tandem C-te 96.1 0.027 5.9E-07 44.6 7.1 60 317-378 1-61 (68)
143 TIGR00719 sda_beta L-serine de 96.1 0.016 3.6E-07 55.9 6.9 57 315-371 149-207 (208)
144 PRK07431 aspartate kinase; Pro 96.0 0.32 7E-06 53.5 17.4 51 322-380 530-580 (587)
145 PRK11589 gcvR glycine cleavage 96.0 0.036 7.8E-07 53.4 8.8 114 313-430 7-129 (190)
146 TIGR01127 ilvA_1Cterm threonin 95.9 0.033 7.2E-07 57.6 9.0 67 313-379 304-374 (380)
147 cd04897 ACT_ACR_3 ACT domain-c 95.9 0.03 6.6E-07 46.6 6.9 62 81-142 3-71 (75)
148 PRK13010 purU formyltetrahydro 95.9 0.086 1.9E-06 53.7 11.6 80 309-388 4-90 (289)
149 cd04929 ACT_TPH ACT domain of 95.9 0.045 9.8E-07 45.0 7.8 61 81-141 2-65 (74)
150 cd04929 ACT_TPH ACT domain of 95.9 0.052 1.1E-06 44.7 8.1 63 316-378 2-65 (74)
151 PRK10872 relA (p)ppGpp synthet 95.8 0.04 8.6E-07 62.8 9.8 72 80-151 667-741 (743)
152 TIGR00691 spoT_relA (p)ppGpp s 95.8 0.036 7.8E-07 62.4 9.4 70 79-149 610-682 (683)
153 PRK04374 PII uridylyl-transfer 95.8 0.22 4.8E-06 57.7 15.9 67 314-381 796-867 (869)
154 TIGR00719 sda_beta L-serine de 95.7 0.025 5.5E-07 54.6 6.6 56 79-134 148-207 (208)
155 PRK11899 prephenate dehydratas 95.7 0.06 1.3E-06 54.6 9.4 71 314-384 194-267 (279)
156 PRK13581 D-3-phosphoglycerate 95.6 0.025 5.4E-07 61.6 6.7 73 314-388 452-524 (526)
157 COG2150 Predicted regulator of 95.6 0.037 8E-07 52.5 6.8 71 314-386 93-165 (167)
158 COG2716 GcvR Glycine cleavage 95.5 0.018 3.9E-07 55.1 4.7 71 78-149 91-169 (176)
159 cd04897 ACT_ACR_3 ACT domain-c 95.5 0.064 1.4E-06 44.7 7.3 64 315-379 2-71 (75)
160 TIGR00655 PurU formyltetrahydr 95.4 0.038 8.3E-07 55.9 7.0 62 80-141 1-66 (280)
161 PRK06635 aspartate kinase; Rev 95.3 0.1 2.3E-06 54.3 9.9 120 86-214 270-398 (404)
162 PRK07334 threonine dehydratase 95.3 0.071 1.5E-06 56.0 8.7 64 79-142 326-395 (403)
163 PRK06382 threonine dehydratase 95.3 0.07 1.5E-06 56.1 8.6 66 313-379 329-399 (406)
164 TIGR01327 PGDH D-3-phosphoglyc 95.3 0.029 6.4E-07 61.0 6.0 71 79-151 451-523 (525)
165 TIGR01127 ilvA_1Cterm threonin 95.2 0.079 1.7E-06 54.8 8.7 65 78-142 304-374 (380)
166 PRK13010 purU formyltetrahydro 95.1 0.3 6.5E-06 49.8 12.2 39 75-113 5-43 (289)
167 PRK11899 prephenate dehydratas 95.1 0.15 3.2E-06 51.9 9.9 66 79-144 194-264 (279)
168 COG2716 GcvR Glycine cleavage 95.1 0.029 6.4E-07 53.6 4.5 74 313-386 91-169 (176)
169 cd04935 ACT_AKiii-DAPDC_1 ACT 95.1 0.066 1.4E-06 43.8 6.1 56 321-382 11-71 (75)
170 PRK08198 threonine dehydratase 95.0 0.12 2.6E-06 53.9 9.3 67 313-379 326-396 (404)
171 PRK06382 threonine dehydratase 95.0 0.091 2E-06 55.2 8.4 65 78-142 329-399 (406)
172 cd04891 ACT_AK-LysC-DapG-like_ 94.8 0.11 2.4E-06 38.0 6.3 53 321-376 8-60 (61)
173 cd04885 ACT_ThrD-I Tandem C-te 94.8 0.14 3E-06 40.6 7.1 59 82-141 1-61 (68)
174 cd04891 ACT_AK-LysC-DapG-like_ 94.7 0.13 2.8E-06 37.7 6.4 51 86-138 8-59 (61)
175 cd04912 ACT_AKiii-LysC-EC-like 94.7 0.13 2.9E-06 41.5 6.8 52 321-378 11-67 (75)
176 COG0317 SpoT Guanosine polypho 94.7 0.16 3.4E-06 57.7 9.6 72 77-150 625-700 (701)
177 PRK06545 prephenate dehydrogen 94.7 0.096 2.1E-06 54.1 7.5 66 79-145 290-357 (359)
178 cd04906 ACT_ThrD-I_1 First of 94.6 0.17 3.6E-06 42.0 7.5 76 315-395 2-79 (85)
179 cd04913 ACT_AKii-LysC-BS-like_ 94.5 0.089 1.9E-06 40.3 5.3 55 321-378 9-63 (75)
180 TIGR00655 PurU formyltetrahydr 94.5 0.091 2E-06 53.3 6.8 64 315-378 1-66 (280)
181 TIGR01327 PGDH D-3-phosphoglyc 94.5 0.063 1.4E-06 58.5 6.0 72 315-388 452-523 (525)
182 cd04913 ACT_AKii-LysC-BS-like_ 94.4 0.11 2.4E-06 39.8 5.7 54 86-141 9-63 (75)
183 COG2061 ACT-domain-containing 94.4 1.2 2.6E-05 42.3 13.3 137 76-215 2-153 (170)
184 cd04871 ACT_PSP_2 ACT domains 94.4 0.041 8.9E-07 46.0 3.3 63 81-144 1-74 (84)
185 COG0077 PheA Prephenate dehydr 94.4 0.22 4.7E-06 51.0 9.1 75 311-385 191-268 (279)
186 cd04935 ACT_AKiii-DAPDC_1 ACT 94.2 0.19 4.2E-06 41.1 6.9 56 86-145 11-71 (75)
187 PRK06545 prephenate dehydrogen 94.1 0.14 3E-06 52.9 7.3 64 314-380 290-355 (359)
188 PRK08198 threonine dehydratase 93.9 0.28 6E-06 51.3 9.1 65 78-142 326-396 (404)
189 TIGR00656 asp_kin_monofn aspar 93.9 0.55 1.2E-05 48.9 11.2 128 80-215 261-396 (401)
190 cd04932 ACT_AKiii-LysC-EC_1 AC 93.8 0.14 3.1E-06 42.0 5.4 56 321-382 11-71 (75)
191 cd04871 ACT_PSP_2 ACT domains 93.7 0.077 1.7E-06 44.4 3.7 64 317-380 2-73 (84)
192 PRK08818 prephenate dehydrogen 93.7 0.12 2.6E-06 54.5 5.9 51 314-365 295-346 (370)
193 TIGR01270 Trp_5_monoox tryptop 93.5 0.4 8.6E-06 52.2 9.5 79 308-386 25-105 (464)
194 PRK11898 prephenate dehydratas 93.5 0.42 9.1E-06 48.5 9.2 66 79-144 196-267 (283)
195 PRK12483 threonine dehydratase 93.4 2 4.4E-05 47.4 14.9 132 78-217 344-504 (521)
196 cd04934 ACT_AK-Hom3_1 CT domai 93.3 0.22 4.7E-06 40.7 5.7 56 321-382 11-69 (73)
197 COG0077 PheA Prephenate dehydr 93.2 0.38 8.3E-06 49.2 8.3 71 78-148 193-268 (279)
198 PRK10622 pheA bifunctional cho 93.1 0.43 9.3E-06 50.6 9.0 71 314-384 297-370 (386)
199 PRK03059 PII uridylyl-transfer 93.1 0.24 5.3E-06 57.2 7.7 68 78-145 785-856 (856)
200 PRK08818 prephenate dehydrogen 93.1 0.27 5.8E-06 51.9 7.4 51 79-129 295-347 (370)
201 cd04912 ACT_AKiii-LysC-EC-like 93.1 0.44 9.5E-06 38.5 7.1 52 86-141 11-67 (75)
202 cd04932 ACT_AKiii-LysC-EC_1 AC 93.1 0.29 6.3E-06 40.1 6.1 56 86-145 11-71 (75)
203 cd04906 ACT_ThrD-I_1 First of 93.0 0.5 1.1E-05 39.2 7.5 74 80-157 2-78 (85)
204 cd04936 ACT_AKii-LysC-BS-like_ 92.7 0.49 1.1E-05 35.3 6.5 51 321-379 10-60 (63)
205 COG2150 Predicted regulator of 92.7 0.46 9.9E-06 45.3 7.6 71 77-149 91-165 (167)
206 cd04919 ACT_AK-Hom3_2 ACT doma 92.7 0.35 7.6E-06 37.1 5.7 51 322-378 12-62 (66)
207 PRK11898 prephenate dehydratas 92.3 0.74 1.6E-05 46.7 9.1 68 314-381 196-267 (283)
208 cd04890 ACT_AK-like_1 ACT doma 92.3 0.36 7.8E-06 36.9 5.4 49 322-376 11-61 (62)
209 PRK05092 PII uridylyl-transfer 92.3 0.46 9.9E-06 55.3 8.6 66 78-144 842-915 (931)
210 COG2061 ACT-domain-containing 92.2 1.4 3.1E-05 41.9 10.1 115 312-428 3-120 (170)
211 PRK10622 pheA bifunctional cho 92.0 0.57 1.2E-05 49.6 8.2 66 79-144 297-367 (386)
212 cd04890 ACT_AK-like_1 ACT doma 91.9 0.49 1.1E-05 36.2 5.7 50 86-139 10-61 (62)
213 TIGR01268 Phe4hydrox_tetr phen 91.9 0.85 1.9E-05 49.3 9.3 65 79-143 16-84 (436)
214 cd04934 ACT_AK-Hom3_1 CT domai 91.8 0.56 1.2E-05 38.3 6.3 56 86-145 11-69 (73)
215 cd04922 ACT_AKi-HSDH-ThrA_2 AC 91.6 0.62 1.3E-05 35.4 5.9 52 321-378 11-62 (66)
216 PRK08210 aspartate kinase I; R 91.5 2.9 6.4E-05 43.8 12.8 120 80-214 272-397 (403)
217 PLN02317 arogenate dehydratase 91.4 0.95 2.1E-05 48.2 9.0 71 314-384 283-370 (382)
218 cd04933 ACT_AK1-AT_1 ACT domai 91.3 0.54 1.2E-05 39.2 5.7 52 321-378 11-70 (78)
219 TIGR01693 UTase_glnD [Protein- 91.3 0.68 1.5E-05 53.3 8.4 67 314-380 668-740 (850)
220 cd04924 ACT_AK-Arch_2 ACT doma 91.0 0.69 1.5E-05 35.0 5.7 52 322-379 12-63 (66)
221 PRK03381 PII uridylyl-transfer 90.9 0.63 1.4E-05 53.3 7.6 63 315-379 600-665 (774)
222 TIGR01268 Phe4hydrox_tetr phen 90.9 1.1 2.3E-05 48.6 8.9 67 314-380 16-84 (436)
223 PRK05007 PII uridylyl-transfer 90.8 0.78 1.7E-05 53.3 8.3 66 315-380 702-772 (884)
224 cd04916 ACT_AKiii-YclM-BS_2 AC 90.8 0.75 1.6E-05 34.9 5.7 52 321-378 11-62 (66)
225 COG3830 ACT domain-containing 90.7 0.26 5.7E-06 42.8 3.4 52 312-365 1-52 (90)
226 cd04919 ACT_AK-Hom3_2 ACT doma 90.5 0.73 1.6E-05 35.3 5.4 51 87-141 12-62 (66)
227 TIGR01270 Trp_5_monoox tryptop 90.5 1.2 2.5E-05 48.7 8.7 72 78-149 30-105 (464)
228 cd04936 ACT_AKii-LysC-BS-like_ 90.5 1.5 3.3E-05 32.6 7.0 50 86-141 10-59 (63)
229 PRK15385 magnesium transport p 90.4 2.4 5.3E-05 42.3 10.3 75 313-387 141-220 (225)
230 COG0527 LysC Aspartokinases [A 90.2 4.7 0.0001 43.8 13.1 124 80-214 311-441 (447)
231 PRK01759 glnD PII uridylyl-tra 89.8 0.92 2E-05 52.6 7.8 67 315-381 678-749 (854)
232 PLN02317 arogenate dehydratase 89.3 1.8 3.9E-05 46.2 8.9 66 79-144 283-367 (382)
233 PF13840 ACT_7: ACT domain ; P 89.3 0.84 1.8E-05 36.3 5.0 46 323-377 19-64 (65)
234 cd04922 ACT_AKi-HSDH-ThrA_2 AC 89.2 1.4 3.1E-05 33.4 6.1 51 86-140 11-61 (66)
235 cd04933 ACT_AK1-AT_1 ACT domai 89.1 1.2 2.6E-05 37.1 6.0 40 86-129 11-50 (78)
236 PLN02550 threonine dehydratase 88.8 8.3 0.00018 43.4 14.0 135 77-218 415-575 (591)
237 PRK02047 hypothetical protein; 88.8 4.6 9.9E-05 34.7 9.5 73 313-385 15-90 (91)
238 PRK00275 glnD PII uridylyl-tra 88.7 1.2 2.7E-05 51.8 7.9 66 78-143 813-885 (895)
239 COG3830 ACT domain-containing 88.7 0.47 1E-05 41.2 3.4 46 77-124 1-46 (90)
240 PF04350 PilO: Pilus assembly 88.5 1 2.2E-05 39.8 5.6 65 88-152 51-120 (144)
241 cd04914 ACT_AKi-DapG-BS_1 ACT 88.5 1.1 2.4E-05 35.7 5.2 39 321-365 9-47 (67)
242 cd04924 ACT_AK-Arch_2 ACT doma 88.4 1.6 3.4E-05 33.1 5.8 51 87-141 12-62 (66)
243 TIGR00657 asp_kinases aspartat 88.2 4.8 0.0001 42.8 11.3 115 90-215 315-437 (441)
244 PRK08639 threonine dehydratase 88.2 3.6 7.9E-05 43.7 10.4 81 313-396 335-417 (420)
245 cd04916 ACT_AKiii-YclM-BS_2 AC 87.9 1.9 4.2E-05 32.7 6.1 41 86-128 11-51 (66)
246 PRK09034 aspartate kinase; Rev 87.8 8.2 0.00018 41.6 12.8 116 88-214 320-445 (454)
247 cd04892 ACT_AK-like_2 ACT doma 87.7 1.5 3.2E-05 32.2 5.2 53 321-379 10-62 (65)
248 TIGR02079 THD1 threonine dehyd 87.5 4.5 9.7E-05 43.0 10.5 81 313-396 324-406 (409)
249 PRK15385 magnesium transport p 87.4 4.8 0.0001 40.2 9.9 73 77-149 140-219 (225)
250 cd04923 ACT_AK-LysC-DapG-like_ 87.3 2.7 5.9E-05 31.3 6.5 50 321-378 10-59 (63)
251 PRK08526 threonine dehydratase 86.6 3.1 6.8E-05 44.2 8.8 67 313-379 325-395 (403)
252 PRK04374 PII uridylyl-transfer 86.3 2.2 4.7E-05 49.8 8.0 65 315-379 691-758 (869)
253 cd04892 ACT_AK-like_2 ACT doma 86.1 2.3 5E-05 31.2 5.5 52 86-141 10-61 (65)
254 cd04911 ACT_AKiii-YclM-BS_1 AC 85.8 2.2 4.8E-05 35.9 5.7 60 320-385 10-72 (76)
255 PRK01759 glnD PII uridylyl-tra 85.6 2.2 4.8E-05 49.5 7.6 64 314-378 783-851 (854)
256 COG0788 PurU Formyltetrahydrof 85.6 1.9 4.2E-05 44.2 6.2 180 77-268 5-219 (287)
257 cd04918 ACT_AK1-AT_2 ACT domai 85.5 3 6.4E-05 32.7 6.1 50 323-378 12-61 (65)
258 PF09383 NIL: NIL domain; Int 85.5 3 6.6E-05 33.6 6.3 56 163-218 4-71 (76)
259 PF13840 ACT_7: ACT domain ; P 85.5 2.6 5.6E-05 33.5 5.8 46 88-140 19-64 (65)
260 cd04868 ACT_AK-like ACT domain 85.3 3.4 7.4E-05 29.5 6.0 47 88-138 12-58 (60)
261 PRK09084 aspartate kinase III; 84.7 18 0.00038 39.1 13.4 113 88-214 318-442 (448)
262 PRK09224 threonine dehydratase 84.6 28 0.00061 38.2 15.1 75 78-156 327-404 (504)
263 cd04923 ACT_AK-LysC-DapG-like_ 84.3 6.4 0.00014 29.2 7.2 50 86-141 10-59 (63)
264 PRK06291 aspartate kinase; Pro 84.2 8.6 0.00019 41.5 10.8 120 88-215 333-459 (465)
265 TIGR00656 asp_kin_monofn aspar 84.0 2.5 5.4E-05 44.1 6.5 106 315-430 261-374 (401)
266 cd04918 ACT_AK1-AT_2 ACT domai 83.7 3.8 8.1E-05 32.1 6.0 50 88-141 12-61 (65)
267 cd04914 ACT_AKi-DapG-BS_1 ACT 83.3 3.7 8E-05 32.7 5.8 38 86-127 9-46 (67)
268 PRK00907 hypothetical protein; 83.1 9.2 0.0002 33.2 8.5 72 313-384 16-90 (92)
269 cd04921 ACT_AKi-HSDH-ThrA-like 83.1 4.5 9.7E-05 32.2 6.3 41 321-365 11-51 (80)
270 cd04868 ACT_AK-like ACT domain 83.0 3.7 8E-05 29.4 5.3 48 323-376 12-59 (60)
271 PRK06635 aspartate kinase; Rev 82.9 3.9 8.5E-05 42.7 7.4 98 321-428 270-375 (404)
272 PRK14434 acylphosphatase; Prov 82.0 3.4 7.3E-05 35.5 5.5 45 171-215 16-64 (92)
273 PRK12483 threonine dehydratase 81.7 8.8 0.00019 42.5 9.9 103 313-422 344-463 (521)
274 TIGR01124 ilvA_2Cterm threonin 81.7 8.8 0.00019 42.1 9.8 77 313-394 324-401 (499)
275 PLN02551 aspartokinase 81.7 21 0.00046 39.5 12.8 114 88-215 378-505 (521)
276 cd04937 ACT_AKi-DapG-BS_2 ACT 81.6 5.3 0.00012 31.0 6.1 49 87-141 12-60 (64)
277 cd04915 ACT_AK-Ectoine_2 ACT d 81.5 4.9 0.00011 31.8 5.9 49 324-378 14-62 (66)
278 PRK08961 bifunctional aspartat 80.6 25 0.00055 40.9 13.5 116 86-215 332-457 (861)
279 PRK04998 hypothetical protein; 80.4 14 0.0003 31.4 8.6 72 313-384 14-86 (88)
280 PLN02550 threonine dehydratase 80.2 9.8 0.00021 42.9 9.7 104 313-422 416-533 (591)
281 cd04937 ACT_AKi-DapG-BS_2 ACT 79.7 4.3 9.3E-05 31.6 4.9 50 322-379 12-61 (64)
282 cd04911 ACT_AKiii-YclM-BS_1 AC 79.6 5.1 0.00011 33.7 5.6 60 85-148 10-72 (76)
283 PRK09977 putative Mg(2+) trans 79.5 13 0.00028 36.8 9.2 69 315-386 145-213 (215)
284 COG2844 GlnD UTP:GlnB (protein 79.2 5.1 0.00011 46.6 7.2 51 74-124 786-838 (867)
285 PRK09181 aspartate kinase; Val 78.9 28 0.00061 38.1 12.5 115 88-214 341-461 (475)
286 PF04350 PilO: Pilus assembly 78.7 6.8 0.00015 34.5 6.5 67 323-389 51-120 (144)
287 PRK08639 threonine dehydratase 78.5 14 0.00031 39.2 9.9 79 78-159 335-417 (420)
288 PRK08526 threonine dehydratase 78.4 9.7 0.00021 40.5 8.6 65 78-142 325-395 (403)
289 PRK14426 acylphosphatase; Prov 78.1 5.9 0.00013 33.8 5.7 45 171-215 18-64 (92)
290 TIGR02079 THD1 threonine dehyd 76.1 18 0.00038 38.5 9.8 79 78-159 324-406 (409)
291 PRK09466 metL bifunctional asp 75.8 39 0.00084 39.5 13.1 117 88-215 329-450 (810)
292 PRK14429 acylphosphatase; Prov 75.3 8.2 0.00018 32.8 5.8 45 171-215 16-62 (90)
293 cd04921 ACT_AKi-HSDH-ThrA-like 75.3 10 0.00022 30.1 6.0 40 86-127 11-50 (80)
294 cd04915 ACT_AK-Ectoine_2 ACT d 74.8 11 0.00023 29.9 6.0 48 89-140 14-61 (66)
295 PF02700 PurS: Phosphoribosylf 74.3 13 0.00029 31.3 6.7 55 80-139 1-65 (80)
296 PRK09224 threonine dehydratase 74.2 22 0.00048 39.0 10.2 103 313-421 327-445 (504)
297 PRK09977 putative Mg(2+) trans 73.9 22 0.00048 35.2 9.2 68 79-149 144-213 (215)
298 PRK08210 aspartate kinase I; R 73.8 8.8 0.00019 40.3 6.8 96 316-428 273-374 (403)
299 PF00708 Acylphosphatase: Acyl 73.0 7.3 0.00016 32.6 4.9 45 171-215 18-64 (91)
300 PRK00341 hypothetical protein; 73.0 26 0.00057 30.2 8.3 70 314-384 17-89 (91)
301 TIGR01124 ilvA_2Cterm threonin 72.9 21 0.00047 39.1 9.7 116 78-215 324-442 (499)
302 PRK14420 acylphosphatase; Prov 72.8 9.1 0.0002 32.4 5.4 45 171-215 16-62 (91)
303 COG0527 LysC Aspartokinases [A 72.7 14 0.00031 40.1 8.2 107 315-434 311-424 (447)
304 PF10741 T2SM_b: Type II secre 71.1 20 0.00044 31.0 7.3 63 91-153 17-84 (110)
305 PF04455 Saccharop_dh_N: LOR/S 70.9 11 0.00024 33.4 5.7 57 325-382 15-74 (103)
306 PRK14445 acylphosphatase; Prov 70.8 11 0.00024 32.1 5.5 45 171-215 18-64 (91)
307 cd04920 ACT_AKiii-DAPDC_2 ACT 70.7 15 0.00033 28.7 5.9 49 322-378 11-59 (63)
308 PF02700 PurS: Phosphoribosylf 70.6 19 0.00041 30.4 6.8 44 315-365 1-49 (80)
309 PF00585 Thr_dehydrat_C: C-ter 69.6 29 0.00062 29.6 7.8 80 312-395 8-88 (91)
310 PRK14422 acylphosphatase; Prov 69.5 12 0.00027 32.1 5.6 45 171-215 20-66 (93)
311 PRK14436 acylphosphatase; Prov 69.0 14 0.0003 31.7 5.7 45 171-215 18-64 (91)
312 PRK14428 acylphosphatase; Prov 68.8 15 0.00032 32.1 5.9 45 171-215 22-68 (97)
313 PRK14433 acylphosphatase; Prov 68.3 13 0.00029 31.5 5.4 45 171-215 15-61 (87)
314 cd04917 ACT_AKiii-LysC-EC_2 AC 67.8 20 0.00043 27.6 6.0 49 322-378 12-60 (64)
315 PF04359 DUF493: Protein of un 67.4 28 0.00061 29.0 7.2 74 312-385 8-84 (85)
316 PRK14449 acylphosphatase; Prov 67.2 16 0.00035 31.0 5.8 45 171-215 17-63 (90)
317 PLN02551 aspartokinase 67.2 10 0.00022 42.0 5.7 90 323-428 378-479 (521)
318 PRK14444 acylphosphatase; Prov 66.9 16 0.00035 31.2 5.8 45 171-215 18-64 (92)
319 PRK14427 acylphosphatase; Prov 66.5 16 0.00035 31.4 5.7 45 171-215 20-66 (94)
320 cd04910 ACT_AK-Ectoine_1 ACT d 66.3 22 0.00048 29.5 6.2 52 89-144 14-65 (71)
321 PRK09084 aspartate kinase III; 66.3 20 0.00043 38.7 7.6 92 323-430 318-421 (448)
322 PRK14423 acylphosphatase; Prov 66.3 16 0.00035 31.2 5.6 45 171-215 19-65 (92)
323 COG0788 PurU Formyltetrahydrof 65.6 14 0.0003 38.2 5.9 70 311-381 4-76 (287)
324 PRK14439 acylphosphatase; Prov 65.6 15 0.00033 35.2 5.8 47 171-217 89-137 (163)
325 PRK09181 aspartate kinase; Val 65.5 17 0.00037 39.8 7.0 94 323-430 341-438 (475)
326 PRK14430 acylphosphatase; Prov 65.1 17 0.00038 31.1 5.6 45 171-215 18-64 (92)
327 PRK00227 glnD PII uridylyl-tra 65.1 32 0.00068 39.6 9.2 67 79-146 546-620 (693)
328 PF10741 T2SM_b: Type II secre 65.0 41 0.00089 29.1 8.0 65 326-390 17-84 (110)
329 PRK14447 acylphosphatase; Prov 64.8 18 0.00039 31.1 5.7 45 171-215 18-65 (95)
330 PRK14441 acylphosphatase; Prov 64.6 18 0.00038 31.1 5.6 45 171-215 19-65 (93)
331 PRK02047 hypothetical protein; 64.5 48 0.0011 28.5 8.2 69 79-147 16-89 (91)
332 PRK14442 acylphosphatase; Prov 64.1 17 0.00037 31.1 5.4 45 171-215 18-64 (91)
333 PRK14435 acylphosphatase; Prov 63.6 18 0.00039 30.8 5.4 45 171-215 16-62 (90)
334 PRK14438 acylphosphatase; Prov 63.5 19 0.00042 30.6 5.6 45 171-215 17-63 (91)
335 PRK14432 acylphosphatase; Prov 63.3 19 0.00042 30.9 5.6 45 171-215 16-63 (93)
336 PRK14421 acylphosphatase; Prov 62.9 22 0.00047 31.2 5.9 45 171-215 18-64 (99)
337 PRK08961 bifunctional aspartat 61.7 26 0.00056 40.9 7.9 93 322-430 333-435 (861)
338 PRK14440 acylphosphatase; Prov 61.2 23 0.0005 30.2 5.6 45 171-215 17-63 (90)
339 PRK14451 acylphosphatase; Prov 60.8 22 0.00048 30.3 5.5 45 171-215 17-63 (89)
340 PRK09034 aspartate kinase; Rev 60.6 19 0.0004 38.9 6.1 58 316-379 387-447 (454)
341 PRK14446 acylphosphatase; Prov 59.5 18 0.00039 30.9 4.7 44 172-215 17-62 (88)
342 PRK08841 aspartate kinase; Val 59.5 23 0.00051 37.6 6.6 60 315-382 319-378 (392)
343 PRK10820 DNA-binding transcrip 59.1 27 0.00059 38.3 7.1 70 317-391 3-73 (520)
344 PRK14448 acylphosphatase; Prov 58.8 26 0.00056 29.9 5.5 45 171-215 16-62 (90)
345 PRK00907 hypothetical protein; 58.6 69 0.0015 27.9 8.1 68 79-146 17-89 (92)
346 PRK06291 aspartate kinase; Pro 58.6 20 0.00043 38.8 5.9 96 323-428 333-433 (465)
347 PF04455 Saccharop_dh_N: LOR/S 58.6 30 0.00064 30.8 6.0 56 90-145 15-74 (103)
348 PF01985 CRS1_YhbY: CRS1 / Yhb 58.4 60 0.0013 27.2 7.6 35 163-197 44-82 (84)
349 TIGR00657 asp_kinases aspartat 58.2 20 0.00043 38.2 5.8 51 320-378 387-437 (441)
350 PRK14450 acylphosphatase; Prov 58.2 26 0.00056 29.8 5.4 45 171-215 16-63 (91)
351 cd04907 ACT_ThrD-I_2 Second of 58.1 1.1E+02 0.0024 25.5 9.3 76 315-394 2-77 (81)
352 PRK14425 acylphosphatase; Prov 58.1 29 0.00063 29.9 5.8 45 171-215 20-66 (94)
353 cd04920 ACT_AKiii-DAPDC_2 ACT 58.0 42 0.0009 26.2 6.2 48 87-140 11-58 (63)
354 PRK14443 acylphosphatase; Prov 57.7 30 0.00066 30.0 5.8 45 171-215 18-64 (93)
355 cd04917 ACT_AKiii-LysC-EC_2 AC 57.5 43 0.00094 25.7 6.2 49 87-141 12-60 (64)
356 COG1828 PurS Phosphoribosylfor 57.4 33 0.00072 29.5 5.9 52 315-373 2-59 (83)
357 cd03709 lepA_C lepA_C: This fa 57.3 35 0.00076 28.0 5.9 55 161-215 3-61 (80)
358 PRK14637 hypothetical protein; 56.0 1.1E+02 0.0024 28.7 9.7 104 89-201 7-130 (151)
359 PRK00092 ribosome maturation p 56.0 1.1E+02 0.0024 28.4 9.6 107 91-202 8-134 (154)
360 PRK04998 hypothetical protein; 56.0 78 0.0017 26.9 8.0 68 79-146 15-85 (88)
361 PRK05925 aspartate kinase; Pro 55.8 2.3E+02 0.005 30.9 13.4 112 89-214 311-429 (440)
362 TIGR01269 Tyr_3_monoox tyrosin 55.4 54 0.0012 36.1 8.5 75 308-383 33-111 (457)
363 PF14257 DUF4349: Domain of un 55.2 2.2E+02 0.0047 28.2 12.2 73 77-149 49-124 (262)
364 COG2844 GlnD UTP:GlnB (protein 54.8 35 0.00076 40.1 7.3 39 313-351 790-828 (867)
365 PF00585 Thr_dehydrat_C: C-ter 54.7 61 0.0013 27.6 7.2 77 77-157 8-87 (91)
366 cd03710 BipA_TypA_C BipA_TypA_ 54.6 34 0.00074 27.9 5.4 55 161-215 3-60 (79)
367 COG1828 PurS Phosphoribosylfor 54.5 39 0.00084 29.1 5.8 58 80-142 2-66 (83)
368 PF01985 CRS1_YhbY: CRS1 / Yhb 54.1 64 0.0014 27.1 7.1 68 367-434 4-82 (84)
369 PRK05783 hypothetical protein; 53.9 74 0.0016 27.4 7.5 60 313-379 1-67 (84)
370 PRK09436 thrA bifunctional asp 53.7 51 0.0011 38.5 8.5 122 86-215 325-457 (819)
371 PRK14640 hypothetical protein; 53.5 76 0.0017 29.6 8.2 105 92-203 8-134 (152)
372 PRK14452 acylphosphatase; Prov 52.8 36 0.00078 30.3 5.6 45 171-215 34-80 (107)
373 cd04910 ACT_AK-Ectoine_1 ACT d 52.7 44 0.00096 27.7 5.8 44 172-215 17-62 (71)
374 PRK05783 hypothetical protein; 52.3 66 0.0014 27.7 6.9 60 78-142 1-67 (84)
375 PRK14437 acylphosphatase; Prov 51.8 35 0.00076 30.4 5.4 45 171-215 37-83 (109)
376 PRK10820 DNA-binding transcrip 51.2 37 0.00079 37.3 6.6 68 82-152 3-71 (520)
377 PF00013 KH_1: KH domain syndr 50.8 59 0.0013 24.7 5.9 41 172-213 18-60 (60)
378 PF02641 DUF190: Uncharacteriz 50.4 17 0.00038 31.4 3.2 34 182-215 52-86 (101)
379 PRK14424 acylphosphatase; Prov 49.3 44 0.00095 29.0 5.5 45 171-215 21-67 (94)
380 PRK09466 metL bifunctional asp 49.0 85 0.0018 36.8 9.3 99 323-434 329-432 (810)
381 PF08753 NikR_C: NikR C termin 48.3 1.6E+02 0.0034 24.4 9.0 69 81-149 3-73 (78)
382 PRK14431 acylphosphatase; Prov 47.8 62 0.0013 27.6 6.1 43 172-215 17-61 (89)
383 TIGR01269 Tyr_3_monoox tyrosin 45.2 88 0.0019 34.5 8.1 70 79-149 39-114 (457)
384 PRK14645 hypothetical protein; 45.0 1.2E+02 0.0026 28.6 8.1 108 86-203 5-134 (154)
385 PF09377 SBDS_C: SBDS protein 43.5 1.2E+02 0.0025 27.5 7.5 99 89-214 21-123 (125)
386 PRK00341 hypothetical protein; 43.2 1.5E+02 0.0032 25.6 7.8 67 79-146 17-88 (91)
387 PF13399 LytR_C: LytR cell env 43.2 81 0.0018 25.9 6.0 59 316-377 3-65 (90)
388 TIGR00302 phosphoribosylformyl 43.1 86 0.0019 26.1 6.1 54 81-139 2-65 (80)
389 PRK00227 glnD PII uridylyl-tra 41.1 72 0.0016 36.8 7.1 87 315-406 547-639 (693)
390 PRK08841 aspartate kinase; Val 40.4 81 0.0018 33.6 7.0 58 80-143 319-376 (392)
391 PF03462 PCRF: PCRF domain; I 40.4 78 0.0017 28.0 5.8 38 328-365 69-106 (115)
392 TIGR00302 phosphoribosylformyl 40.1 1E+02 0.0022 25.6 6.1 54 316-376 2-65 (80)
393 cd02393 PNPase_KH Polynucleoti 39.8 75 0.0016 24.9 5.1 40 172-213 20-60 (61)
394 PF03927 NapD: NapD protein; 39.6 1.5E+02 0.0032 24.8 7.0 66 79-149 3-70 (79)
395 cd04907 ACT_ThrD-I_2 Second of 39.5 2.2E+02 0.0049 23.7 9.2 73 80-157 2-77 (81)
396 PF09186 DUF1949: Domain of un 37.1 1.1E+02 0.0023 22.7 5.3 48 167-215 2-51 (56)
397 PF02576 DUF150: Uncharacteris 37.0 1.9E+02 0.0042 26.1 8.0 105 96-205 2-126 (141)
398 cd01514 Elongation_Factor_C El 36.6 88 0.0019 25.1 5.1 55 161-215 3-60 (79)
399 PRK09436 thrA bifunctional asp 35.3 56 0.0012 38.1 5.2 64 86-151 406-471 (819)
400 PF00560 LRR_1: Leucine Rich R 35.3 14 0.0003 23.5 0.2 12 9-20 3-14 (22)
401 PRK05974 phosphoribosylformylg 33.3 1.5E+02 0.0033 24.6 6.1 54 81-139 2-65 (80)
402 cd03713 EFG_mtEFG_C EFG_mtEFG_ 33.2 90 0.0019 25.0 4.7 55 161-215 3-59 (78)
403 PRK05974 phosphoribosylformylg 32.9 1.2E+02 0.0027 25.1 5.5 54 316-376 2-65 (80)
404 cd03711 Tet_C Tet_C: C-terminu 32.5 1.1E+02 0.0024 24.6 5.2 55 161-215 3-59 (78)
405 PF00107 ADH_zinc_N: Zinc-bind 32.0 77 0.0017 26.8 4.3 42 175-221 46-87 (130)
406 PRK14636 hypothetical protein; 31.8 4.7E+02 0.01 25.2 11.1 104 90-200 5-132 (176)
407 COG2102 Predicted ATPases of P 31.4 90 0.0019 31.4 5.2 118 101-218 21-174 (223)
408 PF04359 DUF493: Protein of un 31.1 2E+02 0.0043 23.9 6.5 70 79-148 10-84 (85)
409 TIGR00300 conserved hypothetic 31.0 1.1E+02 0.0023 33.4 6.0 55 325-380 15-72 (407)
410 PF13504 LRR_7: Leucine rich r 30.7 16 0.00034 22.2 -0.1 13 8-20 3-15 (17)
411 PRK05925 aspartate kinase; Pro 30.2 1.9E+02 0.0041 31.5 7.9 93 324-432 311-410 (440)
412 PRK00110 hypothetical protein; 29.8 2.7E+02 0.0059 28.2 8.4 123 80-217 97-226 (245)
413 PRK12378 hypothetical protein; 29.6 1.3E+02 0.0029 30.2 6.1 122 81-216 95-224 (235)
414 COG2921 Uncharacterized conser 29.2 3.9E+02 0.0084 23.6 8.0 72 314-385 15-89 (90)
415 cd04097 mtEFG1_C mtEFG1_C: C-t 28.6 1.3E+02 0.0028 24.2 4.9 55 161-215 3-59 (78)
416 PF03927 NapD: NapD protein; 28.2 2.7E+02 0.0058 23.2 6.8 67 315-387 4-71 (79)
417 COG1993 PII-like signaling pro 27.6 48 0.001 30.0 2.3 34 182-215 55-89 (109)
418 smart00838 EFG_C Elongation fa 27.3 1.4E+02 0.003 24.5 4.9 55 161-215 5-61 (85)
419 PF09383 NIL: NIL domain; Int 27.2 2E+02 0.0043 23.0 5.8 54 326-380 17-70 (76)
420 PRK14646 hypothetical protein; 27.0 5.3E+02 0.012 24.2 10.3 107 91-203 8-137 (155)
421 cd04098 eEF2_C_snRNP eEF2_C_sn 26.4 1.4E+02 0.0031 24.4 4.9 56 161-216 3-62 (80)
422 KOG2797 Prephenate dehydratase 26.2 1.5E+02 0.0033 31.6 6.0 36 80-115 282-317 (377)
423 TIGR00253 RNA_bind_YhbY putati 25.8 2.2E+02 0.0048 24.9 6.1 55 126-197 25-82 (95)
424 PF01709 Transcrip_reg: Transc 25.4 1.2E+02 0.0027 30.2 5.1 60 324-387 172-231 (234)
425 PRK14639 hypothetical protein; 25.3 3.6E+02 0.0079 24.9 7.7 94 98-200 5-118 (140)
426 TIGR03737 PRTRC_B PRTRC system 25.2 57 0.0012 32.8 2.6 28 13-40 65-92 (228)
427 PRK13558 bacterio-opsin activa 25.0 9.6E+02 0.021 26.5 13.8 134 80-225 450-588 (665)
428 cd04096 eEF2_snRNP_like_C eEF2 24.9 1.3E+02 0.0027 24.3 4.2 56 161-216 3-62 (80)
429 PRK14634 hypothetical protein; 24.7 5.9E+02 0.013 23.9 11.4 106 90-202 7-136 (155)
430 TIGR01394 TypA_BipA GTP-bindin 24.4 4.1E+02 0.0088 30.1 9.4 152 96-266 327-489 (594)
431 KOG2972 Uncharacterized conser 24.3 43 0.00092 34.5 1.6 65 317-387 207-271 (276)
432 KOG2219 Uncharacterized conser 23.8 92 0.002 36.1 4.1 48 2-57 795-842 (864)
433 cd08230 glucose_DH Glucose deh 23.7 4.1E+02 0.0089 26.8 8.5 26 194-219 240-265 (355)
434 KOG2797 Prephenate dehydratase 23.6 1.2E+02 0.0025 32.4 4.6 44 309-352 276-319 (377)
435 PF05496 RuvB_N: Holliday junc 23.1 37 0.00081 34.3 0.9 19 20-38 48-66 (233)
436 PF00679 EFG_C: Elongation fac 22.7 1.2E+02 0.0026 25.2 3.7 54 162-215 7-63 (89)
437 PRK14638 hypothetical protein; 22.2 6.5E+02 0.014 23.5 9.4 101 92-201 10-131 (150)
438 COG1760 SdaA L-serine deaminas 21.7 7.4 0.00016 39.8 -4.3 70 81-150 181-251 (262)
439 cd02394 vigilin_like_KH K homo 21.6 2.1E+02 0.0047 21.7 4.7 39 174-213 20-61 (62)
440 COG3283 TyrR Transcriptional r 20.8 2.9E+02 0.0063 30.5 6.9 77 317-398 3-80 (511)
441 KOG1250 Threonine/serine dehyd 20.7 98 0.0021 34.0 3.5 66 316-381 375-443 (457)
442 PRK14435 acylphosphatase; Prov 20.7 1.2E+02 0.0026 25.8 3.4 37 117-153 38-74 (90)
443 KOG3820 Aromatic amino acid hy 20.6 2.9E+02 0.0064 30.4 6.9 64 80-143 37-103 (461)
444 TIGR00300 conserved hypothetic 20.5 2.3E+02 0.005 31.0 6.1 53 90-142 15-71 (407)
445 PRK14421 acylphosphatase; Prov 20.2 1.5E+02 0.0033 25.9 4.0 39 115-153 38-76 (99)
446 COG1534 Predicted RNA-binding 20.2 4E+02 0.0087 23.7 6.5 70 365-434 3-83 (97)
447 PRK14449 acylphosphatase; Prov 20.1 1.8E+02 0.0039 24.6 4.4 37 116-152 38-74 (90)
No 1
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=6.2e-52 Score=382.70 Aligned_cols=157 Identities=52% Similarity=0.827 Sum_probs=153.2
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~ 155 (472)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||+++||++.++|+.|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 5899999999999999999999999999999999999997764 99999999999999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 012043 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (472)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~ 234 (472)
+|+|||+||||++++++|.+|++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||.+||.||..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
No 2
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=1.9e-51 Score=378.03 Aligned_cols=155 Identities=52% Similarity=0.801 Sum_probs=151.5
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||+++||++.++||.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 599999999999999999999999999999999999997764 999999999999999999999999999999999999
Q ss_pred hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 012043 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK 233 (472)
Q Consensus 157 V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~ 233 (472)
|+||||||||++++++|.+|++++++|||+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=1.2e-51 Score=385.04 Aligned_cols=167 Identities=59% Similarity=0.877 Sum_probs=159.1
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~ 155 (472)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||++.++++.++||.+||+||+||++|+++++++
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 5899999999999999999999999999999999999999975 99999999888999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 012043 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235 (472)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~~ 235 (472)
+|+||||||||++++++|.+|++++++|||||||+++++++||+||+++|||+|+++|+||||+|++|||++||.||+..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCccccccc
Q 012043 236 DTAPFWNFS 244 (472)
Q Consensus 236 ~~~~~~~~~ 244 (472)
...++.++|
T Consensus 161 ~~~~l~~~~ 169 (174)
T CHL00100 161 NTEYLRYIS 169 (174)
T ss_pred hHHHHHhhh
Confidence 665554433
No 4
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-51 Score=377.42 Aligned_cols=159 Identities=50% Similarity=0.776 Sum_probs=155.3
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
+|+|+++++++|+||+|+||+|||+||||||+||+|++||+++ +|||++.||+..+|||.|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 5899999999999999999999999999999999999999997 59999999999999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 012043 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (472)
Q Consensus 155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~ 234 (472)
++++|||+|+||++++..|.|+.+++++|||+|||++++++++|+||+++|+++||+.|+||||+|++|||.+||.||++
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 012043 235 G 235 (472)
Q Consensus 235 ~ 235 (472)
.
