Query 012044
Match_columns 472
No_of_seqs 263 out of 3895
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 20:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 8.6E-42 2.9E-46 341.0 16.9 398 57-458 33-520 (606)
2 3rgz_A Protein brassinosteroid 100.0 4.5E-43 1.5E-47 357.8 7.3 393 54-451 197-717 (768)
3 3rgz_A Protein brassinosteroid 100.0 3.2E-42 1.1E-46 351.5 9.2 346 53-406 174-548 (768)
4 3t6q_A CD180 antigen; protein- 100.0 2.4E-41 8.3E-46 337.8 15.2 393 55-452 55-537 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 9E-40 3.1E-44 326.4 11.2 389 57-451 32-534 (606)
6 4eco_A Uncharacterized protein 100.0 1.3E-40 4.3E-45 332.1 4.4 398 46-454 67-603 (636)
7 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-38 1.8E-42 310.0 23.0 386 57-452 26-511 (549)
8 1ziw_A TOLL-like receptor 3; i 100.0 9.6E-39 3.3E-43 323.2 16.5 393 56-451 48-517 (680)
9 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-39 1.8E-43 325.1 13.2 427 20-453 37-599 (680)
10 2z63_A TOLL-like receptor 4, v 100.0 1.1E-39 3.7E-44 323.8 6.7 386 57-452 28-508 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-39 6E-44 334.7 7.3 391 56-452 23-518 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-39 1.5E-43 321.4 8.9 389 54-452 53-559 (606)
13 4ecn_A Leucine-rich repeat pro 100.0 2.7E-39 9.3E-44 327.5 3.6 395 49-454 315-843 (876)
14 2z7x_B TOLL-like receptor 1, v 100.0 7.7E-37 2.6E-41 299.5 15.9 383 57-451 21-481 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 4E-38 1.4E-42 312.5 6.6 388 54-452 49-532 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-36 8.4E-41 298.1 19.0 401 60-470 8-503 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-36 5.8E-41 297.0 14.7 396 60-471 3-475 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-37 1.8E-41 316.2 8.9 403 60-470 7-510 (844)
19 4eco_A Uncharacterized protein 100.0 5.5E-37 1.9E-41 305.9 8.1 368 73-449 198-630 (636)
20 3v47_A TOLL-like receptor 5B a 100.0 1.6E-35 5.6E-40 285.3 15.2 349 57-428 30-409 (455)
21 3v47_A TOLL-like receptor 5B a 100.0 2.3E-35 8E-40 284.2 14.3 343 54-411 51-410 (455)
22 4ecn_A Leucine-rich repeat pro 100.0 7.9E-36 2.7E-40 302.2 9.5 367 73-449 440-862 (876)
23 1z7x_W Ribonuclease inhibitor; 100.0 1E-33 3.4E-38 273.3 23.6 391 57-469 3-460 (461)
24 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-33 2.6E-37 267.1 29.7 371 33-406 5-437 (461)
25 1o6v_A Internalin A; bacterial 100.0 7.2E-33 2.5E-37 266.8 27.2 340 57-428 46-389 (466)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-34 7.8E-39 284.1 14.8 383 57-452 52-511 (562)
27 2p1m_B Transport inhibitor res 100.0 9.9E-32 3.4E-36 267.9 30.8 460 1-468 8-535 (594)
28 1o6v_A Internalin A; bacterial 100.0 6.1E-32 2.1E-36 260.4 27.8 325 54-410 65-389 (466)
29 3ogk_B Coronatine-insensitive 100.0 1.1E-31 3.9E-36 267.3 29.5 397 46-446 101-546 (592)
30 3ogk_B Coronatine-insensitive 100.0 1.9E-31 6.6E-36 265.7 22.5 414 50-468 66-542 (592)
31 4fmz_A Internalin; leucine ric 100.0 1.7E-30 5.7E-35 241.0 27.1 303 57-409 44-346 (347)
32 4fmz_A Internalin; leucine ric 100.0 2.3E-30 8E-35 240.0 27.2 283 54-360 63-345 (347)
33 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-33 2.6E-37 278.5 10.6 392 57-452 52-581 (635)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-32 1.3E-36 268.3 15.1 363 54-429 73-512 (562)
35 2id5_A Lingo-1, leucine rich r 100.0 6.6E-32 2.3E-36 261.4 16.1 315 109-428 14-334 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 4.7E-32 1.6E-36 262.5 13.6 321 60-386 14-334 (477)
37 2p1m_B Transport inhibitor res 100.0 3.9E-30 1.3E-34 256.4 24.8 412 32-449 67-542 (594)
38 3o6n_A APL1; leucine-rich repe 100.0 2E-30 7E-35 244.1 17.2 310 104-430 43-355 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 4.2E-30 1.4E-34 242.0 18.7 312 79-411 43-354 (390)
40 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-30 1.2E-34 245.9 18.0 337 56-451 41-387 (457)
41 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.9E-34 251.1 16.0 310 105-431 50-362 (597)
42 3oja_B Anopheles plasmodium-re 100.0 3.3E-29 1.1E-33 248.5 16.1 312 79-411 49-360 (597)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-28 3.7E-33 235.6 17.1 308 74-428 35-353 (457)
44 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-29 7.2E-34 253.3 10.7 384 81-471 52-574 (635)
45 1jl5_A Outer protein YOPM; leu 100.0 3.4E-29 1.2E-33 238.9 7.1 301 106-452 91-410 (454)
46 1xku_A Decorin; proteoglycan, 99.9 1.2E-27 4E-32 220.0 14.9 262 181-449 53-330 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-27 1.1E-31 217.2 10.7 282 132-449 34-331 (332)
48 1xku_A Decorin; proteoglycan, 99.9 1.7E-26 5.7E-31 212.3 12.9 290 82-406 32-329 (330)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-27 6.6E-32 216.2 4.7 243 181-425 51-302 (313)
50 2ft3_A Biglycan; proteoglycan, 99.9 5.2E-27 1.8E-31 215.7 7.5 287 82-406 34-330 (332)
51 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-28 1.2E-32 221.0 -0.6 237 48-288 38-280 (313)
52 2z80_A TOLL-like receptor 2, v 99.9 1.3E-25 4.4E-30 208.3 8.9 272 153-428 29-315 (353)
53 1ozn_A Reticulon 4 receptor; N 99.9 2E-25 6.8E-30 200.6 9.6 246 180-449 32-285 (285)
54 2z80_A TOLL-like receptor 2, v 99.9 1.2E-24 4.1E-29 201.8 13.7 281 104-410 29-315 (353)
55 1jl5_A Outer protein YOPM; leu 99.9 1.5E-24 5E-29 206.9 14.1 335 57-452 71-430 (454)
56 2z66_A Variable lymphocyte rec 99.9 5.8E-25 2E-29 199.8 7.6 256 180-436 28-296 (306)
57 2ast_B S-phase kinase-associat 99.9 4.7E-24 1.6E-28 196.7 13.5 294 1-344 11-313 (336)
58 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-25 1.6E-29 201.1 3.9 233 203-448 33-272 (317)
59 3zyi_A Leucine-rich repeat-con 99.9 1.1E-23 3.8E-28 201.9 12.2 225 58-286 76-300 (452)
60 2z66_A Variable lymphocyte rec 99.9 2.6E-24 8.8E-29 195.5 6.5 249 60-313 10-261 (306)
61 3zyj_A Leucine-rich repeat-con 99.9 1.4E-23 4.7E-28 200.6 11.8 227 81-312 64-291 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 8.2E-24 2.8E-28 190.1 9.4 222 134-359 14-236 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 1.7E-23 6E-28 199.8 11.9 246 133-384 45-291 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 2.1E-23 7.1E-28 200.0 12.0 226 155-383 75-301 (452)
65 4fcg_A Uncharacterized protein 99.9 1.1E-23 3.8E-28 192.5 9.1 223 55-285 79-310 (328)
66 1wwl_A Monocyte differentiatio 99.9 9E-25 3.1E-29 198.7 0.2 243 203-452 42-310 (312)
67 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 192.1 6.9 232 154-406 80-311 (328)
68 2ca6_A RAN GTPase-activating p 99.9 1.2E-21 4E-26 184.0 19.3 251 197-447 25-339 (386)
69 2ast_B S-phase kinase-associat 99.9 8.5E-22 2.9E-26 181.5 17.9 230 180-434 70-313 (336)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-23 5.9E-28 190.7 5.9 250 206-469 12-267 (317)
71 2ca6_A RAN GTPase-activating p 99.9 3E-21 1E-25 181.2 21.3 187 225-411 91-318 (386)
72 3goz_A Leucine-rich repeat-con 99.9 3.3E-22 1.1E-26 185.7 14.1 245 185-429 3-299 (362)
73 1wwl_A Monocyte differentiatio 99.9 1.2E-23 4.2E-28 191.2 2.3 157 180-337 95-266 (312)
74 3oja_A Leucine-rich immune mol 99.9 7.1E-23 2.4E-27 197.2 7.1 232 179-446 33-270 (487)
75 3goz_A Leucine-rich repeat-con 99.9 5.3E-22 1.8E-26 184.4 12.4 251 160-411 3-299 (362)
76 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-21 1.9E-25 187.8 18.6 261 131-435 40-305 (622)
77 3oja_A Leucine-rich immune mol 99.8 1.9E-21 6.4E-26 187.3 8.9 233 107-379 35-269 (487)
78 2z62_A TOLL-like receptor 4, v 99.8 1.1E-21 3.8E-26 175.2 6.5 199 229-451 29-237 (276)
79 3g06_A SSPH2 (leucine-rich rep 99.8 5.3E-20 1.8E-24 180.7 18.9 260 106-411 40-299 (622)
80 3rfs_A Internalin B, repeat mo 99.8 4.9E-21 1.7E-25 170.4 6.9 209 226-439 39-247 (272)
81 2z62_A TOLL-like receptor 4, v 99.8 9.1E-21 3.1E-25 169.3 8.3 203 58-288 29-236 (276)
82 2o6q_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 167.5 8.5 207 52-264 11-217 (270)
83 4glp_A Monocyte differentiatio 99.8 2.4E-20 8.2E-25 169.4 9.3 199 252-452 91-308 (310)
84 3rfs_A Internalin B, repeat mo 99.8 7.8E-21 2.7E-25 169.1 4.5 204 178-392 39-242 (272)
85 2o6q_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 164.9 8.5 180 180-383 37-216 (270)
86 1h6u_A Internalin H; cell adhe 99.8 2.2E-19 7.5E-24 162.5 12.7 191 224-428 37-231 (308)
87 4glp_A Monocyte differentiatio 99.8 8.3E-20 2.9E-24 165.8 8.8 224 181-409 65-307 (310)
88 1h6u_A Internalin H; cell adhe 99.8 7.4E-19 2.5E-23 159.0 14.2 195 177-411 38-232 (308)
89 1p9a_G Platelet glycoprotein I 99.8 5.9E-19 2E-23 158.0 8.5 203 151-385 6-208 (290)
90 1p9a_G Platelet glycoprotein I 99.8 3.8E-19 1.3E-23 159.3 7.1 205 199-410 5-209 (290)
91 2xwt_C Thyrotropin receptor; s 99.8 1.7E-19 5.9E-24 157.3 3.1 179 204-385 31-218 (239)
92 2xwt_C Thyrotropin receptor; s 99.8 2.1E-19 7.3E-24 156.7 3.0 197 180-382 31-236 (239)
93 3m19_A Variable lymphocyte rec 99.7 3.6E-18 1.2E-22 150.0 6.2 157 253-409 36-192 (251)
94 3m19_A Variable lymphocyte rec 99.7 1.5E-17 5.2E-22 146.0 8.0 65 322-386 129-193 (251)
95 1h6t_A Internalin B; cell adhe 99.7 5.4E-17 1.8E-21 145.5 9.7 174 224-411 42-215 (291)
96 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.8E-21 141.8 12.6 173 201-387 43-215 (291)
97 4ezg_A Putative uncharacterize 99.7 9.4E-17 3.2E-21 135.2 8.8 129 320-452 62-195 (197)
98 3sb4_A Hypothetical leucine ri 99.7 1E-16 3.4E-21 146.7 7.7 125 275-402 201-327 (329)
99 2o6s_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 139.5 3.8 163 276-439 28-190 (208)
100 1m9s_A Internalin B; cell inva 99.6 4.1E-16 1.4E-20 153.1 10.4 174 224-411 39-212 (605)
101 1m9s_A Internalin B; cell inva 99.6 1.2E-15 4.2E-20 149.7 11.9 175 200-388 39-213 (605)
102 4ezg_A Putative uncharacterize 99.6 3.3E-15 1.1E-19 125.7 12.6 149 131-288 44-193 (197)
103 3sb4_A Hypothetical leucine ri 99.6 1.5E-16 5.1E-21 145.6 4.6 287 80-379 24-328 (329)
104 2o6s_A Variable lymphocyte rec 99.6 7.4E-16 2.5E-20 131.1 4.2 158 181-345 29-186 (208)
105 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.6E-20 140.4 5.7 240 61-310 13-256 (350)
106 2v9t_B SLIT homolog 2 protein 99.6 1.5E-15 5.3E-20 130.0 5.6 146 279-427 14-165 (220)
107 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.6E-20 134.1 5.1 167 251-430 18-188 (263)
108 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.4E-20 140.5 5.9 153 255-410 21-177 (361)
109 4ay9_X Follicle-stimulating ho 99.6 9.4E-16 3.2E-20 141.5 4.2 223 57-285 30-255 (350)
110 3e6j_A Variable lymphocyte rec 99.6 2.6E-15 8.8E-20 129.5 6.6 127 300-427 40-172 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 3.4E-15 1.2E-19 127.8 6.7 146 279-427 14-166 (220)
112 3cvr_A Invasion plasmid antige 99.5 7.5E-15 2.6E-19 142.5 8.7 182 228-436 59-252 (571)
113 2xot_A Amphoterin-induced prot 99.5 3E-15 1E-19 138.6 5.6 176 207-385 21-202 (361)
114 2v9t_B SLIT homolog 2 protein 99.5 2.8E-15 9.5E-20 128.3 4.9 135 276-410 32-166 (220)
115 1xeu_A Internalin C; cellular 99.5 2.8E-15 9.6E-20 132.1 4.6 167 206-411 21-187 (263)
116 3un9_A NLR family member X1; l 99.5 5E-14 1.7E-18 130.1 13.1 136 252-387 72-226 (372)
117 3un9_A NLR family member X1; l 99.5 6.1E-14 2.1E-18 129.6 12.3 179 275-453 71-285 (372)
118 3cvr_A Invasion plasmid antige 99.5 7E-14 2.4E-18 135.7 12.6 196 47-273 49-251 (571)
119 4fs7_A Uncharacterized protein 99.5 2.8E-14 9.7E-19 133.8 8.3 310 74-403 64-373 (394)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 7.6E-14 2.6E-18 119.4 10.1 130 132-262 33-163 (220)
121 4fs7_A Uncharacterized protein 99.5 1.5E-14 5.3E-19 135.6 6.2 328 52-401 66-393 (394)
122 4fdw_A Leucine rich hypothetic 99.5 4.2E-14 1.4E-18 132.0 8.6 265 79-359 111-381 (401)
123 1dce_A Protein (RAB geranylger 99.5 1.6E-15 5.5E-20 148.0 -1.6 104 301-409 442-546 (567)
124 3e6j_A Variable lymphocyte rec 99.5 2.1E-14 7.1E-19 123.8 5.4 133 276-409 40-172 (229)
125 4fdw_A Leucine rich hypothetic 99.5 9.2E-14 3.1E-18 129.6 9.7 266 103-383 110-381 (401)
126 2je0_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 113.3 6.2 128 300-447 17-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 116.1 4.5 133 299-451 23-160 (168)
128 1dce_A Protein (RAB geranylger 99.4 2.6E-15 9E-20 146.5 -3.3 196 201-403 346-567 (567)
129 2je0_A Acidic leucine-rich nuc 99.4 8.2E-13 2.8E-17 105.6 11.0 128 155-284 17-148 (149)
130 2ell_A Acidic leucine-rich nuc 99.4 7.4E-13 2.5E-17 108.2 10.1 108 130-240 23-132 (168)
131 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 110.8 5.0 137 298-455 17-157 (176)
132 1w8a_A SLIT protein; signaling 99.3 6.7E-13 2.3E-17 110.9 4.7 123 303-428 11-140 (192)
133 4b8c_D Glucose-repressible alc 99.3 1E-13 3.5E-18 139.7 -0.7 152 269-424 217-369 (727)
134 2o6r_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 104.9 6.5 124 302-428 9-138 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5E-17 107.3 3.7 108 250-360 17-125 (176)
136 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.4E-16 103.0 8.8 88 177-264 51-138 (192)
137 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.7E-17 132.2 2.0 163 56-225 172-337 (727)
138 4gt6_A Cell surface protein; l 99.2 1.1E-11 3.9E-16 116.1 8.7 154 75-236 57-213 (394)
139 2wfh_A SLIT homolog 2 protein 99.2 5.1E-12 1.8E-16 105.4 5.6 121 303-427 13-139 (193)
140 1ds9_A Outer arm dynein; leuci 99.2 1.2E-13 4E-18 116.3 -4.8 126 272-402 44-180 (198)
141 2o6r_A Variable lymphocyte rec 99.2 8.3E-12 2.8E-16 102.9 6.3 109 301-409 29-137 (177)
142 1ds9_A Outer arm dynein; leuci 99.2 7.3E-14 2.5E-18 117.6 -6.4 143 295-452 43-186 (198)
143 4gt6_A Cell surface protein; l 99.2 4E-11 1.4E-15 112.4 10.5 321 58-405 65-387 (394)
144 2wfh_A SLIT homolog 2 protein 99.2 6.7E-12 2.3E-16 104.7 4.5 108 301-409 32-139 (193)
145 3e4g_A ATP synthase subunit S, 99.1 8.3E-11 2.8E-15 94.2 6.2 91 57-147 61-155 (176)
146 2ra8_A Uncharacterized protein 99.1 5.6E-10 1.9E-14 102.1 11.7 140 318-460 166-329 (362)
147 2ra8_A Uncharacterized protein 99.0 3.8E-09 1.3E-13 96.6 15.3 34 275-308 192-227 (362)
148 4h09_A Hypothetical leucine ri 99.0 5.3E-10 1.8E-14 104.2 8.5 146 247-397 212-357 (379)
149 4h09_A Hypothetical leucine ri 99.0 6.8E-10 2.3E-14 103.5 7.8 300 78-405 43-342 (379)
150 3g39_A Variable lymphocyte rec 99.0 3E-10 1E-14 92.6 4.3 85 324-408 30-114 (170)
151 2r9u_A Variable lymphocyte rec 98.9 5.3E-10 1.8E-14 91.4 4.3 85 324-408 33-117 (174)
152 1io0_A Tropomodulin; LRR prote 98.9 9.9E-09 3.4E-13 84.7 10.2 120 317-454 29-167 (185)
153 3g39_A Variable lymphocyte rec 98.9 4.5E-09 1.6E-13 85.5 7.7 85 180-264 30-114 (170)
154 2r9u_A Variable lymphocyte rec 98.8 8.2E-09 2.8E-13 84.3 7.8 85 180-264 33-117 (174)
155 1io0_A Tropomodulin; LRR prote 98.8 2.7E-08 9.2E-13 82.0 10.9 118 292-409 28-164 (185)
156 3e4g_A ATP synthase subunit S, 98.8 5.3E-09 1.8E-13 83.8 5.6 90 81-171 61-155 (176)
157 2ifg_A High affinity nerve gro 98.6 2.4E-08 8E-13 91.8 5.7 103 280-385 12-116 (347)
158 2ifg_A High affinity nerve gro 98.6 1.4E-07 4.8E-12 86.6 8.8 91 123-216 24-115 (347)
159 3rw6_A Nuclear RNA export fact 98.0 1.8E-05 6E-10 68.5 7.7 63 54-118 167-232 (267)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 0.00021 7.1E-09 58.3 12.8 61 322-382 68-136 (197)
161 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5E-10 69.0 5.3 75 370-444 168-257 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 0.00013 4.5E-09 59.5 10.5 87 320-406 37-136 (197)
163 3rfe_A Platelet glycoprotein I 95.6 0.009 3.1E-07 45.3 3.6 36 415-450 32-67 (130)
164 3rfe_A Platelet glycoprotein I 91.1 0.15 5E-06 38.5 3.1 36 349-384 32-67 (130)
165 2lz0_A Uncharacterized protein 77.0 0.71 2.4E-05 32.7 0.8 38 76-115 15-52 (100)
166 2lz0_A Uncharacterized protein 70.2 0.62 2.1E-05 33.0 -0.8 46 93-140 7-52 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.6e-42 Score=341.04 Aligned_cols=398 Identities=21% Similarity=0.226 Sum_probs=233.5
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+.+++|+++++.+++..+..++++++|++|++++| .+....+..|..+++|++|++++|.+ ....|..|+++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcc-cccChhhhcccccccEe
Confidence 35677777777776665666677777777777776 56666666667777777777777664 33445566677777777
Q ss_pred eccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCc--EEEecCC
Q 012044 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC 214 (472)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~ 214 (472)
++++|......+..+..+++|++|++++|. +.......+..+++|+.|++++|.++...+..++.+++|+ +|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 777765444344556667777777777644 2222222333466666666666666655455555555555 4555554
Q ss_pred CCCh---------------------------------------------------------------------------h
Q 012044 215 PVTA---------------------------------------------------------------------------A 219 (472)
Q Consensus 215 ~~~~---------------------------------------------------------------------------~ 219 (472)
.+.. .
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 4332 2
Q ss_pred HHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHH-HHHHhhC
Q 012044 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTG 298 (472)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~ 298 (472)
.+..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... ....+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 22224445555555555555542 223445555666666666555544444455555566666655544321 1122445
Q ss_pred CCCCCEEecCCCccCchh--HHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHH-HHHhCCCCCC
Q 012044 299 LCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT 375 (472)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~ 375 (472)
+++|+.|++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 556666666666555443 3445566666666666666655555555566666666666666554322 2245566677
Q ss_pred EEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc---------ccccCceeeccCCccChhHHhhccCCccccccccc
Q 012044 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 446 (472)
Q Consensus 376 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 446 (472)
.|++++|.+.+..+..+..+++|++|++++|.+++. .+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 777777666666566666667777777777766541 45666677777776666666666666677777777
Q ss_pred cccCCHHHHHHh
Q 012044 447 SCKVTANDIKRL 458 (472)
Q Consensus 447 ~~~l~~~~~~~l 458 (472)
+|+++......+
T Consensus 509 ~N~l~~~~~~~l 520 (606)
T 3t6q_A 509 HNRLTSSSIEAL 520 (606)
T ss_dssp SSCCCGGGGGGG
T ss_pred CCccCcCChhHh
Confidence 776665444333
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-43 Score=357.80 Aligned_cols=393 Identities=22% Similarity=0.198 Sum_probs=197.1
Q ss_pred hcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
..++++++|++++|.+.+..+. ++.+++|++|++++| .+....+..+..+++|++|++++|.+. ...|.. .+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~--~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFV-GPIPPL--PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCE-ESCCCC--CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCccc-CccCcc--ccCCC
Confidence 3456677777776666654444 666667777777765 455555666666666666666666542 111111 34444
Q ss_pred cEEeccCcccc-------------------------cccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEee
Q 012044 134 VKLDLERCTRI-------------------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (472)
Q Consensus 134 ~~L~l~~~~~~-------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 188 (472)
++|++++|... ...+..+..+++|++|++++|..........+..+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 44444444322 22223333344444444443221111111123333444444444
Q ss_pred ccccChhhhhhccC---------------------------CCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCC
Q 012044 189 CSKVTDSGIAYLKG---------------------------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (472)
Q Consensus 189 ~~~~~~~~~~~l~~---------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 241 (472)
+|.+++..+..+.+ +++|++|++.+|.+.+..+..+..+++|+.|++++|.+.
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 33332222222211 233344444433333333334444444555555554444
Q ss_pred hhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhh
Q 012044 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321 (472)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 321 (472)
...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 44444444455555555555554444444445555555555555555444444455555555555555555544444555
Q ss_pred CCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHH----------------------------------
Q 012044 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA---------------------------------- 367 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------------- 367 (472)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 5555555555555555444555555555555555555433211111
Q ss_pred ------------------------------------HhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 368 ------------------------------------LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 368 ------------------------------------l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
++.+++|+.|++++|.+++.+|..++.++.|+.|++++|.+++.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 11234455666666666655566666666666666666666533
Q ss_pred ------ccccCceeeccCCccChhHHhhccCCccccccccccccCC
Q 012044 412 ------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 412 ------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 451 (472)
.+++|+.|++++|++++..|..+..++.|++|++++|+++
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 4566666666666666666666666666666666666654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-42 Score=351.50 Aligned_cols=346 Identities=20% Similarity=0.172 Sum_probs=189.2
Q ss_pred HhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCC
Q 012044 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (472)
Q Consensus 53 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 132 (472)
...++++++|+++++.+.+..+ ++.+++|++|++++| .+....+. +..+++|++|++++|.+ ....+..+.++++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNKL-SGDFSRAISTCTE 248 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCCEEECCSSCC-CSCHHHHTTTCSS
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcc-cccCCCCCEEECcCCcC-CCcccHHHhcCCC
Confidence 4578999999999998876543 378999999999998 56655444 88999999999999985 5567899999999
Q ss_pred CcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccC-CCCCCEEEeeccccChhhhhhccCCCCCcEEEe
Q 012044 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (472)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (472)
|++|++++|......+.. .+++|++|++++|. +.+..+..+.. +++|++|++++|.++...+..++.+++|++|++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 999999998654333322 66777777777643 22233333333 356666666666555444555555555555555
Q ss_pred cCCCCChhHHH-hhhcCCCCcEEeccCCcCChhHHHHhhc---------------------------CCCCcEEEccccc
Q 012044 212 EGCPVTAACLD-SLSALGSLFYLNLNRCQLSDDGCEKFSK---------------------------IGSLKVLNLGFNE 263 (472)
Q Consensus 212 ~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~---------------------------~~~L~~L~l~~~~ 263 (472)
++|.+.+..+. .+..+++|+.|++++|.+....+..+.. +++|+.|++++|.
