Query 012044
Match_columns 472
No_of_seqs 263 out of 3895
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:01:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-40 2.9E-45 349.3 21.3 411 54-470 90-553 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-40 3.4E-45 348.8 19.7 409 56-470 139-577 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.4E-36 1.6E-40 268.9 4.2 386 58-448 53-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.2E-35 1.6E-39 262.5 2.0 379 78-460 48-438 (873)
5 KOG0618 Serine/threonine phosp 99.9 2.6E-27 5.5E-32 225.0 -4.0 409 20-449 10-487 (1081)
6 KOG0444 Cytoskeletal regulator 99.9 2.4E-27 5.2E-32 216.2 -4.6 361 56-427 6-375 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 7.8E-28 1.7E-32 207.9 -8.8 91 368-460 431-550 (565)
8 KOG0444 Cytoskeletal regulator 99.9 3.5E-27 7.7E-32 215.2 -5.5 340 56-406 31-372 (1255)
9 KOG0618 Serine/threonine phosp 99.9 6.3E-25 1.4E-29 209.0 -1.6 381 56-452 67-514 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 1.9E-24 4.2E-29 187.1 -6.5 356 59-428 93-542 (565)
11 PLN03210 Resistant to P. syrin 99.8 3.3E-20 7.2E-25 195.6 17.0 352 57-425 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.8 6.9E-20 1.5E-24 193.3 18.4 339 51-407 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.8 1E-21 2.2E-26 170.0 -1.2 279 55-335 65-357 (498)
14 cd00116 LRR_RI Leucine-rich re 99.8 2.9E-18 6.4E-23 157.8 21.3 65 322-386 163-235 (319)
15 cd00116 LRR_RI Leucine-rich re 99.8 4.1E-18 9E-23 156.8 20.9 229 178-406 21-288 (319)
16 KOG4237 Extracellular matrix p 99.7 3.4E-19 7.4E-24 154.5 -2.3 105 183-287 70-175 (498)
17 PRK15387 E3 ubiquitin-protein 99.7 1E-15 2.2E-20 150.7 13.0 241 181-458 223-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 2.3E-14 5.1E-19 141.2 13.1 219 180-434 242-465 (788)
19 KOG1909 Ran GTPase-activating 99.6 2.5E-14 5.5E-19 122.8 11.4 250 198-458 24-320 (382)
20 KOG4341 F-box protein containi 99.6 1.3E-14 2.8E-19 127.4 8.9 300 57-379 138-459 (483)
21 PRK15370 E3 ubiquitin-protein 99.5 5.2E-14 1.1E-18 139.6 11.2 251 156-458 179-435 (754)
22 KOG1909 Ran GTPase-activating 99.5 4.3E-13 9.3E-18 115.4 12.4 235 174-408 24-310 (382)
23 KOG4341 F-box protein containi 99.5 5.3E-14 1.1E-18 123.7 4.7 208 33-240 140-358 (483)
24 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 130.5 10.5 264 131-426 178-444 (754)
25 KOG4658 Apoptotic ATPase [Sign 99.4 3.2E-14 6.9E-19 143.3 -2.2 346 3-357 452-828 (889)
26 KOG2120 SCF ubiquitin ligase, 99.4 9E-13 1.9E-17 110.9 6.3 263 1-287 100-374 (419)
27 KOG0617 Ras suppressor protein 99.3 6.2E-14 1.3E-18 108.1 -6.0 159 79-244 31-189 (264)
28 KOG3207 Beta-tubulin folding c 99.2 2.2E-12 4.9E-17 114.2 2.1 203 250-452 119-340 (505)
29 KOG2120 SCF ubiquitin ligase, 99.2 5.5E-12 1.2E-16 106.3 4.0 182 58-240 186-375 (419)
30 KOG3207 Beta-tubulin folding c 99.2 1.2E-12 2.7E-17 115.8 -0.3 228 61-289 97-339 (505)
31 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 94.5 4.6 119 324-446 19-148 (175)
32 COG5238 RNA1 Ran GTPase-activa 99.1 1.1E-09 2.4E-14 91.4 10.5 133 322-454 155-319 (388)
33 KOG0617 Ras suppressor protein 99.1 1.2E-12 2.5E-17 101.1 -7.3 156 56-219 32-188 (264)
34 PF14580 LRR_9: Leucine-rich r 99.0 8.1E-11 1.8E-15 95.1 2.0 122 345-470 16-146 (175)
35 KOG1259 Nischarin, modulator o 98.9 6.8E-10 1.5E-14 94.0 1.7 126 323-452 283-413 (490)
36 COG5238 RNA1 Ran GTPase-activa 98.9 3.5E-08 7.5E-13 82.6 11.6 151 320-470 88-278 (388)
37 KOG4658 Apoptotic ATPase [Sign 98.9 8.7E-10 1.9E-14 111.7 2.6 106 106-213 545-651 (889)
38 KOG1259 Nischarin, modulator o 98.7 3.6E-09 7.7E-14 89.7 1.7 130 202-337 282-412 (490)
39 KOG2982 Uncharacterized conser 98.6 3.3E-08 7.1E-13 83.9 4.0 229 79-308 43-287 (418)
40 PF13855 LRR_8: Leucine rich r 98.6 1.3E-08 2.8E-13 67.5 0.1 60 348-407 1-60 (61)
41 PLN03150 hypothetical protein; 98.5 3.6E-07 7.7E-12 90.9 7.7 107 58-166 419-526 (623)
42 KOG1859 Leucine-rich repeat pr 98.5 7.2E-09 1.6E-13 98.2 -4.1 125 326-454 166-295 (1096)
43 KOG3665 ZYG-1-like serine/thre 98.4 3.3E-07 7.1E-12 90.9 6.6 59 82-140 123-182 (699)
44 PF13855 LRR_8: Leucine rich r 98.4 1.1E-07 2.3E-12 63.0 2.2 41 174-214 19-59 (61)
45 PLN03150 hypothetical protein; 98.4 5.5E-07 1.2E-11 89.6 7.8 85 326-410 420-504 (623)
46 COG4886 Leucine-rich repeat (L 98.4 3.8E-07 8.2E-12 86.5 4.9 198 61-270 97-295 (394)
47 KOG1947 Leucine rich repeat pr 98.4 4.6E-07 1E-11 88.7 5.6 237 103-359 185-438 (482)
48 KOG3665 ZYG-1-like serine/thre 98.3 6.6E-07 1.4E-11 88.8 5.7 151 56-210 121-281 (699)
49 KOG0532 Leucine-rich repeat (L 98.3 1.1E-08 2.4E-13 94.4 -6.9 178 254-458 77-254 (722)
50 COG4886 Leucine-rich repeat (L 98.3 8.9E-07 1.9E-11 84.0 5.7 133 249-387 160-292 (394)
51 KOG1947 Leucine rich repeat pr 98.3 1.3E-06 2.9E-11 85.4 6.6 133 153-285 186-330 (482)
52 KOG2982 Uncharacterized conser 98.3 5.4E-07 1.2E-11 76.7 2.8 105 157-262 47-156 (418)
53 KOG0531 Protein phosphatase 1, 98.2 1.5E-07 3.2E-12 89.4 -1.1 212 226-451 70-290 (414)
54 KOG0531 Protein phosphatase 1, 98.2 6.2E-08 1.4E-12 91.9 -3.9 241 201-453 69-320 (414)
55 KOG0532 Leucine-rich repeat (L 98.2 5.2E-08 1.1E-12 90.0 -5.2 191 60-262 78-270 (722)
56 KOG1859 Leucine-rich repeat pr 98.1 1.8E-07 4E-12 89.0 -3.4 184 50-241 77-292 (1096)
57 KOG1644 U2-associated snRNP A' 97.7 3.4E-05 7.5E-10 62.2 3.0 97 325-423 43-149 (233)
58 PF12799 LRR_4: Leucine Rich r 97.6 6.1E-05 1.3E-09 45.5 2.7 38 414-452 1-38 (44)
59 PF12799 LRR_4: Leucine Rich r 97.6 0.00015 3.2E-09 43.7 4.2 36 373-409 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.5 9.9E-05 2.2E-09 59.6 4.2 81 58-141 43-123 (233)
61 KOG4579 Leucine-rich repeat (L 97.5 2E-05 4.4E-10 59.3 0.2 100 326-426 29-135 (177)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00017 3.6E-09 56.3 4.4 83 76-163 7-89 (129)
63 KOG2123 Uncharacterized conser 97.4 3E-05 6.6E-10 65.7 -0.3 113 347-465 18-143 (388)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00023 5.1E-09 55.4 4.6 106 100-212 6-111 (129)
65 KOG2123 Uncharacterized conser 97.4 5E-05 1.1E-09 64.4 0.8 98 371-470 18-123 (388)
66 KOG4579 Leucine-rich repeat (L 97.4 5.7E-05 1.2E-09 57.0 0.7 107 278-386 29-137 (177)
67 KOG3864 Uncharacterized conser 97.3 0.00016 3.5E-09 58.5 2.7 84 58-141 102-186 (221)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00018 4E-09 60.7 1.4 85 200-284 61-151 (260)
69 KOG2739 Leucine-rich acidic nu 97.1 0.0002 4.3E-09 60.5 1.4 83 324-408 43-128 (260)
70 PRK15386 type III secretion pr 96.9 0.0016 3.6E-08 60.0 5.4 138 247-406 47-187 (426)
71 KOG3864 Uncharacterized conser 96.9 0.00081 1.7E-08 54.6 2.9 104 349-469 102-209 (221)
72 PRK15386 type III secretion pr 96.5 0.0072 1.6E-07 55.9 6.4 137 292-448 44-187 (426)
73 KOG4308 LRR-containing protein 96.0 0.00098 2.1E-08 63.7 -1.8 194 254-447 89-327 (478)
74 KOG4308 LRR-containing protein 95.6 0.0015 3.4E-08 62.4 -2.2 183 278-460 89-312 (478)
75 PF13516 LRR_6: Leucine Rich r 94.6 0.015 3.3E-07 29.6 0.8 21 438-458 2-22 (24)
76 smart00367 LRR_CC Leucine-rich 94.3 0.052 1.1E-06 28.3 2.4 24 80-103 1-24 (26)
77 PF13516 LRR_6: Leucine Rich r 93.1 0.036 7.7E-07 28.2 0.5 22 413-434 1-22 (24)
78 smart00367 LRR_CC Leucine-rich 93.1 0.095 2.1E-06 27.2 2.2 23 437-459 1-24 (26)
79 PF00560 LRR_1: Leucine Rich R 92.5 0.045 9.8E-07 27.2 0.4 13 415-427 1-13 (22)
80 smart00368 LRR_RI Leucine rich 91.1 0.19 4.2E-06 26.7 1.9 23 438-460 2-24 (28)
81 PF13504 LRR_7: Leucine rich r 88.2 0.45 9.8E-06 21.8 1.7 10 416-425 3-12 (17)
82 KOG3763 mRNA export factor TAP 87.3 0.38 8.1E-06 45.9 2.1 38 369-406 215-254 (585)
83 smart00369 LRR_TYP Leucine-ric 82.1 1.4 3E-05 22.7 2.0 20 372-391 2-21 (26)
84 smart00370 LRR Leucine-rich re 82.1 1.4 3E-05 22.7 2.0 20 372-391 2-21 (26)
85 KOG3763 mRNA export factor TAP 61.3 9 0.00019 37.0 3.4 80 322-402 216-307 (585)
86 smart00365 LRR_SD22 Leucine-ri 60.9 7.9 0.00017 20.1 1.7 12 415-426 3-14 (26)
87 KOG0473 Leucine-rich repeat pr 58.1 0.16 3.4E-06 42.7 -7.6 82 56-142 41-122 (326)
88 KOG4242 Predicted myosin-I-bin 53.3 49 0.0011 31.6 6.6 240 204-448 165-450 (553)
89 smart00364 LRR_BAC Leucine-ric 40.4 18 0.00038 18.8 1.0 15 372-386 2-16 (26)
90 KOG0473 Leucine-rich repeat pr 34.5 1.6 3.4E-05 37.0 -5.3 60 76-139 37-96 (326)
91 KOG1665 AFH1-interacting prote 21.8 1.5E+02 0.0033 25.1 4.0 18 439-456 272-289 (302)
92 PF14162 YozD: YozD-like prote 21.3 1.1E+02 0.0024 18.8 2.2 19 4-22 11-29 (57)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-40 Score=349.33 Aligned_cols=411 Identities=20% Similarity=0.212 Sum_probs=203.6
Q ss_pred hcCCCccEEEeecCCCChhHHHHh-hCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 132 (472)
...++++.|++++|.+.+.+|..+ ..+++|++|++++| .+....+. ..+++|++|++++|.+ ....|..++++++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~Ls~n~~-~~~~p~~~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLDLSNNML-SGEIPNDIGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEECcCCcc-cccCChHHhcCCC
Confidence 346677777777777766666544 36666666666665 33322111 2344455555554442 2233444444555
Q ss_pred CcEEeccCcccccccccccccCCCCceEeecCCCC-----------------------CCccccccccCCCCCCEEEeec
Q 012044 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISC 189 (472)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------~~~~~~~~l~~~~~L~~L~l~~ 189 (472)
|++|++++|......+..+.++++|++|++++|.. ..+..+..+..+++|+.|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 55555544433333333444444444444444321 2222333334444444444444
Q ss_pred cccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHH
Q 012044 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269 (472)
Q Consensus 190 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 269 (472)
|.+....+..++++++|++|++.+|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 44443333444444444444444444433333444444444444444444443334444444445555554444444444
Q ss_pred HHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCC
Q 012044 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349 (472)
Q Consensus 270 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 349 (472)
..+..+++|+.|++.+|.+.+..+..++.+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 44444555555555555444333444444455555555555444333334444444444444444444444444555556
Q ss_pred CCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCc----------------------
Q 012044 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---------------------- 407 (472)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~---------------------- 407 (472)
|++|++++|.+++..+..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence 6666666665554444555555666666666665555544444445555555554444
Q ss_pred -cccc------ccccCceeeccCCccChhHHhhccCCccccccccccccCCHHHHHHhhccCCCCceecC
Q 012044 408 -LTDA------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 470 (472)
Q Consensus 408 -~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~l~~l~ 470 (472)
+.+. .+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++.....+. .+++|+.+.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ 553 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLD 553 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh--CcccCCEEE
Confidence 3322 345566666666666655566666666677777776666654333332 356666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-40 Score=348.77 Aligned_cols=409 Identities=20% Similarity=0.186 Sum_probs=291.3
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
.+++++|++++|.+.+..|..++.+++|++|++++| .+....+..+.++++|++|++++|.+ ....|..+.++++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCC-cCcCChHHcCcCCccE
Confidence 456777777777777677777888888888888887 56666677788888888888888874 3456778888888888
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
|++++|......+..+..+++|++|++++|. ..+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 8888876655566677888888888888754 444556677778888888888887776666667777888888888777
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHH
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (472)
+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 76666667777777788877777776666666777777777777777776666666666777777777766654443444
Q ss_pred hhCCCCCCEEecCCCccCchhHHH------------------------hhCCCCCCEeeecCCCCChhHHHhhcCCCCCC
Q 012044 296 LTGLCNLKCLELSDTQVGSSGLRH------------------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (472)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~------------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (472)
+..+++|+.|++++|.+....+.. +..+++|+.+++++|.+.+..+..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 444444555555554444444444 44445555555555544443333344455555
Q ss_pred EEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCc
Q 012044 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSR 425 (472)
Q Consensus 352 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~ 425 (472)
.|++++|.+.+..+..+ ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+... .+++|+.|++++|.