T Consensus 162 ~ 162 (163)
T COG0440 162 K 162 (163)
T ss_pred C
Confidence 4
No 5
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-52 Score=402.00 Aligned_cols=236 Identities=51% Similarity=0.734 Sum_probs=220.2
Q ss_pred cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
..+.++|+|+++|.|+||||+||+|+|++||||||||.||.||++.. ||||+.|+|..++|.++||+||++|++|.|+
T Consensus 72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy 151 (309)
T KOG2663|consen 72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY 151 (309)
T ss_pred cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence 46789999999999999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred CCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 012043 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (472)
Q Consensus 152 t~~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~R 231 (472)
+.+++|+|||||+||+ +...+.|+| ||..++++++|+|||++ ++...|++|+|-|++|||. |+.|
T Consensus 152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr 216 (309)
T KOG2663|consen 152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR 216 (309)
T ss_pred CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence 9999999999999998 899999999 99999999999999999 7889999999999999999 8999
Q ss_pred CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCC
Q 012043 232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG 311 (472)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (472)
.+++..+++|+|+++.||++.+..+...+.+.. +.+|||||++++.++ +| +++++.+|
T Consensus 217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp---------~g-vle~~rSG 274 (309)
T KOG2663|consen 217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDP---------KG-VLEEDRSG 274 (309)
T ss_pred HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCc---------cc-chhhcccc
Confidence 999999999999999999999888877755432 678999999997443 22 66889999
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g 364 (472)
++.||++.+++|-| ++++|+.|.+++||||.+.+|
T Consensus 275 l~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg 309 (309)
T KOG2663|consen 275 LRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG 309 (309)
T ss_pred hhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence 99999999999999 999999999999999988765
No 6
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=2.7e-48 Score=358.52 Aligned_cols=147 Identities=49% Similarity=0.778 Sum_probs=144.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCch
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++++|||+++++|++.++|++|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCCC
Q 012043 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESG 459 (472)
Q Consensus 393 ~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~~ 459 (472)
+|+|||+||||++++++|.+|++++++|||+|||++++++++| ++|+||||+|++|||++||.||++
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999974
No 7
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=9.6e-49 Score=365.46 Aligned_cols=157 Identities=54% Similarity=0.894 Sum_probs=153.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCch
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
|+|+|+++++|+||+|+||+++|+||||||+||++++++++++|||||+++++++.++||.+||+||+||++|.++++.+
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCCCc
Q 012043 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESGV 460 (472)
Q Consensus 393 ~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~~~ 460 (472)
+|+|||+||||++++++|.+|++++++|||||||++++++++| ++|+||||+|++|||++||.|++..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 9999999999999999999999999999999999999999999 9999999999999999999999988
Q ss_pred cccccccCC
Q 012043 461 DSTYLRGYP 469 (472)
Q Consensus 461 ~~~~l~~~~ 469 (472)
...||..||
T Consensus 161 ~~~~l~~~~ 169 (174)
T CHL00100 161 NTEYLRYIS 169 (174)
T ss_pred hHHHHHhhh
Confidence 888998876
No 8
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-48 Score=358.22 Aligned_cols=148 Identities=51% Similarity=0.804 Sum_probs=145.5
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
+|+|+||++|+|+||||+|++|||+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.|++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCCC
Q 012043 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRESG 459 (472)
Q Consensus 392 ~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~~ 459 (472)
++++|||+|+||++++..|.|+.+++++|||+|+|++++++++| ++|+||||+|++|||.+||.||++
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999999999999999999999999999999999 999999999999999999999975
No 9
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=9.9e-48 Score=353.45 Aligned_cols=145 Identities=47% Similarity=0.774 Sum_probs=142.6
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchH
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF 393 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~ 393 (472)
+|+|+++++|+||+|+||+++|+||||||+||++++++++++||||+++++|++.++||.|||+||+||++|.|++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCC
Q 012043 394 AERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRES 458 (472)
Q Consensus 394 V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~ 458 (472)
|+||||||||++++++|.+|++++++|||+|||++++++++| ++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 999999999999999999999999999999999999999999 99999999999999999999973
No 10
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=100.00 E-value=1e-32 Score=235.95 Aligned_cols=90 Identities=23% Similarity=0.377 Sum_probs=85.6
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 309 ~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
+..+.+|+||++|+|+||||+||+|||+||||||+||+||+||+|++|||||++. +++.++||+|||+||+||++|.++
T Consensus 3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEEC
Confidence 4456789999999999999999999999999999999999999999999999999 568999999999999999999999
Q ss_pred CCchHHHHhhh
Q 012043 389 THLPFAERELI 399 (472)
Q Consensus 389 t~~~~V~REL~ 399 (472)
++++.|++|+.
T Consensus 82 ~~~~~v~~e~~ 92 (96)
T PRK08178 82 QSDPTMFNKIA 92 (96)
T ss_pred CCchhHHHHHH
Confidence 99999999985
No 11
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=99.98 E-value=9.2e-34 Score=276.27 Aligned_cols=136 Identities=40% Similarity=0.613 Sum_probs=129.7
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCC
Q 012043 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
..++|+|+++|.|+|||||||+|+|+|||||||||.||-+|++.+||||||+.|+|+.++|.++||+||++|++|.|+|.
T Consensus 74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~ 153 (309)
T KOG2663|consen 74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTN 153 (309)
T ss_pred cccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh---------HhhccCCcEEEeecceeeeecCC
Q 012043 391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE---------RLLEPYGICEVARTGRVALVRES 458 (472)
Q Consensus 391 ~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE---------~lL~pyGI~EvaRTG~vAl~Rg~ 458 (472)
+++|+|||||+||+ +-..+.||| ||...+++|+| .-|+.++|-|.+|||. |+-|..
T Consensus 154 e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsgal~tnlkkkq~~e~v~tak-allrlk 218 (309)
T KOG2663|consen 154 EPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSGALVTNLKKKQIHEIVRTAK-ALLRLK 218 (309)
T ss_pred ChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCchHHHhhHHHhccchhhccHH-HHHHHh
Confidence 99999999999998 678999999 99999999999 6688999999999999 666653
No 12
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.98 E-value=1.7e-32 Score=229.51 Aligned_cols=80 Identities=28% Similarity=0.395 Sum_probs=76.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEE--ecC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ--DIT 389 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~--dlt 389 (472)
|+|+||++|+|+||||+||+|+|+||||||+||+||+||+|++||||||++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 589999999999999999999999999999999999999999999999998 99999999999999999999999 777
Q ss_pred Cch
Q 012043 390 HLP 392 (472)
Q Consensus 390 ~~~ 392 (472)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 653
No 13
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.97 E-value=9.1e-31 Score=215.59 Aligned_cols=76 Identities=34% Similarity=0.568 Sum_probs=74.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
|+|+|+++|+|+||||+||+|+|+||||||+||+||+||++++|||||++.||++.++||+|||+||+||++|.|+
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999985
No 14
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.96 E-value=3.6e-29 Score=214.13 Aligned_cols=85 Identities=24% Similarity=0.448 Sum_probs=80.9
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
+.+|+||++|+|+||||+||+|||+||||||+||+||+|++++ +|||++. +++.++||+|||+||+||++|.+++++
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~~ 84 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQSD 84 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCCc
Confidence 5689999999999999999999999999999999999999997 5999998 568999999999999999999999999
Q ss_pred hhhhhhee
Q 012043 155 PHVERELM 162 (472)
Q Consensus 155 ~~V~RELa 162 (472)
+.|++|+.
T Consensus 85 ~~v~~e~~ 92 (96)
T PRK08178 85 PTMFNKIA 92 (96)
T ss_pred hhHHHHHH
Confidence 99999974
No 15
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.96 E-value=3.9e-29 Score=209.33 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=74.0
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhhHHHHHHHHhcCceeeEEE--ecC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS 152 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~--dlt 152 (472)
|+|+||++|+|+||||+||+|+|+||||||+||+||+||+|+ +|||+++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 589999999999999999999999999999999999999998 4999998 99999999999999999999999 777
Q ss_pred Cch
Q 012043 153 NEP 155 (472)
Q Consensus 153 ~~~ 155 (472)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 653
No 16
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.96 E-value=9.7e-29 Score=203.48 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=72.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d 387 (472)
||+|+|+++|+|+||||+||+|||+||||||+||+||+|+++++||||+++. +++.++||.|||+||+||++|..
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 6899999999999999999999999999999999999999999999999995 89999999999999999999974
No 17
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.95 E-value=9.5e-28 Score=197.73 Aligned_cols=74 Identities=34% Similarity=0.558 Sum_probs=71.4
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
|+|+|+++|+|+||||+||+|+|+||||||+||++|+||+++ +|||++.||++.++||.|||+||+||++|.++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 589999999999999999999999999999999999999998 49999999999999999999999999999985
No 18
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.93 E-value=5.4e-26 Score=187.22 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=69.3
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
||+|+|+++|+|+||||+||+|+|+||||||+||++|+|++++. |||++ ++++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence 68999999999999999999999999999999999999999974 99999 589999999999999999999974
No 19
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.92 E-value=1.2e-25 Score=183.95 Aligned_cols=75 Identities=47% Similarity=0.753 Sum_probs=70.8
Q ss_pred hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 012043 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (472)
Q Consensus 158 ~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg 232 (472)
+||||||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 699999999998899999999999999999999999999999999999999999999999999999999999997
No 20
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.89 E-value=3.5e-23 Score=164.03 Aligned_cols=63 Identities=59% Similarity=0.920 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V 385 (472)
|+||+|+||+++|+||||||+||+|+++++++++||||++.|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999999999999999999999999999999999987
No 21
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.83 E-value=7.8e-21 Score=150.63 Aligned_cols=61 Identities=56% Similarity=0.950 Sum_probs=56.3
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV 148 (472)
|+||+|+||+++|+||||||+||+++++++++. |||+++|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999985 9999999999999999999999999987
No 22
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.77 E-value=1.5e-19 Score=147.97 Aligned_cols=63 Identities=56% Similarity=0.897 Sum_probs=59.4
Q ss_pred HHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecC
Q 012043 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRE 457 (472)
Q Consensus 395 ~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg 457 (472)
+|||+||||+++.++|.+|+++++.|+|+|||++++++++| ++|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 58999999999889999999999999999999999999999 9999999999999999999997
No 23
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=98.94 E-value=2.8e-09 Score=89.26 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=73.1
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
||.|.+.+.+..+||.|.||.++-++|||-+.+++..+..+.+.-.|.++|++| +.++-|..||+||.||..|+..-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-RSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-CChHHHHHHHHHHccceeEEEee
Confidence 789999999999999999999999999999999999999999999999999986 89999999999999999997543
No 24
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=98.93 E-value=3e-09 Score=89.12 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=69.1
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
||+|.+.+.+..+||.|.||.++-++|||-+.+++.....|.+. +.++|++ ++.++-|..||+||.||..|+-.-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence 78999999999999999999999999999999999999888876 8889986 668999999999999999998543
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.88 E-value=8.7e-09 Score=78.53 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=59.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID 381 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLid 381 (472)
|+|.+.+.|+||+|.+|+++|+++|+||.++......+. ...+.++...++...+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 789999999999999999999999999999999999886 666666666788899999999998764
No 26
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.81 E-value=4.2e-08 Score=74.80 Aligned_cols=71 Identities=55% Similarity=0.918 Sum_probs=63.5
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V 385 (472)
|+|.+.+.|+||+|.+++.+|+..|+||+++...+....+..++.+.+......+++++++|+++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 79999999999999999999999999999999876535688888888875438899999999999999987
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.75 E-value=4.1e-08 Score=74.82 Aligned_cols=65 Identities=28% Similarity=0.460 Sum_probs=56.2
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhhHHHHHHHHhcCce
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVN 144 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gdd~~ieQI~kQL~KLvd 144 (472)
|+|.+.+.|+||+|.+|+.+|+++|+||.++......+. ..+.++...+....+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 789999999999999999999999999999999998874 34555556678889999999988753
No 28
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.63 E-value=8.6e-08 Score=100.69 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=67.3
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
..+|.|++.++|+||||++|+++|+++|+||+|+...+++. +.++++++++ .++..++++++||+||.+|.+.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 45799999999999999999999999999999999987755 8899999999 7889999999999999998764
No 29
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.62 E-value=4.8e-07 Score=73.13 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=63.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEE
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~ 386 (472)
..+|.|...|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .|-+.+++++++|+++-+|.+|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 56899999999999999999999999999999999986678888888877 67889999999999999999986
No 30
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.62 E-value=1.7e-07 Score=71.01 Aligned_cols=71 Identities=25% Similarity=0.417 Sum_probs=63.1
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
+|.+.+.|+||+|++|+.+|+.+|+||.++.+.+.+..+...+++.++.. ..++++++|+++-+|.+|..+
T Consensus 1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 36789999999999999999999999999999877656899999998653 588999999999999999764
No 31
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.61 E-value=3.2e-07 Score=69.90 Aligned_cols=69 Identities=59% Similarity=0.947 Sum_probs=58.2
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV 148 (472)
|+|.+.+.|+||+|.+++.+|+..|+||.++........+ .+.+.+......+++++++|.++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 7899999999999999999999999999999987642233 36666653337899999999999999987
No 32
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.55 E-value=3.2e-07 Score=71.13 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=62.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
|.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++.+++. .+...+++++++|+++-+|.++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 5789999999999999999999999999999887655558888888776 5778899999999999888765
No 33
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.50 E-value=5.4e-07 Score=68.65 Aligned_cols=71 Identities=24% Similarity=0.336 Sum_probs=62.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.+.+++. .+++++++|+++-.|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 57899999999999999999999999999998775557888888888865 788999999999999998753
No 34
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.49 E-value=6.9e-07 Score=70.11 Aligned_cols=46 Identities=30% Similarity=0.543 Sum_probs=39.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEE
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITT 360 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTI 360 (472)
+.|++.++|+||+|++|+.+|+++|+||+|+.+.+.+++.+.|+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence 4688999999999999999999999999999998887765555533
No 35
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.46 E-value=9.6e-07 Score=69.29 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=40.4
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV 125 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV 125 (472)
+.|++.++|+||+|++|+.+|+++|+||+++.+.++++++.+.+.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence 4688999999999999999999999999999998887765566656
No 36
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.43 E-value=8.5e-07 Score=67.21 Aligned_cols=68 Identities=26% Similarity=0.467 Sum_probs=58.0
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
|.+.+.|+||+|++|+.+|+.+|+||.++.+...+. ...+++.++.. .+++++++|.++-+|.+|..+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 678999999999999999999999999999987652 33477777543 588999999999999999764
No 37
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.42 E-value=6.2e-07 Score=94.30 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=65.7
Q ss_pred cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhhHHHHHHHHhcCceeeEE
Q 012043 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV 148 (472)
.+...+|.|++.++|+||||++|+++|+++|+||+|+...++++. ..++|+++ .++..++++++||+||.+|.+.
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 445678999999999999999999999999999999998876542 35888887 7899999999999999998764
No 38
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.41 E-value=2.5e-06 Score=68.90 Aligned_cols=71 Identities=27% Similarity=0.401 Sum_probs=57.6
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
-.-+|.|.+.|+||+|+.|+.+++..|.||.++++....+.+ . +++.| .|-+.+++++++|+++-+|.+|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-KDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-SSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-CCHHHHHHHHHHHHCCCCeeEEE
Confidence 356899999999999999999999999999999999875333 3 44445 46789999999999999999986
No 39
>PRK08577 hypothetical protein; Provisional
Probab=98.37 E-value=3.7e-06 Score=75.42 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=66.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEEEec
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V~dl 388 (472)
..+.|.+.+.|+||+|+.|+.+|+..|+||.++++......+..++++++.- .+..++++.++|+++-+|..|...
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 3689999999999999999999999999999999987766788888877763 236899999999999999999754
No 40
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=5.2e-06 Score=63.58 Aligned_cols=70 Identities=34% Similarity=0.424 Sum_probs=61.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d 387 (472)
.|.+.+.|+||+|++++.+|+..++||.++...+. ..+..++++.+++. +.++.+.++|++.-+|..|+-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 47788999999999999999999999999987654 36788899999876 788999999999999998864
No 41
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=2.8e-06 Score=65.81 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=58.0
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhhHHHHHHHHhcCceeeEEE
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
|.|.+.+.|+||+|++++.+|++.|.||+++...+..+.+ .+.+++. .+...+++++++|.++-+|.++.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 5789999999999999999999999999999876554323 4666554 57788999999999998887653
No 42
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=2.7e-06 Score=64.82 Aligned_cols=69 Identities=30% Similarity=0.425 Sum_probs=57.9
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
+|.+.+.|+||+|.+++.+|+..|+||.++.+.+.. +.+.+.|.+++. .+++++++|.++-.|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 578999999999999999999999999999987643 233466777654 788999999999999998753
No 43
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=7.8e-06 Score=64.48 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=60.0
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChH-HHHHHHHHHhcccceEEEEec
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE-SIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~-~ieQIvkQL~KLidVi~V~dl 388 (472)
.|.+...|+||+|++|+..+++.|.||.+++... ...+..++.+.+. .+.+ .+++++++|+++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5889999999999999999999999999998743 2246767777765 3444 899999999999999999754
No 44
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.27 E-value=1.4e-06 Score=67.56 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=56.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
|.+..+|+||+|++|+.++++.|+||.+++...+...+.+.+.++.. .+++++++|.++-+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876654444566666654 888999999999999999754
No 45
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.23 E-value=2.5e-06 Score=66.10 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=56.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
|-+..+|+||+|++|+.++++.|+||.+++...+. +...+.+.++.. .+++++++|+++-+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876543 566666666644 888999999999999999754
No 46
>PRK08577 hypothetical protein; Provisional
Probab=98.22 E-value=9.6e-06 Score=72.77 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=62.3
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEE--eCChhhHHHHHHHHhcCceeeEEEec
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV--~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
.-..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+ .+++++ +..+..+++++++|.++-+|..|...
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 34578999999999999999999999999999999987654333 345444 44346799999999999999999853
No 47
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.21 E-value=4.6e-06 Score=65.01 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=61.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
+-+.+.|+||+|++|+.+|+++|.||.++.+.+.+..+.+.+.+-++++ ....+.+.|.++-+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 4568999999999999999999999999998887677888888888874 3468889999999999988763
No 48
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.18 E-value=5.6e-05 Score=72.39 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=49.9
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHH
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL 139 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL 139 (472)
.+++..|+++=.|+||+.++|+.+++..|.||...+...-...--+.+.+++....+.++...|
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L 68 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTL 68 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHH
Confidence 3467899999999999999999999999999998887766554335555677666665555555
No 49
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=1.5e-05 Score=61.01 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=58.2
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
.|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. ..++.+.++|++.-+|..|.-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 477899999999999999999999999999876543 233477788876 688899999999999998864
No 50
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=1.4e-05 Score=62.98 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=56.9
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
.|.+.+.|+||+|++|+..+++.|.||+.++..... .... +++.+.+-+..+++++++|.++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 588999999999999999999999999999874322 1122 4454554445999999999999999999754
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=1.7e-05 Score=62.58 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=60.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~ 384 (472)
+|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+.+. .+.+.++++++.|+++-+|.-
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~ 69 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV 69 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence 47899999999999999999999999999998654 368888888887 578899999999999999865
No 52
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.12 E-value=3.1e-05 Score=56.66 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=59.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEE
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~ 386 (472)
|.+.+.|+||.+++++.+|+..++||.++...... .+...+.+.+. .+...++.+.++|.++..|.+|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 56777777766 46778999999999999998875
No 53
>PRK00194 hypothetical protein; Validated
Probab=98.06 E-value=6.7e-06 Score=68.00 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=56.9
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHHhcCceeeEEE
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL~KLvdVikV~ 149 (472)
|+++++++.-.|+||++++|+++|+.+|.||..+......+.-.++++++.+. ..++.+.+.|+++-+...++
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 56899999999999999999999999999999998775322223556666543 34688888888877776655
No 54
>PRK00194 hypothetical protein; Validated
Probab=98.06 E-value=6.6e-06 Score=68.00 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=56.2
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhcccceEEEE
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd--e~~ieQIvkQL~KLidVi~V~ 386 (472)
|++|++++.-.|+||++++|+++|+.+|.||..+..... .+.--+.++++.. ...++.+.+.|+++-+...+.
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 568999999999999999999999999999999987764 3444454455533 234678888887777665554
No 55
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=98.06 E-value=3.7e-05 Score=61.72 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=60.1
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
.|.|...|++|+|+.|+.+++..|+||.++.+... +.-++++.+. +-..+++++++|+++-.|.+|+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999999653 4455666665 5678999999999999999998654
No 56
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.04 E-value=1.5e-05 Score=62.07 Aligned_cols=69 Identities=23% Similarity=0.437 Sum_probs=55.6
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
+-+...|+||+|++|+.+|+++|.||.++.+.+....+ .+.+.++++ ....+.+.|.++-+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 45688999999999999999999999999987764333 366667663 3458889999999999887653
No 57
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.03 E-value=1.4e-05 Score=60.38 Aligned_cols=46 Identities=22% Similarity=0.516 Sum_probs=39.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG 127 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g 127 (472)
|++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+++.+.++.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46899999999999999999999999999999887 44557777764
No 58
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=2.6e-05 Score=61.02 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=51.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
.+++.+.|+||.|.+++.+|+++|+||+++...+...++...+.+-+++++. +++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHH
Confidence 5788999999999999999999999999999888767888999999886443 466666665
No 59
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.00 E-value=1.7e-05 Score=59.94 Aligned_cols=47 Identities=26% Similarity=0.512 Sum_probs=39.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g 364 (472)
|++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+...+-+.++.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 46899999999999999999999999999999987 455555555553
No 60
>PRK04435 hypothetical protein; Provisional
Probab=97.98 E-value=4.8e-05 Score=69.82 Aligned_cols=74 Identities=31% Similarity=0.411 Sum_probs=59.6
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEE--eCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV--~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
.-+|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+++++ .+.+..+++|+.+|+++-.|.+|+-+.
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4589999999999999999999999999999987533222 2355554 444458999999999999999998654
No 61
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.96 E-value=4.5e-05 Score=52.84 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=50.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL 376 (472)
|++...|+||++.++++.|+++|+||.++........+..++++.++..+ .++.++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46788999999999999999999999999998776677888999888654 777777765
No 62
>PRK04435 hypothetical protein; Provisional
Probab=97.96 E-value=9.1e-05 Score=68.00 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=64.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEEecC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
+.-+|.+.+.|+||+|++|..++++.|.||.+++.... ..+...++++++ ..+..+++|+.+|+++-.|.+|+-+.
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 56899999999999999999999999999999987432 246777777776 33348999999999999999998664
No 63
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.95 E-value=5.6e-05 Score=60.69 Aligned_cols=70 Identities=9% Similarity=0.268 Sum_probs=58.4
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
.|.|...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +-..+++++++|.++-.|.+|+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999998653 2212555554 5667999999999999999998654
No 64
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.95 E-value=2.6e-05 Score=70.48 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=81.5
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
|+-.+||+++||+||-|..++..++..|+||..++.+.|.+.|++.++|+..+.. .++.+. ..+
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~Lee---------------~gF 64 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSVLEE---------------AGF 64 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHHHHH---------------CCc
Confidence 4557899999999999999999999999999999999999999999999865543 333222 223
Q ss_pred hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccCCcE
Q 012043 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG--------DPGKMVAVQRNLSKFGIK 219 (472)
Q Consensus 157 V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG--------~~~KIdafi~~L~~fGIl 219 (472)
+-|+--.+-|..+. .-..+-.|++.++.. |++-+++--=++- ..+.+|..++.|+.-||.