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 55554422222 2444555555555544433222221211 2233444444443
Q ss_pred cChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHh
Q 012044 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (472)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (472)
+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 33333333444444444444444433333333444444444444444444333334444444444444444444333444
Q ss_pred hcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCC
Q 012044 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (472)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 406 (472)
+..+++|++|++++|.+++..+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 444444444444444444333333444444444444444444444444444444444444443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-41 Score=337.77 Aligned_cols=393 Identities=21% Similarity=0.179 Sum_probs=250.3
Q ss_pred cCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCc
Q 012044 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (472)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 134 (472)
.++++++|++++|.+.+..+..++++++|++|++++| .+....+..|..+++|++|++++|.+ ....+..++++++|+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i-~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLE 132 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCC-SCGGGSCCTTCTTCC
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCc-ccCCcchhccCCccc
Confidence 4566777777777666665666667777777777765 55555566666667777777776664 233344566666666
Q ss_pred EEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCC-------------------------------
Q 012044 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK------------------------------- 183 (472)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~------------------------------- 183 (472)
+|++++|.........+..+++|++|+++++. +....+..+..+++|+
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 66666665433232333335666666665532 2222223333333333
Q ss_pred ----------------------------------------------EEEeeccccChhhhhhccCCCCCcEEEecCCCCC
Q 012044 184 ----------------------------------------------SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (472)
Q Consensus 184 ----------------------------------------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 217 (472)
.++++++.++...+..|+.+++|++|++++|.+.
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 3333444444333444667778888888888776
Q ss_pred hhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHH-HHhcCCCCccEEecccCCCCHHH--HH
Q 012044 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEG--LV 294 (472)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~ 294 (472)
. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.... +.
T Consensus 292 ~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 E-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp C-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred C-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 4 34566777888888888888777666677777888888888776653332 23667777888888777766543 34
Q ss_pred HhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHH-hhcCCCCCCEEEcCCCCCChHHHHHHhCCCC
Q 012044 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (472)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 373 (472)
.+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 566777777777777776666666666777777777777766544332 3556677777777777776655555666777
Q ss_pred CCEEeCCCCccChhH---HHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccChhHHhhccCCccccccc
Q 012044 374 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 444 (472)
Q Consensus 374 L~~L~l~~~~l~~~~---~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 444 (472)
|++|++++|.+.+.. +..+..+++|++|++++|.++.. .+++|+.|++++|++.+..+..+.+++.| .|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 777777777766521 23456677777777777766654 45677777777777777666667677777 777
Q ss_pred cccccCCH
Q 012044 445 LESCKVTA 452 (472)
Q Consensus 445 l~~~~l~~ 452 (472)
+++|+++.
T Consensus 530 L~~N~l~~ 537 (606)
T 3t6q_A 530 LASNHISI 537 (606)
T ss_dssp CCSSCCCC
T ss_pred CcCCcccc
Confidence 77776664
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9e-40 Score=326.43 Aligned_cols=389 Identities=21% Similarity=0.194 Sum_probs=236.5
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+++..+..++++++|++|++++| .+....+..|..+++|++|++++|.+ ....|..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcc-cccChhhcCCcccCCEE
Confidence 67888888888888776677888888888888887 67777777788888888888888874 44556778888888888
Q ss_pred eccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCC------------
Q 012044 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ------------ 204 (472)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~------------ 204 (472)
++++|......+..+..+++|++|++++|.......+..+..+++|++|++++|.++...+..++.++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 88887655444466788888888888886544334466778888888888888877654444333222
Q ss_pred ---------------CCcEEEecCCCCCh-hHHHhh--------------------------------------------
Q 012044 205 ---------------KLTLLNLEGCPVTA-ACLDSL-------------------------------------------- 224 (472)
Q Consensus 205 ---------------~L~~L~l~~~~~~~-~~~~~l-------------------------------------------- 224 (472)
+|++|++++|.+.. ..+..+
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 45555555554431 111111
Q ss_pred ------------hcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHH--------------------Hh
Q 012044 225 ------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV--------------------HL 272 (472)
Q Consensus 225 ------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------------------~l 272 (472)
..+++|+.|+++++.+.... .+..+++|+.|++++|.+. ..+. .+
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhh
Confidence 22233333333333332211 2333444555555554442 1221 12
Q ss_pred cCCCCccEEecccCCCCHHH--HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHH-HhhcCCCC
Q 012044 273 KGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSS 349 (472)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 349 (472)
..+++|++|++++|.+.... +..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+..+ ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 23344444444444433221 233444555555555555443322 334455556666666655544433 34555666
Q ss_pred CCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChh-HHHHhhcCCCCcEEEecCCccccc------ccccCceeecc
Q 012044 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVS 422 (472)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~ 422 (472)
|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++.. .+++|+.|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 66666666666654455566666677777777666652 455566667777777777766554 45677777777
Q ss_pred CCccChhHHhhccCCccccccccccccCC
Q 012044 423 NSRITSAGLRHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 423 ~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 451 (472)
+|++.+..|..+..+++|++|++++|+++
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 77777766666777777777777777766
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-40 Score=332.11 Aligned_cols=398 Identities=16% Similarity=0.160 Sum_probs=320.8
Q ss_pred hHH---HHHHHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccc-----------------------------
Q 012044 46 DKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ----------------------------- 93 (472)
Q Consensus 46 ~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------------------------- 93 (472)
+.| .++.|....+++.|+|+++.+.|.+|..++++++|++|++++|..
T Consensus 67 c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~ 146 (636)
T 4eco_A 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146 (636)
T ss_dssp GGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHH
T ss_pred ccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHH
Confidence 456 555554447999999999999999999999999999999998731
Q ss_pred ------------------------------------------------cChhhHHHhhCCCCCCEEecCCCCCCCHH---
Q 012044 94 ------------------------------------------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQ--- 122 (472)
Q Consensus 94 ------------------------------------------------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--- 122 (472)
++. .|..+.++++|++|+|++|.+ ...
T Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l-~~~~~~ 224 (636)
T 4eco_A 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF-VAENIC 224 (636)
T ss_dssp HHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC-CGGGBS
T ss_pred HhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc-cccccc
Confidence 122 345678899999999999985 443
Q ss_pred --------------HHHHHh--CCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCc-cccccccCC------
Q 012044 123 --------------GMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGL------ 179 (472)
Q Consensus 123 --------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~~------ 179 (472)
+|..+. ++++|++|++++|......+..+..+++|++|++++|..+++ ..+..+..+
T Consensus 225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l 304 (636)
T 4eco_A 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304 (636)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence 788888 999999999999887777788899999999999999764555 555656554
Q ss_pred CCCCEEEeeccccChhhhh--hccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCC-CcE
Q 012044 180 TNLKSLQISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKV 256 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~ 256 (472)
++|+.|++++|.++ ..+. .++++++|++|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.
T Consensus 305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence 89999999999988 4555 78999999999999999885555 7888999999999999887 44556888888 999
Q ss_pred EEccccccChhHHHHhcCC--CCccEEecccCCCCHHHHHHhh-------CCCCCCEEecCCCccCchhHHHhhCCCCCC
Q 012044 257 LNLGFNEITDECLVHLKGL--TNLESLNLDSCGIGDEGLVNLT-------GLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (472)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (472)
|++++|.++ ..+..+... ++|++|++++|.+.+..+..+. .+++|+.|++++|.+...+...+..+++|+
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 999999888 455555554 4899999999998876666666 677999999999999877667777899999
Q ss_pred EeeecCCCCChhHHHhhcCC-------CCCCEEEcCCCCCChHHHHHHh--CCCCCCEEeCCCCccChhHHHHhhcCCCC
Q 012044 328 SINLSFTGISDGSLRKLAGL-------SSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (472)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 398 (472)
+|++++|.++......+... ++|++|++++|.++.. +..+. .+++|+.|++++|.+.+ .|..+..+++|
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 99999998885433333322 3899999999999853 45555 89999999999999998 67778889999
Q ss_pred cEEEecC------Cccccc------ccccCceeeccCCccChhHHhhccCCccccccccccccCCHHH
Q 012044 399 RSLEICG------GGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 454 (472)
Q Consensus 399 ~~L~l~~------~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 454 (472)
++|++++ |.+... .+++|+.|++++|.+.. .|..+. ++|+.|++++|++....
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCcccc
Confidence 9999954 554433 68999999999999944 455544 79999999999877544
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-38 Score=310.03 Aligned_cols=386 Identities=21% Similarity=0.193 Sum_probs=269.4
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+++..+..++++++|++|++++| .+....+..|..+++|++|++++|.+ ....+..|+++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEE
Confidence 57888888888888776777888888888888887 67777777788888888888888875 45556678888888888
Q ss_pred eccCccccc-ccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
++++|.... ..+..+..+++|++|++++|..........+..+++|++|++++|.++...+..++.+++|++|++.++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 888876443 2345677888888888888664554445667788888888888888777666677777777777777666
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCChh---------------------------HHHH----hhcC-------------
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLSDD---------------------------GCEK----FSKI------------- 251 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------------------------~~~~----l~~~------------- 251 (472)
+.......+..+++|+.|++++|.+... .+.. +..+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 5544333334566666666666554431 1111 1112
Q ss_pred ----------------------------------------------CCCcEEEccccccChhHHHHhcCCCCccEEeccc
Q 012044 252 ----------------------------------------------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 252 ----------------------------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (472)
++|+.++++++.+.......+..+++|++|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 2344444444443322112224567777777777
Q ss_pred CCCCHHHHHH---hhCCCCCCEEecCCCccCchhH--HHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCC
Q 012044 286 CGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (472)
Q Consensus 286 ~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (472)
|.+.+..+.. ++.+++|+.|++++|.+..... ..+..+++|++|++++|.++. .+..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCc
Confidence 7777654332 4566777888887777765432 446677778888887777764 344455667788888887776
Q ss_pred ChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc----ccccCceeeccCCccChhHHhhccC
Q 012044 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GLTGLVSLNVSNSRITSAGLRHLKP 436 (472)
Q Consensus 361 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~l~~ 436 (472)
+... .. ..++|+.|++++|++++.. ..+++|++|++++|.++.. .+++|+.|++++|++.+..+..+..
T Consensus 423 ~~l~-~~--~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 423 RVVK-TC--IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp SCCC-TT--SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred cccc-ch--hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhc
Confidence 6421 11 1257888888888777642 5788999999999988765 5789999999999999887777889
Q ss_pred CccccccccccccCCH
Q 012044 437 LKNLRSLTLESCKVTA 452 (472)
Q Consensus 437 ~~~L~~L~l~~~~l~~ 452 (472)
+++|+.|++++|++..
T Consensus 496 l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CcccCEEEecCCCccC
Confidence 9999999999998764
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.6e-39 Score=323.21 Aligned_cols=393 Identities=21% Similarity=0.213 Sum_probs=192.5
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
++++++|+++++.+.+..+..++++++|++|++++| .+...+...|..+++|++|++++|.+ ....+..|+++++|++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCE
Confidence 345555555555554444444455555555555554 34444333444555555555555443 2222234445555555
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCcccccccc--CCCCCCEEEeeccccChhhhhhccCC----------
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGL---------- 203 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~---------- 203 (472)
|++++|......+..+..+++|++|++++|. +....+..+. .+++|+.|++++|.++...+..+..+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 5555544333333334445555555555432 2222222221 33455555555554443333333222
Q ss_pred -----------------CCCcEEEecCCCCChhHHHhhhcCC--CCcEEeccCCcCChhHHHHhhcCCCCcEEEcccccc
Q 012044 204 -----------------QKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (472)
Q Consensus 204 -----------------~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (472)
++|++|+++++.+.+..+..+..++ +|+.|++++|.+....+..|+.+++|++|++++|.+
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 3344444444444433334444443 377777777776665556667777777777777766
Q ss_pred ChhHHHHhcCCCCccEEecccCCCCHHH---------HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCC-
Q 012044 265 TDECLVHLKGLTNLESLNLDSCGIGDEG---------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT- 334 (472)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~- 334 (472)
.+..+..+..+++|++|++.++...... ...+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 6555555556666666666544221100 012445566666666666655554444555555555555443
Q ss_pred ---------------------------CCChhHHHhhcCCCCCCEEEcCCCCCChHHH-HHHhCCCCCCEEeCCCCccCh
Q 012044 335 ---------------------------GISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITD 386 (472)
Q Consensus 335 ---------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~ 386 (472)
.++...+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 3333333344455566666666665543211 334555555555555555444
Q ss_pred hHHHHhhcCCCCcEEEecCCccccc--------ccccCceeeccCCccChhHHhhccCCccccccccccccCC
Q 012044 387 SGAAYLRNFKNLRSLEICGGGLTDA--------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 387 ~~~~~l~~~~~L~~L~l~~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 451 (472)
..+..+..+++|+.|++++|.+... .+++|+.|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 3333344444444444444433211 3445555555555555544444455555555555555544
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-39 Score=325.07 Aligned_cols=427 Identities=21% Similarity=0.231 Sum_probs=232.4
Q ss_pred cCHHHHHHhcCC-ccceEecCCCC--CCChHHHHHHHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccCh
Q 012044 20 LTEVSLEAFRDC-ALQDLCLGQYP--GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96 (472)
Q Consensus 20 ~~~~~~~~~~~~-~~~~l~l~~~~--~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 96 (472)
+.......|..+ .++.+.+..+. ++... ....++++++|+++++.+++..+..++.+++|++|++++| .+..
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~ 111 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQK 111 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCC
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCc
Confidence 333344445555 47888876543 22222 2345789999999999998665567899999999999998 6777
Q ss_pred hhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCccccccccccc--ccCCCCceEeecCCCCCCccccc
Q 012044 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMK 174 (472)
Q Consensus 97 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~ 174 (472)
..+..|..+++|++|++++|.+ ....+..+.++++|++|++++|......+..+ ..+++|++|++++|. +....+.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 189 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPG 189 (680)
T ss_dssp CCSCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTT
T ss_pred cChhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChh
Confidence 7777899999999999999975 44456678899999999999986544333333 356899999999864 3322222
Q ss_pred ccc---------------------------------------------------CC--CCCCEEEeeccccChhhhhhcc
Q 012044 175 PLS---------------------------------------------------GL--TNLKSLQISCSKVTDSGIAYLK 201 (472)
Q Consensus 175 ~l~---------------------------------------------------~~--~~L~~L~l~~~~~~~~~~~~l~ 201 (472)
.+. .+ ++|+.|++++|.++...+..++
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence 221 11 2255555555555554445555
Q ss_pred CCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChh---------HHHHhhcCCCCcEEEccccccChhHHHHh
Q 012044 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD---------GCEKFSKIGSLKVLNLGFNEITDECLVHL 272 (472)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 272 (472)
.+++|++|++++|.+....+..+..+++|+.|+++++..... ....|..+++|+.|++++|.+.+..+..+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence 666666666666655544344444444444444443221100 00123344555555555555444333334
Q ss_pred cCCCCccEEecccC----------------------------CCCHHHHHHhhCCCCCCEEecCCCccCch-hHHHhhCC
Q 012044 273 KGLTNLESLNLDSC----------------------------GIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGL 323 (472)
Q Consensus 273 ~~~~~L~~L~l~~~----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~ 323 (472)
..+++|++|++++| .+....+..+..+++|+.|++++|.+... ....+..+
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 44444444444433 23222223344455555555555554322 12334445
Q ss_pred CCCCEeeecCCCCChhHHHhh--------------------------cCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEE
Q 012044 324 TNLESINLSFTGISDGSLRKL--------------------------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377 (472)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 377 (472)
++|++|++++|.+....+..+ ..+++|++|++++|.++...+..+..+++|+.|
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 509 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence 555555555554433322233 333444444444444443333334444444444
Q ss_pred eCCCCccChhHHH--------HhhcCCCCcEEEecCCccccc------ccccCceeeccCCccChhHHhhccCCcccccc
Q 012044 378 DLFGARITDSGAA--------YLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 443 (472)
Q Consensus 378 ~l~~~~l~~~~~~--------~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 443 (472)
++++|.+.+.... .+..+++|++|++++|.++.. .+++|+.|++++|+++...+..|..+++|+.|
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 4444444432111 133444455555544444432 34455555555555554444444555555555
Q ss_pred ccccccCCHH
Q 012044 444 TLESCKVTAN 453 (472)
Q Consensus 444 ~l~~~~l~~~ 453 (472)
++++|+++..
T Consensus 590 ~L~~N~l~~~ 599 (680)
T 1ziw_A 590 NLQKNLITSV 599 (680)
T ss_dssp ECTTSCCCBC
T ss_pred ECCCCcCCcc
Confidence 5555554443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=323.80 Aligned_cols=386 Identities=22% Similarity=0.236 Sum_probs=218.0
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+++..+..++.+++|++|++++| .+....+..|..+++|++|++++|.+ ....+..|.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcC-CccCHhhhcCccccccc
Confidence 46888888888887766667788888888888887 57777677778888888888888874 34445677888888888
Q ss_pred eccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCC----cEEEec
Q 012044 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNLE 212 (472)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~ 212 (472)
++++|.........+..+++|++|++++|.......+..+.++++|+.|++++|.++...+..++.+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 8888754433334577888888888887543332346667778888888888887766555555555555 566666
Q ss_pred CCCCChhHHHhh--------------------------------------------------------------------
Q 012044 213 GCPVTAACLDSL-------------------------------------------------------------------- 224 (472)
Q Consensus 213 ~~~~~~~~~~~l-------------------------------------------------------------------- 224 (472)
+|.+....+..+
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 665544322222
Q ss_pred -------------hcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHH
Q 012044 225 -------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (472)
Q Consensus 225 -------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (472)
..+++|+.|+++++.+.. .+..+..+ +|+.|++++|.+... +. ..+++|++|++.+|.+...
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCccccc
Confidence 233444444444444332 12223333 455555555544311 11 2233444444444332211
Q ss_pred HHHHhhCCCCCCEEecCCCccCchh--HHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHH-HHH
Q 012044 292 GLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AAL 368 (472)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l 368 (472)
.+ ...+++|+.|++++|.+.... +..+..+++|++|++++|.+....+. +..+++|++|++++|.+....+ ..+
T Consensus 341 ~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 341 FS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CC--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred cc--cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 11 134455666666655554432 34445555666666665555443222 4455555555555554443222 234
Q ss_pred hCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-------ccccCceeeccCCccChhHHhhccCCcccc
Q 012044 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-------GLTGLVSLNVSNSRITSAGLRHLKPLKNLR 441 (472)
Q Consensus 369 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 441 (472)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+++|+.|++++|++.+..+..+..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 4455555555555555554444455555555555555554421 345555555555555554444555555555
Q ss_pred ccccccccCCH
Q 012044 442 SLTLESCKVTA 452 (472)
Q Consensus 442 ~L~l~~~~l~~ 452 (472)
+|++++|+++.
T Consensus 498 ~L~l~~n~l~~ 508 (570)
T 2z63_A 498 VLNMASNQLKS 508 (570)
T ss_dssp EEECCSSCCSC
T ss_pred EEeCCCCcCCC
Confidence 55555555443
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=334.67 Aligned_cols=391 Identities=21% Similarity=0.197 Sum_probs=235.3
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
.+++++|+|++|.+++..+..++++++|++|++++|.......+..|.++++|++|+|++|.+ ....|..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccCE
Confidence 468999999999998877788899999999999998555566677889999999999999885 4556788899999999
Q ss_pred EeccCccccccccc--ccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCC--CCCcEEEe
Q 012044 136 LDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLNL 211 (472)
Q Consensus 136 L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l 211 (472)
|++++|......+. .+..+++|++|++++|..........+..+++|+.|++++|.++...+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 99999865543343 378899999999998664443334568889999999999888766544444433 44555555
Q ss_pred cCCCCChhHHHhhhcC----------------------------------------------------------------
Q 012044 212 EGCPVTAACLDSLSAL---------------------------------------------------------------- 227 (472)
Q Consensus 212 ~~~~~~~~~~~~l~~~---------------------------------------------------------------- 227 (472)
++|.+....+..+..+
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 5444433222222222
Q ss_pred ----CCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCC
Q 012044 228 ----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (472)
Q Consensus 228 ----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (472)
++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 3444455544444443334444455555555555555444444445555555555555554433333444555555
Q ss_pred EEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCC--------------------ChH
Q 012044 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI--------------------TDT 363 (472)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------~~~ 363 (472)
.|++++|.+.......+..+++|+.|++++|.++.. ..+++|+++++++|.+ ++.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 555555555444444444555555555555544321 1123333333333322 211
Q ss_pred -HHHHHhCCCCCCEEeCCCCccChhHHH-HhhcCCCCcEEEecCCccccc-----------ccccCceeeccCCccChhH
Q 012044 364 -GLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDA-----------GLTGLVSLNVSNSRITSAG 430 (472)
Q Consensus 364 -~~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~~~~~~~-----------~~~~L~~L~l~~n~~~~~~ 430 (472)
....+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.++.. .+++|+.|++++|.+.+..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 112234555666666666655543221 223355566666666555411 4566777777777777666
Q ss_pred HhhccCCccccccccccccCCH
Q 012044 431 LRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 431 ~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
+..+..+++|+.|++++|.++.
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSS
T ss_pred hhHccchhhhheeECCCCCCCc
Confidence 6666777777777777777654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-39 Score=321.41 Aligned_cols=389 Identities=21% Similarity=0.191 Sum_probs=281.4
Q ss_pred hcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
..++++++|+++++.+++..+..++++++|++|++++| .+....+..|..+++|++|++++|.+ ....+..++++++|
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITL 130 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCC-CCSSSSCCTTCTTC
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCcc-ccccccccCCCCCC
Confidence 34667777777777777666666777777777777776 56666667777777777777777764 22333456777777
Q ss_pred cEEeccCccccc-ccccccccCCCCceEeecCCCCCCcccccccc---------------------------CCCCCCEE
Q 012044 134 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---------------------------GLTNLKSL 185 (472)
Q Consensus 134 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~---------------------------~~~~L~~L 185 (472)
++|++++|.... ..+..+..+++|++|++++|. +....+..+. ...+|+.|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 777777765443 235567777777777777643 2222222111 12267777
Q ss_pred EeeccccChh-hh--------------------------------------------------------hhccCCC----
Q 012044 186 QISCSKVTDS-GI--------------------------------------------------------AYLKGLQ---- 204 (472)
Q Consensus 186 ~l~~~~~~~~-~~--------------------------------------------------------~~l~~~~---- 204 (472)
++++|.+... .+ ..+..++
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 7777654310 00 0022233
Q ss_pred ------------------CCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccCh
Q 012044 205 ------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266 (472)
Q Consensus 205 ------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 266 (472)
+|++|++.+|.+.. .+ .+ .+++|+.|++++|...... .+..+++|++|++++|.+.+
T Consensus 290 L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred EEecCccchhhhhccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 44444454444422 12 23 5555666666555332221 45677889999999988775
Q ss_pred h--HHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhH-HHhhCCCCCCEeeecCCCCChhHHHh
Q 012044 267 E--CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRK 343 (472)
Q Consensus 267 ~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (472)
. .+..+..+++|++|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred CcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 4 2567889999999999999876533 567788999999999998877655 57789999999999999998877888
Q ss_pred hcCCCCCCEEEcCCCCCChH-HHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccC
Q 012044 344 LAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGL 416 (472)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L 416 (472)
+..+++|++|++++|.+.+. .+..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+++|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 88999999999999998873 456678899999999999999998888899999999999999998876 57899
Q ss_pred ceeeccCCccChhHHhhccCCc-cccccccccccCCH
Q 012044 417 VSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA 452 (472)
Q Consensus 417 ~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~~ 452 (472)
+.|++++|++... |..+..++ +|+.|++++|++..
T Consensus 524 ~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 524 STLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCC
T ss_pred CEEECCCCcCccc-CHhHhhhcccCcEEEccCCCccc
Confidence 9999999999854 44577887 59999999999774
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-39 Score=327.45 Aligned_cols=395 Identities=16% Similarity=0.150 Sum_probs=308.8
Q ss_pred HHHHHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeec-CCccccChh------------------------------
Q 012044 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDG------------------------------ 97 (472)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~------------------------------ 97 (472)
.++.|....+++.|+|+++.+.|.+|..++++++|++|++ ++| .+...
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 3444444478999999999999999999999999999999 544 22111
Q ss_pred ----------------------------------------------hHHHhhCCCCCCEEecCCCCCCCH----------
Q 012044 98 ----------------------------------------------GLEHLRGLSNLTSLSFRRNNAITA---------- 121 (472)
Q Consensus 98 ----------------------------------------------~~~~~~~~~~L~~L~L~~~~~~~~---------- 121 (472)
.|..|.++++|++|+|++|.+...
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 345678899999999999985331
Q ss_pred ------HHHHHHh--CCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCc-ccccccc-------CCCCCCEE
Q 012044 122 ------QGMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLS-------GLTNLKSL 185 (472)
Q Consensus 122 ------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~-------~~~~L~~L 185 (472)
.+|..++ ++++|++|++++|......+..+..+++|++|++++|..+.+ ..+..+. .+++|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 3677766 999999999999887777788899999999999998764554 3444333 45699999
Q ss_pred EeeccccChhhhh--hccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCC-CcEEEcccc
Q 012044 186 QISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFN 262 (472)
Q Consensus 186 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 262 (472)
++++|.++ ..+. .++++++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 99999988 4455 7899999999999999888 444 7888999999999999988 55566888888 999999999
Q ss_pred ccChhHHHHhcCCC--CccEEecccCCCCHHHHH---Hhh--CCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCC
Q 012044 263 EITDECLVHLKGLT--NLESLNLDSCGIGDEGLV---NLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (472)
Q Consensus 263 ~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (472)
.+. ..+..+...+ +|+.|++++|.+.+..+. .+. ..++|+.|++++|.+...+...+..+++|+.|++++|.
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 887 4555555554 499999999988653321 111 33589999999999987666666789999999999998
Q ss_pred CChhHHHhhc-------CCCCCCEEEcCCCCCChHHHHHHh--CCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecC-
Q 012044 336 ISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG- 405 (472)
Q Consensus 336 ~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~- 405 (472)
+.......+. ++++|++|++++|.++.. +..+. .+++|+.|++++|.+.+ .|..+..+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 8753333222 223899999999999843 45565 88999999999999998 577788999999999976
Q ss_pred -----Cccccc------ccccCceeeccCCccChhHHhhccCCccccccccccccCCHHH
Q 012044 406 -----GGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 454 (472)
Q Consensus 406 -----~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 454 (472)
|.+... .+++|+.|++++|.+ +..|..+. ++|+.|+|++|++....