T Consensus 456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 66665555544333222 346788888888888888888888999999999999998754 68999999999999
Q ss_pred cChhHHhhccCCccccccccccccCCHHHHHHhhccCCCCceecC
Q 012044 426 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 470 (472)
Q Consensus 426 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~l~~l~ 470 (472)
+.+..|..+..+++|+.|++++|+++...-..+. .++.|+.+.
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~l~ 577 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG--NVESLVQVN 577 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHh--cCcccCEEe
Confidence 9999999999999999999999998764433342 356666654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-36 Score=268.85 Aligned_cols=386 Identities=25% Similarity=0.276 Sum_probs=323.3
Q ss_pred CccEEEeecCCCChhHHHHhhCC--CCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
.-+.|+.++..+.......+..+ +.-+.|++++| .+....+..|.++++|+++++..|.. ..+|..-+...+|+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence 44556777766654333333322 45567999997 78999999999999999999999975 556665566778999
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
|++.+|-......+.+..++.||+||++.+ .+.......+..-.++++|++++|.++......|..+.+|..|.++.|+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 999998766666678889999999999984 4454555566666789999999999998888889999999999999999
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHH
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (472)
++...+..|..+++|+.|++..|.+...-...|.++++|+.|.+..|.+....-..|..+.++++|++..|++.......
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 99988888999999999999999988776678999999999999999887644456888999999999999887666666
Q ss_pred hhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCC
Q 012044 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (472)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 375 (472)
+.++..|+.|+++.|.+.......+..+++|++|+++.|.+++..+..+..+..|++|.++.|.++.....+|..+.+|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 77889999999999999888888889999999999999999988888888889999999999999988778888899999
Q ss_pred EEeCCCCccChh---HHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccChhHHhhccCCccccccccc
Q 012044 376 HLDLFGARITDS---GAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 446 (472)
Q Consensus 376 ~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 446 (472)
.|++++|.+... ....+..+++|+.|++.||++..+ ++..||.|++.+|.+....+..|.++ .|++|.+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 999999977643 345677899999999999998877 78999999999999999999999888 89999887
Q ss_pred cc
Q 012044 447 SC 448 (472)
Q Consensus 447 ~~ 448 (472)
.-
T Consensus 448 Ss 449 (873)
T KOG4194|consen 448 SS 449 (873)
T ss_pred cc
Confidence 53
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-35 Score=262.53 Aligned_cols=379 Identities=22% Similarity=0.296 Sum_probs=322.3
Q ss_pred hCCC-CCCeeecCCccccChhhHHHhhCC--CCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccC
Q 012044 78 KDCS-NLQSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154 (472)
Q Consensus 78 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 154 (472)
+.|+ +-+.|+.++. .+...+...+... +.-+.|++++|. +....+..|.++++|+++++..| .+...|......
T Consensus 48 a~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~s 124 (873)
T KOG4194|consen 48 ATCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHES 124 (873)
T ss_pred CcCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhhcccccccc
Confidence 3454 3445666664 5555444444332 345679999997 46677888999999999999986 355555555566
Q ss_pred CCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEe
Q 012044 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (472)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (472)
.+|+.|++..+ .+.......++.++.|+.|+++.|.++......|..-.++++|++++|.++..-...|..+.+|..|.
T Consensus 125 ghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 77999999984 45556677888899999999999999988888888889999999999999987778899999999999
Q ss_pred ccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCc
Q 012044 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (472)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (472)
+++|.++..+...|..+++|+.|++..|.+...-...|.++++|+.|.+..|.+....-..|..+.++++|++..|.+..
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 99999999999999999999999999998765445568999999999999998876555678889999999999999887
Q ss_pred hhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhc
Q 012044 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (472)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 394 (472)
..-.++.+++.|+.|++++|.+....+..|..+++|++|+++.|.++......|..+..|++|.++.|.++......|..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 77777789999999999999999999999999999999999999999888888999999999999999999988888999
Q ss_pred CCCCcEEEecCCccccc---------ccccCceeeccCCccChhHHhhccCCccccccccccccCCHHHHHHhhc
Q 012044 395 FKNLRSLEICGGGLTDA---------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 460 (472)
Q Consensus 395 ~~~L~~L~l~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 460 (472)
+++|++|+|++|.+.-. ++++|++|.+.+|++....-..|..++.|++|++.+|.+......++..
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 99999999999987654 7899999999999999987788999999999999999987766665543
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-27 Score=225.04 Aligned_cols=409 Identities=22% Similarity=0.219 Sum_probs=199.0
Q ss_pred cCHHHHHHhcCCccceEecCCCCCCChHHHHHHHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhH
Q 012044 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99 (472)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 99 (472)
.+.+....+.+-.++++.+...--+... .+.+..+. ++++|+++++.+. ..|..+...++|++|+++.+ .+.. .+
T Consensus 10 l~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v-~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~-vp 84 (1081)
T KOG0618|consen 10 LELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRV-KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRS-VP 84 (1081)
T ss_pred CcccchhhccHHHHHhhhccccccccCc-hHHhhhee-eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhh-Cc
Confidence 3344444443333555555433222211 22333333 4999999998886 46777888889999999986 3433 34
Q ss_pred HHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCC-----------
Q 012044 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI----------- 168 (472)
Q Consensus 100 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------- 168 (472)
....++.+|+++.|.+|.. ...|..+..+.+|++|+++.|. ....|..+..+..++.+..+++...
T Consensus 85 ~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~ 161 (1081)
T KOG0618|consen 85 SSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKL 161 (1081)
T ss_pred hhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhh
Confidence 6677888999999998864 6778889999999999999875 3344444445555555555543111
Q ss_pred -------CccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCC
Q 012044 169 -------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (472)
Q Consensus 169 -------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 241 (472)
.+.....+..+.+ .+++.+|.+... .+..+++|+.+....+++... --..++++.|+...|.+.
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLT 232 (1081)
T ss_pred hhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceE----EecCcchheeeeccCcce
Confidence 1111111111111 244444433211 112222222222222211110 001122333333333222
Q ss_pred hhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHH----------------------HHHhhCC
Q 012044 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG----------------------LVNLTGL 299 (472)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~~ 299 (472)
... .-..-.+|++++++.+.++.. |.++..+.+|+.+....|.+.... +......
T Consensus 233 ~~~--~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~ 309 (1081)
T KOG0618|consen 233 TLD--VHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGL 309 (1081)
T ss_pred eec--cccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccc
Confidence 100 001123445555555544432 244445555555555444432111 1111224
Q ss_pred CCCCEEecCCCccCchhHHHhh-------------------------CCCCCCEeeecCCCCChhHHHhhcCCCCCCEEE
Q 012044 300 CNLKCLELSDTQVGSSGLRHLS-------------------------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (472)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 354 (472)
..|++|++..|.+...+...+. ..+.|+.|.+.+|.+++.....+.+++.|+.|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 4555555555554433222221 122344455555555554444444555555555
Q ss_pred cCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc----ccccCceeeccCCccChhH
Q 012044 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GLTGLVSLNVSNSRITSAG 430 (472)
Q Consensus 355 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~L~~L~l~~n~~~~~~ 430 (472)
+++|.+.......+.+++.|++|++++|.++.. |..+..+..|++|...+|.+... .++.|+.+|++.|+++...
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhh
Confidence 555555544444445555555555555555543 34444555555555555544433 4556666666666655544
Q ss_pred HhhccCCcccccccccccc
Q 012044 431 LRHLKPLKNLRSLTLESCK 449 (472)
Q Consensus 431 ~~~l~~~~~L~~L~l~~~~ 449 (472)
...-...+.||+||+++|.
T Consensus 469 l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhCCCcccceeeccCCc
Confidence 3333333566666666654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.4e-27 Score=216.24 Aligned_cols=361 Identities=20% Similarity=0.181 Sum_probs=248.6
Q ss_pred CCCccEEEeecCCCC-hhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCc
Q 012044 56 GSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 134 (472)
.+-++.+++++|.++ +..|..+..++.++-|.+..- ++.. .|..++.+.+|++|.+++|.. ..+-..+..++.||
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~-vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQ-VPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhh-ChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH
Confidence 456778888888887 556777778888888888773 4433 466777888888888888875 33456677788888
Q ss_pred EEeccCccc-ccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecC
Q 012044 135 KLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (472)
Q Consensus 135 ~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (472)
.+.++.|.. ..+.|..+-.+..|.+|+++.+. +.. .+..+...+++-.|++++|++...+...+-++..|-.|++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 888877653 33455677778888888888743 332 455566667777888888887776666667777777888888
Q ss_pred CCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccC-hhHHHHhcCCCCccEEecccCCCCHHH
Q 012044 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEG 292 (472)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (472)
|++... |+.+..+..|+.|.+++|.+...-...+..+++|++|.+++..-+ ..+|..+..+.+|..++++.|.+. ..
T Consensus 160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 777554 455677777888888887766555555556667777777765432 234555666777788888777664 34
Q ss_pred HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChH-HHHHHhCC
Q 012044 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSL 371 (472)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~ 371 (472)
|+.+..+++|+.|++++|.++... ...+.+.+|+.|.++.|+++. .|..+.+++.|++|...+|+++-. .|..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 566677778888888887776532 223455677777887777765 566667777777777777776533 25566777
Q ss_pred CCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccC
Q 012044 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRIT 427 (472)
Q Consensus 372 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~ 427 (472)
..|+.+...+|.+.- .|..+..|..|+.|.++.|++... -++.|+.|++..|+..
T Consensus 316 ~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 777777777776654 466677777777777777766543 5677777777777543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=7.8e-28 Score=207.93 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=67.9
Q ss_pred HhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----------------------------ccccCce
Q 012044 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----------------------------GLTGLVS 418 (472)
Q Consensus 368 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----------------------------~~~~L~~ 418 (472)
+..+++|..|++++|.+.+. |..++++..|+.|+++.|+|... .+.+|..
T Consensus 431 l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 45667777777777766653 55555666677777777766543 5688999
Q ss_pred eeccCCccChhHHhhccCCccccccccccccCCHHHHHHhhc
Q 012044 419 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 460 (472)
Q Consensus 419 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 460 (472)
||+.+|.+.. +|..+.+|++|++|++++|+|+...-+.+..
T Consensus 510 LDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLmk 550 (565)
T KOG0472|consen 510 LDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFRQPRHQILMK 550 (565)
T ss_pred eccCCCchhh-CChhhccccceeEEEecCCccCCCHHHHhcc
Confidence 9999998876 4667889999999999999998666554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.5e-27 Score=215.16 Aligned_cols=340 Identities=21% Similarity=0.196 Sum_probs=197.4
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
+..++.|.|....+. .+|+.++++.+|++|.+.+| ++... ...+..++.|+.+.+++|......+|..+-.+..|..
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN-~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN-QLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh-hhHhh-hhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 345666666666664 45666666666666666665 33222 2334556666666666666655555666666666666
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
|++++|. +...|..+..-+++-+|++++++ +....-..+.++..|-.|++++|.+... |..+.++.+|++|.+++|.
T Consensus 108 lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 108 LDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEML-PPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhc-CHHHHHHhhhhhhhcCCCh
Confidence 6666653 44555555666666666666633 3322333344555666666666666543 3345666666666666666
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCC-hhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHH
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLS-DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (472)
+.......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.|.+.. .|..+..+++|+.|++++|.++....
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~- 262 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNM- 262 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeec-
Confidence 65544444445555666666655432 2234455556666666666666553 45556666666666666666553221
Q ss_pred HhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCCh-hHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCC
Q 012044 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (472)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 373 (472)
..+...+|++|+++.|+++.. +..+..++.|+.|.+.+|+++- ..|..++++.+|+.+...+|.+.- .|..+..|+.
T Consensus 263 ~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~k 340 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVK 340 (1255)
T ss_pred cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHH
Confidence 222334666666666666543 4455566666666666665542 244556666666666666665543 3555666666
Q ss_pred CCEEeCCCCccChhHHHHhhcCCCCcEEEecCC
Q 012044 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (472)
Q Consensus 374 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 406 (472)
|+.|.++.|.+.. .|..+.-++.|++|++..|
T Consensus 341 L~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 341 LQKLKLDHNRLIT-LPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhcccccceee-chhhhhhcCCcceeeccCC
Confidence 6666666666555 3555666666666666665
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=6.3e-25 Score=208.96 Aligned_cols=381 Identities=21% Similarity=0.206 Sum_probs=264.2
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCC---
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN--- 132 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~--- 132 (472)
..+++.|+++++.+. .+|...+++.+|+.+.+.++ .....|..+..+.+|++|+++.|.+. ..|..+..+..
T Consensus 67 l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n--~l~~lP~~~~~lknl~~LdlS~N~f~--~~Pl~i~~lt~~~~ 141 (1081)
T KOG0618|consen 67 LSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNN--RLQSLPASISELKNLQYLDLSFNHFG--PIPLVIEVLTAEEE 141 (1081)
T ss_pred HHHHhhcccchhhHh-hCchhhhhhhcchhheeccc--hhhcCchhHHhhhcccccccchhccC--CCchhHHhhhHHHH
Confidence 357889999998875 56777788999999999985 45556778888899999999988752 22333333333
Q ss_pred ----------------CcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccc-----------------cCC
Q 012044 133 ----------------LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-----------------SGL 179 (472)
Q Consensus 133 ----------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l-----------------~~~ 179 (472)
++.+++..+......+..+..+.. .|+++++... ......+ -.-
T Consensus 142 ~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g 218 (1081)
T KOG0618|consen 142 LAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEISG 218 (1081)
T ss_pred Hhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEecC
Confidence 333333333222222222333333 3666654322 1111000 012
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEc
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (472)
++|+.|....|.++.... -..-.+|++++++.+.+... ++++..+.+|+.+....|.+. ..+..+....+|+.+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeecc--ccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 344455555554442111 12336788889988888776 488889999999999888884 44555666777888887
Q ss_pred cccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhh-------------------------CCCCCCEEecCCCccCc
Q 012044 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-------------------------GLCNLKCLELSDTQVGS 314 (472)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~ 314 (472)
..|.+.. .+....+..+|++|++..|.+.......+. ..+.|+.|.+.+|.+++
T Consensus 295 ~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 295 AYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 7777653 345566678888888888766432221111 12346677788888888
Q ss_pred hhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhc
Q 012044 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (472)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 394 (472)
..+..+.+.++|+.|++++|++.......+.+++.|++|+++||.++.. +..+..++.|++|...+|++... | .+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~~f-P-e~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLLSF-P-ELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCceeec-h-hhhh
Confidence 8888889999999999999998877778888999999999999999976 47788999999999999999875 4 6788
Q ss_pred CCCCcEEEecCCccccc-----cc-ccCceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 395 FKNLRSLEICGGGLTDA-----GL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 395 ~~~L~~L~l~~~~~~~~-----~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
++.|+++|++.|.++.. .- ++|+.||+++|.-....-..|..+..+...++.-++..+
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~d 514 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTPD 514 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCCc
Confidence 99999999999998876 22 799999999997544445566667777777776664443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.9e-24 Score=187.11 Aligned_cols=356 Identities=20% Similarity=0.187 Sum_probs=201.9
Q ss_pred ccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhC---------
Q 012044 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG--------- 129 (472)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--------- 129 (472)
++.++.+++.+. .+|+.+....+++.++++.+ .+... ++.+..+..|+.++..+|.+ ...|+.+.+
T Consensus 93 l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n-~~~el-~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 93 LKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN-ELKEL-PDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHhhcccchHh-hccHHHhhhhhhhhhhcccc-ceeec-CchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhc
Confidence 444555555553 44555555556666655554 22222 23334444444444444443 222333333
Q ss_pred --------------CCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChh
Q 012044 130 --------------LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195 (472)
Q Consensus 130 --------------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 195 (472)
++.|++|+...| .+...|+.++.+.+|+-|++..+.... . ..|.+|..|+++.+..|++...