T Consensus 65 ~Vr~~dVlaVEmeD-~PG~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~ 132 (142)
T COG4747 65 TVRETDVLAVEMED-VPGGLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK 132 (142)
T ss_pred EEEeeeEEEEEecC-CCCcHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence 33333333444431 111334444554432 2233332221111 346789999999999975
No 65
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.90 E-value=8.1e-05 Score=59.54 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=56.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceE
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLH 383 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi 383 (472)
+.+.++|+||.|.+|...|+++|.||.+|.--|... ++-.++.|-+.| ++..++++++.|++..+-+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~ 71 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV 71 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence 567789999999999999999999999997777765 666677777888 5788999999999865533
No 66
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=5.2e-05 Score=57.81 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=52.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPGT-DESIGKLVQLLHKL 379 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~gd-e~~ieQIvkQL~KL 379 (472)
|.+.+.|+||.|.+|+.+++..|.||.++...+.. ..+...+.+.+... .+.++++.+.|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999987754 36778888887754 47789999998774
No 67
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=8.4e-05 Score=58.57 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=55.0
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeE
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK 147 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVik 147 (472)
+|.+.+.|+||.|++|+..++..|.||.++...... .+. +.+++. .+...++++++.|+++-+|.-
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~ 69 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKV 69 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence 478999999999999999999999999999987643 343 555554 467789999999999999765
No 68
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.87 E-value=0.00013 Score=59.35 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=53.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID 381 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd--e~~ieQIvkQL~KLid 381 (472)
.+|.+.+.|+||.|.+|..+|+++|+||.||..-|..+ .....+-+-+++. +..++++.++|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 46788889999999999999999999999999888754 4444444445564 6788999999998544
No 69
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.87 E-value=4.8e-05 Score=61.06 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=50.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeCCh-HHHHHHHHHHhccc
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPGTD-ESIGKLVQLLHKLI 380 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te----~~~iSRiTIVv~gde-~~ieQIvkQL~KLi 380 (472)
|++...|+||.+++|+.+|+++|.||.++.....+ ..+...|++.+...+ ..+.++.+.|+++-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999996655 336677777776543 35777777776553
No 70
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.86 E-value=0.00011 Score=53.63 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=55.6
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEE
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
|.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.+.++|.++..|.+|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 2233555554 45678999999999999998875
No 71
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=7.1e-05 Score=58.48 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=48.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
|.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.++++.+ ...+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence 689999999999999999999999999999987775322233456667643 366677776654
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=8.4e-05 Score=58.06 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=48.9
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
|.+++.+.|+||.|.+++++|+..|+||.++...... ..+.+.++++.++ ..+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence 6899999999999999999999999999999877653 2456777787543 56677776654
No 73
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00012 Score=58.08 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=50.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH 383 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi 383 (472)
+++.+.|+||.|.+++.++++.|.||.|+...+.. +.+...+.+.+. .++..++.|.+.|++-.+|.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~~ 70 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTVV 70 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccEE
Confidence 68899999999999999999999999999887752 334444444443 23345888888888765443
No 74
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.80 E-value=0.00015 Score=58.86 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=51.8
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEE--EEEEeCC--hhhHHHHHHHHhcCce
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALF--TIVVSGT--ERVLRQVVEQLNKLVN 144 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~i--TIVV~gd--d~~ieQI~kQL~KLvd 144 (472)
..|.+.+.|+||.|.+|..+|+++|+||.|+..-+..+. ..+ -+-++|. +..++++.++|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 367888899999999999999999999999998887653 333 4445664 6778888899887544
No 75
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.79 E-value=0.00011 Score=57.38 Aligned_cols=59 Identities=31% Similarity=0.454 Sum_probs=46.5
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~K 141 (472)
.+++.+.|+||.|.+++.+|+++|+||+++........+ .+.|.+++++ .+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence 578999999999999999999999999999887764444 3677776544 2466666654
No 76
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.76 E-value=4.1e-05 Score=63.38 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=55.3
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhcCceeeEEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~KLvdVikV~ 149 (472)
++.+++...|+||++++|++.|+++|.||..+..... .+. ++++++... ..++++.+.|++|-+-..++
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 5789999999999999999999999999999987753 333 666776553 45889998888877655544
No 77
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.74 E-value=0.0001 Score=59.15 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=48.2
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC----CcE--EEEEEeCCh-hhHHHHHHHHhcCc
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKLV 143 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted----~~~--iTIVV~gdd-~~ieQI~kQL~KLv 143 (472)
|++...|+||.+++|+.+|+++|.||.++.....+. .++ |++.++..+ ..+.++.+.|+++-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999865542 244 566666543 35778887776543
No 78
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.74 E-value=0.00019 Score=57.36 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=52.4
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeC--ChhhHHHHHHHHhcCcee
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVNV 145 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~g--dd~~ieQI~kQL~KLvdV 145 (472)
+.+.++|+||.|++|...|+++|.||.+|.--|... ++. +-|-+.| ++..++++.+.|.+..+-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~ 70 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED 70 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence 567789999999999999999999999997777665 333 5666777 578899999999886553
No 79
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.73 E-value=4.7e-05 Score=63.03 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=55.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcccceEEE
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~KLidVi~V 385 (472)
++.+++...|+||++++|+++|+++|.||..+..... .+.-.|.+++.... ..++++.+.|++|-+-..+
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l 72 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV 72 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999988763 44555666666443 4588888888877755443
No 80
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.00013 Score=55.65 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=42.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g 364 (472)
|.+.+.|+||.|.+++++|+..|+||.++...+....+..++.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 688999999999999999999999999998876655677788877775
No 81
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00024 Score=56.40 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=47.4
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeec--CC-CcE--EEEEEeCChhhHHHHHHHHhcCcee
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VD-KAL--FTIVVSGTERVLRQVVEQLNKLVNV 145 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed-~~~--iTIVV~gdd~~ieQI~kQL~KLvdV 145 (472)
+++.+.|+||.|++++.++++.|.||.|+..... +. ... +++.+..++ .++.|.+.|.+-.+|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS-KENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch-HHHHHHHHHhCcccE
Confidence 6889999999999999999999999999987765 22 223 344443333 478888888776444
No 82
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00026 Score=53.93 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=47.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC---CcE--EEEEEeC-ChhhHHHHHHHHhcC
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KAL--FTIVVSG-TERVLRQVVEQLNKL 142 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~~--iTIVV~g-dd~~ieQI~kQL~KL 142 (472)
|.+.+.|+||.|++|+.+++..|.||.++...+... .+. +.+.+.. +...++++++.|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 457889999999999999999999999999876532 332 5555543 346788999988764
No 83
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.00025 Score=56.70 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=49.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhccc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLI 380 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~KLi 380 (472)
+|++...|+||++++|++.|+.+|.||..+........+.-.|.+.+..+. ..++++.+.|+++-
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999877534445555555555553 25788887777653
No 84
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00063 Score=54.55 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=49.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHK 378 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~K 378 (472)
..+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-+-..-.+.+. +++..+++.+.|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999988865555554444442 34556667777654
No 85
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.52 E-value=0.00049 Score=55.91 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=52.8
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL 142 (472)
...|+++=.|+||++++|++.+++.|.||..+......+.-.+.+.+++++..++++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 4689999999999999999999999999999998877654346777888888999999999876
No 86
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.50 E-value=0.00065 Score=76.38 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=73.9
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 012043 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (472)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQI 372 (472)
.++++.+|+. +....-.-.|.|.+.|++|+|+.|+.+++.-+.||.+++.. +.+.+...|.+.+. .|-+.+++|
T Consensus 610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i 684 (702)
T PRK11092 610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANI 684 (702)
T ss_pred ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHH
Confidence 4688999972 21222356999999999999999999999999999999975 44457777777766 577899999
Q ss_pred HHHHhcccceEEEEec
Q 012043 373 VQLLHKLIDLHEVQDI 388 (472)
Q Consensus 373 vkQL~KLidVi~V~dl 388 (472)
+.+|+++-+|.+|...
T Consensus 685 ~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 685 MRKIRVMPDVIKVTRN 700 (702)
T ss_pred HHHHhCCCCcceEEEc
Confidence 9999999999999764
No 87
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00031 Score=56.15 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=48.4
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhcCc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLV 143 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~KLv 143 (472)
+|++...|+||++++|++.|+.+|+||..+........+. +.+.++.+. ..++++.+.|+++-
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999998775334444 555555553 25888888776653
No 88
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.47 E-value=0.0006 Score=47.10 Aligned_cols=57 Identities=30% Similarity=0.425 Sum_probs=45.5
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHH
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL 139 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL 139 (472)
|++...|+||.+.++++.|+++|+||.++........+ .+++.++..+ .+++++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46888999999999999999999999999987765343 3677776544 677777665
No 89
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.00043 Score=52.67 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=37.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG 127 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g 127 (472)
|.+.+.|+||.|++++++|++.|+||.++...+....+ .+.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 68899999999999999999999999999876654333 36666664
No 90
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.47 E-value=0.00074 Score=51.85 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.3
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd 129 (472)
.|.|.+.|+||+|++++++|+..|.||.++.+...++....++.+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 5789999999999999999999999999999887765334566665443
No 91
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.42 E-value=0.0011 Score=50.85 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=44.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh------HHHHHHHHHH
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD------ESIGKLVQLL 376 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde------~~ieQIvkQL 376 (472)
.|.+.+.|+||+|.+++++|+..|.||.++.+...++ ....++.+.+.+ +..+++.+-|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~l 66 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEEAL 66 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999877654 555566665433 4444444444
No 92
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.0004 Score=55.99 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=48.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-hHHHHHHHHhcCce
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLVN 144 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~-~ieQI~kQL~KLvd 144 (472)
+++.-.|+||.+++|+..|+.+|.||..+........=.+.+.++..+. .++++.+.|+++-+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999975544322125566665543 68888888877653
No 93
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.00042 Score=55.87 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=50.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-HHHHHHHHHhccc
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-SIGKLVQLLHKLI 380 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~-~ieQIvkQL~KLi 380 (472)
+++.-.|+||.+++|+++|+.+|.||..+...... +.-.|.+.+...+. .++++.+.|+++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68889999999999999999999999999755443 55667777776544 6788888887765
No 94
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.00097 Score=53.98 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=48.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-------ChHHHHHHHHHHhccc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-------TDESIGKLVQLLHKLI 380 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-------de~~ieQIvkQL~KLi 380 (472)
+|++...|+||+|++|++.|++.|.||.+-.+... +..+.-+-.|.+. +++..+++.+.|.+.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999988855 4334433344432 3456788888887643
No 95
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.0015 Score=50.78 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=45.4
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC------ChhhHHHHHHHHhc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK 141 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g------dd~~ieQI~kQL~K 141 (472)
.|.|.+.|+||+|++|+++|+..|+||.++.+....+....++.+.+ +++..++|.+.|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 47899999999999999999999999999998765543334555432 23455666666654
No 96
>PRK07431 aspartate kinase; Provisional
Probab=97.32 E-value=0.023 Score=62.26 Aligned_cols=269 Identities=14% Similarity=0.164 Sum_probs=161.0
Q ss_pred EEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheee
Q 012043 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML 163 (472)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaL 163 (472)
-+.++||.++||.+.|.+.|.||+.++.+..+.. .-+.++++.++ +++..+.|+++.+=++. ..-.+.+++++
T Consensus 277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~ 350 (587)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK 350 (587)
T ss_pred cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence 3567899999999999999999999987765432 23667775433 44444444443210000 12226678999
Q ss_pred EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccceeeecCcCCCC
Q 012043 164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKIALRREKLGDT 237 (472)
Q Consensus 164 IKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlEvaRTG~iAl~Rg~~~~~ 237 (472)
|.|--.. .--..+++.....+.+|.-++....-|-+.=+.+..+..++.|.. |. +.+......
T Consensus 351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~-----------~~~~~~~~~ 419 (587)
T PRK07431 351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFE-----------LEDSQIEIN 419 (587)
T ss_pred EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhc-----------cCCcccccC
Confidence 9887543 234477888888888898887665666666666667777777653 32 111000000
Q ss_pred cccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCCceEEEE
Q 012043 238 APFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTL 317 (472)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~htL 317 (472)
.-.|+ ..+.-|-.+-. ...+..-+|
T Consensus 420 ~~~~~----------------------------------~~~~~v~gIa~---------------------~~~~~~i~l 444 (587)
T PRK07431 420 PTASG----------------------------------QDEPEVRGVAL---------------------DRNQAQLAI 444 (587)
T ss_pred ccccC----------------------------------CCCCcEEEEEc---------------------cCCEEEEEE
Confidence 00000 00111111111 112222233
Q ss_pred EEEEeCchhHHHHHHHHHhccCceeeeeeeeec-CCCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCchHHH
Q 012043 318 SMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (472)
Q Consensus 318 SilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~t-e~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~~V~ 395 (472)
. .+.++||.++++.+.+.++|.||+.++.... +..+.-.++++++.++ ..+.++.++|.+..+...+ .+.
T Consensus 445 ~-~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~ 516 (587)
T PRK07431 445 R-NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDG 516 (587)
T ss_pred C-CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEe
Confidence 2 4668899999999999999999999987543 3335667888888532 3456666666654444333 244
Q ss_pred HhhheeEEecCcc-c----HHHHHHHHHHhCcEEEEecCChhh
Q 012043 396 RELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDHTIT 433 (472)
Q Consensus 396 REL~LiKV~~~~~-~----r~eI~~ia~iFrakIVDvs~~sit 433 (472)
+.+++|-|--..- . -..+++.....+.++.-++...+.
T Consensus 517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~ 559 (587)
T PRK07431 517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIR 559 (587)
T ss_pred CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceE
Confidence 5677777754321 2 247777778888888887765433
No 97
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.31 E-value=0.0015 Score=73.86 Aligned_cols=91 Identities=20% Similarity=0.356 Sum_probs=75.1
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 012043 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (472)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQI 372 (472)
+.+++..|+. ..+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......++..|++++. .|-..+++|
T Consensus 650 eR~I~V~W~~---~~~~-~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l 725 (743)
T PRK10872 650 ERIVDAVWGE---SYSS-GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV 725 (743)
T ss_pred ceEEEeEecC---CCCc-eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence 3578999972 1122 2356999999999999999999999999999999986544467888888877 677899999
Q ss_pred HHHHhcccceEEEEec
Q 012043 373 VQLLHKLIDLHEVQDI 388 (472)
Q Consensus 373 vkQL~KLidVi~V~dl 388 (472)
+.+|+++-+|.+|...
T Consensus 726 ~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 726 LGKLNQVPDVIDARRL 741 (743)
T ss_pred HHHHhcCCCcCeEEec
Confidence 9999999999999864
No 98
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.29 E-value=0.013 Score=67.86 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=50.9
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe------CChHHHHHHHHHHhcccc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP------GTDESIGKLVQLLHKLID 381 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~------gde~~ieQIvkQL~KLid 381 (472)
..|.|...|+||+|.+|+++|++.|+||.+..+. |.....-.+-.+.+ .+++..++|.+.|.+.++
T Consensus 844 t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~-T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA-TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE-EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999998 44444444444433 234467788888877664
No 99
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=97.29 E-value=0.0015 Score=73.15 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=73.2
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 012043 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (472)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQI 372 (472)
.++++..|+. +.+. .-...|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+.+. .+-+.+..|
T Consensus 594 er~I~v~W~~---~~~~-~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i 668 (683)
T TIGR00691 594 EKIIEVEWNA---SKPR-RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI 668 (683)
T ss_pred ccEEEEEecC---CCCc-eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence 4688999972 1122 335699999999999999999999999999999999654 457877777776 578899999
Q ss_pred HHHHhcccceEEEE
Q 012043 373 VQLLHKLIDLHEVQ 386 (472)
Q Consensus 373 vkQL~KLidVi~V~ 386 (472)
+.+|.++-+|.+|.
T Consensus 669 i~~L~~i~~V~~v~ 682 (683)
T TIGR00691 669 MLKIKTKNDVIVVK 682 (683)
T ss_pred HHHHhCCCCceEEe
Confidence 99999999999985
No 100
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0014 Score=53.51 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK 378 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~K 378 (472)
+|.|...|+||+|.++++.|++.|+||.+-.+..|.+...-..-.|.+.+ ++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999887776555555555532 2445566666654
No 101
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.25 E-value=0.0023 Score=51.91 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=53.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
...|++.-.|+||+++++++.+++.|.||..+...... +.-.+.+.+.++++..+++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG--GRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET--TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc--CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 45899999999999999999999999999999888765 44668888888888999999999876
No 102
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.24 E-value=0.0016 Score=60.00 Aligned_cols=77 Identities=27% Similarity=0.384 Sum_probs=63.5
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEE--eCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV--~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
+.+.+||++.++|+.|.|+++....++++.||-+++..- -+...-+||.+ .+-+..++.|+..|.|+-.|.+|+-+.
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 346799999999999999999999999999999888663 22223366654 477888999999999999999998543
No 103
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0019 Score=51.95 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=36.7
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV 125 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV 125 (472)
.+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 578899999999999999999999999999987553322345554
No 104
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.20 E-value=0.002 Score=59.43 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=63.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEEecC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
+.+||++.++++.|.|+++....+|++.||-+++-.-. -.+...+|+.++ +-+..++.|+..|+|+-.|.+|+-+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 46899999999999999999999999999998877532 235555666655 77889999999999999999998653
No 105
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0027 Score=50.89 Aligned_cols=61 Identities=28% Similarity=0.387 Sum_probs=44.9
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe---C----ChhhHHHHHHHHhc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G----TERVLRQVVEQLNK 141 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~---g----dd~~ieQI~kQL~K 141 (472)
.|.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-. =++.|. | +++..+++.+.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999877744432 233332 1 34456666666654
No 106
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0035 Score=48.66 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=46.1
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhcc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKL 379 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~KL 379 (472)
.|.|...|+||+|++|+++|+..|.||.++.+....+ ..-.++.+.+ +++..++|.+.|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999876543 4444554432 344566666666543
No 107
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0021 Score=51.99 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=46.2
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe----C----ChhhHHHHHHHHhcC
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL 142 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~----g----dd~~ieQI~kQL~KL 142 (472)
+|+++..|+||+|++|++.|++.|.||.+-.+....+.-.-++.|. | ++...+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999885422212344432 2 345577787777664
No 108
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.08 E-value=0.0011 Score=60.22 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=50.1
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHH
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL 375 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQ 375 (472)
|+-..||+++||+||=|..++..++..|+||..++.+.|.+.||-||. |+.. +...+..+.
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmv--V~~~-d~A~~~Lee 61 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMV--VDRP-DEAHSVLEE 61 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEE--cCCh-HHHHHHHHH
Confidence 345689999999999999999999999999999999999999998874 4533 344444443
No 109
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.05 E-value=0.0019 Score=52.60 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=47.3
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL 142 (472)
.+|++.-.|+||+.++|+++++.+|.||..+..-...+.-.|.+.++.+....+++.+.|+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence 578999999999999999999999999999987773222125566665544566666666544
No 110
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0033 Score=51.37 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=44.7
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEE-eC-----ChhhHHHHHHHHhc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV-SG-----TERVLRQVVEQLNK 141 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV-~g-----dd~~ieQI~kQL~K 141 (472)
+|.|++.|+||+|+++++.|++.|+||.+-.+..|.+.-. =++.| ++ +++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999987765532 23333 32 22445556666544
No 111
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.99 E-value=0.0054 Score=49.73 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=53.4
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCChhhHHHHHHHHhcCceeeE
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGTERVLRQVVEQLNKLVNVIK 147 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV~gdd~~ieQI~kQL~KLvdVik 147 (472)
+|.+.+.|+||.|.+|...|+.+|+|+..|---|..... . +=|-++|++..+++++++|.+...=++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 456667899999999999999999999999988876542 2 555677877789999999988654333
No 112
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.99 E-value=0.0061 Score=49.42 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=55.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEE
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~ 384 (472)
+|.+.+.|+||.|.++...|+.+|+|+..|.--|... +.-..+-|=++|++..+++++++|++...=++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 4556678999999999999999999999999888765 44556666677888889999999998655443
No 113
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0036 Score=50.34 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=37.3
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~ 363 (472)
.+.|.+.|+||+|.+|+++|++.|+||.|..+.+.+ +..-.++.+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~--~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG--DMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC--CeEEEEEEEE
Confidence 578899999999999999999999999999887553 3444555553
No 114
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0049 Score=50.43 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=40.9
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~ 363 (472)
|.|.|+..|+||++++++|.|++.|+||.+-.+-.+.+.-.--.-.|.+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec
Confidence 6789999999999999999999999999999888886655444444444
No 115
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0064 Score=54.12 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=59.0
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V 385 (472)
.+.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ++-..+-|=+.|+.+.+.+++++|.+...-++|
T Consensus 40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 3678888889999999999999999999999999988744 444555566778777899999999886664443
No 116
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.91 E-value=0.03 Score=63.76 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=40.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g 364 (472)
..+|.|...|+||+|.+|+++|+..|+||.+..+... ....--.-.|.+.
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d~ 756 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTGA 756 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEECC
Confidence 3689999999999999999999999999999999888 4344444444443
No 117
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.85 E-value=0.049 Score=62.37 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=49.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C---ChHHHHHHHHHHhc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHK 378 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-g---de~~ieQIvkQL~K 378 (472)
...+.|...|+||+|.+|+.+|+.+|+||.+..+........--+.+... | +++..+.|.++|.+
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~ 847 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA 847 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998766444444444322 1 34566777776654
No 118
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.80 E-value=0.0052 Score=58.85 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=68.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchH
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF 393 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~ 393 (472)
..-||+.++|+||||..+||+.+.+|-||.-...---.+....+|-+-++|- +..+.|+..|+..-.|++|+.+...+-
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi-~d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI-DDFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC-CCHHHHHHHhhccceEEEeeecchHHH
Confidence 4579999999999999999999999999987655444455588888888864 467899999999999999998887666
Q ss_pred HHHh
Q 012043 394 AERE 397 (472)
Q Consensus 394 V~RE 397 (472)
++--
T Consensus 81 iyGK 84 (218)
T COG1707 81 IYGK 84 (218)
T ss_pred HhCc
Confidence 5543
No 119
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.77 E-value=0.0048 Score=50.29 Aligned_cols=63 Identities=27% Similarity=0.258 Sum_probs=46.5
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
.+|++.-.|+||+.++|+++++.+|.||..+..-.....-..||.+.++ ....+++.+.|+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHH
Confidence 5789999999999999999999999999999888744444444444444 33455565555443
No 120
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.75 E-value=0.0046 Score=62.64 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=53.0
Q ss_pred ccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhhHHHHHHHHhcCce
Q 012043 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNKLVN 144 (472)
Q Consensus 75 ~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-d~~ieQI~kQL~KLvd 144 (472)
.+|.++.+++...|+||+.++|+++|+.+|.||+.++...+...++ |.+.++.. ...++++...|+++-+
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA 75 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999999874444555 44444422 2347777777766544
No 121
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.65 E-value=0.063 Score=61.89 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=51.7
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe---CChHHHHHHHHHHhcccce
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP---GTDESIGKLVQLLHKLIDL 382 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~---gde~~ieQIvkQL~KLidV 382 (472)
..|.|...|+||+|.+|+++|++.|+||.+-.+..+ +..+-..-.|.. .+++..++|.+.|.+.++|
T Consensus 787 T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred EEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999888877 433333333322 1456788888888877665
No 122
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.65 E-value=0.0034 Score=66.26 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=59.9
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
-.|+|.+.=+|+||++++|+.++++.|+||..+.+....+..++.|-+++ ..-+.++++|+++-+|++|.-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 45899999999999999999999999999999999766644456666665 4466888999999999998753
No 123
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.64 E-value=0.0065 Score=61.59 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLI 380 (472)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-e~~ieQIvkQL~KLi 380 (472)
..|.++++++...|+||+.++||++|+.+|.||..++...+...++-.|.+.+... ...++++...|+++-
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIA 74 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999755556666677666522 223555555555543
No 124
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.63 E-value=0.0088 Score=60.52 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=52.0
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhccc
Q 012043 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLI 380 (472)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd--e~~ieQIvkQL~KLi 380 (472)
.|+++.+++.-.|+||..+.|+++++.+|.||..++.......+.-.|.+.++.+ ...++++...|+++-
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998874344555666565541 223555555555444
No 125
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.012 Score=48.49 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHh
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLH 377 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~ 377 (472)
.+|.|...|+||+|.+|+..|++-|.+|.+-.++.-.. ..-..-.|.+. |++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ge-rv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGG-WFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCC-eEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999988876554 33333334332 3456777777764
No 126
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.013 Score=50.13 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=54.0
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGT-DESIGKLVQLLHKLI 380 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~gd-e~~ieQIvkQL~KLi 380 (472)
.+.+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=++|. +..+++++++|.+-+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 35678888899999999999999999999999999887543 444555556674 677888888887733
No 127
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=96.60 E-value=0.013 Score=66.05 Aligned_cols=88 Identities=18% Similarity=0.378 Sum_probs=73.1
Q ss_pred ccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHH
Q 012043 295 QVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLV 373 (472)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIv 373 (472)
.+++..|+.-. ++.-...|.|...|++|+|+.|+.++++-+.||.+++.... ..++.-|.+.+. .|-..+.+|+
T Consensus 612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~ 686 (701)
T COG0317 612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVL 686 (701)
T ss_pred eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHHH
Confidence 68888998332 33346899999999999999999999999999999999886 556665555555 4778999999
Q ss_pred HHHhcccceEEEEe
Q 012043 374 QLLHKLIDLHEVQD 387 (472)
Q Consensus 374 kQL~KLidVi~V~d 387 (472)
.||..+-+|..|..
T Consensus 687 ~~l~~~~~V~~v~R 700 (701)
T COG0317 687 ARLKQLPDVISVRR 700 (701)
T ss_pred HHHhcCCCeEEEEe
Confidence 99999999999874
No 128
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.59 E-value=0.0051 Score=62.22 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=51.8
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVN 144 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~g--dd~~ieQI~kQL~KLvd 144 (472)
.|+++.|++.-.|+||..+.|+++|+.+|.||+.++.......+. |.+.++. ....++++...|++|-+
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE 75 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999887333344 4444544 12346666666665553
No 129
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.062 Score=62.25 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=50.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhccc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKLI 380 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g------de~~ieQIvkQL~KLi 380 (472)
..|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+-..-.|.+. +++..++|.+.|.+.+
T Consensus 815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999888 5444444444442 2346777777777654
No 130
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.014 Score=48.23 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=46.2
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEE-eC----ChhhHHHHHHHHh
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-SG----TERVLRQVVEQLN 140 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV-~g----dd~~ieQI~kQL~ 140 (472)
.+|.|...|+||+|.+|+..|++.|.+|.+-.++.-.+.-. |-+.- +| |++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999988886555432 43332 23 3466777777763
No 131
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.015 Score=47.61 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=38.8
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS 126 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~ 126 (472)
|.|.|+..|+||++++++|.|++.|+||.+-.+-.+.+.-. =++.|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence 67899999999999999999999999999998877755432 344443
No 132
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.018 Score=51.27 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=56.2
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gdd~~ieQI~kQL~KLvdVikV 148 (472)
+..|.+.+.|+||.|.+|...|+.+|+|+.+|---|+.... + +=|-+.|+...+.+++++|.+...-++|
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 56888888999999999999999999999999988875443 2 5555677766788899998876654444
No 133
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.42 E-value=0.1 Score=60.47 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=48.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-----ChHHHHHHHHHHhccc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLI 380 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-----de~~ieQIvkQL~KLi 380 (472)
...|.|...|+||+|.+|+.+|.+-|+||.+--+..-.+ ..-.+-.|.+. +++..+.|.++|..-+
T Consensus 808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge-ra~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE-RVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc-eEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999988876444 44444444432 2455667777665544
No 134
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.022 Score=48.68 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=50.6
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhhHHHHHHHHhc
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK 141 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-d~~ieQI~kQL~K 141 (472)
.+-+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+.... + +=|-++|. +..++++++.|.+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 346777888999999999999999999999999988876543 2 44556664 6677778877766
No 135
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.24 E-value=0.0093 Score=63.01 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=59.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
-.|+|.+.=+|+||++++|+.++++.|+||.++.+.... +..-|+|-+++ ..-+.++++|+++-+|++|.-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 458999999999999999999999999999999996554 55555555554 4567899999999999999754
No 136
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.22 E-value=0.017 Score=55.42 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=63.1
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
..-||+.++|+||||..++|+.+.+|-||.-...-...+ .+.+-+-+.|-+ ..+.++..|+-+-.|++|+.+..-+.
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence 346899999999999999999999999998655433222 234666777644 58899999999999999998887555
Q ss_pred hhhh
Q 012043 157 VERE 160 (472)
Q Consensus 157 V~RE 160 (472)
++--
T Consensus 81 iyGK 84 (218)
T COG1707 81 IYGK 84 (218)
T ss_pred HhCc
Confidence 5543
No 137
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.19 E-value=0.022 Score=64.38 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=59.5
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEEEec
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
.-.|.|.+.|++|+|+.|+.+++..+.||.+++.... +.+. +++.+. .+-..+++|+++|.++-+|++|...
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 3489999999999999999999999999999997543 3332 444443 4678999999999999999999864
No 138
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.15 E-value=0.011 Score=64.41 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=60.1
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
..|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-.++++-|+..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence 34778777799999999999999999999999999987665553334444555668888999999999998765
No 139
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.024 Score=47.16 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=46.5
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeee--ecCCCCeEEEEEEEeC----ChHHHHHHHHHHhc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVPG----TDESIGKLVQLLHK 378 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg--~te~~~iSRiTIVv~g----de~~ieQIvkQL~K 378 (472)
+|.|...|+||+|.+|+..|.+-|++|.+-.++ .-...-+.-+.+-.+| |++..+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999998887 4444444444443334 44556677766654
No 140
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.10 E-value=0.022 Score=47.38 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=45.1
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeee--ecCCCc--EEEEEEeC----ChhhHHHHHHHHhc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKA--LFTIVVSG----TERVLRQVVEQLNK 141 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg--~Ted~~--~iTIVV~g----dd~~ieQI~kQL~K 141 (472)
+|.|.+.|+||+|.+|+..|++-|++|.+--++ .-.+.. .|-+..+| |+...+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999998888 333322 25554434 44556667666644
No 141
>PRK07334 threonine dehydratase; Provisional
Probab=96.07 E-value=0.027 Score=59.01 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=63.1
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHH
Q 012043 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESI 369 (472)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~-gde~~i 369 (472)
..++..+|. ..++ ...|.|.+.|+||+|++|+.+++.-+.||.+++..... ..+..+|.+++. .|.+.+
T Consensus 313 ~~il~~~l~------~~~y-~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L 385 (403)
T PRK07334 313 ANVLLRGLV------RAGR-LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHL 385 (403)
T ss_pred HHHHHHHHH------hCCC-EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHH
Confidence 344555554 3343 46999999999999999999999999999999986431 357788887776 578899
Q ss_pred HHHHHHHhcc
Q 012043 370 GKLVQLLHKL 379 (472)
Q Consensus 370 eQIvkQL~KL 379 (472)
++++++|++.
T Consensus 386 ~~vi~~Lr~~ 395 (403)
T PRK07334 386 QEVIAALRAA 395 (403)
T ss_pred HHHHHHHHHc
Confidence 9999999985
No 142
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.027 Score=44.57 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=51.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhc
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHK 378 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~K 378 (472)
+++.+.++||-|.++..+++. |-||-.+.-.... .+..++.+.++. +.+.++++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999887665 667788888773 55789999999876
No 143
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.06 E-value=0.016 Score=55.89 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=49.2
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHH
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGK 371 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g--de~~ieQ 371 (472)
|+|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+-.=|.|-+++ +++.+++
T Consensus 149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 67778889999999999999999999999999999988888778888875 5555554
No 144
>PRK07431 aspartate kinase; Provisional
Probab=96.01 E-value=0.32 Score=53.48 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=40.5
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
.++||++.|+...+++.|+|+..++. .=-+++++|+ ++..++.++.|++-.
T Consensus 530 ~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~--~~~~~~av~~Lh~~f 580 (587)
T PRK07431 530 PGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVA--EDDGVKALQAVHQAF 580 (587)
T ss_pred cCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEe--HHHHHHHHHHHHHHh
Confidence 58899999999999999999988882 2235667776 567788888887765
No 145
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.99 E-value=0.036 Score=53.35 Aligned_cols=114 Identities=15% Similarity=0.169 Sum_probs=78.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc---e-EEEEec
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID---L-HEVQDI 388 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLid---V-i~V~dl 388 (472)
...+|+++-.|+||..++|+.+++..|.||.......... .--|.+.+.+....+.++...|.++.+ + +.++..
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~ 84 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT 84 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence 4569999999999999999999999999999988776644 455777778887888888888877763 2 234343
Q ss_pred CCchHHHHhhh-eeEEecCcccHH----HHHHHHHHhCcEEEEecCC
Q 012043 389 THLPFAERELI-LIKIAVNTAARR----DVLDIAKIFRARAVDVSDH 430 (472)
Q Consensus 389 t~~~~V~REL~-LiKV~~~~~~r~----eI~~ia~iFrakIVDvs~~ 430 (472)
.... ..+.. .+.|.+...+|+ +|-+....++..|.+.+.+
T Consensus 85 ~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 85 TARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred cccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 2211 22332 366666656663 4444445556666666544
No 146
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.94 E-value=0.033 Score=57.57 Aligned_cols=67 Identities=15% Similarity=0.312 Sum_probs=56.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee---ecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg---~te~~~iSRiTIVv~g-de~~ieQIvkQL~KL 379 (472)
+.++|++.+.|+||.|.+++.+++..|.||.++... .....+...+++.++. +.+.+++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999999776 3334577788888884 567788999888764
No 147
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.91 E-value=0.03 Score=46.61 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=48.2
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEE-EeC----ChhhHHHHHHHHhcC
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL 142 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIV-V~g----dd~~ieQI~kQL~KL 142 (472)
.+.|...|+||+|.+|+..|++.|++|.+-.++...+... +-|. .+| |+...+.|.+.|.+.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999987655433 4443 234 566677777777543
No 148
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.90 E-value=0.086 Score=53.72 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeee-cCCC-CeEEEEEEEe--C--ChHHHHHHHHHHhcccce
Q 012043 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGP-AEKE-GLSCITTVVP--G--TDESIGKLVQLLHKLIDL 382 (472)
Q Consensus 309 ~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~-te~~-~iSRiTIVv~--g--de~~ieQIvkQL~KLidV 382 (472)
.+.|.+++|++.-.|+||+.++||++++..|.||..++.-. +... -+.|+.++.. + +...+++-.+++-+-.++
T Consensus 4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45577789999999999999999999999999999998851 2223 3445555533 2 223444444444444442
Q ss_pred -EEEEec
Q 012043 383 -HEVQDI 388 (472)
Q Consensus 383 -i~V~dl 388 (472)
++++..
