Query 012043
Match_columns 472
No_of_seqs 349 out of 2234
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 20:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgc_A Acetolactate synthase, 100.0 1.3E-51 4.5E-56 388.7 20.3 158 77-235 27-188 (193)
2 2pc6_A Probable acetolactate s 100.0 5.7E-51 1.9E-55 376.0 17.9 158 77-234 2-161 (165)
3 2f1f_A Acetolactate synthase i 100.0 3E-50 1E-54 370.7 19.1 158 77-234 1-161 (164)
4 2fgc_A Acetolactate synthase, 100.0 1.1E-49 3.6E-54 375.7 15.8 159 297-460 16-188 (193)
5 2pc6_A Probable acetolactate s 100.0 2.5E-47 8.7E-52 351.7 13.7 149 311-459 1-161 (165)
6 2f1f_A Acetolactate synthase i 100.0 2.5E-46 8.6E-51 344.6 14.9 148 312-459 1-161 (164)
7 1u8s_A Glycine cleavage system 99.2 8.8E-10 3E-14 101.0 18.3 64 79-142 6-69 (192)
8 2f06_A Conserved hypothetical 99.0 8.3E-09 2.9E-13 90.2 15.3 125 76-218 3-133 (144)
9 2ko1_A CTR148A, GTP pyrophosph 98.9 1.5E-08 5.2E-13 80.4 11.3 77 314-392 5-82 (88)
10 2f06_A Conserved hypothetical 98.9 2.4E-08 8.1E-13 87.3 13.2 100 310-425 2-101 (144)
11 2ko1_A CTR148A, GTP pyrophosph 98.7 5.8E-08 2E-12 77.0 10.3 78 78-155 4-82 (88)
12 1zpv_A ACT domain protein; str 98.6 9.8E-08 3.3E-12 76.8 7.9 68 313-382 4-72 (91)
13 1u8s_A Glycine cleavage system 98.6 3.5E-07 1.2E-11 83.7 11.3 115 314-431 6-128 (192)
14 1zpv_A ACT domain protein; str 98.5 1.4E-07 4.6E-12 76.0 6.3 71 78-148 4-75 (91)
15 2nyi_A Unknown protein; protei 98.2 4.3E-05 1.5E-09 70.6 16.9 79 313-392 92-179 (195)
16 1y7p_A Hypothetical protein AF 98.0 2.2E-05 7.5E-10 75.7 9.8 81 313-395 3-86 (223)
17 1y7p_A Hypothetical protein AF 97.7 7.6E-05 2.6E-09 72.0 9.0 79 78-158 3-86 (223)
18 2jhe_A Transcription regulator 97.2 0.0041 1.4E-07 53.9 12.3 71 316-391 2-73 (190)
19 3mtj_A Homoserine dehydrogenas 97.1 0.00094 3.2E-08 69.8 8.6 71 313-383 358-430 (444)
20 2jhe_A Transcription regulator 97.1 0.0041 1.4E-07 53.9 11.4 69 81-152 2-71 (190)
21 3l76_A Aspartokinase; alloster 97.1 0.028 9.4E-07 60.6 19.9 219 85-381 277-517 (600)
22 1sc6_A PGDH, D-3-phosphoglycer 97.1 0.0018 6E-08 66.7 10.1 74 78-151 330-403 (404)
23 2nyi_A Unknown protein; protei 97.0 0.0018 6E-08 59.8 8.3 67 75-142 89-162 (195)
24 1sc6_A PGDH, D-3-phosphoglycer 97.0 0.0043 1.5E-07 63.9 11.6 73 314-388 331-403 (404)
25 2re1_A Aspartokinase, alpha an 96.9 0.0053 1.8E-07 55.2 10.4 129 80-217 26-165 (167)
26 3mtj_A Homoserine dehydrogenas 96.8 0.0022 7.6E-08 67.0 8.0 73 74-146 354-430 (444)
27 3o1l_A Formyltetrahydrofolate 96.6 0.0046 1.6E-07 61.7 8.3 66 76-141 19-88 (302)
28 3lou_A Formyltetrahydrofolate 96.5 0.0046 1.6E-07 61.4 7.7 66 76-141 7-78 (292)
29 3n0v_A Formyltetrahydrofolate 96.5 0.005 1.7E-07 60.9 7.9 65 77-141 6-73 (286)
30 1ygy_A PGDH, D-3-phosphoglycer 96.5 0.004 1.4E-07 65.8 7.1 71 79-151 454-526 (529)
31 3obi_A Formyltetrahydrofolate 96.4 0.0065 2.2E-07 60.1 7.9 64 78-141 5-72 (288)
32 3o1l_A Formyltetrahydrofolate 96.4 0.0074 2.5E-07 60.2 8.4 69 310-378 18-88 (302)
33 3k5p_A D-3-phosphoglycerate de 96.4 0.013 4.4E-07 60.9 10.3 73 79-151 343-415 (416)
34 1ygy_A PGDH, D-3-phosphoglycer 96.4 0.0059 2E-07 64.5 7.9 73 314-388 454-526 (529)
35 3nrb_A Formyltetrahydrofolate 96.3 0.0074 2.5E-07 59.7 7.6 62 78-139 6-69 (287)
36 3lou_A Formyltetrahydrofolate 96.2 0.01 3.6E-07 58.8 8.1 69 310-378 6-78 (292)
37 3obi_A Formyltetrahydrofolate 96.2 0.011 3.8E-07 58.5 8.0 125 314-443 6-139 (288)
38 3p96_A Phosphoserine phosphata 96.1 0.041 1.4E-06 55.2 12.0 139 78-218 11-171 (415)
39 3n0v_A Formyltetrahydrofolate 96.1 0.014 4.7E-07 57.7 8.3 66 312-377 6-72 (286)
40 3nrb_A Formyltetrahydrofolate 96.0 0.017 5.7E-07 57.2 8.2 126 313-443 6-138 (287)
41 2re1_A Aspartokinase, alpha an 95.8 0.023 8E-07 50.9 7.9 105 315-427 26-137 (167)
42 3k5p_A D-3-phosphoglycerate de 95.8 0.028 9.6E-07 58.4 9.3 73 314-388 343-415 (416)
43 2qmx_A Prephenate dehydratase; 95.3 0.11 3.7E-06 51.5 11.2 73 313-385 199-274 (283)
44 2dtj_A Aspartokinase; protein- 95.0 0.26 8.9E-06 44.7 11.8 129 81-217 17-157 (178)
45 2qmx_A Prephenate dehydratase; 94.7 0.22 7.6E-06 49.2 11.4 71 78-148 199-274 (283)
46 3p96_A Phosphoserine phosphata 94.7 0.089 3.1E-06 52.7 8.8 115 313-429 11-135 (415)
47 3mwb_A Prephenate dehydratase; 94.6 0.12 4.2E-06 51.8 9.6 75 310-384 197-275 (313)
48 3s1t_A Aspartokinase; ACT doma 94.4 0.12 4E-06 47.4 8.1 126 85-217 23-158 (181)
49 2dt9_A Aspartokinase; protein- 94.1 0.14 4.9E-06 45.7 8.0 120 86-215 24-154 (167)
50 3s1t_A Aspartokinase; ACT doma 94.1 0.21 7.3E-06 45.7 9.1 102 320-428 23-131 (181)
51 3mwb_A Prephenate dehydratase; 94.0 0.22 7.7E-06 49.9 9.9 69 76-144 198-272 (313)
52 3mah_A Aspartokinase; aspartat 94.0 0.18 6.2E-06 44.6 8.3 50 322-378 29-78 (157)
53 2dtj_A Aspartokinase; protein- 93.7 0.16 5.4E-06 46.1 7.5 103 316-427 17-129 (178)
54 2qmw_A PDT, prephenate dehydra 93.4 0.21 7E-06 49.1 8.3 70 78-148 185-262 (267)
55 3mah_A Aspartokinase; aspartat 93.4 0.21 7.3E-06 44.2 7.7 111 87-214 29-146 (157)
56 2dt9_A Aspartokinase; protein- 93.2 0.18 6E-06 45.1 6.9 96 321-424 24-126 (167)
57 2qmw_A PDT, prephenate dehydra 92.8 0.37 1.3E-05 47.3 9.0 72 314-385 186-262 (267)
58 3luy_A Probable chorismate mut 92.8 0.41 1.4E-05 48.4 9.5 71 315-385 207-282 (329)
59 1phz_A Protein (phenylalanine 92.5 0.27 9.4E-06 51.4 8.0 73 77-149 32-109 (429)
60 3ab4_A Aspartokinase; aspartat 91.6 1 3.5E-05 46.1 11.0 129 80-217 265-406 (421)
61 4go7_X Aspartokinase; transfer 91.6 0.25 8.7E-06 46.4 6.0 73 302-378 28-102 (200)
62 1phz_A Protein (phenylalanine 91.3 0.58 2E-05 49.0 8.8 77 310-386 30-109 (429)
63 3luy_A Probable chorismate mut 90.9 0.85 2.9E-05 46.0 9.4 69 80-148 207-282 (329)
64 3ab4_A Aspartokinase; aspartat 90.9 1 3.4E-05 46.1 10.1 102 316-424 266-375 (421)
65 4go7_X Aspartokinase; transfer 89.2 0.37 1.3E-05 45.3 4.9 125 85-218 42-178 (200)
66 2nzc_A Hypothetical protein; s 89.2 2.2 7.6E-05 35.5 9.0 70 313-383 6-76 (86)
67 1rwu_A Hypothetical UPF0250 pr 87.8 3.5 0.00012 35.5 9.6 70 313-385 35-108 (109)
68 2nzc_A Hypothetical protein; s 86.2 3.4 0.00012 34.4 8.3 70 77-146 5-76 (86)
69 2h9z_A Hypothetical protein HP 85.2 2.8 9.4E-05 34.4 7.3 70 313-385 14-85 (86)
70 2qrr_A Methionine import ATP-b 84.2 2.9 9.8E-05 34.5 7.1 60 163-222 25-97 (101)
71 3tvi_A Aspartokinase; structur 83.0 7 0.00024 40.7 11.0 116 87-213 309-433 (446)
72 3c1m_A Probable aspartokinase; 82.6 7 0.00024 40.7 10.8 124 80-214 319-464 (473)
73 2qsw_A Methionine import ATP-b 82.3 2.7 9.3E-05 34.6 6.2 60 163-222 25-97 (100)
74 3ced_A Methionine import ATP-b 81.7 2 7E-05 35.6 5.2 61 163-223 22-96 (98)
75 3l76_A Aspartokinase; alloster 81.7 3.6 0.00012 44.3 8.5 127 85-218 451-590 (600)
76 3dhx_A Methionine import ATP-b 79.2 3.9 0.00013 34.2 6.2 60 162-221 22-94 (106)
77 3c1m_A Probable aspartokinase; 78.3 2 6.9E-05 44.7 5.1 51 321-377 328-378 (473)
78 3trg_A Acylphosphatase; fatty 77.1 3.5 0.00012 34.4 5.3 45 171-215 26-72 (98)
79 2lqj_A Mg2+ transport protein; 74.4 16 0.00055 30.3 8.6 73 314-387 8-85 (94)
80 2rjz_A PILO protein; structura 71.4 7.1 0.00024 34.7 6.1 65 89-153 44-113 (147)
81 2cdq_A Aspartokinase; aspartat 71.3 14 0.00049 39.0 9.4 69 322-406 352-428 (510)
82 3tvi_A Aspartokinase; structur 70.8 7.1 0.00024 40.7 6.9 94 322-428 309-409 (446)
83 2cdq_A Aspartokinase; aspartat 69.7 22 0.00074 37.7 10.4 114 87-214 352-479 (510)
84 1rwu_A Hypothetical UPF0250 pr 69.6 26 0.0009 30.0 9.0 67 79-148 36-108 (109)
85 2lqj_A Mg2+ transport protein; 68.7 26 0.00087 29.1 8.6 74 75-149 4-84 (94)
86 2fhm_A Probable acylphosphatas 68.5 8.2 0.00028 31.5 5.5 45 171-215 16-62 (91)
87 1ulr_A Putative acylphosphatas 68.1 9.4 0.00032 31.0 5.7 44 171-214 16-61 (88)
88 1gtd_A MTH169; synthetase, FGA 66.2 9.4 0.00032 31.0 5.3 55 315-376 3-66 (85)
89 1gtd_A MTH169; synthetase, FGA 65.4 8.7 0.0003 31.2 5.0 55 80-139 3-66 (85)
90 1w2i_A Acylphosphatase; hydrol 63.9 9.5 0.00032 31.2 5.0 44 171-214 18-63 (91)
91 1q5y_A NIKR, nickel responsive 63.2 51 0.0017 26.5 9.2 72 314-386 5-77 (85)
92 2dgb_A Hypothetical protein PU 63.0 13 0.00046 30.0 5.7 44 80-128 4-51 (84)
93 1urr_A CG18505 protein; acylph 63.0 11 0.00039 31.4 5.4 45 171-215 25-71 (102)
94 2bjd_A Acylphosphatase; hypert 62.3 11 0.00038 31.6 5.2 45 171-215 28-74 (101)
95 2h9z_A Hypothetical protein HP 61.9 19 0.00066 29.3 6.4 67 79-148 15-85 (86)
96 2dgb_A Hypothetical protein PU 61.9 16 0.00056 29.5 6.0 44 315-365 4-51 (84)
97 2gv1_A Probable acylphosphatas 61.3 11 0.00037 30.9 4.9 43 171-213 18-62 (92)
98 2wvf_A Hpnikr, putative nickel 60.8 88 0.003 27.7 11.1 77 311-388 62-139 (148)
99 1q5y_A NIKR, nickel responsive 60.2 42 0.0015 27.0 8.2 70 80-149 6-77 (85)
100 2vh7_A Acylphosphatase-1; hydr 59.5 12 0.00042 31.0 5.0 44 171-214 22-67 (99)
101 3mgj_A Uncharacterized protein 59.5 21 0.00072 31.3 6.6 54 325-379 15-71 (118)
102 2wvf_A Hpnikr, putative nickel 59.2 43 0.0015 29.8 8.8 73 78-150 64-138 (148)
103 2hza_A Nickel-responsive regul 57.0 46 0.0016 28.8 8.4 73 78-150 52-126 (133)
104 1aps_A Acylphosphatase; hydrol 56.9 11 0.00038 31.2 4.2 45 171-215 21-67 (98)
105 1tdj_A Biosynthetic threonine 56.1 23 0.00079 37.6 7.5 77 313-394 337-415 (514)
106 3mgj_A Uncharacterized protein 54.7 24 0.00082 31.0 6.1 53 90-142 15-71 (118)
107 1t4a_A PURS; tetramer, complex 54.4 24 0.00083 28.4 5.8 54 316-376 3-65 (84)
108 2hza_A Nickel-responsive regul 53.1 1.1E+02 0.0038 26.4 10.6 76 311-387 50-126 (133)
109 2lxf_A Uncharacterized protein 52.6 14 0.00047 32.3 4.3 45 171-215 48-94 (121)
110 1t4a_A PURS; tetramer, complex 52.1 24 0.00082 28.5 5.4 54 81-139 3-65 (84)
111 2rjz_A PILO protein; structura 51.2 35 0.0012 30.2 6.8 68 323-390 43-113 (147)
112 2zw2_A Putative uncharacterize 49.0 35 0.0012 28.1 6.0 56 314-376 5-70 (92)
113 2zw2_A Putative uncharacterize 48.9 33 0.0011 28.2 5.9 56 79-139 5-70 (92)
114 2bj7_A Nickel responsive regul 46.4 93 0.0032 27.0 8.7 73 78-150 54-128 (138)
115 1o51_A Hypothetical protein TM 42.7 19 0.00064 31.0 3.5 45 182-231 62-107 (114)
116 1vq3_A Phosphoribosylformylgly 42.6 66 0.0023 26.9 6.8 55 80-139 16-80 (94)
117 1vq3_A Phosphoribosylformylgly 41.7 76 0.0026 26.5 7.0 55 315-376 16-80 (94)
118 2yx5_A UPF0062 protein MJ1593; 41.6 27 0.00093 28.0 4.2 54 316-376 3-66 (83)
119 2j0w_A Lysine-sensitive aspart 41.1 27 0.00094 36.1 5.1 77 314-406 306-394 (449)
120 2hh2_A KH-type splicing regula 40.2 47 0.0016 27.6 5.6 42 174-216 27-76 (107)
121 2bj7_A Nickel responsive regul 40.0 1.8E+02 0.0063 25.1 10.9 77 310-387 51-128 (138)
122 2j0w_A Lysine-sensitive aspart 39.7 37 0.0013 35.2 5.9 79 78-170 305-395 (449)
123 2yx5_A UPF0062 protein MJ1593; 37.4 28 0.00096 27.9 3.6 54 81-139 3-66 (83)
124 1tdj_A Biosynthetic threonine 36.6 51 0.0018 35.0 6.4 116 78-218 337-460 (514)
125 1jo0_A Hypothetical protein HI 36.5 1.6E+02 0.0054 24.6 8.2 53 128-197 30-84 (98)
126 2p2r_A Poly(RC)-binding protei 35.8 61 0.0021 24.9 5.2 42 173-215 24-70 (76)
127 2dcl_A Hypothetical UPF0166 pr 34.0 27 0.00094 30.5 3.2 45 182-231 58-103 (127)
128 2jvz_A KH type-splicing, FAR u 33.3 1.8E+02 0.0063 24.7 8.5 42 173-215 110-156 (164)
129 1jo0_A Hypothetical protein HI 33.2 1.4E+02 0.0049 24.9 7.4 35 400-434 46-84 (98)
130 3dhx_A Methionine import ATP-b 33.0 1.4E+02 0.005 24.5 7.4 58 327-385 37-94 (106)
131 1wvn_A Poly(RC)-binding protei 32.1 98 0.0033 24.1 6.0 42 174-216 26-72 (82)
132 1zzk_A Heterogeneous nuclear r 31.0 1E+02 0.0035 24.0 5.9 42 173-215 26-72 (82)
133 1x4n_A FAR upstream element bi 30.7 80 0.0027 25.4 5.3 42 173-215 34-80 (92)
134 1dtj_A RNA-binding neurooncolo 28.8 1.2E+02 0.0042 23.0 5.9 42 173-215 22-71 (76)
135 1j5k_A Heterogeneous nuclear r 27.3 1.1E+02 0.0037 24.4 5.5 42 173-215 33-79 (89)