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~--l-Pef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRF--L-PEFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccccc--C-CCCCccHHHHHHHhcccHHHhh
Confidence 445555555443 233445555555555555555533221 1 2555666666666666666555
Q ss_pred hhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHH----
Q 012044 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---- 271 (472)
Q Consensus 196 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---- 271 (472)
..+..+.++++..|++..|++... |+.+.-+++|+.|++++|.++.. +..++++ .|+.|.+.+|.+...-.+.
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred HHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 555555667777777777766553 55666667777777777776543 3456666 6777776666543210000
Q ss_pred -------h------------------------------cCCCCccEEecccCCCCHHHHHHhh--CCCCCCEEecCCCcc
Q 012044 272 -------L------------------------------KGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDTQV 312 (472)
Q Consensus 272 -------l------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 312 (472)
+ ....+.+.|++++-+++..+.+.|. .---...++++.|++
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL 400 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL 400 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH
Confidence 0 0012333444443333322222221 111244555555543
Q ss_pred Cc-----------------------hhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHh
Q 012044 313 GS-----------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (472)
Q Consensus 313 ~~-----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (472)
.. ..+..+..+++|..|++++|-+.+ .|..++.+-.|+.++++.|.+... |..+.
T Consensus 401 ~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~l-P~~~y 478 (565)
T KOG0472|consen 401 CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRML-PECLY 478 (565)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccc-hHHHh
Confidence 22 123334566777777877765544 455566666788888887766543 44444
Q ss_pred CCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccCh
Q 012044 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 370 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~ 428 (472)
.+..++.+-.++|++....++.+.++.+|..|++.+|.+..+ .|.+|+.|++++|++..
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 455666667777888887777788999999999999998877 89999999999999984
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=3.3e-20 Score=195.64 Aligned_cols=352 Identities=21% Similarity=0.184 Sum_probs=204.4
Q ss_pred CCccEEEeecCCCC--hhHHHHhhCCCCCCeeecCCcc-----ccChhhHHHhhCC-CCCCEEecCCCCCCCHHHHHHHh
Q 012044 57 SSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFA 128 (472)
Q Consensus 57 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~ 128 (472)
..++.+.+.-..+. ......+..+++|+.|.+..+. ......+..+..+ ++|+.|.+.+++. ..+|..|
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-
Confidence 34555555433332 1223456777888888775431 1111223334333 3578888877654 3445444
Q ss_pred CCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcE
Q 012044 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (472)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 208 (472)
...+|++|++.++. +...+..+..+++|+.|+++++..+... ..+..+++|+.|++.+|......+..+.++++|+.
T Consensus 609 ~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 45778888887754 4444555667778888888776544322 23666778888888776544455666777788888
Q ss_pred EEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCC
Q 012044 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (472)
Q Consensus 209 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (472)
|++.+|......+..+ ++++|+.|++++|......+. ...+|+.|+++++.+.. .|..+ .+++|++|.+.++..
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccch
Confidence 8887764333333322 567788888877754322221 23567777777776543 23222 456677777665321
Q ss_pred CH-------HHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCC
Q 012044 289 GD-------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (472)
Q Consensus 289 ~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 361 (472)
.. ..+......++|+.|++++|......+..++.+++|+.|++++|..-...|..+ .+++|++|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 10 011112234577777777776555556667777778888887764322233222 5677778887776432
Q ss_pred hHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCc-cccc-----ccccCceeeccCCc
Q 012044 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDA-----GLTGLVSLNVSNSR 425 (472)
Q Consensus 362 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~-----~~~~L~~L~l~~n~ 425 (472)
...+. ..++|+.|++++|.+.. .|..+..+++|+.|++++|. +... .+++|+.+++++|.
T Consensus 839 ~~~p~---~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 839 RTFPD---ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccc---cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 22111 23567777787777765 45567777777777777742 2222 45666666666663
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=6.9e-20 Score=193.28 Aligned_cols=339 Identities=17% Similarity=0.154 Sum_probs=238.5
Q ss_pred HHHhcCCCccEEEeecCC------CChhHHHHhhCC-CCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHH
Q 012044 51 VIASQGSSLLSVDLSGSD------VTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123 (472)
Q Consensus 51 ~~~~~~~~l~~L~l~~~~------~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 123 (472)
..+..+++++.|.+..+. +....|..+..+ ++|+.|.+.++ .+... |..| ...+|++|+++++.+ ..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~l-P~~f-~~~~L~~L~L~~s~l--~~L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCM-PSNF-RPENLVKLQMQGSKL--EKL 626 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCC-CCcC-CccCCcEEECcCccc--ccc
Confidence 345678899999987543 222345556555 46999999986 34443 3333 457899999999875 345
Q ss_pred HHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCC
Q 012044 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203 (472)
Q Consensus 124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 203 (472)
+..+..+++|++|+++++..+... +.+..+++|++|++++|..+. ..+..+..+++|+.|++++|......+..+ ++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 677788999999999987655444 357788999999999987665 356678889999999999874333334333 68
Q ss_pred CCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccCh-------hHHHHhcCCC
Q 012044 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-------ECLVHLKGLT 276 (472)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~ 276 (472)
++|++|++++|......+. ..++|+.|+++++.+...+ ..+ .+++|+.|.+.++.... ..+.....++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-ccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 8999999999865433222 2468899999998876432 222 56788888877643211 1111223457
Q ss_pred CccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcC
Q 012044 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (472)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (472)
+|+.|++++|......+..++++++|+.|++++|..-...+... .+++|+.|++++|......+. ...+|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence 89999999986555566778899999999999875332223222 678999999999854322221 23689999999
Q ss_pred CCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCc
Q 012044 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (472)
Q Consensus 357 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 407 (472)
+|.++.. +..+..+++|+.|++++|.--...+..+..+++|+.+++++|.
T Consensus 855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9998864 5678889999999999875443355566778899999998763
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1e-21 Score=169.97 Aligned_cols=279 Identities=23% Similarity=0.168 Sum_probs=190.7
Q ss_pred cCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCc
Q 012044 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (472)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 134 (472)
-.+..+.|+|..|.|+..-+++|+.+++||+|++++| +++...+..|..++.|..|-+.++..+.......|+++..|+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3578889999999999877899999999999999997 899999999999999999988875556777778999999999
Q ss_pred EEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccCh------------hhhhhccC
Q 012044 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------SGIAYLKG 202 (472)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~l~~ 202 (472)
.|.+.-|...-.....+..+++|..|.+.++. .....-..+..+..++.+.+..+.+.. ..+..++.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 99998877666666778899999999998743 333334466777778888776665221 01111222
Q ss_pred CCCCcEEEecCCCCChhHHHhhh-cCCCCcEEeccCCcC-ChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccE
Q 012044 203 LQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (472)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (472)
........+.+.++.......+. ....+.+--.+.+.. ...+...|..+++|+++++++|.+++....+|.+...++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 22222222222222111111111 111221111122222 2223345777888888888888887777777778888888
Q ss_pred EecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCC
Q 012044 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (472)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (472)
|.+..|++.......|.++..|+.|++++|+++...+.+|....+|..|.+-.|.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 8888887766666667777888888888888877777777777777777776553
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=2.9e-18 Score=157.79 Aligned_cols=65 Identities=32% Similarity=0.492 Sum_probs=27.6
Q ss_pred CCCCCCEeeecCCCCChhHH----HhhcCCCCCCEEEcCCCCCChHHHH----HHhCCCCCCEEeCCCCccCh
Q 012044 322 GLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITD 386 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~ 386 (472)
.+++|+.|++++|.+++... ..+..+++|++|++++|.+++.... .+..+++|++|++++|.+.+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 33444555554444442211 1122334555555555544433222 12334455555555555444
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=4.1e-18 Score=156.80 Aligned_cols=229 Identities=30% Similarity=0.359 Sum_probs=128.0
Q ss_pred CCCCCCEEEeeccccChh----hhhhccCCCCCcEEEecCCCCC------hhHHHhhhcCCCCcEEeccCCcCChhHHHH
Q 012044 178 GLTNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYLNLNRCQLSDDGCEK 247 (472)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 247 (472)
.+.+|+.+++.++.++.. ....+...++++++++.++.+. ...+..+..+++|+.|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 334455555555544332 1222334455555555555443 122334555666777777666665444444
Q ss_pred hhcCCC---CcEEEccccccChhH----HHHhcCC-CCccEEecccCCCCHH----HHHHhhCCCCCCEEecCCCccCch
Q 012044 248 FSKIGS---LKVLNLGFNEITDEC----LVHLKGL-TNLESLNLDSCGIGDE----GLVNLTGLCNLKCLELSDTQVGSS 315 (472)
Q Consensus 248 l~~~~~---L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 315 (472)
+..+.. |+.|++++|.+.+.. ...+..+ ++|+.|++.+|.+... ....+..+++|+.|++++|.+...
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 433333 777777776665322 2234445 6777777777776632 223345556777888877776643
Q ss_pred hH----HHhhCCCCCCEeeecCCCCChhHHH----hhcCCCCCCEEEcCCCCCChHHHHHHhC-----CCCCCEEeCCCC
Q 012044 316 GL----RHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGA 382 (472)
Q Consensus 316 ~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~ 382 (472)
.. ..+...++|++|++++|.+++.... .+..+++|++|++++|.+++.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 22 2344556888888888877654332 3446778888888888887655444422 367888888888
Q ss_pred ccChhHHH----HhhcCCCCcEEEecCC
Q 012044 383 RITDSGAA----YLRNFKNLRSLEICGG 406 (472)
Q Consensus 383 ~l~~~~~~----~l~~~~~L~~L~l~~~ 406 (472)
.+++.... .+..+++|+++++++|
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 77643322 2333344444444433
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=3.4e-19 Score=154.50 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=51.1
Q ss_pred CEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccC-CcCChhHHHHhhcCCCCcEEEccc
Q 012044 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGF 261 (472)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~ 261 (472)
.++.+..|.++..++..|+.+++|+.|+++.|.++...+++|.+++++..|-+-+ |.++......|+++..++.|.+..
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3444445555544455555555555555555555554455555555544444333 444444444455555555555444
Q ss_pred cccChhHHHHhcCCCCccEEecccCC
Q 012044 262 NEITDECLVHLKGLTNLESLNLDSCG 287 (472)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (472)
+.+.......+..++++..|.+..+.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchh
Confidence 44444334444445555555444443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1e-15 Score=150.65 Aligned_cols=241 Identities=21% Similarity=0.141 Sum_probs=127.7
Q ss_pred CCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcc
Q 012044 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (472)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (472)
+|+.|++.+|.++..+ . ..++|++|++++|.++.. +. ..++|+.|++.+|.+.... . ....|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~~Lp-~---lp~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHLP-A---LPSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchhhhh-h---chhhcCEEECc
Confidence 4555555555554321 1 135555666655555432 11 1245555665555544221 1 12345556666
Q ss_pred ccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhH
Q 012044 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (472)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 340 (472)
+|.++.. +. ..++|+.|++++|.+.... . ...+|+.|.+++|.++..+. ..++|+.|++++|.++...
T Consensus 291 ~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 291 GNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLASLP 358 (788)
T ss_pred CCccccc-cc---cccccceeECCCCccccCC-C---CcccccccccccCccccccc----cccccceEecCCCccCCCC
Confidence 6555431 11 2345666666666554321 1 11245566666665543211 1135666666666665421
Q ss_pred HHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc--ccccCce
Q 012044 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA--GLTGLVS 418 (472)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~L~~ 418 (472)
. ..++|+.|++++|.++.. +. ..++|+.|++++|.+...+ . ..++|+.|++++|.++.. ...+|+.
T Consensus 359 ~----lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~LssIP~l~~~L~~ 426 (788)
T PRK15387 359 T----LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTSLPMLPSGLLS 426 (788)
T ss_pred C----CCcccceehhhccccccC-cc---cccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCCCCcchhhhhh
Confidence 1 124566666666666542 11 1245677777777666532 1 134677777777766654 2346677
Q ss_pred eeccCCccChhHHhhccCCccccccccccccCCHHHHHHh
Q 012044 419 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 458 (472)
Q Consensus 419 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 458 (472)
|++++|++.. .|..+.+++.|+.|++++|++++.....+
T Consensus 427 L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7777777764 35566677777777777777776655544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.3e-14 Score=141.17 Aligned_cols=219 Identities=20% Similarity=0.118 Sum_probs=105.4
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEc
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (472)
++|++|++++|.++..+ . ..++|+.|++.+|.+... +. ...+|+.|++++|.+...+. ..++|+.|++
T Consensus 242 ~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccCccc-C---cccccceeeccCCchhhh-hh---chhhcCEEECcCCccccccc----cccccceeEC
Confidence 45555555555554321 1 124555555555554332 11 12345555555555543221 1245566666
Q ss_pred cccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChh
Q 012044 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (472)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (472)
++|.+... +. ...+|+.|.+.+|.+.... . ...+|+.|++++|.+...+. ..++|+.|++++|.+...