T Consensus 84 ~~~i~~~ 90 (289)
T PRK13010 84 QWAIHPD 90 (289)
T ss_pred eEEEecC
Confidence 344443
No 149
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.045 Score=45.01 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=48.3
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhhHHHHHHHHhc
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gdd~~ieQI~kQL~K 141 (472)
.+.+.+.|+||.|.++...|..+|+|+..|.--|..... + +=|-++|+...++++++.|.+
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 345566899999999999999999999999988865543 2 556677877777788777765
No 150
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.052 Score=44.68 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=50.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
+|.+.+.|+||.|.++...|..+|+|+..|.--|.-. +.-..+-|=++|+...+.++++.|.+
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999888654 34455566677887788888888876
No 151
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.85 E-value=0.04 Score=62.76 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=59.5
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEEEec
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+. +++++. .|-..+.+|+++|.++-+|++|...
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 48999999999999999999999999999999854332332 444444 4678999999999999999999864
No 152
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.85 E-value=0.036 Score=62.44 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=58.4
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
.-.|.|.+.|++|+|+.|+.+++.-+.||.++++.... .+. +.+.+. .+-..+..|+.+|.++-+|++|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 44899999999999999999999999999999986543 333 444443 46789999999999999999885
No 153
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.83 E-value=0.22 Score=57.69 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=48.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C---ChHHHHHHHHHHhcccc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHKLID 381 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--g---de~~ieQIvkQL~KLid 381 (472)
..+|.|...|+||+|.+|++.|+..|.||.+-.+... +..+--.-.|.+ | ++...++|.+.|.+.++
T Consensus 796 ~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 796 RTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred eEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 3589999999999999999999999999999988888 433333333333 2 12333677777665443
No 154
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.70 E-value=0.025 Score=54.59 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=45.7
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC--ChhhHHH
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ 134 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g--dd~~ieQ 134 (472)
.|+|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+ +|.|.+++ +++.+++
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 47888888999999999999999999999999999876555 47777775 4454443
No 155
>PRK11899 prephenate dehydratase; Provisional
Probab=95.68 E-value=0.06 Score=54.63 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=57.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEE
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~ 384 (472)
+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+.. ++-..+-|=+.| ++..+.+.+++|++.-.-++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~k 267 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVR 267 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEE
Confidence 567777889999999999999999999999999999854 566676677777 45678888888887655333
No 156
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.58 E-value=0.025 Score=61.57 Aligned_cols=73 Identities=22% Similarity=0.369 Sum_probs=60.7
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
.|+|-+.-.|+||++.+|+.+|++.++||.++.++..+..+..=|.+-+ |+..-+.++++|+++.+|.+|..+
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~--D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV--DDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC--CCCCCHHHHHHHhcCCCcceEEEE
Confidence 3788777799999999999999999999999999998776665554444 445668888999999999998865
No 157
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=95.56 E-value=0.037 Score=52.50 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=60.6
Q ss_pred EEEEEEEE--eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEE
Q 012043 314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 314 ~htLSilV--eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~ 386 (472)
.++|.++. .+.||+|+.|+++.+.||++|..+-....|-.+-+++||++++ ..-..++.||.|+--|.+|.
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence 35677776 4689999999999999999999998888877888999999985 35667899999999888875
No 158
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.54 E-value=0.018 Score=55.06 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=52.2
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc----E----EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----L----FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~----~----iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
..+.+.+-+.|+||.+++++.+|.++|+||++|..-..-.++ . +|+-+.. ...+.+|..+++.|-|=+.|+
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v~ 169 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNVD 169 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcce
Confidence 357899999999999999999999999999999887544443 2 3333332 335777778877766555444
No 159
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.50 E-value=0.064 Score=44.69 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHhcc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKL 379 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~--g----de~~ieQIvkQL~KL 379 (472)
.++.|...|+||+|.+|+..|++-||+|.+-.++...+. ....--+.+ | |+...+.|.+.|.+.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ger-a~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDD-AHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCce-EEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999888875543 333333333 3 566677777777654
No 160
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.42 E-value=0.038 Score=55.95 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=47.4
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhc
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~K 141 (472)
++|++.-.|+||+.++|+++++.+|.||..++.-.....+. |.+.++.++ ...+++...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 37899999999999999999999999999999776655566 555566433 345666655544
No 161
>PRK06635 aspartate kinase; Reviewed
Probab=95.30 E-value=0.1 Score=54.26 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=82.5
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeCChhhHHHHHHHHhcCc---eeeEEEecCCchhhhhhe
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKLV---NVIKVEDISNEPHVEREL 161 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~gdd~~ieQI~kQL~KLv---dVikV~dlt~~~~V~REL 161 (472)
..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++. ...++..+.|+++. .+..+. +.+.+
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i~-------~~~~i 340 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--DDLEKALELLEEVKDEIGAESVT-------YDDDI 340 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence 67899999999999999999999998776554 3457888763 33455666666632 222222 56678
Q ss_pred eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 162 aLIKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
+++.|... +..-.++++....++..|.-++....-+-++=+.+..+..++.|.
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh 398 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH 398 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence 88888532 234457888888889889877644444545555566666666664
No 162
>PRK07334 threonine dehydratase; Provisional
Probab=95.29 E-value=0.071 Score=55.95 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=51.7
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC---CCc--EEEEEEe-CChhhHHHHHHHHhcC
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL 142 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te---d~~--~iTIVV~-gdd~~ieQI~kQL~KL 142 (472)
...|.|.+.|+||+|++|+.+++.-+.||.+++..... ..+ .+.+++. .|.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999986431 223 2454444 4778899999999885
No 163
>PRK06382 threonine dehydratase; Provisional
Probab=95.29 E-value=0.07 Score=56.10 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=54.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee----ecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG----PAEKEGLSCITTVVPGT-DESIGKLVQLLHKL 379 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg----~te~~~iSRiTIVv~gd-e~~ieQIvkQL~KL 379 (472)
++..|.+.+.|+||.|.+++.+|...|.||.++... +. .++...+++.++.. .+..++|.+.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999876 33 35677888888863 45667899988764
No 164
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.27 E-value=0.029 Score=61.02 Aligned_cols=71 Identities=17% Similarity=0.356 Sum_probs=57.6
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
-|+|-+.-.|+||++.+|+.+++..++||.++.++..+..+. |.|.+ |+..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~--D~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL--DQPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc--CCCCCHHHHHHHhcCCCccEEEEE
Confidence 467777778999999999999999999999999998766554 44545 445567788888888888888754
No 165
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.24 E-value=0.079 Score=54.81 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=51.0
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeee---ecCCCc--EEEEEEeC-ChhhHHHHHHHHhcC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL 142 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg---~Ted~~--~iTIVV~g-dd~~ieQI~kQL~KL 142 (472)
+.++|++.+.|+||.|.+++.++++.|.||.++... .....+ .+++.++. +.+.+++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 456999999999999999999999999999999765 222223 37777764 456778888888664
No 166
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.09 E-value=0.3 Score=49.84 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=36.3
Q ss_pred ccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeee
Q 012043 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG 113 (472)
Q Consensus 75 ~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg 113 (472)
++|.+++|++.-.|+||+.++|+++++..|.||..++.-
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 457788999999999999999999999999999999975
No 167
>PRK11899 prephenate dehydratase; Provisional
Probab=95.09 E-value=0.15 Score=51.86 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=52.2
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvd 144 (472)
+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+... + + +-|-+.| ++..+.+.+++|.+.-.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~ 264 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE 264 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 5677778899999999999999999999999999887654 3 2 5555666 45667888888876554
No 168
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.06 E-value=0.029 Score=53.63 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=53.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC----CeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE----GLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~----~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~ 386 (472)
..+.+.+.++||||.++++|.+|.++|+||++|..-..-.| .+-.+.|.+.- ---.+.+|..+++.|-|=+.|+
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v~ 169 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNVD 169 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcce
Confidence 35899999999999999999999999999999987644333 33344444331 2246778888877765544443
No 169
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.05 E-value=0.066 Score=43.85 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=46.0
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccce
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDL 382 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL~KLidV 382 (472)
..+.||++.++.+.|++.|.|++-++.++ .+++++++.++ +.+++|++.|+++=+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 46789999999999999999999996422 67999999664 3799999999995444
No 170
>PRK08198 threonine dehydratase; Provisional
Probab=94.99 E-value=0.12 Score=53.93 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=57.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~g-de~~ieQIvkQL~KL 379 (472)
+..+|++.+.|+||.|.++..+++..|.||.+++-.+.. ..+...+++.++. +.+.+++|.+.|++.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999987632 2578889999884 556789999999765
No 171
>PRK06382 threonine dehydratase; Provisional
Probab=94.96 E-value=0.091 Score=55.25 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=50.8
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeee----ecCCC-cEEEEEEeCC-hhhHHHHHHHHhcC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDK-ALFTIVVSGT-ERVLRQVVEQLNKL 142 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg----~Ted~-~~iTIVV~gd-d~~ieQI~kQL~KL 142 (472)
++..|.+.+.|+||.|.+++.+|...|.||.++... +.+.. ..+++.++.. .+..++|.+.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999875 33222 2477777754 34556888888663
No 172
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.85 E-value=0.11 Score=38.04 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=39.9
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL 376 (472)
+.|.||++.++...+++.|.||+.++.++... +.-.++++++. +..++..+.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~~--~~~~~~~~~l 60 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVPK--SDLEKALAIL 60 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEeH--HHHHHHHHHh
Confidence 57899999999999999999999998876543 33557777763 4455554443
No 173
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.81 E-value=0.14 Score=40.58 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=45.8
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeC-ChhhHHHHHHHHhc
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSG-TERVLRQVVEQLNK 141 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~g-dd~~ieQI~kQL~K 141 (472)
+++.+.++||-|.+++.+++. |.||-.+.-..... ...+.++++. +.+.++++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 99999998765442 2345555552 45678899988865
No 174
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.73 E-value=0.13 Score=37.68 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=37.7
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCChhhHHHHHHH
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ 138 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~iTIVV~gdd~~ieQI~kQ 138 (472)
+.|.||++.++...+++.|.||+.++.++..... .++++++. ...++..+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~ 59 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI 59 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence 5789999999999999999999999887644332 37777753 334444443
No 175
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=94.66 E-value=0.13 Score=41.48 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=44.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHK 378 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL~K 378 (472)
..+.||++.|+...+++.|+|++.++.++ .+++++++.++ +.+..|.+.|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 56789999999999999999999986422 77999999655 488999999999
No 176
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.65 E-value=0.16 Score=57.66 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=61.5
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
.-...|.|...|++|+|+.|+.++++-+.||.+++.... +.+ . |+|.|+ +-..+.+|+.||..+-+|+.|..
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence 346789999999999999999999999999999998886 333 2 555554 67889999999999999999874
No 177
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.65 E-value=0.096 Score=54.09 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=52.8
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCcee
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNV 145 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdV 145 (472)
-|.+.|.+.|+||.|++++.++.+.|+||+.|.+-++.+. |.+.|.+.. +...++..+.|.+-..+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWTY 357 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCcc
Confidence 4899999999999999999999999999999999876433 458888873 45566666777665443
No 178
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.61 E-value=0.17 Score=42.00 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=58.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C-hHHHHHHHHHHhcccceEEEEecCCch
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-d-e~~ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
.++.+.+.++||-|.+++.+++ |-||..+.-..... +-.++.++++. + .+.++++.+.|++.= .++.+.++.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~ 76 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE 76 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence 4789999999999999999999 77888776665443 67778888774 3 478999999988743 3556677665
Q ss_pred HHH
Q 012043 393 FAE 395 (472)
Q Consensus 393 ~V~ 395 (472)
...
T Consensus 77 ~~~ 79 (85)
T cd04906 77 LAK 79 (85)
T ss_pred HHH
Confidence 543
No 179
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.55 E-value=0.089 Score=40.32 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=39.3
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
+.|+||++.++...+++.|.||+.+..+..+.. -.+++++++. +..+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998877654332 3457777773 334444444444
No 180
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.50 E-value=0.091 Score=53.28 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=48.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK 378 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~K 378 (472)
++|++.-.|+||+.++||++++.+|.||..++.--....+.--|.+.++.++ ...+++...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3789999999999999999999999999999987765556665666666433 234555544444
No 181
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.50 E-value=0.063 Score=58.48 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=59.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
|+|-+.-.|+||++.+|+.+++..++||.++.++..+..+..=|.+-++ +..-+.++++|+++.+|.+|..+
T Consensus 452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence 6787777899999999999999999999999999987776655555555 45567888888889999888765
No 182
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.45 E-value=0.11 Score=39.80 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=38.4
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhhHHHHHHHHhc
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
+.|+||++.++...+++.|.||+.+..+..+.. ..+++++.. ...+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998876654432 247777763 234444444444
No 183
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.40 E-value=1.2 Score=42.35 Aligned_cols=137 Identities=22% Similarity=0.259 Sum_probs=94.7
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCC-hhhHHHHHHHHhc-CceeeEEEe
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNK-LVNVIKVED 150 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV~gd-d~~ieQI~kQL~K-LvdVikV~d 150 (472)
.+|+.++.|-.+|+||-|-++..=.+.-|-||-++.=...+..+ + +.|++.+| +.....+.+-+++ =+.++++..
T Consensus 2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg 81 (170)
T COG2061 2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG 81 (170)
T ss_pred cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence 36889999999999999999999999999999887755443322 3 78888887 5556667777733 355555543
Q ss_pred cCCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 012043 151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 151 lt~~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs--------~~s--l~iE~TG~~~KIdafi~~L~~ 215 (472)
... ..+-...||-=-+...-+.-|-.+-.+-+|.++|++ +.+ ++|+..| .+|++..++.|+.
T Consensus 82 ~~~--~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e 153 (170)
T COG2061 82 ARL--REKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE 153 (170)
T ss_pred cCc--ceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence 332 222334555434444556678888889999999984 233 5555554 5777777777764
No 184
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.38 E-value=0.041 Score=46.01 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=48.6
Q ss_pred EEEEEEcC-cchHHHHHHHHHhccCceeeeEeeeecCC---------Cc-EEEEEEeCChhhHHHHHHHHhcCce
Q 012043 81 TISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLVN 144 (472)
Q Consensus 81 tISIlVeN-~pGVL~RIagLFsRRGyNIeSLtVg~Ted---------~~-~iTIVV~gdd~~ieQI~kQL~KLvd 144 (472)
+++++-++ ++|.+++|+.+++.+|+||+.+.-= +.. +- .|.+.++|.+..++.+.++|.++-.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~ 74 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS 74 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36788899 9999999999999999999988752 211 22 3677788877788888888876543
No 185
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.37 E-value=0.22 Score=50.97 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=61.0
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 012043 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V 385 (472)
+..+.+|.+.+.|+||.|-++-+.|+.||+|+..|.--|+.. ++-..+-|=+.| ++..+.+..+.|.++-..+++
T Consensus 191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 456889999999999999999999999999999999999874 565666665665 556688888888877665555
No 186
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.24 E-value=0.19 Score=41.12 Aligned_cols=56 Identities=16% Similarity=0.365 Sum_probs=44.2
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHHhcCcee
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNV 145 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL~KLvdV 145 (472)
..+.||++.+|.+.|++.|.|++-++.++ .-++++++.++ +.+++|.+.|+++-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 46789999999999999999999997522 44777777544 3788999999985444
No 187
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.12 E-value=0.14 Score=52.93 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=48.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~--~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
-|.+.+.+.|+||+|.++++++.+.|+||+.|.+-++-. .++-|+++-- ++..++..+.|++-.
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~ 355 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN---EEDRERAKALLEEFW 355 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC---HHHHHHHHHHHHhcC
Confidence 489999999999999999999999999999999976543 3565555543 344555555555443
No 188
>PRK08198 threonine dehydratase; Provisional
Probab=93.89 E-value=0.28 Score=51.31 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=51.5
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC---Cc--EEEEEEeC-ChhhHHHHHHHHhcC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KA--LFTIVVSG-TERVLRQVVEQLNKL 142 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~--~iTIVV~g-dd~~ieQI~kQL~KL 142 (472)
+..++++.+.|+||.|.++..+++..|.||.+++...... .+ .++++++. +.+.+++|++.|++.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 4579999999999999999999999999999999875321 23 26666663 455788899988664
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.88 E-value=0.55 Score=48.91 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=89.3
Q ss_pred EEEEEE---EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 80 htISIl---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
..+++. +.|+||++.|+...|.+.|+||+.++.+.++ .-++++++. +.++++.+.|++...-..... -.
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~~----i~ 332 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLDR----VE 332 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCce----EE
Confidence 457776 7899999999999999999999999876544 337788863 345666666666432211111 12
Q ss_pred hhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 157 V~RELaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
+.+.+++|.|--.. ..-..+++.....+.+|.-++....-+-+.=+.+..+..++.|..
T Consensus 333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~ 396 (401)
T TIGR00656 333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE 396 (401)
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence 66788888886542 334578888888889998888766666666666777777777653
No 190
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.84 E-value=0.14 Score=41.99 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=44.0
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH----HHH-HHHHHHhcccce
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE----SIG-KLVQLLHKLIDL 382 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~----~ie-QIvkQL~KLidV 382 (472)
+.+.||++.+|...|++.|+||+-++.++ -.++++++.++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 668999987653 344 688888885444
No 191
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.70 E-value=0.077 Score=44.36 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=48.7
Q ss_pred EEEEEeC-chhHHHHHHHHHhccCceeeeeeeee-------cCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 317 LSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGP-------AEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 317 LSilVeN-~pGVL~RVtgLFsRRgyNIeSLtVg~-------te~~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
++++-.+ ++|.+++|+.+++.+|.||+.|.-=. +..+...-|.+-+.+.+...+.+.++|.++-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 6788888 99999999999999999999987621 1122455677777877677788888777553
No 192
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.68 E-value=0.12 Score=54.48 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.6
Q ss_pred EEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043 314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 314 ~htLSilVe-N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd 365 (472)
.|.|.+.+. |+||+|.+|+++|+++|+||.+|....+....+. +-|-+.+.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~ 346 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG 346 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence 488999995 9999999999999999999999999554443333 66666643
No 193
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=93.51 E-value=0.4 Score=52.17 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCe--EEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGL--SCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 308 ~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~i--SRiTIVv~gde~~ieQIvkQL~KLidVi~V 385 (472)
+..+..+-+|.+.+.|+||.|.++-.+|+.+|+|+..|.--|+....- ..+-|=++|+...+.++++.|.+..+.+.|
T Consensus 25 ~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~ 104 (464)
T TIGR01270 25 EEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEV 104 (464)
T ss_pred cCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhccccee
Confidence 445556677777789999999999999999999999998888754332 355566778888899999999998887666
Q ss_pred E
Q 012043 386 Q 386 (472)
Q Consensus 386 ~ 386 (472)
.
T Consensus 105 ~ 105 (464)
T TIGR01270 105 S 105 (464)
T ss_pred c
Confidence 4
No 194
>PRK11898 prephenate dehydratase; Provisional
Probab=93.46 E-value=0.42 Score=48.45 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=49.9
Q ss_pred EEEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043 79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKLVN 144 (472)
Q Consensus 79 ~htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~-iTIVV~g--dd~~ieQI~kQL~KLvd 144 (472)
+-.|.+.+.|+ ||.|.++.+.|+++|+|+..|---|.... .+ +=|-++| ++..++++++.|++...
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56677777665 99999999999999999999998886543 22 3344444 44478888888888654
No 195
>PRK12483 threonine dehydratase; Reviewed
Probab=93.42 E-value=2 Score=47.36 Aligned_cols=132 Identities=13% Similarity=0.199 Sum_probs=91.2
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEE--EeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIV--V~gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
+++.+++...++||-|.+++.+++.+ ||..+.--..... ..+.++ +.+.++..++|+++|++.= .++.++++.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn 419 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD 419 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence 57899999999999999999999988 9998776542222 234444 4444444599999997743 577888887
Q ss_pred hh---------------hhhheeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe-----cCCE----EEEEEeCChhHHHH
Q 012043 155 PH---------------VERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI-----SEHA----LTIEVTGDPGKMVA 208 (472)
Q Consensus 155 ~~---------------V~RELaLIKV~~~~~~r~eI~~l~~~FrAk--IVDv-----s~~s----l~iE~TG~~~KIda 208 (472)
+. +.|| +|+.|..+ |......+.++.++-+ |-.. +.+. +=|++. .++.+.
T Consensus 420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~ 495 (521)
T PRK12483 420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA 495 (521)
T ss_pred HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence 65 3444 47777775 6777888888888762 2221 1111 236763 377788
Q ss_pred HHHHhccCC
Q 012043 209 VQRNLSKFG 217 (472)
Q Consensus 209 fi~~L~~fG 217 (472)
|++.|+..|
T Consensus 496 ~~~~l~~~g 504 (521)
T PRK12483 496 LDAALAALG 504 (521)
T ss_pred HHHHHHHCC
Confidence 999998766
No 196
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=93.33 E-value=0.22 Score=40.74 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=44.9
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--H-HHHHHHHHHhcccce
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--E-SIGKLVQLLHKLIDL 382 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~-~ieQIvkQL~KLidV 382 (472)
....||++.+|.+.|++.|.|++-+..++ ..++++++.++ + .++.|.+-|+|+-+|
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 35679999999999999999999997522 66889988543 3 788999999985433
No 197
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.16 E-value=0.38 Score=49.21 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=55.2
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEe--CChhhHHHHHHHHhcCceeeEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVS--GTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~--gdd~~ieQI~kQL~KLvdVikV 148 (472)
.+.+|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . |-|=+. .++..+.+..+-|.++-..+|+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 47788899999999999999999999999999998887743 3 2 444454 4566677777777776665554
No 198
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.14 E-value=0.43 Score=50.55 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=56.6
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeC--ChHHHHHHHHHHhcccceEE
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPG--TDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~ 384 (472)
+-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+... +-..+-|=+.| ++..+++..++|++.-.-++
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~k 370 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSLK 370 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEE
Confidence 5677777889999999999999999999999999887764 55666666776 44568889999888655333
No 199
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.10 E-value=0.24 Score=57.19 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=51.3
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChhhHHHHHHHHhcCcee
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV 145 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g----dd~~ieQI~kQL~KLvdV 145 (472)
....|.|.+.|+||+|.+|++.|++.|+||.+-.+..+.+.-.=++.|.+ +++..+.|.+.|.+.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999888877222122333332 346678888888776654
No 200
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.08 E-value=0.27 Score=51.86 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=40.2
Q ss_pred EEEEEEEEc-CcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCCh
Q 012043 79 RHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTE 129 (472)
Q Consensus 79 ~htISIlVe-N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~gdd 129 (472)
-+.|.+.+. |+||+|.+|+++|+++|+||.+|....+..... +-|-+.+.+
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~ 347 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS 347 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence 578999995 999999999999999999999999854443333 666666433
No 201
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=93.07 E-value=0.44 Score=38.47 Aligned_cols=52 Identities=15% Similarity=0.399 Sum_probs=42.7
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHHhc
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK 141 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL~K 141 (472)
..+.||++.||...|++.|+|++.++.++ ..+++++..++ ..++.|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~----~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE----VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCC----cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 56789999999999999999999886322 45788887554 488899999999
No 202
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.07 E-value=0.29 Score=40.13 Aligned_cols=56 Identities=13% Similarity=0.392 Sum_probs=42.3
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh----hHH-HHHHHHhcCcee
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV 145 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~----~ie-QI~kQL~KLvdV 145 (472)
+.+.||++.+|...|++.|+||+-++.++ .-++++++.++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 447777776552 344 577888885443
No 203
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.01 E-value=0.5 Score=39.19 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=52.7
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC-C-hhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g-d-d~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
.++.+.+.|+||-|.+++.+++ |.||..+.-.... +.+.+.++++. + .+.++++.+.|++.= .++.++++.+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~ 77 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL 77 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence 4789999999999999999999 7788876665433 33445555542 3 467888888887743 35566666654
Q ss_pred h
Q 012043 157 V 157 (472)
Q Consensus 157 V 157 (472)
.
T Consensus 78 ~ 78 (85)
T cd04906 78 A 78 (85)
T ss_pred H
Confidence 4
No 204
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=92.75 E-value=0.49 Score=35.31 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=38.8
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
..+.||++.++.+.+++.|.|++.++.. + .+++++++. ...+++.+-|+|.
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~--~d~~~~~~~l~~~ 60 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDE--DDAEKAVRALHEA 60 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeH--HHHHHHHHHHHHH
Confidence 4577999999999999999999999842 1 568888884 4455556666554
No 205
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.70 E-value=0.46 Score=45.31 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=55.9
Q ss_pred ceEEEEEEEE--cCcchHHHHHHHHHhccCceeeeEeeeec--CCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 77 VKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 77 ~~~htISIlV--eN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
|--+.|.+.. .+.||+|+.|+++.+.||++|..+-.... .++..+||++++ ..-..++.||.|+--|.+|.
T Consensus 91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence 4467888887 46899999999999999999998776633 344568999874 45566889999998888875
No 206
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.65 E-value=0.35 Score=37.05 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=40.2
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
.+.||++.++...+++.|.|++.++-+.++ .++.++++.+ ..+++++.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~--~~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK--DAVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence 468999999999999999999999877643 7788888854 35555666655
No 207
>PRK11898 prephenate dehydratase; Provisional
Probab=92.32 E-value=0.74 Score=46.68 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=53.0
Q ss_pred EEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 012043 314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID 381 (472)
Q Consensus 314 ~htLSilVeN~-pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd--e~~ieQIvkQL~KLid 381 (472)
+-.|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|... +.-..+-+=++|+ +..++++++.|++.-.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56777778775 9999999999999999999999988654 3445555555654 3478999999988655
No 208
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=92.30 E-value=0.36 Score=36.92 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=39.8
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHH
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLL 376 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL 376 (472)
.++||+..+|..+|.+.|.|++-++.++ -.+++++..++ +.++.+++.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence 4679999999999999999999996422 56889998765 6777777765
No 209
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.30 E-value=0.46 Score=55.34 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=49.4
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEE-e----CChhhHHHHHHHHhcCce
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVV-S----GTERVLRQVVEQLNKLVN 144 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV-~----gdd~~ieQI~kQL~KLvd 144 (472)
....|.|...|+||+|.+|++.|++.|+||.+..+. |.+.. . +.|.- + .++...+.|.+.|.+.++
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~-T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA-TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE-EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999998 44432 2 33332 1 234457778888876653
No 210
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.17 E-value=1.4 Score=41.87 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=84.3
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhcc-cceEEEEec
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKL-IDLHEVQDI 388 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd-e~~ieQIvkQL~KL-idVi~V~dl 388 (472)
+|+-+|.|...|+||=|-++..=.|.-|-||-|+.=...+. .+--+.-|++.+| ++...++.+-+++. +.++++...
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~ 82 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA 82 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence 47899999999999999999999999999998877665443 5677788888887 66677777777332 334443221
Q ss_pred CCchHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEec
Q 012043 389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 389 t~~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs 428 (472)
..-.+-...||-=-+...-+.-|-++-.+-+|.++|++
T Consensus 83 --~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~ 120 (170)
T COG2061 83 --RLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLS 120 (170)
T ss_pred --CcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEE
Confidence 22223334555544566667788888889999999987
No 211
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.02 E-value=0.57 Score=49.62 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=52.2
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvd 144 (472)
+-.|.+.+.|+||.|.++.+.|+.||+|+.+|---|+... + + |=|-+.| ++..+++..++|++.-.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 5667777899999999999999999999999998887765 2 2 4555665 44568888888877654
No 212
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=91.91 E-value=0.49 Score=36.16 Aligned_cols=50 Identities=14% Similarity=0.402 Sum_probs=39.0
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHH
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL 139 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL 139 (472)
..++||+..+|...|.+.|.|++.++.++ .-+++++..++ +.++.+++.|
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence 34679999999999999999999996422 45888887655 5677776665
No 213
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.85 E-value=0.85 Score=49.35 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=52.2
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhhHHHHHHHHhcCc
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV 143 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-d~~ieQI~kQL~KLv 143 (472)
+-.|.+.+.|+||.|.+|..+|+.+|+|+..|---++.... . +=|-++|. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 56788888999999999999999999999999888765442 2 44555565 467888999888876
No 214
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=91.84 E-value=0.56 Score=38.32 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=42.6
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--h-hHHHHHHHHhcCcee
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVNV 145 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~-~ieQI~kQL~KLvdV 145 (472)
.-..||.+.+|.+.|++.|.|++-+..++ .-+++++..++ . .++.|.+-|+|+-+|
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 34579999999999999999999997522 44777776432 3 788899999884433
No 215
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=91.56 E-value=0.62 Score=35.40 Aligned_cols=52 Identities=25% Similarity=0.450 Sum_probs=39.9
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
..+.||++.|+...+++.|+|++.++-+..+ -+++++++.+ ..++.++.|++
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~--~~~~~~~~lh~ 62 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED--DATKALRAVHE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 3478999999999999999999999876533 7788888853 34555555554
No 216
>PRK08210 aspartate kinase I; Reviewed
Probab=91.54 E-value=2.9 Score=43.82 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=79.4
Q ss_pred EEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhh
Q 012043 80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (472)
Q Consensus 80 htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~ 158 (472)
..|++.-.|. ||.++||.+.|.+.|+||+.++... + -+++++.. ..++++.+.|+++- ..-.+.
T Consensus 272 ~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~~ 336 (403)
T PRK08210 272 TQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSVR 336 (403)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEEe
Confidence 3556655555 9999999999999999999997662 1 35566653 33556666666631 022367
Q ss_pred hheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 159 RELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 159 RELaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
+.+++|.|-... ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 788998886532 33457788888888888876655444444445555666666654
No 217
>PLN02317 arogenate dehydratase
Probab=91.44 E-value=0.95 Score=48.23 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=53.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC---------------CeEEEEEEEeCC--hHHHHHHHHHH
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE---------------GLSCITTVVPGT--DESIGKLVQLL 376 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~---------------~iSRiTIVv~gd--e~~ieQIvkQL 376 (472)
+..|.+.++|+||+|.++...|+.||+|+..|.--|.-.. .-..+-|=+++. +..+++.++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 5667777799999999999999999999999998886544 223444445554 66788888888
Q ss_pred hcccceEE
Q 012043 377 HKLIDLHE 384 (472)
Q Consensus 377 ~KLidVi~ 384 (472)
++.-.-++
T Consensus 363 ~~~~~~lr 370 (382)
T PLN02317 363 QEFATFLR 370 (382)
T ss_pred HHhcCeEE
Confidence 87655333
No 218
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.31 E-value=0.54 Score=39.24 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=39.2
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--------HHHHHHHHHhc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHK 378 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~--------~ieQIvkQL~K 378 (472)
..+.||++.+|...|++.|+||+-++.++ ..+.++++.++. .++++...|+|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 46789999999999999999999996522 668999996543 34455555544
No 219
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=91.29 E-value=0.68 Score=53.32 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=51.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC------hHHHHHHHHHHhccc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT------DESIGKLVQLLHKLI 380 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd------e~~ieQIvkQL~KLi 380 (472)
...|.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-+-..-.|.+.+ ++..++|.+.|.+.+
T Consensus 668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999988876555555554422 334666666665544
No 220
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.04 E-value=0.69 Score=35.04 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=39.7
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
.+.||++.++...+++.|+|++-++.+..+ -+++++++. ...+++.+-|++.
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~--~~~~~~~~~Lh~~ 63 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAE--DDGWAAVKAVHDE 63 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHH
Confidence 467999999999999999999999876643 557788874 3455556666554
No 221
>PRK03381 PII uridylyl-transferase; Provisional
Probab=90.87 E-value=0.63 Score=53.28 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=45.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C--hHHHHHHHHHHhcc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T--DESIGKLVQLLHKL 379 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-d--e~~ieQIvkQL~KL 379 (472)
..+.|+..|+||++++|+|+|++.|+||.+-.+-. .+..+- .++.|.+ + ....+++.+.|++.
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~l-d~F~V~~~~~~~~~~~~l~~~L~~~ 665 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAV-LEFVVSPRFGSPPDAALLRQDLRRA 665 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEE-EEEEEECCCCCcchHHHHHHHHHHH
Confidence 58999999999999999999999999999988864 444444 4444442 1 11235555565544
No 222
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=90.87 E-value=1.1 Score=48.63 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=54.0
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI 380 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~gd-e~~ieQIvkQL~KLi 380 (472)
+.+|.+.+.|+||.|.++..+|+.+|+|+..|.--|+.. +.-..+-|-++|. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 567888889999999999999999999999999888654 3334455556665 477899999998876
No 223
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.77 E-value=0.78 Score=53.34 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=51.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhccc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLI 380 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~KLi 380 (472)
..+.|...|+||+|.+|+|+|++.|+||.+-.+..+.+.-.--.-.|.+.+ ++.+++|.+.|.+.+
T Consensus 702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998888775555555554432 345666777766644
No 224
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.75 E-value=0.75 Score=34.94 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=39.1
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
+.+.||++.|+...+++.|.|++.++.+.++ -+++++++.+ ..++..+.|+|
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~--d~~~~~~~lh~ 62 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNE--DADKAVKAIYE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 3468999999999999999999999876643 5678888853 34444555544
No 225
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=90.73 E-value=0.26 Score=42.75 Aligned_cols=52 Identities=15% Similarity=0.308 Sum_probs=44.8
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd 365 (472)
+++..|++.=.|+||+.+.|++++++.|.||.- ++.|--.++-.|-+.|+-+
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCC
Confidence 468899999999999999999999999999975 5666667888888888865
No 226
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.49 E-value=0.73 Score=35.28 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=37.5
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
.+.||++.|+...+++.|.|++.++.+..+ ..+.++++.++ .+.+.+.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence 468999999999999999999999876633 45778887533 3444444443
No 227
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=90.48 E-value=1.2 Score=48.69 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=58.0
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--c-E-EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~-~-iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
.+-+|.+.+.|+||.|.++..+|+.+|+|+..|---++... . . +=|-++|+...+.++++.|.+..+.++|.