136 1rq8_A Conserved hypothetical 26.9 1.1E+02 0.0039 25.9 5.8 54 128-198 29-84 (104)
137 3krm_A Insulin-like growth fac 26.8 55 0.0019 28.3 4.0 126 81-215 4-152 (163)
138 1vr9_A CBS domain protein/ACT 26.7 14 0.00046 33.4 0.0 58 317-377 141-198 (213)
139 2hh3_A KH-type splicing regula 26.7 86 0.003 26.2 5.0 42 173-215 30-76 (106)
140 2axy_A Poly(RC)-binding protei 26.6 1E+02 0.0034 23.7 5.0 40 174-214 25-67 (73)
141 1ec6_A RNA-binding protein NOV 25.5 1.6E+02 0.0055 23.1 6.2 41 174-215 23-71 (87)
142 1rq8_A Conserved hypothetical 24.7 1.9E+02 0.0066 24.5 6.8 51 365-434 29-83 (104)
143 2qsw_A Methionine import ATP-b 23.7 2.7E+02 0.0093 22.3 7.4 54 326-380 38-91 (100)
144 1vig_A Vigilin; RNA-binding pr 23.1 80 0.0028 24.2 3.9 40 175-215 26-68 (71)
145 3ced_A Methionine import ATP-b 21.1 3.3E+02 0.011 22.0 7.8 54 326-380 35-89 (98)
146 2qrr_A Methionine import ATP-b 21.0 2.8E+02 0.0095 22.3 6.9 54 326-380 38-91 (101)
147 1we8_A Tudor and KH domain con 20.8 1.4E+02 0.0047 24.5 5.1 42 173-215 34-82 (104)
148 4djd_C C/Fe-SP, corrinoid/iron 20.2 2.5E+02 0.0087 29.4 8.0 128 79-219 91-227 (446)
No 1
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.3e-51 Score=388.67 Aligned_cols=158 Identities=39% Similarity=0.634 Sum_probs=153.3
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCC-
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN- 153 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~- 153 (472)
+|+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+|+|+++.++||.+||+||+||++|.++++
T Consensus 27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~ 106 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL 106 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 47999999999999999999999999999999999999999975 999999999999999999999999999999999
Q ss_pred -chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 012043 154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (472)
Q Consensus 154 -~~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg 232 (472)
.++|+||||||||+++++ |.+|++++++|||+|||+++++++||+||+++|||+|+++|+||||+|++|||.+||.||
T Consensus 107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg 185 (193)
T 2fgc_A 107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW 185 (193)
T ss_dssp GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 012043 233 KLG 235 (472)
Q Consensus 233 ~~~ 235 (472)
+..
T Consensus 186 ~~~ 188 (193)
T 2fgc_A 186 NVK 188 (193)
T ss_dssp CC-
T ss_pred Ccc
Confidence 854
No 2
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=5.7e-51 Score=376.05 Aligned_cols=158 Identities=41% Similarity=0.633 Sum_probs=153.9
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
.|+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+++++++.++||.+||+||+||++|.++++.
T Consensus 2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~ 81 (165)
T 2pc6_A 2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE 81 (165)
T ss_dssp CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 36899999999999999999999999999999999999998874 9999999999999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 012043 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (472)
Q Consensus 155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~Rg~~ 234 (472)
++|+||||||||++++++|.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||.+||.||++
T Consensus 82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~ 161 (165)
T 2pc6_A 82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER 161 (165)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=3e-50 Score=370.67 Aligned_cols=158 Identities=37% Similarity=0.653 Sum_probs=153.5
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHHhcCceeeEEEecCCc
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+++++++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 67999999999999999999999999999999999999998864 9999999999999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 012043 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK 233 (472)
Q Consensus 155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG-IlEvaRTG~iAl~Rg~ 233 (472)
++|+||||||||++++++|.||++++++|||+|||++++++++|+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999997
Q ss_pred C
Q 012043 234 L 234 (472)
Q Consensus 234 ~ 234 (472)
+
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 5
No 4
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.1e-49 Score=375.72 Aligned_cols=159 Identities=35% Similarity=0.555 Sum_probs=144.3
Q ss_pred ccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 012043 297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (472)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL 376 (472)
.|+|||-+.+. .|+|+|+++|+|+||+|+||+++|+||||||+||++++++++++|||||+|+++++.++||.|||
T Consensus 16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL 91 (193)
T 2fgc_A 16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA 91 (193)
T ss_dssp ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHH
T ss_pred chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 58999988554 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceEEEEecCC--chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCC
Q 012043 377 HKLIDLHEVQDITH--LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG 442 (472)
Q Consensus 377 ~KLidVi~V~dlt~--~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyG 442 (472)
+||+||++|.++++ .++|+||||||||+++++ |.+|++++++|||+|||+++++++|| ++|+|||
T Consensus 92 ~KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~g 170 (193)
T 2fgc_A 92 YKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ 170 (193)
T ss_dssp TTSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGG
T ss_pred cCcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhC
Confidence 99999999999999 999999999999999988 99999999999999999999999999 9999999
Q ss_pred cEEEeecceeeeecCCCc
Q 012043 443 ICEVARTGRVALVRESGV 460 (472)
Q Consensus 443 I~EvaRTG~vAl~Rg~~~ 460 (472)
|+|++|||++||.||++.
T Consensus 171 i~E~~RtG~val~Rg~~~ 188 (193)
T 2fgc_A 171 VEEIARTGIVAMNRWNVK 188 (193)
T ss_dssp EEEEEECCCEEEECCCC-
T ss_pred CEEEEccChhheecCCcc
Confidence 999999999999999864
No 5
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=2.5e-47 Score=351.72 Aligned_cols=149 Identities=37% Similarity=0.590 Sum_probs=145.2
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCC
Q 012043 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
|-|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++++++.++||.+||+||+||++|.++++
T Consensus 1 ~~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~ 80 (165)
T 2pc6_A 1 GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSS 80 (165)
T ss_dssp -CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred CceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCCcEEEeecceeeeecCC
Q 012043 391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYGICEVARTGRVALVRES 458 (472)
Q Consensus 391 ~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyGI~EvaRTG~vAl~Rg~ 458 (472)
.++|+||||||||++++.+|.+|++++++|||+|||++++++++| ++|+||||+|++|||.+||.||+
T Consensus 81 ~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~ 160 (165)
T 2pc6_A 81 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE 160 (165)
T ss_dssp SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred cceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCc
Confidence 999999999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 012043 459 G 459 (472)
Q Consensus 459 ~ 459 (472)
+
T Consensus 161 ~ 161 (165)
T 2pc6_A 161 R 161 (165)
T ss_dssp C
T ss_pred c
Confidence 5
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=2.5e-46 Score=344.56 Aligned_cols=148 Identities=34% Similarity=0.557 Sum_probs=144.8
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++|||++++++++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhheeEEecCcccHHHHHHHHHHhCcEEEEecCChhhhh------------HhhccCC-cEEEeecceeeeecCC
Q 012043 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE------------RLLEPYG-ICEVARTGRVALVRES 458 (472)
Q Consensus 392 ~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIVDvs~~sitiE------------~lL~pyG-I~EvaRTG~vAl~Rg~ 458 (472)
++|+||||||||++++++|.+|++++++|||+|||++++++++| ++|+||| |+|++|||.+||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 99999999999999999999999999999999999999999999 9999999 9999999999999998
Q ss_pred C
Q 012043 459 G 459 (472)
Q Consensus 459 ~ 459 (472)
+
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.20 E-value=8.8e-10 Score=100.97 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=53.0
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcC
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KL 142 (472)
+++|+|+..|+||++++|+++++++|+||.++....+.+.-.+++++.+++...++|.++|.++
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLL 69 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999999998875443347787877666778888887443
No 8
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.01 E-value=8.3e-09 Score=90.23 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=88.8
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~ 155 (472)
.||.|.|+++++|+||+|+||+++|+++|+||++++++.+.+++.+++++ .|.+...++.++..-.+...
T Consensus 3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~-~d~~~a~~~L~~~G~~v~~~--------- 72 (144)
T 2f06_A 3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFAVNIT--------- 72 (144)
T ss_dssp SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE-SCHHHHHHHHHHTTCCEEEE---------
T ss_pred ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe-CCHHHHHHHHHHcCCeEeee---------
Confidence 57899999999999999999999999999999999999888877655654 45555666655542221111
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 012043 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI 218 (472)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVD---v-s~~--sl~iE~TG~~~KIdafi~~L~~fGI 218 (472)
.+.-+.+.-.|..-+++.++....+..|.. . ++. +++++. +..+..++.|+.-|.
T Consensus 73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV 133 (144)
T ss_dssp ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence 344556666677777888888888888843 2 333 344555 356666777776664
No 9
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.89 E-value=1.5e-08 Score=80.38 Aligned_cols=77 Identities=18% Similarity=0.338 Sum_probs=67.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCch
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
.+.|.+.+.|+||+|++|+++|++.|+||.++.+....+ ...+++.+. .+...++++.++|+++-+|.+|..+...+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~ 82 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE 82 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 578999999999999999999999999999999987543 778888776 46678999999999999999998876543
No 10
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.88 E-value=2.4e-08 Score=87.35 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=73.0
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
..||.|.|++.++|+||+|++|+++|+++|+||++|+++++.++++.|++ + .|.+...++.++..-.+...
T Consensus 2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~v~~~------ 72 (144)
T 2f06_A 2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFAVNIT------ 72 (144)
T ss_dssp CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCCEEEE------
T ss_pred CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCeEeee------
Confidence 35889999999999999999999999999999999999988887888887 2 46666666666543222111
Q ss_pred CchHHHHhhheeEEecCcccHHHHHHHHHHhCcEEE
Q 012043 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAV 425 (472)
Q Consensus 390 ~~~~V~REL~LiKV~~~~~~r~eI~~ia~iFrakIV 425 (472)
.+.-+.++-.+..-.++.++....+..|.