T Consensus 310 S~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 310 SDNQLASL-PA---LPSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL 377 (788)
T ss_pred CCCccccC-CC---CcccccccccccCcccccc-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccC
Confidence 65555431 11 1234555555555544211 0 11256666666665543221 124555556665555431
Q ss_pred HHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----ccc
Q 012044 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLT 414 (472)
Q Consensus 340 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~ 414 (472)
+. ...+|+.|++++|.++... . ..++|+.|++++|.+... |.. ..+|+.|++++|.++.. .++
T Consensus 378 -P~---l~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~ 445 (788)
T PRK15387 378 -PA---LPSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRLPESLIHLS 445 (788)
T ss_pred -cc---cccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCcccccChHHhhcc
Confidence 11 1235666666666555321 1 124566666666665542 221 23455566666665544 455
Q ss_pred cCceeeccCCccChhHHhhc
Q 012044 415 GLVSLNVSNSRITSAGLRHL 434 (472)
Q Consensus 415 ~L~~L~l~~n~~~~~~~~~l 434 (472)
+|+.|++++|++.+..+..+
T Consensus 446 ~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCeEECCCCCCCchHHHHH
Confidence 66666666666666555443
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.57 E-value=2.5e-14 Score=122.83 Aligned_cols=250 Identities=22% Similarity=0.276 Sum_probs=121.2
Q ss_pred hhccCCCCCcEEEecCCCCChhHHHh----hhcCCCCcEEeccCCc---CChhHH-------HHhhcCCCCcEEEccccc
Q 012044 198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQ---LSDDGC-------EKFSKIGSLKVLNLGFNE 263 (472)
Q Consensus 198 ~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~---~~~~~~-------~~l~~~~~L~~L~l~~~~ 263 (472)
..+..+..++++++++|.+......+ +.+.++|+..+++.-- .....+ .++..+|+|+++++|.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34455677777778777776544433 3445666666665421 111222 223345566666666665
Q ss_pred cChhHH----HHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChh
Q 012044 264 ITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (472)
Q Consensus 264 ~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (472)
+....+ ..+..+..|++|++.+|.++......++. .|..|. .......-+.|+.+...+|++.+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 443222 22345566666666666554333222211 000000 000012234455555555544332
Q ss_pred HHHh----hcCCCCCCEEEcCCCCCChHHH----HHHhCCCCCCEEeCCCCccChhHHH----HhhcCCCCcEEEecCCc
Q 012044 340 SLRK----LAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGG 407 (472)
Q Consensus 340 ~~~~----~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~~~ 407 (472)
.... +...+.|+++.+..|.+...+. ..+..+|+|+.|++.+|.++..... .+..+++|++|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 2222 2234555555555554443322 2344555555555555555543322 23445556666665555
Q ss_pred cccc-----------ccccCceeeccCCccChhHHh----hccCCccccccccccccC--CHHHHHHh
Q 012044 408 LTDA-----------GLTGLVSLNVSNSRITSAGLR----HLKPLKNLRSLTLESCKV--TANDIKRL 458 (472)
Q Consensus 408 ~~~~-----------~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~~~l--~~~~~~~l 458 (472)
+... ..|+|+++.+.+|.++..... .+...+.|..|++++|.+ ....+..+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei 320 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI 320 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence 5443 456666666666666543332 233466777777777776 44444444
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=127.42 Aligned_cols=300 Identities=28% Similarity=0.411 Sum_probs=132.7
Q ss_pred CCccEEEeecCC-CChhHHHHh-hCCCCCCeeecCCccccChhhHHHh-hCCCCCCEEecCCCCCCCHHHHHHHh-CCCC
Q 012044 57 SSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLIN 132 (472)
Q Consensus 57 ~~l~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~-~l~~ 132 (472)
..++.|++.++. +.+.....+ .+||++++|.+.+|..+++....++ ..|++|++|++..|..++......++ .|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 345555555442 222222333 3455555555555555555544444 34555555555555444444333232 4555
Q ss_pred CcEEeccCccccccc-c-cccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEE
Q 012044 133 LVKLDLERCTRIHGG-L-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (472)
Q Consensus 133 L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (472)
|++|+++.|+.+... . .....+..++.+..++|..........+. ..+..+.+++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-----------------------~~~~~i~~ln 274 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-----------------------AYCLEILKLN 274 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh-----------------------ccChHhhccc
Confidence 555555554433321 1 11223333444444444333322221111 2233333444
Q ss_pred ecCC-CCChhHH-HhhhcCCCCcEEeccCCc-CChhHHHHhh-cCCCCcEEEccccc-cChhHHHHh-cCCCCccEEecc
Q 012044 211 LEGC-PVTAACL-DSLSALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHL-KGLTNLESLNLD 284 (472)
Q Consensus 211 l~~~-~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~ 284 (472)
+..| .+++... ..-..+..|+.+..+++. +++....+++ +.++|+.+.+..+. +++.....+ .+++.|+.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 3333 1222111 111234555555555443 2222222332 34555565555553 333322222 355666666666
Q ss_pred cCCCCHHH-HHHh-hCCCCCCEEecCCCc-cCchhHHHhh----CCCCCCEeeecCC-CCChhHHHhhcCCCCCCEEEcC
Q 012044 285 SCGIGDEG-LVNL-TGLCNLKCLELSDTQ-VGSSGLRHLS----GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 356 (472)
Q Consensus 285 ~~~~~~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~~~~l~----~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~ 356 (472)
++...... ...+ .+++.|+++.++++. +++.....+. ....|+.+.++++ .+++.....+..+++|+.+++-
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 65432221 1112 245666666666553 2333233332 2345666666666 3344455556666777777666
Q ss_pred CCC-CChHHHHHH-hCCCCCCEEeC
Q 012044 357 ARQ-ITDTGLAAL-TSLTGLTHLDL 379 (472)
Q Consensus 357 ~~~-~~~~~~~~l-~~~~~L~~L~l 379 (472)
+++ ++......+ .++|+++...+
T Consensus 435 ~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 435 DCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred chhhhhhhhhHHHHhhCccceehhh
Confidence 653 333333333 44666655544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=5.2e-14 Score=139.58 Aligned_cols=251 Identities=17% Similarity=0.165 Sum_probs=115.8
Q ss_pred CCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEec
Q 012044 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (472)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 235 (472)
+...|++++.. ++. .+..+ .++|+.|++++|.++..+. .+ .++|++|++++|.+... +..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~-Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILG-LTT-IPACI--PEQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSI-PATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCC-cCc-CCccc--ccCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence 45566666532 221 22222 1356666666666654322 22 14666666666655432 2222 135666666
Q ss_pred cCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCch
Q 012044 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (472)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (472)
++|.+... +..+. .+|+.|++++|.+.. .+..+ +++|+.|++++|.+. ..
T Consensus 249 s~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt------------------------~L 298 (754)
T PRK15370 249 SINRITEL-PERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR------------------------TL 298 (754)
T ss_pred cCCccCcC-ChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc------------------------cC
Confidence 66655432 22221 345555555555442 22222 134555555555443 21
Q ss_pred hHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcC
Q 012044 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (472)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 395 (472)
+. .+ .++|+.|++++|.++.. +..+ .++|+.|++++|.++.. +..+ .++|+.|++++|++... |..+ .
T Consensus 299 P~-~l--p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p 366 (754)
T PRK15370 299 PA-HL--PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVL-PETL--P 366 (754)
T ss_pred cc-cc--hhhHHHHHhcCCccccC-Cccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcC-Chhh--c
Confidence 11 00 12344444544444321 1111 13455555555544432 1112 24555555555555432 2222 2
Q ss_pred CCCcEEEecCCccccc---ccccCceeeccCCccChh---HHhhccCCccccccccccccCCHHHHHHh
Q 012044 396 KNLRSLEICGGGLTDA---GLTGLVSLNVSNSRITSA---GLRHLKPLKNLRSLTLESCKVTANDIKRL 458 (472)
Q Consensus 396 ~~L~~L~l~~~~~~~~---~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 458 (472)
+.|++|++++|.++.. ....|+.|++++|++... .+..+..++.+..+++.+|+++...+..+
T Consensus 367 ~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 367 PTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 4555555555555443 123466666666666532 22223345666777777777766555543
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=4.3e-13 Score=115.38 Aligned_cols=235 Identities=20% Similarity=0.223 Sum_probs=143.0
Q ss_pred ccccCCCCCCEEEeeccccChhh----hhhccCCCCCcEEEecCC---CCChhHH-------HhhhcCCCCcEEeccCCc
Q 012044 174 KPLSGLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGC---PVTAACL-------DSLSALGSLFYLNLNRCQ 239 (472)
Q Consensus 174 ~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~---~~~~~~~-------~~l~~~~~L~~L~l~~~~ 239 (472)
..+..+..++++++++|.+.... ...+.+.+.|+..+++.- +.....+ ..+..+|+|+.++++.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34456789999999999876543 344567788888888753 2222222 345678899999999999
Q ss_pred CChhHHHHh----hcCCCCcEEEccccccChhHHHH-------------hcCCCCccEEecccCCCCHHH----HHHhhC
Q 012044 240 LSDDGCEKF----SKIGSLKVLNLGFNEITDECLVH-------------LKGLTNLESLNLDSCGIGDEG----LVNLTG 298 (472)
Q Consensus 240 ~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~----~~~~~~ 298 (472)
+....+..| .++..|+.|.+.+|.+....... .+..+.|+.+...+|.+.+.+ ...|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 876655444 56889999999999876433222 234567777777776554322 233445
Q ss_pred CCCCCEEecCCCccCchh----HHHhhCCCCCCEeeecCCCCChhHHH----hhcCCCCCCEEEcCCCCCChHHHHHH--
Q 012044 299 LCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLAAL-- 368 (472)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l-- 368 (472)
.+.|+.+.+..|.+.... ...+..||+|+.|++..|-++..... .++.+++|+++++++|.+...+..++
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 566777777666554322 23445667777777766665543332 23345666666666666655443332
Q ss_pred ---hCCCCCCEEeCCCCccChhHHHH----hhcCCCCcEEEecCCcc
Q 012044 369 ---TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGL 408 (472)
Q Consensus 369 ---~~~~~L~~L~l~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~ 408 (472)
...|+|+.|.+.+|.++...... +...+.|+.|++++|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23566666666666555433222 23344555555555554
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=5.3e-14 Score=123.66 Aligned_cols=208 Identities=28% Similarity=0.453 Sum_probs=145.5
Q ss_pred cceEecCCCCCCChHHHHHHHhcCCCccEEEeecC-CCChhHHHHh-hCCCCCCeeecCCccccChhhHHHh-hCCCCCC
Q 012044 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT 109 (472)
Q Consensus 33 ~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~ 109 (472)
++.+-+..+..+.+.-.......++++.+|.+.++ .+++.....+ ..|++|++|++.+|..+++.....+ ..|++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55556666667777777788889999999999976 5777777677 4799999999999989999888866 6899999
Q ss_pred EEecCCCCCCCHHHHHHH-hCCCCCcEEeccCccccccccc--ccccCCCCceEeecCCCCCCcccccccc-CCCCCCEE
Q 012044 110 SLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSL 185 (472)
Q Consensus 110 ~L~L~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L 185 (472)
++++++|+.+.......+ .++..++.+...+|........ .-..++.+.++++..|..+++...-.+. .+..|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 999999987665444444 5788899998888865544332 2234556666676677777765533332 56778888
Q ss_pred Eeecc-ccChhhhhhc-cCCCCCcEEEecCCC-CChhHHHhhh-cCCCCcEEeccCCcC
Q 012044 186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQL 240 (472)
Q Consensus 186 ~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~ 240 (472)
..+++ .+++.....+ .++++|+.+-+..|+ +++.....++ +++.|+.+++.++..
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 87765 4555555544 456777777777763 4443333333 456677666666543
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=1e-12 Score=130.52 Aligned_cols=264 Identities=17% Similarity=0.145 Sum_probs=171.0
Q ss_pred CCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEE
Q 012044 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (472)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (472)
.+...|+++++. +...|..+. ++|+.|++++|. +.. .+..+ .++|+.|++++|.++.. +..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~-Lts-LP~~l--~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNNE-LKS-LPENL--QGNIKTLYANSNQLTSI-PATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCCC-CCc-CChhh--ccCCCEEECCCCccccC-Chhhh--ccccEEE
Confidence 346677777653 333333332 468888888754 332 22222 24788888888877643 33332 4788888
Q ss_pred ecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCH
Q 012044 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (472)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (472)
+++|.+... +..+. .+|+.|++++|.+... +..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.+..
T Consensus 248 Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRITEL-PERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccCcC-ChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc
Confidence 888877643 33332 4788888888887643 3323 25788999988877642 2222 2468888888887764
Q ss_pred HHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhC
Q 012044 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370 (472)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 370 (472)
.. ..+ .++|+.|.+++|.++..+ ..+ +++|+.|++++|.++.. +..+ .++|++|++++|.++.. +..+.
T Consensus 319 LP-~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~L-P~~l~- 387 (754)
T PRK15370 319 LP-ETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNL-PENLP- 387 (754)
T ss_pred CC-ccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCC-CHhHH-
Confidence 32 122 257889999988876543 222 37899999999987752 3333 26899999999988764 33332
Q ss_pred CCCCCEEeCCCCccChh---HHHHhhcCCCCcEEEecCCcccccccccCceeeccCCcc
Q 012044 371 LTGLTHLDLFGARITDS---GAAYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRI 426 (472)
Q Consensus 371 ~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~ 426 (472)
+.|+.|++++|++... .+.....++.+..+++.+|.+....+.+|+.+ ++.+.+
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L-l~s~~~ 444 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL-MSSVGY 444 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh-hhcccc
Confidence 3688899999988753 23334556888899999998887777777766 444444
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=3.2e-14 Score=143.29 Aligned_cols=346 Identities=20% Similarity=0.200 Sum_probs=204.0
Q ss_pred cHHHHHHHHHHHHhccccCHHHH-HHhcCCccceEecCCCCCCChHH-----HHHHH-----------hcCCCccEEEee
Q 012044 3 PRDISQQIFNELVYSRCLTEVSL-EAFRDCALQDLCLGQYPGVNDKW-----MDVIA-----------SQGSSLLSVDLS 65 (472)
Q Consensus 3 p~e~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~~-----~~~~~-----------~~~~~l~~L~l~ 65 (472)
.++.++.|+.+++.++.++.... ..+..|+|||++.+.+.....+. ..+.. .....+++..+-
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 46889999999999999887765 46678899999887543222211 01111 012345666666
Q ss_pred cCCCChhHHHHhhCCCCCCeeecCCccc-cChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccc
Q 012044 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144 (472)
Q Consensus 66 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 144 (472)
++.+.. . ..-..++.|++|-+.++.. +.......|..++.|+.|||++|.. ...+|..++.+-+||+|+++++ .+
T Consensus 532 ~~~~~~-~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t-~I 607 (889)
T KOG4658|consen 532 NNKIEH-I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT-GI 607 (889)
T ss_pred ccchhh-c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC-Cc
Confidence 665531 1 1123677899999998642 6666677788999999999998764 4578899999999999999985 46
Q ss_pred cccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccc--cChhhhhhccCCCCCcEEEecCCCCChhHHH
Q 012044 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222 (472)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 222 (472)
...|..++++..|.+|++..+...... +.....+.+|++|.+.... .+......+.++.+|+.+.+..... ....
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e 684 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLE 684 (889)
T ss_pred cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHh
Confidence 677888999999999999876554433 4555568999999997654 2333344556666666666644332 1222
Q ss_pred hhhcCCCCc----EEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHh-----c-CCCCccEEecccCCCCHHH
Q 012044 223 SLSALGSLF----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-----K-GLTNLESLNLDSCGIGDEG 292 (472)
Q Consensus 223 ~l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~-~~~~L~~L~l~~~~~~~~~ 292 (472)
.+..++.|. .+.+.++.. ......+..+.+|+.|.+..+...+...... . .++++..+.+.+|.....