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 45567777799999999999999999999999988776543 2 3 44556788888999999999988876664
No 228
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=90.45 E-value=1.5 Score=32.64 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=36.8
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
..+.||++.|+.+.+++.|.|++.++.. +..++++++. ...+++.+-|+|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeH--HHHHHHHHHHHH
Confidence 4577999999999999999999999832 2457888874 334444555544
No 229
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=90.44 E-value=2.4 Score=42.25 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=60.8
Q ss_pred eEEEEEEEEeCchh--HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEE--EeC-ChHHHHHHHHHHhcccceEEEEe
Q 012043 313 RSHTLSMLVNNTPG--VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTV--VPG-TDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 313 ~~htLSilVeN~pG--VL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIV--v~g-de~~ieQIvkQL~KLidVi~V~d 387 (472)
..|.+++.+.+.++ ++.++...+...+|.+.++.+.+.++++-..|+.. ..+ ++..+++++.+|.....|.+|.=
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~W 220 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHW 220 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEEE
Confidence 35788888888664 69999999999999999999988766664445444 443 57789999999999999998863
No 230
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=90.23 E-value=4.7 Score=43.77 Aligned_cols=124 Identities=20% Similarity=0.300 Sum_probs=88.9
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHHhcCceeeEEEecCCchhh
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL~KLvdVikV~dlt~~~~V 157 (472)
+.-.....+++|++.||.+.+++.|+|++-+..+.++.. +++++++++ ...+.+.+....+.. .+ .+
T Consensus 311 ~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v-------~~ 379 (447)
T COG0527 311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EV-------EV 379 (447)
T ss_pred EEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eE-------Ee
Confidence 334444556679999999999999999999988877665 888887554 223333333332333 22 26
Q ss_pred hhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 158 ERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 158 ~RELaLIKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
++.+++|-+--. +.--.++++-...++-.|.-++...+.|-+.=+.+..+..++.|.
T Consensus 380 ~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH 441 (447)
T COG0527 380 EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH 441 (447)
T ss_pred eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence 778888887543 234568999999999999999977788888778888877777765
No 231
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=89.75 E-value=0.92 Score=52.56 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=51.5
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhcccc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLID 381 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~KLid 381 (472)
..+.|...|+||+|.+|+|.|++.|+||.+=.+..+.+.-+--.-.|.+.+ ++.+++|.+.|++.++
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~ 749 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALN 749 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999888777666555544554422 3456677777776554
No 232
>PLN02317 arogenate dehydratase
Probab=89.29 E-value=1.8 Score=46.20 Aligned_cols=66 Identities=14% Similarity=0.302 Sum_probs=49.4
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC----------------cE-EEEEEeCC--hhhHHHHHHHH
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSGT--ERVLRQVVEQL 139 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~----------------~~-iTIVV~gd--d~~ieQI~kQL 139 (472)
+-.|.+.++|+||.|.++...|+.||+|+..|---|.... .+ |=|-++|. +..+++.++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 4567777799999999999999999999999987775443 12 33445554 56678888888
Q ss_pred hcCce
Q 012043 140 NKLVN 144 (472)
Q Consensus 140 ~KLvd 144 (472)
.+.-.
T Consensus 363 ~~~~~ 367 (382)
T PLN02317 363 QEFAT 367 (382)
T ss_pred HHhcC
Confidence 77554
No 233
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.26 E-value=0.84 Score=36.26 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~ 377 (472)
|.||++++++..++.-|+||--++ | ...+.++|+. +.+++.++-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S----~~~~~ilV~~--~~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---S----EISISILVKE--EDLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---E----SSEEEEEEEG--GGHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---E----eeeEEEEEeH--HHHHHHHHHhc
Confidence 599999999999999999998877 3 3567788884 46666666655
No 234
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=89.20 E-value=1.4 Score=33.40 Aligned_cols=51 Identities=14% Similarity=0.293 Sum_probs=37.4
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~ 140 (472)
..+.||++.||...+++.|+|++.++.+..+ ..++++++.++ .++..+.|+
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh 61 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVH 61 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHH
Confidence 3578999999999999999999999875532 45888887433 344444444
No 235
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.06 E-value=1.2 Score=37.14 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=32.2
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd 129 (472)
..+.||++.+|-..|++.|+||+-++.++ .-++++++.++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd 50 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK 50 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence 46789999999999999999999997522 44777777544
No 236
>PLN02550 threonine dehydratase
Probab=88.82 E-value=8.3 Score=43.41 Aligned_cols=135 Identities=17% Similarity=0.286 Sum_probs=91.1
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
.+++.+.+..-++||.|.+++.++..+ ||-.+.--..... ..+.+.++ -+.+.+++|+..|++.= .++.|+++.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 356889999999999999999999987 9998877653222 23444443 24678999999998854 688888887
Q ss_pred hhhhh-------h------eeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----cC-----CEEEEEEeCChhHHHHHH
Q 012043 155 PHVER-------E------LMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----SE-----HALTIEVTGDPGKMVAVQ 210 (472)
Q Consensus 155 ~~V~R-------E------LaLIKV~~~~~~r~eI~~l~~~FrAk--IVDv----s~-----~sl~iE~TG~~~KIdafi 210 (472)
+...- | =+|+.|..+ +......+.++.++-+ |-.. +. =.+=||+. +++++.|+
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l~ 567 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEFK 567 (591)
T ss_pred hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHHH
Confidence 65421 1 135666654 5555777777777763 2211 10 11346775 47888888
Q ss_pred HHhccCCc
Q 012043 211 RNLSKFGI 218 (472)
Q Consensus 211 ~~L~~fGI 218 (472)
+.|+..|.
T Consensus 568 ~~l~~~gy 575 (591)
T PLN02550 568 SRANALGY 575 (591)
T ss_pred HHHHHcCC
Confidence 88887663
No 237
>PRK02047 hypothetical protein; Provisional
Probab=88.82 E-value=4.6 Score=34.72 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=64.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCce--eeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYN--IQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyN--IeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
..+.+.+...|.++..+.|..++.++... -++++.-++....+-.+|+.+. .++++++.|-+.|.+.-.|.-|
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v 90 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV 90 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 45899999999999999999999999555 6679999999999999999988 5788999999999998888544
No 238
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=88.69 E-value=1.2 Score=51.81 Aligned_cols=66 Identities=8% Similarity=0.236 Sum_probs=48.6
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE-e--C----ChhhHHHHHHHHhcCc
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV-S--G----TERVLRQVVEQLNKLV 143 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV-~--g----dd~~ieQI~kQL~KLv 143 (472)
..-.|.|.+.|+||+|.+|++.|++.|.||.+-.+..+.+.-.=++.| + | ++...++|.+.|.+.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999998773222223333 2 2 2345677777776544
No 239
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=88.68 E-value=0.47 Score=41.20 Aligned_cols=46 Identities=30% Similarity=0.490 Sum_probs=38.3
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEE
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIV 124 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIV 124 (472)
+++..|++.=.|+||+.+.|++++++.|.||.-++ .|--.+++|+.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~ 46 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMI 46 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceee
Confidence 46889999999999999999999999999998554 66556665554
No 240
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=88.53 E-value=1 Score=39.80 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~----iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
+-|.+|..|..+-...|..+.+++.++....+ + ++|.+.|+-..+-+.+++|+++-.++.|++++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 45899999999999999999999999655443 2 78889999999999999999999999999876
No 241
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=88.45 E-value=1.1 Score=35.69 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd 365 (472)
..|.||+++++.+.++++|.||+-++.. .+ .++++++.+
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~~ 47 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDGE 47 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEchh
Confidence 3578999999999999999999999555 22 377888853
No 242
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.39 E-value=1.6 Score=33.08 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=37.5
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
.+.||++.++...+++.|.|++-++.+..+ ..++++++.+ ..+++.+.|++
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~ 62 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence 467999999999999999999999876533 4477777643 34445555544
No 243
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.23 E-value=4.8 Score=42.81 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=76.4
Q ss_pred chHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc---CceeeEEEecCCchhhhhheeeEEE
Q 012043 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL 166 (472)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K---LvdVikV~dlt~~~~V~RELaLIKV 166 (472)
||+++||...|++.|+||+.++.+.++ .-++++++.++ .+...+.|.+ ...+..+. +.+.+++|.|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv 383 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL 383 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence 899999999999999999999744332 23777776433 4444444433 23333333 5678899998
Q ss_pred eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 167 ~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
... +.--.++++.....+-.|.-++.....|-++=+.+..+..++.|..
T Consensus 384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~ 437 (441)
T TIGR00657 384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN 437 (441)
T ss_pred EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence 432 3445688888888888888775444445555555666666766653
No 244
>PRK08639 threonine dehydratase; Validated
Probab=88.16 E-value=3.6 Score=43.66 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=62.1
Q ss_pred eEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtg-LFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
+...+++.+-++||-|.++.. +++.++ ||-.+.--.....+..++.++++. +.+.++++..+|++.= .++.++++
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 411 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP 411 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence 567999999999999999999 555555 999987654445566688888884 4578999999999864 45667777
Q ss_pred chHHHH
Q 012043 391 LPFAER 396 (472)
Q Consensus 391 ~~~V~R 396 (472)
.+.++.
T Consensus 412 ~~~~~~ 417 (420)
T PRK08639 412 NEPLYN 417 (420)
T ss_pred CHHHHH
Confidence 766553
No 245
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.91 E-value=1.9 Score=32.67 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=33.2
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd 128 (472)
+.+.||++.|+...+++.|.|++.++.+.++ ..+++++..+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~ 51 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNE 51 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHH
Confidence 3468999999999999999999999876533 4577888753
No 246
>PRK09034 aspartate kinase; Reviewed
Probab=87.82 E-value=8.2 Score=41.62 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=73.9
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--hH-HHHHHHHhcCceeeEEEecCCchhhhhheeeE
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELMLI 164 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--~i-eQI~kQL~KLvdVikV~dlt~~~~V~RELaLI 164 (472)
.+||+++||.+.|++.|.||+.++ ....-++++++.++. .. ..+.+.|++-..+..|. +.+.+++|
T Consensus 320 ~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~-------~~~~va~V 388 (454)
T PRK09034 320 REVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELE-------IEHDLAII 388 (454)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEE-------EeCCEEEE
Confidence 379999999999999999999983 222347888875442 11 45566665544433333 66789999
Q ss_pred EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 012043 165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
.+--. +..-..+++.....+..|.-++ .....|-++=+.+..+..++.|.
T Consensus 389 sivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH 445 (454)
T PRK09034 389 MVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY 445 (454)
T ss_pred EEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence 98432 2345578888888888885553 22233444444444555555554
No 247
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=87.72 E-value=1.5 Score=32.19 Aligned_cols=53 Identities=30% Similarity=0.444 Sum_probs=39.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
..+++|++.++...|++.+.|+..++.+..+ .+++++++. ...+.+.+.|+|.
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~--~~~~~~~~~l~~~ 62 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDE--DDADKAVKALHEE 62 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeH--HHHHHHHHHHHHH
Confidence 4478999999999999999999998776522 557777774 4456666666654
No 248
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=87.52 E-value=4.5 Score=42.95 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=63.8
Q ss_pred eEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtg-LFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
+...+++.+-++||-|.++.. +++.++ ||-.+.-......+..++.+.++. +.+.+++|.+.|++.= .++.++++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 400 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE 400 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence 468999999999999999999 555555 999777665556678889988884 4578899999998864 46667887
Q ss_pred chHHHH
Q 012043 391 LPFAER 396 (472)
Q Consensus 391 ~~~V~R 396 (472)
.+.++.
T Consensus 401 ~~~~~~ 406 (409)
T TIGR02079 401 NDILYN 406 (409)
T ss_pred CHHHHH
Confidence 766654
No 249
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=87.39 E-value=4.8 Score=40.23 Aligned_cols=73 Identities=10% Similarity=0.156 Sum_probs=58.8
Q ss_pred ceEEEEEEEEcCcch--HHHHHHHHHhccCceeeeEeeeecCCCc--EEE--EEEeC-ChhhHHHHHHHHhcCceeeEEE
Q 012043 77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFT--IVVSG-TERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 77 ~~~htISIlVeN~pG--VL~RIagLFsRRGyNIeSLtVg~Ted~~--~iT--IVV~g-dd~~ieQI~kQL~KLvdVikV~ 149 (472)
...|.+++.+.++++ +..++...+...+|.+.++.+.+.++++ .++ +..++ ++..+++++.+|.....|.+|.
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 346788988888665 6999999999999999999998765554 344 44443 5788999999999999999886
No 250
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.32 E-value=2.7 Score=31.25 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=37.1
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
..+.||++.++...+++.|.|++.++.. + .+++++++. ...+++.+-|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~--~~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeH--HHHHHHHHHHHH
Confidence 4577999999999999999999999842 1 557788874 344555555554
No 251
>PRK08526 threonine dehydratase; Provisional
Probab=86.63 E-value=3.1 Score=44.18 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=56.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHHHHHHHHHhcc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL 379 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te---~~~iSRiTIVv~-gde~~ieQIvkQL~KL 379 (472)
+.+.+.+.+.++||-|.++..++++.|-||-.+.-.... ..+-.+++++++ -+.+.+++|...|++.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 568999999999999999999999999999998885533 347788888888 4667899999988653
No 252
>PRK04374 PII uridylyl-transferase; Provisional
Probab=86.32 E-value=2.2 Score=49.77 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=48.2
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC---hHHHHHHHHHHhcc
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKL 379 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd---e~~ieQIvkQL~KL 379 (472)
..+.|+..|+||++++|+|+|++.|+||-+-.+-.+.+.-.--.-.|.+.+ ++..+++.+.|++.
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~ 758 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQV 758 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Confidence 478999999999999999999999999999888777665554444444422 23455566665553
No 253
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=86.08 E-value=2.3 Score=31.17 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=36.9
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
..+++|++.++...|++.|.|+..++.+.. ...++++++. ...+.+.+.|+|
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~ 61 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHE 61 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHH
Confidence 447899999999999999999998876542 2336677764 334445555544
No 254
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.76 E-value=2.2 Score=35.85 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=48.3
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC---hHHHHHHHHHHhcccceEEE
Q 012043 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 320 lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd---e~~ieQIvkQL~KLidVi~V 385 (472)
+.+++.|.+.|+..+|.+.|.++|-+. .|+-.|+++++.+ ++.+++|++.|++-.+.-.+
T Consensus 10 ~Mn~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 10 LMNREVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred hccchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999999863 3566699999976 55888888998886555443
No 255
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=85.59 E-value=2.2 Score=49.54 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=45.7
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhc
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK 378 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL~K 378 (472)
..+|.|...|+||+|.+|+.+|++-|+||.+--+..-.+ .+-.+-.|.+.+ +...+.|.+.|.+
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ge-rv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~ 851 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLLS 851 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCc-eEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence 578999999999999999999999999999977765544 344444444321 2233666665543
No 256
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=85.55 E-value=1.9 Score=44.21 Aligned_cols=180 Identities=16% Similarity=0.160 Sum_probs=104.5
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEe--CChhhHHHHHHHHhcCceeeEEE--
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVS--GTERVLRQVVEQLNKLVNVIKVE-- 149 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~--gdd~~ieQI~kQL~KLvdVikV~-- 149 (472)
++..+|.+-..|+||..++|++...++|.||.....- +.. .++ |.+... +.....+++...+..+.+=....
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~ 83 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR 83 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence 3678999999999999999999999999999987765 322 344 555554 33345666766666554411111
Q ss_pred ------------ecCCchhhhhheee--------EEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHH
Q 012043 150 ------------DISNEPHVERELML--------IKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209 (472)
Q Consensus 150 ------------dlt~~~~V~RELaL--------IKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdaf 209 (472)
-.+.+.+--.+|+. +.|.+=-.+-.+...+++.|+--.-.+.-+.-+ .++.=+..
T Consensus 84 ~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~~ 158 (287)
T COG0788 84 LHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEARL 158 (287)
T ss_pred EeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHHH
Confidence 11122222222210 111111145667888888888765555432211 46677788
Q ss_pred HHHhccCCcEEEeeccceeeecCcCCCCcccc-ccc-------ccCCchhhhhcccccccccccccc
Q 012043 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFW-NFS-------AASYPDLEEKKRTGIFIPETNQSL 268 (472)
Q Consensus 210 i~~L~~fGIlEvaRTG~iAl~Rg~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 268 (472)
+++++.||+ -.+-|+|=...++..+- ++. -.--|.+..+.|-.-...++++-.
T Consensus 159 ~~ll~~~~~------DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlI 219 (287)
T COG0788 159 LELLEEYGA------DLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLI 219 (287)
T ss_pred HHHHHHhCC------CEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEe
Confidence 999999992 23457777666665441 111 112456655554444455555533
No 257
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.48 E-value=3 Score=32.72 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=40.0
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
+.||++.|+...|++.|+||.-++-|.++. +++++++. +..+++++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~--~~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVND--SEAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeH--HHHHHHHHHHHH
Confidence 468999999999999999999999888753 58888885 455666666654
No 258
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=85.46 E-value=3 Score=33.60 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=42.6
Q ss_pred eEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 012043 163 LIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI 218 (472)
Q Consensus 163 LIKV~~~--~~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI 218 (472)
++|+... ....+-|-++++.|+..+ ||- .-.++++|+.|++++++++++.|+..|+
T Consensus 4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 5566543 456778999999998655 333 4467999999999999999999999995
No 259
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=85.46 E-value=2.6 Score=33.46 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~ 140 (472)
|.||+++|++..++..|+||--++ |+. -+.+.|+. +.+++.++-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~--~~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKE--EDLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEG--GGHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeH--HHHHHHHHHhc
Confidence 599999999999999999998887 332 35666763 34556555554
No 260
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=85.29 E-value=3.4 Score=29.52 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=35.0
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHH
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ 138 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQ 138 (472)
+.||.+.|+...+++.|+||+.++.+.. ...++++++.+ ..+++.+-
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~~ 58 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVKA 58 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHHH
Confidence 4799999999999999999999987764 23477777642 34444443
No 261
>PRK09084 aspartate kinase III; Validated
Probab=84.74 E-value=18 Score=39.06 Aligned_cols=113 Identities=15% Similarity=0.292 Sum_probs=75.7
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-------hHHHHHHHHhcCceeeEEEecCCchhhhhh
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~-------~ieQI~kQL~KLvdVikV~dlt~~~~V~RE 160 (472)
++||+++||...|++.|+||+-++.++ .-++++++.++. ..+.+.+.|+++-. + .+.+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~ 383 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG 383 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence 689999999999999999999998432 347888875542 23455556654211 1 25678
Q ss_pred eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 161 LaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
+++|.|--.. .--+.++......+-.++..+.....|-+.=+.+..+..++.|.
T Consensus 384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH 442 (448)
T PRK09084 384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH 442 (448)
T ss_pred eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence 9999996543 22335555555556777777677666666666666666666654
No 262
>PRK09224 threonine dehydratase; Reviewed
Probab=84.61 E-value=28 Score=38.17 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=55.7
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEE--EeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIV--V~gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
++..+++..-++||-|.+++.+++ +-||..+.--.... ...+.+. +.+.++.+++|++.|++.= .++.++++.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~n 402 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSDD 402 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCCC
Confidence 578999999999999999999999 68998887655322 2334444 4444555899999997744 577788776
Q ss_pred hh
Q 012043 155 PH 156 (472)
Q Consensus 155 ~~ 156 (472)
+.
T Consensus 403 e~ 404 (504)
T PRK09224 403 EL 404 (504)
T ss_pred HH
Confidence 53
No 263
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.25 E-value=6.4 Score=29.22 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=35.6
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
..+.||++.|+...+++.|.|++.++.. ...++++++.+ ..+++.+-|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDED--DAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeHH--HHHHHHHHHHH
Confidence 4577999999999999999999999842 24477888642 33444444443
No 264
>PRK06291 aspartate kinase; Provisional
Probab=84.18 E-value=8.6 Score=41.47 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=76.6
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEe
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~ 167 (472)
+.||+++|+...|++.|+||+-++.+.++ .-++++++.++ .++..+.|++...=. ....=.+.+++++|.|-
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isvv 404 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEG----LVRDVTFDKDVCVVAVV 404 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHh----cCcceEEeCCEEEEEEE
Confidence 78999999999999999999999866433 23777776432 344444444422100 01112356788999886
Q ss_pred CCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 012043 168 GDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 168 ~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-.. .--..++......+.+|.-++ ....-|-+.=+.+..+..++.|..
T Consensus 405 G~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~ 459 (465)
T PRK06291 405 GAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD 459 (465)
T ss_pred cCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence 543 234467777777788886555 444555555566667777776653
No 265
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=84.00 E-value=2.5 Score=44.13 Aligned_cols=106 Identities=13% Similarity=0.185 Sum_probs=70.8
Q ss_pred EEEEEE---EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 315 HTLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 315 htLSil---VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
..+++. +.|+||++.|+...|.+.|+||+.++.+.++ ..++++++. +..+++.+.|++...-.... .
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~ 330 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVDE--TDADEAVRALKDQSGAAGLD----R 330 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----e
Confidence 356666 7899999999999999999999999887654 347788863 34666666666643211111 1
Q ss_pred hHHHHhhheeEEecCcc-c----HHHHHHHHHHhCcEEEEecCC
Q 012043 392 PFAERELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDH 430 (472)
Q Consensus 392 ~~V~REL~LiKV~~~~~-~----r~eI~~ia~iFrakIVDvs~~ 430 (472)
-.+.+.+++|-|-...- + -..+++.....+.+|.-++..
T Consensus 331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s 374 (401)
T TIGR00656 331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS 374 (401)
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 12556778777754331 1 246777777777777766643
No 266
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.75 E-value=3.8 Score=32.14 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=37.5
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
+.||++.|+...|++.|+||.-++.|.++. .++++++.+ ..++.++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~--~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDS--EAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHH--HHHHHHHHHHH
Confidence 468999999999999999999999877632 488888753 34444454443
No 267
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=83.28 E-value=3.7 Score=32.72 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=30.3
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g 127 (472)
..|.||++++|.+.++++|.||+-++.. .+ -+++++..
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence 3578999999999999999999999554 22 36677764
No 268
>PRK00907 hypothetical protein; Provisional
Probab=83.14 E-value=9.2 Score=33.22 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=63.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCc--eeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGY--NIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgy--NIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~ 384 (472)
..+.|.|.-.+++++...|..++.+.+- +-.++++-++....+-.+|+.+. .+.++++.|=+.|.+.-.|.-
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkm 90 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKW 90 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 4589999999999999999999998865 56788889999999999999988 567889999999999888853
No 269
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=83.13 E-value=4.5 Score=32.15 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=33.4
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd 365 (472)
..+.||++.++...|++.|.|++.++.+..+ .+++++++.+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~~ 51 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDES 51 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeHH
Confidence 4578999999999999999999999887443 2677888743
No 270
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=82.96 E-value=3.7 Score=29.36 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL 376 (472)
+.||.+.++...+++.|+||+.++.+.. + .+++++++. +..+++.+-|
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~--~~~~~~~~~l 59 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDE--SDLEKAVKAL 59 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeH--HHHHHHHHHh
Confidence 4799999999999999999999988764 2 457777774 3455554443
No 271
>PRK06635 aspartate kinase; Reviewed
Probab=82.86 E-value=3.9 Score=42.71 Aligned_cols=98 Identities=17% Similarity=0.297 Sum_probs=66.5
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEEecCCchHHHHh
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITHLPFAERE 397 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL---idVi~V~dlt~~~~V~RE 397 (472)
..|+||+|.|+...|.+.|+||+.++.+.++ ++...++++++. +..++..+.|+++ +.+..+ .+.+.
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~-~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~ 339 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSE-DGKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDD 339 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCC-CCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence 6789999999999999999999998777543 235567788864 3455666666664 222222 23456
Q ss_pred hheeEEecC-----cccHHHHHHHHHHhCcEEEEec
Q 012043 398 LILIKIAVN-----TAARRDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 398 L~LiKV~~~-----~~~r~eI~~ia~iFrakIVDvs 428 (472)
++++.|... +..-.++++....++..|.-++
T Consensus 340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 777877432 1223577777777888887664
No 272
>PRK14434 acylphosphatase; Provisional
Probab=82.03 E-value=3.4 Score=35.49 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr---AkIVDvs~~sl~iE~TG~~-~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|-...+.++.|++.|++ ++++.|++.|+.
T Consensus 16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 35889999999999 9999999999999999997 699999999975
No 273
>PRK12483 threonine dehydratase; Reviewed
Probab=81.74 E-value=8.8 Score=42.45 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=76.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHH-HHHHHHHhcccceEEEEecCC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESI-GKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~i-eQIvkQL~KLidVi~V~dlt~ 390 (472)
+++.+++...++||-|.+++.+++.+ ||..+.--.. ..+-..+.+.++. +.+.. ++|++.|++.= .++.++++
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd 418 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA-DAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD 418 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec-CCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence 56899999999999999999999988 9998877653 3344778887773 33455 99999997743 57788888
Q ss_pred chHH---------------HHhhheeEEecCcccHHHHHHHHHHhCc
Q 012043 391 LPFA---------------ERELILIKIAVNTAARRDVLDIAKIFRA 422 (472)
Q Consensus 391 ~~~V---------------~REL~LiKV~~~~~~r~eI~~ia~iFra 422 (472)
.+.. .|| +|+.|..+ +.....++.++.++-
T Consensus 419 ne~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~ 463 (521)
T PRK12483 419 DELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGP 463 (521)
T ss_pred CHHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCC
Confidence 7664 344 46667664 566677777777654
No 274
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=81.74 E-value=8.8 Score=42.08 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=62.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
+.+.+++..-++||-|.++..+++.+ ||..++--. ...+..++.+.+. .+.+.+++|+++|++. =.++.|+++.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~-~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~n 398 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY-ADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDD 398 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe-cCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCC
Confidence 47899999999999999999999984 999888765 3456678888887 3568899999999874 3677888876
Q ss_pred hHH
Q 012043 392 PFA 394 (472)
Q Consensus 392 ~~V 394 (472)
+..
T Consensus 399 e~~ 401 (499)
T TIGR01124 399 ELA 401 (499)
T ss_pred HHH
Confidence 544
No 275
>PLN02551 aspartokinase
Probab=81.72 E-value=21 Score=39.52 Aligned_cols=114 Identities=17% Similarity=0.279 Sum_probs=73.2
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--------hHHHHHHHHhcCceeeEEEecCCchhhhh
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVER 159 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--------~ieQI~kQL~KLvdVikV~dlt~~~~V~R 159 (472)
++||+++||.+.|.+.|+||+-++.+ + .-++++++.++. .++++...|+++ ..| .+.+
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~~ 443 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLLQ 443 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEeC
Confidence 68999999999999999999999643 2 347888876542 233333444432 122 2567
Q ss_pred heeeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 012043 160 ELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 160 ELaLIKV~~~~~~----r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++++|-|--.-.. -..++......+.+|.-++ ...+-|-+.=+.+..+..++.|..
T Consensus 444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~ 505 (521)
T PLN02551 444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505 (521)
T ss_pred CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence 8888888644212 2356666677777885444 455555555566666666666654
No 276
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=81.63 E-value=5.3 Score=31.03 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=34.6
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
.+.||++.|+...+++.|+|+...+- .+-.+.++++.+ ..+++++.|++
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh~ 60 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALHE 60 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHHH
Confidence 47899999999999999999974442 223488888743 34455555544
No 277
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=81.49 E-value=4.9 Score=31.83 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 324 ~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
+||++.|+...+++.|+|+..++-|+++ -+++++++. +..++.++.|++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~----~~is~~V~~--~~~~~av~~Lh~ 62 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDR--DDYDNAIKALHA 62 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe----eEEEEEEEH--HHHHHHHHHHHH
Confidence 7999999999999999999999888764 357788873 566666666654
No 278
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=80.62 E-value=25 Score=40.95 Aligned_cols=116 Identities=13% Similarity=0.220 Sum_probs=77.7
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHHhcCceeeEEEecCCchhhhhh
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL~KLvdVikV~dlt~~~~V~RE 160 (472)
+.++||+++||.+.|++.|+||+-++.+ +.-++++++..+ +.++.+.++|.++-.| . +.+.
T Consensus 332 ~~~~~g~~a~if~~la~~~I~Vd~I~ss----e~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i---~-------~~~~ 397 (861)
T PRK08961 332 MWQQVGFLADVFTLFKKHGLSVDLISSS----ETNVTVSLDPSENLVNTDVLAALSADLSQICRV---K-------IIVP 397 (861)
T ss_pred ccccccHHHHHHHHHHHcCCeEEEEEcC----CCEEEEEEccccccchHHHHHHHHHHHhhcCcE---E-------EeCC
Confidence 3478999999999999999999988632 234777777543 4566777777653222 1 3456
Q ss_pred eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
+++|-|--.. ..-..++......+..++..+...+-|-+.=+.+..+..++.|..
T Consensus 398 va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~ 457 (861)
T PRK08961 398 CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLHA 457 (861)
T ss_pred eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHHH
Confidence 7888885432 233466666666778888888776666665566666666666553
No 279
>PRK04998 hypothetical protein; Provisional
Probab=80.43 E-value=14 Score=31.41 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=60.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~ 384 (472)
..+.+.+...+.++.++.|..+|.+..-.-+.++.-++....+-.+|+.+. .++++++.|-+.|.+.-.|.-
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~m 86 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRM 86 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEE
Confidence 458999999999999999999997764333457788888999999999988 578899999999999888853
No 280
>PLN02550 threonine dehydratase
Probab=80.21 E-value=9.8 Score=42.88 Aligned_cols=104 Identities=12% Similarity=0.182 Sum_probs=77.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
+++.+.+.+-++||-|.+++.++..+ ||-.+.--. ...+-..+.+.++ -+.+.+++|+..|++.= .++.|+++.
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 46889999999999999999999987 999888777 4456677777777 46788999999998854 588899987
Q ss_pred hHHHH-------hh------heeEEecCcccHHHHHHHHHHhCc
Q 012043 392 PFAER-------EL------ILIKIAVNTAARRDVLDIAKIFRA 422 (472)
Q Consensus 392 ~~V~R-------EL------~LiKV~~~~~~r~eI~~ia~iFra 422 (472)
+...- |- +|+.|..+ +....+++.++.++-
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~ 533 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSP 533 (591)
T ss_pred hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCC
Confidence 76522 21 24555443 444566666666554
No 281
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=79.68 E-value=4.3 Score=31.58 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=36.6
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
.+.||++.|+...+++.|+|+..++- .-.++.++++. +..+++++.|++-
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~------Se~~is~~v~~--~~~~~av~~Lh~~ 61 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD------SHTTISCLVSE--DDVKEAVNALHEA 61 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc------CccEEEEEEcH--HHHHHHHHHHHHH
Confidence 47899999999999999999974442 12367788874 4566666666653
No 282
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.60 E-value=5.1 Score=33.70 Aligned_cols=60 Identities=10% Similarity=0.330 Sum_probs=45.2
Q ss_pred EEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC---hhhHHHHHHHHhcCceeeEE
Q 012043 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd---d~~ieQI~kQL~KLvdVikV 148 (472)
+..++.|.+.|+..+|.+.|.++|-+.-| ..+ |+|+++.+ +..+++|++.|.+-.+.=.+
T Consensus 10 ~Mn~evGF~rk~L~I~E~~~is~Eh~PSG---ID~-~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 10 LMNREVGFGRKLLSILEDNGISYEHMPSG---IDD-ISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred hccchhcHHHHHHHHHHHcCCCEeeecCC---Ccc-EEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 35788999999999999999999976533 222 89999876 44777788888775554333
No 283
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=79.49 E-value=13 Score=36.82 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=54.4
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEE
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~ 386 (472)
+.+.+..++. -+..+...|.+.++.+.++.....+++..-.+++.++. +...+++..+|.++-+|.+|+
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLHA-TTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEECC-CCCHHHHHHHHhcCCCceEEE
Confidence 5555555444 36888899999999999999887777776667777774 567889999999999999885
No 284
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.19 E-value=5.1 Score=46.59 Aligned_cols=51 Identities=22% Similarity=0.411 Sum_probs=40.6
Q ss_pred cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEE
Q 012043 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIV 124 (472)
Q Consensus 74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIV 124 (472)
...-++.++.+...|+||.|++++++|+.-|.+|.|..+..-...- .+.++
T Consensus 786 t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt 838 (867)
T COG2844 786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838 (867)
T ss_pred ccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence 3344688999999999999999999999999999998876544432 34444
No 285
>PRK09181 aspartate kinase; Validated
Probab=78.93 E-value=28 Score=38.09 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=73.4
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEe
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~ 167 (472)
++||++.||.+.|.+.|+||+.++.++ .-++++++.+...++++.+.|++...--++. + +++++|-|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~----~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-------~-~~~a~VsvV 408 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNA----NTITHYLWGSLKTLKRVIAELEKRYPNAEVT-------V-RKVAIVSAI 408 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecC----cEEEEEEcCChHHHHHHHHHHHHhcCCceEE-------E-CCceEEEEe
Confidence 679999999999999999999765432 3477777765344677777777644322221 2 678888886
Q ss_pred CCCCCH----HHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHhc
Q 012043 168 GDTSTW----PEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 168 ~~~~~r----~eI~~l~~~FrAkIVDvs~~--sl~iE~TG~~~KIdafi~~L~ 214 (472)
-..-.+ ..++......+-+|.-++.. .+-|-+.=+.+..+..++.|.