T Consensus 73 -------svv~v~~~d~pGvla~i~~~L~~~~InI~ 101 (144)
T 2f06_A 73 -------DVVGISCPNVPGALAKVLGFLSAEGVFIE 101 (144)
T ss_dssp -------EEEEEEEESSTTHHHHHHHHHHHTTCCEE
T ss_pred -------eEEEEEeCCCCcHHHHHHHHHHHCCCCEE
Confidence 22333455444455677777766777774
No 11
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.75 E-value=5.8e-08 Score=77.00 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=64.8
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt~~~ 155 (472)
..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.++ .+...+++++++|+++-+|.+|..+..-+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~ 82 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE 82 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 3568999999999999999999999999999999987654223566655 35678999999999999999998776543
No 12
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.61 E-value=9.8e-08 Score=76.80 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcccce
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLIDL 382 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd-e~~ieQIvkQL~KLidV 382 (472)
++++|++...|+||+|++|+++++.+|+||.+++..... +...|++.+... ...+++|.++|+++-+-
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998775 778888887643 36799999999987654
No 13
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.57 E-value=3.5e-07 Score=83.65 Aligned_cols=115 Identities=12% Similarity=0.182 Sum_probs=84.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc----eEEEEecC
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID----LHEVQDIT 389 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLid----Vi~V~dlt 389 (472)
+++|++...|+||++++|+++++++|+||.++....+ .+...|++++.+++...++|.++|.++.+ ...+...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5899999999999999999999999999999888774 46777888888776788999999987654 45566555
Q ss_pred CchHHHHhhheeEEecCcccH----HHHHHHHHHhCcEEEEecCCh
Q 012043 390 HLPFAERELILIKIAVNTAAR----RDVLDIAKIFRARAVDVSDHT 431 (472)
Q Consensus 390 ~~~~V~REL~LiKV~~~~~~r----~eI~~ia~iFrakIVDvs~~s 431 (472)
..+ -.++...+++.+...+| .+|.++...+++.|.++...+
T Consensus 84 ~~~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t 128 (192)
T 1u8s_A 84 PHD-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 128 (192)
T ss_dssp CCC-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCC-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence 433 24444455555444445 345566666788887766443
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.52 E-value=1.4e-07 Score=75.97 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=57.3
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hhhHHHHHHHHhcCceeeEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-d~~ieQI~kQL~KLvdVikV 148 (472)
++++|++...|+||+|++|+++++.+|+||.+++.........+++.++.. ...++++.++|.++-+...+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~~ 75 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNV 75 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHTE
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 678999999999999999999999999999999998765322356665533 35799999999988765433
No 15
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.24 E-value=4.3e-05 Score=70.61 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=55.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeC-ChHHHHHHHHHHhccc----ceE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPG-TDESIGKLVQLLHKLI----DLH 383 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te----~~~iSRiTIVv~g-de~~ieQIvkQL~KLi----dVi 383 (472)
.+++|.+...|+||++++|+++|+++|.||.++...... ..+.--|.+.+.. +... ++|.+.|.++. =-+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~di 170 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGVDI 170 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCeEE
Confidence 468999999999999999999999999999998876443 3466667777653 2334 67777766432 224
Q ss_pred EEEecCCch
Q 012043 384 EVQDITHLP 392 (472)
Q Consensus 384 ~V~dlt~~~ 392 (472)
.+++.++.+
T Consensus 171 ~~~~~~~~~ 179 (195)
T 2nyi_A 171 DLEEVVEGE 179 (195)
T ss_dssp EEEECC---
T ss_pred EEEECcccc
Confidence 555555443
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.99 E-value=2.2e-05 Score=75.71 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=65.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC---CCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEecC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK---EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~---~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dlt 389 (472)
|..+|.+..+|+||+|+.|+.+++..+.||.++++..... .+...|++-+... .+++++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 5689999999999999999999999999999999977651 3688888556544 9999999999999999999887
Q ss_pred CchHHH
Q 012043 390 HLPFAE 395 (472)
Q Consensus 390 ~~~~V~ 395 (472)
...-++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 655544
No 17
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.75 E-value=7.6e-05 Score=71.98 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=61.7
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC----CC-cEEEEEEeCChhhHHHHHHHHhcCceeeEEEecC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~-~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
|..+|.+..+|+||+|+.|+.+++..+.||.++++.... +. ..++|-++.. .++.++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 467999999999999999999999999999999998764 31 2366556543 9999999999999999999887
Q ss_pred Cchhhh
Q 012043 153 NEPHVE 158 (472)
Q Consensus 153 ~~~~V~ 158 (472)
.-..++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 655544
No 18
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.22 E-value=0.0041 Score=53.94 Aligned_cols=71 Identities=15% Similarity=0.339 Sum_probs=60.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEEecCCc
Q 012043 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (472)
Q Consensus 316 tLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V~dlt~~ 391 (472)
.|.|...|++|+|+.|+.+++..+.||.++.+.+. +. +.+.++ .+.+.+.++..+++++-++..+....-.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~ 73 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWM 73 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCC
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCC
Confidence 47899999999999999999999999999999665 44 555555 4667899999999999999998776543
No 19
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=97.13 E-value=0.00094 Score=69.82 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=57.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH 383 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi 383 (472)
.+|.|.+.|.|+||||.+|+++|+..|++|+|+.-.+.. ..+...+.++++ ..|..+++.+++|++|-.|.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 679999999999999999999999999999998876542 233478888888 47888999999999987664
No 20
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.13 E-value=0.0041 Score=53.90 Aligned_cols=69 Identities=12% Similarity=0.304 Sum_probs=58.8
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecC
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS 152 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt 152 (472)
.|.|...|++|+|+.|+.+++..+.||.++.+.+. +.+.+.+. .+.+.+..+..+++++-++..+....
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~ 71 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence 47899999999999999999999999999999665 55656555 45678999999999999999887654
No 21
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=97.11 E-value=0.028 Score=60.65 Aligned_cols=219 Identities=14% Similarity=0.172 Sum_probs=128.7
Q ss_pred EEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCChhhHHHHHHHHhcCc----------eeeEEEecCC
Q 012043 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLNKLV----------NVIKVEDISN 153 (472)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~iTIVV~gdd~~ieQI~kQL~KLv----------dVikV~dlt~ 153 (472)
-+.++||++.||-+.|++.|+||+-++.+..+... -++++++.++ +++..+-|+++. ..-+|.
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~--~~~a~~~l~~~~~el~~~~~~~~~~~v~---- 350 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDL--LNTAEAVTSAIAPALRSYPEADQEAEII---- 350 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGG--HHHHHHHHHHHGGGGSSSTTCSSSSEEE----
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHH--HHHHHHHHHHHHHHhhccccccCcceeE----
Confidence 56789999999999999999999999877655432 3788887543 333333343322 112222
Q ss_pred chhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccce
Q 012043 154 EPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKI 227 (472)
Q Consensus 154 ~~~V~RELaLIKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlEvaRTG~i 227 (472)
+.+.+++|-|--. +..-..+++.....+..|.-++.....|-+.=+.+..+..++.|.. |..-.
T Consensus 351 ---~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~------- 420 (600)
T 3l76_A 351 ---VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL------- 420 (600)
T ss_dssp ---EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB-------
T ss_pred ---ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC-------
Confidence 4566777777532 2334467777776666665554333444444455555555555543 33110
Q ss_pred eeecCcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccC
Q 012043 228 ALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDE 307 (472)
Q Consensus 228 Al~Rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
. . . ..+ -++.| .++.. |+-.+.
T Consensus 421 ----t-----~------------------------------~--------~~~-~~~~~-------~~~v~---Gia~~~ 442 (600)
T 3l76_A 421 ----S-----P------------------------------P--------KNQ-TDTSH-------LPAVR---GVALDQ 442 (600)
T ss_dssp ----C-----C------------------------------C--------CCC-CC----------CCSCC---EEEEEC
T ss_pred ----C-----C------------------------------c--------ccc-ccccc-------cCceE---EEEeeC
Confidence 0 0 0 000 00111 11111 333333
Q ss_pred CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CC--eEEEEEEEeCC-hHHHHHHHHHHhcccc
Q 012043 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EG--LSCITTVVPGT-DESIGKLVQLLHKLID 381 (472)
Q Consensus 308 ~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~--~~--iSRiTIVv~gd-e~~ieQIvkQL~KLid 381 (472)
+.. +-++. -+.|+||+..||-+.+++.|+|+|=|.....+. .+ ...|+++++.+ -+...++.+++.+-++
T Consensus 443 ~~a---~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~ 517 (600)
T 3l76_A 443 DQA---QIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWL 517 (600)
T ss_dssp SEE---EEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTST
T ss_pred CEE---EEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcC
Confidence 322 23443 589999999999999999999999999988764 24 67899999843 2334455555554443
No 22
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=97.10 E-value=0.0018 Score=66.71 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=62.4
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
..+.|.+.=+|+||++.+|+.+|+..|+||.++.++...+.+++.|-+++....-+.+.++|+++-.|++|..+
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 35678899999999999999999999999999999985544567777887644678899999999999998754
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.01 E-value=0.0018 Score=59.78 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=50.5
Q ss_pred ccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC----CCcE--EEEEEeC-ChhhHHHHHHHHhcC
Q 012043 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSG-TERVLRQVVEQLNKL 142 (472)
Q Consensus 75 ~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~~~--iTIVV~g-dd~~ieQI~kQL~KL 142 (472)
....+++|.|...|+||++++|+++|+++|.||..+...... ..++ |++.+.. +... ++|.+.|.++
T Consensus 89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV 162 (195)
T ss_dssp TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence 345689999999999999999999999999999998877443 2344 5555543 2334 7777777644
No 24
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=96.97 E-value=0.0043 Score=63.86 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=63.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
.+.|.+.=+|+||++.+|+.+|+..|+||.+..++. ..++.-|.+-+++....-+.+.++|+++-.|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 456889999999999999999999999999999998 6677778887887644668999999999999999754
No 25
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=96.92 E-value=0.0053 Score=55.17 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=78.8
Q ss_pred EEEEEE-EcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 80 htISIl-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ + .++++++.++ .++..+.|+++..=+.. ..-.
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~--~~~a~~~l~~~~~~l~~----~~i~ 98 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGD--YKQTLEILSERQDSIGA----ASID 98 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGG--HHHHHHHHHHSSTTTTC----SEEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechH--HHHHHHHHHHHHHHcCC----ceEE
Confidence 456676 79999999999999999999999999876544 4 4888887533 23333444433211111 1112
Q ss_pred hhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 012043 157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG 217 (472)
Q Consensus 157 V~RELaLIKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG 217 (472)
+.+.++++-|-... .--..+++....++..| +..++.++.+=+ +.+..+..++.|. .|+
T Consensus 99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv--~~~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI--DEKYMELATRVLHKAFN 165 (167)
T ss_dssp EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE--eHHHHHHHHHHHHHHhc
Confidence 45678888886543 33457888888877777 444555555554 3344444555443 354
No 26
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=96.81 E-value=0.0022 Score=67.04 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=57.4
Q ss_pred cccceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecC--C-CcEEEEEEe-CChhhHHHHHHHHhcCceee
Q 012043 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--D-KALFTIVVS-GTERVLRQVVEQLNKLVNVI 146 (472)
Q Consensus 74 ~~~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d-~~~iTIVV~-gdd~~ieQI~kQL~KLvdVi 146 (472)
.+-..+|.|.+.+.|+||||++|+++|+..|++|+|+...+.. + ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus 354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 4445789999999999999999999999999999999876542 1 123556665 57889999999999986664
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.61 E-value=0.0046 Score=61.69 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=51.8
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhc
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~K 141 (472)
++++++|++...|+||+.++|++.++.+|.||..++.......++ |.+.++.++ ..++++...|+.
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP 88 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999775444566 566666433 356667666644
No 28
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.54 E-value=0.0046 Score=61.37 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=50.0
Q ss_pred cceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC----hhhHHHHHHHHhc
Q 012043 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLNK 141 (472)
Q Consensus 76 ~~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd----d~~ieQI~kQL~K 141 (472)
.+++++|++...|+||+.++|++.++.+|.||..++.......++ |.+.++.+ ...++++...|+.
T Consensus 7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 356789999999999999999999999999999999774444565 55555544 2346666666644
No 29
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.53 E-value=0.005 Score=60.85 Aligned_cols=65 Identities=3% Similarity=-0.067 Sum_probs=49.2
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhhHHHHHHHHhc
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNK 141 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-d~~ieQI~kQL~K 141 (472)
|.+++|++...|+||+.++|++.|+.+|.||..++.......+. |.+.++.+ +..++++...++.
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE 73 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999774445565 56666543 2346666666543
No 30
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.46 E-value=0.004 Score=65.80 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=57.3
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
-|+|-+...|+||++.+|+.++...|+||..+.++..... ++|.|.++. ..-+.+.++|.++.+|.+|..+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~--~~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC--CCCHHHHHHHhcCCCccEEEEE
Confidence 4799999999999999999999999999999999987654 357777763 3345566777777777777644
No 31
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.41 E-value=0.0065 Score=60.14 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=49.3
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hhHHHHHHHHhc
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd--~~ieQI~kQL~K 141 (472)
.+++|++...|+||+.++|++.++.+|.||..++.-.+...+. |.+.++.++ ..++++...|+.
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~ 72 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV 72 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999865555565 555555332 356667666643
No 32
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.41 E-value=0.0074 Score=60.22 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=53.4
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhc
Q 012043 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK 378 (472)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~K 378 (472)
.|+.+++|++...|+||+.++||+.++.+|.||..++.-.....+.--|.+.++.++ ..++++.+.|+.
T Consensus 18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP 88 (302)
T ss_dssp CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence 477889999999999999999999999999999999887554556666666666432 245666655543
No 33
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=96.39 E-value=0.013 Score=60.93 Aligned_cols=73 Identities=15% Similarity=0.274 Sum_probs=61.3
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEec
Q 012043 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dl 151 (472)
.|.|.+.=+|.||+|.+|..+|+..|+||+...-....+-++..+=+++....-+.+.++|+++-.|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 5789999999999999999999999999999997666666665555663355678999999999999998754
No 34
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.39 E-value=0.0059 Score=64.52 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=60.9
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
.|+|-+...|+||++.+|+.++...|+||.++.++..+..+..=|.|-++.. .-+.+.++|.++.+|.+|..+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence 3899999999999999999999999999999999998877777777777742 345666777777788777654
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.30 E-value=0.0074 Score=59.70 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhhHHHHHHHH
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL 139 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~~ieQI~kQL 139 (472)
++++|++...|+||+.++|++.++.+|.||..++.-.+...++ |.+.++.+...++++...|
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f 69 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF 69 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999865555666 5555655432333444444
No 36
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.21 E-value=0.01 Score=58.82 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=49.7
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC----hHHHHHHHHHHhc
Q 012043 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLLHK 378 (472)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd----e~~ieQIvkQL~K 378 (472)
..+++++|++...|+||+.++||+.++.+|.||..++.-.....+.--|.+.+..+ ...++++...|+.