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~- 762 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD- 762 (889)
T ss_pred hhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-
Confidence 333344433 233222221 1223345667788888888776653222111 0 123344444433321111
Q ss_pred HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChh-HHHhhcCCCCCCEEEcCC
Q 012044 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDA 357 (472)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~ 357 (472)
+......++|+.|.+..+.....+.........++.+.+..+.+... .....+.++++..+.+..
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 11112346777777776655444444444444455444444444332 222333444444444433
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9e-13 Score=110.91 Aligned_cols=263 Identities=22% Similarity=0.238 Sum_probs=156.9
Q ss_pred CCcHHHHHHHHHHHHhccccCHHH-HHHhcCCccceEecCCCCCCChHHHHHHHhcCCCccEEEeecCCCChhHHHHhhC
Q 012044 1 MLPRDISQQIFNELVYSRCLTEVS-LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79 (472)
Q Consensus 1 ~~p~e~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 79 (472)
.+|+|+..+||..+..-..+.... -..|..| +......+.+++.+-++.....+.+.+
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~---------------------~~de~lW~~lDl~~r~i~p~~l~~l~~ 158 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRL---------------------ASDESLWQTLDLTGRNIHPDVLGRLLS 158 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc---------------------cccccceeeeccCCCccChhHHHHHHh
Confidence 378999999997655433322221 1123222 122334556666665554333322211
Q ss_pred CCCCCeeecCCccccChhh--HHHhhCC-CCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCC
Q 012044 80 CSNLQSLDFNFCIQISDGG--LEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156 (472)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~--~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 156 (472)
..+.++.+.. .+.+.+ ..++.-+ ..|+++||++..+.....-..+..|.+|+.|.+.+....+.....+.+-.+
T Consensus 159 -rgV~v~Rlar--~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~ 235 (419)
T KOG2120|consen 159 -RGVIVFRLAR--SFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN 235 (419)
T ss_pred -CCeEEEEcch--hhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc
Confidence 2333333332 111111 1122111 357788888777666666667777888888888876554444556677778
Q ss_pred CceEeecCCCCCCccccc-cccCCCCCCEEEeeccccChhhhhhc--cCCCCCcEEEecCCC--CChhHHH-hhhcCCCC
Q 012044 157 LESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCP--VTAACLD-SLSALGSL 230 (472)
Q Consensus 157 L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~--~~~~~~~-~l~~~~~L 230 (472)
|+.|+++.|..++..... .+.+|+.|.+|+++++.........+ .--++|+.|+++|+. +...... ....+|+|
T Consensus 236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL 315 (419)
T ss_pred ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence 888888877777654443 34577888888888776554333222 122678888888762 2222222 33578999
Q ss_pred cEEeccCCc-CChhHHHHhhcCCCCcEEEccccccCh-hHHHHhcCCCCccEEecccCC
Q 012044 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCG 287 (472)
Q Consensus 231 ~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 287 (472)
.+|+++.+. +......+|.+++.|+++.++.|.... ...-.+...|+|.+|++.++-
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999998764 555666778889999999999885332 111235778999999999873
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=6.2e-14 Score=108.08 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=116.4
Q ss_pred CCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCc
Q 012044 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (472)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (472)
.+.+++.|.++++ .++.. +..++.+.+|+.|++++|.+ ...|.++..++.|+.|++.-| .+...+..++.+|.|+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 4456777777775 45544 33466777778888887775 566777888888888888765 3556677788888888
Q ss_pred eEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCC
Q 012044 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (472)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (472)
+|++.+++.-....+..|-.+..|+.|.+..|.+.. .+..++++++|+.|.+..|.+... +..++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc
Confidence 888888666566677777788888888888888764 355678888888888888776543 567778888888888888
Q ss_pred cCChhH
Q 012044 239 QLSDDG 244 (472)
Q Consensus 239 ~~~~~~ 244 (472)
.++..+
T Consensus 184 rl~vlp 189 (264)
T KOG0617|consen 184 RLTVLP 189 (264)
T ss_pred eeeecC
Confidence 766443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.2e-12 Score=114.21 Aligned_cols=203 Identities=23% Similarity=0.255 Sum_probs=103.2
Q ss_pred cCCCCcEEEccccccChhHH-HHhcCCCCccEEecccCCCCHH--HHHHhhCCCCCCEEecCCCccCchhH-HHhhCCCC
Q 012044 250 KIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTN 325 (472)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~ 325 (472)
++.+|+.+.+.++.+..... .....|+++++|++++|-+... .......+|+|+.|+++.|.+..... ..-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34555555555554433211 2344556666666666543321 12223455666666666654322110 00113456
Q ss_pred CCEeeecCCCCChhHHHhh-cCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHH-HHhhcCCCCcEEEe
Q 012044 326 LESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEI 403 (472)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l 403 (472)
|+.|.++.|+++......+ ..+|+|+.|++.+|..-.........+..|+.|++++|++.+... .....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666666666664333322 356666666666663111111112234456666666665554321 22355666666666
Q ss_pred cCCccccc------------ccccCceeeccCCccChh-HHhhccCCccccccccccccCCH
Q 012044 404 CGGGLTDA------------GLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 404 ~~~~~~~~------------~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
+.++++.. .+++|+.|+++.|++.+- ....+..+++|+.+.+..|+++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 66666554 456677777777766441 12234445666666666666554
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.5e-12 Score=106.27 Aligned_cols=182 Identities=24% Similarity=0.275 Sum_probs=83.0
Q ss_pred CccEEEeecCCCChhHHH-HhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHH-HHHhCCCCCcE
Q 012044 58 SLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVK 135 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~l~~L~~ 135 (472)
.++.++|+...++..... .++.|.+|+.|++.|. .+.+.....+++-.+|+.|+|+.|.-++.... -.+.+|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 455555555544433332 2245555555555553 44444444445555555555555443333222 22345555555
Q ss_pred EeccCccccccccccc--ccCCCCceEeecCCCC-CCccccccc-cCCCCCCEEEeecc-ccChhhhhhccCCCCCcEEE
Q 012044 136 LDLERCTRIHGGLVNL--KGLMKLESLNIKWCNC-ITDSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLN 210 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~-~~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 210 (472)
|+++-|.........+ .--++|..|+++++.. +.+.....+ ..+|+|.+|+++.+ .++......|-.++.|++|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 5555554333322111 1123455555554322 111122222 25556666666544 34444444555556666666
Q ss_pred ecCCCCC-hhHHHhhhcCCCCcEEeccCCcC
Q 012044 211 LEGCPVT-AACLDSLSALGSLFYLNLNRCQL 240 (472)
Q Consensus 211 l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~ 240 (472)
++.|... ....-.+...|.|.+|++.|+--
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 6655321 11122334556666666665543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-12 Score=115.84 Aligned_cols=228 Identities=21% Similarity=0.184 Sum_probs=128.5
Q ss_pred EEEeecCCCChhHHHHh----hCCCCCCeeecCCccccChhhH-HHhhCCCCCCEEecCCCCCCCHHHHHHH-hCCCCCc
Q 012044 61 SVDLSGSDVTDSGLIHL----KDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134 (472)
Q Consensus 61 ~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~l~~L~ 134 (472)
.+.+++-.++...+..+ +++.+||.+.+.++ .+...+. .....|++++.|||+.|-+........+ ..+|+|+
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLE 175 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccch
Confidence 44455555554444444 25677777777775 4444433 3446777788888877755444444444 3678888
Q ss_pred EEeccCccccccccc-ccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecC
Q 012044 135 KLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (472)
Q Consensus 135 ~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (472)
.|+++.|........ .-..+++|+.|.++.|..........+..+|+|+.|.+.+|..-........-+..|+.|++++
T Consensus 176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 888877653333221 1235677777777777655444444445677777777777742111122223456677777777
Q ss_pred CCCChhH-HHhhhcCCCCcEEeccCCcCChhHH------HHhhcCCCCcEEEccccccChh-HHHHhcCCCCccEEeccc
Q 012044 214 CPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGC------EKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 214 ~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~------~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~ 285 (472)
|.+.... ......++.|+.|+++.+.+..... .....+++|++|++..|.+.++ ....+...++|+.|.+..
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 7654432 2345567777777777766543321 1123456666666666665432 122344455566666555
Q ss_pred CCCC
Q 012044 286 CGIG 289 (472)
Q Consensus 286 ~~~~ 289 (472)
+.+.
T Consensus 336 n~ln 339 (505)
T KOG3207|consen 336 NYLN 339 (505)
T ss_pred cccc
Confidence 5443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1e-10 Score=94.50 Aligned_cols=119 Identities=28% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCCCEeeecCCCCChhHHHhhc-CCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEE
Q 012044 324 TNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (472)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 402 (472)
..+++|++.++.++.. ..++ .+.+|+.|++++|.++.. ..+..+++|++|++++|.++.........+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3455566666555432 2233 345566666666666542 3345556666666666666654332223466666666
Q ss_pred ecCCccccc-------ccccCceeeccCCccChh---HHhhccCCccccccccc
Q 012044 403 ICGGGLTDA-------GLTGLVSLNVSNSRITSA---GLRHLKPLKNLRSLTLE 446 (472)
Q Consensus 403 l~~~~~~~~-------~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~ 446 (472)
+++|.+.+. .+++|+.|++.+|++... -...+..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 666666554 566777777777766542 22235678888888754
No 32
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.08 E-value=1.1e-09 Score=91.39 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCCCCCEeeecCCCCChhHHHhh----cCCCCCCEEEcCCCCCChHHHHH-----HhCCCCCCEEeCCCCccChhHHHH-
Q 012044 322 GLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAA-----LTSLTGLTHLDLFGARITDSGAAY- 391 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~~~~~- 391 (472)
.-|.|+.+....|++.......+ ..-.+|+++.+..|.|...+... +..+.+|+.|++.+|.++..+...
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34566666666665433222221 12246666666666665443332 245566777777777666544332
Q ss_pred ---hhcCCCCcEEEecCCccccc------------ccccCceeeccCCccChhHHh-----hc--cCCcccccccccccc
Q 012044 392 ---LRNFKNLRSLEICGGGLTDA------------GLTGLVSLNVSNSRITSAGLR-----HL--KPLKNLRSLTLESCK 449 (472)
Q Consensus 392 ---l~~~~~L~~L~l~~~~~~~~------------~~~~L~~L~l~~n~~~~~~~~-----~l--~~~~~L~~L~l~~~~ 449 (472)
+..++.|+.|.+..|-++.. ..++|..|...+|...+..+. .+ ..+|-|..+.+.+|.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 24455667777666655443 457777777777765442221 12 247788888888888
Q ss_pred CCHHH
Q 012044 450 VTAND 454 (472)
Q Consensus 450 l~~~~ 454 (472)
+.+..
T Consensus 315 ~~E~~ 319 (388)
T COG5238 315 IKELA 319 (388)
T ss_pred chhHH
Confidence 87655
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-12 Score=101.14 Aligned_cols=156 Identities=20% Similarity=0.154 Sum_probs=126.4
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
.++++.|.++.+.++ .+|..++.+.+|++|++.++ ++.+. |..++.+++|+.|++.-|.. ...|..|+.+|-|+.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie~l-p~~issl~klr~lnvgmnrl--~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIEEL-PTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhhhc-Chhhhhchhhhheecchhhh--hcCccccCCCchhhh
Confidence 468899999999987 56778999999999999997 55554 66788999999999998875 567899999999999
Q ss_pred EeccCccccc-ccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCC
Q 012044 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (472)
Q Consensus 136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (472)
|++..|.... ..+..+-.+..|+.|.++++. .. ..+..++++++|+.|.+..|.+-. .+..++.++.|+.|.+.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC-cc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccc
Confidence 9998765332 234566678889999998743 33 467788999999999999887653 4667888999999999999
Q ss_pred CCChh
Q 012044 215 PVTAA 219 (472)
Q Consensus 215 ~~~~~ 219 (472)
+++..
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 88765
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=8.1e-11 Score=95.08 Aligned_cols=122 Identities=29% Similarity=0.395 Sum_probs=51.8
Q ss_pred cCCCCCCEEEcCCCCCChHHHHHHh-CCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCc
Q 012044 345 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLV 417 (472)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~ 417 (472)
.++.++++|++.+|.++.. +.++ .+.+|+.|++++|.+.... .+..++.|++|++++|.++.. .+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3556789999999999874 4455 5789999999999998743 467799999999999999876 479999
Q ss_pred eeeccCCccChh-HHhhccCCccccccccccccCCHHH-HHHhhccCCCCceecC
Q 012044 418 SLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSFR 470 (472)
Q Consensus 418 ~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~~l~~l~ 470 (472)
.|++++|++.+. ....++.+++|+.|++.+||++... ........+|+|+.|+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 999999998763 2356788999999999999987544 4555556789998875
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=6.8e-10 Score=94.00 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=86.1
Q ss_pred CCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEE
Q 012044 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (472)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 402 (472)
+..|+.+++++|.++... ..+.-.|.++.|+++.|.+... ..++.+++|+.|++++|.++.. ..+=..+-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhhh-hhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence 355777788877665422 2334457788888888877763 3366777888888888877653 33334566777888
Q ss_pred ecCCccccc----ccccCceeeccCCccChh-HHhhccCCccccccccccccCCH
Q 012044 403 ICGGGLTDA----GLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 403 l~~~~~~~~----~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
+++|.+... .+=+|+.||+++|++... ....+.++|.|.++.+.+||+..
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888777665 456777888888887653 33456788888888888888653
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.87 E-value=3.5e-08 Score=82.65 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=82.3
Q ss_pred hhCCCCCCEeeecCCCCChhHHH----hhcCCCCCCEEEcCCCCCChHHHH----H---------HhCCCCCCEEeCCCC
Q 012044 320 LSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLA----A---------LTSLTGLTHLDLFGA 382 (472)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~---------l~~~~~L~~L~l~~~ 382 (472)
+..||.|+..+++.|.+....+. .+++-..|.+|.+.+|.+....-. + ...-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34555555555555544332222 233444556666655544321111 1 123466777777776
Q ss_pred ccChhHH----HHhhcCCCCcEEEecCCccccc-----------ccccCceeeccCCccChhHHhh----ccCCcccccc
Q 012044 383 RITDSGA----AYLRNFKNLRSLEICGGGLTDA-----------GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSL 443 (472)
Q Consensus 383 ~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~-----------~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L 443 (472)
++...+. ..+.+-..|+++.+..|.|... ++.+|++|++.+|.++..+... +..++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6554322 1233335677777777776654 5677777777777776544433 3456667777
Q ss_pred ccccccCCHHHH----HHhhccCCCCceecC
Q 012044 444 TLESCKVTANDI----KRLQSRDLPNLVSFR 470 (472)
Q Consensus 444 ~l~~~~l~~~~~----~~l~~~~~~~l~~l~ 470 (472)
.+.+|-++..+. ..+...-+|+|-.|+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~ 278 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP 278 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccc
Confidence 777777666554 334444456555544
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=8.7e-10 Score=111.70 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=48.9
Q ss_pred CCCCEEecCCCCC-CCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCE
Q 012044 106 SNLTSLSFRRNNA-ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (472)
Q Consensus 106 ~~L~~L~L~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (472)
+.|++|-+.++.. ......+.|..++.|++|++++|......|..++.+-+||.|+++++.. . ..|..+.++..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-S-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-c-ccchHHHHHHhhhe
Confidence 3455555555431 1122223344555555555555555555555555555555555554321 1 23444455555555
Q ss_pred EEeeccccChhhhhhccCCCCCcEEEecC
Q 012044 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (472)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (472)
|++..+......+.....+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 55544432222233333455555555443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=3.6e-09 Score=89.74 Aligned_cols=130 Identities=26% Similarity=0.320 Sum_probs=85.0
Q ss_pred CCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEE
Q 012044 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (472)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (472)
..+.|+++++++|.++.. .+++.-.|+++.|+++.|.+.... .++.+++|+.|++++|.++.. ..+-..+-++++|
T Consensus 282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence 335677777777766543 345556677777777777765443 366677778888887766532 2223345677788
Q ss_pred ecccCCCCHHHHHHhhCCCCCCEEecCCCccCch-hHHHhhCCCCCCEeeecCCCCC
Q 012044 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGIS 337 (472)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 337 (472)
.+.+|.+ +....+.++-+|..|++.+|++... ....++.+|.|+.+.+.+|.+.