T Consensus 409 G~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH 461 (475)
T PRK09181 409 GSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALH 461 (475)
T ss_pred CCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 543322 36666677778888555544 344444444445554454443
No 286
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=78.68 E-value=6.8 Score=34.53 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEE--EEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSC--ITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSR--iTIVv~gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
+-|.+|..|..+-...|..+.+++.++.. .+.+.+ ++|.+.|+-..+-+.+++|+++-.++.|.+++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 45899999999999999999999998644 456665 45567799999999999999999999999886
No 287
>PRK08639 threonine dehydratase; Validated
Probab=78.52 E-value=14 Score=39.24 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=55.6
Q ss_pred eEEEEEEEEcCcchHHHHHHH-HHhccCceeeeEeeeecCCC--cEEEEEEeC-ChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 78 KRHTISVFVGDESGIINRIAG-VFARRGYNIESLAVGLNVDK--ALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIag-LFsRRGyNIeSLtVg~Ted~--~~iTIVV~g-dd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
+...+++..-++||-|.+++. +++.++ ||..+.--..... +.+.++++. +.+.++++..+|++.= .+++++++
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 411 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP 411 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence 567899999999999999999 555555 9998865432222 335555553 3457899999998854 46666777
Q ss_pred chhhhh
Q 012043 154 EPHVER 159 (472)
Q Consensus 154 ~~~V~R 159 (472)
.+.++.
T Consensus 412 ~~~~~~ 417 (420)
T PRK08639 412 NEPLYN 417 (420)
T ss_pred CHHHHH
Confidence 666543
No 288
>PRK08526 threonine dehydratase; Provisional
Probab=78.36 E-value=9.7 Score=40.53 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=50.6
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC---c--EEEEEEe-CChhhHHHHHHHHhcC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---A--LFTIVVS-GTERVLRQVVEQLNKL 142 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~---~--~iTIVV~-gdd~~ieQI~kQL~KL 142 (472)
+.+.+.+.+.|+||-|.+++.++++.|-||-.+.-...... + .++++++ -+.+.+++|...|.+.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999999999887543222 2 3566665 2456788888888553
No 289
>PRK14426 acylphosphatase; Provisional
Probab=78.10 E-value=5.9 Score=33.84 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|..+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 46889999999887 6677778889999999999999999999975
No 290
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=76.10 E-value=18 Score=38.54 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=55.5
Q ss_pred eEEEEEEEEcCcchHHHHHHH-HHhccCceeeeEeeeecCCC--cEEEEEEeC-ChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 78 KRHTISVFVGDESGIINRIAG-VFARRGYNIESLAVGLNVDK--ALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIag-LFsRRGyNIeSLtVg~Ted~--~~iTIVV~g-dd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
+...+++..-++||-|.+++. +++.++ ||-.+.--..... +.+.+.++. +.+.++++.+.|++.= .+++++++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 400 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE 400 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence 467999999999999999999 555544 9997775543222 345555542 3467889999998864 46667777
Q ss_pred chhhhh
Q 012043 154 EPHVER 159 (472)
Q Consensus 154 ~~~V~R 159 (472)
.+.++.
T Consensus 401 ~~~~~~ 406 (409)
T TIGR02079 401 NDILYN 406 (409)
T ss_pred CHHHHH
Confidence 665554
No 291
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=75.77 E-value=39 Score=39.51 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEe
Q 012043 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (472)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~ 167 (472)
+.||++.||.+.|.+.|+|++-++.+.++. -+.+++.. ...+.+.+.|+++-.. ..=.+++++++|-|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~--~~~~~~~~~l~~~~~~-------~~i~v~~~~a~VsvV 397 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTS--EVADSALKLLDDAALP-------GELKLREGLALVALV 397 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeH--HHHHHHHHHHHhhcCC-------CcEEEeCCeEEEEEe
Confidence 668999999999999999999998663322 35555542 2456666767665211 222367899999986
Q ss_pred CCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 168 GDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 168 ~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-.. .--..++......+-+++..+...+-|-+.=+.+..+..++.|..
T Consensus 398 G~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH~ 450 (810)
T PRK09466 398 GAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450 (810)
T ss_pred CCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHHH
Confidence 543 223477777788899999999888888777777777777776665
No 292
>PRK14429 acylphosphatase; Provisional
Probab=75.35 E-value=8.2 Score=32.82 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-..++.++.|++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 35888999999887 6778888889999999999999999999984
No 293
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=75.32 E-value=10 Score=30.13 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=31.7
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g 127 (472)
..+.+|++.++...|++.|.|++.++.+..+ ..+++++..
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeH
Confidence 4578999999999999999999999877332 246667764
No 294
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=74.80 E-value=11 Score=29.89 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (472)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~ 140 (472)
+||++.|+...+++.|+|+..++.|.++ -.++++|+. +..++.++.|+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~Lh 61 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKALH 61 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHHH
Confidence 7999999999999999999988877652 247777763 33444444444
No 295
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=74.28 E-value=13 Score=31.28 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=37.3
Q ss_pred EEEEEEEcCcchHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-----hhhHHHHHHHH
Q 012043 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (472)
Q Consensus 80 htISIlVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gd-----d~~ieQI~kQL 139 (472)
+...|.|..+||||. -|.+-..+.||+ |.++.+|. ++++.++++ .+.++++.++|
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-----~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-----YIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-----EEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-----EEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 357889999999985 577788899999 99998875 578888876 34445555544
No 296
>PRK09224 threonine dehydratase; Reviewed
Probab=74.22 E-value=22 Score=38.97 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhcccceEEEEecCC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd--e~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
++..+++.+-++||-|.++..+++ +-||..++--. ...+..++.+.++-. +..+++|.+.|++.= .++.|+++
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~-~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ 401 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRY-ADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD 401 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEe-cCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence 468999999999999999999999 68999887766 345667787777733 344999999998754 57788888
Q ss_pred chHHHH--------------hhheeEEecCcccHHHHHHHHHHhC
Q 012043 391 LPFAER--------------ELILIKIAVNTAARRDVLDIAKIFR 421 (472)
Q Consensus 391 ~~~V~R--------------EL~LiKV~~~~~~r~eI~~ia~iFr 421 (472)
.+.... .-.++.|..+ +.-..+.+.++..+
T Consensus 402 ne~~k~h~r~~~g~~~~~~~~e~~~~~~fP-erpGal~~Fl~~l~ 445 (504)
T PRK09224 402 DELAKLHVRYMVGGRPPKPLDERLYRFEFP-ERPGALLKFLSTLG 445 (504)
T ss_pred CHHHHHHHHhccCCCCCCCCceEEEEEeCC-CCCCHHHHHHHhcC
Confidence 765432 1236666654 22245666665544
No 297
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=73.87 E-value=22 Score=35.18 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=51.3
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEE--EEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~i--TIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
.+.+.+..++. -+..+...|.+.++.|.++.....+++..+ ++.+. .+...+++..+|.++.+|.+|+
T Consensus 144 ~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 144 HYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred cEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 35566665544 368888999999999999998766655544 44455 4567889999999999998885
No 298
>PRK08210 aspartate kinase I; Reviewed
Probab=73.82 E-value=8.8 Score=40.31 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=62.9
Q ss_pred EEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchHH
Q 012043 316 TLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (472)
Q Consensus 316 tLSilVeN~-pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~V 394 (472)
.|++.-.|. ||.++||.+.|.+.|+||+.++.... .+++++.. ...+++.+.|+++- + .-.+
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~ 335 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLG-------L--KPSV 335 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEE
Confidence 455554454 99999999999999999999977731 36677763 34566666666631 0 2235
Q ss_pred HHhhheeEEecCcc-----cHHHHHHHHHHhCcEEEEec
Q 012043 395 ERELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 395 ~REL~LiKV~~~~~-----~r~eI~~ia~iFrakIVDvs 428 (472)
.+.+++|.|-...- .-..+++.....+-+|+..+
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~ 374 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA 374 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe
Confidence 66788887765322 22456666666666776544
No 299
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=73.03 E-value=7.3 Score=32.64 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~F--rAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..+ .+.|-...++++.+++.|++++++.|++.|+.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 3588899999988 56788889999999999999999999999986
No 300
>PRK00341 hypothetical protein; Provisional
Probab=72.95 E-value=26 Score=30.16 Aligned_cols=70 Identities=9% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCcee--eeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNI--QSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNI--eSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~ 384 (472)
.+.+.|.-.+.+++.+.|..++.|.. .. +++++-++....+-.+|+.+. .++++++.|-+.|.+.-.|.-
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~m 89 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVHM 89 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 48999999999999999999998664 54 567778899999999999988 578899999999999888853
No 301
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=72.92 E-value=21 Score=39.14 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=73.9
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt~~~ 155 (472)
++..+++..-++||.|.+++.+++.+ ||..+.--..... ..+.+.++ .+.+.+++|+++|++. =.++.|+++.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~ne 399 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDDE 399 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCCH
Confidence 57899999999999999999999974 9988877653322 23444444 2467899999999874 36677777644
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEE-EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKV-VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkI-VDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
... ...=.-| +++- ....+.-+-+|.--.|+-+..|++.|.|
T Consensus 400 ~~k-~h~r~~~-----------------g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~ 442 (499)
T TIGR01124 400 LAK-LHVRYMV-----------------GGRPPHVENERLYSFEFPERPGALLRFLNTLQG 442 (499)
T ss_pred HHH-HHHHhcc-----------------CCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC
Confidence 221 1000000 1111 0112344566776777777777777765
No 302
>PRK14420 acylphosphatase; Provisional
Probab=72.77 E-value=9.1 Score=32.43 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 16 GFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 45888899998877 5677778888999999999999999999985
No 303
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=72.68 E-value=14 Score=40.09 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=70.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HH-HHHHHHHHhcccceEEEEecCCch
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ES-IGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-~~-ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
++-.....+++|++.||.+.+++.|+|++-+..+.++.. |++++++++ .. .+.+.+....+.. +-
T Consensus 311 ~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~----i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v 377 (447)
T COG0527 311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS----ISFTVPESDAPRALRALLEEKLELLA---------EV 377 (447)
T ss_pred EEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe----EEEEEchhhHHHHHHHHHHHHhhhcc---------eE
Confidence 444445556679999999999999999999998887765 999998654 22 2222232222332 12
Q ss_pred HHHHhhheeEEecCc-----ccHHHHHHHHHHhCcEEEEecCChhhh
Q 012043 393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITL 434 (472)
Q Consensus 393 ~V~REL~LiKV~~~~-----~~r~eI~~ia~iFrakIVDvs~~siti 434 (472)
.+++.+++|-+--.. .--..+++-...++-.|.-++...+.|
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~I 424 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISI 424 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceE
Confidence 345667777664332 223578888888888888888544443
No 304
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=71.11 E-value=20 Score=31.04 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCc---E--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 91 GIINRIAGVFARRGYNIESLAVGLNVDKA---L--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~---~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
.+..|+..+....|-+|.|..+-+....+ + +++.+.|+-..+.++...|+.--..+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 57889999999999999999999865543 2 677788999999999999999999999998873
No 305
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=70.85 E-value=11 Score=33.43 Aligned_cols=57 Identities=23% Similarity=0.442 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhccC--ceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccce
Q 012043 325 PGVLNIVTGVISRRG--YNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDL 382 (472)
Q Consensus 325 pGVL~RVtgLFsRRg--yNIeSLtVg~te~-~~iSRiTIVv~gde~~ieQIvkQL~KLidV 382 (472)
.|+|+|+-.+.-..| |.|..+.||.+.+ +.+.||.+.. .|++.+++|+.+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a-~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSA-PDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEec-CCHHHHHHHHHHHHHHcCC
Confidence 488999998777666 8899999998654 4455554333 3778899999999887554
No 306
>PRK14445 acylphosphatase; Provisional
Probab=70.83 E-value=11 Score=32.13 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|=...+.++.+++.|+++++++|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 46888999998877 6788888889999999999999999999974
No 307
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.65 E-value=15 Score=28.68 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=35.2
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
.+.||++.|+...+++- ||.-+..|.++ -+++++++. +..+++++.|.+
T Consensus 11 ~~~~gv~~~~~~~L~~~--~i~~i~~~~s~----~~is~vv~~--~d~~~av~~LH~ 59 (63)
T cd04920 11 RSLLHKLGPALEVFGKK--PVHLVSQAAND----LNLTFVVDE--DQADGLCARLHF 59 (63)
T ss_pred ccCccHHHHHHHHHhcC--CceEEEEeCCC----CeEEEEEeH--HHHHHHHHHHHH
Confidence 47899999999999875 55556666654 368888885 456666666654
No 308
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=70.65 E-value=19 Score=30.38 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=32.1
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC
Q 012043 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 315 htLSilVeN~pGVL~----RVtgLFsRRgyN-IeSLtVg~te~~~iSRiTIVv~gd 365 (472)
+...|.|..+||||. -|.+-..+.||+ |+++.+|- .+++.++++
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-------~~~l~~~~~ 49 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-------YIELELEAD 49 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-------EEEEEEE-S
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-------EEEEEEeCC
Confidence 357899999999996 577788899999 99999985 467777765
No 309
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=69.64 E-value=29 Score=29.57 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=57.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCC
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
-.++.+++..-.+||.|-+....+.-|. ||.-++=--+.. +..++-+-+.- +.+.++++.++|+++= ..+.|+|+
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~-~~a~vlvgi~v~~~~~~~~l~~~L~~~g--y~~~dls~ 83 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGD-DFARVLVGIEVPDAEDLEELIERLKALG--YPYEDLSD 83 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTT-SCSEEEEEEE-SSTHHHHHHHHHHTSSS---EEECTTT
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCC-CeeeEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCC
Confidence 3578999999999999999999998776 688888765555 67777777773 3455899999999984 78888998
Q ss_pred chHHH
Q 012043 391 LPFAE 395 (472)
Q Consensus 391 ~~~V~ 395 (472)
.+...
T Consensus 84 ne~~k 88 (91)
T PF00585_consen 84 NELAK 88 (91)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 76543
No 310
>PRK14422 acylphosphatase; Provisional
Probab=69.53 E-value=12 Score=32.08 Aligned_cols=45 Identities=4% Similarity=-0.104 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|=...+.++.|++-|+.++|++|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 46889999999987 6678888889999999999999999999974
No 311
>PRK14436 acylphosphatase; Provisional
Probab=69.00 E-value=14 Score=31.67 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++-|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 45888889998876 6788888889999999999999999999974
No 312
>PRK14428 acylphosphatase; Provisional
Probab=68.83 E-value=15 Score=32.12 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.+++.|+++.|++|++.|+.
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 46889999999886 5677778889999999999999999999974
No 313
>PRK14433 acylphosphatase; Provisional
Probab=68.29 E-value=13 Score=31.52 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++.|+++.|++|++.|+.
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 45888889998876 6788888899999999999999999999984
No 314
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.79 E-value=20 Score=27.60 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=36.8
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
.+.||+++|+...+++ +||.-++-|.++ .+++++++. +..+.+++-|+|
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s~----~~is~~V~~--~~~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGASN----HNLCFLVKE--EDKDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecCc----cEEEEEEeH--HHHHHHHHHHHH
Confidence 3689999999999964 788877777764 357888884 346777776665
No 315
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=67.37 E-value=28 Score=28.99 Aligned_cols=74 Identities=11% Similarity=0.211 Sum_probs=61.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccC--ceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRG--YNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRg--yNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
+..|++.+...|.++..+.|..+|.+.- ++-..+...++....+-.+|+.+. .++++++.+-+.|.+.-.|.-|
T Consensus 8 P~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 8 PCDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp SCEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred CCcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 3569999999999999999999999964 455667777888999999999888 6888999999999998887654
No 316
>PRK14449 acylphosphatase; Provisional
Probab=67.25 E-value=16 Score=31.03 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++.|+++++++|++.|+.
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 45888999998886 5577777779999999999999999999985
No 317
>PLN02551 aspartokinase
Probab=67.18 E-value=10 Score=42.02 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--------HHHHHHHHHhcccceEEEEecCCchHH
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHKLIDLHEVQDITHLPFA 394 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~--------~ieQIvkQL~KLidVi~V~dlt~~~~V 394 (472)
++||+++||.+.|.+.|+||+-++-+ + ..++++++.++. .++++...|+++.. | .+
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e----~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~---V-------~v 441 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E----VSISLTLDPSKLWSRELIQQELDHLVEELEKIAV---V-------NL 441 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C----CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCe---E-------EE
Confidence 68999999999999999999999643 2 458899987642 23334444543211 1 24
Q ss_pred HHhhheeEEecCcccH----HHHHHHHHHhCcEEEEec
Q 012043 395 ERELILIKIAVNTAAR----RDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 395 ~REL~LiKV~~~~~~r----~eI~~ia~iFrakIVDvs 428 (472)
.+++++|-|--.-... ..++......+.+|.-++
T Consensus 442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs 479 (521)
T PLN02551 442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS 479 (521)
T ss_pred eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE
Confidence 5677888776442221 355555566677775444
No 318
>PRK14444 acylphosphatase; Provisional
Probab=66.88 E-value=16 Score=31.24 Aligned_cols=45 Identities=7% Similarity=-0.140 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|=...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 46888999998876 7788888899999999999999999999973
No 319
>PRK14427 acylphosphatase; Provisional
Probab=66.52 E-value=16 Score=31.44 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++-|+.++|++|++.|+.
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 46888999998877 6788888899999999999999999999984
No 320
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=66.32 E-value=22 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCce
Q 012043 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN 144 (472)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvd 144 (472)
.+|.-.+|..+++|.+.+|-+- +.+.+-+|+.+.++.+.++.+.+.|+|...
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K----~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK----DTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE----ecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 4889999999999999999765 455567999999999999999999987653
No 321
>PRK09084 aspartate kinase III; Validated
Probab=66.28 E-value=20 Score=38.71 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-------HHHHHHHHHhcccceEEEEecCCchHHH
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-------SIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~-------~ieQIvkQL~KLidVi~V~dlt~~~~V~ 395 (472)
++||+++|+...|++.|+||+-++.++ ..++++++.++. ..+.+.+.|+++-. + .+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse------~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~ 381 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE------VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVE 381 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC------cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEE
Confidence 689999999999999999999998532 478999996542 23566666664222 1 245
Q ss_pred HhhheeEEecCcc-cH----HHHHHHHHHhCcEEEEecCC
Q 012043 396 RELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDH 430 (472)
Q Consensus 396 REL~LiKV~~~~~-~r----~eI~~ia~iFrakIVDvs~~ 430 (472)
+.+++|.|--..- ++ ..++......+-.++..+..
T Consensus 382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsS 421 (448)
T PRK09084 382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGAS 421 (448)
T ss_pred CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCC
Confidence 6788888865432 22 34444333334555554444
No 322
>PRK14423 acylphosphatase; Provisional
Probab=66.26 E-value=16 Score=31.18 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|+.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 45888899998876 6788889999999999999999999999974
No 323
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=65.62 E-value=14 Score=38.19 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=50.5
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-C--CeEEEEEEEeCChHHHHHHHHHHhcccc
Q 012043 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-E--GLSCITTVVPGTDESIGKLVQLLHKLID 381 (472)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~--~iSRiTIVv~gde~~ieQIvkQL~KLid 381 (472)
.++..+|.+-..++||..++|++...++|.||....-- +.. . =+-|+.+-..+.....+++...+..+.+
T Consensus 4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999886665 221 2 2455566555554456666666655444
No 324
>PRK14439 acylphosphatase; Provisional
Probab=65.57 E-value=15 Score=35.17 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG 217 (472)
.-|.-+.++|+.++ |.|-...+.++.|++.|++++|+.|++.|+..|
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 56889999999987 667778888999999999999999999998754
No 325
>PRK09181 aspartate kinase; Validated
Probab=65.53 E-value=17 Score=39.78 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=64.5
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchHHHHhhheeE
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~LiK 402 (472)
+.||++.||.+.|.+.|.||+.++-+. ..++++++.+.+.++++.+.|++...--.+. + .++++|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~------~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-------~-~~~a~Vs 406 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNA------NTITHYLWGSLKTLKRVIAELEKRYPNAEVT-------V-RKVAIVS 406 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecC------cEEEEEEcCChHHHHHHHHHHHHhcCCceEE-------E-CCceEEE
Confidence 679999999999999999999775442 5689999876445678888888755422221 2 6678877
Q ss_pred EecCcccH----HHHHHHHHHhCcEEEEecCC
Q 012043 403 IAVNTAAR----RDVLDIAKIFRARAVDVSDH 430 (472)
Q Consensus 403 V~~~~~~r----~eI~~ia~iFrakIVDvs~~ 430 (472)
|--..-.+ ..+++.....+-+|.-++..
T Consensus 407 vVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 407 AIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred EeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 75443222 35566666667777555544
No 326
>PRK14430 acylphosphatase; Provisional
Probab=65.08 E-value=17 Score=31.14 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 18 GYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 45888889998877 6677778889999999999999999999975
No 327
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=65.05 E-value=32 Score=39.63 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=48.0
Q ss_pred EEEEEEEE-cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe---CChh----hHHHHHHHHhcCceee
Q 012043 79 RHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---GTER----VLRQVVEQLNKLVNVI 146 (472)
Q Consensus 79 ~htISIlV-eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~---gdd~----~ieQI~kQL~KLvdVi 146 (472)
.+.++|.. -|+||.|.|++|+.+-.|.+|.|-.+.. +....-..+|. |.+- -.+++...+.--++++
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 37899999 9999999999999999999999999887 44445444443 4332 2344455555555555
No 328
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=64.98 E-value=41 Score=29.12 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEE--EEEeCChHHHHHHHHHHhcccceEEEEecCC
Q 012043 326 GVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCIT--TVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 326 GVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiT--IVv~gde~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
.+.+|+..+....|-+|.|..+-+... .++.||. +.+.|+-+.+.++...|+.--..+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 578899999999999999999987443 4555554 4556999999999999999999999998863
No 329
>PRK14447 acylphosphatase; Provisional
Probab=64.81 E-value=18 Score=31.14 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~-sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|=...+. ++.+++.|++++|++|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~~ 65 (95)
T PRK14447 18 FFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWARV 65 (95)
T ss_pred cchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 45888999999887 455666666 6999999999999999999983
No 330
>PRK14441 acylphosphatase; Provisional
Probab=64.60 E-value=18 Score=31.07 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
--|.-+.++|..++ +.|=...+.++.+++-|+++.++.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46889999999887 6778888889999999999999999999974
No 331
>PRK02047 hypothetical protein; Provisional
Probab=64.46 E-value=48 Score=28.47 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=53.7
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCce--eeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYN--IESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK 147 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyN--IeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVik 147 (472)
.+.+.+...+.++..+.|..++.++... -++++.-++..... +|+.+. -+++.++.|-+.|.+.-.|.-
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~ 89 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKV 89 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 5899999999999999999999999665 45577666655544 455443 357789999999988887744
No 332
>PRK14442 acylphosphatase; Provisional
Probab=64.15 E-value=17 Score=31.06 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|..+.++|..++ +.|=...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 45888999999886 6678888889999999999999999999984
No 333
>PRK14435 acylphosphatase; Provisional
Probab=63.63 E-value=18 Score=30.83 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|..+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 16 GFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred CChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 45888889998876 5566777788999999999999999999984
No 334
>PRK14438 acylphosphatase; Provisional
Probab=63.47 E-value=19 Score=30.65 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 45888889998876 6788889999999999999999999999974
No 335
>PRK14432 acylphosphatase; Provisional
Probab=63.25 E-value=19 Score=30.91 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEe-CChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVT-GDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~T-G~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.+++. |++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 35788888888876 6788888889999997 999999999999985
No 336
>PRK14421 acylphosphatase; Provisional
Probab=62.87 E-value=22 Score=31.16 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-.....++.|++.|++++|++|++.|+.
T Consensus 18 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 18 GYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 45888889998876 6788888889999999999999999999974
No 337
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=61.66 E-value=26 Score=40.91 Aligned_cols=93 Identities=10% Similarity=0.122 Sum_probs=61.2
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccceEEEEecCCchHHHH
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDLHEVQDITHLPFAER 396 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL~KLidVi~V~dlt~~~~V~R 396 (472)
.+.||+++||.+.|++.|.||+-++.+ + ..++++++..+ +.++++.++|.++-.|. +.+
T Consensus 333 ~~~~g~~a~if~~la~~~I~Vd~I~ss--e----~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~----------~~~ 396 (861)
T PRK08961 333 WQQVGFLADVFTLFKKHGLSVDLISSS--E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVK----------IIV 396 (861)
T ss_pred cccccHHHHHHHHHHHcCCeEEEEEcC--C----CEEEEEEccccccchHHHHHHHHHHHhhcCcEE----------EeC
Confidence 478999999999999999999998643 2 55888888543 45777777777543322 224
Q ss_pred hhheeEEecCcc-c----HHHHHHHHHHhCcEEEEecCC
Q 012043 397 ELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDH 430 (472)
Q Consensus 397 EL~LiKV~~~~~-~----r~eI~~ia~iFrakIVDvs~~ 430 (472)
.+++|-|--..- + -..++......+..++..+..
T Consensus 397 ~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsS 435 (861)
T PRK08961 397 PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASN 435 (861)
T ss_pred CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCc
Confidence 567777754321 2 234555554456677766654
No 338
>PRK14440 acylphosphatase; Provisional
Probab=61.16 E-value=23 Score=30.25 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...++++.+++.|+.++++.|++.|+.
T Consensus 17 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999998877 5567778888999999999999999999985
No 339
>PRK14451 acylphosphatase; Provisional
Probab=60.82 E-value=22 Score=30.28 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 45788888888876 5677778889999999999999999999984
No 340
>PRK09034 aspartate kinase; Reviewed
Probab=60.55 E-value=19 Score=38.93 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=44.5
Q ss_pred EEEE---EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 316 TLSM---LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 316 tLSi---lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
.+++ -..+.||++.|+...+++.|+||+-++.+.++ -+++++++.+ ..++.++.|++-
T Consensus 387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se----~~Is~vV~~~--d~~~av~~LH~~ 447 (454)
T PRK09034 387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNE--DAEKAVKAIYNA 447 (454)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc----ceEEEEEcHH--HHHHHHHHHHHH
Confidence 4555 35588999999999999999999999877654 6788888853 456666666653
No 341
>PRK14446 acylphosphatase; Provisional
Probab=59.50 E-value=18 Score=30.93 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 172 TWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 172 ~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-|.-+.++|+.++ +.|-...+.++.|++.|+++.++.|++.|+.
T Consensus 17 FR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 17 YRASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred EhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 4778888888876 5677888888999999999999999999984
No 342
>PRK08841 aspartate kinase; Validated
Probab=59.49 E-value=23 Score=37.64 Aligned_cols=60 Identities=12% Similarity=0.257 Sum_probs=47.4
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccce
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidV 382 (472)
-.+++.=++.||++.|+...+++.|+||.+++.+ + -+|+++++. +..++.++.|++-...
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~----~~is~vv~~--~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P----QSSMLVLDP--ANVDRAANILHKTYVT 378 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C----cEEEEEEeH--HHHHHHHHHHHHHHcC
Confidence 4677777888999999999999999999887743 2 567888874 5778888888876543
No 343
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=59.05 E-value=27 Score=38.28 Aligned_cols=70 Identities=13% Similarity=0.307 Sum_probs=55.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
|.|..+|+.|+..-|..+|..+++|+.++-|.+. .+|-+-++. +.....++.+++.++-.|..|..+.-.
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 73 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI-----GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFM 73 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC-----CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhccC
Confidence 6788999999999999999999999999998554 335555553 345678899999999998888655433
No 344
>PRK14448 acylphosphatase; Provisional
Probab=58.84 E-value=26 Score=29.89 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++-|++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 45788888888876 6677778889999999999999999999985
No 345
>PRK00907 hypothetical protein; Provisional
Probab=58.58 E-value=69 Score=27.89 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=52.8
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCc--eeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceee
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGY--NIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGy--NIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVi 146 (472)
.+.|.|.-.++++....|..++.+.+- +=.++++-++..... +|+++. .+.+.++.|-+.|.+.-.|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 589999999999999999999998865 445666666655544 555544 34778999999998887774
No 346
>PRK06291 aspartate kinase; Provisional
Probab=58.57 E-value=20 Score=38.79 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=61.4
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchHHHHhhheeE
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~LiK 402 (472)
+.||+++|+...|++.|+|++-++.+.++ ..++++++.+ ..++.++.|++...=. .-..=.+..++++|.
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse----~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Is 402 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE----SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVA 402 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEE
Confidence 78999999999999999999999877544 5678888853 3445555555422100 001113446778888
Q ss_pred EecCcc-----cHHHHHHHHHHhCcEEEEec
Q 012043 403 IAVNTA-----ARRDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 403 V~~~~~-----~r~eI~~ia~iFrakIVDvs 428 (472)
|--..- .-..++......+.+|.-++
T Consensus 403 vvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 403 VVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred EEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 865432 12456666666677775544
No 347
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=58.56 E-value=30 Score=30.82 Aligned_cols=56 Identities=30% Similarity=0.526 Sum_probs=42.1
Q ss_pred chHHHHHHHHHhccC--ceeeeEeeeecCC-CcEEEEEEeC-ChhhHHHHHHHHhcCcee
Q 012043 90 SGIINRIAGVFARRG--YNIESLAVGLNVD-KALFTIVVSG-TERVLRQVVEQLNKLVNV 145 (472)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLtVg~Ted-~~~iTIVV~g-dd~~ieQI~kQL~KLvdV 145 (472)
.|+|+|+..+.-..| |.|..+.||.+.+ ++...|.|.+ |++.+++|+.+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 589999999777766 8899999997654 4666676664 678899999999887665
No 348
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=58.37 E-value=60 Score=27.24 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=24.3
Q ss_pred eEEEeCCCC----CHHHHHHHHHhcCcEEEEecCCEEEE
Q 012043 163 LIKLNGDTS----TWPEIMWLVDIFRAKVVDISEHALTI 197 (472)
Q Consensus 163 LIKV~~~~~----~r~eI~~l~~~FrAkIVDvs~~sl~i 197 (472)
||||++... .+.-..+|++..+|.+|++-.+++++
T Consensus 44 LvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 44 LVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp EEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred eeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 445544432 23346678899999999999888875
No 349
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=58.21 E-value=20 Score=38.24 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=39.0
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 320 lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
-+.|+||+++|+...+++.|+||+.++. ++ ..++++++.+ ..++..+-|++
T Consensus 387 ~~~~~~g~~a~if~~La~~~Inv~~i~~--se----~~Is~vV~~~--d~~~a~~~Lh~ 437 (441)
T TIGR00657 387 GMKSAPGVASKIFEALAQNGINIEMISS--SE----INISFVVDEK--DAEKAVRLLHN 437 (441)
T ss_pred CCCCCCchHHHHHHHHHHCCCCEEEEEe--cC----CcEEEEEeHH--HHHHHHHHHHH
Confidence 3568999999999999999999999983 22 4588888853 35566666554
No 350
>PRK14450 acylphosphatase; Provisional
Probab=58.17 E-value=26 Score=29.79 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHA-LTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~s-l~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.+ +.|++.|+++.++.|++.|+.
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 45888889998876 6677777775 999999999999999999984
No 351
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.13 E-value=1.1e+02 Score=25.52 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=57.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchHH
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~V 394 (472)
+.+.+..--+||.|-+....+. .+.||.-.+=--... +..++-+-+.-.+..++++.++|+++= ..+.|+++.+..
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~-~~a~vlvGi~~~~~~~~~l~~~l~~~g--~~~~dls~ne~~ 77 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGS-DYGRVLVGIQVPDADLDELKERLDALG--YPYQEETDNPAY 77 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCC-CceeEEEEEEeChHHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 6788888899999999999994 378888877765444 667777776643448899999999864 667788876544
No 352
>PRK14425 acylphosphatase; Provisional
Probab=58.11 E-value=29 Score=29.85 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++-|+.++|+.|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888899998886 5677778889999999999999999999985
No 353
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.01 E-value=42 Score=26.22 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=31.9
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHh
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~ 140 (472)
.+.||++.|+...+++- ||.-+..+.+ +-.++++++.+ ..++.++.|+
T Consensus 11 ~~~~gv~~~~~~~L~~~--~i~~i~~~~s--~~~is~vv~~~--d~~~av~~LH 58 (63)
T cd04920 11 RSLLHKLGPALEVFGKK--PVHLVSQAAN--DLNLTFVVDED--QADGLCARLH 58 (63)
T ss_pred ccCccHHHHHHHHHhcC--CceEEEEeCC--CCeEEEEEeHH--HHHHHHHHHH
Confidence 47899999999999885 4555555554 23588888754 3344444443
No 354
>PRK14443 acylphosphatase; Provisional
Probab=57.73 E-value=30 Score=29.95 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 18 GFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred cCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 45788888888876 5677888889999999999999999999976
No 355
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.53 E-value=43 Score=25.71 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=34.1
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K 141 (472)
.+.||+++|+...+++ +||.-++.+.+ +-.++++++.++ .+.+++.|+|
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~~is~~V~~~~--~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGAS--NHNLCFLVKEED--KDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecC--ccEEEEEEeHHH--HHHHHHHHHH
Confidence 4689999999999964 78887776665 334888887433 5555555543
No 356
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=57.42 E-value=33 Score=29.55 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=39.8
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHH
Q 012043 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPG-TDESIGKLV 373 (472)
Q Consensus 315 htLSilVeN~pGVL~----RVtgLFsRRgyN-IeSLtVg~te~~~iSRiTIVv~g-de~~ieQIv 373 (472)
+...+.|..+||||+ -|.+-+.+.||+ +..+.+|- .|.+.++. +++..++.+
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK-------~~el~ld~~~~e~a~~~v 59 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGK-------VIELELDAESEEKAEEEV 59 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeee-------EEEEEecCcchhHHHHHH
Confidence 567899999999996 688999999999 99888874 47777776 343444333
No 357
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=57.30 E-value=35 Score=27.99 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=47.4
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHH-HHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKM-VAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KI-dafi~~L~~ 215 (472)
++.+.|.++.+.-..|+..+...||.|+++.. +...|+..-....+ ..|-..|+.