T Consensus 6 ~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 6 QRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp --CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred CCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 44567999999999999999999999999999999988744445555555555433 2345555555543
No 37
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.17 E-value=0.011 Score=58.48 Aligned_cols=125 Identities=10% Similarity=0.134 Sum_probs=72.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcc---cce-EEEEe
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL---IDL-HEVQD 387 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--~~ieQIvkQL~KL---idV-i~V~d 387 (472)
+++|++...|+||+.++||+.++.+|.||..++.-.+...+.--|.+.+..++ ..++++.+.|+.+ .++ +++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~ 85 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD 85 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence 58999999999999999999999999999999986555556555555554322 3455665555433 222 45554
Q ss_pred cCCchHHHHhhheeEEecCcccHHHHHHHHHH--hCcEEEEecCCh-hhhhHhhccCCc
Q 012043 388 ITHLPFAERELILIKIAVNTAARRDVLDIAKI--FRARAVDVSDHT-ITLERLLEPYGI 443 (472)
Q Consensus 388 lt~~~~V~REL~LiKV~~~~~~r~eI~~ia~i--FrakIVDvs~~s-itiE~lL~pyGI 443 (472)
-.... | ..|=++-...+-..+++-++. ..++|+-|-.+. =.+.++.+.+||
T Consensus 86 ~~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gI 139 (288)
T 3obi_A 86 RETRR---K--VMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDI 139 (288)
T ss_dssp TTSCE---E--EEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTC
T ss_pred cCCCc---E--EEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCC
Confidence 43211 1 111122222223344443322 346666554333 334455666775
No 38
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.11 E-value=0.041 Score=55.17 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=86.2
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChh--hHHHHHHHHhcCc---e-eeEEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKVE 149 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gdd~--~ieQI~kQL~KLv---d-VikV~ 149 (472)
++++|++.-.|+||+.++|++.++++|.||..+.... ..+. |.+.+..++. .++++.+.|+.+- . -+++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 5789999999999999999999999999999998764 3455 5555665543 3477777776552 1 24455
Q ss_pred ecCCchhhhh-heeeEEEeCCC---CCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCCh---hHHH-HHHHHhcc
Q 012043 150 DISNEPHVER-ELMLIKLNGDT---STWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDP---GKMV-AVQRNLSK 215 (472)
Q Consensus 150 dlt~~~~V~R-ELaLIKV~~~~---~~r~eI~~l~~~FrAkIVDvs~~s------l~iE~TG~~---~KId-afi~~L~~ 215 (472)
+.+......+ ...++-+-... ..-.+|..+...++..|-++..-+ +-+.+.+++ +.+. ++.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~ 168 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE 168 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence 5444322222 33444443332 233456666666678887775544 335555554 3333 34444566
Q ss_pred CCc
Q 012043 216 FGI 218 (472)
Q Consensus 216 fGI 218 (472)
+++
T Consensus 169 ~~v 171 (415)
T 3p96_A 169 EHV 171 (415)
T ss_dssp HTC
T ss_pred cCc
Confidence 665
No 39
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.10 E-value=0.014 Score=57.75 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=48.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHh
Q 012043 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLH 377 (472)
Q Consensus 312 ~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-~~ieQIvkQL~ 377 (472)
|.+++|++...|+||+.++||+.++.+|.||..++.-.....+.--|.+.++.++ ..++++.+.|+
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence 4568999999999999999999999999999999887544556655666665422 23455554443
No 40
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=95.96 E-value=0.017 Score=57.18 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=74.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh---cccce-EEEEec
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH---KLIDL-HEVQDI 388 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~---KLidV-i~V~dl 388 (472)
++++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.+..+....+++.+.|+ +-.++ +++.+-
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~~ 85 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFRPR 85 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEeecc
Confidence 46899999999999999999999999999999998755566777777777654333445555543 32333 455554
Q ss_pred CCchHHHHhhheeEEecCcccHHHHHHHHH--HhCcEEEEecCChhh-hhHhhccCCc
Q 012043 389 THLPFAERELILIKIAVNTAARRDVLDIAK--IFRARAVDVSDHTIT-LERLLEPYGI 443 (472)
Q Consensus 389 t~~~~V~REL~LiKV~~~~~~r~eI~~ia~--iFrakIVDvs~~sit-iE~lL~pyGI 443 (472)
.... | ..|=++-...+-..+++-.+ ...++|+-|-.+.=. +.++.+.+||
T Consensus 86 ~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gI 138 (287)
T 3nrb_A 86 TDRK---K--VVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDI 138 (287)
T ss_dssp TCCC---E--EEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTS
T ss_pred CCCc---E--EEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCC
Confidence 3211 1 11112222222334444332 235677655433322 4555666775
No 41
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=95.83 E-value=0.023 Score=50.91 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=66.8
Q ss_pred EEEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCch
Q 012043 315 HTLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 315 htLSil-VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +...++++++.++ +...++.+++.+-.....+
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i------- 97 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI------- 97 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE-------
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE-------
Confidence 355666 79999999999999999999999999876554 5667999998532 2344444444333332111
Q ss_pred HHHHhhheeEEecCc-----ccHHHHHHHHHHhCcEEEEe
Q 012043 393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARAVDV 427 (472)
Q Consensus 393 ~V~REL~LiKV~~~~-----~~r~eI~~ia~iFrakIVDv 427 (472)
.+.+.++++-|-... .--..+++....++-.|..+
T Consensus 98 ~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 98 DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence 233556777765432 22357777777777777444
No 42
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=95.78 E-value=0.028 Score=58.36 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=59.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 314 ~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
.|-|.+.=+|.||+|.+|+.+|+..|+||+...-....+-++ ..+=+++..+.-+.+.++|+++-.|++|+.+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y--~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY--LVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE--EEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 478999999999999999999999999999988665544443 3333443356778999999999999999864
No 43
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=95.32 E-value=0.11 Score=51.47 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=60.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V 385 (472)
.|-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=++| ++..+.+..+.|++.-.-+++
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 4678888889999999999999999999999999998875 466667777776 456799999999988665554
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=94.96 E-value=0.26 Score=44.66 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=77.6
Q ss_pred EEEE-EEcCcchHHHHHHHHHhccCceeeeEeeeecC--CC-cEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchh
Q 012043 81 TISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (472)
Q Consensus 81 tISI-lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~-~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~ 156 (472)
.|++ .+.|+||.+.+|...|++.|+||+-++.+... +. ..+++++..++ .++..+.|+++..=+... .-.
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~----~v~ 90 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWT----NVL 90 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCS----EEE
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCC----eEE
Confidence 4555 46899999999999999999999999876432 22 23777776433 344445555432211111 112
Q ss_pred hhhheeeEEEeCCC-CCH----HHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 012043 157 VERELMLIKLNGDT-STW----PEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (472)
Q Consensus 157 V~RELaLIKV~~~~-~~r----~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~~-fG 217 (472)
+.+++++|-|-... ..+ ..+++.....+-.| +.-++.++.+=+ +.+..+..++.|.. |+
T Consensus 91 ~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 91 YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 157 (178)
T ss_dssp EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence 45788888886543 222 35555555555566 444555544444 55666666666553 54
No 45
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=94.69 E-value=0.22 Score=49.23 Aligned_cols=71 Identities=21% Similarity=0.370 Sum_probs=56.5
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCceeeEE
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvdVikV 148 (472)
.+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + +-|-++| ++..+.+..+.|++.-.-+++
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 56688888899999999999999999999999999888654 3 3 5555665 456788889999887654443
No 46
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.68 E-value=0.089 Score=52.70 Aligned_cols=115 Identities=14% Similarity=0.070 Sum_probs=72.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--HHHHHHHHHhccc---c-eEEEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKLI---D-LHEVQ 386 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~--~ieQIvkQL~KLi---d-Vi~V~ 386 (472)
.+++|++.-.|+||+.++|++.++++|.||..+..... .+.--|.+.+..++. ..++|.+.|..+- . -+++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 46899999999999999999999999999999888653 455566666665544 3467777665542 2 24566
Q ss_pred ecCCchHHHH-hhheeEEecCc---ccHHHHHHHHHHhCcEEEEecC
Q 012043 387 DITHLPFAER-ELILIKIAVNT---AARRDVLDIAKIFRARAVDVSD 429 (472)
Q Consensus 387 dlt~~~~V~R-EL~LiKV~~~~---~~r~eI~~ia~iFrakIVDvs~ 429 (472)
+.+......+ ...++-+-... ..-.+|.++...++..|-++..
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~ 135 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRG 135 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceee
Confidence 5554322222 23344343322 2234555555556677665543
No 47
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=94.63 E-value=0.12 Score=51.82 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=59.9
Q ss_pred CCceEEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEE
Q 012043 310 SGLRSHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE 384 (472)
Q Consensus 310 ~~~~~htLSilVe-N~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~ 384 (472)
++-.|-.|.+.+. |+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+.| ++..+.+..+.|++.-.-++
T Consensus 197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~k 275 (313)
T 3mwb_A 197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATR 275 (313)
T ss_dssp CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEE
Confidence 4556778888884 999999999999999999999999888764 466677777776 56778888888888644333
No 48
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=94.37 E-value=0.12 Score=47.42 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=74.6
Q ss_pred EEcCcchHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCchhhhhh
Q 012043 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (472)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~~~V~RE 160 (472)
-+.|+||.+.||.+.|++.|+||+.++...++ +.+. ++++++.++ ....++.+++.+-+..-+|. +.+.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence 47899999999999999999999999876555 2444 888887544 22333333332212222222 3456
Q ss_pred eeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 012043 161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (472)
Q Consensus 161 LaLIKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fG 217 (472)
+++|-|--.. .+ -..+++.....+-.|.-++...+.|-+.=+.+..+..++.|.. |+
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHHc
Confidence 7777764322 12 2355666665566655554333444444455555555555543 54
No 49
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=94.15 E-value=0.14 Score=45.66 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=72.3
Q ss_pred EcCcchHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCchhhhhhe
Q 012043 86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL 161 (472)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~~~V~REL 161 (472)
+.|+||++.||.+.+++.|+||+-++.+.+. +.+ -++++++.++ +...++.+++.+-... .+. +.+.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987652 334 4888887543 2222333332222222 333 45678
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 162 MLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 162 aLIKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
+++-|-... .--..+++.....+-.| +.-++. .+-+.=+.+..+..++.|..
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~--~is~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEV--RISVIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSS--EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCC--EEEEEEeHHHHHHHHHHHHH
Confidence 888775532 22335666665555666 443433 33333345556666666654
No 50
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=94.05 E-value=0.21 Score=45.70 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=62.4
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCchHHHHh
Q 012043 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAERE 397 (472)
Q Consensus 320 lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~~V~RE 397 (472)
-+.|+||.+.||.+.|++.|+||+-++...++ +.+...++++++.++ +...++.+++.+-+..-+|. +...
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence 47899999999999999999999999876665 357788999999654 33444444433222222222 2234
Q ss_pred hheeEEecCc-cc----HHHHHHHHHHhCcEEEEec
Q 012043 398 LILIKIAVNT-AA----RRDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 398 L~LiKV~~~~-~~----r~eI~~ia~iFrakIVDvs 428 (472)
+++|-|--.. .. -..+++....-+-+|.-++
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 6666653221 12 2345555544455544443
No 51
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=93.99 E-value=0.22 Score=49.92 Aligned_cols=69 Identities=22% Similarity=0.356 Sum_probs=53.6
Q ss_pred cceEEEEEEEE-cCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCce
Q 012043 76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (472)
Q Consensus 76 ~~~~htISIlV-eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvd 144 (472)
...|-.|.+.+ +|+||.|.++.+.|+.||+|...|---|+... + + |-|-++| ++..+.+..+.|++.-.
T Consensus 198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~ 272 (313)
T 3mwb_A 198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
T ss_dssp SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence 34567788888 49999999999999999999999988887654 2 3 5555665 56678888888877643
No 52
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=93.98 E-value=0.18 Score=44.62 Aligned_cols=50 Identities=6% Similarity=0.059 Sum_probs=42.9
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~K 378 (472)
.++||++.|+...|++.|+||+-++.++. +++++++.++ .++++.+.|.+
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhc
Confidence 47899999999999999999999986542 7999999654 67888888887
No 53
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=93.70 E-value=0.16 Score=46.11 Aligned_cols=103 Identities=14% Similarity=0.197 Sum_probs=62.6
Q ss_pred EEEE-EEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEEecCC
Q 012043 316 TLSM-LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITH 390 (472)
Q Consensus 316 tLSi-lVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~gde~~ieQIvkQL~KL---idVi~V~dlt~ 390 (472)
.|++ .+.|+||.+.+|...+++.|+||+-++.+....+ +-..|++++..+ ..++..+.|+++ .....+
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~--d~~~a~~~l~~~~~~~~~~~v----- 89 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS--DGRRAMEILKKLQVQGNWTNV----- 89 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH--HHHHHHHHHHTTTTTTTCSEE-----
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc--cHHHHHHHHHHHHHhcCCCeE-----
Confidence 3445 4689999999999999999999999987643222 356778888743 234444445543 222222
Q ss_pred chHHHHhhheeEEecCcc-cH----HHHHHHHHHhCcEEEEe
Q 012043 391 LPFAERELILIKIAVNTA-AR----RDVLDIAKIFRARAVDV 427 (472)
Q Consensus 391 ~~~V~REL~LiKV~~~~~-~r----~eI~~ia~iFrakIVDv 427 (472)
.+..++++|-|-...- .+ ..+++.....+-.|.-+
T Consensus 90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i 129 (178)
T 2dtj_A 90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI 129 (178)
T ss_dssp --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence 2345677777754321 22 34555555545555444
No 54
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=93.45 E-value=0.21 Score=49.12 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=55.0
Q ss_pred eEEEEEEEE---cCcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E---EEEEEeCChhhHHHHHHHHhcCceeeEE
Q 012043 78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 78 ~~htISIlV---eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~---iTIVV~gdd~~ieQI~kQL~KLvdVikV 148 (472)
.|-.|.+.+ .|+||.|.++.+.|+.||+|+..|---|+... + + +-+. +-++..+.+..+.|++.-.-+++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence 355778888 89999999999999999999999998887654 2 3 3444 55667788999999877655444
No 55
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=93.42 E-value=0.21 Score=44.17 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEE
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 166 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV 166 (472)
.++||++.|+-+.|++.|+||+-++.++ ..++++++.++ .++++.+.|.+. -.|. +.+.+++|-|
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~vsv 93 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVIICI 93 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEEEE
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEEEE
Confidence 4799999999999999999999998643 26888887554 678888888772 1222 3457788887
Q ss_pred eCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 012043 167 NGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 167 ~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
--. +..-..+++... +..|.-++ .....|.+.=+.+..+..++.|.