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 554433 689999999999999 44555553 69999999999976544
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.7e-37 Score=299.46 Aligned_cols=383 Identities=14% Similarity=0.135 Sum_probs=226.1
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+.+..+..++++++|++|++++| .+....+..|..+++|++|++++|.+. .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEE
Confidence 68899999999888877788889999999999987 678777888888999999999998753 33433 78899999
Q ss_pred eccCccccc-ccccccccCCCCceEeecCCCCCCccccccccCCCCC--CEEEeecccc--Chhhhhhcc----------
Q 012044 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK---------- 201 (472)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~---------- 201 (472)
++++|.... ..+..+..+++|++|+++++. +.. ..+..+++| +.|++++|.+ ....+..+.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999886554 245678889999999998854 332 345566666 8888888876 333333333
Q ss_pred ----------------CCCCCcEEEecCCC-------CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhh---cCCCCc
Q 012044 202 ----------------GLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK 255 (472)
Q Consensus 202 ----------------~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~ 255 (472)
++++|+.+++++|. +.+.. ..+..+++|+.|++.++.+.......+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 35667777777664 33332 3667778888888887776654332221 245788
Q ss_pred EEEccccccChhHHHHh-----cCCCCccEEecccCCCCHH--HHHHh----------------------hCCCCCCEEe
Q 012044 256 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDE--GLVNL----------------------TGLCNLKCLE 306 (472)
Q Consensus 256 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~--~~~~~----------------------~~~~~L~~L~ 306 (472)
.|++++|.+.+..+..+ ..+++|+.+++.++.+... ....+ ..+++|+.|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 88888877765555555 6667777777766655111 11111 2334444444
Q ss_pred cCCCccCchhHHHhhCCCCCCEeeecCCCCCh--hHHHhhcCCCCCCEEEcCCCCCCh-HHHHHHhCCCCCCEEeCCCCc
Q 012044 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 383 (472)
+++|.+....+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+ .....+..+++|++|++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 44444444333344444444444444444443 222334444444444444444443 211123334444444444444
Q ss_pred cChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccChhHHhhccCCccccccccccccCC
Q 012044 384 ITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 384 l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 451 (472)
+++..+..+. ++|++|++++|.++.. .+++|+.|++++|++.......+..+++|++|++++|+++
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 4433322211 3455555555544432 3445555555555554332223444555555555555544
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=312.52 Aligned_cols=388 Identities=20% Similarity=0.192 Sum_probs=299.5
Q ss_pred hcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
..++++++|++++|.+++..+..++++++|++|++++| .+....+..|..+++|++|++++|.+. ...+..++++++|
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 126 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTL 126 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTC
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccc-cCCCccccccccc
Confidence 45778888888888888766677888888888888887 577777777888888888888888652 2222347788888
Q ss_pred cEEeccCccccc-ccccccccCCCCceEeecCCCCCCccccccccCCCCC----CEEEeeccccCh--------------
Q 012044 134 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQISCSKVTD-------------- 194 (472)
Q Consensus 134 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~-------------- 194 (472)
++|++++|.... ..+..+..+++|++|++++|. +....+..+..+++| +.+++++|.+..
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 888888876444 235667788888888888754 333333333333333 344443332221
Q ss_pred -------------------------------------------------------------------hhhhhccCCCCCc
Q 012044 195 -------------------------------------------------------------------SGIAYLKGLQKLT 207 (472)
Q Consensus 195 -------------------------------------------------------------------~~~~~l~~~~~L~ 207 (472)
..+..+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 1123345578899
Q ss_pred EEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCC
Q 012044 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287 (472)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (472)
+|++.++.+.. .+..+..+ +|+.|++++|.+..... ..+++|+.|+++++......+. ..+++|++|++++|.
T Consensus 286 ~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 286 SFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp EEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred EEEecCccchh-hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 99999887764 34566677 99999999999874332 5789999999999987654332 678999999999998
Q ss_pred CCHHH--HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHH-HhhcCCCCCCEEEcCCCCCChHH
Q 012044 288 IGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTG 364 (472)
Q Consensus 288 ~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~ 364 (472)
+.... +..+..+++|+.|++++|.+...... +..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 87543 45678899999999999988765544 7889999999999998876544 45778999999999999988776
Q ss_pred HHHHhCCCCCCEEeCCCCccC-hhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccChhHHhhccCC
Q 012044 365 LAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPL 437 (472)
Q Consensus 365 ~~~l~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~ 437 (472)
+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+++. .+++|+.|++++|++.+..+..+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 777888999999999999987 45677788999999999999998876 67899999999999999877888999
Q ss_pred ccccccccccccCCH
Q 012044 438 KNLRSLTLESCKVTA 452 (472)
Q Consensus 438 ~~L~~L~l~~~~l~~ 452 (472)
++|+.|++++|+++.
T Consensus 518 ~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 518 TSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cCCcEEEecCCcccC
Confidence 999999999998764
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-36 Score=298.10 Aligned_cols=401 Identities=19% Similarity=0.157 Sum_probs=273.8
Q ss_pred cEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
...+.+++.++ .+|..+ .++|++|++++| .++...+..|..+++|++|++++|.+ ....+..|.++++|++|+++
T Consensus 8 ~~c~~~~~~l~-~ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp SEEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCccc-cccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECC
Confidence 34566666665 344333 379999999998 68888788899999999999999985 45566789999999999999
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccc-cChhhhhhccCCCCCcEEEecCCCCCh
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~ 218 (472)
+|......+..+..+++|++|++++|.......+..+..+++|++|++++|. +....+..+.++++|++|++++|.+..
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 9875555555689999999999999764432345678899999999999997 555545678999999999999999988
Q ss_pred hHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhH---HHHhcCCCCccEEecccCCCCHHHHHH
Q 012044 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEGLVN 295 (472)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (472)
..+..+..+++|+.|+++++.........+..+++|++|++++|.+.+.. ......+++|+.|++.++.+.+..+..
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 77888999999999999999887665555567899999999998776521 011123445555555554443322221
Q ss_pred h---------------------------------------------------------------hCCCCCCEEecCCCcc
Q 012044 296 L---------------------------------------------------------------TGLCNLKCLELSDTQV 312 (472)
Q Consensus 296 ~---------------------------------------------------------------~~~~~L~~L~l~~~~~ 312 (472)
+ ...++|+.|++++|.+
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 1 1123455555555555
Q ss_pred CchhHHHhhCCCCCCEeeecCCCCChhHHHh---hcCCCCCCEEEcCCCCCChHHH--HHHhCCCCCCEEeCCCCccChh
Q 012044 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~ 387 (472)
...+...+..+++|++|++++|.+.+..+.. ++.+++|++|++++|.+++... ..+..+++|++|++++|.+..
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 401 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP- 401 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-
Confidence 5444444456778888888888777654332 4567788888888887776532 446777888888888887774
Q ss_pred HHHHhhcCCCCcEEEecCCccccc-----------------------ccccCceeeccCCccChhHHhhccCCccccccc
Q 012044 388 GAAYLRNFKNLRSLEICGGGLTDA-----------------------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 444 (472)
Q Consensus 388 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 444 (472)
.|..+..+++|++|++++|.++.. .+++|+.|++++|++... |. ...+++|+.|+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~ 479 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMK 479 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEE
T ss_pred CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcC-CC-cccCccCCEEe
Confidence 344455666666666666665433 345555555555555532 11 23456666666
Q ss_pred cccccCCHHHHHHhhccCCCCceecC
Q 012044 445 LESCKVTANDIKRLQSRDLPNLVSFR 470 (472)
Q Consensus 445 l~~~~l~~~~~~~l~~~~~~~l~~l~ 470 (472)
+++|+++......+ ..+++|+.+.
T Consensus 480 Ls~N~l~~~~~~~~--~~l~~L~~L~ 503 (549)
T 2z81_A 480 ISRNQLKSVPDGIF--DRLTSLQKIW 503 (549)
T ss_dssp CCSSCCCCCCTTGG--GGCTTCCEEE
T ss_pred cCCCccCCcCHHHH--hcCcccCEEE
Confidence 66666554322222 2355555543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=297.03 Aligned_cols=396 Identities=17% Similarity=0.131 Sum_probs=300.4
Q ss_pred cEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
++|+++++.++. +|..+. ++|++|++++| .+....+..|..+++|++|++++|.+ ....|..|+++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecC
Confidence 579999999984 554444 89999999998 78888888999999999999999985 45567889999999999999
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCC--cEEEecCCCC-
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV- 216 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~- 216 (472)
+|... ..+.. .+++|++|++++|.......+..++.+++|++|++++|.++.. .+..+++| ++|++.+|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccc
Confidence 98644 44444 8999999999996644434567899999999999999998763 45666777 9999999887
Q ss_pred -ChhHHHhhhc--------------------------CCCCcEEeccCCc-------CChhHHHHhhcCCCCcEEEcccc
Q 012044 217 -TAACLDSLSA--------------------------LGSLFYLNLNRCQ-------LSDDGCEKFSKIGSLKVLNLGFN 262 (472)
Q Consensus 217 -~~~~~~~l~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~ 262 (472)
....+..+.. +++|+.+++++|. +.+.. ..++.+++|+.|+++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhcccccc
Confidence 4433444433 5677777777765 33333 36778888999988888
Q ss_pred ccChhHHHHh---cCCCCccEEecccCCCCHHHHHHh-----hCCCCCCEEecCCCccCchh---HHH------------
Q 012044 263 EITDECLVHL---KGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLELSDTQVGSSG---LRH------------ 319 (472)
Q Consensus 263 ~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~------------ 319 (472)
.+.+..+..+ ...++|++|++++|.+.+..+..+ ..+++|+.++++++.+ ..+ ...
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence 7765433322 124689999998887654434444 5556666666655544 111 111
Q ss_pred ----------hhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCCh--HHHHHHhCCCCCCEEeCCCCccCh-
Q 012044 320 ----------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--TGLAALTSLTGLTHLDLFGARITD- 386 (472)
Q Consensus 320 ----------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~- 386 (472)
...+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 1577899999999999988778888899999999999999997 345678999999999999999998
Q ss_pred hHHHHhhcCCCCcEEEecCCccccc---cc-ccCceeeccCCccChhHHhhccCCccccccccccccCCHHHHHHhhccC
Q 012044 387 SGAAYLRNFKNLRSLEICGGGLTDA---GL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 462 (472)
Q Consensus 387 ~~~~~l~~~~~L~~L~l~~~~~~~~---~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 462 (472)
.+...+..+++|++|++++|.+++. .+ ++|+.|++++|++.. .|..+..+++|++|++++|+++..... ....
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDG--IFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTT--TTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHH--Hhcc
Confidence 4444577889999999999998765 23 799999999999984 455566999999999999998853322 1235
Q ss_pred CCCceecCC
Q 012044 463 LPNLVSFRP 471 (472)
Q Consensus 463 ~~~l~~l~~ 471 (472)
+++|+.+.+
T Consensus 467 l~~L~~L~l 475 (520)
T 2z7x_B 467 LTSLQKIWL 475 (520)
T ss_dssp CTTCCEEEC
T ss_pred CCcccEEEC
Confidence 777777654
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=316.16 Aligned_cols=403 Identities=18% Similarity=0.190 Sum_probs=281.7
Q ss_pred cEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
+..+.++++++. +|. -.+++++|++++| .++...+..|..+++|++|++++|.......+..|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 356677777764 343 4579999999997 78888888899999999999999966555557889999999999999
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCcccc--ccccCCCCCCEEEeeccccChhhh-hhccCCCCCcEEEecCCCC
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPV 216 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 216 (472)
+|......+..+..+++|++|++++|. +.+..+ ..+..+++|++|++++|.++...+ ..|+++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 987666667889999999999999965 433223 348899999999999999876544 5789999999999999988
Q ss_pred ChhHHHhhhcC--CCCcEEeccCCcCChhHHHHhhcCCC------CcEEEccccccChhHHHHh----------------
Q 012044 217 TAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGS------LKVLNLGFNEITDECLVHL---------------- 272 (472)
Q Consensus 217 ~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l---------------- 272 (472)
....+..+..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+.+..+..+
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 77666666665 89999999988876654444444333 7777777775443222111
Q ss_pred --------------------cC--CCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEee
Q 012044 273 --------------------KG--LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (472)
Q Consensus 273 --------------------~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (472)
.+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 11 24677777777666554444556667777777777766666555666667777777
Q ss_pred ecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChh-----------------------
Q 012044 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS----------------------- 387 (472)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~----------------------- 387 (472)
+++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~ 400 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc
Confidence 777766655555566666777777777666554444455566666666666654431
Q ss_pred -----------------HHHHhhcCCCCcEEEecCCccccc-------ccccCceeeccCCccCh-----hHHhhccCCc
Q 012044 388 -----------------GAAYLRNFKNLRSLEICGGGLTDA-------GLTGLVSLNVSNSRITS-----AGLRHLKPLK 438 (472)
Q Consensus 388 -----------------~~~~l~~~~~L~~L~l~~~~~~~~-------~~~~L~~L~l~~n~~~~-----~~~~~l~~~~ 438 (472)
.+..+..+++|+.|++++|.++.. .+++|+.|++++|.+.. ..+..+..++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcc
Confidence 122334677777777777777643 45777888888877753 2234466778
Q ss_pred cccccccccccCCHHHHHHhhccCCCCceecC
Q 012044 439 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 470 (472)
Q Consensus 439 ~L~~L~l~~~~l~~~~~~~l~~~~~~~l~~l~ 470 (472)
+|+.|++++|.++......+ .++++|+.|.
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~ 510 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVF--SHLTALRGLS 510 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSS--SSCCSCSEEE
T ss_pred cccEEECCCCcccccChhHc--cchhhhheeE
Confidence 88888888887664332222 3456666553
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-37 Score=305.86 Aligned_cols=368 Identities=14% Similarity=0.108 Sum_probs=297.0
Q ss_pred HHHHhhCCCCCCeeecCCccccChh-----------------hHHHhh--CCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 73 GLIHLKDCSNLQSLDFNFCIQISDG-----------------GLEHLR--GLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 73 ~~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
+|..++++++|++|++++| .++.. .|..+. ++++|++|++++|.+ ...+|..+.++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCC
Confidence 6677899999999999998 57763 677777 999999999999985 45678889999999
Q ss_pred cEEeccCccccc--ccccccccC------CCCceEeecCCCCCCccccc--cccCCCCCCEEEeeccccChhhhhhccCC
Q 012044 134 VKLDLERCTRIH--GGLVNLKGL------MKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGIAYLKGL 203 (472)
Q Consensus 134 ~~L~l~~~~~~~--~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 203 (472)
++|++++|..+. ..+..+..+ ++|++|++++|.. . ..+. .+..+++|+.|++++|.+++..+ .+..+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 999999987333 355556554 9999999999654 4 4555 78999999999999999985555 78899
Q ss_pred CCCcEEEecCCCCChhHHHhhhcCCC-CcEEeccCCcCChhHHHHhhcC--CCCcEEEccccccChhHHHHhc-------
Q 012044 204 QKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLK------- 273 (472)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~------- 273 (472)
++|++|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+... ++|+.|++++|.+.+..+..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 99999999999887 45667889999 999999999988 444555544 4899999999999887776676
Q ss_pred CCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCC-------CCCCEeeecCCCCChhHHHhhc-
Q 012044 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL-------TNLESINLSFTGISDGSLRKLA- 345 (472)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~- 345 (472)
.+++|++|++++|.+.......+..+++|+.|++++|.+...+...+... ++|+.|++++|.++. .+..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~ 509 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRA 509 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGST
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhh
Confidence 77899999999999886555556678999999999999885444333333 399999999999985 455565
Q ss_pred -CCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeC------CCCccChhHHHHhhcCCCCcEEEecCCccccc---cccc
Q 012044 346 -GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------FGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GLTG 415 (472)
Q Consensus 346 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l------~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~ 415 (472)
.+++|++|++++|.++. .+..+..+++|+.|++ ++|.+.+..|..+..+++|++|++++|.+... ..++
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~ 588 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN 588 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTT
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCc
Confidence 89999999999999997 4667888999999999 45777888888899999999999999998665 4589
Q ss_pred CceeeccCCccChhH-----HhhccCC---cccccccccccc
Q 012044 416 LVSLNVSNSRITSAG-----LRHLKPL---KNLRSLTLESCK 449 (472)
Q Consensus 416 L~~L~l~~n~~~~~~-----~~~l~~~---~~L~~L~l~~~~ 449 (472)
|+.|++++|++.... +...... .-.+..++.+|+
T Consensus 589 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 999999999776533 3222222 233556777776
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-35 Score=285.27 Aligned_cols=349 Identities=22% Similarity=0.194 Sum_probs=179.0
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+++..+..++++++|++|++++|.......+..|..+++|++|++++|.+ ....+..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEE
Confidence 45666666666666555555666666666666665221233344555666666666666653 33334555666666666
Q ss_pred eccCcccccccccc--cccCCCCceEeecCCCCCCcccccc-ccCCCCCCEEEeeccccChhhhhhccCC--CCCcEEEe
Q 012044 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLNL 211 (472)
Q Consensus 137 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l 211 (472)
++++|......+.. +..+++|++|++++|. +....+.. +..+++|++|++++|.+....+..+..+ .+|+.+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 66665433222222 5555566666665533 22222222 4555555555555555554444444333 44555555
Q ss_pred cCCCCChhHHHh--------hhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEec
Q 012044 212 EGCPVTAACLDS--------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (472)
Q Consensus 212 ~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (472)
+++.+....... +..+++|+.|++++|.+....+..+... ...++|+.|++
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l 246 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---------------------IAGTKIQSLIL 246 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEEC
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc---------------------ccccceeeEee
Confidence 555443321111 1122344444444444443333333221 11134444444
Q ss_pred ccCCCCHH----------HHHHhh--CCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCC
Q 012044 284 DSCGIGDE----------GLVNLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (472)
Q Consensus 284 ~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (472)
+++..... ....+. ..++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 44322110 000011 224566666666666655555556666666666666666655555556666666
Q ss_pred EEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCc
Q 012044 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSR 425 (472)
Q Consensus 352 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~ 425 (472)
+|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.. .+++|+.|++++|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 666666666655455556666666666666666665555566666666666666655543 34555555555555
Q ss_pred cCh
Q 012044 426 ITS 428 (472)
Q Consensus 426 ~~~ 428 (472)
+.+
T Consensus 407 l~~ 409 (455)
T 3v47_A 407 WDC 409 (455)
T ss_dssp BCC
T ss_pred ccc
Confidence 544
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-35 Score=284.18 Aligned_cols=343 Identities=15% Similarity=0.134 Sum_probs=241.2
Q ss_pred hcCCCccEEEeecCCCChhH-HHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHH--HhCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA--FAGL 130 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~l 130 (472)
..++++++|+++++.+.+.+ +..++.+++|++|++++| .+....+..|..+++|++|++++|.+ ....+.. +.++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCc
Confidence 46789999999999886444 567899999999999998 68888788899999999999999986 4444554 8899
Q ss_pred CCCcEEeccCcccccccccc-cccCCCCceEeecCCCCCCccccccccCC--CCCCEEEeeccccChhhhhh--------
Q 012044 131 INLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAY-------- 199 (472)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~-------- 199 (472)
++|++|++++|......+.. +..+++|++|++++|. +....+..+..+ .+|+.++++++.+.......
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 99999999998765554544 7899999999999865 444455555544 68999999998877543322
Q ss_pred ccCCCCCcEEEecCCCCChhHHHhhhcC---CCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCC
Q 012044 200 LKGLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276 (472)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 276 (472)
+..+++|++|++++|.+....+..+... ++|+.|+++++........ ...++.+ ....+. -...+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~-----~~~~~~------~~~~~ 275 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDP-----DNFTFK------GLEAS 275 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCC-----CTTTTG------GGTTS
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccC-----cccccc------ccccc
Confidence 3356899999999999998877776644 8899999998864432100 0000000 000000 01235
Q ss_pred CccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcC
Q 012044 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (472)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (472)
+|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 66666666666655545556666667777776666666555566666777777777777666656666667777777777
Q ss_pred CCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 357 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+...
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 7777665555666677777777777777766555666777777777777766543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.9e-36 Score=302.21 Aligned_cols=367 Identities=16% Similarity=0.100 Sum_probs=289.5
Q ss_pred HHHHhhCCCCCCeeecCCccccCh-----------------hhHHHhh--CCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 73 GLIHLKDCSNLQSLDFNFCIQISD-----------------GGLEHLR--GLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 73 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
+|..++++++|++|++++| .++. ..|..+. ++++|++|+|++|.+. ..+|..|.++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHHhCCCCC
Confidence 5677889999999999998 5776 2566655 9999999999999853 5667889999999
Q ss_pred cEEeccCcccccc--cccccc-------cCCCCceEeecCCCCCCccccc--cccCCCCCCEEEeeccccChhhhhhccC
Q 012044 134 VKLDLERCTRIHG--GLVNLK-------GLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGIAYLKG 202 (472)
Q Consensus 134 ~~L~l~~~~~~~~--~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 202 (472)
++|++++|..+.. .|..+. .+++|++|++++|.. . ..+. .+..+++|+.|++++|.++ ..+ .++.
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC
Confidence 9999999863333 444444 455999999999654 4 4555 7899999999999999988 334 7899
Q ss_pred CCCCcEEEecCCCCChhHHHhhhcCCC-CcEEeccCCcCChhHHHHhhcCC--CCcEEEccccccChhHHHH---hc--C
Q 012044 203 LQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVH---LK--G 274 (472)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~---l~--~ 274 (472)
+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+.+..+.. +. .
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 999999999999988 55677889999 999999999988 4445555544 4999999999987643321 22 3
Q ss_pred CCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhh-------CCCCCCEeeecCCCCChhHHHhhc--
Q 012044 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLA-- 345 (472)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~-- 345 (472)
+++|+.|++++|.+.......+..+++|+.|++++|.+...+...+. .+++|+.|++++|.++. .+..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~ 750 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTT
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhc
Confidence 45899999999998865555566889999999999988754433333 23499999999999984 455665
Q ss_pred CCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCC------CccChhHHHHhhcCCCCcEEEecCCccccc---ccccC
Q 012044 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDA---GLTGL 416 (472)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~L 416 (472)
.+++|+.|++++|.++.. +..+..+++|+.|++++ |.+.+..|..+..+++|+.|++++|.+... ..++|
T Consensus 751 ~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L 829 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL 829 (876)
T ss_dssp TCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSS
T ss_pred cCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCC
Confidence 899999999999999873 56678999999999976 777888888899999999999999998655 45799
Q ss_pred ceeeccCCccChhHHhhccCCcccccccccccc
Q 012044 417 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 449 (472)
Q Consensus 417 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 449 (472)
+.|++++|++....+..+.....+..+.+.+++
T Consensus 830 ~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CEEECCCCCCCccChHHccccccchheeecCCC
Confidence 999999999877655554444444444444443
No 23
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1e-33 Score=273.32 Aligned_cols=391 Identities=24% Similarity=0.325 Sum_probs=210.2
Q ss_pred CCccEEEeecCCCChhHHHH-hhCCCCCCeeecCCccccChhh----HHHhhCCCCCCEEecCCCCCCCHHHHHHH-hCC
Q 012044 57 SSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGL 130 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~l 130 (472)
+++++|+++++.+++..... +..+++|++|++++| .+.... +..+..+++|++|++++|.+ ....+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHHH
Confidence 57899999999998766554 688999999999998 577543 34567789999999999885 44444444 456
Q ss_pred C----CCcEEeccCccccccc----ccccccCCCCceEeecCCCCCCcccccccc-----CCCCCCEEEeeccccChhh-
Q 012044 131 I----NLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG- 196 (472)
Q Consensus 131 ~----~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~- 196 (472)
+ +|++|++++|...... +..+..+++|++|++++|. +.+..+..+. ..++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 5 6888888887644322 3456667777777777644 3322222221 2345666666666655432
Q ss_pred ---hhhccCCCCCcEEEecCCCCChhHHHhhh-----cCCCCcEEeccCCcCChhH----HHHhhcCCCCcEEEcccccc
Q 012044 197 ---IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEI 264 (472)
Q Consensus 197 ---~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~ 264 (472)
+..+..+++|++|++++|.+.......+. ..++|+.|++++|.+.... +..+..+++|+.|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 33344456666666666665544333332 1345666666666554432 33344455555555555555
Q ss_pred ChhHHHH-----hcCCCCccEEecccCCCCHHH----HHHhhCCCCCCEEecCCCccCchhHHHhhC-----CCCCCEee
Q 012044 265 TDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLSG-----LTNLESIN 330 (472)
Q Consensus 265 ~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~ 330 (472)
.+..... ...+++|++|++++|.++... +..+..+++|+.|++++|.++......+.. .++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 4432111 123455555555555555432 222333455555555555544333322221 13455555
Q ss_pred ecCCCCChhH----HHhhcCCCCCCEEEcCCCCCChHHHHHHhC-----CCCCCEEeCCCCccCh----hHHHHhhcCCC
Q 012044 331 LSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITD----SGAAYLRNFKN 397 (472)
Q Consensus 331 l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~l~~----~~~~~l~~~~~ 397 (472)
+++|.+++.. +..+..+++|++|++++|.+++.++..+.. .++|++|++++|.+++ ..+..+..