T Consensus 3 i~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 45677888888888999999999999999965 47889999999999 788888875
No 358
>PRK14637 hypothetical protein; Provisional
Probab=56.01 E-value=1.1e+02 Score=28.67 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=71.2
Q ss_pred cchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhhHHHHHHHHhcCceeeE-EEecC---Cchhhhhh
Q 012043 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIK-VEDIS---NEPHVERE 160 (472)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----d~~ieQI~kQL~KLvdVik-V~dlt---~~~~V~RE 160 (472)
.-|--..+..+....||.+.-+..........++|.++++ -+..+++-++|...+|+.- ..++. ..|-++|.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRp 86 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERV 86 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCC
Confidence 3567778888999999999999998877777889998854 3567888888877776421 11111 13334444
Q ss_pred e-----------eeEEEeCCCCCHHHHHHHHHhc-CcEEEEecCCEEEEEEeC
Q 012043 161 L-----------MLIKLNGDTSTWPEIMWLVDIF-RAKVVDISEHALTIEVTG 201 (472)
Q Consensus 161 L-----------aLIKV~~~~~~r~eI~~l~~~F-rAkIVDvs~~sl~iE~TG 201 (472)
| -+|||..+. + ..| .|.+.++.++.++++..|
T Consensus 87 L~~~~~f~r~~G~~V~V~l~~--~-------~~~~~G~L~~~~d~~v~l~~~~ 130 (151)
T PRK14637 87 IKNAAEFSIFVGETVKVWFEC--T-------GQWQVGTIAEADETCLVLTSDG 130 (151)
T ss_pred CCCHHHHHHhCCCEEEEEECC--C-------CcEEEEEEEEEeCCEEEEEECC
Confidence 4 246665521 1 225 599999999999999754
No 359
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=56.00 E-value=1.1e+02 Score=28.35 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChhhHHHHHHHHhcCceeeEEEe----cC-Cchhhhhhe
Q 012043 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (472)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g----dd~~ieQI~kQL~KLvdVikV~d----lt-~~~~V~REL 161 (472)
-+-..+..+....||-+..+.+........++|.++. +-+..+.+.+++...+|+..... |. ..|-++|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 3556778889999999999999887777789999874 34668888899988888543210 00 133344444
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 012043 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (472)
Q Consensus 162 a-----------LIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~ 202 (472)
- +|+|...... .=-+.|.|+++++.++.++++.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~~-----~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEPI-----DGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEccc-----CCceEEEEEEEEeeCCEEEEEECCC
Confidence 3 2555542110 0125678899999999999998765
No 360
>PRK04998 hypothetical protein; Provisional
Probab=55.98 E-value=78 Score=26.85 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=48.6
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceee
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVi 146 (472)
.+.+.+...+.++.++.|..+|.+..-.-+.++.-++..... +|+.+. -+++.++.|=+.|.+.-.|+
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 589999999999999999999977643333455445433333 444433 35778999999998887775
No 361
>PRK05925 aspartate kinase; Provisional
Probab=55.76 E-value=2.3e+02 Score=30.85 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=71.0
Q ss_pred cchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh---hhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEE
Q 012043 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE---RVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165 (472)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd---~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIK 165 (472)
.+|.++||.+.|.+.|+||+.++... .-++++++.++ ..++.+.+.+.++ -+++ ++..+++|-
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~----~sis~~i~~~~~~~~~~~~l~~~l~~~---~~i~-------~~~~~a~Vs 376 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN----LGVYFTIDDDDISEEYPQHLTDALSAF---GTVS-------CEGPLALIT 376 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC----CEEEEEEechhccHHHHHHHHHHhcCC---ceEE-------EECCEEEEE
Confidence 57889999999999999999885331 24666666432 2344444444432 1222 456788888
Q ss_pred EeCCCC----CHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 166 LNGDTS----TWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 166 V~~~~~----~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
|--..- --..++......+.+|.-++....-|-+.=+.+..+..++.|.
T Consensus 377 vVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~LH 429 (440)
T PRK05925 377 MIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLH 429 (440)
T ss_pred EeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHHH
Confidence 855432 1235555556667788888777666666656666665555553
No 362
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=55.43 E-value=54 Score=36.10 Aligned_cols=75 Identities=8% Similarity=0.074 Sum_probs=53.6
Q ss_pred CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC----CeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 012043 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE----GLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (472)
Q Consensus 308 ~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~----~iSRiTIVv~gde~~ieQIvkQL~KLidVi 383 (472)
+...+....+++--++ +|-|.++..+|...+.||.-|.--++... .--.+.+-++++...++++++-|.+-....
T Consensus 33 ~~~~~~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 111 (457)
T TIGR01269 33 SEAAMQNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFIS 111 (457)
T ss_pred ccccceeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhccc
Confidence 3444444555555444 99999999999999999998877665322 234555556678888999999998865543
No 363
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=55.19 E-value=2.2e+02 Score=28.21 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=55.6
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeee--cCC-CcEEEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVD-KALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~--Ted-~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
.+.+.+++-|+|--....+|..+-.+.|-.|++-.... ..+ ....+|++.=..+.++....+|.++=.|..-.
T Consensus 49 i~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~ 124 (262)
T PF14257_consen 49 IKTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRN 124 (262)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeee
Confidence 45689999999999999999999999998899998762 222 22344444444678999999999887665544
No 364
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.79 E-value=35 Score=40.09 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=34.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE 351 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te 351 (472)
...++.+...|+||.|++++++|+.-+.+|.|-.+..-.
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~G 828 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccc
Confidence 458999999999999999999999999999997775443
No 365
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=54.68 E-value=61 Score=27.57 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=52.7
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
..++.+++..-.+||.|-+....+.-+. ||.-++=--+.+ .+. +-|-+.. .+.++++.++|+++= ..+.|+++
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~~-~~~~~~l~~~L~~~g--y~~~dls~ 83 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVPD-AEDLEELIERLKALG--YPYEDLSD 83 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-SS-THHHHHHHHHHTSSS---EEECTTT
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeCC-HHHHHHHHHHHHHcC--CCeEECCC
Confidence 4678999999999999999999997765 688887765544 344 4555554 344899999999984 77888888
Q ss_pred chhh
Q 012043 154 EPHV 157 (472)
Q Consensus 154 ~~~V 157 (472)
.+..
T Consensus 84 ne~~ 87 (91)
T PF00585_consen 84 NELA 87 (91)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 7654
No 366
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=54.65 E-value=34 Score=27.87 Aligned_cols=55 Identities=5% Similarity=0.076 Sum_probs=47.1
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+.|.++.+.-..|+..+..-||++.|... +...|+......++..|-..|+.
T Consensus 3 i~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 3 IEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 35677788888888999999999999999876 46889999999999988888875
No 367
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=54.45 E-value=39 Score=29.15 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=41.6
Q ss_pred EEEEEEEcCcchHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeC-ChhhHH-HHHHHHhcC
Q 012043 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSG-TERVLR-QVVEQLNKL 142 (472)
Q Consensus 80 htISIlVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~g-dd~~ie-QI~kQL~KL 142 (472)
+...|.|..|||||. -|.+-+.+.||+ +..+.+|. .|.+.+++ +++..+ ++.+-.+||
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK-----~~el~ld~~~~e~a~~~v~~mcekL 66 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGK-----VIELELDAESEEKAEEEVKEMCEKL 66 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeee-----EEEEEecCcchhHHHHHHHHHHHHH
Confidence 567889999999995 688899999998 88877663 68888886 343333 333333444
No 368
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=54.07 E-value=64 Score=27.05 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcccceEEEEecCCchHHHHhh-------heeEEecCcccH----HHHHHHHHHhCcEEEEecCChhhh
Q 012043 367 ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL-------ILIKIAVNTAAR----RDVLDIAKIFRARAVDVSDHTITL 434 (472)
Q Consensus 367 ~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL-------~LiKV~~~~~~r----~eI~~ia~iFrakIVDvs~~siti 434 (472)
+....+.++-.+|-.++.|=--.=.+.+-.|+ -||||++....+ .-..+|++..+|.+|++-++++++
T Consensus 4 ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 4 KERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp HHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 44555666666666666554444334444443 267777655333 345568899999999998887764
No 369
>PRK05783 hypothetical protein; Provisional
Probab=53.94 E-value=74 Score=27.36 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=42.0
Q ss_pred eEEEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-hHH-HHHHHHHHhcc
Q 012043 313 RSHTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-DES-IGKLVQLLHKL 379 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~----RVtgLFsRRgyN-IeSLtVg~te~~~iSRiTIVv~gd-e~~-ieQIvkQL~KL 379 (472)
|.+...|+|..+||||+ -|.+-+.++||+ +.++.+|- .|.+.++++ ++. .+++.+=.+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK-------~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGK-------YLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeE-------EEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45789999999999995 677888788884 88888874 366777753 333 33443334565
No 370
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=53.69 E-value=51 Score=38.48 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=78.5
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCc----eeeEEEecCCchhhhhhe
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV----NVIKVEDISNEPHVEREL 161 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLv----dVikV~dlt~~~~V~REL 161 (472)
+.++||++.|+...|++.|+||+-++.+.++ --++++++.++ .+..++-|++-. .-.++.. -.+...+
T Consensus 325 m~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~d--~~~av~~L~~~f~~el~~~~~~~----i~~~~~v 396 (819)
T PRK09436 325 MKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQSD--AAKAKRALEEEFALELKEGLLEP----LEVEENL 396 (819)
T ss_pred CCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHHhccCCcce----EEEeCCE
Confidence 3478999999999999999999988866433 23778887432 334444444321 1001111 1245678
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 012043 162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 162 aLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++|.|--.. .--..++......+.+|.-++ .....|-+.=+.+..+..++.|..
T Consensus 397 alIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~ 457 (819)
T PRK09436 397 AIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQ 457 (819)
T ss_pred EEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHH
Confidence 999886543 234467777777788886555 555566666667777777777765
No 371
>PRK14640 hypothetical protein; Provisional
Probab=53.47 E-value=76 Score=29.61 Aligned_cols=105 Identities=11% Similarity=0.217 Sum_probs=73.9
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhhHHHHHHHHhcCceeeEEE----ecC-Cchhhhhhee
Q 012043 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVE----DIS-NEPHVERELM 162 (472)
Q Consensus 92 VL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----d~~ieQI~kQL~KLvdVikV~----dlt-~~~~V~RELa 162 (472)
+...+.-+....||-+..+.........+++|.++++ -+..+.+-++|+.++|+.... .|. ..|-++|.|-
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~ 87 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLF 87 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCC
Confidence 4556778888999999999988776666788888753 356788999999999864221 110 1334555542
Q ss_pred -----------eEEEeCCC--CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 012043 163 -----------LIKLNGDT--STWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (472)
Q Consensus 163 -----------LIKV~~~~--~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~ 203 (472)
.|||++.. .. -+.|.|++.++.++.+++++-|..
T Consensus 88 ~~~~f~r~~G~~v~V~l~~~~~~-------~k~~~G~L~~v~~~~v~l~~~~~~ 134 (152)
T PRK14640 88 KVAQFEKYVGQEAAVTLRMATNN-------RRKFKGVIKAVQGDMITLTVDGKD 134 (152)
T ss_pred CHHHHHHhCCCeEEEEEecccCC-------ceEEEEEEEEEeCCEEEEEECCeE
Confidence 46666532 22 267999999999999999987764
No 372
>PRK14452 acylphosphatase; Provisional
Probab=52.81 E-value=36 Score=30.25 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-.....++.|++-|+++++++|++.++.
T Consensus 34 GFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 34 GFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred ChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 46889999999887 5677778888999999999999999998886
No 373
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=52.68 E-value=44 Score=27.70 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.0
Q ss_pred CHHHHHHHHHhcCcEEE--EecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 172 TWPEIMWLVDIFRAKVV--DISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 172 ~r~eI~~l~~~FrAkIV--Dvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
--.+|+++...|+.++| |.+.+++++=++|+...++.+.+.|++
T Consensus 17 ~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~ 62 (71)
T cd04910 17 YDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLEN 62 (71)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHH
Confidence 45689999999999997 557889999999999999999999954
No 374
>PRK05783 hypothetical protein; Provisional
Probab=52.33 E-value=66 Score=27.66 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=42.2
Q ss_pred eEEEEEEEEcCcchHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCCh-h-hHHHHHHHHhcC
Q 012043 78 KRHTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTE-R-VLRQVVEQLNKL 142 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gdd-~-~ieQI~kQL~KL 142 (472)
|.+...|+|..|||||. -|.+-+.++||+ ++++.+|. .+.+.+++++ + ..+++.+-.+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK-----~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGK-----YLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeE-----EEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45789999999999995 577788788884 77777664 5788887643 3 334444444555
No 375
>PRK14437 acylphosphatase; Provisional
Probab=51.84 E-value=35 Score=30.39 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.|++.|+++.|+.|++.|+.
T Consensus 37 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 37 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred CchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 46889999999886 5677788888999999999999999999984
No 376
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=51.17 E-value=37 Score=37.28 Aligned_cols=68 Identities=10% Similarity=0.297 Sum_probs=53.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC-ChhhHHHHHHHHhcCceeeEEEecC
Q 012043 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 82 ISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g-dd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
|.|..+|+.|+..-|..+|..+++|+.++-+.+. ++|-+-+.. +...+.++++++.++-.|..|....
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 71 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhc
Confidence 6788999999999999999999999999988443 555555543 3455788999998888888775433
No 377
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=50.83 E-value=59 Score=24.66 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHh
Q 012043 172 TWPEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNL 213 (472)
Q Consensus 172 ~r~eI~~l~~~FrAkIVDvs~~--sl~iE~TG~~~KIdafi~~L 213 (472)
....|-+|-+.++++ +.+.++ .-.+.++|+++.++...+++
T Consensus 18 ~G~~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 18 KGSNIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp GGHHHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCCcHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 445788999999999 677665 77999999999999887653
No 378
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=50.43 E-value=17 Score=31.37 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=23.2
Q ss_pred hcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 012043 182 IFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 182 ~FrAkIVDvs~~-sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+++.+.+.+ -++||+..+++|+++|++.|++
T Consensus 52 ih~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~ 86 (101)
T PF02641_consen 52 IHSARLLELSDDLPVVIEFIDTEEKIEAFLPELKE 86 (101)
T ss_dssp ---------TTS-EEEEEEEEEHHHHHHHHHHHCT
T ss_pred ccccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHH
Confidence 445677778877 7999999999999999999986
No 379
>PRK14424 acylphosphatase; Provisional
Probab=49.27 E-value=44 Score=28.95 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|=...+.++-|++.|++++|+.|++.|+.
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 46888899998876 4566777778999999999999999999985
No 380
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=49.02 E-value=85 Score=36.81 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=69.1
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCchHHHHhhheeE
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~LiK 402 (472)
+.||++.||.+.|.+.|+|++-++.+..+. .+.++++. ...+.+.+.|+++-.. ..=.+++++++|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~----sis~~i~~--~~~~~~~~~l~~~~~~-------~~i~v~~~~a~Vs 395 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ----LLQLAYTS--EVADSALKLLDDAALP-------GELKLREGLALVA 395 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc----EEEEEEeH--HHHHHHHHHHHhhcCC-------CcEEEeCCeEEEE
Confidence 568999999999999999999998664432 46666663 3566667777765211 2224568899988
Q ss_pred EecCcc-c----HHHHHHHHHHhCcEEEEecCChhhh
Q 012043 403 IAVNTA-A----RRDVLDIAKIFRARAVDVSDHTITL 434 (472)
Q Consensus 403 V~~~~~-~----r~eI~~ia~iFrakIVDvs~~siti 434 (472)
|--..- + -..++......+-+++..+...+.|
T Consensus 396 vVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~si 432 (810)
T PRK09466 396 LVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSL 432 (810)
T ss_pred EeCCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEE
Confidence 865432 1 2467776777788898888776665
No 381
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=48.29 E-value=1.6e+02 Score=24.41 Aligned_cols=69 Identities=28% Similarity=0.375 Sum_probs=52.6
Q ss_pred EEEEEEcCc-chHHHHHHHHHhccC-ceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 81 TISVFVGDE-SGIINRIAGVFARRG-YNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 81 tISIlVeN~-pGVL~RIagLFsRRG-yNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
+|++.-+.+ +++..|++.+--... .=+-++.+-..++.-+-++++.|+-+.++++.+.|.++=.|..+.
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 73 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVK 73 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEE
Confidence 455555554 789999999977665 445555555554444568889999999999999999999998876
No 382
>PRK14431 acylphosphatase; Provisional
Probab=47.80 E-value=62 Score=27.62 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=35.7
Q ss_pred CHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 172 TWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 172 ~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-|.-+.++|..++ +.|-.. ++++.+++.|+++.|++|++.|+.
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~-~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNV-DDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEEC-CCcEEEEEEcCHHHHHHHHHHHhc
Confidence 4778888888876 445555 457999999999999999999986
No 383
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=45.16 E-value=88 Score=34.54 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=50.7
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-----E-EEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-----L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-----~-iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
...+++-.++ +|.|.++..+|...++||.-|---++.... . +.+-++++...++++++-|.+-.....+.
T Consensus 39 ~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (457)
T TIGR01269 39 NNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGIN 114 (457)
T ss_pred eEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcccccc
Confidence 3444444444 999999999999999999988877653222 2 55667788888999999998766544333
No 384
>PRK14645 hypothetical protein; Provisional
Probab=44.96 E-value=1.2e+02 Score=28.56 Aligned_cols=108 Identities=16% Similarity=0.296 Sum_probs=75.5
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhhHHHHHHHHhcCceeeEEEe----cC-Cc
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NE 154 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------d~~ieQI~kQL~KLvdVikV~d----lt-~~ 154 (472)
.+|+.-+-..+..+....||-+..+.+.......+++|.++.+ -+..+++-++|.+++|+..... |. ..
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 3677788899999999999999999988766666788888742 2567889999999998753211 00 02
Q ss_pred hhhhhhee-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 012043 155 PHVERELM-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (472)
Q Consensus 155 ~~V~RELa-----------LIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~ 203 (472)
|-++|.|- .+||+.. -+.|.|++.++..+.++++.-|..
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~~----------~k~~~G~L~~~~d~~i~l~~~~~~ 134 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRGP----------GENFTGRIKAVSGDQVTFDVGGED 134 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEcC----------CeEEEEEEEEEeCCEEEEEECCeE
Confidence 33444442 3555421 256778899999899888876554
No 385
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=43.53 E-value=1.2e+02 Score=27.48 Aligned_cols=99 Identities=12% Similarity=0.187 Sum_probs=68.7
Q ss_pred cchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhc--CceeeEEEecCCchhhhhheeeEEE
Q 012043 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK--LVNVIKVEDISNEPHVERELMLIKL 166 (472)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~K--LvdVikV~dlt~~~~V~RELaLIKV 166 (472)
+|=-.+||-..+..-||+|+ +. .........++|+|.+ .+ .+.|.-|-++|
T Consensus 21 rP~p~~~IE~Am~e~~~~v~-----p~----------ksak~QalevIk~L~~~~~i------------pI~ra~m~l~v 73 (125)
T PF09377_consen 21 RPYPPTRIEKAMKEAHFSVD-----PN----------KSAKQQALEVIKKLKEKQII------------PIKRAKMRLRV 73 (125)
T ss_dssp BTT-HHHHHHHHHHTTS-SS-----TT----------S-HHHHHHHHHHHHTT--TS--------------EEEEEEEEE
T ss_pred CCCCHHHHHHHHHhCCcccC-----CC----------CCHHHHHHHHHHHHHHhCCC------------ceeeeeEEEEE
Confidence 33344555555555566643 11 1346677788888876 44 36788899999
Q ss_pred eCCCCCHHHHHHHHHhcCcEEEE--ecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 167 NGDTSTWPEIMWLVDIFRAKVVD--ISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 167 ~~~~~~r~eI~~l~~~FrAkIVD--vs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
.++.+....+...+..+.+.+.+ -+.+++.+.+.=+|+.-+.|.+.++
T Consensus 74 ~ip~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v~ 123 (125)
T PF09377_consen 74 TIPSKYAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELVN 123 (125)
T ss_dssp EEBCCCHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHHc
Confidence 99999999998888888887743 4788888888888888888887765
No 386
>PRK00341 hypothetical protein; Provisional
Probab=43.25 E-value=1.5e+02 Score=25.59 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=49.8
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceee--eEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceee
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIE--SLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIe--SLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVi 146 (472)
.+.+.|.-.+.++..+.|..++.+.. ..+ ++++-++..... +|+.+. -+++.++.|-+.|.+.-.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 47899999999999999999998665 653 444445544433 555544 35778999999998888774
No 387
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=43.23 E-value=81 Score=25.92 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=38.9
Q ss_pred EEEEEEeC---chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHh
Q 012043 316 TLSMLVNN---TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLH 377 (472)
Q Consensus 316 tLSilVeN---~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~ 377 (472)
.++|.|.| .+|+=.+++..+..+||.+.+. +...... ..=+|... ++....++|.++|.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~--~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEV--GNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeec--CCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 35666666 4788999999999999999554 4443332 33333333 45666777777764
No 388
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=43.09 E-value=86 Score=26.05 Aligned_cols=54 Identities=20% Similarity=0.517 Sum_probs=35.2
Q ss_pred EEEEEEcCcchHHHH----HHHHHhccCce-eeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHH
Q 012043 81 TISVFVGDESGIINR----IAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (472)
Q Consensus 81 tISIlVeN~pGVL~R----IagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL 139 (472)
...|.|..+|||+.- |..-....||+ ++++.+|. .+++.++|++ +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-----~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-----VIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----EEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346777789999865 45555557998 87766543 4778777754 4455555544
No 389
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=41.05 E-value=72 Score=36.84 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=60.2
Q ss_pred EEEEEEE-eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CC---hH-HHHHHHHHHhcccceEEEEec
Q 012043 315 HTLSMLV-NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GT---DE-SIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 315 htLSilV-eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gd---e~-~ieQIvkQL~KLidVi~V~dl 388 (472)
+..+|.. -++||.|.|++|+.+-.|.+|.|-.+.. +...+..+++.-. |. .. -.+++...+.--+++.. -
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 6888888 9999999999999999999999988877 6667766666643 32 22 34555666666667662 2
Q ss_pred CCchHHHHhhheeEEecC
Q 012043 389 THLPFAERELILIKIAVN 406 (472)
Q Consensus 389 t~~~~V~REL~LiKV~~~ 406 (472)
.+....+-. .++-|++.
T Consensus 623 ~~~~~~~~~-~~~e~r~~ 639 (693)
T PRK00227 623 GITATFWHG-NILEVRTE 639 (693)
T ss_pred CCCceEeeC-cEEEEEeC
Confidence 222333333 56667764
No 390
>PRK08841 aspartate kinase; Validated
Probab=40.45 E-value=81 Score=33.64 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=42.7
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCc
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV 143 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLv 143 (472)
-.+++.=++.||++.|+...+++.|+||.+++.+ + -.++++|+. +..++.++.|++-.
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~--~~is~vv~~--~~~~~av~~lH~~f 376 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P--QSSMLVLDP--ANVDRAANILHKTY 376 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C--cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 3577777788999999999999999999877742 2 247888874 44556666665544
No 391
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=40.42 E-value=78 Score=28.03 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043 328 LNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 328 L~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd 365 (472)
++--..-+.+|||+.+-+...+++..++.+.|+.|.|.
T Consensus 69 ~~MY~~~a~~~gw~~~~l~~~~~~~~G~k~a~~~I~G~ 106 (115)
T PF03462_consen 69 FRMYQRYAERRGWKVEVLDYSPGEEGGIKSATLEISGE 106 (115)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEE-SSSSEEEEEEEEEST
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccceeEEEEEEEcC
Confidence 34445556789999999999999999999999999986
No 392
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=40.14 E-value=1e+02 Score=25.62 Aligned_cols=54 Identities=17% Similarity=0.409 Sum_probs=35.2
Q ss_pred EEEEEEeCchhHHHH----HHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 012043 316 TLSMLVNNTPGVLNI----VTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (472)
Q Consensus 316 tLSilVeN~pGVL~R----VtgLFsRRgyN-IeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL 376 (472)
...|.|..+|||+.- |..-....||+ ++++.+|. .+++.++++. +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-------VIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346778899999965 44555557998 88876663 3566667644 4455555544
No 393
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=39.76 E-value=75 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=32.0
Q ss_pred CHHHHHHHHHhcCcEEEEecCCEEEEEEeCC-hhHHHHHHHHh
Q 012043 172 TWPEIMWLVDIFRAKVVDISEHALTIEVTGD-PGKMVAVQRNL 213 (472)
Q Consensus 172 ~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~-~~KIdafi~~L 213 (472)
.-.-|-+|.+.|+++ +++..+. .+.++|+ ++++++..+.+
T Consensus 20 gG~~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 20 GGKTIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred CchHHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHh
Confidence 344688999999999 5787764 6999998 88998877765
No 394
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=39.57 E-value=1.5e+02 Score=24.80 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=49.5
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhc-cCceeeeEeeeecCCCcEEEEEEeC-ChhhHHHHHHHHhcCceeeEEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFAR-RGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsR-RGyNIeSLtVg~Ted~~~iTIVV~g-dd~~ieQI~kQL~KLvdVikV~ 149 (472)
-|+-|++|.=+|+-+..|..-+.. -|..|. ..++.|.+-+++.+ +.+.+.+..++|+.|-.|+.+.
T Consensus 3 ~hIss~vV~~~p~~~~~v~~~l~~~~gvEVh-----~~~~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 3 MHISSLVVHARPERLEEVAEALAAIPGVEVH-----AVDEDGKIVVTIEAESSEEEVDLIDAINALPGVLSAS 70 (79)
T ss_dssp SCEEEEEEEE-CCCHHHHHHHHCCSTTEEEE-----EEETTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEEE
T ss_pred eeEEEEEEEECchhHHHHHHHHHcCCCcEEE-----eeCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 367789999999999999888876 454443 33344887777764 4577888999999999999886
No 395
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.47 E-value=2.2e+02 Score=23.67 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=52.6
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
+.+.+..--+||.|-+....+. .+.||.-.+=--.. +.+. +-|-+.+ . .+++++++|+++= ..+.|+++.+.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~-~-~~~~l~~~l~~~g--~~~~dls~ne~ 76 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPD-A-DLDELKERLDALG--YPYQEETDNPA 76 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeCh-H-HHHHHHHHHHHcC--CCeEECCCCHH
Confidence 5788888899999999999994 37888877765433 3344 3444443 3 7889999998864 66777887654
Q ss_pred h
Q 012043 157 V 157 (472)
Q Consensus 157 V 157 (472)
.
T Consensus 77 ~ 77 (81)
T cd04907 77 Y 77 (81)
T ss_pred H
Confidence 3
No 396
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=37.08 E-value=1.1e+02 Score=22.68 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=39.0
Q ss_pred eCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 167 NGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 167 ~~~~~~r~eI~~l~~~FrAkIVDv--s~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.++-..-..+..+++.+++.|+|. +.+ +.+.+.=.+++.+.|.+.|..
T Consensus 2 ~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~-V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 2 SCDYSQYGKVERLLEQNGIEIVDEDYTDD-VTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp EE-CCCHHHHHHHHHHTTTEEEEEEECTT-EEEEEEEECCCHHHHHHHHHH
T ss_pred EechhhHHHHHHHHHHCCCEEEcceecce-EEEEEEECHHHHHHHHHHHHH
Confidence 345556778999999999999876 555 999999999999999988764
No 397
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=37.05 E-value=1.9e+02 Score=26.14 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=63.2
Q ss_pred HHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhhHHHHHHHHhcCceeeEEEe----cC-Cchhhhhhee----
Q 012043 96 IAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM---- 162 (472)
Q Consensus 96 IagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----d~~ieQI~kQL~KLvdVikV~d----lt-~~~~V~RELa---- 162 (472)
|..+....||.+-.+.+........++|.++.+ -+..+++.+.++.++|+..... |. ..|-++|.|-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~ 81 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRD 81 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHH
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHH
Confidence 345677889999999998877666789988643 3557788888888888733210 00 0233444442
Q ss_pred -------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 012043 163 -------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (472)
Q Consensus 163 -------LIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~K 205 (472)
.++|....... =-+.|.|+++++++++++++..|...+
T Consensus 82 ~~~~iG~~v~v~~~~~~~-----~~~~~~G~L~~~~~~~i~l~~~~~~~~ 126 (141)
T PF02576_consen 82 FERFIGRKVKVKLKQPVN-----GRKEFEGKLLEVDEDEITLEVEGKGKK 126 (141)
T ss_dssp HHHH-SEEEEEE-SS-SS-----S-SEEEEEEEEEETTEEEEEEE-SS-E
T ss_pred HHHhcCCeEEEEEeccCC-----CcEEEEEEEEEEeCCEEEEEECCccce
Confidence 35555422110 024688999999999999999987543
No 398
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=36.64 E-value=88 Score=25.09 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=45.4
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+.|.++.+.-..|+..+..-||++++... +...|+......++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~ 60 (79)
T cd01514 3 IMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60 (79)
T ss_pred EEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhh
Confidence 45677888877888999999999999999866 56788888888888888888775
No 399
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=35.33 E-value=56 Score=38.14 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=42.9
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hhHHHHHHHHhcCceeeEEEec
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--~~ieQI~kQL~KLvdVikV~dl 151 (472)
..+.||+++|+...+++.|+||..++.|.++. -++++|+.++ +.++.|.+.+..--..++|--+
T Consensus 406 m~~~~gv~arif~aL~~~~InI~~IsqgsSe~--~Is~vV~~~d~~~al~~LH~~f~~~~~~~~i~l~ 471 (819)
T PRK09436 406 MRTHPGIAAKFFSALGRANINIVAIAQGSSER--SISVVIDNDDATKALRACHQSFFLSDQVLDVFVI 471 (819)
T ss_pred cccCcCHHHHHHHHHHHCCCCEEEEEeccccc--eEEEEEcHHHHHHHHHHHHHHHhcccccccEEEE
Confidence 34789999999999999999999988776633 3777776433 3444444444322245555544
No 400
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=35.27 E-value=14 Score=23.49 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=10.5
Q ss_pred cccccceeeeec
Q 012043 9 QKLNLSHCFITK 20 (472)
Q Consensus 9 ~~~~~~~~~~~~ 20 (472)
+.|+||+|.|++
T Consensus 3 ~~Ldls~n~l~~ 14 (22)
T PF00560_consen 3 EYLDLSGNNLTS 14 (22)
T ss_dssp SEEEETSSEESE
T ss_pred cEEECCCCcCEe
Confidence 689999999984
No 401
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=33.25 E-value=1.5e+02 Score=24.58 Aligned_cols=54 Identities=28% Similarity=0.568 Sum_probs=35.6
Q ss_pred EEEEEEcCcchHHHH----HHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-----hhhHHHHHHHH
Q 012043 81 TISVFVGDESGIINR----IAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (472)
Q Consensus 81 tISIlVeN~pGVL~R----IagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gd-----d~~ieQI~kQL 139 (472)
...|.|..+|||+.- |..-+...||+ ++++.+|. .+++.++|+ ...++.+.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-----~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-----YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 567888899999854 56666668998 77765543 477777763 23345555444
No 402
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=33.18 E-value=90 Score=25.03 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=45.2
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+.|.++.+.-..|++.+..-||++++..+ +...|.......++..|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~ 59 (78)
T cd03713 3 IMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRS 59 (78)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHh
Confidence 35677778877788999999999999998865 46778888888888888888875
No 403
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=32.92 E-value=1.2e+02 Score=25.12 Aligned_cols=54 Identities=19% Similarity=0.447 Sum_probs=35.7
Q ss_pred EEEEEEeCchhHHHH----HHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHH
Q 012043 316 TLSMLVNNTPGVLNI----VTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (472)
Q Consensus 316 tLSilVeN~pGVL~R----VtgLFsRRgyN-IeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL 376 (472)
...|.|..+|||+.- |..-+.+.||+ ++++.+|. .+++.++++ .+.++++.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-------YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 467888899999965 55666668998 77766653 356655653 23455555544
No 404
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=32.51 E-value=1.1e+02 Score=24.63 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=45.6
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+.|.++.+.-..|+.++..-||+|++... +...|+......++..|-..|+.
T Consensus 3 i~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~ 59 (78)
T cd03711 3 YLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPS 59 (78)
T ss_pred eEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHh
Confidence 35677888888888999999999999998754 57778888888888888888875
No 405
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=31.98 E-value=77 Score=26.83 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEE
Q 012043 175 EIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKEL 221 (472)
Q Consensus 175 eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEv 221 (472)
-..++.+.+++ ..=.++||++|.++-++..++.|++.|.+-+
T Consensus 46 ~~~~i~~~~~~-----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 46 FVEQIRELTGG-----RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp HHHHHHHHTTT-----SSEEEEEESSSSHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccc-----ccceEEEEecCcHHHHHHHHHHhccCCEEEE
Confidence 45566666666 3334789999999999999999999995433
No 406
>PRK14636 hypothetical protein; Provisional
Probab=31.85 E-value=4.7e+02 Score=25.16 Aligned_cols=104 Identities=10% Similarity=0.084 Sum_probs=70.3
Q ss_pred chHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhhHHHHHHHHhcCceeeEE---------E-----
Q 012043 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKV---------E----- 149 (472)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------d~~ieQI~kQL~KLvdVikV---------~----- 149 (472)
+-+...+..+....||-+..+.+-.......++|.++.+ -+..+++-++|..++|+... .