T Consensus 94 vG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh 146 (157)
T 3mah_A 94 VGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS 146 (157)
T ss_dssp EC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred ECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence 543 223334555444 44444443 33334444555555555555554
No 56
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=93.22 E-value=0.18 Score=45.09 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=58.9
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEEecCCchHHHHhh
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL 398 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gde-~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL 398 (472)
+.|+||++.|+.+.+++.|+||+-++.+.+. +.+...++++++.++ +...++.+++.+-... .+. ++..+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987652 335667999998543 2233444433222232 332 23566
Q ss_pred heeEEecCcc-cH----HHHHHHHHHhCcEE
Q 012043 399 ILIKIAVNTA-AR----RDVLDIAKIFRARA 424 (472)
Q Consensus 399 ~LiKV~~~~~-~r----~eI~~ia~iFrakI 424 (472)
+++-|-...- .+ ..+++.....+-.|
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI 126 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANI 126 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCC
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCE
Confidence 6666654321 12 34444444444444
No 57
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=92.76 E-value=0.37 Score=47.34 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=57.1
Q ss_pred EEEEEEEE---eCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 314 SHTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 314 ~htLSilV---eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
|-.|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=++ -++..+.+..++|++.-.-+++
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence 56788888 8999999999999999999999999988865 35555555454 4567789999999887655444
No 58
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=92.75 E-value=0.41 Score=48.37 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=54.8
Q ss_pred EEEEEEEe--CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 012043 315 HTLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 315 htLSilVe--N~pGVL~RVtgLFsRRgyNIeSLtVg~te~-~~iSRiTIVv~g--de~~ieQIvkQL~KLidVi~V 385 (472)
.++.+.+. |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|=++| ++..+.+..+.|++.-.-+++
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 34444444 799999999999999999999999888765 455666666776 457789999999888655554
No 59
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=92.48 E-value=0.27 Score=51.44 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=54.5
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEE-eCChhhHHHHHHHHhcC-ceeeEEE
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVV-SGTERVLRQVVEQLNKL-VNVIKVE 149 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV-~gdd~~ieQI~kQL~KL-vdVikV~ 149 (472)
..+-.|.+.+.|+||.|.++.+.|+.+|+|+..|---|+... +- +-|-+ +-++..+.++++.|.+. ..-+++-
T Consensus 32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL 109 (429)
T 1phz_A 32 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL 109 (429)
T ss_dssp SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence 356678888899999999999999999999999988887654 32 22222 33455588899999888 5544443
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=91.61 E-value=1 Score=46.08 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=79.7
Q ss_pred EEEEEE-EcCcchHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCc
Q 012043 80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE 154 (472)
Q Consensus 80 htISIl-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~ 154 (472)
..|++. +.|+||.+.||...|++.|+||+-++...++ ..+ .++++++.++ ....++.+++.+-+..-.|
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------ 338 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------ 338 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE------
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE------
Confidence 456666 7899999999999999999999999763332 123 4888888543 3344555555433332222
Q ss_pred hhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 012043 155 PHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG 217 (472)
Q Consensus 155 ~~V~RELaLIKV~~~-----~~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG 217 (472)
.+++.+++|-|-.. +.--..+++.....+-.| +.-++.++.+=+ +.+..+..++.|. .|.
T Consensus 339 -~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 339 -LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 406 (421)
T ss_dssp -EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred -EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence 24567888887653 233456777666656666 555555555444 3444555555554 355
No 61
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=91.60 E-value=0.25 Score=46.44 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=50.6
Q ss_pred cccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhc
Q 012043 302 GILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHK 378 (472)
Q Consensus 302 ~~~~~~~~~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gde-~~ieQIvkQL~K 378 (472)
|+-++.+... -+|. -+.|+||++.||-+.|++.|+||+-|+.+.++ +.+...++++++.++ +...++.+++.+
T Consensus 28 GIa~~~~~a~---Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~ 102 (200)
T 4go7_X 28 GVAHDRSEAK---VTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRN 102 (200)
T ss_dssp EEEEECSEEE---EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHH
T ss_pred EEEccCCEEE---EEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHh
Confidence 4444444333 3443 58999999999999999999999999988776 346778888888543 334444444443
No 62
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=91.28 E-value=0.58 Score=49.04 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=57.5
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEe-CChHHHHHHHHHHhcc-cceEEEE
Q 012043 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVP-GTDESIGKLVQLLHKL-IDLHEVQ 386 (472)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~-~iSRiTIVv~-gde~~ieQIvkQL~KL-idVi~V~ 386 (472)
++-.+-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... .-..+-|=+. -++..+.++++.|++. ..-++|-
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL 109 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL 109 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence 34457788888899999999999999999999999998887643 3333333343 2344588999999988 5555553
No 63
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=90.88 E-value=0.85 Score=46.03 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=51.2
Q ss_pred EEEEEEEc--CcchHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhhHHHHHHHHhcCceeeEE
Q 012043 80 HTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 80 htISIlVe--N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--dd~~ieQI~kQL~KLvdVikV 148 (472)
.++.+.+. |+||.|.++.+.|+.||+|...|---|+... + + |=|-++| +|..+.+..+.|++.-.-+++
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 34444443 7999999999999999999999998887654 2 2 5566666 456788888888887554444
No 64
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=90.87 E-value=1 Score=46.13 Aligned_cols=102 Identities=12% Similarity=0.192 Sum_probs=64.6
Q ss_pred EEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEEEecCCch
Q 012043 316 TLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEVQDITHLP 392 (472)
Q Consensus 316 tLSil-VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSRiTIVv~gd-e~~ieQIvkQL~KLidVi~V~dlt~~~ 392 (472)
.|++. +.|+||.+.+|...|++.|+||+-++...++ ..+...++++++.+ .+...++.+++.+-+..-.|
T Consensus 266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------- 338 (421)
T 3ab4_A 266 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------- 338 (421)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE-------
T ss_pred EEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE-------
Confidence 45666 7899999999999999999999999763333 13567899999854 33455666665544442222
Q ss_pred HHHHhhheeEEecCc-----ccHHHHHHHHHHhCcEE
Q 012043 393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARA 424 (472)
Q Consensus 393 ~V~REL~LiKV~~~~-----~~r~eI~~ia~iFrakI 424 (472)
.+++.++++-|-... .--..+++.....+-.|
T Consensus 339 ~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI 375 (421)
T 3ab4_A 339 LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNI 375 (421)
T ss_dssp EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCC
T ss_pred EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCE
Confidence 223466777665432 11245555555544555
No 65
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=89.25 E-value=0.37 Score=45.30 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=70.4
Q ss_pred EEcCcchHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChhhHHHHHHHHhcCce---eeEEEecCCchhhh
Q 012043 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLVN---VIKVEDISNEPHVE 158 (472)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~--~iTIVV~gdd~~ieQI~kQL~KLvd---VikV~dlt~~~~V~ 158 (472)
-+.|+||+++||-+.|++.|+||+-++.+.++.. + .++.++..++ .++..+.|+++.. .-++. ++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d--~~~~~~~l~~~~~~~~~~~v~-------~~ 112 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--GPAAVEKLDSLRNEIGFSQLL-------YD 112 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG--HHHHHHHHHTTHHHHCCSEEE-------EE
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh--HHHHHHHHHHHHhhhceeeEE-------Ee
Confidence 4789999999999999999999999988776532 2 2677776433 3344444444432 22332 44
Q ss_pred hheeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 012043 159 RELMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI 218 (472)
Q Consensus 159 RELaLIKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~-~fGI 218 (472)
..++.|-|--.. .. -+.+++....-+-.|.-++..-+.|-+.=+.+..+..++.|- .|++
T Consensus 113 ~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~Av~aLH~~F~L 178 (200)
T 4go7_X 113 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGL 178 (200)
T ss_dssp CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHhCC
Confidence 556655553222 11 235555554444444333322233333335555555555554 3664
No 66
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=89.20 E-value=2.2 Score=35.53 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=62.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee-ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg-~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi 383 (472)
+-.++.|.|+|+--+-.+|-.++++.|-.|-. -+| |..+.+++=|+++++|+.+.+..+..+|.+|-.|-
T Consensus 6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 45799999999999888999999999999987 555 56668999999999999999999999999998774
No 67
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=87.80 E-value=3.5 Score=35.49 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=62.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhcc---CceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRR---GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRR---gyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
..+.+.+...+.++..+.|..+|.+. +|.+ .+-++....+-.+|+.+. .+.++++.|-+.|.+.-.|.-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 56999999999999999999999998 8987 558889999999999988 5778899999999998887754
No 68
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=86.20 E-value=3.4 Score=34.44 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=57.6
Q ss_pred ceEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhhHHHHHHHHhcCceee
Q 012043 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI 146 (472)
Q Consensus 77 ~~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gdd~~ieQI~kQL~KLvdVi 146 (472)
.+-..+.|.++|+--+-.+|=.++++.|-.|-.=.-=|-.+. ++|+++++|+.+.+..+..+|.+|--|-
T Consensus 5 ~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 5 KRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp CEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 355899999999998888999999999999975433344444 4599999999999999999999987763
No 69
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=85.17 E-value=2.8 Score=34.41 Aligned_cols=70 Identities=6% Similarity=0.140 Sum_probs=60.1
Q ss_pred eEEEEEEEEeCchh-HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 012043 313 RSHTLSMLVNNTPG-VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 313 ~~htLSilVeN~pG-VL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~-gde~~ieQIvkQL~KLidVi~V 385 (472)
..+++.+...+.++ ....|..+| +|++.++. .-++....+..+|+.+. .+.++++.|-+.|.+.-.|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 57999999999999 999999999 77886643 46778889999999988 5778899999999998887655
No 70
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=84.23 E-value=2.9 Score=34.48 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=47.3
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 012043 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (472)
Q Consensus 163 LIKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lEva 222 (472)
++|+.... ...+-|-++++.|+..+ -.+ .-.+|++|+.|+.++++++++.|+..|+ +|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 78887654 45567999999987543 333 3378999999999999999999999996 6765
No 71
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=82.98 E-value=7 Score=40.69 Aligned_cols=116 Identities=14% Similarity=0.249 Sum_probs=77.0
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--hHHHHHHHHhcCceeeEEEecCCchhhhhheeeE
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI 164 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~--~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLI 164 (472)
.++||++.||...|++.|+||+.++.++ .-++++++.++. .++++.+.|.+....-+|. +.+.+++|
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~----~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V 377 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV----DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV 377 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET----TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC----CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence 5799999999999999999999987542 357888875542 4677888887765543333 55678888
Q ss_pred EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHh
Q 012043 165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNL 213 (472)
Q Consensus 165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L 213 (472)
-|--. +..-..+++.....+-.|.-++ ...+.|-+.=+.+..+..++.|
T Consensus 378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aL 433 (446)
T 3tvi_A 378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSI 433 (446)
T ss_dssp EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHH
T ss_pred EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHH
Confidence 87432 3345577777777777775554 3334344444445555555554
No 72
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=82.55 E-value=7 Score=40.67 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=72.0
Q ss_pred EEEEEE---EcCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhhHHHHHHHHhcCc------------e
Q 012043 80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV------------N 144 (472)
Q Consensus 80 htISIl---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd~~ieQI~kQL~KLv------------d 144 (472)
-.|++. ..|+||++.||...|++.|+||+-++.+.++ ..++++++.++ .++..+.|++-. .
T Consensus 319 a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d--~~~a~~~L~~~l~~~~~~~~~~~~~ 394 (473)
T 3c1m_A 319 ALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEED--VDKALKALKREFGDFGKKSFLNNNL 394 (473)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGG--HHHHHHHHHHHHCC----CTTSCCC
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechH--HHHHHHHHHHHHhhhcccccccccc
Confidence 345555 4789999999999999999999999975444 24888887543 334444444211 1
Q ss_pred eeEEEecCCchhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 012043 145 VIKVEDISNEPHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 145 VikV~dlt~~~~V~RELaLIKV~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
.-.|. +++.+++|-|--.. ..-..+++.....+-.|.-++ ...+.|-+.=+.+..+..++.|.
T Consensus 395 ~~~v~-------~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh 464 (473)
T 3c1m_A 395 IRDVS-------VDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 464 (473)
T ss_dssp EEEEE-------EEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHH
T ss_pred cceEE-------EeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHH
Confidence 11221 45677888776543 222356666655555663332 33333333334444555555544
No 73
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=82.30 E-value=2.7 Score=34.57 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=46.4
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 012043 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (472)
Q Consensus 163 LIKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lEva 222 (472)
++|+.... ...+-|-++++.|+..+ -.+ .-.+|++|+.|+.+.++++++.|+..|+ +|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 67776643 45667899999886543 332 3378999999999999999999999996 5665
No 74
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=81.70 E-value=2 Score=35.58 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=47.2
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 012043 163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR 223 (472)
Q Consensus 163 LIKV~~~~--~~r~eI~~l~~~FrA-------kIVDv---s~~sl~iE~TG-~~~KIdafi~~L~~fGI-lEvaR 223 (472)
++|+.... ...+-|-++++.|+. +|-.+ .-.+|++|+.| +++.++++++.|+..|+ +|...
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 78887653 455678899998854 44443 33789999999 89999999999999996 67763
No 75
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=81.65 E-value=3.6 Score=44.32 Aligned_cols=127 Identities=10% Similarity=0.145 Sum_probs=84.3
Q ss_pred EEcCcchHHHHHHHHHhccCceeeeEeeeecCC--Cc----EEEEEEeCCh-hhHHHHHHHHhcCceeeEEEecCCchhh
Q 012043 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA----LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (472)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~----~iTIVV~gdd-~~ieQI~kQL~KLvdVikV~dlt~~~~V 157 (472)
-+.|+||+..||-+.+++.|+|+|-+.....+. .+ -+++++..++ ....++.+++.+-++-.++. +
T Consensus 451 ~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~v~-------~ 523 (600)
T 3l76_A 451 HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIV-------V 523 (600)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCEEE-------E
T ss_pred cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCceEE-------E
Confidence 578999999999999999999999998887663 13 3788886332 33344444444333322222 4
Q ss_pred hhheeeEEEeC-----CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 012043 158 ERELMLIKLNG-----DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI 218 (472)
Q Consensus 158 ~RELaLIKV~~-----~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~-~fGI 218 (472)
...+++|-|-- .+..-..+++....-+-.|.=++..-+.|-+.=+.+..+..++.|. .|++
T Consensus 524 ~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l 590 (600)
T 3l76_A 524 NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL 590 (600)
T ss_dssp ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence 45677666632 2344457777777777777777666666776667777777777775 4764
No 76
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=79.23 E-value=3.9 Score=34.21 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=46.6
Q ss_pred eeEEEeCCC--CCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 012043 162 MLIKLNGDT--STWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KEL 221 (472)
Q Consensus 162 aLIKV~~~~--~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI-lEv 221 (472)
.++|+.... ...+-|-++++.|+..+ ||- .-.+|++|++|+++++++.++.|+..|+ +|.