T Consensus 358 ~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8877765 2334556667778888888876542 3455677888888888887554
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=3.3e-08 Score=83.92 Aligned_cols=229 Identities=17% Similarity=0.143 Sum_probs=130.0
Q ss_pred CCCCCCeeecCCccccChhhHHHh-hCCCCCCEEecCCCCCCCHHHHH-HHhCCCCCcEEeccCccccccccccc-ccCC
Q 012044 79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGLVNL-KGLM 155 (472)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~ 155 (472)
....++.+.+.+|.--+......| ..+.+++++||.+|.+....-.. .+.++|.|++|+++.|+.... ...+ ....
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCccccc
Confidence 334555667777632233344555 46778888888888776554443 346888999999988764332 2222 3556
Q ss_pred CCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhh--hhc-cCCCCCcEEEecCCCCCh--hHHHhhhcCCCC
Q 012044 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSL 230 (472)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L 230 (472)
+|++|.+.+........-..+..+|.+++|.++.|.+..... ... ..-+.++++....|.... .....-.-+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 888888887554444444455667778888777763322110 111 122456666666664321 111112245777
Q ss_pred cEEeccCCcCChhH-HHHhhcCCCCcEEEccccccChh-HHHHhcCCCCccEEecccCCCCHHHHH------HhhCCCCC
Q 012044 231 FYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLV------NLTGLCNL 302 (472)
Q Consensus 231 ~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L 302 (472)
..+-+..|.+.... ...+..+|.+..|+++.+.+..+ ...++..++.|..|.+..+.+.+..-. .++.++++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 77777766654332 22344566666777777666543 344567777788887777765432110 12445555
Q ss_pred CEEecC
Q 012044 303 KCLELS 308 (472)
Q Consensus 303 ~~L~l~ 308 (472)
+.|+-+
T Consensus 282 ~vLNGs 287 (418)
T KOG2982|consen 282 QVLNGS 287 (418)
T ss_pred EEecCc
Confidence 555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=1.3e-08 Score=67.46 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=37.6
Q ss_pred CCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCc
Q 012044 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (472)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 407 (472)
|+|++|++++|.++......|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666665544555666666666666666666656666666666666666654
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3.6e-07 Score=90.92 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=82.0
Q ss_pred CccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEe
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 137 (472)
.++.|+|+++.+.+..|..++.+++|+.|++++| .+....+..+..+++|+.|+|++|.+ ...+|..++++++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCCEEE
Confidence 4788889988888888888889999999999987 67767777788888999999998874 456788888888899998
Q ss_pred ccCccccccccccccc-CCCCceEeecCCC
Q 012044 138 LERCTRIHGGLVNLKG-LMKLESLNIKWCN 166 (472)
Q Consensus 138 l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~ 166 (472)
+++|......+..+.. ..++..+++.++.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 8887655455544443 2355566666544
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=7.2e-09 Score=98.24 Aligned_cols=125 Identities=26% Similarity=0.274 Sum_probs=87.9
Q ss_pred CCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecC
Q 012044 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (472)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 405 (472)
|...+.+.|.+.. .-..+.-++.++.|+++.|++++. ..+..++.|++||++.|.+...+--....|. |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4444555555443 223344457888888988888874 4778888999999988887765333334455 88999999
Q ss_pred Cccccc----ccccCceeeccCCccChhHH-hhccCCccccccccccccCCHHH
Q 012044 406 GGLTDA----GLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAND 454 (472)
Q Consensus 406 ~~~~~~----~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~ 454 (472)
|.++.. ++.+|+-||+++|-+.+... +-+..+..|+.|++.+||+--..
T Consensus 242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 887766 78889999999997765322 23456788999999999865433
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=3.3e-07 Score=90.89 Aligned_cols=59 Identities=27% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCeeecCCccccChhhHHHh-hCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccC
Q 012044 82 NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (472)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (472)
+|++|+++|...+....+..+ ..+|.|+.|.+++-....+.....+.++|+|+.||+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC
Confidence 444444444333333333333 13344444444443333333333333444444444444
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.1e-07 Score=63.02 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=16.4
Q ss_pred ccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCC
Q 012044 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (472)
Q Consensus 174 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (472)
..+..+++|+.|++++|.+....+..|.++++|++|++++|
T Consensus 19 ~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 19 DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 33334444444444444443333333344444444444333
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=5.5e-07 Score=89.57 Aligned_cols=85 Identities=26% Similarity=0.334 Sum_probs=48.5
Q ss_pred CCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecC
Q 012044 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (472)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 405 (472)
++.|+++++.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555666666666555544444555556666666666665555555555566666666665
Q ss_pred Ccccc
Q 012044 406 GGLTD 410 (472)
Q Consensus 406 ~~~~~ 410 (472)
|.+..
T Consensus 500 N~l~g 504 (623)
T PLN03150 500 NSLSG 504 (623)
T ss_pred Ccccc
Confidence 55543
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=3.8e-07 Score=86.51 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=133.7
Q ss_pred EEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCC-CCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
.+++..+.+... ...+...+.++.|++.++ .++... ....... +|++|+++++.+ ..++..++.+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n-~i~~i~-~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNN-NITDIP-PLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCc-ccccCc-cccccchhhcccccccccch--hhhhhhhhccccccccccC
Confidence 466666655222 234456678888888886 555543 2334443 899999998875 4455677888999999998
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChh
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 219 (472)
+|. +...+......++|+.|+++++. +.. .+..+....+|+++.+.+|.... .+..+.++.++..+.+.++.+...
T Consensus 172 ~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~-l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 172 FND-LSDLPKLLSNLSNLNNLDLSGNK-ISD-LPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred Cch-hhhhhhhhhhhhhhhheeccCCc-ccc-CchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec
Confidence 875 44444444477889999998844 332 22323445568888888884322 244567777888888777766542
Q ss_pred HHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHH
Q 012044 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270 (472)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 270 (472)
+..+..+++++.|++++|.+..... ++...+++.++++++.+....+.
T Consensus 248 -~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 -PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 3566778889999999998876554 77888999999998877654443
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.37 E-value=4.6e-07 Score=88.66 Aligned_cols=237 Identities=30% Similarity=0.322 Sum_probs=116.3
Q ss_pred hCCCCCCEEecCCCCCCCHHH-HHHHhCCCCCcEEeccCc-ccccccc----cccccCCCCceEeecCCCCCCccccccc
Q 012044 103 RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-TRIHGGL----VNLKGLMKLESLNIKWCNCITDSDMKPL 176 (472)
Q Consensus 103 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~l 176 (472)
..++.|+.+.+.++..+.... ......+++|++|+++++ ....... .....+++|+.|+++++...++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 345666666666665444322 233445666666666652 2111111 2234456777777777665555555555
Q ss_pred c-CCCCCCEEEeeccc-cChhhhhhc-cCCCCCcEEEecCCCCC-hh-HHHhhhcCCCCcEEeccCCcCChhHHHHhhcC
Q 012044 177 S-GLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGCPVT-AA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (472)
Q Consensus 177 ~-~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~-~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 251 (472)
+ .+++|+.|.+..+. +++.....+ ..++.|++|++++|... +. ......++++++.+.+..... +
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence 4 36777777766564 565554444 55677777777776442 21 222234566666655433221 2
Q ss_pred CCCcEEEcccccc---ChhHHHHhcCCCCccEEecccCCCCHHH-HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCC
Q 012044 252 GSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (472)
Q Consensus 252 ~~L~~L~l~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (472)
+.++.+.+.+... ..........+++++++.+..+...... ...+..++.|. ..+. .....+..++
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l~ 404 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSLR 404 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCccc
Confidence 2222222222211 1122223566777777777766533333 23334444441 1111 1111222366
Q ss_pred EeeecCCCC-ChhHHHhhcC-CCCCCEEEcCCCC
Q 012044 328 SINLSFTGI-SDGSLRKLAG-LSSLKSLNLDARQ 359 (472)
Q Consensus 328 ~L~l~~~~~-~~~~~~~~~~-~~~L~~L~l~~~~ 359 (472)
.|.+..+.. +......... +.++..+.+.++.
T Consensus 405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred eEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 677766632 2222222222 5566666666653
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.33 E-value=6.6e-07 Score=88.78 Aligned_cols=151 Identities=21% Similarity=0.237 Sum_probs=97.9
Q ss_pred CCCccEEEeecCC-CChhHHHHhh-CCCCCCeeecCCccccChhhHHH-hhCCCCCCEEecCCCCCCCHHHHHHHhCCCC
Q 012044 56 GSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (472)
Q Consensus 56 ~~~l~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 132 (472)
..++++|++++.. +...++..++ -+|+|++|.+.+- .+....... ..++|+|..||+|++.+.. ...++++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC---cHHHhcccc
Confidence 4788888888654 4555666675 5788888888884 444433333 3688888888888887532 256778888
Q ss_pred CcEEeccCccccc-ccccccccCCCCceEeecCCCCCCccc-----cccccCCCCCCEEEeeccccChhhhhhc-cCCCC
Q 012044 133 LVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD-----MKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQK 205 (472)
Q Consensus 133 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 205 (472)
|++|.+.+-.... .....+-.+++|++||++......... .+.-..+|.|+.||.+++.++....+.+ ..-++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 8888887744333 233456778888888888744433321 1111247888899988888777655544 33345
Q ss_pred CcEEE
Q 012044 206 LTLLN 210 (472)
Q Consensus 206 L~~L~ 210 (472)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 55443
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.30 E-value=1.1e-08 Score=94.36 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=102.5
Q ss_pred CcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecC
Q 012044 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (472)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (472)
-...+++.|.+.. .+..+..+..|+.+.+..|.+.. .+..+.++..|..++++.|.++..+ ..+..+| |+.|.+++
T Consensus 77 t~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhcccccccc-CchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEEEec
Confidence 3455666666653 34445555566666666554442 2345566667777777777766543 3334444 77777777
Q ss_pred CCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccccc
Q 012044 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGL 413 (472)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 413 (472)
|+++. .+..++..+.|..|+.+.|.+... +..++++.+|+.|.+..|.+....++ +. .-.|..|+++
T Consensus 153 Nkl~~-lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfS--------- 219 (722)
T KOG0532|consen 153 NKLTS-LPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFS--------- 219 (722)
T ss_pred Ccccc-CCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHH-Hh-CCceeeeecc---------
Confidence 77665 444555667777777777776654 44566677777777777766664333 33 2234444444
Q ss_pred ccCceeeccCCccChhHHhhccCCccccccccccccCCHHHHHHh
Q 012044 414 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 458 (472)
Q Consensus 414 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 458 (472)
.|++.. .|-.|.+++.|++|-+.+|++.....+..
T Consensus 220 ---------cNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 220 ---------CNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred ---------cCceee-cchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 444443 24445555555555555555555444433
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=8.9e-07 Score=83.98 Aligned_cols=133 Identities=34% Similarity=0.458 Sum_probs=55.0
Q ss_pred hcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCE
Q 012044 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (472)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 328 (472)
..++.|+.|++++|.+.+. +...+..+.|+.|+++++.+..... .......|+.+.+.+|.... .+..+....++..
T Consensus 160 ~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~ 236 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSG 236 (394)
T ss_pred hccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCccee-cchhhhhcccccc
Confidence 3444444444444444321 1111234444444444444432211 11122234444444442111 1222333444444
Q ss_pred eeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChh
Q 012044 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 387 (472)
+.+.++.+... +..++.+++++.|++++|.+++... ++...+++.|+++++.+...
T Consensus 237 l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 237 LELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 44444433321 2333444555555555555554322 44555555555555554443
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.28 E-value=1.3e-06 Score=85.39 Aligned_cols=133 Identities=32% Similarity=0.354 Sum_probs=68.6
Q ss_pred cCCCCceEeecCCCCCCcccc-ccccCCCCCCEEEeecc--ccChh---hhhhccCCCCCcEEEecCCC-CChhHHHhhh
Q 012044 153 GLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCS--KVTDS---GIAYLKGLQKLTLLNLEGCP-VTAACLDSLS 225 (472)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~--~~~~~---~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~ 225 (472)
.++.|+.+.+.+|....+... .....++.|+.|++.++ ..... .......+++|+.+++.++. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666555554332 23345666666666542 11111 11122445666777776665 4444444444
Q ss_pred -cCCCCcEEeccCCc-CChhHHHHh-hcCCCCcEEEccccccC-hh-HHHHhcCCCCccEEeccc
Q 012044 226 -ALGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNLGFNEIT-DE-CLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 226 -~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~-~~-~~~~l~~~~~L~~L~l~~ 285 (472)
.+++|+.|.+.+|. +++.....+ ..++.|+.|+++++... +. ......++++++.+.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 36777777766665 444443333 34666777777766442 21 222234566666655443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=5.4e-07 Score=76.70 Aligned_cols=105 Identities=26% Similarity=0.257 Sum_probs=52.8
Q ss_pred CceEeecCCCCCCcccccccc-CCCCCCEEEeeccccCh--hhhhhccCCCCCcEEEecCCCCChhHHHhh-hcCCCCcE
Q 012044 157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFY 232 (472)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~ 232 (472)
++.+.+.+|..-+......++ .++.++++++.+|.+++ .....+..+|.|+.|+++.|.+...+ ..+ ....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEE
Confidence 334444444333322333332 55667777777776654 22233466677777777666654432 122 24456666
Q ss_pred EeccCCcCChhHH-HHhhcCCCCcEEEcccc
Q 012044 233 LNLNRCQLSDDGC-EKFSKIGSLKVLNLGFN 262 (472)
Q Consensus 233 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 262 (472)
|-+.|..+.-... ..+..+|.++.+.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 6666655432222 22344555555555554
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=1.5e-07 Score=89.37 Aligned_cols=212 Identities=31% Similarity=0.391 Sum_probs=128.5
Q ss_pred cCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHH-hcCCCCccEEecccCCCCHHHHHHhhCCCCCCE
Q 012044 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (472)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (472)
.+..++.+.+..+.+.. ....+..+.+|..+++..+.+... .. +..+++|++|++++|.++.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc--ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 44555555566655543 122356677788888887776542 22 56677888888888877543 23455566788
Q ss_pred EecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHH-HhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc
Q 012044 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 305 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (472)
|++.+|.+.. ...+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 8888887655 2334446777777777777765443 2 355677777777777665432 12222333334556655
Q ss_pred cChhHHHHhhcCC--CCcEEEecCCccccc-----ccccCceeeccCCccChhHHhhccCCccccccccccccCC
Q 012044 384 ITDSGAAYLRNFK--NLRSLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 384 l~~~~~~~l~~~~--~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 451 (472)
+....+ +.... +|+.++++++++... .+..+..+++.+|.+... ..+...+.+..+....+++.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 543211 11122 377888888877654 577788888888877652 33445666777777777655
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=6.2e-08 Score=91.94 Aligned_cols=241 Identities=31% Similarity=0.335 Sum_probs=168.6
Q ss_pred cCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccE
Q 012044 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (472)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (472)
..+..++.+++..+.+... ...+..+.+|+.+++.+|.+..... .+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhh
Confidence 3456666666766666541 2346778999999999998875432 166789999999999988763 33566677999
Q ss_pred EecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhH-HHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCC
Q 012044 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (472)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (472)
|++.+|.+.. ...+..+..|+.+++++|.+..... . ...+..++.+.+.++.+..... +..+..+..+++..|.