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 345667888899999999999986655555688888643 26788999999999996432 1
Q ss_pred -ecCCchhhhhhe-eeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 012043 150 -DISNEPHVEREL-MLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (472)
Q Consensus 150 -dlt~~~~V~REL-aLIKV~~~--~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~T 200 (472)
.|+...+..|-. =+|||++. ...+ +.|.|+++++..+.++++.-
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~~~g~-------k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEPLDGR-------KQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEecccCCe-------EEEEEEEEEEeCCEEEEEEc
Confidence 122222333322 23555543 1222 56889999999999999873
No 407
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=31.40 E-value=90 Score=31.45 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=79.2
Q ss_pred hccCceeeeEeeeecCCC-c---------------------EEEEEEeC-ChhhHHHHHHHHhcCc-eeeEEEec-----
Q 012043 101 ARRGYNIESLAVGLNVDK-A---------------------LFTIVVSG-TERVLRQVVEQLNKLV-NVIKVEDI----- 151 (472)
Q Consensus 101 sRRGyNIeSLtVg~Ted~-~---------------------~iTIVV~g-dd~~ieQI~kQL~KLv-dVikV~dl----- 151 (472)
.+.|+.+..|-.-..+++ + +++..+.| .++.++++.+.|..|= |.+-.=++
T Consensus 21 ~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yq 100 (223)
T COG2102 21 LEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQ 100 (223)
T ss_pred HHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHH
Confidence 456777777666554444 1 14555667 4568999988888775 33333222
Q ss_pred -CCchhhhhheeeEEEeC--CCCCHHHHHHHHHh-cCcEEEEecCCEEEEEEeCC---hhHHHHHHHHhccCCc
Q 012043 152 -SNEPHVERELMLIKLNG--DTSTWPEIMWLVDI-FRAKVVDISEHALTIEVTGD---PGKMVAVQRNLSKFGI 218 (472)
Q Consensus 152 -t~~~~V~RELaLIKV~~--~~~~r~eI~~l~~~-FrAkIVDvs~~sl~iE~TG~---~~KIdafi~~L~~fGI 218 (472)
+.-+.+++|+.|.-+.- ...++.-+.++++. |++.||.++..-+-=+.-|. .+-++.+..+=+.|||
T Consensus 101 k~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi 174 (223)
T COG2102 101 KERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYGI 174 (223)
T ss_pred HHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcCC
Confidence 33567888999866532 23677788899999 99999999988776555553 4667777777677885
No 408
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=31.10 E-value=2e+02 Score=23.93 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=49.7
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCc--eeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGY--NIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGy--NIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV 148 (472)
.|.+.+...|.++..+.|..+|.+..= .-..+...++..... +|+.+. .+.+.++.+-+.|.+.-.|.-|
T Consensus 10 ~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 10 DYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp EEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred cceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 589999999999999999999999743 334444554444334 455443 4678899999999887777543
No 409
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=31.03 E-value=1.1e+02 Score=33.42 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhccC--ceeeeeeeeecC-CCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 325 pGVL~RVtgLFsRRg--yNIeSLtVg~te-~~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
.|+|+|+-...-.-| |.|+.+.+|.+. ++.+.||++..+ |++.+++|..||.++=
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~-~~~~l~~Il~~l~~~G 72 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSAR-DHQHLEEILTELIDLG 72 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecC-CHHHHHHHHHHHHHcC
Confidence 588899888887765 999999999754 577888775544 7889999999999763
No 410
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=30.73 E-value=16 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.5
Q ss_pred ccccccceeeeec
Q 012043 8 YQKLNLSHCFITK 20 (472)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (472)
-++|+||+|.++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4789999999763
No 411
>PRK05925 aspartate kinase; Provisional
Probab=30.18 E-value=1.9e+02 Score=31.47 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh---HHHHHHHHHHhcccceEEEEecCCchHHHHhhhe
Q 012043 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD---ESIGKLVQLLHKLIDLHEVQDITHLPFAERELIL 400 (472)
Q Consensus 324 ~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde---~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~L 400 (472)
.+|.++||.+.|.+.|+||+.++..+ +.++++++.++ ..++.+.+.|.++- ++. ++..+++
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~------~sis~~i~~~~~~~~~~~~l~~~l~~~~---~i~-------~~~~~a~ 374 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN------LGVYFTIDDDDISEEYPQHLTDALSAFG---TVS-------CEGPLAL 374 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC------CEEEEEEechhccHHHHHHHHHHhcCCc---eEE-------EECCEEE
Confidence 57889999999999999999986442 36888888542 23444454444421 121 3346777
Q ss_pred eEEecCccc-H---HHHHHHHHHhCcEEEEecCChh
Q 012043 401 IKIAVNTAA-R---RDVLDIAKIFRARAVDVSDHTI 432 (472)
Q Consensus 401 iKV~~~~~~-r---~eI~~ia~iFrakIVDvs~~si 432 (472)
|-|--..-. + ..++......+-+|.-++....
T Consensus 375 VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~ 410 (440)
T PRK05925 375 ITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDM 410 (440)
T ss_pred EEEeCCCcccccHHHHHHHHHhhCCCCEEEEECCCc
Confidence 777543222 1 3444444555557766665443
No 412
>PRK00110 hypothetical protein; Validated
Probab=29.83 E-value=2.7e+02 Score=28.18 Aligned_cols=123 Identities=10% Similarity=0.182 Sum_probs=73.8
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceee-eEeeee-cCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhh
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIE-SLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIe-SLtVg~-Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V 157 (472)
-++.++.+|+....+.|-.+|++.|-|+- +=+|.- =+..|+|++--...|+.++.++. .-..| +..++
T Consensus 97 iiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~~~~~d~~~e~aie--aGaeD------v~~e~-- 166 (245)
T PRK00110 97 IIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIEPLDEDELMEAALE--AGAED------VETDD-- 166 (245)
T ss_pred EEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeCCCCHHHHHHHHHh--CCCCE------eeccC--
Confidence 47889999999999999999999999872 122222 23445665542211223333322 12223 22111
Q ss_pred hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec----CCEEEEEEeCC-hhHHHHHHHHhccCC
Q 012043 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS----EHALTIEVTGD-PGKMVAVQRNLSKFG 217 (472)
Q Consensus 158 ~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs----~~sl~iE~TG~-~~KIdafi~~L~~fG 217 (472)
+ .+.|-++|+.-..|.+-.+.++..+.+.. |.. .+++++. .+++..|++.|+...
T Consensus 167 --~--~~~i~~~p~~~~~v~~~L~~~g~~~~~sei~~~P~~-~v~l~~e~~~~~~~li~~Led~d 226 (245)
T PRK00110 167 --E--SFEVITAPEDFEAVRDALEAAGLEAESAEVTMIPQN-TVELDEETAEKLLKLIDALEDLD 226 (245)
T ss_pred --C--eEEEEECHHHHHHHHHHHHHcCCCeeeeEEEEecCC-CcccCHHHHHHHHHHHHHHhcCC
Confidence 1 38888988888888777777766554332 222 3455544 456777888887655
No 413
>PRK12378 hypothetical protein; Provisional
Probab=29.57 E-value=1.3e+02 Score=30.24 Aligned_cols=122 Identities=14% Similarity=0.272 Sum_probs=0.0
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCcee-eeEeee-ecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEE--EecCCchh
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNI-ESLAVG-LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKV--EDISNEPH 156 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNI-eSLtVg-~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV--~dlt~~~~ 156 (472)
.+.++.+|+....+.|-.+|++.|-|+ ++=+|. -=+..|+|++--...|+.++..+.- -+ +|+..++-
T Consensus 95 iVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~~~d~~~e~aiea--------Ga~~edv~~~~~ 166 (235)
T PRK12378 95 IVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGDDEDELLEALIDA--------DVDVEDVEEEEG 166 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEEeCCCCHHHHHHHHHhC--------CCCcccccccCC
Q ss_pred hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEE---EEEEeCC-hhHHHHHHHHhccC
Q 012043 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL---TIEVTGD-PGKMVAVQRNLSKF 216 (472)
Q Consensus 157 V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl---~iE~TG~-~~KIdafi~~L~~f 216 (472)
. +.|-|+++.-..|.+-.+..+-.+.+..-.++ ++++++. .+++..|++.|+..
T Consensus 167 ~------~~i~t~p~~~~~v~~~L~~~g~~~~~sei~~~P~~~v~l~~e~~~~~~~li~~Led~ 224 (235)
T PRK12378 167 T------ITVYTDPTDFHKVKKALEAAGIEFLVAELEMIPQNPVELSGEDLEQFEKLLDALEDD 224 (235)
T ss_pred e------EEEEECHHHHHHHHHHHHHcCCCceeeEEEEecCCCccCCHHHHHHHHHHHHHHhcC
No 414
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=29.25 E-value=3.9e+02 Score=23.59 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=61.6
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhcc--CceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRR--GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRR--gyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
.+++++.=.++|+.-..|..+..|. |.-..-+++-++...++-..+|.+. .+-++++-|-+.|.|.--|.-|
T Consensus 15 ~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~VkmV 89 (90)
T COG2921 15 TFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEIVKMV 89 (90)
T ss_pred cceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCceEEe
Confidence 4799999999999999999999987 4566777889999999999999988 4667899999999988777654
No 415
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=28.61 E-value=1.3e+02 Score=24.24 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=45.0
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+.|.++.+.-..|+..+..-||+|++... +...|+......++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~ 59 (78)
T cd04097 3 IMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRS 59 (78)
T ss_pred EEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHh
Confidence 35677778878888999999999999998864 45778888888888888888875
No 416
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=28.22 E-value=2.7e+02 Score=23.22 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=50.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEe
Q 012043 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 315 htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~d 387 (472)
|+-|++|.=+|+-+..+..-+.. +...-+...++ . .+|.+|+.+ +.+.+.+..++|+.|-.|+.+.-
T Consensus 4 hIss~vV~~~p~~~~~v~~~l~~----~~gvEVh~~~~-~-GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 4 HISSLVVHARPERLEEVAEALAA----IPGVEVHAVDE-D-GKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp CEEEEEEEE-CCCHHHHHHHHCC----STTEEEEEEET-T-TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred eEEEEEEEECchhHHHHHHHHHc----CCCcEEEeeCC-C-CeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 77899999999999999988876 23334433323 2 779999884 56789999999999999998863
No 417
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=27.59 E-value=48 Score=30.02 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.6
Q ss_pred hcCcEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 012043 182 IFRAKVVDISEHA-LTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 182 ~FrAkIVDvs~~s-l~iE~TG~~~KIdafi~~L~~ 215 (472)
+++++|.+.+.+- +++|+..+++||..|+..+++
T Consensus 55 ~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e 89 (109)
T COG1993 55 IHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDE 89 (109)
T ss_pred ccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4556777777765 999999999999999999986
No 418
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=27.35 E-value=1.4e+02 Score=24.47 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=45.3
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
++.+.|.++.+.-..|+..+..-||+|++..+ +...|+......++..|-..|+.
T Consensus 5 i~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs 61 (85)
T smart00838 5 IMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRS 61 (85)
T ss_pred EEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHH
Confidence 45677778877888999999999999998875 45778888888888888888875
No 419
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=27.23 E-value=2e+02 Score=22.99 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 326 GVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
.+|+.++.-|. -.+||-+=++....+..+-+|++-+.|+++.+++.++.|+..-
T Consensus 17 piis~l~~~~~-v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~ 70 (76)
T PF09383_consen 17 PIISQLIREFG-VDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQG 70 (76)
T ss_dssp CHHHHHHHHHT--EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCC
Confidence 35666555543 3467777777788888999999999999999999999998763
No 420
>PRK14646 hypothetical protein; Provisional
Probab=26.96 E-value=5.3e+02 Score=24.20 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhhHHHHHHHHhcCceeeEEEe----cC-Cchhhhh
Q 012043 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVER 159 (472)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------d~~ieQI~kQL~KLvdVikV~d----lt-~~~~V~R 159 (472)
-+...+..+....||-+--+.+.....+.+++|.++.+ -+..+.+-+++..++|+..... |. ..|-++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR 87 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC
Confidence 45667888899999999999988776767788888743 2457889999999998643211 10 1344555
Q ss_pred he-----------eeEEEeCCC-CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 012043 160 EL-----------MLIKLNGDT-STWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (472)
Q Consensus 160 EL-----------aLIKV~~~~-~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~ 203 (472)
.| -.+||++.. ... -+.|.|.+.++.++.+++++-|..
T Consensus 88 pL~~~~df~r~~G~~v~V~l~~~~~~------~~~~~G~L~~~~~~~v~l~~~g~~ 137 (155)
T PRK14646 88 ELTSERDFKTFKGFPVNVELNQKNSK------IKFLNGLLYEKSKDYLAINIKGKI 137 (155)
T ss_pred cCCCHHHHHHhCCCEEEEEEecCcCC------eEEEEEEEEEEeCCEEEEEECCEE
Confidence 44 245665422 111 267899999999999999987653
No 421
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=26.39 E-value=1.4e+02 Score=24.39 Aligned_cols=56 Identities=5% Similarity=0.026 Sum_probs=44.4
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--CCE--EEEEEeCChhHHHHHHHHhccC
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--EHA--LTIEVTGDPGKMVAVQRNLSKF 216 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs--~~s--l~iE~TG~~~KIdafi~~L~~f 216 (472)
++.+.|.++.+.-..|+.....-||+|++.. +++ .+|+..=.-.++..|-..|+.+
T Consensus 3 i~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~ 62 (80)
T cd04098 3 IYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVH 62 (80)
T ss_pred EEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhh
Confidence 4677888888888899999999999999543 345 6777777788888888888753
No 422
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=26.24 E-value=1.5e+02 Score=31.56 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=31.4
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeec
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~T 115 (472)
--|-.+-+..||+|-+|..+|+-|.+|+.+|..-|-
T Consensus 282 tsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~ 317 (377)
T KOG2797|consen 282 TSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPF 317 (377)
T ss_pred eeEEEEeecCCchHHHHHHHHHhhhceeeeeecccc
Confidence 345555899999999999999999999999998873
No 423
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=25.80 E-value=2.2e+02 Score=24.89 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=39.1
Q ss_pred eC-ChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEeCC-CCCHH-HHHHHHHhcCcEEEEecCCEEEE
Q 012043 126 SG-TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGD-TSTWP-EIMWLVDIFRAKVVDISEHALTI 197 (472)
Q Consensus 126 ~g-dd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~~~-~~~r~-eI~~l~~~FrAkIVDvs~~sl~i 197 (472)
+| ++..++++-.+|+ .|||.=|||.-+ ++++. -+.+|++..+|.+|++=...+++
T Consensus 25 ~Glt~~vi~ei~~aL~-----------------~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~~~vl 82 (95)
T TIGR00253 25 NGLTEGVIKEIEQALE-----------------HRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGKTIVL 82 (95)
T ss_pred CCCCHHHHHHHHHHHH-----------------hCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEccEEEE
Confidence 45 6778888888883 467665555422 23443 56789999999999998777776
No 424
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=25.35 E-value=1.2e+02 Score=30.16 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 324 ~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d 387 (472)
.|.-|..|...+...||.|++-.+.-.-... +.+ -+.+-+.+.+++..|+.+.||.+|.+
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~---v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNNP---VEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS----EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCCC---ccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 5888999999999999999987665443221 222 22234468889999999999999975
No 425
>PRK14639 hypothetical protein; Provisional
Probab=25.30 E-value=3.6e+02 Score=24.89 Aligned_cols=94 Identities=16% Similarity=0.301 Sum_probs=64.8
Q ss_pred HHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhhHHHHHHHHhcCceeeEEEe----cC-Cchhhhhhe-------
Q 012043 98 GVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL------- 161 (472)
Q Consensus 98 gLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----d~~ieQI~kQL~KLvdVikV~d----lt-~~~~V~REL------- 161 (472)
-+....||-+-.+.+.....+.+++|.++.+ -+..+++.++|..++|+..... |. ..|-++|.|
T Consensus 5 p~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~ 84 (140)
T PRK14639 5 ALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHFA 84 (140)
T ss_pred HhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHHHH
Confidence 3456789999999988877777788888743 3567889999999888653210 10 133344444
Q ss_pred ----eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 012043 162 ----MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (472)
Q Consensus 162 ----aLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~T 200 (472)
-.+||+... -+.|.|+++++..+.+++|..
T Consensus 85 r~~G~~v~v~l~~---------~~~~~G~L~~~~~~~i~l~~~ 118 (140)
T PRK14639 85 KSIGELVKITTNE---------KEKFEGKIVSVDDENITLENL 118 (140)
T ss_pred HhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEEc
Confidence 246665532 257889999999999999863
No 426
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=25.20 E-value=57 Score=32.83 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=23.7
Q ss_pred cceeeeeccccEEEEecCCCCCCccccc
Q 012043 13 LSHCFITKSCDFVLFWRPPSQGRTSFSS 40 (472)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (472)
|.+|-+-.+-|-+++|.||.+.||-|.+
T Consensus 65 lp~nvL~~~~~~~vWy~p~~~R~v~F~~ 92 (228)
T TIGR03737 65 LDPNVLALSPGLMVWWTPAATRRVFFQS 92 (228)
T ss_pred cCccEEEeCCCeEEEEecCceEEEEEec
Confidence 5566667778999999999999999973
No 427
>PRK13558 bacterio-opsin activator; Provisional
Probab=24.95 E-value=9.6e+02 Score=26.48 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=91.8
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhh
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~ 158 (472)
..+.+-+.+..-.|.+++.-+ |..|+--.+.++.+.+. +-+.+.|++ .+.+...|.---.|..+..++..+
T Consensus 450 ~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--- 521 (665)
T PRK13558 450 LELEVELSDPDLFLVELAAAT---DCRLEYRGSIADDDGGVLVLFTVPGDD--ATALVDAAADYDAVQDVRVLVSTD--- 521 (665)
T ss_pred EEEEEEECCCcchHHHHhhhc---CcEEEEEeEEEcCCCCEEEEEEEeCCC--HHHHHHhhhccCCcceEEEEEecC---
Confidence 477888888888999877654 77777666667766654 555677764 245556666666665555543322
Q ss_pred hheeeEEEeCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEE-eCChhHHHHHHHHhccCC-cEEEeecc
Q 012043 159 RELMLIKLNGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEV-TGDPGKMVAVQRNLSKFG-IKELARTG 225 (472)
Q Consensus 159 RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDv--s~~sl~iE~-TG~~~KIdafi~~L~~fG-IlEvaRTG 225 (472)
.-.|+++..+.. .+......+++.|.++ .++..++.+ .++.+.+..+++.|+... =.++.+-+
T Consensus 522 -~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (665)
T PRK13558 522 -DECLVEFTLSGD---SLVRLLSERGGRVQDMHADRDRLELTVEVPTEAAGRAVVETLRDRYAGAELVSYT 588 (665)
T ss_pred -CceEEEEEecCC---cHhHhhHhcCCEEEEEEEeCCeEEEEEEcCCCccHHHHHHHHHhhcCCcEEEEEE
Confidence 247888876542 6888889999999876 566777887 678899999999888643 33444433
No 428
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=24.91 E-value=1.3e+02 Score=24.34 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=45.2
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCC--E--EEEEEeCChhHHHHHHHHhccC
Q 012043 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEH--A--LTIEVTGDPGKMVAVQRNLSKF 216 (472)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~--s--l~iE~TG~~~KIdafi~~L~~f 216 (472)
++.+.|.++.+.-..|+..+..-||+|++.... + ..|.......++..|...|+.+
T Consensus 3 i~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~ 62 (80)
T cd04096 3 IYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSA 62 (80)
T ss_pred EEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhh
Confidence 456788888778889999999999999977642 3 7788888888888888888753
No 429
>PRK14634 hypothetical protein; Provisional
Probab=24.73 E-value=5.9e+02 Score=23.92 Aligned_cols=106 Identities=8% Similarity=0.189 Sum_probs=71.4
Q ss_pred chHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhhHHHHHHHHhcCceeeEEE----ecC-Cchhhh
Q 012043 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVE----DIS-NEPHVE 158 (472)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------d~~ieQI~kQL~KLvdVikV~----dlt-~~~~V~ 158 (472)
.-+-..+..+....||-+..+.+.......++.|.++.+ -+..+.+-++|..++|+.... .|. ..|-++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 345566777788999999999987766666788888732 245788899999999865321 111 133344
Q ss_pred hhee-----------eEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 012043 159 RELM-----------LIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (472)
Q Consensus 159 RELa-----------LIKV~~~--~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~ 202 (472)
|.|- ++||+.. ... -+.|.|++.++..+.+++++-|.
T Consensus 87 RpL~~~~~f~r~~G~~V~V~l~~~~~~-------~k~~~G~L~~~~~~~v~l~~~~~ 136 (155)
T PRK14634 87 DQLSSDRDFQTFRGFPVEVSHRDDDGS-------EQRLEGLLLERNEDHLQINIRGR 136 (155)
T ss_pred CcCCCHHHHHHhCCCeEEEEEecCCCC-------eEEEEEEEEEEeCCEEEEEECCE
Confidence 4442 3555442 122 25789999999999999998654
No 430
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=24.41 E-value=4.1e+02 Score=30.14 Aligned_cols=152 Identities=12% Similarity=0.136 Sum_probs=99.5
Q ss_pred HHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhh--------eeeEEEe
Q 012043 96 IAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERE--------LMLIKLN 167 (472)
Q Consensus 96 IagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RE--------LaLIKV~ 167 (472)
+..-+.|---+=-||.+.++++.+-+.+---| +-.++-++.+|.+- =+++. ++.-..++|| ++-+.|.
T Consensus 327 l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~G-elHL~il~e~lrre--g~e~~-~~~P~V~yrei~g~llEPi~~~~i~ 402 (594)
T TIGR01394 327 IRDRLMRELETNVALRVEDTESADKFEVSGRG-ELHLSILIETMRRE--GFELQ-VGRPQVIYKEIDGKKLEPIEELTID 402 (594)
T ss_pred HHHHHHHhhccCCeEEEEEecCCCeEEEEEEC-HHHHHHHHHHHhcc--CceEE-EeCCEEEEEeCCCeEECCEEEEEEE
Confidence 33334444444457888888887766666667 55678888888765 12222 3334455666 4567778
Q ss_pred CCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCCCCccccccc
Q 012043 168 GDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFS 244 (472)
Q Consensus 168 ~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~~~~~~~~~~~ 244 (472)
++.+.-..|++.+..-||+++++.. +...|+..-....+..|-..|+. +.+|.-.++..|.+|.
T Consensus 403 vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s-------------~T~G~g~~~~~f~~Y~ 469 (594)
T TIGR01394 403 VPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLT-------------DTRGTGIMNHVFDEYE 469 (594)
T ss_pred echHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHh-------------hcCCeEEEEEEeccce
Confidence 8888888999999999999999977 36889999999999999888875 5666555555554433
Q ss_pred ccCCchhhhhcccccccccccc
Q 012043 245 AASYPDLEEKKRTGIFIPETNQ 266 (472)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~ 266 (472)
... +++ ......++++.-.+
T Consensus 470 ~~~-~~i-~~~~~g~~~~~~~g 489 (594)
T TIGR01394 470 PWK-GEI-ETRRNGSLVSMEDG 489 (594)
T ss_pred eCC-CcC-CCCCceeEEECCCC
Confidence 322 333 23344444444433
No 431
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=43 Score=34.46 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=45.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d 387 (472)
+-+..+ |-=|+.|+..|..+||+|.+...+--- .+.|.+-+++ .+.+.+|+.-|+.+.||..|++
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~le~~P---~~~vev~~~~-lEk~qkL~q~L~e~edV~~iy~ 271 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGLEFIP---LEEVEVDVPA-LEKIQKLIQALYENEDVMFIYD 271 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeecccccccc---CCccccCccc-hHHHHHHHHHHhhchhHHHHhh
Confidence 444554 556999999999999999976554332 2334444443 6678888888888888887754
No 432
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.85 E-value=92 Score=36.07 Aligned_cols=48 Identities=31% Similarity=0.286 Sum_probs=40.3
Q ss_pred CcccCcccccccceeeeeccccEEEEecCCCCCCcccccccccccceeeeeeccCC
Q 012043 2 AATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGS 57 (472)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (472)
.+|||.-|.+|- -.|.|+| .|||--|+-|+|+..||+......++-.+
T Consensus 795 ggtmtss~~~~~--~~~~~gs------s~~sv~r~vf~s~~~vpgfa~~~~~n~~s 842 (864)
T KOG2219|consen 795 GGTMTSSPRMNP--FRIVKGS------SPGSVRRTVFTSSSSVPGFAGHYSANLRS 842 (864)
T ss_pred CceeccCCCCCC--CccCCCC------CCCccccceeeccccCCCccceeeccccc
Confidence 478999998886 4578888 49999999999999999999888777444
No 433
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=23.74 E-value=4.1e+02 Score=26.76 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.2
Q ss_pred EEEEEEeCChhHHHHHHHHhccCCcE
Q 012043 194 ALTIEVTGDPGKMVAVQRNLSKFGIK 219 (472)
Q Consensus 194 sl~iE~TG~~~KIdafi~~L~~fGIl 219 (472)
-++|+.+|.+.-++..++.|++.|.+
T Consensus 240 d~vid~~g~~~~~~~~~~~l~~~G~~ 265 (355)
T cd08230 240 DLIIEATGVPPLAFEALPALAPNGVV 265 (355)
T ss_pred CEEEECcCCHHHHHHHHHHccCCcEE
Confidence 48999999988899999999999954
No 434
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=23.59 E-value=1.2e+02 Score=32.41 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=35.6
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC
Q 012043 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK 352 (472)
Q Consensus 309 ~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~ 352 (472)
..++.+.-|-..-+..||+|..|-.+|+-|.+|+.+|..-|-..
T Consensus 276 t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~ 319 (377)
T KOG2797|consen 276 TDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHN 319 (377)
T ss_pred CCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccC
Confidence 33444555555689999999999999999999999999988443
No 435
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=23.14 E-value=37 Score=34.27 Aligned_cols=19 Identities=37% Similarity=0.884 Sum_probs=14.9
Q ss_pred ccccEEEEecCCCCCCccc
Q 012043 20 KSCDFVLFWRPPSQGRTSF 38 (472)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (472)
++.|.+|||-||..|.|++
T Consensus 48 ~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp S---EEEEESSTTSSHHHH
T ss_pred CCcceEEEECCCccchhHH
Confidence 4578999999999999998
No 436
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=22.68 E-value=1.2e+02 Score=25.19 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=45.3
Q ss_pred eeEEEeCCCCCHHHHHHHHHhcCcEEEEec---CCEEEEEEeCChhHHHHHHHHhcc
Q 012043 162 MLIKLNGDTSTWPEIMWLVDIFRAKVVDIS---EHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 162 aLIKV~~~~~~r~eI~~l~~~FrAkIVDvs---~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
+.+.|.++.+.-..|+......||++.+.. .+...|+......++..|...|+.
T Consensus 7 ~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~ 63 (89)
T PF00679_consen 7 MSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRS 63 (89)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhc
Confidence 456677777788899999999999998875 468999999999999999988875
No 437
>PRK14638 hypothetical protein; Provisional
Probab=22.22 E-value=6.5e+02 Score=23.51 Aligned_cols=101 Identities=12% Similarity=0.224 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-----hhhHHHHHHHHhcCceeeEEEe----cC-Cchhhhhhe
Q 012043 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (472)
Q Consensus 92 VL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-----d~~ieQI~kQL~KLvdVikV~d----lt-~~~~V~REL 161 (472)
+-..+.-+....||-+..+.+........+++.++.+ -+..+.+-++|.+++|+..... |. ..|-++|.|
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL 89 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPL 89 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCC
Confidence 3345666778999999999988776666788888743 2567889999999998653210 00 033344444
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 012043 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (472)
Q Consensus 162 a-----------LIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG 201 (472)
- .+||+... -+.|.|++.++..+.++++.-|
T Consensus 90 ~~~~~f~r~~G~~v~V~~~~---------~k~~~G~L~~~~~~~i~l~~~~ 131 (150)
T PRK14638 90 RGPKDYVRFTGKLAKIVTKD---------GKTFIGRIESFVDGTITISDEK 131 (150)
T ss_pred CCHHHHHHhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEECC
Confidence 2 35666542 2668899999999999998543
No 438
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=21.73 E-value=7.4 Score=39.76 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=56.7
Q ss_pred EEEEEEcCcchHHHH-HHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 81 TISVFVGDESGIINR-IAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 81 tISIlVeN~pGVL~R-IagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
.-.+.++|++|+..+ |+|+...-++|+..+.+...-+...+.+...+|...+++++..+++.-....|..
T Consensus 181 a~~i~~~h~lGltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y 251 (262)
T COG1760 181 APEIAMEHNLGLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKY 251 (262)
T ss_pred ccHHHHhcCCCceehhhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhh
Confidence 445677888999999 9999999999999999998877777777777777788888877777666555543
No 439
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.58 E-value=2.1e+02 Score=21.70 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCcEEEEecCC---EEEEEEeCChhHHHHHHHHh
Q 012043 174 PEIMWLVDIFRAKVVDISEH---ALTIEVTGDPGKMVAVQRNL 213 (472)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~---sl~iE~TG~~~KIdafi~~L 213 (472)
..|.+|.+.++++| ++.+. .=.+.++|+++.+....+.+
T Consensus 20 ~~i~~i~~~~g~~I-~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 20 SNIRKIMEETGVKI-RFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CcHHHHHHHhCCEE-EcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 46778888999995 55542 45679999999998887765
No 440
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=20.75 E-value=2.9e+02 Score=30.49 Aligned_cols=77 Identities=16% Similarity=0.357 Sum_probs=60.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEEecCCchHHH
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLidVi~V~dlt~~~~V~ 395 (472)
|.|+.+|+-|+.--+..|..-|++|..-+.+ .-+-||-+-.+. +-+.++.+...|+.+--|..|..+.-.|.=.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi-----d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~mPseR 77 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI-----DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPWMPSER 77 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee-----cCCCeEEEeccccCHHHHHHHHHHHhcCCCccceeeecCCcchh
Confidence 6789999999999999999999999998877 345567777764 6678999999999998888777666544433
Q ss_pred Hhh
Q 012043 396 REL 398 (472)
Q Consensus 396 REL 398 (472)
|-+
T Consensus 78 ~hl 80 (511)
T COG3283 78 EHL 80 (511)
T ss_pred HhH
Confidence 333
No 441
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=20.74 E-value=98 Score=34.01 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=46.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C--ChHHHHHHHHHHhcccc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G--TDESIGKLVQLLHKLID 381 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-g--de~~ieQIvkQL~KLid 381 (472)
-+++.+.++||-.++++.+...+++++-++--...-..+++.-..++. . ..+...||..++.|..|
T Consensus 375 ~l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~~~~~~ql~~~~~~~~d 443 (457)
T KOG1250|consen 375 RLLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEGKEHEQQLKQKLKKAYD 443 (457)
T ss_pred eeeeecccCCCcchhhHHhhcccccchhhhhhhHHHhhhheEEEEEEEEecccHHHHHHHHHhhhheec
Confidence 488889999999999999999999999998877655555544433333 2 33345555555555444
No 442
>PRK14435 acylphosphatase; Provisional
Probab=20.70 E-value=1.2e+02 Score=25.84 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 117 DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 117 d~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
..+.+.|.+.|+++.+++.++.|.+-..--+|++++.
T Consensus 38 ~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 74 (90)
T PRK14435 38 DDGSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVSV 74 (90)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 3467999999999999999999988766556665543
No 443
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=20.58 E-value=2.9e+02 Score=30.41 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=50.7
Q ss_pred EEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhhHHHHHHHHhcCc
Q 012043 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLV 143 (472)
Q Consensus 80 htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gdd~~ieQI~kQL~KLv 143 (472)
-.+.+...|++|-|+|+..+|...+.||.-|---+++..+ . +-+-++.+...+.|+++-|..-.
T Consensus 37 ~~~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~~ 103 (461)
T KOG3820|consen 37 ISLIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQNH 103 (461)
T ss_pred EEEEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHhc
Confidence 3467778999999999999999999999999888877663 2 44456677778888888776553
No 444
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=20.46 E-value=2.3e+02 Score=31.00 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhccC--ceeeeEeeeecC-CCcEEEEEEeC-ChhhHHHHHHHHhcC
Q 012043 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVSG-TERVLRQVVEQLNKL 142 (472)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLtVg~Te-d~~~iTIVV~g-dd~~ieQI~kQL~KL 142 (472)
.|+|+|+....-..| |.|+.+.+|.+. +++.-.|.|.+ |++.+++|..||.++
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~~ 71 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELIDL 71 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHHc
Confidence 689999988887766 999999999765 55666666664 678899999999876
No 445
>PRK14421 acylphosphatase; Provisional
Probab=20.19 E-value=1.5e+02 Score=25.93 Aligned_cols=39 Identities=8% Similarity=0.239 Sum_probs=29.9
Q ss_pred cCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 115 NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 115 Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
+...|.+.|.+.|+++.++++++.|.+--.-.+|+.++.
T Consensus 38 N~~dG~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~~ 76 (99)
T PRK14421 38 NRRDGSVEALFAGPADAVAEMIARCRRGPSAARVDAVED 76 (99)
T ss_pred ECCCCEEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 344567999999999999999999987655555555543
No 446
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=4e+02 Score=23.73 Aligned_cols=70 Identities=26% Similarity=0.195 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhcccceEEEEecCCchHHHHhhh-------eeEEecCcccHHH----HHHHHHHhCcEEEEecCChhh
Q 012043 365 TDESIGKLVQLLHKLIDLHEVQDITHLPFAERELI-------LIKIAVNTAARRD----VLDIAKIFRARAVDVSDHTIT 433 (472)
Q Consensus 365 de~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~-------LiKV~~~~~~r~e----I~~ia~iFrakIVDvs~~sit 433 (472)
+-.+...+.++-+.+-.|+.|=.-.=.+.|-.|+- ||||+.-.+.|.+ ...||+.-+|..|++-..+++
T Consensus 3 t~kq~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~~v 82 (97)
T COG1534 3 TGKQKRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKTLV 82 (97)
T ss_pred cHHHHHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeEEE
Q ss_pred h
Q 012043 434 L 434 (472)
Q Consensus 434 i 434 (472)
+
T Consensus 83 l 83 (97)
T COG1534 83 L 83 (97)
T ss_pred E
No 447
>PRK14449 acylphosphatase; Provisional
Probab=20.10 E-value=1.8e+02 Score=24.65 Aligned_cols=37 Identities=11% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 116 VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 116 ed~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
...|.+.|.+.|+++.+++.++.|.+=..-.+|++++
T Consensus 38 ~~dG~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~ 74 (90)
T PRK14449 38 LYDGSVEVVAEGDEENIKELINFIKTGLRWARVDNVE 74 (90)
T ss_pred CCCCeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEE
Confidence 3445799999999999999999998755556666544
Done!