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 567776543 45668999999998654 233 4567999999999999999999999996 454
No 77
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=78.29 E-value=2 Score=44.70 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=39.4
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 012043 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (472)
Q Consensus 321 VeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~ 377 (472)
..|+||++.||...+++.|+||+-++.+.++ ..|+++++.++ .++..+.|+
T Consensus 328 m~~~~G~~a~if~~La~~~InV~~IsQ~tse----~~Is~~V~~~d--~~~a~~~L~ 378 (473)
T 3c1m_A 328 MVGVSGTAARIFKALGEEEVNVILISQGSSE----TNISLVVSEED--VDKALKALK 378 (473)
T ss_dssp SSCHHHHHHHHHHHHHHTTCCEEEEEECCTT----CCEEEEEEGGG--HHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEEecCCC----CEEEEEEechH--HHHHHHHHH
Confidence 3688999999999999999999999976554 25889998543 445555444
No 78
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=77.12 E-value=3.5 Score=34.45 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 26 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~ 72 (98)
T 3trg_A 26 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 72 (98)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence 46899999999988 7888888889999999999999999999986
No 79
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=74.44 E-value=16 Score=30.31 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=57.9
Q ss_pred EEEEEEEEe--CchhHHHHHHHHHhccCceeeeeeeeecCCCC-e-EEEEEEEe-CChHHHHHHHHHHhcccceEEEEe
Q 012043 314 SHTLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG-L-SCITTVVP-GTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 314 ~htLSilVe--N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~-i-SRiTIVv~-gde~~ieQIvkQL~KLidVi~V~d 387 (472)
.|++.+.+. +..-|.+.+...+.+-+|.+.+|...+.+ ++ + -+-+++.. -++..+++|+.+|...-.|..|.=
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~W 85 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHW 85 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 477777764 56778888999999999999999977766 55 4 44455555 477789999999999999998863
No 80
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=71.36 E-value=7.1 Score=34.74 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~----iTIVV~gdd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
-|++|..|..+=...|..++++..++....+ + ++|.+.|+-..+-+-...|++|-.++.+.+++=
T Consensus 44 m~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i 113 (147)
T 2rjz_A 44 VPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEI 113 (147)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 4899999999999999999999988654333 2 899999999999999999999999999988853
No 81
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=71.26 E-value=14 Score=39.01 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=50.1
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--------HHHHHHHHHHhcccceEEEEecCCchH
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--------ESIGKLVQLLHKLIDLHEVQDITHLPF 393 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde--------~~ieQIvkQL~KLidVi~V~dlt~~~~ 393 (472)
.++||++.||-..|++.|+||+-++-+ ...|+++++.++ +.++++.++|.+.-.| .
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~ss------e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v-~--------- 415 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVV-N--------- 415 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEE------TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEE-E---------
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeC------CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeE-E---------
Confidence 358999999999999999999999643 346899998643 4678888888773222 1
Q ss_pred HHHhhheeEEecC
Q 012043 394 AERELILIKIAVN 406 (472)
Q Consensus 394 V~REL~LiKV~~~ 406 (472)
+++.+++|-|--.
T Consensus 416 ~~~~~a~VsiVG~ 428 (510)
T 2cdq_A 416 LLKGRAIISLIGN 428 (510)
T ss_dssp EEEEEEEEEEEEC
T ss_pred EeCCcEEEEEEEE
Confidence 2345677776554
No 82
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=70.79 E-value=7.1 Score=40.65 Aligned_cols=94 Identities=9% Similarity=0.179 Sum_probs=63.2
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--HHHHHHHHHhcccceEEEEecCCchHHHHhhh
Q 012043 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKLIDLHEVQDITHLPFAERELI 399 (472)
Q Consensus 322 eN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~--~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~ 399 (472)
.++||++.||...|++.|+||+-++.++ ..++++++.++. .++++.+.|.+.+..-+|. +.+.++
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~------~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA 375 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV------DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMA 375 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET------TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC------CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeE
Confidence 4789999999999999999999997542 368888886543 4677888888765533332 334566
Q ss_pred eeEEecCc-----ccHHHHHHHHHHhCcEEEEec
Q 012043 400 LIKIAVNT-----AARRDVLDIAKIFRARAVDVS 428 (472)
Q Consensus 400 LiKV~~~~-----~~r~eI~~ia~iFrakIVDvs 428 (472)
+|-|--.. ..-..+++....-+-.|.-++
T Consensus 376 ~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs 409 (446)
T 3tvi_A 376 LVATVGTGMAKTKGIANKIFTALSKENVNIRMID 409 (446)
T ss_dssp EEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence 76664322 122456666655566665544
No 83
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=69.72 E-value=22 Score=37.66 Aligned_cols=114 Identities=15% Similarity=0.278 Sum_probs=70.4
Q ss_pred cCcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--------hhHHHHHHHHhcCceeeEEEecCCchhhh
Q 012043 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--------RVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (472)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd--------~~ieQI~kQL~KLvdVikV~dlt~~~~V~ 158 (472)
.++||++.||-..|++.|+||+-++-+ ..-++++++.++ +.++++.++|++.- +|+ ++
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~ss----e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~---~v~-------~~ 417 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKLWSRELIQQELDHVVEELEKIA---VVN-------LL 417 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---EEE-------EE
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeC----CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCC---eEE-------Ee
Confidence 458999999999999999999999643 334888887543 46777777887632 222 45
Q ss_pred hheeeEEEeCCCCCHH----HHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 159 RELMLIKLNGDTSTWP----EIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 159 RELaLIKV~~~~~~r~----eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
+.+++|-|--.-.... .+++.....+-.| +.-+...+-|-+.=+.+..+..++.|.
T Consensus 418 ~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH 479 (510)
T 2cdq_A 418 KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 479 (510)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHH
T ss_pred CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 6788888865521221 3333333334455 443244444444445555655555554
No 84
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=69.61 E-value=26 Score=30.00 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred EEEEEEEEcCcchHHHHHHHHHhcc---CceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEE
Q 012043 79 RHTISVFVGDESGIINRIAGVFARR---GYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 79 ~htISIlVeN~pGVL~RIagLFsRR---GyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV 148 (472)
.+.+.+...+.++..+.|..+|.+. +|.+ ++-++..... +|+.+. -+.+.++.|-+.|.+.-.|+-|
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 6899999999999999999999998 8988 3445544444 566555 3577899999999888777654
No 85
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=68.67 E-value=26 Score=29.08 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=57.8
Q ss_pred ccceEEEEEEEEc--CcchHHHHHHHHHhccCceeeeEeeeecCCCc-E-E--EEEEe-CChhhHHHHHHHHhcCceeeE
Q 012043 75 SKVKRHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L-F--TIVVS-GTERVLRQVVEQLNKLVNVIK 147 (472)
Q Consensus 75 ~~~~~htISIlVe--N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~-i--TIVV~-gdd~~ieQI~kQL~KLvdVik 147 (472)
+....|+|.+.+. ++.-+.+.+...+.+.+|-+.+|...+.+ ++ . | +++.. -+++.+++|+.+|...-.|..
T Consensus 4 ~~e~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~ 82 (94)
T 2lqj_A 4 EGLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYA 82 (94)
T ss_dssp SSEEEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEE
T ss_pred CcceEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEE
Confidence 3445688888775 56677888889999999999999977655 54 3 4 44444 467899999999999999998
Q ss_pred EE
Q 012043 148 VE 149 (472)
Q Consensus 148 V~ 149 (472)
|.
T Consensus 83 a~ 84 (94)
T 2lqj_A 83 VH 84 (94)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 86
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=68.54 E-value=8.2 Score=31.50 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|-..++.++.+++-|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 35888999999876 5688888889999999999999999999974
No 87
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=68.11 E-value=9.4 Score=31.02 Aligned_cols=44 Identities=5% Similarity=-0.042 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 16 GYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 35888899998876 568888888899999999999999999997
No 88
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=66.23 E-value=9.4 Score=30.98 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=40.0
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 012043 315 HTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (472)
Q Consensus 315 htLSilVeN~pGVL~----RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL 376 (472)
+...|.|..+||||+ .|.+-..+.||+++++.+| -++++.+++++ +.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-------K~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTT-------DVITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEE-------EEEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEE-------EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 567888999999996 4556679999999998876 45778777652 3455555554
No 89
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=65.38 E-value=8.7 Score=31.17 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=38.8
Q ss_pred EEEEEEEcCcchHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHH
Q 012043 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (472)
Q Consensus 80 htISIlVeN~pGVL~----RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL 139 (472)
+...|.|..|||+|. .|.+-..+.||+++++.+|. .+++.+++++ +.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-----~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-----VITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-----EEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEEE-----EEEEEecCCCHHHHHHHHHHHHHHh
Confidence 456778888899985 45566799999998888753 5788787652 3455555554
No 90
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=63.90 E-value=9.5 Score=31.23 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45888999999875 568888888999999999999999999997
No 91
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=63.20 E-value=51 Score=26.52 Aligned_cols=72 Identities=6% Similarity=-0.063 Sum_probs=57.3
Q ss_pred EEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEE
Q 012043 314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (472)
Q Consensus 314 ~htLSilVeN~-pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~ 386 (472)
--+|++..+++ .++-.|++.+.....=.|-|-.=-+- +.+..=.++++.|+-+.+..+..+|..+-.|..+.
T Consensus 5 ~Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhl-d~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 5 FAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeee-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 35888888888 77888999999988877776333343 33467788999999999999999999997776664
No 92
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=63.03 E-value=13 Score=30.00 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=32.9
Q ss_pred EEEEEEEcCcchHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 012043 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (472)
Q Consensus 80 htISIlVeN~pGVL~----RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd 128 (472)
+...|.|..|||||. .|.+-..+.||+++++.+|. .+++...++
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-----~~~l~~~~~ 51 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVGK-----VLEIVFPAE 51 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEEE-----EEEEEEECS
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEEE-----EEEEEecCC
Confidence 456777888899985 45667899999988887653 577777654
No 93
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=62.98 E-value=11 Score=31.41 Aligned_cols=45 Identities=2% Similarity=-0.044 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|-..++.++.+++-|++++|++|++.|+.
T Consensus 25 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 71 (102)
T 1urr_A 25 FFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLEN 71 (102)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 45889999999876 5688888889999999999999999999973
No 94
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=62.27 E-value=11 Score=31.56 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|-...+.++.+++.|++++|++|++.|+.
T Consensus 28 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 28 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 46999999999876 5688888889999999999999999999973
No 95
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=61.95 E-value=19 Score=29.33 Aligned_cols=67 Identities=10% Similarity=0.301 Sum_probs=48.8
Q ss_pred EEEEEEEEcCcch-HHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhhHHHHHHHHhcCceeeEE
Q 012043 79 RHTISVFVGDESG-IINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (472)
Q Consensus 79 ~htISIlVeN~pG-VL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gdd~~ieQI~kQL~KLvdVikV 148 (472)
.+++.+...+.++ ....|..+| +|++.++. .-++..... +|+.+. .+.+.++.|-+.|.+.-.|.-|
T Consensus 15 ~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 15 LWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp EEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 6899999999999 999999999 77886543 112222222 555554 3577899999999988777654
No 96
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=61.87 E-value=16 Score=29.48 Aligned_cols=44 Identities=25% Similarity=0.513 Sum_probs=34.0
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 012043 315 HTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (472)
Q Consensus 315 htLSilVeN~pGVL~----RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gd 365 (472)
+...|.|..+||||+ .|.+-..+.||+++++.+| -++++-..++
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-------K~~~l~~~~~ 51 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVG-------KVLEIVFPAE 51 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEE-------EEEEEEEECS
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEE-------EEEEEEecCC
Confidence 557888889999996 5567789999998888876 4577777654
No 97
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=61.30 E-value=11 Score=30.91 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHh
Q 012043 171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNL 213 (472)
Q Consensus 171 ~~r~eI~~l~~~F--rAkIVDvs~~sl~iE~TG~~~KIdafi~~L 213 (472)
.-|.-+.++|+.+ .+.|-..++.++.+++-|++++|++|++.|
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 18 GFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp TCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 4577888888875 477889999999999999999999999999
No 98
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=60.83 E-value=88 Score=27.75 Aligned_cols=77 Identities=10% Similarity=0.035 Sum_probs=62.5
Q ss_pred CceEEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEec
Q 012043 311 GLRSHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (472)
Q Consensus 311 ~~~~htLSilVeN~-pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~dl 388 (472)
+-.--+|++..+++ .++-.+++.+.....=.|-|-.=-+- +.+..=.++++.|+-+.+..+..+|..+=.|..+.-.
T Consensus 62 ~~~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhl-d~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl~ 139 (148)
T 2wvf_A 62 ESKIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHM-DEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLT 139 (148)
T ss_dssp CCEEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEEC-SSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CceEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEEE
Confidence 33457899999988 78888999999998877777433344 3377779999999999999999999999999888753
No 99
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=60.18 E-value=42 Score=27.00 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=54.6
Q ss_pred EEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEE
Q 012043 80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (472)
Q Consensus 80 htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~ 149 (472)
-+|++..+++ .++-.|++.+.....=.|-|=.=-+ .++..+.+|+++|+.+.+..+..+|..+--|..+.
T Consensus 6 Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 6 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 4788888888 6788899999988776665544444 44444689999999999999999999997666554
No 100
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=59.55 E-value=12 Score=30.97 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (472)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+
T Consensus 22 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 45889999999876 568888888999999999999999999996
No 101
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=59.47 E-value=21 Score=31.33 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhccC--ceeeeeeeeecC-CCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 012043 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKL 379 (472)
Q Consensus 325 pGVL~RVtgLFsRRg--yNIeSLtVg~te-~~~iSRiTIVv~gde~~ieQIvkQL~KL 379 (472)
.|+|+|+-.+.-..| |.|..+.||.+. ++...||.+.. .|++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a-~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIG-RDERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEec-CCHHHHHHHHHHHHHc
Confidence 488999988877655 899999999764 45566655433 4788999999999876
No 102
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=59.17 E-value=43 Score=29.77 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=58.3
Q ss_pred eEEEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 78 ~~htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
.--+|++..+++ .++-.+++.+.....=.|-|-.=-+ .++..+.+|++.|+.+.+..+..+|..+--|..+.-
T Consensus 64 ~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl 138 (148)
T 2wvf_A 64 KIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKL 138 (148)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 346888888888 7888899999988776666554444 344446899999999999999999999999888774
No 103
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=56.98 E-value=46 Score=28.83 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=57.6
Q ss_pred eEEEEEEEEcCc-chHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 78 ~~htISIlVeN~-pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
.--+|++..+++ .++-.+++.+.....=.|-|-.=-+ .++..+.+|++.|+.+.+..+..+|..+--|..+.-
T Consensus 52 ~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 52 GFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp EEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 345888888888 7888899999988776666555444 344446899999999999999999999888877663
No 104
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=56.85 E-value=11 Score=31.20 Aligned_cols=45 Identities=20% Similarity=0.024 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 21 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 67 (98)
T 1aps_A 21 CFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSK 67 (98)
T ss_dssp CCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSS
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999999876 5678888889999999999999999999974
No 105
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=56.10 E-value=23 Score=37.59 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=62.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C-hHHHHHHHHHHhcccceEEEEecCC
Q 012043 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 313 ~~htLSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-d-e~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
+++.+++.+-++||-|.+++.++. +-||..+.-- ..+.+-..+.+.++- + .+.+++|++.|++- =..+.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~--g~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYR-FADAKNACIFVGVRLSRGLEERKEILQMLNDG--GYSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEE-CCCSSBCEEEEEEECSSTHHHHHHHHHHHTSS--SCEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEee-ccCCCeEEEEEEEEeCCcHHHHHHHHHHHHhC--CCCeEECCC
Confidence 468999999999999999999998 6899888775 346666778888773 3 68899999999875 246899999
Q ss_pred chHH
Q 012043 391 LPFA 394 (472)
Q Consensus 391 ~~~V 394 (472)
.+..