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--- 396 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA--- 396 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH---
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh---
Confidence 5555444331 222233444555555555444443333221 3444445554444443 22333333
Q ss_pred CcEEEecCCcccccccccCceeeccCCccChhHHhhcc-----CCccccccccccccCCH---HHHHHhhccCCCCceec
Q 012044 398 LRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTA---NDIKRLQSRDLPNLVSF 469 (472)
Q Consensus 398 L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~---~~~~~l~~~~~~~l~~l 469 (472)
+++|+.|++++|++.+.+...+. ..+.|+.|++.++.... ..+..+.. ..|.++.+
T Consensus 397 ---------------~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~-~~p~l~i~ 460 (461)
T 1z7x_W 397 ---------------NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK-DKPSLRVI 460 (461)
T ss_dssp ---------------CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHH-HCTTSEEE
T ss_pred ---------------CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhc-cCCCcEee
Confidence 45555666666666655443332 23356666666655543 33444433 56777654
No 24
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7.7e-33 Score=267.15 Aligned_cols=371 Identities=23% Similarity=0.253 Sum_probs=282.7
Q ss_pred cceEecCCCCCCChHHHHHHHhcCCCccEEEeecCCCChh----HHHHhhCCCCCCeeecCCccccChhhHHHh-hCCC-
Q 012044 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS----GLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLS- 106 (472)
Q Consensus 33 ~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~- 106 (472)
++.+.+... .+.+.....+...++++++|++++|.+++. ++..+..+++|++|++++| .+.+.++..+ ..++
T Consensus 5 l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 5 IQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCS
T ss_pred ceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhh
Confidence 556666544 355544555556788999999999999864 3566778899999999997 6777666555 3455
Q ss_pred ---CCCEEecCCCCCCC---HHHHHHHhCCCCCcEEeccCccccccccccc-----ccCCCCceEeecCCCCCCccc---
Q 012044 107 ---NLTSLSFRRNNAIT---AQGMKAFAGLINLVKLDLERCTRIHGGLVNL-----KGLMKLESLNIKWCNCITDSD--- 172 (472)
Q Consensus 107 ---~L~~L~L~~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~--- 172 (472)
+|++|++++|.+.. ..++..+..+++|++|++++|......+..+ ...++|++|++++|. +....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence 79999999998543 3568889999999999999987544333322 235689999999975 43322
Q ss_pred -cccccCCCCCCEEEeeccccChhhhhhcc-----CCCCCcEEEecCCCCChh----HHHhhhcCCCCcEEeccCCcCCh
Q 012044 173 -MKPLSGLTNLKSLQISCSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSD 242 (472)
Q Consensus 173 -~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~ 242 (472)
...+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 34556789999999999998776555553 367999999999988874 35667789999999999999876
Q ss_pred hHHHHh-----hcCCCCcEEEccccccChh----HHHHhcCCCCccEEecccCCCCHHHHHHhhC-----CCCCCEEecC
Q 012044 243 DGCEKF-----SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELS 308 (472)
Q Consensus 243 ~~~~~l-----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~ 308 (472)
.....+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+.. .++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 543333 3589999999999999875 4555677999999999999997766555543 3699999999
Q ss_pred CCccCchh----HHHhhCCCCCCEeeecCCCCChhHHHhhcC-----CCCCCEEEcCCCCCCh----HHHHHHhCCCCCC
Q 012044 309 DTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAG-----LSSLKSLNLDARQITD----TGLAALTSLTGLT 375 (472)
Q Consensus 309 ~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~ 375 (472)
+|.++... +..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ ..+..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 99988763 455667899999999999998766655542 6899999999999997 4456677899999
Q ss_pred EEeCCCCccChhHHHHhh-----cCCCCcEEEecCC
Q 012044 376 HLDLFGARITDSGAAYLR-----NFKNLRSLEICGG 406 (472)
Q Consensus 376 ~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~ 406 (472)
+|++++|.+++.....+. ....|+.|.+.++
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 999999999987655442 1234555555443
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.2e-33 Score=266.84 Aligned_cols=340 Identities=27% Similarity=0.334 Sum_probs=244.8
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+.. ++ .+..+++|++|++++| .+....+ +..+++|++|++++|.+.. ..+ +.++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEE
Confidence 478889998887764 33 4778889999999987 5666554 7888899999998887533 222 8888889999
Q ss_pred eccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCC
Q 012044 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (472)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (472)
++++|.... .+ .+..+++|++|++++|. +.. ...+..+++|+.|++.+ .+... ..+.++++|++|++++|.+
T Consensus 118 ~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITD-ID-PLKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCC-CG-GGTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-Ch-HHcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 998875333 22 27788888888888754 332 23477888888888863 33332 2377888888888888877
Q ss_pred ChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHh
Q 012044 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (472)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (472)
... ..+..+++|+.|++++|.+....+ ++.+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 654 347778888888888888766543 66778888888888877653 346677888888888887765432 6
Q ss_pred hCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCE
Q 012044 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (472)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 376 (472)
..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 677788888888887766544 6677788888888877766433 5677788888888887776533 567778888
Q ss_pred EeCCCCccChhHHHHhhcCCCCcEEEecCCccccc----ccccCceeeccCCccCh
Q 012044 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 377 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~L~~L~l~~n~~~~ 428 (472)
|++++|.+.+. ..+..+++|+.|++++|.+++. .+++|+.|++++|.+++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 88888877764 3566777777777777777665 56777777777776665
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-34 Score=284.13 Aligned_cols=383 Identities=16% Similarity=0.127 Sum_probs=246.7
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|++++|.+.+..+..++++++|++|++++| .++...+..|..+++|++|++++|.+. .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCEE
Confidence 67888888888777666667778888888888876 677766777777888888888887752 33333 67788888
Q ss_pred eccCccccccc-ccccccCCCCceEeecCCCCCCccccccccCCCCC--CEEEeecccc--Chhhhhhcc----------
Q 012044 137 DLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK---------- 201 (472)
Q Consensus 137 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~---------- 201 (472)
++++|...... +..+..+++|++|+++++. +... .+..+++| +.|++++|.+ +...+..+.
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 88877644322 3567778888888887743 3322 23333444 7888877766 333333332
Q ss_pred ----------------CCCCCcEEEecCCCCC----hhHHHhhhcCCCCcEEeccCCcCChhHHHHh---hcCCCCcEEE
Q 012044 202 ----------------GLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLN 258 (472)
Q Consensus 202 ----------------~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~ 258 (472)
.+++|+.++++++... ......+..+++|+.+++.++.+.......+ ...++|++|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 3445666666655321 1123345666777777777666554332211 2335788888
Q ss_pred ccccccChhHHHHh-----cCCC--------------------------CccEEecccCCCCHHHHHHhhCCCCCCEEec
Q 012044 259 LGFNEITDECLVHL-----KGLT--------------------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (472)
Q Consensus 259 l~~~~~~~~~~~~l-----~~~~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (472)
+++|.+.+..+..+ ..++ +|++|++++|.+.... ....+++|+.|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 88887665443332 2222 3444444444332110 0145677888888
Q ss_pred CCCccCchhHHHhhCCCCCCEeeecCCCCChh--HHHhhcCCCCCCEEEcCCCCCCh-HHHHHHhCCCCCCEEeCCCCcc
Q 012044 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARI 384 (472)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l 384 (472)
++|.+....+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.++. .....+..+++|+.|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 88877766666677778888888888877753 34556777888888888887765 3223356677888888888877
Q ss_pred ChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 385 TDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 385 ~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
++..+..+. ++|++|++++|.++.. .+++|+.|++++|++....+..+..+++|+.|++++|++..
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 765443322 6788888888877755 56788888888888876444447778888888888888764
No 27
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=9.9e-32 Score=267.93 Aligned_cols=460 Identities=21% Similarity=0.232 Sum_probs=316.0
Q ss_pred CCcHHHHHHHHHHHH-hccccCHHH-HHHh---cCCccceEecCCCCCCChHHHHHHHhcCCCccEEEeecCCCC-hh--
Q 012044 1 MLPRDISQQIFNELV-YSRCLTEVS-LEAF---RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DS-- 72 (472)
Q Consensus 1 ~~p~e~~~~~~~~l~-~~~~~~~~~-~~~~---~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~-~~-- 72 (472)
.+|+|++..||..+. .+....... -..+ .....+++.+..+...... ....+++++++|+++++... +.
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~l 84 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNL 84 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCCCchhhccc
Confidence 479999999998765 211100000 0000 1112345555555444332 34556788999999976421 11
Q ss_pred ------------HHHHhhCCCCCCeeecCCccccChhhHHHhh-CCCCCCEEecCCCCCCCHH-HHHHHhCCCCCcEEec
Q 012044 73 ------------GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDL 138 (472)
Q Consensus 73 ------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~-~~~~~~~l~~L~~L~l 138 (472)
+......+++|++|++++| .+++..+..+. .+++|++|++++|..+... ++..+.++++|++|++
T Consensus 85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred ccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 1233357899999999998 58887777775 7899999999988544444 4444558999999999
Q ss_pred cCccccccccc----ccccCCCCceEeecCCC-CCCcccccc-ccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEec
Q 012044 139 ERCTRIHGGLV----NLKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (472)
Q Consensus 139 ~~~~~~~~~~~----~~~~l~~L~~L~l~~~~-~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (472)
++|........ ....+++|++|++++|. ......... +..+++|+.|++.++......+..+..+++|++|++.
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 98863332222 23467899999999875 222222222 2457899999998883323355667788999999976
Q ss_pred CCCC--C----hhHHHhhhcCCCCcEE-eccCCcCChhHHHHhhcCCCCcEEEccccccChhHHH-HhcCCCCccEEecc
Q 012044 213 GCPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLD 284 (472)
Q Consensus 213 ~~~~--~----~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~ 284 (472)
.+.. . ...+..+.++++|+.+ .+..... ...+..+..+++|+.|++++|.+++.... .+..+++|++|.+.
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 6532 1 1233467788999988 3433221 22333445678999999999987765444 35788999999999
Q ss_pred cCCCCHHHHHHh-hCCCCCCEEecC---------CCccCchhHHHhh-CCCCCCEeeecCCCCChhHHHhhc-CCCCCCE
Q 012044 285 SCGIGDEGLVNL-TGLCNLKCLELS---------DTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKS 352 (472)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~ 352 (472)
+| +.+.....+ ..+++|+.|++. .+.++......+. .+++|+.|.+..+.+++.....+. .+++|++
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 88 544444433 358899999883 3456655555554 589999998888888887776665 5899999
Q ss_pred EEcC--C----CCCC----hHHH-HHHhCCCCCCEEeCCCCccChhHHHHhhc-CCCCcEEEecCCccccc-------cc
Q 012044 353 LNLD--A----RQIT----DTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDA-------GL 413 (472)
Q Consensus 353 L~l~--~----~~~~----~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~-------~~ 413 (472)
|+++ + +.++ +.+. ..+..+++|+.|++++ .+++.....+.. +++|++|++++|.+++. .+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 9998 4 5566 3333 3357789999999988 777776666655 89999999999998765 57
Q ss_pred ccCceeeccCCccChhHHhh-ccCCccccccccccccCCHHHHHHhhccCCCCcee
Q 012044 414 TGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 468 (472)
Q Consensus 414 ~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~l~~ 468 (472)
++|++|++++|.+++.++.. ...+++|++|++++|+++..++..+.. .+|++..
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~lp~l~i 535 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ-KMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH-HCTTEEE
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH-hCCCCEE
Confidence 99999999999998776654 456899999999999999988888743 5677743
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.1e-32 Score=260.39 Aligned_cols=325 Identities=31% Similarity=0.394 Sum_probs=210.5
Q ss_pred hcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
..++++++|+++++.+.+..+ ++++++|++|++++| .+....+ +..+++|++|++++|.+.. . + .+.++++|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~-~-~-~~~~l~~L 136 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITD-I-D-PLKNLTNL 136 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-C-G-GGTTCTTC
T ss_pred hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCC-C-h-HHcCCCCC
Confidence 346677777777777765433 667777777777776 4555443 6677777777777776432 2 1 26677777
Q ss_pred cEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecC
Q 012044 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (472)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (472)
++|++++|... . ...+..+++|+.|++++ . .. ....+..+++|+.|++++|.+... ..+..+++|++|++++
T Consensus 137 ~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~-~-~~--~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 137 NRLELSSNTIS-D-ISALSGLTSLQQLSFGN-Q-VT--DLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 208 (466)
T ss_dssp SEEEEEEEEEC-C-CGGGTTCTTCSEEEEEE-S-CC--CCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CEEECCCCccC-C-ChhhccCCcccEeecCC-c-cc--CchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecC
Confidence 77777776432 2 22466677777777753 1 22 122366677777777777766543 3366677777777777
Q ss_pred CCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHH
Q 012044 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (472)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 293 (472)
|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 76665432 55677777777777766543 245667777777777776665433 6667777777777776654332
Q ss_pred HHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCC
Q 012044 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (472)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 373 (472)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++
T Consensus 283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 5666777777777776665433 5667777777777777665443 55667777777777776664 34666777
Q ss_pred CCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccc
Q 012044 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (472)
Q Consensus 374 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (472)
|+.|++++|.+.+..| +..+++|+.|++++|.++.
T Consensus 355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7777777777776655 6667777777777776655
No 29
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.1e-31 Score=267.32 Aligned_cols=397 Identities=18% Similarity=0.156 Sum_probs=186.1
Q ss_pred hHHHHHHHhcCCCccEEEeecCCCChhHHHHhhC-CCC-CCeeecCCccccChhhHHHh-hCCCCCCEEecCCCCCCCH-
Q 012044 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITA- 121 (472)
Q Consensus 46 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~- 121 (472)
..|...+...++++++|+|+++.+++..+..++. +++ |++|++++|..+.......+ ..+++|++|+|++|.+...
T Consensus 101 ~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 101 TPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc
Confidence 3455555555566666666655555555554443 333 66666665543333333322 3555666666665543111
Q ss_pred --HHHHHHhCCCCCcEEeccCcccc----cccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccC--
Q 012044 122 --QGMKAFAGLINLVKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-- 193 (472)
Q Consensus 122 --~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-- 193 (472)
.++..+..+++|++|+++++... ...+..+..+++|++|++++|.... .+..+..+++|++|++......
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccc
Confidence 13334445556666666554432 1111223455566666665533221 2234445555666655432111
Q ss_pred -hhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHH-HHhhcCCCCcEEEccccccChh-HHH
Q 012044 194 -DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDE-CLV 270 (472)
Q Consensus 194 -~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~ 270 (472)
......+..+++|+.+++.++.. ...+..+..+++|++|++++|.+..... ..+..+++|+.|++++ .+.+. .+.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~ 336 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEV 336 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHH
T ss_pred hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHH
Confidence 11122344555555555554322 1223344455566666666555443333 2234555666666552 22222 222
Q ss_pred HhcCCCCccEEeccc-----------CCCCHHHHHH-hhCCCCCCEEecCCCccCchhHHHhhC-CCCCCEeeec----C
Q 012044 271 HLKGLTNLESLNLDS-----------CGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS----F 333 (472)
Q Consensus 271 ~l~~~~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~ 333 (472)
....+++|++|++.+ +.+++..... ...+++|+.|.+..+.++...+..+.. +++|+.|++. .
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 234455566666652 2444433322 233555666665555555544444443 5556666554 2
Q ss_pred CCCChh-----HHHhhcCCCCCCEEEcCCCC--CChHHHHHHh-CCCCCCEEeCCCCccChhH-HHHhhcCCCCcEEEec
Q 012044 334 TGISDG-----SLRKLAGLSSLKSLNLDARQ--ITDTGLAALT-SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEIC 404 (472)
Q Consensus 334 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~ 404 (472)
+.+++. ....+..+++|++|+++.|. +++..+..+. .+++|+.|++++|.+++.. +..+..+++|++|+++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 233321 22223345556666654432 4444444432 3555666666555555432 2333455555555555
Q ss_pred CCccccc-------ccccCceeeccCCccChhHHhhc-cCCccccccccc
Q 012044 405 GGGLTDA-------GLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLE 446 (472)
Q Consensus 405 ~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~ 446 (472)
+|.+++. .+++|+.|++++|++++.+...+ ..++.+....+.
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 5554432 34555555555555554443333 234444444333
No 30
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=1.9e-31 Score=265.66 Aligned_cols=414 Identities=19% Similarity=0.197 Sum_probs=303.5
Q ss_pred HHHHhcCCCccEEEeecCCC--------------ChhHHH-HhhCCCCCCeeecCCccccChhhHHHhhC-CCC-CCEEe
Q 012044 50 DVIASQGSSLLSVDLSGSDV--------------TDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLS 112 (472)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~--------------~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~ 112 (472)
..+..+++++++|+++++.. ...... ....+++|++|++++| .+++..+..+.. +++ |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEE
Confidence 34556678899999976432 111222 2348899999999998 688777777755 444 99999
Q ss_pred cCCCCCCCHH-HHHHHhCCCCCcEEeccCccccccc----ccccccCCCCceEeecCCCCC--C-ccccccccCCCCCCE
Q 012044 113 FRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCI--T-DSDMKPLSGLTNLKS 184 (472)
Q Consensus 113 L~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~--~-~~~~~~l~~~~~L~~ 184 (472)
+++|..+... .+.....+++|++|++++|...... ......+++|++|+++++... . ......+..+++|+.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 9988643333 3344458899999999998643322 223467899999999875532 1 122334457899999
Q ss_pred EEeeccccChhhhhhccCCCCCcEEEecCCCCC---hhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccc
Q 012044 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261 (472)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 261 (472)
|++.++.+.. .+..+..+++|++|++...... ......+..+++|+.+.++++.. ...+..+..+++|++|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 9999887775 3466788899999999753221 11223456778999999887533 33445667889999999999
Q ss_pred cccChhHH-HHhcCCCCccEEecccCCCCHHHHHH-hhCCCCCCEEecCC-----------CccCchhHHH-hhCCCCCC
Q 012044 262 NEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSD-----------TQVGSSGLRH-LSGLTNLE 327 (472)
Q Consensus 262 ~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~ 327 (472)
|.+++... ..+..+++|++|++.+ .+.+..... +..+++|+.|++++ +.++...... ...+++|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 98776554 3468999999999984 444443333 35789999999993 4566554444 45799999
Q ss_pred EeeecCCCCChhHHHhhcC-CCCCCEEEcC----CCCCChH-----HHHHHhCCCCCCEEeCCCCc--cChhHHHHh-hc
Q 012044 328 SINLSFTGISDGSLRKLAG-LSSLKSLNLD----ARQITDT-----GLAALTSLTGLTHLDLFGAR--ITDSGAAYL-RN 394 (472)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~l~~~~~L~~L~l~~~~--l~~~~~~~l-~~ 394 (472)
+|++..+.+++..+..++. +++|++|+++ .+.+++. ....+..+++|+.|+++.|. +++.....+ ..
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 9999888999887777765 8999999996 5667652 33446779999999998664 777666665 45
Q ss_pred CCCCcEEEecCCccccc-------ccccCceeeccCCccChhHHhh-ccCCccccccccccccCCHHHHHHhhccCCCCc
Q 012044 395 FKNLRSLEICGGGLTDA-------GLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 466 (472)
Q Consensus 395 ~~~L~~L~l~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~l 466 (472)
+++|+.|++++|.+++. .+++|++|++++|.+++..+.. +..+++|++|++++|+++..++..+.. .+|.+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~-~~p~l 540 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM-ARPYW 540 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG-CCTTE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH-hCCCc
Confidence 89999999999998874 6899999999999998765554 467999999999999999988887765 67776
Q ss_pred ee
Q 012044 467 VS 468 (472)
Q Consensus 467 ~~ 468 (472)
..
T Consensus 541 ~~ 542 (592)
T 3ogk_B 541 NI 542 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.7e-30 Score=240.96 Aligned_cols=303 Identities=30% Similarity=0.355 Sum_probs=162.8
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+++++|+++++.+... ..++.+++|++|++++| .+....+ +..+++|++|++++|.+.. ...+.++++|++|
T Consensus 44 ~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITD---ISALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCTTCSEE
T ss_pred ccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccC---chHHcCCCcCCEE
Confidence 4566666665555432 22555666666666655 4444333 5555566666666554322 1235555555555
Q ss_pred eccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCC
Q 012044 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (472)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (472)
++++|.... .+. +..+++|++|++++|..... ...+..+++|+.|+++++.+.....
T Consensus 116 ~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~------------------- 172 (347)
T 4fmz_A 116 YLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP------------------- 172 (347)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred ECcCCcccC-chh-hccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence 555543221 111 44455555555554433321 1224444444444444444333211
Q ss_pred ChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHh
Q 012044 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (472)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (472)
+..+++|+.|++++|.+..... +..+++|+.++++++.+.+..+ +..+++|++|++++|.+....+ +
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 173 -------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp -------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred -------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 3444444555554444433221 4445555555555554443222 4455556666666555543322 5
Q ss_pred hCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCE
Q 012044 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (472)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 376 (472)
..+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 5556666666666655543 2355667777777777766654 33566677777777777777766677777777777
Q ss_pred EeCCCCccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 377 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
|++++|.+++..+ +..+++|++|++++|.++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7777777776555 666777777777776654
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.3e-30 Score=239.99 Aligned_cols=283 Identities=27% Similarity=0.356 Sum_probs=197.5
Q ss_pred hcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
..++++++|+++++.+++..+ ++.+++|++|++++| .+... ..+..+++|++|++++|.+.. . + .+..+++|
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~--~~~~~l~~L~~L~l~~n~i~~-~-~-~~~~l~~L 134 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDI--SALQNLTNLRELYLNEDNISD-I-S-PLANLTKM 134 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCSEEECTTSCCCC-C-G-GGTTCTTC
T ss_pred hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCc--hHHcCCCcCCEEECcCCcccC-c-h-hhccCCce
Confidence 458899999999999986544 899999999999998 66664 368999999999999998643 2 2 28899999
Q ss_pred cEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecC
Q 012044 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (472)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (472)
++|++++|..... ...+..+++|++|++++|.... . ..+..+++|+.|++++|.+..... +..+++|+.+++.+
T Consensus 135 ~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 135 YSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD-V--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp CEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred eEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCC-c--hhhccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence 9999999865543 4448899999999999865433 2 227889999999999998876433 77888999999988
Q ss_pred CCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHH
Q 012044 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (472)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 293 (472)
|.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+...
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-- 280 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-- 280 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--
Confidence 88776533 6778888888888887765443 66677777777777766542 3455666666666666655432
Q ss_pred HHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCC
Q 012044 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (472)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (472)
..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 234445555555555555554444555555555555555555444332 34445555555555443
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=7.5e-33 Score=278.45 Aligned_cols=392 Identities=22% Similarity=0.212 Sum_probs=269.9
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 136 (472)
+.+++|+|++|.+++..+..|+++++|++|++++| .+....+..|..+++|++|+|++|.+ ....+..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEE
Confidence 57999999999999877788999999999999998 78888888899999999999999985 45556789999999999
Q ss_pred eccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCC----CcEEEec
Q 012044 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNLE 212 (472)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l~ 212 (472)
++++|......+..++.+++|++|++++|.......+..+..+++|+.|++++|.++...+..+..+.+ ...++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999986554444568999999999999966544445677888999999999999887654444432221 1123333
Q ss_pred CCCC-----------------------Ch-hHHHhhhcCCCCcEE-----------------------------------
Q 012044 213 GCPV-----------------------TA-ACLDSLSALGSLFYL----------------------------------- 233 (472)
Q Consensus 213 ~~~~-----------------------~~-~~~~~l~~~~~L~~L----------------------------------- 233 (472)
.+.+ .. .....+..+..++..
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 2222 11 111122222222221
Q ss_pred ----------------------eccCCcCChhHHHHhhcCCCCcEEEccccccChhHH-------------------HHh
Q 012044 234 ----------------------NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-------------------VHL 272 (472)
Q Consensus 234 ----------------------~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------------------~~l 272 (472)
.+.++.+... ..+.....++.|++.++.+..... ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 1111111100 112223445555555443321100 011
Q ss_pred cCCCCccEEecccCCCCHH--HHHHhhC-----------------------CCCCCEEecCCCccCc-hhHHHhhCCCCC
Q 012044 273 KGLTNLESLNLDSCGIGDE--GLVNLTG-----------------------LCNLKCLELSDTQVGS-SGLRHLSGLTNL 326 (472)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~--~~~~~~~-----------------------~~~L~~L~l~~~~~~~-~~~~~l~~~~~L 326 (472)
..+++|+.++++++.+... .+..+.. +++|+.+++..+.... .....+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 2356667777666654211 1122223 3445555554443222 122345567788
Q ss_pred CEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCCh-HHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecC
Q 012044 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (472)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 405 (472)
+.++++.|.+....+..+..+++++.|++++|.... ..+..+..+++|+.|++++|++.+..+..+.++++|++|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 888888887777666677788999999999986443 3345678889999999999999998888999999999999999
Q ss_pred Cccccc------ccccCceeeccCCccChhHHhhccCC-ccccccccccccCCH
Q 012044 406 GGLTDA------GLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA 452 (472)
Q Consensus 406 ~~~~~~------~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~~~l~~ 452 (472)
|+++.. .+++|+.|++++|++....+..+..+ ++|+.|++++|++.-
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 998876 57899999999999999888888887 689999999988764
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.7e-32 Score=268.30 Aligned_cols=363 Identities=17% Similarity=0.163 Sum_probs=273.2
Q ss_pred hcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L 133 (472)
...+++++|++++|.+++..+..++.+++|++|++++| .+...+.. .+++|++|++++|.+.....|..|+++++|
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 46789999999999999887888999999999999998 56654333 789999999999986443345789999999
Q ss_pred cEEeccCcccccccccccccCCCC--ceEeecCCCCC-Ccccccc--------------------------ccCCCCCCE
Q 012044 134 VKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKP--------------------------LSGLTNLKS 184 (472)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~-~~~~~~~--------------------------l~~~~~L~~ 184 (472)
++|++++|..... .+..+++| ++|+++++... ....+.. +..+++|+.
T Consensus 149 ~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 149 TFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 9999999865432 34455555 99999986530 2222222 234567888
Q ss_pred EEeeccccC----hhhhhhccCCCCCcEEEecCCCCChhHHHhh---hcCCCCcEEeccCCcCChhHHHHh-----hcC-
Q 012044 185 LQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL---SALGSLFYLNLNRCQLSDDGCEKF-----SKI- 251 (472)
Q Consensus 185 L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-----~~~- 251 (472)
+++++|... ......+..+++|+.+++.++.+.......+ ...++|++|++++|.+.+..+..+ ..+
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 888877421 1234457888999999998887765432221 234699999999988764333322 222
Q ss_pred -------------------------CCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEe
Q 012044 252 -------------------------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306 (472)
Q Consensus 252 -------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (472)
.+|+.|+++++.+.... ....+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 383 (562)
T 3a79_B 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383 (562)
T ss_dssp EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEE
T ss_pred heehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEE
Confidence 34566666665543211 126789999999999999876677788999999999
Q ss_pred cCCCccCch--hHHHhhCCCCCCEeeecCCCCCh-hHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCC-CCCCEEeCCCC
Q 012044 307 LSDTQVGSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGA 382 (472)
Q Consensus 307 l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 382 (472)
+++|.+... .+..+..+++|++|++++|.++. .....+..+++|++|++++|.+++..+. .+ ++|+.|++++|
T Consensus 384 L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~~L~~L~L~~N 460 (562)
T 3a79_B 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNN 460 (562)
T ss_dssp CCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS---SCCTTCSEEECCSS
T ss_pred CCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh---hhcCcCCEEECCCC
Confidence 999998873 34567899999999999999876 3444567889999999999999875433 34 69999999999
Q ss_pred ccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccChh
Q 012044 383 RITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITSA 429 (472)
Q Consensus 383 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~~ 429 (472)
.++.. |..+..+++|++|++++|.++.. .+++|+.|++++|++.+.