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence 9999998854 3345567899999999998876544 2 5778899999999987764322 2222334444677776
Q ss_pred CChHHHHHHhCCCC--CCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc----ccccCceeeccCCccChh---H
Q 012044 360 ITDTGLAALTSLTG--LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GLTGLVSLNVSNSRITSA---G 430 (472)
Q Consensus 360 ~~~~~~~~l~~~~~--L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~L~~L~l~~n~~~~~---~ 430 (472)
++.. ..+...+. |+.+++.+|.+... +..+..+..+..+++.++.+... ....+..+....+.+... .
T Consensus 220 i~~~--~~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 220 ISKL--EGLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred ceec--cCcccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhh
Confidence 6653 22222333 88999999988763 24566788999999999888776 556677777777776532 1
Q ss_pred Hhh-ccCCccccccccccccCCHH
Q 012044 431 LRH-LKPLKNLRSLTLESCKVTAN 453 (472)
Q Consensus 431 ~~~-l~~~~~L~~L~l~~~~l~~~ 453 (472)
... ....+.+..+++..+++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccccCccccc
Confidence 112 45678889999998886653
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.18 E-value=5.2e-08 Score=90.01 Aligned_cols=191 Identities=18% Similarity=0.095 Sum_probs=106.1
Q ss_pred cEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
+..+++.|.+. ++|..+..|..|+.+.+..|. + -..+..+.++..|++|+|+.|.. ...|..+..++ |+.|-++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~-~-r~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNC-I-RTIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhcc-c-eecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEEe
Confidence 34555655554 455666666666666666542 2 22344555666667777776654 34455555454 5666666
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChh
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 219 (472)
+| ++...+..++..+.|..|+.+.|...+ .+..+..+.+|+.|.+..|.+.+... .+. .-.|.+|+++.|++...
T Consensus 152 NN-kl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 152 NN-KLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKISYL 226 (722)
T ss_pred cC-ccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCceeec
Confidence 64 344555566666666666666644332 44555566666666666666554332 333 23366666666666553
Q ss_pred HHHhhhcCCCCcEEeccCCcCChhHHHH--hhcCCCCcEEEcccc
Q 012044 220 CLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGSLKVLNLGFN 262 (472)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~ 262 (472)
+-.|..++.|++|.+.+|.+..-+... -+...-.++|+...+
T Consensus 227 -Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 -PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 455666677777777776665433221 123334455555544
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.8e-07 Score=89.00 Aligned_cols=184 Identities=23% Similarity=0.266 Sum_probs=106.3
Q ss_pred HHHHhcCCCccEEEeecCCCChhH-HHHhhCCCCCCeeecCCccccChhhHHHhhC------------------------
Q 012044 50 DVIASQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRG------------------------ 104 (472)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------------------ 104 (472)
+.+....++.+.|.+-..+-.+-. |..|.-|..||+|.+.+|+--+..+...++.
T Consensus 77 q~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd 156 (1096)
T KOG1859|consen 77 QRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGD 156 (1096)
T ss_pred HHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccc
Confidence 334444566666666644332222 5566778888888888884333333322211
Q ss_pred ------CCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccC
Q 012044 105 ------LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178 (472)
Q Consensus 105 ------~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 178 (472)
...|...+.+.|.. .....++.-++.|+.|++++|.... ...+..|++|++||+++| .+.......+.+
T Consensus 157 ~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYN-CLRHVPQLSMVG 231 (1096)
T ss_pred cccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccc-hhccccccchhh
Confidence 01244444444443 2333455566778888888865332 236777888888888873 344333333344
Q ss_pred CCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhH-HHhhhcCCCCcEEeccCCcCC
Q 012044 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLS 241 (472)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 241 (472)
|. |+.|.+++|.++. ...+.++.+|+.|++++|-+.+.. ...++.+..|+.|.+.||.+.
T Consensus 232 c~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 54 8888888777654 344667777888888777544321 223455667777777777653
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=3.4e-05 Score=62.22 Aligned_cols=97 Identities=25% Similarity=0.317 Sum_probs=51.4
Q ss_pred CCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHH-HHhhcCCCCcEEEe
Q 012044 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEI 403 (472)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l 403 (472)
+...+++++|.+.. ...+..+++|.+|.+.+|.|+...+..-..+|+|..|.+.+|.+..... ..+..||+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555554432 2334455666666666666665444333345666666666665554321 23455666666666
Q ss_pred cCCccccc---------ccccCceeeccC
Q 012044 404 CGGGLTDA---------GLTGLVSLNVSN 423 (472)
Q Consensus 404 ~~~~~~~~---------~~~~L~~L~l~~ 423 (472)
-+|.++.. .+|+|+.||...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 55555544 345555555443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=6.1e-05 Score=45.45 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=29.6
Q ss_pred ccCceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 414 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 414 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
++|++|++++|++.+.. ..+.++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCC
Confidence 46888899999998753 358899999999999999873
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=0.00015 Score=43.74 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=18.2
Q ss_pred CCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 373 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
+|++|++++|+++...+ .+..+++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 45555555555554322 3555555555555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=9.9e-05 Score=59.65 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=35.3
Q ss_pred CccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEe
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 137 (472)
+...++|++|.+.. ...+..++.|..|.+++| .++...+.--..+++|..|.|.+|.+-.-....-++.||.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44455555554421 123344455555555554 444444443334444555555554432222222333444444444
Q ss_pred ccCc
Q 012044 138 LERC 141 (472)
Q Consensus 138 l~~~ 141 (472)
+-+|
T Consensus 120 ll~N 123 (233)
T KOG1644|consen 120 LLGN 123 (233)
T ss_pred ecCC
Confidence 4443
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=2e-05 Score=59.33 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCEeeecCCCCCh--hHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEe
Q 012044 326 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (472)
Q Consensus 326 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 403 (472)
+..++++.|.+-. ..+..+.....|...++++|.+.+....--...|-+++|++.+|.+++. |..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhccc
Confidence 3445555554321 1222333445556666666666554332224445666666666666664 333666666666666
Q ss_pred cCCccccc-----ccccCceeeccCCcc
Q 012044 404 CGGGLTDA-----GLTGLVSLNVSNSRI 426 (472)
Q Consensus 404 ~~~~~~~~-----~~~~L~~L~l~~n~~ 426 (472)
+.|.+... .+.++-.|+..+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 66655444 333444444444433
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00017 Score=56.30 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=32.6
Q ss_pred HhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCC
Q 012044 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155 (472)
Q Consensus 76 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 155 (472)
.+..|++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+++.+.+ .........+..++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence 344555666666553 344444455555555666665543 2222334455555555555543 11112223344455
Q ss_pred CCceEeec
Q 012044 156 KLESLNIK 163 (472)
Q Consensus 156 ~L~~L~l~ 163 (472)
+|+.+.+.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 55555553
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=3e-05 Score=65.70 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-------ccccCcee
Q 012044 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-------GLTGLVSL 419 (472)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-------~~~~L~~L 419 (472)
+.+.++|+..||.+++. .....+|.|+.|.++-|.++.. ..+..|++|++|.|..|.|.+. ++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34667777777777774 3445678888888888877764 3456778888888877777766 67888888
Q ss_pred eccCCccChhHHh-----hccCCccccccccccccCCHHHHH-HhhccCCCC
Q 012044 420 NVSNSRITSAGLR-----HLKPLKNLRSLTLESCKVTANDIK-RLQSRDLPN 465 (472)
Q Consensus 420 ~l~~n~~~~~~~~-----~l~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~~~ 465 (472)
+|..|+-.+.... .+.-+|+|++|| +-++++..+. ++...+.|.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~ALr~g~~PE 143 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEALRDGIYPE 143 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHHhcCCCCc
Confidence 8888876553332 245688888887 3467777774 455444455
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.40 E-value=0.00023 Score=55.43 Aligned_cols=106 Identities=23% Similarity=0.304 Sum_probs=42.4
Q ss_pred HHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCC
Q 012044 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179 (472)
Q Consensus 100 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 179 (472)
..|..+.+|+.+.+... +.......|.++++|+.+.+.+. ........+..++.++.+.+.. .........+..+
T Consensus 6 ~~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccc
Confidence 34556666677666643 22333455666666666666552 2222223455555566666643 1222223344455
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEec
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (472)
++|+.+.+..+ +.......|.++ +|+.+.+.
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555555432 333333344444 55555544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=5e-05 Score=64.44 Aligned_cols=98 Identities=24% Similarity=0.317 Sum_probs=77.8
Q ss_pred CCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc----ccccCceeeccCCccChhHH-hhccCCcccccccc
Q 012044 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTL 445 (472)
Q Consensus 371 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l 445 (472)
+.+.+.|+.++|.+++. +....++.|++|.|+-|.|+.. .|++|++|.|..|.|.+... .++.++|+|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34677899999999874 4557899999999999999887 79999999999999987543 56899999999999
Q ss_pred ccccC---CHHHHHHhhccCCCCceecC
Q 012044 446 ESCKV---TANDIKRLQSRDLPNLVSFR 470 (472)
Q Consensus 446 ~~~~l---~~~~~~~l~~~~~~~l~~l~ 470 (472)
..|+= .+.......-..+|+|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99873 33334444445688888763
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=5.7e-05 Score=56.96 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=55.7
Q ss_pred ccEEecccCCCCH--HHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEc
Q 012044 278 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (472)
Q Consensus 278 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (472)
+..++++.|++.. ..+..+.....|..+++++|.+.+.+...-..+|.++.+++.+|.+++. |..++.++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhccc
Confidence 3445555554432 2223334445555666666665554444444455566666666665553 333556666666666
Q ss_pred CCCCCChHHHHHHhCCCCCCEEeCCCCccCh
Q 012044 356 DARQITDTGLAALTSLTGLTHLDLFGARITD 386 (472)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 386 (472)
+.|.+... +..+..+.++..|+..+|....
T Consensus 108 ~~N~l~~~-p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 108 RFNPLNAE-PRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccCccccc-hHHHHHHHhHHHhcCCCCcccc
Confidence 66665543 3334345555555555554444
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00016 Score=58.47 Aligned_cols=84 Identities=31% Similarity=0.386 Sum_probs=59.3
Q ss_pred CccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhh-CCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
.++.++-+++.|..+..+.+.+++.++.|.+.+|..+.+.....++ -.++|+.|+|++|.-++......+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666677777777777777777777777777767666666664 346777777777777777777777777777777
Q ss_pred eccCc
Q 012044 137 DLERC 141 (472)
Q Consensus 137 ~l~~~ 141 (472)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00018 Score=60.72 Aligned_cols=85 Identities=22% Similarity=0.147 Sum_probs=40.9
Q ss_pred ccCCCCCcEEEecCC--CCChhHHHhhhcCCCCcEEeccCCcCCh-hHHHHhhcCCCCcEEEccccccCh---hHHHHhc
Q 012044 200 LKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD---ECLVHLK 273 (472)
Q Consensus 200 l~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~l~ 273 (472)
+..+++|++|.++.| +...........+|+|+++++++|.+.. .....+..+++|..|++.+|..+. .-...+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 444555555555555 3333322233344666666666665542 111223445556666666554332 2223345
Q ss_pred CCCCccEEecc
Q 012044 274 GLTNLESLNLD 284 (472)
Q Consensus 274 ~~~~L~~L~l~ 284 (472)
-+++|++++-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 55666666543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.0002 Score=60.52 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=41.8
Q ss_pred CCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCC--CCChHHHHHHhCCCCCCEEeCCCCccChhH-HHHhhcCCCCcE
Q 012044 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR--QITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRS 400 (472)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~ 400 (472)
..|+.+.+.+++++. ...+..+|+|++|.++.| .+..........+|+|+++++++|++.... ...+..+++|..
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 445555555555542 233455667777777776 333322222244577777777777665311 112233444444
Q ss_pred EEecCCcc
Q 012044 401 LEICGGGL 408 (472)
Q Consensus 401 L~l~~~~~ 408 (472)
|++.+|..
T Consensus 121 Ldl~n~~~ 128 (260)
T KOG2739|consen 121 LDLFNCSV 128 (260)
T ss_pred hhcccCCc
Confidence 44444433
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.90 E-value=0.0016 Score=59.97 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=67.2
Q ss_pred HhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCC-ccCchhHHHhhCCCC
Q 012044 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTN 325 (472)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 325 (472)
.+..+.+++.|++++|.+... | .-.++|++|.+.+|.-....+..+ .++|+.|.+++| .+.. -.++
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------cccc
Confidence 344567777888887755432 2 123457788777763322222222 146777777766 3221 1245
Q ss_pred CCEeeecCCCCChhHHHhhcCC-CCCCEEEcCCCCCC-hHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEe
Q 012044 326 LESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (472)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 403 (472)
|+.|++.++.... +..+ ++|++|.+.++... ...... .-.++|++|.+++|..... |..+ ..+|+.|.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~L-P~~L--P~SLk~L~l 184 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIIL-PEKL--PESLQSITL 184 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheecccccccccccccc-ccCCcccEEEecCCCcccC-cccc--cccCcEEEe
Confidence 6666665443321 1222 35666666432211 000000 0124677777777664432 2111 246666666
Q ss_pred cCC
Q 012044 404 CGG 406 (472)
Q Consensus 404 ~~~ 406 (472)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 554
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00081 Score=54.59 Aligned_cols=104 Identities=28% Similarity=0.342 Sum_probs=70.0
Q ss_pred CCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc-cChhHHHHhhcCCCCcEEEecCCcccccccccCceeeccCC-cc
Q 012044 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNS-RI 426 (472)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n-~~ 426 (472)
.++.++-+++.+...+...+..+++++.|.+.+|. +.+..-..+.+ ..++|+.|+|+.| .|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-----------------~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-----------------LAPSLQDLDLSGCPRI 164 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-----------------cccchheeeccCCCee
Confidence 46777777888888888888888888888888874 33332233322 2466777777777 57
Q ss_pred ChhHHhhccCCcccccccccccc-CC-HHHHHHhhccCCCCceec
Q 012044 427 TSAGLRHLKPLKNLRSLTLESCK-VT-ANDIKRLQSRDLPNLVSF 469 (472)
Q Consensus 427 ~~~~~~~l~~~~~L~~L~l~~~~-l~-~~~~~~l~~~~~~~l~~l 469 (472)
++.+...+.++++|+.|.+.+=+ +. ....+..-.+.+|++...