T Consensus 412 ~~~~ 415 (514)
T 1tdj_A 412 DEMA 415 (514)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8766
No 106
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=54.72 E-value=24 Score=30.98 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhccC--ceeeeEeeeecC-CCcEEEEEEe-CChhhHHHHHHHHhcC
Q 012043 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKL 142 (472)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLtVg~Te-d~~~iTIVV~-gdd~~ieQI~kQL~KL 142 (472)
.|+|+|+..+.-..| |.|..+.+|++. +++.-.|.|. .|++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 589999998887665 899999999765 4456666665 4678899999999877
No 107
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=54.37 E-value=24 Score=28.44 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=40.1
Q ss_pred EEEEEEeCchhHHH----HHHHHHhccCc-eeeeeeeeecCCCCeEEEEEEEeCC----hHHHHHHHHHH
Q 012043 316 TLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLL 376 (472)
Q Consensus 316 tLSilVeN~pGVL~----RVtgLFsRRgy-NIeSLtVg~te~~~iSRiTIVv~gd----e~~ieQIvkQL 376 (472)
...|.|..+||||+ .|.+...+.|| +++++..| -++++.++++ ++.++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~g-------K~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIG-------KYMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEE-------EEEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEE-------EEEEEEecCchHHHHHHHHHHHHHh
Confidence 46788888999995 56688899999 69998886 4577777765 24566666654
No 108
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=53.07 E-value=1.1e+02 Score=26.36 Aligned_cols=76 Identities=5% Similarity=-0.094 Sum_probs=61.7
Q ss_pred CceEEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043 311 GLRSHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 311 ~~~~htLSilVeN~-pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d 387 (472)
+-+--+|++..+++ .++-.+++.+.....=.|-|-.=-+- +.+..=.++++.|+-+.+..+..+|.++-.|..+.-
T Consensus 50 ~~~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 50 TQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp CEEEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CceEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 44457999999988 78888999999998877777443444 337777999999999999999999999988887764
No 109
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=52.65 E-value=14 Score=32.32 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 012043 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
.-|.-+.++|+.++ +.|-...+.++.+++-|+++.|+.|++.|+.
T Consensus 48 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 48 FFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 56999999999885 5688888889999999999999999999973
No 110
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=52.13 E-value=24 Score=28.48 Aligned_cols=54 Identities=11% Similarity=0.439 Sum_probs=38.8
Q ss_pred EEEEEEcCcchHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCC----hhhHHHHHHHH
Q 012043 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQL 139 (472)
Q Consensus 81 tISIlVeN~pGVL~----RIagLFsRRGy-NIeSLtVg~Ted~~~iTIVV~gd----d~~ieQI~kQL 139 (472)
...|.|..|||+|. .|.+...+.|| +++++.+|. .+++.++++ +..++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK-----~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGK-----YMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEE-----EEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-----EEEEEecCchHHHHHHHHHHHHHh
Confidence 35677777899985 56678899999 699888753 577777765 24556666554
No 111
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=51.15 E-value=35 Score=30.21 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEE--EEEEEeCChHHHHHHHHHHhcccceEEEEecCC
Q 012043 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSC--ITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (472)
Q Consensus 323 N~pGVL~RVtgLFsRRgyNIeSLtVg~te-~~~iSR--iTIVv~gde~~ieQIvkQL~KLidVi~V~dlt~ 390 (472)
.-|++|..|..+=...|..++++..++.. .+.+.+ ++|.+.|+=..+-+-...|++|-.++.+.+++-
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i 113 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEI 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 34899999999999999999999988753 345555 567778999999999999999999999988853
No 112
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=48.98 E-value=35 Score=28.11 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=40.8
Q ss_pred EEEEEEEEeCchhHHH----HHHHHHhccCc-eeeeeeeeecCCCCeEEEEEEEeCC-h----HHHHHHHHHH
Q 012043 314 SHTLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGT-D----ESIGKLVQLL 376 (472)
Q Consensus 314 ~htLSilVeN~pGVL~----RVtgLFsRRgy-NIeSLtVg~te~~~iSRiTIVv~gd-e----~~ieQIvkQL 376 (472)
.+...|.|..+||||. .|.+...+.|| +++++.+| -++++.++++ + +.++.+.++|
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~g-------K~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAG-------KYLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEE-------EEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEE-------EEEEEEecCCCHHHHHHHHHHHHhhc
Confidence 3678899999999996 56678899999 69998876 4577777654 2 3455555554
No 113
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=48.95 E-value=33 Score=28.24 Aligned_cols=56 Identities=11% Similarity=0.272 Sum_probs=39.7
Q ss_pred EEEEEEEEcCcchHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHH
Q 012043 79 RHTISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (472)
Q Consensus 79 ~htISIlVeN~pGVL~----RIagLFsRRGy-NIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL 139 (472)
.+...|.|..|||||. .|.+...+.|| +++++.+|. .+++.+++++ +.++.+.++|
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK-----~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGK-----YLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEE-----EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-----EEEEEecCCCHHHHHHHHHHHHhhc
Confidence 4667888888999985 56678899999 698888753 5777777642 3344444444
No 114
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=46.39 E-value=93 Score=27.03 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=57.1
Q ss_pred eEEEEEEEEcCcc-hHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 78 KRHTISVFVGDES-GIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 78 ~~htISIlVeN~p-GVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
..-+|++..+++. ++-.+++.+.....=.|-|-.=-+ .++..+.+|++.|+.+.+..+..+|..+--|..+.-
T Consensus 54 ~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 54 VAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 4568888888876 788899999888776665544444 444456899999999999999999999888887763
No 115
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=42.73 E-value=19 Score=30.97 Aligned_cols=45 Identities=9% Similarity=0.262 Sum_probs=27.1
Q ss_pred hcCcEEEEecC-CEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 012043 182 IFRAKVVDISE-HALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (472)
Q Consensus 182 ~FrAkIVDvs~-~sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~R 231 (472)
...+++.+.++ --++||+..+++|+++|+..|+++= ..|.+.+..
T Consensus 62 ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v-----~~Glvt~e~ 107 (114)
T 1o51_A 62 MHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID-----FDGLVFTAD 107 (114)
T ss_dssp ----------CCCEEEEEEEECHHHHHHHHHHHHTCC-----CCSEEEEEE
T ss_pred EEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEE
Confidence 45567777774 4699999999999999999999752 136555543
No 116
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=42.60 E-value=66 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=39.3
Q ss_pred EEEEEEEcCcchHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-----hhhHHHHHHHH
Q 012043 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (472)
Q Consensus 80 htISIlVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gd-----d~~ieQI~kQL 139 (472)
+...|.|.-|||||. .|.+-+.+.||+ ++++.+|. ++.+.++++ ++.++.+.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-----~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-----SIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-----EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-----EEEEEecCCCHHHHHHHHHHHHHHH
Confidence 345677777999985 578889999996 88887753 577777764 34455555555
No 117
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=41.73 E-value=76 Score=26.51 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=40.3
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHH
Q 012043 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (472)
Q Consensus 315 htLSilVeN~pGVL~----RVtgLFsRRgyN-IeSLtVg~te~~~iSRiTIVv~gd-----e~~ieQIvkQL 376 (472)
+...|.|..+||||+ .|.+-..+.||+ ++++.+|. ++.+.++++ ++.++++.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-------~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-------SIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-------EEEEEecCCCHHHHHHHHHHHHHHH
Confidence 456788888999995 578889999996 99988874 466777764 34455555554
No 118
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=41.58 E-value=27 Score=28.03 Aligned_cols=54 Identities=19% Similarity=0.432 Sum_probs=36.3
Q ss_pred EEEEEEeCchhHHH----HHHHHHhccCc-eeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 012043 316 TLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (472)
Q Consensus 316 tLSilVeN~pGVL~----RVtgLFsRRgy-NIeSLtVg~te~~~iSRiTIVv~gde-----~~ieQIvkQL 376 (472)
...|.|..+||||+ .|.+-..+.|| +++++..| -++++.+++++ +.++.+.++|
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-------k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-------KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-------EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-------EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46788888999996 55677779999 68776654 56777777652 3344555443
No 119
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=41.05 E-value=27 Score=36.12 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=54.0
Q ss_pred EEEEEEEEe-----CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-------HHHHHHHHHHhcccc
Q 012043 314 SHTLSMLVN-----NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-------ESIGKLVQLLHKLID 381 (472)
Q Consensus 314 ~htLSilVe-----N~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde-------~~ieQIvkQL~KLid 381 (472)
+....+.++ +.||.+.||-..|++.|+||+-++-+ + ..|+++++.++ ..++++.++|+++-+
T Consensus 306 ~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~----~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~ 379 (449)
T 2j0w_A 306 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E----VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR 379 (449)
T ss_dssp EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC
T ss_pred CCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C----CeEEEEEeccccchhhHHHHHHHHHHHhccCCe
Confidence 445555554 56899999999999999999999943 2 46899998643 257888888886322
Q ss_pred eEEEEecCCchHHHHhhheeEEecC
Q 012043 382 LHEVQDITHLPFAERELILIKIAVN 406 (472)
Q Consensus 382 Vi~V~dlt~~~~V~REL~LiKV~~~ 406 (472)
| .+ ++.+++|-|--.
T Consensus 380 v-~~---------~~~~a~vsvVG~ 394 (449)
T 2j0w_A 380 V-EV---------EEGLALVALIGN 394 (449)
T ss_dssp E-EE---------EEEEEEEEEEES
T ss_pred E-EE---------eCCeEEEEEECC
Confidence 2 22 245667666543
No 120
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.24 E-value=47 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhccC
Q 012043 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSKF 216 (472)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~--------sl~iE~TG~~~KIdafi~~L~~f 216 (472)
..|.+|.+..+|+| ++.++ .-+|.++|+++.++...+++..+
T Consensus 27 ~~Ik~I~~~TGa~I-~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 27 ENVKAINQQTGAFV-EISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEK 76 (107)
T ss_dssp CHHHHHHHHSSSEE-EECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 47889999999995 67665 37899999999999998888764
No 121
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=40.01 E-value=1.8e+02 Score=25.11 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=61.6
Q ss_pred CCceEEEEEEEEeCch-hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEEe
Q 012043 310 SGLRSHTLSMLVNNTP-GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (472)
Q Consensus 310 ~~~~~htLSilVeN~p-GVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V~d 387 (472)
.+-..-+|++..+++. ++-.+++.+.....=.|-|-.=-+- +.+..=.++++.|+-+.+..+..+|..+-.|..+.-
T Consensus 51 ~~~~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 51 NEEVAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHM-DEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp SSEEEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred cCceEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 3445678999998886 8888999999988877776433344 337777999999999999999999999988887764
No 122
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=39.75 E-value=37 Score=35.16 Aligned_cols=79 Identities=20% Similarity=0.395 Sum_probs=55.9
Q ss_pred eEEEEEEEEc-----CcchHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-------hhHHHHHHHHhcCcee
Q 012043 78 KRHTISVFVG-----DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-------RVLRQVVEQLNKLVNV 145 (472)
Q Consensus 78 ~~htISIlVe-----N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gdd-------~~ieQI~kQL~KLvdV 145 (472)
.+....|.++ +.||.+.||-..|++.|+||+-++-+ + .-++++++.++ ..++++.++|+++-+
T Consensus 305 ~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~--~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~- 379 (449)
T 2j0w_A 305 RRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E--VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR- 379 (449)
T ss_dssp EEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T--TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC-
T ss_pred eCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C--CeEEEEEeccccchhhHHHHHHHHHHHhccCCe-
Confidence 3455555554 56899999999999999999999943 2 34888887543 367888888876221
Q ss_pred eEEEecCCchhhhhheeeEEEeCCC
Q 012043 146 IKVEDISNEPHVERELMLIKLNGDT 170 (472)
Q Consensus 146 ikV~dlt~~~~V~RELaLIKV~~~~ 170 (472)
|+ +++.+++|-|--..
T Consensus 380 --v~-------~~~~~a~vsvVG~g 395 (449)
T 2j0w_A 380 --VE-------VEEGLALVALIGND 395 (449)
T ss_dssp --EE-------EEEEEEEEEEEESS
T ss_pred --EE-------EeCCeEEEEEECCC
Confidence 21 45678888886543
No 123
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=37.39 E-value=28 Score=27.95 Aligned_cols=54 Identities=17% Similarity=0.420 Sum_probs=35.2
Q ss_pred EEEEEEcCcchHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCCh-----hhHHHHHHHH
Q 012043 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (472)
Q Consensus 81 tISIlVeN~pGVL~----RIagLFsRRGy-NIeSLtVg~Ted~~~iTIVV~gdd-----~~ieQI~kQL 139 (472)
...|.|..|||+|. .|.+-..+.|| +++++.+| ..+++.+++++ ..++.+.++|
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-----k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-----KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-----EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-----EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35677777899985 55677779999 67766543 35888777652 3355555554
No 124
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=36.65 E-value=51 Score=34.95 Aligned_cols=116 Identities=16% Similarity=0.303 Sum_probs=80.0
Q ss_pred eEEEEEEEEcCcchHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChhhHHHHHHHHhcCceeeEEEecCC
Q 012043 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISN 153 (472)
Q Consensus 78 ~~htISIlVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~--gdd~~ieQI~kQL~KLvdVikV~dlt~ 153 (472)
+++.+++..-++||.|.+++.++. +-||..+.--.+ +.+ .+.+.++ +..+.+++|++.|++- =..+.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~--g~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA-DAKNACIFVGVRLSRGLEERKEILQMLNDG--GYSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC-CSSBCEEEEEEECSSTHHHHHHHHHHHTSS--SCEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEeecc-CCCeEEEEEEEEeCCcHHHHHHHHHHHHhC--CCCeEECCC
Confidence 468999999999999999999998 689988776532 222 3555554 4367899999999874 246788888
Q ss_pred chhh---hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 012043 154 EPHV---ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI 218 (472)
Q Consensus 154 ~~~V---~RELaLIKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGI 218 (472)
.+.. .|=|+ .-|+. .+ -.+.-+.+|.--.|+-+-.|++.|.+ +.|
T Consensus 412 ~~~~~~h~~~~~--------g~~~~----------~~--~~e~~~~~~fpe~~gal~~fl~~~~~~~~i 460 (514)
T 1tdj_A 412 DEMAKLHVRYMV--------GGRPS----------HP--LQERLYSFEFPESPGALLRFLNTLGTYWNI 460 (514)
T ss_dssp CHHHHHTGGGTC--------CCCCS----------SC--CCCEEEEEECCCCTTHHHHHHHHHCSCCCC
T ss_pred CHHHHHHHHHhh--------CCcCc----------cC--CCceEEEEeCCCCCCHHHHHHHhcCCCceE
Confidence 6644 22211 11110 00 12445788999999999999999985 444
No 125
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=36.48 E-value=1.6e+02 Score=24.60 Aligned_cols=53 Identities=32% Similarity=0.367 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEeCC-CCCHHH-HHHHHHhcCcEEEEecCCEEEE
Q 012043 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGD-TSTWPE-IMWLVDIFRAKVVDISEHALTI 197 (472)
Q Consensus 128 dd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~~~-~~~r~e-I~~l~~~FrAkIVDvs~~sl~i 197 (472)
++..+++|..+|++ |||.=|||.-+ .+++.+ ..+|++.-+|.+|++-...+++
T Consensus 30 T~~vi~ei~~aL~~-----------------~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 30 TEGVLAEIENALNH-----------------HELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp CHHHHHHHHHHHHH-----------------HSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 46677777777743 66544444322 133333 5668999999999998888876
No 126
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=35.83 E-value=61 Score=24.91 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~-----~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 24 G~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 24 GAKINEIRQMSGAQI-KIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp GHHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHCCEE-EEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 347888999999995 6665 46789999999999988877654
No 127
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=34.00 E-value=27 Score=30.55 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=27.1
Q ss_pred hcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 012043 182 IFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (472)
Q Consensus 182 ~FrAkIVDvs~~-sl~iE~TG~~~KIdafi~~L~~fGIlEvaRTG~iAl~R 231 (472)
++.+++.+.+.+ -++||+..+++||++|+..|+++= ..|.+.+..