T Consensus 461 ~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 461 RIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred cCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99864 44455899999999999998865 578999999999998763
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=6.6e-32 Score=261.43 Aligned_cols=315 Identities=20% Similarity=0.192 Sum_probs=220.7
Q ss_pred CEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEee
Q 012044 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (472)
Q Consensus 109 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 188 (472)
+.++.++.... .+|..+ .+++++|++++|......+..+..+++|++|++++| .+....+..+..+++|+.|+++
T Consensus 14 ~~v~c~~~~l~--~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS--SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC--cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence 45565555431 223222 257888888887654444567778888888888874 4555556777788888888888
Q ss_pred ccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhH
Q 012044 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268 (472)
Q Consensus 189 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (472)
+|.++......|.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88777666666777888888888888777766667777888888888888777666666777788888888887777665
Q ss_pred HHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCC
Q 012044 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348 (472)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 348 (472)
+..+..+++|+.|++.+|.+.......+..+++|+.|+++++......+.......+|+.|++++|.++......+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 56677778888888887777655445566777777777777654443333333445777777777777766556667777
Q ss_pred CCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeecc
Q 012044 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVS 422 (472)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~ 422 (472)
+|++|++++|.++......+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.. .+++|+.|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 777777777777765555566777777777777777776666677777777777777776654 45677777777
Q ss_pred CCccCh
Q 012044 423 NSRITS 428 (472)
Q Consensus 423 ~n~~~~ 428 (472)
+|++..
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 776653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.7e-32 Score=262.46 Aligned_cols=321 Identities=23% Similarity=0.210 Sum_probs=240.8
Q ss_pred cEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEecc
Q 012044 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (472)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (472)
+.++.++..++. +|..+ .+++++|++++| .+....+..|..+++|++|+|++|.+ ....+..|.++++|++|+++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCcc-CEeChhhhhCCccCCEEECC
Confidence 467777666653 34322 368999999997 78888788889999999999999874 45557788899999999999
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChh
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 219 (472)
+|.........+..+++|++|++++|. +....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+...
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 876444334557888999999998854 4545566778888999999988888877777788888999999988888777
Q ss_pred HHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCC
Q 012044 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299 (472)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 299 (472)
....+..+++|+.|++++|.+.......|..+++|+.|+++++...+..+.......+|++|++++|.+.......+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 66778888888888888888877666677778888888888876555444444444578888888777766555566777
Q ss_pred CCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeC
Q 012044 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (472)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 379 (472)
++|+.|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 77777777777777666666667777777777777777666666777777777777777777655555666777777777
Q ss_pred CCCccCh
Q 012044 380 FGARITD 386 (472)
Q Consensus 380 ~~~~l~~ 386 (472)
++|.+..
T Consensus 328 ~~N~l~c 334 (477)
T 2id5_A 328 DSNPLAC 334 (477)
T ss_dssp CSSCEEC
T ss_pred cCCCccC
Confidence 7776653
No 37
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=3.9e-30 Score=256.37 Aligned_cols=412 Identities=19% Similarity=0.187 Sum_probs=307.8
Q ss_pred ccceEecCCCC-------------CCChHHHHHHHhcCCCccEEEeecCCCChhHHHHhh-CCCCCCeeecCCccccChh
Q 012044 32 ALQDLCLGQYP-------------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDG 97 (472)
Q Consensus 32 ~~~~l~l~~~~-------------~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 97 (472)
.++.+.+..++ +....|...+...++++++|+++++.+++..+..+. .+++|++|++++|..+...
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 36666665543 334567888888899999999999999988888886 7999999999999777766
Q ss_pred hHHHh-hCCCCCCEEecCCCCCCCHHHH----HHHhCCCCCcEEeccCcc-ccc-ccc-cccccCCCCceEeecCCCCCC
Q 012044 98 GLEHL-RGLSNLTSLSFRRNNAITAQGM----KAFAGLINLVKLDLERCT-RIH-GGL-VNLKGLMKLESLNIKWCNCIT 169 (472)
Q Consensus 98 ~~~~~-~~~~~L~~L~L~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~-~~~-~~~~~l~~L~~L~l~~~~~~~ 169 (472)
....+ ..+++|++|++++|.+. ...+ .....+++|++|++++|. .+. ... .....+++|++|++++|....
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEEE-CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHhCCCCCEEeCcCCccC-CcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 55555 58999999999999742 2222 223377899999999885 121 111 223568999999999975554
Q ss_pred ccccccccCCCCCCEEEeeccc-------cChhhhhhccCCCCCcEEE-ecCCCCChhHHHhhhcCCCCcEEeccCCcCC
Q 012044 170 DSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (472)
Q Consensus 170 ~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 241 (472)
+ .+..+..+++|+.|++..+. +.. .+..+.++++|+.+. +.... ....+..+..+++|+.|++++|.+.
T Consensus 226 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 226 K-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp H-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred H-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCC
Confidence 4 45566788999999976543 222 334678999999994 43322 2223344457899999999999977
Q ss_pred hhHHH-HhhcCCCCcEEEccccccChhHHH-HhcCCCCccEEecc---------cCCCCHHHHHHhh-CCCCCCEEecCC
Q 012044 242 DDGCE-KFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLD---------SCGIGDEGLVNLT-GLCNLKCLELSD 309 (472)
Q Consensus 242 ~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~---------~~~~~~~~~~~~~-~~~~L~~L~l~~ 309 (472)
..... .+..+++|+.|+++++ +.+.... ....+++|++|++. .+.+++.....+. .+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 65443 3568899999999988 4443333 34468999999993 3467766665554 489999998888
Q ss_pred CccCchhHHHhh-CCCCCCEeeec--C----CCCC----hh-HHHhhcCCCCCCEEEcCCCCCChHHHHHHhC-CCCCCE
Q 012044 310 TQVGSSGLRHLS-GLTNLESINLS--F----TGIS----DG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTH 376 (472)
Q Consensus 310 ~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~ 376 (472)
+.++......+. .+++|+.|++. + +.++ +. ....+..+++|++|++++ .+++..+..+.. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 888877766665 68999999999 3 4555 22 223356789999999988 888887777765 899999
Q ss_pred EeCCCCccChhHHHHh-hcCCCCcEEEecCCccccc-------ccccCceeeccCCccChhHHhhc-cCCcccccccccc
Q 012044 377 LDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDA-------GLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLES 447 (472)
Q Consensus 377 L~l~~~~l~~~~~~~l-~~~~~L~~L~l~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~ 447 (472)
|++++|.+++.....+ ..+++|++|++++|.+++. .+++|+.|++++|+++..+...+ ..++.|+...+..
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 9999999988777666 7799999999999998654 47899999999999987777766 5678887766665
Q ss_pred cc
Q 012044 448 CK 449 (472)
Q Consensus 448 ~~ 449 (472)
+.
T Consensus 541 ~~ 542 (594)
T 2p1m_B 541 RG 542 (594)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2e-30 Score=244.14 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=224.9
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCC
Q 012044 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (472)
Q Consensus 104 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 183 (472)
.++++++|+++++.+ ....+..|..+++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 357899999998874 44444567889999999999986554444578889999999999854 5555667788889999
Q ss_pred EEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccc
Q 012044 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (472)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (472)
.|++++|.++......+.++++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.++++++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999988876666678889999999999888777666788888999999998887754 35567888888888887
Q ss_pred cChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHh
Q 012044 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (472)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (472)
+.. +...++|++|++++|.+.... ....++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 654 345567888888888775431 12346788888888777654 35667778888888888777766667
Q ss_pred hcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc---ccccCceee
Q 012044 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GLTGLVSLN 420 (472)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~L~~L~ 420 (472)
+..+++|++|++++|.++.. +..+..+++|+.|++++|.+.+. +..+..+++|+.|++++|.++.. .+++|+.|+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~ 345 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred ccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeCchhhccCCEEE
Confidence 77777788888887777653 22234567777777777777653 33455667777777777666554 455555566
Q ss_pred ccCCccChhH
Q 012044 421 VSNSRITSAG 430 (472)
Q Consensus 421 l~~n~~~~~~ 430 (472)
+++|++....
T Consensus 346 l~~N~~~~~~ 355 (390)
T 3o6n_A 346 LSHNDWDCNS 355 (390)
T ss_dssp CCSSCEEHHH
T ss_pred cCCCCccchh
Confidence 6666555443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.2e-30 Score=242.05 Aligned_cols=312 Identities=16% Similarity=0.104 Sum_probs=251.8
Q ss_pred CCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCc
Q 012044 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (472)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (472)
.++++++|+++++ .+...+...+..+++|++|++++|.+ ....+..|..+++|++|++++|......+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4689999999987 67887777788899999999999875 445556788999999999999875555556688899999
Q ss_pred eEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCC
Q 012044 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (472)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (472)
+|++++|. +.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 99999854 4444445568889999999999988877777788999999999999988764 3567889999999998
Q ss_pred cCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHH
Q 012044 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (472)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (472)
.+.. +...++|+.|++++|.+.... ....++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 8764 345578999999998876542 13457899999999988764 4678889999999999998887778
Q ss_pred HhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCC
Q 012044 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (472)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 398 (472)
.+..+++|+.|++++|.++.. +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+.... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccC
Confidence 888899999999999988763 33445788999999999988754 344567789999999999988753 6678899
Q ss_pred cEEEecCCccccc
Q 012044 399 RSLEICGGGLTDA 411 (472)
Q Consensus 399 ~~L~l~~~~~~~~ 411 (472)
+.|++++|.+...
T Consensus 342 ~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 342 KNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEcCCCCccch
Confidence 9999999988765
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.5e-30 Score=245.89 Aligned_cols=337 Identities=18% Similarity=0.131 Sum_probs=217.8
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
.+++++|+++++.+++. + .++.+++|++|++++| .++..+ +..+++|++|++++|.+.. . .++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~-~---~~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTN-L---DVTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSC-C---CCTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCce-e---ecCCCCcCCE
Confidence 46888999998888764 4 6788899999999987 566642 7788889999999887643 2 2778888999
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
|++++|.... . .+..+++|++|++++|. +... .+..+++|+.|++++|...... .+..+++|++|++++|.
T Consensus 111 L~L~~N~l~~-l--~~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTK-L--DVSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSC-C--CCTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCe-e--cCCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9998875433 2 27788889999988854 3332 3677888889988888433322 46778888999988888
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHH
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (472)
+.... +..+++|+.|++++|.+... .++.+++|+.|++++|.+++. + +..+++|+.|++++|.+.+..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 77642 67788888888888887764 367788888888888888763 3 677888888888888776543
Q ss_pred hhCCCCCCEEecCCC----------ccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHH
Q 012044 296 LTGLCNLKCLELSDT----------QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (472)
Q Consensus 296 ~~~~~~L~~L~l~~~----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (472)
+..+++|+.|.++++ ......+ +..+++|+.|++++|...+..+. ..++|+.+++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l---------- 314 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL---------- 314 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC----------
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech----------
Confidence 345555655555443 2222111 24556666776666644332221 1122222222
Q ss_pred HHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHHhhccCCcccccccc
Q 012044 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 445 (472)
Q Consensus 366 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 445 (472)
..+++|+.|++++|.+++. .+..+++|+.|++++|.+++ ++.|..|++++|.+.+. ..+..|+.+++
T Consensus 315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--ccccccccccCCcEEec-----ceeeecCcccc
Confidence 2235566666666666553 15556666666666666554 24444444444444432 12334444444
Q ss_pred ccccCC
Q 012044 446 ESCKVT 451 (472)
Q Consensus 446 ~~~~l~ 451 (472)
++|.++
T Consensus 382 ~~N~l~ 387 (457)
T 3bz5_A 382 TNNSLT 387 (457)
T ss_dssp BTTBEE
T ss_pred ccCcEE
Confidence 444433
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=251.08 Aligned_cols=310 Identities=16% Similarity=0.154 Sum_probs=245.7
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCE
Q 012044 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (472)
Q Consensus 105 ~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (472)
+.+++.++++++.+ ....+..|.++++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|+.
T Consensus 50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 57899999999874 44555667889999999999987555455688899999999999855 56566677889999999
Q ss_pred EEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcccccc
Q 012044 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (472)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (472)
|++++|.++..++..|+++++|++|++++|.+....+..+..+++|+.|++++|.+.... ++.+++|+.+++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999999988776667789999999999999988877778889999999999999887642 56678999999999877
Q ss_pred ChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhh
Q 012044 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (472)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (472)
.+ +...++|+.|++++|.+..... ...++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 64 4566789999999987764321 1236889999998887763 456788889999999888888777788
Q ss_pred cCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc---ccccCceeec
Q 012044 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GLTGLVSLNV 421 (472)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~L~~L~l 421 (472)
..+++|++|++++|.++.. +..+..+++|+.|++++|.+... |..+..+++|+.|++++|.++.. .+++|+.|++
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l 352 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEEC
T ss_pred cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEe
Confidence 8888899999988888764 33345678888888888888864 45567788888888888887665 5677777777
Q ss_pred cCCccChhHH
Q 012044 422 SNSRITSAGL 431 (472)
Q Consensus 422 ~~n~~~~~~~ 431 (472)
++|++.+...
T Consensus 353 ~~N~~~~~~~ 362 (597)
T 3oja_B 353 SHNDWDCNSL 362 (597)
T ss_dssp CSSCEEHHHH
T ss_pred eCCCCCChhH
Confidence 7777766444
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.3e-29 Score=248.53 Aligned_cols=312 Identities=16% Similarity=0.104 Sum_probs=264.1
Q ss_pred CCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCc
Q 012044 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (472)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (472)
.+++++.++++++ .+...++..+..+++|++|++++|.+ ....+..|..+++|++|++++|......+..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4679999999997 78888888889999999999999985 455566899999999999999876555556789999999
Q ss_pred eEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCC
Q 012044 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (472)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (472)
+|++++|. +.......+..+++|+.|++++|.++...+..+..+++|++|++++|.+... .+..+++|+.|++++|
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 99999964 5555556678999999999999999988888899999999999999988765 3567899999999999
Q ss_pred cCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHH
Q 012044 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (472)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (472)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 8764 3456789999999998865322 2347899999999998763 5688899999999999999988888
Q ss_pred HhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCC
Q 012044 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (472)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 398 (472)
.+..+++|+.|++++|.++.. +..+..+++|++|++++|.++.. +..+..+++|+.|++++|.+.+.. +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 899999999999999998874 44456789999999999999854 445677899999999999998763 6778999
Q ss_pred cEEEecCCccccc
Q 012044 399 RSLEICGGGLTDA 411 (472)
Q Consensus 399 ~~L~l~~~~~~~~ 411 (472)
+.|++++|.+...
T Consensus 348 ~~L~l~~N~~~~~ 360 (597)
T 3oja_B 348 KNLTLSHNDWDCN 360 (597)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEeeCCCCCCh
Confidence 9999999998765
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.1e-28 Score=235.62 Aligned_cols=308 Identities=21% Similarity=0.137 Sum_probs=214.1
Q ss_pred HHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCccccccccccccc
Q 012044 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153 (472)
Q Consensus 74 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (472)
+..++++++|++|++++| .+...+ .+..+++|++|++++|.+.. . + +..+++|++|++++|.... . .+..
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~-~--~~~l~~L~~L~Ls~N~l~~-~--~~~~ 104 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTSNNITT-L-D--LSQNTNLTYLACDSNKLTN-L--DVTP 104 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCT--TGGGCTTCSEEECCSSCCSC-C-C--CTTCTTCSEEECCSSCCSC-C--CCTT
T ss_pred ccChhHcCCCCEEEccCC-CcccCh--hhcccCCCCEEEccCCcCCe-E-c--cccCCCCCEEECcCCCCce-e--ecCC
Confidence 345678899999999997 666652 68889999999999998643 2 2 7889999999999986433 2 2788
Q ss_pred CCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEE
Q 012044 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (472)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 233 (472)
+++|++|++++|. +... .+..+++|+.|++++|.++.. .++.+++|++|++++|...... .+..+++|+.|
T Consensus 105 l~~L~~L~L~~N~-l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSC-CSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCcCCEEECCCCc-CCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 8999999999864 4432 277888999999999988764 3778899999999988544332 46778889999
Q ss_pred eccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccC
Q 012044 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (472)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (472)
++++|.+.... +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 176 ~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence 99998887642 67788889999988888764 367788888888888887763 2 677788888888888877
Q ss_pred chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHH--
Q 012044 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-- 391 (472)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-- 391 (472)
..+ ...+++|+.|+++++ +|+.+++++|......+ ++.+++|+.|++++|...+..+..
T Consensus 247 ~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp CCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred CcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC
Confidence 653 345677777766543 34555555554433222 345677777777777654433321
Q ss_pred ------hhcCCCCcEEEecCCccccc---ccccCceeeccCCccCh
Q 012044 392 ------LRNFKNLRSLEICGGGLTDA---GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 392 ------l~~~~~L~~L~l~~~~~~~~---~~~~L~~L~l~~n~~~~ 428 (472)
+..+++|++|++++|.+++. .+++|+.|++++|++.+
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB
T ss_pred cceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCCC
Confidence 12234455555555544443 34455555555554443
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.1e-29 Score=253.33 Aligned_cols=384 Identities=19% Similarity=0.213 Sum_probs=264.4
Q ss_pred CCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceE
Q 012044 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (472)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (472)
+++++|++++| .++...+..|..+++|++|+|++|.+ ....+.+|.++++|++|++++|......+..+..+++|++|
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 38999999997 78988888999999999999999985 45556789999999999999987544444678999999999
Q ss_pred eecCCCCCCccccccccCCCCCCEEEeeccccChh-hhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCC----cEEec
Q 012044 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNL 235 (472)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l 235 (472)
++++|. +.......++.+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+.++ ..+++
T Consensus 130 ~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999964 5555666789999999999999988653 35667889999999999998877655555433222 23444
Q ss_pred cCCcCCh------------------------hHHHHhhcCCCCcEEEc--------------------------------
Q 012044 236 NRCQLSD------------------------DGCEKFSKIGSLKVLNL-------------------------------- 259 (472)
Q Consensus 236 ~~~~~~~------------------------~~~~~l~~~~~L~~L~l-------------------------------- 259 (472)
+.+.+.. .....+..+..++...+
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 4433221 11122333333332221
Q ss_pred -------------------------cccccChhHHHHhcCCCCccEEecccCCCCHHHH-------------------HH
Q 012044 260 -------------------------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-------------------VN 295 (472)
Q Consensus 260 -------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------------------~~ 295 (472)
..+.+.. ...+....+++.|.+.++.+..... ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 1111110 1123344567777776653321110 11
Q ss_pred hhCCCCCCEEecCCCccCch--hHHHhhCCCCCCEeeecCC-----------------------CCChh-HHHhhcCCCC
Q 012044 296 LTGLCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFT-----------------------GISDG-SLRKLAGLSS 349 (472)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-----------------------~~~~~-~~~~~~~~~~ 349 (472)
...+++|+.++++.|.+... .........+|+++++..+ ..... ....+..+++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 23467899999998876432 2233334445555554443 22211 1223446677
Q ss_pred CCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccC-hhHHHHhhcCCCCcEEEecCCccccc------ccccCceeecc
Q 012044 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVS 422 (472)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~ 422 (472)
++.++++.|.+....+..+..++.++.|++++|... ...+..+..+++|++|++++|+++.. .+++|++|+++
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 888888888777665666777889999999998644 34566788899999999999998876 67899999999
Q ss_pred CCccChhHHhhccCCccccccccccccCCHHHHHHhhccCC-CCceecCC
Q 012044 423 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP 471 (472)
Q Consensus 423 ~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-~~l~~l~~ 471 (472)
+|++.+..+..|..+++|+.|++++|+++......+. .+ ++|+.+.+
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence 9999988888889999999999999998865444332 24 46666644
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.4e-29 Score=238.88 Aligned_cols=301 Identities=18% Similarity=0.099 Sum_probs=168.0
Q ss_pred CCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccC-CCCceEeecCCCCCCccccccccCCCCCCE
Q 012044 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (472)
Q Consensus 106 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (472)
++|++|++++|.+.. +|. .+++|++|++++|... . +... ++|++|++++|. +.. .+ .+..+++|++
T Consensus 91 ~~L~~L~l~~n~l~~--lp~---~~~~L~~L~l~~n~l~-~----l~~~~~~L~~L~L~~n~-l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPE---LPQSLKSLLVDNNNLK-A----LSDLPPLLEYLGVSNNQ-LEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSS--CCC---CCTTCCEEECCSSCCS-C----CCSCCTTCCEEECCSSC-CSS-CC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCc--ccc---ccCCCcEEECCCCccC-c----ccCCCCCCCEEECcCCC-CCC-Cc-ccCCCCCCCE
Confidence 345555555554321 121 2345555555554322 1 1111 466666666543 222 22 3566666666
Q ss_pred EEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcccccc
Q 012044 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (472)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (472)
|++++|.++.. +. ..++|++|++++|.+... + .+..+++|+.|++++|.+.... ...++|+.|++++|.+
T Consensus 158 L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCC
T ss_pred EECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEEECcCCcC
Confidence 66666655532 11 124666666666665552 2 4566666666666666655321 1124666677766665
Q ss_pred ChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhh
Q 012044 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (472)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (472)
.. .+ .+..+++|++|++++|.+.+.. ...++|+.|++++|.+...+ ...++|+.|++++|.+++..
T Consensus 228 ~~-lp-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~---- 293 (454)
T 1jl5_A 228 EE-LP-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS---- 293 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES----
T ss_pred Cc-cc-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc----
Confidence 52 23 3566677777777776654311 12356777777777655422 12367777777777666521
Q ss_pred cCCCCCCEEEcCCCCCChHHHHHHhCC-CCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc--ccccCceeec
Q 012044 345 AGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA--GLTGLVSLNV 421 (472)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~L~~L~l 421 (472)
...++|++|++++|.+++. ... ++|+.|++++|.+.+. +. .+++|++|++++|.++.. .+++|+.|++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L 364 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEVPELPQNLKQLHV 364 (454)
T ss_dssp CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCCccccccchhhhccEEEC
Confidence 1125788888888877652 233 4888999988888763 22 368899999999887765 5788999999
Q ss_pred cCCccCh--hHHhhccCC-------------ccccccccccccCCH
Q 012044 422 SNSRITS--AGLRHLKPL-------------KNLRSLTLESCKVTA 452 (472)
Q Consensus 422 ~~n~~~~--~~~~~l~~~-------------~~L~~L~l~~~~l~~ 452 (472)
++|++.+ ..|..+..+ ++|+.|++++|++++
T Consensus 365 ~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 9999887 556666655 789999999999875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.2e-27 Score=219.99 Aligned_cols=262 Identities=17% Similarity=0.185 Sum_probs=147.9
Q ss_pred CCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcc
Q 012044 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (472)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (472)
.++.|+++++.++......|.++++|++|++++|.+....+..+..+++|++|++++|.+...... ..++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh---hcccccEEECC
Confidence 445555555544444343444555555555555544444344444555555555555544422111 11455555555
Q ss_pred ccccChhHHHHhcCCCCccEEecccCCCCH--HHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCCh
Q 012044 261 FNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (472)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (472)
+|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+...+.. ..++|++|++++|.+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc---ccccCCEEECCCCcCCc
Confidence 555554444445555555555555555432 2223345555666666666555432211 12566777777766666
Q ss_pred hHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-------
Q 012044 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------- 411 (472)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------- 411 (472)
..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.. .|..+..+++|++|++++|.++..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 555566666777777777776665544456666777777777776664 344556667777777777766654
Q ss_pred -----ccccCceeeccCCccCh--hHHhhccCCcccccccccccc
Q 012044 412 -----GLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCK 449 (472)
Q Consensus 412 -----~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~~~ 449 (472)
..+.++.|++++|++.. ..+..+..++.++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 23677888888888764 445677788899999998874
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3.2e-27 Score=217.18 Aligned_cols=282 Identities=17% Similarity=0.192 Sum_probs=150.8
Q ss_pred CCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEe
Q 012044 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (472)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (472)
++++++++++. +...+..+ .++|++|+++++. +....+..+..+++|++|++++|.++...+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 45566665543 22222222 2455555555532 33333344555555555555555555444445555555555555
Q ss_pred cCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCH-
Q 012044 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD- 290 (472)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 290 (472)
++|.+.... ..+. ++|++|++++|.+.......+ ..+++|++|++++|.+..
T Consensus 110 ~~n~l~~l~-~~~~--~~L~~L~l~~n~i~~~~~~~~------------------------~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 110 SKNHLVEIP-PNLP--SSLVELRIHDNRIRKVPKGVF------------------------SGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CSSCCCSCC-SSCC--TTCCEEECCSSCCCCCCSGGG------------------------SSCSSCCEEECCSCCCBGG
T ss_pred CCCcCCccC-cccc--ccCCEEECCCCccCccCHhHh------------------------CCCccCCEEECCCCccccC
Confidence 555444221 1111 445555555544443333334 444455555554444431
Q ss_pred -HHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHh
Q 012044 291 -EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (472)
Q Consensus 291 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (472)
..+..+..+ +|+.|++++|.+...+.. ..++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 112222333 555555555554432211 124666666666666655555556666666666666666655444556
Q ss_pred CCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------------ccccCceeeccCCccC--hhHHhhcc
Q 012044 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------------GLTGLVSLNVSNSRIT--SAGLRHLK 435 (472)
Q Consensus 370 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------------~~~~L~~L~l~~n~~~--~~~~~~l~ 435 (472)
.+++|+.|++++|.+.. .|..+..+++|++|++++|.++.. ..+.|+.|++++|++. ...+..+.
T Consensus 239 ~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 66677777777766664 344466667777777777666654 1356788999999887 45666788
Q ss_pred CCcccccccccccc
Q 012044 436 PLKNLRSLTLESCK 449 (472)
Q Consensus 436 ~~~~L~~L~l~~~~ 449 (472)
.++.|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 89999999998875
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.7e-26 Score=212.29 Aligned_cols=290 Identities=18% Similarity=0.186 Sum_probs=126.9
Q ss_pred CCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEe
Q 012044 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (472)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (472)
++++++++++ .+...+ ..+ .++|++|++++|.+ ....+..|.++++|++|++++|......+..+..+++|++|+
T Consensus 32 ~l~~l~~~~~-~l~~lp-~~~--~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVP-KDL--PPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTS-CCCSCC-CSC--CTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCC-CccccC-ccC--CCCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 5556666554 333221 111 23555555555543 222233455555555555555443322234444455555555
Q ss_pred ecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCC
Q 012044 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (472)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 241 (472)
++++. +.. .+..+ .++|+.|++++|.+....+..+.++++|++|++++|.+...