T Consensus 165 T~~GL~~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 165 TDGGLACLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred chhHHHHHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 88888888889999999998755 11 122344445578887653
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.46 E-value=0.0072 Score=55.89 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=85.6
Q ss_pred HHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCC-CCChHHHHHHhC
Q 012044 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 370 (472)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 370 (472)
....+..+.++..|++++|.+...+ .-.++|+.|.+.+|.--...+..+ .++|++|.+++| .+.. -
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------L 110 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------L 110 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------c
Confidence 3344556789999999999766543 223579999998874322233333 268999999988 4432 1
Q ss_pred CCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcc------cccccccCceeeccCCccChhHHhhccCCccccccc
Q 012044 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL------TDAGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 444 (472)
Q Consensus 371 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 444 (472)
.++|+.|++.++..... +. -.++|+.|.+.++.. ...-.++|+.|++++|.... .|..+ ..+|+.|+
T Consensus 111 P~sLe~L~L~~n~~~~L-~~---LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ 183 (426)
T PRK15386 111 PESVRSLEIKGSATDSI-KN---VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSIT 183 (426)
T ss_pred ccccceEEeCCCCCccc-cc---CcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCcEEE
Confidence 35688888876654331 11 124677777754321 11133689999999997653 22223 25888888
Q ss_pred cccc
Q 012044 445 LESC 448 (472)
Q Consensus 445 l~~~ 448 (472)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 8765
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.97 E-value=0.00098 Score=63.72 Aligned_cols=194 Identities=31% Similarity=0.412 Sum_probs=122.7
Q ss_pred CcEEEccccccChhHH----HHhcCCCCccEEecccCCCCHHHHHHhhC----C-CCCCEEecCCCccCchhH----HHh
Q 012044 254 LKVLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTG----L-CNLKCLELSDTQVGSSGL----RHL 320 (472)
Q Consensus 254 L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~-~~L~~L~l~~~~~~~~~~----~~l 320 (472)
+..+.+.+|.+.+... ..+...+.|..|++++|.+.+.....+.. . +.++.|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777655333 34567789999999999887665544432 1 456677777776655433 344
Q ss_pred hCCCCCCEeeecCCCCChhHH----Hhhc----CCCCCCEEEcCCCCCChHHHHH----HhCCCC-CCEEeCCCCccChh
Q 012044 321 SGLTNLESINLSFTGISDGSL----RKLA----GLSSLKSLNLDARQITDTGLAA----LTSLTG-LTHLDLFGARITDS 387 (472)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~~----l~~~~~-L~~L~l~~~~l~~~ 387 (472)
...+.++.+++..|.+..... ..+. ...++++|.+.+|.++...... +...+. +..+++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 457788888888886643221 2222 3567888888888877544433 344455 66688888887765
Q ss_pred HHHHh----hcC-CCCcEEEecCCccccc----------ccccCceeeccCCccChhHHhh----ccCCcccccccccc
Q 012044 388 GAAYL----RNF-KNLRSLEICGGGLTDA----------GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLES 447 (472)
Q Consensus 388 ~~~~l----~~~-~~L~~L~l~~~~~~~~----------~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L~l~~ 447 (472)
+...+ ... +.+++++++.|.+++. .++.++.+.+++|.+.+..... +.....+.++.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 44332 333 5667788888877765 5667777777777777644432 23344555555553
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.57 E-value=0.0015 Score=62.38 Aligned_cols=183 Identities=29% Similarity=0.380 Sum_probs=124.5
Q ss_pred ccEEecccCCCCHHHHHH----hhCCCCCCEEecCCCccCchhHHHhh----CC-CCCCEeeecCCCCChhHH----Hhh
Q 012044 278 LESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGSL----RKL 344 (472)
Q Consensus 278 L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~----~~~ 344 (472)
+..+.+.+|.+....... +...++|..|++++|.++......+. .. ..+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777888888776544433 34567899999999988865554443 22 456778888887765433 334
Q ss_pred cCCCCCCEEEcCCCCCChHHH----HHHh----CCCCCCEEeCCCCccChhHHH----HhhcCCC-CcEEEecCCccccc
Q 012044 345 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA 411 (472)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~----~~l~----~~~~L~~L~l~~~~l~~~~~~----~l~~~~~-L~~L~l~~~~~~~~ 411 (472)
.....++.++++.|.+...+. ..+. ...++++|++..|.++..... .+...+. +..++++.|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 457788888888887753322 2233 345688899998887754332 3355555 66788888887765
Q ss_pred ----------cc-ccCceeeccCCccChhHHh----hccCCccccccccccccCCHHHHHHhhc
Q 012044 412 ----------GL-TGLVSLNVSNSRITSAGLR----HLKPLKNLRSLTLESCKVTANDIKRLQS 460 (472)
Q Consensus 412 ----------~~-~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 460 (472)
.+ ..+++++++.|.+...... .+..++.++.+.++.|++.........+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~ 312 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLE 312 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHH
Confidence 23 5668899999988865443 4556789999999999988877655443
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.60 E-value=0.015 Score=29.63 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=10.9
Q ss_pred ccccccccccccCCHHHHHHh
Q 012044 438 KNLRSLTLESCKVTANDIKRL 458 (472)
Q Consensus 438 ~~L~~L~l~~~~l~~~~~~~l 458 (472)
++|++|+|++|+++++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455566666666665555544
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.30 E-value=0.052 Score=28.28 Aligned_cols=24 Identities=46% Similarity=0.884 Sum_probs=14.7
Q ss_pred CCCCCeeecCCccccChhhHHHhh
Q 012044 80 CSNLQSLDFNFCIQISDGGLEHLR 103 (472)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~ 103 (472)
|++|+.|++++|..+++.+...+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666555443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.14 E-value=0.036 Score=28.22 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=14.3
Q ss_pred cccCceeeccCCccChhHHhhc
Q 012044 413 LTGLVSLNVSNSRITSAGLRHL 434 (472)
Q Consensus 413 ~~~L~~L~l~~n~~~~~~~~~l 434 (472)
+++|+.|++++|++.+.+...+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3678888888888877766654
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.12 E-value=0.095 Score=27.25 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=16.7
Q ss_pred Ccccccccccccc-CCHHHHHHhh
Q 012044 437 LKNLRSLTLESCK-VTANDIKRLQ 459 (472)
Q Consensus 437 ~~~L~~L~l~~~~-l~~~~~~~l~ 459 (472)
|++|++|+|++|+ +++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 5677888888875 7777776664
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.53 E-value=0.045 Score=27.15 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=8.3
Q ss_pred cCceeeccCCccC
Q 012044 415 GLVSLNVSNSRIT 427 (472)
Q Consensus 415 ~L~~L~l~~n~~~ 427 (472)
+|+.|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666666
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.12 E-value=0.19 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=16.4
Q ss_pred ccccccccccccCCHHHHHHhhc
Q 012044 438 KNLRSLTLESCKVTANDIKRLQS 460 (472)
Q Consensus 438 ~~L~~L~l~~~~l~~~~~~~l~~ 460 (472)
++|++|+|++|.+...++..+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777766653
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.19 E-value=0.45 Score=21.78 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=3.2
Q ss_pred CceeeccCCc
Q 012044 416 LVSLNVSNSR 425 (472)
Q Consensus 416 L~~L~l~~n~ 425 (472)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333444433
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.27 E-value=0.38 Score=45.87 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=19.9
Q ss_pred hCCCCCCEEeCCCCccChhHH--HHhhcCCCCcEEEecCC
Q 012044 369 TSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICGG 406 (472)
Q Consensus 369 ~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~~ 406 (472)
.+.|.+..+.+++|++..... ..-...|.|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345666677777776554321 11134455555555555
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.11 E-value=1.4 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=11.5
Q ss_pred CCCCEEeCCCCccChhHHHH
Q 012044 372 TGLTHLDLFGARITDSGAAY 391 (472)
Q Consensus 372 ~~L~~L~l~~~~l~~~~~~~ 391 (472)
++|+.|++++|++...++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666554443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.11 E-value=1.4 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=11.5
Q ss_pred CCCCEEeCCCCccChhHHHH
Q 012044 372 TGLTHLDLFGARITDSGAAY 391 (472)
Q Consensus 372 ~~L~~L~l~~~~l~~~~~~~ 391 (472)
++|+.|++++|++...++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666554443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.34 E-value=9 Score=37.04 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=46.6
Q ss_pred CCCCCCEeeecCCCCChhH-HHhh-cCCCCCCEEEcCCC--CCChH-HHHHHhCCCCCCEEeCCCCccChhHH------H
Q 012044 322 GLTNLESINLSFTGISDGS-LRKL-AGLSSLKSLNLDAR--QITDT-GLAALTSLTGLTHLDLFGARITDSGA------A 390 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~--~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~------~ 390 (472)
..|.+..+.+++|++.... ...+ ...|+|..|+|++| .+... ....++. ..|++|.+.+|++..... .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHH
Confidence 5577778888888664321 1112 24688888888888 33322 1222333 347888888887765421 1
Q ss_pred H-hhcCCCCcEEE
Q 012044 391 Y-LRNFKNLRSLE 402 (472)
Q Consensus 391 ~-l~~~~~L~~L~ 402 (472)
. -..+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 1 13577776665
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.93 E-value=7.9 Score=20.10 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=6.0
Q ss_pred cCceeeccCCcc
Q 012044 415 GLVSLNVSNSRI 426 (472)
Q Consensus 415 ~L~~L~l~~n~~ 426 (472)
+|+.|++++|.+
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444555555544
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=58.11 E-value=0.16 Score=42.74 Aligned_cols=82 Identities=15% Similarity=0.014 Sum_probs=42.1
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
+..++.|+++.+... ..-..++.++.+.+|+++.+ . ....+..+.....++.+++..|.. ...|.+++..+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~skn-q-~~~~~~d~~q~~e~~~~~~~~n~~--~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKN-Q-IKFLPKDAKQQRETVNAASHKNNH--SQQPKSQKKEPHPKK 115 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHh-h-HhhChhhHHHHHHHHHHHhhccch--hhCCccccccCCcch
Confidence 456666666655442 22233444455566666653 2 223344444444555555555543 344556666666666
Q ss_pred EeccCcc
Q 012044 136 LDLERCT 142 (472)
Q Consensus 136 L~l~~~~ 142 (472)
++..++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 6665554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=53.33 E-value=49 Score=31.62 Aligned_cols=240 Identities=19% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHh---hcCCCCcEEEccccccChhHHHHh---cCCCC
Q 012044 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNLGFNEITDECLVHL---KGLTN 277 (472)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~ 277 (472)
+.+++++++.+.+....+-.+..-..= +.+..|.........+ ..-..+.+++++.+...+..+..+ .....
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Q ss_pred ccEEecccCCCCHHHHHHhhCCC---CCCEEecCCCc--------cCchhHHHhhCCCCCCEeeecCCCCChhHHHhhc-
Q 012044 278 LESLNLDSCGIGDEGLVNLTGLC---NLKCLELSDTQ--------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA- 345 (472)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~--------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~- 345 (472)
++.++.+...++-+....-...+ ++...+++.+. .....-..+..-+++ +|++.++....+-+..+-
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Q ss_pred -----CCCCCCEEEcCCCCCChHHHHHHhCC---CCCCEEeCCCCccChhHHHHh--hcCCCCcEEEecCCccccc----
Q 012044 346 -----GLSSLKSLNLDARQITDTGLAALTSL---TGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGGLTDA---- 411 (472)
Q Consensus 346 -----~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~l~~~~~~~l--~~~~~L~~L~l~~~~~~~~---- 411 (472)
.-..=-+++++.|...+ ...+..+ .++++|.+..|.+.+...... ..-+..+.+.+.+..-...
T Consensus 322 gla~ne~t~g~rldl~~cp~~~--a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~ 399 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLER--AEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSS 399 (553)
T ss_pred ccccccccccccCChhhccccc--cchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccc
Q ss_pred -----------ccccCceeeccCCccC---hhHHhhccCCccccccccccc
Q 012044 412 -----------GLTGLVSLNVSNSRIT---SAGLRHLKPLKNLRSLTLESC 448 (472)
Q Consensus 412 -----------~~~~L~~L~l~~n~~~---~~~~~~l~~~~~L~~L~l~~~ 448 (472)
..--+..+.++.|... ......+..-+.+++|+|++|
T Consensus 400 ~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn 450 (553)
T KOG4242|consen 400 TEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGN 450 (553)
T ss_pred ccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCC
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=40.43 E-value=18 Score=18.83 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=9.5
Q ss_pred CCCCEEeCCCCccCh
Q 012044 372 TGLTHLDLFGARITD 386 (472)
Q Consensus 372 ~~L~~L~l~~~~l~~ 386 (472)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 356666666666655
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=34.46 E-value=1.6 Score=37.01 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=25.2
Q ss_pred HhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 76 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
.+..+...++||++.+ .+...+ ..|+.+..|..|+++.+.+ ...|..++....++.++..
T Consensus 37 ei~~~kr~tvld~~s~-r~vn~~-~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~ 96 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLVNLG-KNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASH 96 (326)
T ss_pred hhhccceeeeehhhhh-HHHhhc-cchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhh
Confidence 3445555566666554 222111 2223333445555554433 2333444444444444443
No 91
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.77 E-value=1.5e+02 Score=25.10 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=9.8
Q ss_pred cccccccccccCCHHHHH
Q 012044 439 NLRSLTLESCKVTANDIK 456 (472)
Q Consensus 439 ~L~~L~l~~~~l~~~~~~ 456 (472)
.||+-++++-.+.+..+.
T Consensus 272 dLQeAnLRg~Nlk~A~~e 289 (302)
T KOG1665|consen 272 DLQEANLRGVNLKEAHME 289 (302)
T ss_pred chhHhhcccCchhhHHHH
Confidence 455666666555554443
No 92
>PF14162 YozD: YozD-like protein
Probab=21.26 E-value=1.1e+02 Score=18.84 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhccccCH
Q 012044 4 RDISQQIFNELVYSRCLTE 22 (472)
Q Consensus 4 ~e~~~~~~~~l~~~~~~~~ 22 (472)
+|+++=++.+|+.|+.+-.
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 7899999999999988753
Done!