T Consensus 58 ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~lv-----~~GlVt~e~ 103 (127)
T 2dcl_A 58 VHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMI-----KDGMITVEP 103 (127)
T ss_dssp ----------CCCEEEEEEEEEHHHHHHHHHHHTTTC-----SSSEEEEEE
T ss_pred EecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEE
Confidence 456777888754 699999999999999999999861 145555543
No 128
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=33.34 E-value=1.8e+02 Score=24.74 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|-+.++|+| ++.++ .-++.++|+++.++...+++..
T Consensus 110 G~~I~~i~~~tg~~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 156 (164)
T 2jvz_A 110 GEMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156 (164)
T ss_dssp SHHHHHHHHHTCCEE-EECCCCTTSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHCCeE-EEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHH
Confidence 346889999999996 56553 5789999999999988887754
No 129
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=33.22 E-value=1.4e+02 Score=24.86 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=24.9
Q ss_pred eeEEecCcc---cHHH-HHHHHHHhCcEEEEecCChhhh
Q 012043 400 LIKIAVNTA---ARRD-VLDIAKIFRARAVDVSDHTITL 434 (472)
Q Consensus 400 LiKV~~~~~---~r~e-I~~ia~iFrakIVDvs~~siti 434 (472)
||||++... ++.+ ..+||+.-+|.+|++-..++++
T Consensus 46 LIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 46 LIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 566665433 3433 5568999999999998887765
No 130
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=33.01 E-value=1.4e+02 Score=24.48 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 012043 327 VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (472)
Q Consensus 327 VL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLidVi~V 385 (472)
++++++.-|. -.+||-.=++....+..+-+|++-+.|+++.+++.++.|++.---++|
T Consensus 37 iIs~l~~~~~-v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 37 LLSETARRFN-VNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp HHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHC-CCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 7777666553 337887777778888899999999999999999999999877433333
No 131
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=32.14 E-value=98 Score=24.12 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhccC
Q 012043 174 PEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSKF 216 (472)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~-----~sl~iE~TG~~~KIdafi~~L~~f 216 (472)
..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..+
T Consensus 26 ~~Ik~I~~~sga~I-~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 72 (82)
T 1wvn_A 26 ANINEIRQMSGAQI-KIANPVEGSSGRQVTITGSAASISLAQYLINAR 72 (82)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCEE-EEecCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Confidence 47889999999995 6765 266899999999999888877653
No 132
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=31.05 E-value=1e+02 Score=24.04 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 26 G~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 26 GQRIKQIRHESGASI-KIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp GHHHHHHHHHHCCEE-EECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCEE-EEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 457899999999994 56553 4689999999999988777654
No 133
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=30.66 E-value=80 Score=25.36 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|.+..+|+ |++.++ .-++.++|+++.++...+++..
T Consensus 34 G~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 34 GEQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp SHHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 34788999999998 566664 3688999999999888777764
No 134
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=28.83 E-value=1.2e+02 Score=22.98 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~--------sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 22 G~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 22 GKTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp THHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 347888999999996 67654 4789999999999988887754
No 135
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=27.31 E-value=1.1e+02 Score=24.37 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|-+..+|+ |++.+. .-++.++|+++.++...+++..
T Consensus 33 G~~Ik~I~~~tga~-I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 33 GQRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp GHHHHHHHHHTCCE-EEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHhCCe-EEecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 34788899999998 567653 5789999999999887777654
No 136
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=26.86 E-value=1.1e+02 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=36.6
Q ss_pred ChhhHHHHHHHHhcCceeeEEEecCCchhhhhheeeEEEeCC-CCCHH-HHHHHHHhcCcEEEEecCCEEEEE
Q 012043 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGD-TSTWP-EIMWLVDIFRAKVVDISEHALTIE 198 (472)
Q Consensus 128 dd~~ieQI~kQL~KLvdVikV~dlt~~~~V~RELaLIKV~~~-~~~r~-eI~~l~~~FrAkIVDvs~~sl~iE 198 (472)
++..+++|-.+|++ |||.=|||.-+ .+++. -..+|++.-+|.+|++-..++++=
T Consensus 29 Te~vi~ei~~aL~~-----------------hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLY 84 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------RELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIY 84 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEE
Confidence 46777777777744 66544444322 12333 356788999999999998888774
No 137
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=26.76 E-value=55 Score=28.33 Aligned_cols=126 Identities=10% Similarity=0.193 Sum_probs=67.9
Q ss_pred EEEEEEcCcchHHHHHHHHHhccCceeee--------EeeeecCCCc--EEEEEEeCChhhHHHHHHHHhcCceeeEEEe
Q 012043 81 TISVFVGDESGIINRIAGVFARRGYNIES--------LAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (472)
Q Consensus 81 tISIlVeN~pGVL~RIagLFsRRGyNIeS--------LtVg~Ted~~--~iTIVV~gdd~~ieQI~kQL~KLvdVikV~d 150 (472)
++.+++.+. .+..+..+.|-||.. +.+.....++ -=.+++.|+.+.+......+..++.-.. .
T Consensus 4 ~~~~~ip~~-----~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~--~ 76 (163)
T 3krm_A 4 MVQVFIPAQ-----AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEEN--F 76 (163)
T ss_dssp EEEEEEEGG-----GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT--S
T ss_pred EEEEEechh-----hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc--c
Confidence 445555443 344555566655543 2344432222 1234556777666666555544332110 0
Q ss_pred cCCchhhhhheeeEEEeCCC------CCHHHHHHHHHhcCcEEEEecCCE-------EEEEEeCChhHHHHHHHHhcc
Q 012043 151 ISNEPHVERELMLIKLNGDT------STWPEIMWLVDIFRAKVVDISEHA-------LTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 151 lt~~~~V~RELaLIKV~~~~------~~r~eI~~l~~~FrAkIVDvs~~s-------l~iE~TG~~~KIdafi~~L~~ 215 (472)
..+.... ...+-+.|..+. ..-..|-+|.+.++|+| ++.++. -++.++|+++.++...+++..
T Consensus 77 ~~~~~~~-~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 77 FGPKEEV-KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SCSSCCC-CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred cccccCC-ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 1111100 011223343321 23456889999999998 676654 389999999999988777653
No 138
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=26.72 E-value=14 Score=33.43 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=0.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 012043 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (472)
Q Consensus 317 LSilVeN~pGVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~ 377 (472)
+.+.+.+.||.|.+++.++.+.|.++-++...+.++ +..++++-+.+ ..+..+++.|+
T Consensus 141 l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~~-~~~~v~~~v~~--~~~~~i~~~le 198 (213)
T 1vr9_A 141 FSVLLEDKPGELRKVVDALALSNINILSVITTRSGD-GKREVLIKVDA--VDEGTLIKLFE 198 (213)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecCC-CEEEEEEEEcc--CCHHHHHHHHH
Confidence 445566899999999999999999998876554444 56666666664 36677777775
No 139
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=26.69 E-value=86 Score=26.17 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|.+.++|+| ++.++ .-+|.++|+++.++...++++.
T Consensus 30 G~~Ik~I~~~TGakI-~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 30 GEMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76 (106)
T ss_dssp THHHHHHHHHHTCEE-EECSSCSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCcEE-EEecCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 457889999999985 55543 2478999999999998888765
No 140
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=26.58 E-value=1e+02 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhc
Q 012043 174 PEIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLS 214 (472)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~s---l~iE~TG~~~KIdafi~~L~ 214 (472)
..|-+|-+..+|+| ++.++. -++.++|+++.+....+++.
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 25 ESVKKMREESGARI-NISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp HHHHHHHHHHCCEE-EECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEE-EEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 47889999999995 777664 37999999999988777654
No 141
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=25.54 E-value=1.6e+02 Score=23.12 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 012043 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~--------sl~iE~TG~~~KIdafi~~L~~ 215 (472)
..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 46888999999996 67653 4789999999999988877654
No 142
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=24.71 E-value=1.9e+02 Score=24.46 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHhcccceEEEEecCCchHHHHhhheeEEecCc---ccHH-HHHHHHHHhCcEEEEecCChhhh
Q 012043 365 TDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNT---AARR-DVLDIAKIFRARAVDVSDHTITL 434 (472)
Q Consensus 365 de~~ieQIvkQL~KLidVi~V~dlt~~~~V~REL~LiKV~~~~---~~r~-eI~~ia~iFrakIVDvs~~siti 434 (472)
++..+++|-.+|++ || ||||++.. .++. -..+||+.-+|.+|++-..++++
T Consensus 29 Te~vi~ei~~aL~~-----------------hE--LIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VL 83 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------RE--LIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVI 83 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SS--EEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CC--cEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 46666677666665 44 45555443 3343 35568899999999998777665
No 143
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=23.67 E-value=2.7e+02 Score=22.32 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 326 GVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
.++++++.-|. -.+||-.=.+....+..+-+|++-+.|+++.+++.++.|++.-
T Consensus 38 pvis~l~~~~~-v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (100)
T 2qsw_A 38 PIISHIVQEYQ-VEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLR 91 (100)
T ss_dssp CHHHHHHHHHT-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcC
Confidence 46777776663 4577777777777778899999999999989999999997764
No 144
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=23.11 E-value=80 Score=24.17 Aligned_cols=40 Identities=25% Similarity=0.431 Sum_probs=31.6
Q ss_pred HHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhcc
Q 012043 175 EIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 175 eI~~l~~~FrAkIVDvs~~s---l~iE~TG~~~KIdafi~~L~~ 215 (472)
.|.+|.+.++++ +++.++. =.+.++|+++.++...+.+..
T Consensus 26 ~I~~I~e~tg~~-I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 26 NINRIKDQYKVS-VRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp HHHHHHHHTCCE-EECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCE-EEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 678999999999 5776654 267788999999988877754
No 145
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.07 E-value=3.3e+02 Score=22.01 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhccc
Q 012043 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLI 380 (472)
Q Consensus 326 GVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~g-de~~ieQIvkQL~KLi 380 (472)
.++++++.-|. -.+||-.=.+.+..+..+-+|++-+.| +++.+++.++.|++.-
T Consensus 35 PvIs~l~~~~~-v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~ 89 (98)
T 3ced_A 35 PIVSSLSTAYD-IKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQ 89 (98)
T ss_dssp HHHHHHHHHHT-CCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHC-CcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 45666666663 467887777778777889999999999 8888999999997664
No 146
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=20.96 E-value=2.8e+02 Score=22.31 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 012043 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (472)
Q Consensus 326 GVL~RVtgLFsRRgyNIeSLtVg~te~~~iSRiTIVv~gde~~ieQIvkQL~KLi 380 (472)
.++++++.-|. -.+||-.=++.+..+..+-+|++-+.|+++.+++.++.|++.-
T Consensus 38 pvis~l~~~~~-v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (101)
T 2qrr_A 38 PLMSQISRKYN-IDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENN 91 (101)
T ss_dssp CHHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 45666665553 3467777677777778899999999999989999999997664
No 147
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=20.84 E-value=1.4e+02 Score=24.49 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCcEEEEecC-------CEEEEEEeCChhHHHHHHHHhcc
Q 012043 173 WPEIMWLVDIFRAKVVDISE-------HALTIEVTGDPGKMVAVQRNLSK 215 (472)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~-------~sl~iE~TG~~~KIdafi~~L~~ 215 (472)
-..|.+|-+.++|+| ++.+ +.=+|.++|+++.++...+++..
T Consensus 34 G~~Ik~I~~~tga~I-~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 34 GETIRSICKASGAKI-TCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp SHHHHHHHHHHCCEE-EECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEE-EEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 346888999999995 6765 46789999999999888777764
No 148
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=20.17 E-value=2.5e+02 Score=29.44 Aligned_cols=128 Identities=10% Similarity=0.124 Sum_probs=85.1
Q ss_pred EEEEEEEEcCcc--hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhhHHHHHHHHhcCceeeEEEecCCch
Q 012043 79 RHTISVFVGDES--GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (472)
Q Consensus 79 ~htISIlVeN~p--GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gdd~~ieQI~kQL~KLvdVikV~dlt~~~ 155 (472)
+-.|.+.+-|.. .-+.....-|..-.| + -+|+.-..+.+.+... +|.+.+..+++.+.+-+||==+-|-.+-+
T Consensus 91 ~p~ia~~V~D~~~e~~~~~~~~~~~~~~~--~--rvg~~~~~D~ial~~~s~dpe~~~~vVk~V~e~~dvPL~IDS~dpe 166 (446)
T 4djd_C 91 ETAIAIQVSDNLSSEELKAKVEAINGLNF--D--RVGQHYTIQAIAIRHDADDPAAFKAAVASVAAATQLNLVLMADDPD 166 (446)
T ss_dssp CCEEEEEEETTSCHHHHHHHHHHHTTCCE--E--ETTEEECCCEEEEECCSSSTHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHH--H--HHHHhccCcEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEecCCHH
Confidence 446777777752 223222333433111 1 1555555566777754 67788999999999988876666655555
Q ss_pred hhhhheeeEE-----E-eCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcE
Q 012043 156 HVERELMLIK-----L-NGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIK 219 (472)
Q Consensus 156 ~V~RELaLIK-----V-~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIl 219 (472)
.++.=|-..+ | .++.++..++..++..|++.|+-.++ +-+.+..+++.+..+||.
T Consensus 167 vleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~---------dl~~lkelv~~a~~~GI~ 227 (446)
T 4djd_C 167 VLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGN---------GLEELAELVDKIVALGHK 227 (446)
T ss_dssp HHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECS---------SHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEec---------cHHHHHHHHHHHHHCCCC
Confidence 4444332221 1 24456777999999999999999876 778888899999999994
Done!