T Consensus 107 Ls~n~-l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 160 (330)
T 1xku_A 107 LSKNQ-LKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------- 160 (330)
T ss_dssp CCSSC-CSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------
T ss_pred CCCCc-CCc-cChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------
Confidence 54432 111 11111 13444444444444433333344444444444444433220
Q ss_pred hhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhh
Q 012044 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321 (472)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 321 (472)
...+..+..+++|+.|+++++.+... +.. ..++|++|++++|.+....+..+..+++|+.|++++|.+....+..+.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCccccC-Ccc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 01122334444444444444443321 111 114455555555544443333444555555555555555444444444
Q ss_pred CCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhC------CCCCCEEeCCCCccCh--hHHHHhh
Q 012044 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS------LTGLTHLDLFGARITD--SGAAYLR 393 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~l~~--~~~~~l~ 393 (472)
.+++|++|++++|.++. .+..+..+++|++|++++|.++......+.. .+.++.+++++|.+.. ..+..+.
T Consensus 238 ~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 55555555555555542 2233445555555555555555433333321 2455666666665543 2234455
Q ss_pred cCCCCcEEEecCC
Q 012044 394 NFKNLRSLEICGG 406 (472)
Q Consensus 394 ~~~~L~~L~l~~~ 406 (472)
.+..++.+++++|
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 5555555555544
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.9e-27 Score=216.20 Aligned_cols=243 Identities=17% Similarity=0.197 Sum_probs=148.8
Q ss_pred CCCEEEeeccccCh--hhhhhccCCCCCcEEEecC-CCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEE
Q 012044 181 NLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (472)
Q Consensus 181 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (472)
+++.|+++++.+.+ ..+..+.++++|++|++++ +.+.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555665555554 4445555566666666653 55544445555666666666666666554445556666666666
Q ss_pred EccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCC-CCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCC
Q 012044 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (472)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (472)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666555555566666666666666666544445555665 677777777766655555555555 77777777776
Q ss_pred ChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----
Q 012044 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----- 411 (472)
Q Consensus 337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~----- 411 (472)
++..+..+..+++|++|++++|.++...+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 665666666777777777777776644332 56667777777777777766666677667766666666655432
Q ss_pred ccccCceeeccCCc
Q 012044 412 GLTGLVSLNVSNSR 425 (472)
Q Consensus 412 ~~~~L~~L~l~~n~ 425 (472)
.+++|+.+++++|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 23444444444443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=5.2e-27 Score=215.75 Aligned_cols=287 Identities=20% Similarity=0.223 Sum_probs=155.3
Q ss_pred CCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEe
Q 012044 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (472)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (472)
++++++++++ .+...+. .+ .++|++|++++|.+ ....+..|.++++|++|++++|......+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~-~l~~ip~-~~--~~~l~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPK-EI--SPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSS-CCSSCCS-CC--CTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCC-CccccCC-CC--CCCCeEEECCCCcC-CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 6777777775 4443321 11 25677777777764 333445667777777777777654433445566667777777
Q ss_pred ecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCCh--hHHHhhhcCCCCcEEeccCCc
Q 012044 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQ 239 (472)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~ 239 (472)
++++.. .. .+..+. ++|++|++++|.+.......+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.
T Consensus 109 L~~n~l-~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHL-VE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCC-CS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcC-Cc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 766432 21 111111 566666666666655444455666666666666665542 222233333 45555555444
Q ss_pred CChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHH
Q 012044 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319 (472)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 319 (472)
+... +..+ .++|++|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 184 l~~l-------------------------~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 184 LTGI-------------------------PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp CSSC-------------------------CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred CCcc-------------------------Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 4321 1111 145555555555554433334455556666666666555544445
Q ss_pred hhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhC------CCCCCEEeCCCCccC--hhHHHH
Q 012044 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS------LTGLTHLDLFGARIT--DSGAAY 391 (472)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~l~--~~~~~~ 391 (472)
+..+++|+.|++++|.++. .+..+..+++|++|++++|.++......+.. .+.|+.|++++|.+. +..+..
T Consensus 237 ~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred hhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 5566666666666665553 3333555666666666666666544333322 345677777777665 344555
Q ss_pred hhcCCCCcEEEecCC
Q 012044 392 LRNFKNLRSLEICGG 406 (472)
Q Consensus 392 l~~~~~L~~L~l~~~ 406 (472)
+..+++|+.+++++|
T Consensus 316 ~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNY 330 (332)
T ss_dssp GTTBCCSTTEEC---
T ss_pred ccccchhhhhhcccc
Confidence 666666666666655
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=3.6e-28 Score=220.98 Aligned_cols=237 Identities=17% Similarity=0.142 Sum_probs=151.9
Q ss_pred HHHHHHhcC---CCccEEEeecCCCCh--hHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHH
Q 012044 48 WMDVIASQG---SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122 (472)
Q Consensus 48 ~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 122 (472)
|.++.+... .++++|+++++.+.+ ..|..++++++|++|+++++..+....+..|..+++|++|++++|.+ ...
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~ 116 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGA 116 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-CCc
Confidence 555555432 689999999999988 78888999999999999963366666677788889999999988875 345
Q ss_pred HHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCC-CCCEEEeeccccChhhhhhcc
Q 012044 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLK 201 (472)
Q Consensus 123 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~ 201 (472)
.|..|.++++|++|++++|......+..+..+++|++|++++|. +.+..+..+..++ +|+.|++++|.++...+..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 66778888888888888876554555666777777777777643 3334455566665 667777766666555555555
Q ss_pred CCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEE
Q 012044 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (472)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (472)
.++ |++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 554 66666666655544444555555555555555555433222 3344444444444444443333344444444444
Q ss_pred ecccCCC
Q 012044 282 NLDSCGI 288 (472)
Q Consensus 282 ~l~~~~~ 288 (472)
++++|.+
T Consensus 274 ~Ls~N~l 280 (313)
T 1ogq_A 274 NVSFNNL 280 (313)
T ss_dssp ECCSSEE
T ss_pred ECcCCcc
Confidence 4444433
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-25 Score=208.34 Aligned_cols=272 Identities=21% Similarity=0.156 Sum_probs=179.3
Q ss_pred cCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcE
Q 012044 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (472)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 232 (472)
.|+...+.+.+++. ++. .+..+ .++|++|+++++.++......+.++++|++|++++|.+....+..+..+++|++
T Consensus 29 ~C~~~~~c~~~~~~-l~~-iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTT-CSS-CCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCC-ccc-ccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 45555566666532 332 22222 257888999888888766667888888888888888887766667888888888
Q ss_pred EeccCCcCChhHHHHhhcCCCCcEEEccccccChhHH-HHhcCCCCccEEecccC-CCCHHHHHHhhCCCCCCEEecCCC
Q 012044 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 310 (472)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 310 (472)
|++++|.+.......+..+++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|+.|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 8888888877666667888888888888887764332 24667788888888877 354444445666777777777777
Q ss_pred ccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHH---HHhCCCCCCEEeCCCCccChh
Q 012044 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~~ 387 (472)
.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+++.... .....+.++.+++.++.+.+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 77666566667777777777777776654444444567777777777766543221 123355666777776666653
Q ss_pred ----HHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccCh
Q 012044 388 ----GAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 388 ----~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~ 428 (472)
.+..+..+++|++|++++|.++.. .+++|+.|++++|++.+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 344556666666666666655543 34555555555555544
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2e-25 Score=200.59 Aligned_cols=246 Identities=21% Similarity=0.230 Sum_probs=138.7
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCc-CChhHHHHhhcCCCCcEEE
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 258 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~ 258 (472)
++|+.|+++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 567777777776666555556666677777776666655545556666666666666664 4444344455555555555
Q ss_pred ccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCCh
Q 012044 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (472)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (472)
+++|.+.+..+..+..+++|++|++++|.+ .......+..+++|++|++++|.++.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL------------------------QALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcc------------------------cccCHhHhccCCCccEEECCCCcccc
Confidence 555555443333444455555555555444 43333334445555555555555554
Q ss_pred hHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----cc
Q 012044 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GL 413 (472)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~ 413 (472)
.....+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+... ..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 4444445555566666666555554444555556666666666666655555556666666666666655433 12
Q ss_pred ccCceeeccCCccChhHHhhccC--Ccccccccccccc
Q 012044 414 TGLVSLNVSNSRITSAGLRHLKP--LKNLRSLTLESCK 449 (472)
Q Consensus 414 ~~L~~L~l~~n~~~~~~~~~l~~--~~~L~~L~l~~~~ 449 (472)
..++.+..+.+.+....|..+.+ +..++..++.+|.
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred HHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 33455556666666666665533 5566666666663
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=201.77 Aligned_cols=281 Identities=18% Similarity=0.175 Sum_probs=150.6
Q ss_pred CCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCC
Q 012044 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (472)
Q Consensus 104 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 183 (472)
.|+.....+.+++.+. .+|..+ .++|++|++++|.........+..+++|++|++++| .+....+..+..+++|+
T Consensus 29 ~C~~~~~c~~~~~~l~--~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN--SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS--SCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc--cccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCC
Confidence 3455555666666541 223322 246777777766533333335666666666666664 34444445566666666
Q ss_pred EEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHH-HhhhcCCCCcEEeccCCc-CChhHHHHhhcCCCCcEEEccc
Q 012044 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 261 (472)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~ 261 (472)
+|++++|.++......++++++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..+++|+.|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 66666666665544445666666666666665554322 245556666666666552 4433334455555555555555
Q ss_pred cccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHH
Q 012044 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341 (472)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (472)
|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l--------------------- 242 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL--------------------- 242 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---------------------
Confidence 55554444445555555555555555543333333334455555555544433211111
Q ss_pred HhhcCCCCCCEEEcCCCCCChH----HHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccc
Q 012044 342 RKLAGLSSLKSLNLDARQITDT----GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (472)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (472)
......+.++.+++.++.+.+. .+..+..+++|+.|++++|.++..+...+..+++|++|++++|.+..
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 0112345566666666666553 23345667777777777777765444445667777777777776554
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.5e-24 Score=206.93 Aligned_cols=335 Identities=17% Similarity=0.098 Sum_probs=215.1
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCC-CCCcE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK 135 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l-~~L~~ 135 (472)
.++++|+++++.+++. |. ..++|++|++++| .++..+ ...++|++|++++|.+.. +... ++|++
T Consensus 71 ~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n-~l~~lp----~~~~~L~~L~l~~n~l~~------l~~~~~~L~~ 135 (454)
T 1jl5_A 71 RQAHELELNNLGLSSL-PE---LPPHLESLVASCN-SLTELP----ELPQSLKSLLVDNNNLKA------LSDLPPLLEY 135 (454)
T ss_dssp HTCSEEECTTSCCSCC-CS---CCTTCSEEECCSS-CCSSCC----CCCTTCCEEECCSSCCSC------CCSCCTTCCE
T ss_pred cCCCEEEecCCccccC-CC---CcCCCCEEEccCC-cCCccc----cccCCCcEEECCCCccCc------ccCCCCCCCE
Confidence 4678899998888752 22 2478999999887 555532 234789999999887532 2223 68999
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
|++++|... ..+ .+..+++|++|++++|. +.. .+. ..++|+.|++++|.++.. + .++++++|++|++++|.
T Consensus 136 L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~-lp~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 136 LGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKK-LPD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSC
T ss_pred EECcCCCCC-CCc-ccCCCCCCCEEECCCCc-Ccc-cCC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCc
Confidence 999987544 333 58888999999998854 332 222 235899999998888763 2 58888999999999888
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHH
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (472)
+.+. +. ..++|+.|++++|.+... + .++.+++|++|++++|.+.+. + ..+++|++|++++|.+.+..
T Consensus 207 l~~l-~~---~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l-~---~~~~~L~~L~l~~N~l~~l~--- 273 (454)
T 1jl5_A 207 LKKL-PD---LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLP--- 273 (454)
T ss_dssp CSSC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCC---
T ss_pred CCcC-CC---CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcc-c---ccccccCEEECCCCcccccC---
Confidence 7652 11 235889999999887743 3 477888999999998887652 2 23478999999988776421
Q ss_pred hhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCC-CCCCEEEcCCCCCChHHHHHHhCCCCC
Q 012044 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGL 374 (472)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (472)
...++|+.|++++|.+.... ...++|++|++++|.+++ +... ++|++|++++|.+++. + ..+++|
T Consensus 274 -~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l-p---~~~~~L 339 (454)
T 1jl5_A 274 -ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL-P---ALPPRL 339 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC-C---CCCTTC
T ss_pred -cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCccccc-c---ccCCcC
Confidence 12468899999998876632 123688999999888775 2233 5899999999888762 1 135789
Q ss_pred CEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc--------cc-------------ccCceeeccCCccCh--hHH
Q 012044 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA--------GL-------------TGLVSLNVSNSRITS--AGL 431 (472)
Q Consensus 375 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--------~~-------------~~L~~L~l~~n~~~~--~~~ 431 (472)
+.|++++|.++.... .+++|++|++++|.++.. .+ ++|+.|++++|++.+ ..|
T Consensus 340 ~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 340 ERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred CEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 999999998886433 478899999999888772 22 789999999999887 333
Q ss_pred hhccCCccccccccccccCCH
Q 012044 432 RHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 432 ~~l~~~~~L~~L~l~~~~l~~ 452 (472)
++++.|.+.+|.+..
T Consensus 416 ------~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 ------ESVEDLRMNSERVVD 430 (454)
T ss_dssp ---------------------
T ss_pred ------hhHhheeCcCcccCC
Confidence 356777888877654
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=5.8e-25 Score=199.77 Aligned_cols=256 Identities=20% Similarity=0.173 Sum_probs=155.7
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhH--HHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEE
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (472)
++|+.|+++++.++......+.++++|++|++++|.+.... +..+..+++|++|++++|.+... +..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEE
Confidence 45666666666665544444566666666666666554321 23444566666666666665432 2235566667777
Q ss_pred EccccccChhHH-HHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCc-hhHHHhhCCCCCCEeeecCCC
Q 012044 258 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTG 335 (472)
Q Consensus 258 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 335 (472)
++++|.+.+... ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 776666554332 345666777777777766654444455666777777777776654 334455667777777777777
Q ss_pred CChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcC-CCCcEEEecCCccccc---
Q 012044 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDA--- 411 (472)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~--- 411 (472)
+++..+..+..+++|++|++++|.+++.....+..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+...
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 776656666677777777777777766544456667777777777777777666666665 3677777777766543
Q ss_pred -----ccccCceeeccCCccChhHHhhccC
Q 012044 412 -----GLTGLVSLNVSNSRITSAGLRHLKP 436 (472)
Q Consensus 412 -----~~~~L~~L~l~~n~~~~~~~~~l~~ 436 (472)
.+...+.+.+..+.+....|..+++
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 2333444444445555544544433
No 57
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=4.7e-24 Score=196.70 Aligned_cols=294 Identities=19% Similarity=0.228 Sum_probs=169.6
Q ss_pred CCcHHHHHHHHHHHHhccccCHHHHHHhcCCccceEecCCCCCCChHHHHHHHhcCCCccEEEeecCCCChhHHHHhhCC
Q 012044 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (472)
Q Consensus 1 ~~p~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 80 (472)
++|+|++..||..+..+ ++ ..+..+...|..+... ...+++++++++.+.+ ..+..+
T Consensus 11 ~LP~eil~~If~~L~~~-----------------d~--~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~ 67 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLP-----------------EL--LKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRL 67 (336)
T ss_dssp SSCHHHHHHHHTTSCHH-----------------HH--HHTTSSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHH
T ss_pred hCCHHHHHHHHHhCCHH-----------------HH--HHHHHHHHHHHHHhcC-chhheeeccccccCCH---HHHHhh
Confidence 47899999988754221 11 1234567888887764 5568999999988873 445555
Q ss_pred --CCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCc
Q 012044 81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (472)
Q Consensus 81 --~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (472)
++++.|+++++ .+....+. +..+++|++|++++|.+.....+..+..+++|++|++++|......+..+..+++|+
T Consensus 68 ~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 68 LSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp HHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred hhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 89999999997 55554333 456889999999999853333777888899999999998864444455566677777
Q ss_pred eEeecCCCCCCcc-ccccccCCCCCCEEEeecc-ccChh-hhhhccCCC-CCcEEEecCCCCChhHHHhhhcCCCCcEEe
Q 012044 159 SLNIKWCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDS-GIAYLKGLQ-KLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (472)
Q Consensus 159 ~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (472)
+|++++|..+++. ....+..+++|++|++++| .+++. .+..+..++ +|++|++++|..
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~------------------ 207 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK------------------ 207 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG------------------
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc------------------
Confidence 7777766444432 2222344555555555555 44432 222334444 444444444410
Q ss_pred ccCCcCC-hhHHHHhhcCCCCcEEEccccc-cChhHHHHhcCCCCccEEecccC-CCCHHHHHHhhCCCCCCEEecCCCc
Q 012044 235 LNRCQLS-DDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 311 (472)
Q Consensus 235 l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (472)
.+. ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+.......+..+++|+.|+++++
T Consensus 208 ----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 208 ----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp ----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred ----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 232 2223334445555555555554 34344444555555555555555 333333334455566666666665
Q ss_pred cCchhHHHhhCCCCCCEeeecCCCCChhHHHhh
Q 012044 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (472)
Q Consensus 312 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (472)
++......+. ..+..|++++|.+++..+..+
T Consensus 283 i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 4433333332 123344456666665444433
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.5e-25 Score=201.13 Aligned_cols=233 Identities=16% Similarity=0.187 Sum_probs=119.8
Q ss_pred CCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEe
Q 012044 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (472)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (472)
+++|++|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+ +...++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEE
Confidence 3344444444444444333344444444444444444432221 3444444444444444332 11224555555
Q ss_pred cccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhc-CCCCCCEEEcCCCCCC
Q 012044 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQIT 361 (472)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 361 (472)
+++|.+.... ...+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 5555443321 11234555555555555544444444555566666665555554444332 4556666666666555
Q ss_pred hHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccC-hhHHhhcc
Q 012044 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRIT-SAGLRHLK 435 (472)
Q Consensus 362 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~-~~~~~~l~ 435 (472)
.. .....+++|++|++++|.+.+.++. +..+++|++|++++|.++.. .+++|+.|++++|++. +..+..+.
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 43 1122355666666666666654333 55566666666666665543 4566777777777776 44555667
Q ss_pred CCccccccccccc
Q 012044 436 PLKNLRSLTLESC 448 (472)
Q Consensus 436 ~~~~L~~L~l~~~ 448 (472)
.++.|+.++++++
T Consensus 260 ~~~~L~~l~l~~~ 272 (317)
T 3o53_A 260 KNQRVQTVAKQTV 272 (317)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccccceEEECCCc
Confidence 7777777777644
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.1e-23 Score=201.93 Aligned_cols=225 Identities=21% Similarity=0.165 Sum_probs=99.3
Q ss_pred CccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEe
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 137 (472)
+++.|+++++.+++..+..++++++|++|++++| .+....+..|..+++|++|+|++|.+ ....+..|.++++|++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEE
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEE
Confidence 4455555555444444444445555555555544 34444444444445555555554442 222223344445555555
Q ss_pred ccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCC
Q 012044 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (472)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 217 (472)
+++|.........+..+++|+.|++++|+.+.......+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 5544332222233444445555555444444333333444444444444444444432 12344444444444444444
Q ss_pred hhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccC
Q 012044 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (472)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (472)
...+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 443444444444444444444444433334444444444444444443332223334444444444443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.6e-24 Score=195.52 Aligned_cols=249 Identities=23% Similarity=0.229 Sum_probs=152.3
Q ss_pred cEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCH-HHHHHHhCCCCCcEEec
Q 012044 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVKLDL 138 (472)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~l 138 (472)
+.++.++..++. +|. .-.++|++|++++| .+...+...|..+++|++|++++|.+... ..+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~-ip~--~~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPT--GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS-CCS--CCCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc-CCC--CCCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 355666555542 222 12357777777776 56655555566777777777777764211 11344556777777777
Q ss_pred cCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCCh
Q 012044 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (472)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 218 (472)
++|.. ...+..+..+++|++|+++++..........+..+++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 86 s~n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 77643 33444566677777777776443222222456667777777777776665555666677777777777776654
Q ss_pred -hHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhh
Q 012044 219 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297 (472)
Q Consensus 219 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 297 (472)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 3345566667777777777776665555666667777777777766654444456666777777777766554444455
Q ss_pred CCC-CCCEEecCCCccC
Q 012044 298 GLC-NLKCLELSDTQVG 313 (472)
Q Consensus 298 ~~~-~L~~L~l~~~~~~ 313 (472)
.++ +|+.|++++|.+.
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 553 6667777666654
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=200.57 Aligned_cols=227 Identities=22% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceE
Q 012044 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (472)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (472)
++++.|++++| .+....+..|..+++|++|+|++|.+ ....+..|.++++|++|++++|.........+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 35555555554 44444444555555555555555543 23333445555555555555543322222334555555555
Q ss_pred eecCCCCCCccccccccCCCCCCEEEeecc-ccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCc
Q 012044 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (472)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 239 (472)
++++|. +.......+..+++|+.|+++++ .+.......|.++++|++|++++|.+... ..+..+++|+.|++++|.
T Consensus 142 ~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 142 WLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNH 218 (440)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSC
T ss_pred eCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCc
Confidence 555532 33333334455555555555543 33333333455555555555555555432 234455555555555555
Q ss_pred CChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCcc
Q 012044 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (472)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 312 (472)
+....+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5554445555555666666665555554444455556666666666655544444445556666666665543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=8.2e-24 Score=190.05 Aligned_cols=222 Identities=22% Similarity=0.221 Sum_probs=155.2
Q ss_pred cEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecC
Q 012044 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (472)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (472)
++++.++.. +...+.. -.++|++|+++++. +.......+..+++|+.|++++|.++...+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~-l~~ip~~--~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVG--IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSC-CSSCCTT--CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCC-cccCCcC--CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 567777643 3333332 34799999999854 5555667789999999999999999887788899999999999999
Q ss_pred CC-CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHH
Q 012044 214 CP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292 (472)
Q Consensus 214 ~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (472)
|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666778899999999999999998877778899999999999999887655555677777777777777665443
Q ss_pred HHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCC
Q 012044 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (472)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (472)
...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 3334455555555555555544434444444444444444444444333334444444444444443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=199.83 Aligned_cols=246 Identities=24% Similarity=0.245 Sum_probs=143.2
Q ss_pred CcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEec
Q 012044 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (472)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (472)
.+.++..+. .+...|..+. ++++.|+++++. +.......+..+++|+.|++++|.+....+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345555542 2333333222 566777777633 444445566667777777777776666555666667777777777
Q ss_pred CCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccc-cChhHHHHhcCCCCccEEecccCCCCHH
Q 012044 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDE 291 (472)
Q Consensus 213 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (472)
+|.+.......+..+++|+.|++++|.+.......|..+++|+.|+++++. +.......+.++++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 776665544556666777777777776665555556666677777766632 2222223455666666666666655432
Q ss_pred HHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCC
Q 012044 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371 (472)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 371 (472)
. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++......+..+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 1 34455566666666666555555555556666666666666555555555555666666666665555444444555
Q ss_pred CCCCEEeCCCCcc
Q 012044 372 TGLTHLDLFGARI 384 (472)
Q Consensus 372 ~~L~~L~l~~~~l 384 (472)
++|+.|++++|.+
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 5666666655543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.1e-23 Score=200.02 Aligned_cols=226 Identities=25% Similarity=0.256 Sum_probs=131.4
Q ss_pred CCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEe
Q 012044 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (472)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (472)
+++++|+++++ .+....+..+..+++|+.|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 46677777663 34444455666667777777776666665556666667777777776666655445566666677777
Q ss_pred ccCCcCChhHHHHhhcCCCCcEEEccccc-cChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccC
Q 012044 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (472)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (472)
+++|.+.......|..+++|+.|+++++. +.......+..+++|++|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 76666665555556666666666666532 2222222355566666666666655432 13445555666666666555
Q ss_pred chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc
Q 012044 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (472)
...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 5555555555556666665555555444455555555555555555554433444455555555555554
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.1e-23 Score=192.46 Aligned_cols=223 Identities=20% Similarity=0.210 Sum_probs=124.5
Q ss_pred cCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCc
Q 012044 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (472)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 134 (472)
..++++.|+++++.++ .+|..+.++++|++|++++| .+. ..+..+..+++|++|++++|.+. .+|..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 3477888888888776 45666777888888888886 555 44556677788888888887753 4566777788888
Q ss_pred EEeccCcccccccccccc---------cCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCC
Q 012044 135 KLDLERCTRIHGGLVNLK---------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205 (472)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 205 (472)
+|++++|......+..+. .+++|++|++++|. +. ..+..+..+++|++|++++|.++.. +..+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCC
Confidence 888877665554444333 25555555555432 22 2233344455555555555544432 223444455
Q ss_pred CcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEeccc
Q 012044 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (472)
|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++++.+.+..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 55555555444444344444444455555544444433333444444444444444444444444444444444444443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=9e-25 Score=198.69 Aligned_cols=243 Identities=20% Similarity=0.155 Sum_probs=177.5
Q ss_pred CCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCCh-hHHH-------HhhcCCCCcEEEccccccChhHHHHh--
Q 012044 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCE-------KFSKIGSLKVLNLGFNEITDECLVHL-- 272 (472)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~-------~l~~~~~L~~L~l~~~~~~~~~~~~l-- 272 (472)
.++|+++++.++.+ ..+..+... ++.|+++++.+.. ..+. .+..+++|++|++++|.+++..+..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 222323222 5555565555422 1111 22257888888888888776555554
Q ss_pred cCCCCccEEecccCCCCHHHHHHhhCC-----CCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChh--HHHhh-
Q 012044 273 KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKL- 344 (472)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~- 344 (472)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+....+..++.+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7788888888888877654 3344433 7899999999988887777888899999999999987754 23344
Q ss_pred -cCCCCCCEEEcCCCCCCh---HHHHHHhCCCCCCEEeCCCCccChhHH-HHhhcCCCCcEEEecCCccccc---ccccC
Q 012044 345 -AGLSSLKSLNLDARQITD---TGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDA---GLTGL 416 (472)
Q Consensus 345 -~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~---~~~~L 416 (472)
..+++|++|++++|.++. .....+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++.. ..++|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L 276 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEE
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCc
Confidence 678999999999999983 223445688999999999999988653 3456679999999999998865 23799
Q ss_pred ceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 417 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 417 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
+.|++++|++.+. |. +..+++|++|++++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999887 44 8899999999999999875
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.3e-23 Score=192.10 Aligned_cols=232 Identities=20% Similarity=0.193 Sum_probs=146.9
Q ss_pred CCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEE
Q 012044 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (472)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 233 (472)
.++++.|+++++. +. ..+..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+. ..+..+..+++|+.|
T Consensus 80 ~~~l~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVP-LP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSC-CS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCC-ch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4567777777644 33 24445566777777777777666 34555666677777777777665 334556666666666
Q ss_pred eccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccC
Q 012044 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (472)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (472)
++++|......+..+.. ..+ ...+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 66665543333222211 000 011334666666666666655 23344666667777777777665
Q ss_pred chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhh
Q 012044 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393 (472)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 393 (472)
..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 220 ~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 432 2466777777777777776666666677777888888888776665566677788888888888877777777777
Q ss_pred cCCCCcEEEecCC
Q 012044 394 NFKNLRSLEICGG 406 (472)
Q Consensus 394 ~~~~L~~L~l~~~ 406 (472)
.+++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7888777777654
No 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-21 Score=184.00 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=175.7
Q ss_pred hhhccCCCCCcEEEecCCCCChhHHHh----hhcCCCCcEEeccCCcCC---hhHH-------HHhhcCCCCcEEEcccc
Q 012044 197 IAYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGC-------EKFSKIGSLKVLNLGFN 262 (472)
Q Consensus 197 ~~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~-------~~l~~~~~L~~L~l~~~ 262 (472)
...+..+++|++|++++|.+....+.. +..+++|+.|++++|.+. ...+ ..+..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 344567889999999999888764444 567899999999887433 2222 23467889999999999
Q ss_pred ccCh----hHHHHhcCCCCccEEecccCCCCHHHHHHhhC----C---------CCCCEEecCCCccCchhH----HHhh
Q 012044 263 EITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLS 321 (472)
Q Consensus 263 ~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~----~~l~ 321 (472)
.+.+ ..+..+..+++|++|++++|.++...+..+.. + ++|++|++++|.++.... ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 8877 45667788899999999999887555444433 2 788999998888874333 3556
Q ss_pred CCCCCCEeeecCCCCChhH----HH-hhcCCCCCCEEEcCCCCCCh----HHHHHHhCCCCCCEEeCCCCccChhH----
Q 012044 322 GLTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITD----TGLAALTSLTGLTHLDLFGARITDSG---- 388 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~---- 388 (472)
.+++|+.|++++|.++... .. .+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+++.+
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 7888888888888887432 22 56678888888888888863 33455677888888888888888763
Q ss_pred HHHhhc--CCCCcEEEecCCcccc-----c------ccccCceeeccCCccChhHH--hhc-cCCcccccccccc
Q 012044 389 AAYLRN--FKNLRSLEICGGGLTD-----A------GLTGLVSLNVSNSRITSAGL--RHL-KPLKNLRSLTLES 447 (472)
Q Consensus 389 ~~~l~~--~~~L~~L~l~~~~~~~-----~------~~~~L~~L~l~~n~~~~~~~--~~l-~~~~~L~~L~l~~ 447 (472)
+..+.. +++|++|++++|.++. . .+++|+.|++++|++.+..+ ..+ ..++.++.+.+..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 334432 7778888888777776 1 35777777777777766542 222 2344555444443
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=8.5e-22 Score=181.54 Aligned_cols=230 Identities=19% Similarity=0.200 Sum_probs=110.4
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChh-HHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEE
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 258 (472)
++++.+++.++.+....+. +..+++|++|++++|.+... .+..+..+++|++|++++|.+....+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4566666665555443222 33455555555555554433 334444555555555555555544444444455555555
Q ss_pred cccc-ccChh-HHHHhcCCCCccEEecccC-CCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCC-CCCEeeecCC
Q 012044 259 LGFN-EITDE-CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFT 334 (472)
Q Consensus 259 l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 334 (472)
+++| .+++. .+..+..+++|++|++++| .+++.. .+..+..++ +|++|++++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-----------------------~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-----------------------VQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-----------------------HHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-----------------------HHHHHHhcccCCCEEEeCCC
Confidence 5554 34332 2233444445555555544 444321 122333444 4555555444
Q ss_pred --CCC-hhHHHhhcCCCCCCEEEcCCCC-CChHHHHHHhCCCCCCEEeCCCC-ccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 335 --GIS-DGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 335 --~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
.++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++| .+.......+..+++|++|++++| ++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 233 1222233344555555555554 44443444455555555555555 232222223445555555555555 43
Q ss_pred cc---cc-ccCceeeccCCccChhHHhhc
Q 012044 410 DA---GL-TGLVSLNVSNSRITSAGLRHL 434 (472)
Q Consensus 410 ~~---~~-~~L~~L~l~~n~~~~~~~~~l 434 (472)
+. .+ ..++.|++++|++++..+..+
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHHHHhhCcceEEecccCccccCCcc
Confidence 32 11 335666677777776655544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-23 Score=190.69 Aligned_cols=250 Identities=18% Similarity=0.196 Sum_probs=202.8
Q ss_pred CcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEeccc
Q 012044 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (472)
++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344555566655555566678899999999999998888899999999999999999876543 88999999999999
Q ss_pred CCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHH
Q 012044 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (472)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (472)
|.+.+ +...++|+.|++++|.+..... ..+++|++|++++|.++...+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~-----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQE-----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEE-----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccc-----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 98753 3345899999999999877653 346899999999999998777778889999999999999998655
Q ss_pred HHH-hCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccChhHHhhccCCcc
Q 012044 366 AAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLKPLKN 439 (472)
Q Consensus 366 ~~l-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 439 (472)
..+ ..+++|++|++++|.+.+... ...+++|++|++++|.++.. .+++|+.|++++|.+... +..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCC
Confidence 555 478999999999999987632 23589999999999999876 679999999999999864 566888999
Q ss_pred ccccccccccCCHHHHHHhhccCCCCceec
Q 012044 440 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 469 (472)
Q Consensus 440 L~~L~l~~~~l~~~~~~~l~~~~~~~l~~l 469 (472)
|+.|++++|+++...+..+.. .+++++.+
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~-~~~~L~~l 267 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFS-KNQRVQTV 267 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHH-TCHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHh-ccccceEE
Confidence 999999999999555544432 45555443
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3e-21 Score=181.17 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=100.7
Q ss_pred hcCCCCcEEeccCCcCCh----hHHHHhhcCCCCcEEEccccccChhHHHHh----cCC---------CCccEEecccCC
Q 012044 225 SALGSLFYLNLNRCQLSD----DGCEKFSKIGSLKVLNLGFNEITDECLVHL----KGL---------TNLESLNLDSCG 287 (472)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l----~~~---------~~L~~L~l~~~~ 287 (472)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445555555555555544 233344555555555555555543222222 222 566666666665
Q ss_pred CCHH-HH---HHhhCCCCCCEEecCCCccCchh----HH-HhhCCCCCCEeeecCCCCC----hhHHHhhcCCCCCCEEE
Q 012044 288 IGDE-GL---VNLTGLCNLKCLELSDTQVGSSG----LR-HLSGLTNLESINLSFTGIS----DGSLRKLAGLSSLKSLN 354 (472)
Q Consensus 288 ~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~ 354 (472)
++.. .+ ..+..+++|+.|++++|.++... .. .+..+++|+.|++++|.++ ...+..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 5422 11 23445556666666666555321 12 3445666666666666664 22344455666677777
Q ss_pred cCCCCCChHHH----HHHh--CCCCCCEEeCCCCccCh----hHHHHh-hcCCCCcEEEecCCccccc
Q 012044 355 LDARQITDTGL----AALT--SLTGLTHLDLFGARITD----SGAAYL-RNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 355 l~~~~~~~~~~----~~l~--~~~~L~~L~l~~~~l~~----~~~~~l-~~~~~L~~L~l~~~~~~~~ 411 (472)
+++|.+++.+. ..+. .+++|+.|++++|.+++ ..+..+ .++++|++|++++|.++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 77666665532 2332 26667777777776666 234444 4567777777777766654
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.3e-22 Score=185.73 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=172.1
Q ss_pred EEeeccccChhhhhhccCCCCCcEEEecCCCCChhHH----HhhhcCC-CCcEEeccCCcCChhHHHHhhcC-----CCC
Q 012044 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GSL 254 (472)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L 254 (472)
+.++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677778887767666666779999999998877555 6677787 89999999998877655555543 889
Q ss_pred cEEEccccccChhHHHH----hcCC-CCccEEecccCCCCHHHHHHh----hC-CCCCCEEecCCCccCchhH----HHh
Q 012044 255 KVLNLGFNEITDECLVH----LKGL-TNLESLNLDSCGIGDEGLVNL----TG-LCNLKCLELSDTQVGSSGL----RHL 320 (472)
Q Consensus 255 ~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~l 320 (472)
++|++++|.+++..+.. +..+ ++|++|++++|.+++.....+ .. .++|++|++++|.++.... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999988877654443 4444 788999998888765544433 33 3588888888888775433 333
Q ss_pred hCCC-CCCEeeecCCCCChhHHHh----hcCC-CCCCEEEcCCCCCChHH----HHHHhC-CCCCCEEeCCCCccChhHH
Q 012044 321 SGLT-NLESINLSFTGISDGSLRK----LAGL-SSLKSLNLDARQITDTG----LAALTS-LTGLTHLDLFGARITDSGA 389 (472)
Q Consensus 321 ~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~l~~~~~ 389 (472)
...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+++.+ +..+.. .++|++|++++|.+.+.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4554 8888888888887655443 3345 48888888888887632 334444 4588888888888877554
Q ss_pred HH----hhcCCCCcEEEecCCccccc-------------ccccCceeeccCCccChh
Q 012044 390 AY----LRNFKNLRSLEICGGGLTDA-------------GLTGLVSLNVSNSRITSA 429 (472)
Q Consensus 390 ~~----l~~~~~L~~L~l~~~~~~~~-------------~~~~L~~L~l~~n~~~~~ 429 (472)
.. +..+++|++|++++|.+... .+++|+.|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 35667888888888773322 456677777777777664
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.2e-23 Score=191.21 Aligned_cols=157 Identities=24% Similarity=0.271 Sum_probs=65.7
Q ss_pred CCCCEEEeeccccChhhhhhc--cCCCCCcEEEecCCCCChhHHHhhhcC-----CCCcEEeccCCcCChhHHHHhhcCC
Q 012044 180 TNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIG 252 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~ 252 (472)
++|++|++++|.+++..+..+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..++.++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 344444444444433222222 3444444444444444332 2222222 4455555555444444334444455
Q ss_pred CCcEEEccccccChh--HHHHh--cCCCCccEEecccCCCCH---HHHHHhhCCCCCCEEecCCCccCchhH-HHhhCCC
Q 012044 253 SLKVLNLGFNEITDE--CLVHL--KGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLT 324 (472)
Q Consensus 253 ~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~ 324 (472)
+|++|++++|.+.+. .+..+ ..+++|++|++++|.+.. .....+..+++|+.|++++|.+....+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 555555555544332 12222 445555555555555541 111222344455555555554443221 1222334
Q ss_pred CCCEeeecCCCCC
Q 012044 325 NLESINLSFTGIS 337 (472)
Q Consensus 325 ~L~~L~l~~~~~~ 337 (472)
+|++|++++|.++
T Consensus 254 ~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 254 QLNSLNLSFTGLK 266 (312)
T ss_dssp TCCEEECTTSCCS
T ss_pred CCCEEECCCCccC
Confidence 4444444444443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.1e-23 Score=197.25 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=119.5
Q ss_pred CCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEE
Q 012044 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258 (472)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 258 (472)
+++|+.|++++|.++...+..|..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... ...++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEE
Confidence 3466777777666666555566666667777776666654332 55666666666666655432 1235555666
Q ss_pred ccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCCh
Q 012044 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (472)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (472)
+++|.+.+..+ ..+++|++|++++|.+.+..+..++.+++|+.|++++|.++...+..+.
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----------------- 165 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----------------- 165 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-----------------
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-----------------
Confidence 65555544321 2234555555555555443333344444555555555544443333332
Q ss_pred hHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----cc
Q 012044 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GL 413 (472)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~ 413 (472)
..+++|++|++++|.+++. .....+++|+.|++++|.+++.++. +..+++|+.|++++|.++.. .+
T Consensus 166 ------~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 166 ------ASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp ------GGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred ------hhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccC
Confidence 1344444444444444432 1122344555555555555443332 44445555555555554433 34
Q ss_pred ccCceeeccCCccC-hhHHhhccCCccccccccc
Q 012044 414 TGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLE 446 (472)
Q Consensus 414 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~ 446 (472)
++|+.|++++|++. +..+..+..++.|+.++++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 55666666666665 3344455666666666664
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=5.3e-22 Score=184.37 Aligned_cols=251 Identities=20% Similarity=0.225 Sum_probs=169.1
Q ss_pred EeecCCCCCCccccccccCCCCCCEEEeeccccChhhh----hhccCCC-CCcEEEecCCCCChhHHHhhhcC-----CC
Q 012044 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI----AYLKGLQ-KLTLLNLEGCPVTAACLDSLSAL-----GS 229 (472)
Q Consensus 160 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 229 (472)
+.++++ ..++..+..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 345542 3444444445555668888888888776655 6667777 88888888888776555555543 88
Q ss_pred CcEEeccCCcCChhHHHH----hhcC-CCCcEEEccccccChhHHHH----hcC-CCCccEEecccCCCCHHH----HHH
Q 012044 230 LFYLNLNRCQLSDDGCEK----FSKI-GSLKVLNLGFNEITDECLVH----LKG-LTNLESLNLDSCGIGDEG----LVN 295 (472)
Q Consensus 230 L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~----~~~ 295 (472)
|++|++++|.+....+.. +..+ ++|++|++++|.+++..... +.. +++|++|++++|.+++.. ...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888876555443 3444 78888888888877654433 334 358888888888776422 333
Q ss_pred hhCCC-CCCEEecCCCccCchhHHH----hhCC-CCCCEeeecCCCCChhHH----HhhcC-CCCCCEEEcCCCCCChHH
Q 012044 296 LTGLC-NLKCLELSDTQVGSSGLRH----LSGL-TNLESINLSFTGISDGSL----RKLAG-LSSLKSLNLDARQITDTG 364 (472)
Q Consensus 296 ~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~~~~~ 364 (472)
+...+ +|+.|++++|.++...+.. +..+ ++|++|++++|.+++... ..+.. .++|++|++++|.+++.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45554 8888888888877655543 3445 488888888888776332 23333 458888888888887654
Q ss_pred HHH----HhCCCCCCEEeCCCCccChhHH-------HHhhcCCCCcEEEecCCccccc
Q 012044 365 LAA----LTSLTGLTHLDLFGARITDSGA-------AYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 365 ~~~----l~~~~~L~~L~l~~~~l~~~~~-------~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
... +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 433 3566888888888887333222 2345667788888888887765
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=5.5e-21 Score=187.75 Aligned_cols=261 Identities=19% Similarity=0.092 Sum_probs=165.1
Q ss_pred CCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEE
Q 012044 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (472)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (472)
.++++|+++++.. ...+..+. ++|++|++++|. +... +. .+++|+.|++++|.++.... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCC-CC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCC-CC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 4688999988753 34444443 789999998865 3322 22 56788999998888775332 668888888
Q ss_pred ecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCH
Q 012044 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (472)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (472)
+++|.+..... .+++|+.|++++|.+..... .+++|++|++++|.+++. + ..+++|+.|++++|.+..
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-P---ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-C---CccCCCCEEECCCCCCCC
Confidence 88887765322 56778888888887765321 247788888887776642 1 234667777777776654
Q ss_pred HHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhC
Q 012044 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370 (472)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 370 (472)
.. ..+++|+.|++++|.+...+ ...++|+.|++++|.++... ..+++|++|++++|.++... ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 22 34567777777777665422 13466777777777665422 12356777777777666532 34
Q ss_pred CCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc-----ccccCceeeccCCccChhHHhhcc
Q 012044 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLK 435 (472)
Q Consensus 371 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~ 435 (472)
+++|+.|++++|.++..+. .+++|+.|++++|.++.. .+++|+.|++++|++.+..+..+.
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 5667777777776665322 456666666666666543 455666666666666665555443
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.9e-21 Score=187.32 Aligned_cols=233 Identities=17% Similarity=0.128 Sum_probs=105.0
Q ss_pred CCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEE
Q 012044 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (472)
Q Consensus 107 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 186 (472)
+|++|+|++|.+ ....+..|.++++|++|++++|......+ +..+++|++|++++|. +.. +...++|+.|+
T Consensus 35 ~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~-----l~~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQE-----LLVGPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCC-CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEE-----EEECTTCCEEE
T ss_pred CccEEEeeCCcC-CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCC-----CCCCCCcCEEE
Confidence 555555555543 22334455555555555555543221111 4445555555555432 111 11124444444
Q ss_pred eeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccCh
Q 012044 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266 (472)
Q Consensus 187 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 266 (472)
+++|.++...+. .+++|+.|++++|.+....+..++.+++|+.|++++|.+++
T Consensus 106 L~~N~l~~~~~~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 106 AANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCSSCCCCEEEC---------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CcCCcCCCCCcc---------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 444444432221 23444444444444444433344444444455554444444
Q ss_pred hHHHHhc-CCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhc
Q 012044 267 ECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (472)
Q Consensus 267 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (472)
..+..+. .+++|++|++++|.+.+. .....+++|+.|++++|.++..++. +..+++|+.|++++|.++. .+..+.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred cChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhc
Confidence 3333332 344555555555544332 1122344555555555555443322 4455556666665555554 233344
Q ss_pred CCCCCCEEEcCCCCCC-hHHHHHHhCCCCCCEEeC
Q 012044 346 GLSSLKSLNLDARQIT-DTGLAALTSLTGLTHLDL 379 (472)
Q Consensus 346 ~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l 379 (472)
.+++|+.|++++|.+. +..+..+..++.|+.+++
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 5555666666665555 223333444444444433
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.1e-21 Score=175.24 Aligned_cols=199 Identities=24% Similarity=0.225 Sum_probs=102.6
Q ss_pred CCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecC
Q 012044 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (472)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (472)
+++.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 90 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------------------ 90 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc------------------
Confidence 46666666666555444455555556666665555544333344455555555555554443
Q ss_pred CCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHH-HHHHhCCCCCCEEeCCCCccChh
Q 012044 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~ 387 (472)
..+..+..+++|++|++++|.+.......+..+++|++|++++|.++... +..+..+++|++|++++|.+.+.
T Consensus 91 ------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 91 ------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 33333444444555555444444433333444555555555555544321 33444555555555555555544
Q ss_pred HHHHhhcCCCCc----EEEecCCccccc-----ccccCceeeccCCccChhHHhhccCCccccccccccccCC
Q 012044 388 GAAYLRNFKNLR----SLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 388 ~~~~l~~~~~L~----~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~ 451 (472)
.+..+..+++|+ .|++++|.++.. ...+|+.|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 333333333333 555555555443 2235666666666666554445566666667776666654
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=5.3e-20 Score=180.74 Aligned_cols=260 Identities=16% Similarity=0.057 Sum_probs=203.9
Q ss_pred CCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEE
Q 012044 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (472)
Q Consensus 106 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 185 (472)
.++++|+++++.+. .+|..+. ++|++|++++|.. ...+. .+++|++|++++|. +... +. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~l-p~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQ-LTSL-PV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CSCC-CC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCc-CCcC-CC---CCCCCCEE
Confidence 46999999999863 4444443 7999999999864 33333 57899999999965 4322 22 67899999
Q ss_pred EeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccC
Q 012044 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (472)
Q Consensus 186 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (472)
++++|.++.... .+++|++|++++|.+.... . .+++|++|++++|.+.... ...++|+.|++++|.++
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence 999998876432 5689999999999887632 2 3589999999999887532 24578999999999887
Q ss_pred hhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhc
Q 012044 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (472)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (472)
.. + ..+++|+.|++++|.+.... ...++|+.|.+++|.+.... ..+++|+.|++++|.++... .
T Consensus 175 ~l-~---~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~ 238 (622)
T 3g06_A 175 SL-P---MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----V 238 (622)
T ss_dssp CC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----C
T ss_pred CC-c---ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----C
Confidence 63 2 56789999999999886421 23579999999999887543 24589999999999888633 4
Q ss_pred CCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
.+++|++|++++|.++.... .+++|+.|++++|.++. .|..+..+++|+.|++++|.+++.
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCc
Confidence 66899999999999886422 57899999999999995 466789999999999999999876
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=4.9e-21 Score=170.36 Aligned_cols=209 Identities=21% Similarity=0.196 Sum_probs=146.4
Q ss_pred cCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEE
Q 012044 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305 (472)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (472)
.+++|+.|.+.++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 444555555555554432 1344555666666666555542 245566666666666666654444445666777777
Q ss_pred ecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccC
Q 012044 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (472)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 385 (472)
++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 77777766655555677788888888888777666656677888888888888887665555677888889999888888
Q ss_pred hhHHHHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHHhhccCCcc
Q 012044 386 DSGAAYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGLRHLKPLKN 439 (472)
Q Consensus 386 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 439 (472)
+..+..+..+++|+.|++++|.+.. .++.|+.++++.|.+.+..|..+..++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~-~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDC-TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC-CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCccc-cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8777777888899999998887764 4778999999999998887777665554
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=9.1e-21 Score=169.30 Aligned_cols=203 Identities=23% Similarity=0.211 Sum_probs=96.0
Q ss_pred CccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEe
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 137 (472)
++++|+++++.+++..+..++++++|++|++++| .+....+..|..+++|++|++++|.+ ....+..|.++++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEE
Confidence 4555555555555444444555555555555554 44444444455555555555555543 222334445555555555
Q ss_pred ccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChh-hhhhccCCCCCcEEEecCCCC
Q 012044 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPV 216 (472)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 216 (472)
+++|.........+..+++|++|+++ +|.+... .+..+..+++|++|++++|.+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~-------------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVA-------------------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECC-------------------------SSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCccccCchhcccCCCCCEEECc-------------------------CCccceecCchhhccCCCCCEEECCCCCC
Confidence 55543332222234444455555554 4444332 133444445555555555444
Q ss_pred ChhHHHhhhcCCCCc----EEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCC
Q 012044 217 TAACLDSLSALGSLF----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (472)
Q Consensus 217 ~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (472)
....+..+..+++|+ .+++++|.+....+..+ ...+|+.|++++|.++...+..+..+++|++|++++|.+
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 443333333333333 45555555443332222 222455555555555543333345555556666555544
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.3e-20 Score=167.47 Aligned_cols=207 Identities=20% Similarity=0.171 Sum_probs=130.0
Q ss_pred HHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCC
Q 012044 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131 (472)
Q Consensus 52 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~ 131 (472)
.+......+.++++++.++. +|..+ .+++++|++++| .+....+..|..+++|++|++++|.+ ....+..|.+++
T Consensus 11 ~C~c~~~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~ 85 (270)
T 2o6q_A 11 VCSCNNNKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELK 85 (270)
T ss_dssp SBEEETTTTEEECTTSCCSS-CCSCC--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCT
T ss_pred CCEeCCCCCEEEccCCCCCc-cCCCC--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCC
Confidence 33333467788888877763 34322 257888888886 57766666777888888888888764 333334456777
Q ss_pred CCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEe
Q 012044 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (472)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (472)
+|++|++++|......+..+..+++|++|+++++. +....+..+..+++|+.|++++|.++......+..+++|++|++
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 78888887765443333455667777777777633 44344455566677777777776666555555666666666666
Q ss_pred cCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcccccc
Q 012044 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (472)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (472)
++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 66666555444555666666666666665544444455556666666665543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=169.38 Aligned_cols=199 Identities=19% Similarity=0.112 Sum_probs=144.8
Q ss_pred CCCcEEEccccccChhHHHHh--cCCCCccEEecccCCCCHH----HHHHhhCCCCCCEEecCCCccCchhHHHhhCCCC
Q 012044 252 GSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDE----GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325 (472)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 325 (472)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. ....+..+++|+.|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456666666666555444444 5667777777777766541 1234456778888888888877766677778888
Q ss_pred CCEeeecCCCCChhHH----HhhcCCCCCCEEEcCCCCCChHHH--H-HHhCCCCCCEEeCCCCccChhHHHHhhcC---
Q 012044 326 LESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGL--A-ALTSLTGLTHLDLFGARITDSGAAYLRNF--- 395 (472)
Q Consensus 326 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~~--- 395 (472)
|++|++++|.+..... ..+..+++|++|++++|.++.... . .++.+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 8888888887764321 112467889999999998874322 2 24678999999999999888766555555
Q ss_pred CCCcEEEecCCccccc---ccccCceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 396 KNLRSLEICGGGLTDA---GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 396 ~~L~~L~l~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
++|++|++++|.++.. ..++|+.|++++|++.+. ..+..+++|+.|++++|++++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCC
Confidence 6999999999988865 457999999999999874 225788999999999999874
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=7.8e-21 Score=169.07 Aligned_cols=204 Identities=23% Similarity=0.184 Sum_probs=100.6
Q ss_pred CCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEE
Q 012044 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (472)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (472)
.+++|+.|++.++.+.. ...+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 33444444444444432 12244445555555555544432 234445555555555555444433344455555555
Q ss_pred EccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCC
Q 012044 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (472)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (472)
++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 55555544433333445555555555555544333333444555555555555555444444455556666666666555
Q ss_pred hhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHh
Q 012044 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (472)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 392 (472)
+..+..+..+++|++|++++|.+.. .+++|+.++++.|.+.+..|..+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcc
Confidence 5444445555566666666555442 24455555555555555444433
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.3e-20 Score=164.88 Aligned_cols=180 Identities=23% Similarity=0.216 Sum_probs=77.1
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEc
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (472)
++++.|+++++.++...+..|.++++|++|++++|.+.......+..+++|++|++++|.+....+..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------ 104 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV------------ 104 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT------------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH------------
Confidence 34555555555555444444555555555555555444333233344444444444444443332223
Q ss_pred cccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChh
Q 012044 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (472)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (472)
+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++..
T Consensus 105 ------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 105 ------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp ------------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ------------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 33344444444444433322222233344444444444443333333334444444444444444433
Q ss_pred HHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc
Q 012044 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 340 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (472)
.+..+..+++|++|++++|.++......+..+++|+.|++++|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 33333344444444444444443322233344444444444443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.2e-19 Score=162.53 Aligned_cols=191 Identities=28% Similarity=0.380 Sum_probs=153.5
Q ss_pred hhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCC
Q 012044 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (472)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (472)
+..+++|+.|+++++.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 345778999999998877542 57788999999999998876544 78889999999999987654 3577888999
Q ss_pred EEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc
Q 012044 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (472)
.|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++... +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999887654 37788899999999988876544 7778899999999988887533 7788899999999998
Q ss_pred cChhHHHHhhcCCCCcEEEecCCccccc----ccccCceeeccCCccCh
Q 012044 384 ITDSGAAYLRNFKNLRSLEICGGGLTDA----GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 384 l~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~L~~L~l~~n~~~~ 428 (472)
+.+..+ +..+++|++|++++|.+++. .+++|+.|++++|++.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 887654 77888888888888888766 67788888888887765
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=165.80 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=123.1
Q ss_pred CCCEEEeeccccChhhhhh---ccCCCCCcEEEecCCCCChhHHHhh--hcCCCCcEEeccCCcCChhH----HHHhhcC
Q 012044 181 NLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDG----CEKFSKI 251 (472)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~l~~~ 251 (472)
.++.+.+....++...... +..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.... ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4555555555444322111 1223456666666666555444444 55666666666666655321 1233456
Q ss_pred CCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHH----HhhCCCCCCEEecCCCccCchhHH---HhhCCC
Q 012044 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLR---HLSGLT 324 (472)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~ 324 (472)
++|++|++++|.+....+..+..+++|++|++++|.+.+.... .+..+++|++|++++|.++..... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 6677777776666555555566667777777777665442111 123556677777777666532221 235566
Q ss_pred CCCEeeecCCCCChhHHHhhcCC---CCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEE
Q 012044 325 NLESINLSFTGISDGSLRKLAGL---SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401 (472)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 401 (472)
+|++|++++|.+.+..+..+..+ ++|++|++++|.++.. +..+ .++|+.|++++|++++. +. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 77777777776665544444443 5677777777766632 2222 25677777777766653 11 3455666666
Q ss_pred EecCCccc
Q 012044 402 EICGGGLT 409 (472)
Q Consensus 402 ~l~~~~~~ 409 (472)
++++|.++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 66655554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=7.4e-19 Score=159.05 Aligned_cols=195 Identities=30% Similarity=0.363 Sum_probs=107.0
Q ss_pred cCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcE
Q 012044 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (472)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (472)
..+++|+.|++.++.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3456677777776666542 245666666666666666655432 55666666666666655442 13445555555
Q ss_pred EEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCC
Q 012044 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (472)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (472)
|++++|.+.+.. .+..++ +|+.|++++|.+..... +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLS------------------------NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECTTSCCCCCG--GGTTCT------------------------TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCC------------------------CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 555555444321 144444 45555555444443322 44555555555555555
Q ss_pred ChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++..
T Consensus 164 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 164 SDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 54322 4555666666666665554322 5556666666666666665432 55666666666666665543
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=5.9e-19 Score=158.04 Aligned_cols=203 Identities=21% Similarity=0.165 Sum_probs=97.3
Q ss_pred cccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCC
Q 012044 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (472)
Q Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 230 (472)
+..++++++++++++. +.. .+..+ .++++.|++++|.++...+..+..+++|++|++++|.+..... ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSC-CSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCC-CCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 3445566666665532 221 11111 1455566665555555444555555555555555555443211 1344444
Q ss_pred cEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCC
Q 012044 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (472)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (472)
+.|++++|.+.. .+..+..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~-------------------------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 80 GTLDLSHNQLQS-------------------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CEEECCSSCCSS-------------------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-------------------------CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 444444444432 1222334444555555554444333333444455555555555
Q ss_pred ccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccC
Q 012044 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (472)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 385 (472)
.+.......+..+++|+.|++++|.++......+..+++|++|++++|.++.. +..+...++|+.+++++|.+.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 54444444444555555555555555544444444555555555555555532 223334455666666655443
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=3.8e-19 Score=159.30 Aligned_cols=205 Identities=20% Similarity=0.100 Sum_probs=155.1
Q ss_pred hccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCc
Q 012044 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278 (472)
Q Consensus 199 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (472)
.++++++++++++.++.+... +..+ .++++.|++++|.+....+..|..+++|+.|++++|.++.... ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 357788899999998887654 2222 3688999999999887777788889999999999988775322 2678889
Q ss_pred cEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCC
Q 012044 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (472)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (472)
++|++++|.+... +..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999988877632 334567788888888888887766667778888888888888887766666677788888888888
Q ss_pred CCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccc
Q 012044 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (472)
Q Consensus 359 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (472)
+++......+..+++|+.|++++|++... |..+...+.|+.+++++|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 88765555567788888888888888754 4445556778888888776643
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=1.7e-19 Score=157.27 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=102.3
Q ss_pred CCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCc-CChhHHHHhhcCCCCcEEEccc-cccChhHHHHhcCCCCccEE
Q 012044 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 281 (472)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 281 (472)
+++++|+++++.+....+..+..+++|+.|++++|. +....+..|..+++|++|++++ +.+....+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478888888888877655667778888888888886 6665555677777777777776 66665444556677777777
Q ss_pred ecccCCCCHHHHHHhhCCCCCC---EEecCCC-ccCchhHHHhhCCCCCC-EeeecCCCCChhHHHhhcCCCCCCEEEcC
Q 012044 282 NLDSCGIGDEGLVNLTGLCNLK---CLELSDT-QVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (472)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (472)
++++|.+.... .+..+++|+ .|++++| .+.......+..+++|+ .|++++|.++......+.. ++|++|+++
T Consensus 111 ~l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 77777665421 144444454 5555555 44444444444455555 5555555444322222222 344444444
Q ss_pred CCC-CChHHHHHHhCC-CCCCEEeCCCCccC
Q 012044 357 ARQ-ITDTGLAALTSL-TGLTHLDLFGARIT 385 (472)
Q Consensus 357 ~~~-~~~~~~~~l~~~-~~L~~L~l~~~~l~ 385 (472)
+|. ++......+..+ ++|+.|++++|.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 442 443323333344 44444444444444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=2.1e-19 Score=156.67 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=157.8
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC-CChhHHHhhhcCCCCcEEeccC-CcCChhHHHHhhcCCCCcEE
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVL 257 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 257 (472)
++|+.|+++++.++......|..+++|++|++++|. +....+..+..+++|++|++++ |.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999888777778889999999999996 7766566788899999999998 88887766778889999999
Q ss_pred EccccccChhHHHHhcCCCCcc---EEecccC-CCCHHHHHHhhCCCCCC-EEecCCCccCchhHHHhhCCCCCCEeeec
Q 012044 258 NLGFNEITDECLVHLKGLTNLE---SLNLDSC-GIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLS 332 (472)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (472)
++++|.+.+ .+. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|.+...+...+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999988876 333 77778887 9999998 77766555677888999 9999999887655555545 789999999
Q ss_pred CCC-CChhHHHhhcCC-CCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCC
Q 012044 333 FTG-ISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (472)
Q Consensus 333 ~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 382 (472)
+|. ++...+..+..+ ++|++|++++|.++..... .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 994 887666777888 8999999999988764322 5678888888775
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=3.6e-18 Score=149.96 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=78.5
Q ss_pred CCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeec
Q 012044 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332 (472)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (472)
.++.|+++++.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 34444444444443333334444444444444444443333334444455555555554444444444455555555555
Q ss_pred CCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
+|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555444444445555555555555555443334555555666666666555554445555555555555555543
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=1.5e-17 Score=145.98 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=28.1
Q ss_pred CCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccCh
Q 012044 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 386 (472)
.+++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 33444444444444433333333444444444444444443333334444555555555554443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=5.4e-17 Score=145.47 Aligned_cols=174 Identities=30% Similarity=0.313 Sum_probs=138.3
Q ss_pred hhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCC
Q 012044 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (472)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (472)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 44677899999999887755 247788999999999998876544 78889999999999888753 3477888999
Q ss_pred EEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc
Q 012044 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (472)
.|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999998887764 3567888899999998888765 457778889999998888887543 7788889999998888
Q ss_pred cChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 384 ITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 384 l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
+++.. .+..+++|+.|++++|.++..
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCCh--hhccCCCCCEEECcCCcccCC
Confidence 88753 377788888888888877665
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2e-16 Score=141.76 Aligned_cols=173 Identities=30% Similarity=0.382 Sum_probs=141.3
Q ss_pred cCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccE
Q 012044 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (472)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (472)
..+++|++|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4567899999998887664 357888999999999998876554 78889999999999988763 34788899999
Q ss_pred EecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCC
Q 012044 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (472)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (472)
|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999988754 4577888999999999988765 467788999999999998887554 77889999999999988
Q ss_pred ChHHHHHHhCCCCCCEEeCCCCccChh
Q 012044 361 TDTGLAALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 361 ~~~~~~~l~~~~~L~~L~l~~~~l~~~ 387 (472)
++. ..+..+++|+.|++++|.+...
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred CCC--hhhccCCCCCEEECcCCcccCC
Confidence 875 3478889999999999887664
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=9.4e-17 Score=135.23 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=63.2
Q ss_pred hhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCc
Q 012044 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399 (472)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 399 (472)
+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 33444444444444433321 1333444444444444444443333344444444444444444444444444444555
Q ss_pred EEEecCCc-cccc----ccccCceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 400 SLEICGGG-LTDA----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 400 ~L~l~~~~-~~~~----~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
+|++++|. ++.. .+++|+.|++++|.+.+.. .+..+++|++|++++|++..
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 55554444 3332 4555666666666666532 56677888888888887654
No 98
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1e-16 Score=146.71 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCccEEecccCCCCHHHHHHhh-CCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCC-E
Q 012044 275 LTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK-S 352 (472)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~ 352 (472)
..++..+.+.+. +.......+. .+++|+.+++.+|.+...+...|.+|++|+.++++.+ +.......|.+|++|+ +
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 455666666654 3333333332 3677888888877777777777778888888888775 6666666777778887 8
Q ss_pred EEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEE
Q 012044 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (472)
Q Consensus 353 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 402 (472)
+.+.+ .++.....+|.+|++|+.+++.++.+.......|.++++|+.+.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 88777 56655556777788888888877777777777777777777765
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=3.3e-17 Score=139.46 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=122.1
Q ss_pred CCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEc
Q 012044 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (472)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (472)
+++++|+++++.+.......+..+++|+.|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666665444444566677777777777766655555667788888888888777655555677888888888
Q ss_pred CCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHHhhcc
Q 012044 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGLRHLK 435 (472)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 435 (472)
++|.++......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.. .++.|+.|+++.|.+.+..|..+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-CCCCHHHHHHHHHhCCceeeccCc
Confidence 8888876655557778889999999888887766667888899999999887654 478899999999999988887776
Q ss_pred CCcc
Q 012044 436 PLKN 439 (472)
Q Consensus 436 ~~~~ 439 (472)
.++.
T Consensus 187 ~l~~ 190 (208)
T 2o6s_A 187 SVAP 190 (208)
T ss_dssp SBCT
T ss_pred cccC
Confidence 6554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=4.1e-16 Score=153.08 Aligned_cols=174 Identities=30% Similarity=0.311 Sum_probs=140.3
Q ss_pred hhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCC
Q 012044 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (472)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (472)
+..+++|+.|+++++.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 456788999999998877543 57888999999999998876544 78889999999999987653 3577888999
Q ss_pred EEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCc
Q 012044 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (472)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 383 (472)
.|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999887764 3577888999999999888775 567788899999999988887644 7888899999999988
Q ss_pred cChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 384 ITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 384 l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
+.+. ..+..+++|+.|++++|.+...
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8875 2477888888888888877665
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=1.2e-15 Score=149.65 Aligned_cols=175 Identities=30% Similarity=0.374 Sum_probs=151.1
Q ss_pred ccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCcc
Q 012044 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (472)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (472)
+..+++|+.|++.++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 35678899999999988764 368899999999999999887654 88999999999999988763 3688999999
Q ss_pred EEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCC
Q 012044 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (472)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (472)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988763 4588899999999999998875 567899999999999999987655 8889999999999999
Q ss_pred CChHHHHHHhCCCCCCEEeCCCCccChhH
Q 012044 360 ITDTGLAALTSLTGLTHLDLFGARITDSG 388 (472)
Q Consensus 360 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 388 (472)
+.+. ..+..+++|+.|++++|.+.+.+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 9885 46889999999999999887753
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=3.3e-15 Score=125.72 Aligned_cols=149 Identities=25% Similarity=0.330 Sum_probs=75.5
Q ss_pred CCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEE
Q 012044 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (472)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (472)
++|++|++++|... ..+ .+..+++|++|++++|. .. .+..+..+++|+.|++++|.++...+..++.+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-AT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444544443322 111 34445555555555541 21 223445555666666666655554455555566666666
Q ss_pred ecCCCCChhHHHhhhcCCCCcEEeccCCc-CChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCC
Q 012044 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (472)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (472)
+++|.+....+..+..+++|+.|++++|. +.... .+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 66666555445555556666666666655 43321 3555555666666555554421 345555555555555544
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.5e-16 Score=145.59 Aligned_cols=287 Identities=13% Similarity=0.058 Sum_probs=171.5
Q ss_pred CCCCCeeecCCccccChhhHHHhhC-CCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCccccccccccccc-----
Q 012044 80 CSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG----- 153 (472)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----- 153 (472)
+++++.|.+++ .+.......+.. +++|++|||++|.+...... -+.++.++.+....+ ......+..
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc---ccCHHHhccccccc
Confidence 44566666666 244444555544 56667777766654300000 011112233333332 111233445
Q ss_pred ---CCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC----CChhHHHhhhc
Q 012044 154 ---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----VTAACLDSLSA 226 (472)
Q Consensus 154 ---l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~l~~ 226 (472)
|++|+.+++.. .+......+|..|++|+.+++..+.+.......|..+.++..+...... ........|..
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777765 3444555667777777777777776666666667666666655544311 11111223445
Q ss_pred CCCCc-EEeccCCcCChhHHHHhh---cCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCC
Q 012044 227 LGSLF-YLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302 (472)
Q Consensus 227 ~~~L~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (472)
+..|+ .+.+..... .....+. ...++..+.+.+.-...........+++|+++++.+|.+.......|.++.+|
T Consensus 175 ~~~L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 175 GEPLETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp SCCCEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccccceeEEecCCCc--HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 56665 444433221 1111111 24566666666542222222222347888888888877776666678888888
Q ss_pred CEEecCCCccCchhHHHhhCCCCCC-EeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeC
Q 012044 303 KCLELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (472)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 379 (472)
+.+.+..+ +......+|.+|++|+ .+.++. .++......|.+|++|+++++.++.+......+|.++++|+.+..
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88888876 6666677788888898 888887 677767778888889999998888888777778888888888764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=7.4e-16 Score=131.07 Aligned_cols=158 Identities=21% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcc
Q 012044 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (472)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (472)
+|+.|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44455555444444333334444555555555544443333334444555555555555444333334455555555555
Q ss_pred ccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhH
Q 012044 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (472)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 340 (472)
+|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+. ..++.|++|++..+.+++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 55544333333445555555555555544333333444555555555555432 23455555555555555444
Q ss_pred HHhhc
Q 012044 341 LRKLA 345 (472)
Q Consensus 341 ~~~~~ 345 (472)
+..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44333
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.4e-15 Score=140.41 Aligned_cols=240 Identities=18% Similarity=0.088 Sum_probs=129.2
Q ss_pred EEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEec-c
Q 012044 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-E 139 (472)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l-~ 139 (472)
+++.++++++ .+|..+ .+++++|++++| .++......|.++++|++|+|++|.+.....+.+|.++++++++.. .
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4555555554 233322 246677777765 5666555566666777777777666533333345666666655433 3
Q ss_pred CcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeecc-ccChhhhhhccCC-CCCcEEEecCCCCC
Q 012044 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGL-QKLTLLNLEGCPVT 217 (472)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 217 (472)
.+......+..+..+++|++|+++++. +.......+....++..+++.++ .+.......|..+ ..++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 333222233456667777777776643 33233333334445566666543 4444444444444 35667777777666
Q ss_pred hhHHHhhhcCCCCcEEeccC-CcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHh
Q 012044 218 AACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (472)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (472)
..... .....+|+.+.+.+ +.+.......|..+++|+.|++++|.++.... ..+.+|+.|.+.++.-....+ .+
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTCCCCC-CT
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCCcCcCC-Cc
Confidence 54322 22345677777754 44554444566777777777777777664322 224455555554442111111 35
Q ss_pred hCCCCCCEEecCCC
Q 012044 297 TGLCNLKCLELSDT 310 (472)
Q Consensus 297 ~~~~~L~~L~l~~~ 310 (472)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 56677777777643
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=1.5e-15 Score=129.95 Aligned_cols=146 Identities=21% Similarity=0.237 Sum_probs=106.1
Q ss_pred cEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCC
Q 012044 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (472)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (472)
+.++.+++.+... +..+ .++++.|++++|.+.......+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666655432 1112 257888888888877766666777888888888888887766777778888888888888
Q ss_pred CCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccC
Q 012044 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRIT 427 (472)
Q Consensus 359 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~ 427 (472)
.++......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.. .+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 87765555567778888888888888877777777778888888887777655 4566777777777654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.3e-15 Score=134.13 Aligned_cols=167 Identities=23% Similarity=0.320 Sum_probs=130.8
Q ss_pred CCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEee
Q 012044 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (472)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (472)
+.++..++++.+.+.+.. .+..+++|++|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555666776665432 3566789999999999876543 57788999999999998887655 78899999999
Q ss_pred ecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccc
Q 012044 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (472)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (472)
+++|.+++... +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 99998876332 333 8899999999998874 45788899999999999988853 57888999999999998877
Q ss_pred c----ccccCceeeccCCccChhH
Q 012044 411 A----GLTGLVSLNVSNSRITSAG 430 (472)
Q Consensus 411 ~----~~~~L~~L~l~~n~~~~~~ 430 (472)
. .+++|+.|++++|++....
T Consensus 165 ~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred hHHhccCCCCCEEeCCCCcccCCc
Confidence 6 6788888889888877653
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.6e-15 Score=140.51 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=85.8
Q ss_pred cEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhh-CCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecC
Q 012044 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (472)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (472)
+.++++++.+.. .|..+ .+.++.|++++|.+.......+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666655543 22211 23466666666666554444444 566666666666666655555556666666666666
Q ss_pred CCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHh---hcCCCCcEEEecCCcccc
Q 012044 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 410 (472)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~~~~~~ 410 (472)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66665544455566666666666666665444555566666666666666665444333 334555555555554443
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=9.4e-16 Score=141.49 Aligned_cols=223 Identities=15% Similarity=0.089 Sum_probs=105.8
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEec-CCCCCCCHHHHHHHhCCCCCcE
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
+++++|+|++|.++...+..|+++++|++|++++|.-........|.++++++++.. ..|. +....+..|.++++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhcccccc
Confidence 356666666666654333445566666666666652222233344555555554333 3333 23333455556666666
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCC-CCCEEEeeccccChhhhhhccCCCCCcEEEecC-
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 213 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~- 213 (472)
|++++|.........+....++..+++.++..+.......+..+. .++.|++++|.++......+ ...+|+++++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 666655433222233334445555555554444433333444332 45556666665554333333 234555666553
Q ss_pred CCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEeccc
Q 012044 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (472)
+.+.......|..+++|+.|++++|.++..+... +.+|+.|.+.++.--...| .+..+++|+.+++.+
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 3344333344555666666666666655443322 2334444433322111122 244555566655543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2.6e-15 Score=129.49 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=68.6
Q ss_pred CCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeC
Q 012044 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (472)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 379 (472)
++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++......+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45666666666665554555555666666666666655544444555566666666666555543344455566666666
Q ss_pred CCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccC
Q 012044 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRIT 427 (472)
Q Consensus 380 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~ 427 (472)
++|.+.. .|..+..+++|++|++++|.++.. .+++|+.|++++|++.
T Consensus 120 s~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6665553 233445555555555555544433 2344444444444443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=127.83 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=98.4
Q ss_pred cEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhH-HHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCC
Q 012044 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (472)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (472)
+.++++++.++.. +..+ .+.++.|++++|.+....+ ..+..+++|+.|++++|.++...+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677777766542 2112 2356778888877766532 3456777788888877777766666677777777777777
Q ss_pred CCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccC
Q 012044 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRIT 427 (472)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~ 427 (472)
|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.. .+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777766555667777777777777777776666667777777777777766554 3556666666666554
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=7.5e-15 Score=142.49 Aligned_cols=182 Identities=19% Similarity=0.119 Sum_probs=118.0
Q ss_pred CCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEec
Q 012044 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (472)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (472)
.+++.|+++++.+... +..+ +++|+.|++++|.++. ++ ..+++|++|++++|.++.. +. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 3788888888877653 2222 3678888888887763 33 4567888888888877652 22 333 7888888
Q ss_pred CCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChh
Q 012044 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 387 (472)
++|.++..+. .+++|+.|++++|.++.... .+++|++|++++|.++... . +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp-~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLP-E-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC-C-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcc-h-hh--CCCCEEECcCCCCCch
Confidence 8887766333 56778888888877765222 4567888888887777632 2 33 6788888888777753
Q ss_pred HHHHhhcCCCC-------cEEEecCCccccc-----ccccCceeeccCCccChhHHhhccC
Q 012044 388 GAAYLRNFKNL-------RSLEICGGGLTDA-----GLTGLVSLNVSNSRITSAGLRHLKP 436 (472)
Q Consensus 388 ~~~~l~~~~~L-------~~L~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~ 436 (472)
+. +.. +| +.|++++|.++.. .+++|+.|++++|++.+..|..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 32 322 45 7777777766654 4566777777777777666655544
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=3e-15 Score=138.62 Aligned_cols=176 Identities=20% Similarity=0.191 Sum_probs=112.3
Q ss_pred cEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhh-cCCCCcEEEccccccChhHHHHhcCCCCccEEeccc
Q 012044 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (472)
+.++.+++.+... +..+ .+.++.|++++|.+.......+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666665543 2222 23577788887777766555565 677777777777777665555567777777777777
Q ss_pred CCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhh---cCCCCCCEEEcCCCCCCh
Q 012044 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL---AGLSSLKSLNLDARQITD 362 (472)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 362 (472)
|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77665544456667777777777777766656666667777777777776665444433 346667777777776665
Q ss_pred HHHHHHhCCCC--CCEEeCCCCccC
Q 012044 363 TGLAALTSLTG--LTHLDLFGARIT 385 (472)
Q Consensus 363 ~~~~~l~~~~~--L~~L~l~~~~l~ 385 (472)
.....+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55555555555 366666666554
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=2.8e-15 Score=128.35 Aligned_cols=135 Identities=19% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEc
Q 012044 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (472)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (472)
++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555554433334555556666666666655555555566666666666666666544444556666666666
Q ss_pred CCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCcccc
Q 012044 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (472)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (472)
++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 6666665555556666677777777776666655566666777777777766543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=2.8e-15 Score=132.08 Aligned_cols=167 Identities=24% Similarity=0.301 Sum_probs=85.7
Q ss_pred CcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEeccc
Q 012044 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (472)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (472)
+..+++.++.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444443321 3444555555555555544322 34445555555555554443322 44444555555554
Q ss_pred CCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHH
Q 012044 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (472)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (472)
| .+..... +.. ++|+.|++++|.+++. ..+..+++|++|++++|.+++.
T Consensus 95 N------------------------~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-- 143 (263)
T 1xeu_A 95 N------------------------RLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-- 143 (263)
T ss_dssp S------------------------CCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--
T ss_pred C------------------------ccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--
Confidence 4 4433211 111 5566666666655543 2355566666666666666553
Q ss_pred HHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccccc
Q 012044 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (472)
Q Consensus 366 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (472)
..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 144 ~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2455566666666666666654 3455666666666666665544
No 116
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=5e-14 Score=130.14 Aligned_cols=136 Identities=25% Similarity=0.315 Sum_probs=71.2
Q ss_pred CCCcEEEccccccChhHHHHh----c-CCCCccEEecccCCCCHHHHHHhh-CCCCCCEEecCCCccCchhHHHhh----
Q 012044 252 GSLKVLNLGFNEITDECLVHL----K-GLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLS---- 321 (472)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~---- 321 (472)
+.|+.|++++|.++......+ . ..++|++|++++|.+++.....+. .+++|+.|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 566777777776665433332 2 225677777777766655443332 234566666666666554443331
Q ss_pred -CCCCCCEeeecCCCCChhHHHhh----cCCCCCCEEEcCCCCCChHHHH----HHhCCCCCCEEeCCCCccChh
Q 012044 322 -GLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 322 -~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~ 387 (472)
..++|+.|++++|.+++.....+ ..+++|++|++++|.+++.+.. .+...++|++|++++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 24556666666665544332222 3455555555555555544322 233445555555555555543
No 117
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=6.1e-14 Score=129.58 Aligned_cols=179 Identities=24% Similarity=0.356 Sum_probs=132.6
Q ss_pred CCCccEEecccCCCCHHHHHHhhCC-----CCCCEEecCCCccCchhHHHhh-CCCCCCEeeecCCCCChhHHHhhc---
Q 012044 275 LTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA--- 345 (472)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~--- 345 (472)
.+.|++|++++|.++......+... ++|+.|++++|.++......+. .+++|+.|++++|.+++.....++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3678999999999987666555432 6899999999998776555543 457899999999999876665553
Q ss_pred --CCCCCCEEEcCCCCCChHHHHHH----hCCCCCCEEeCCCCccChhH----HHHhhcCCCCcEEEecCCccccc----
Q 012044 346 --GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDA---- 411 (472)
Q Consensus 346 --~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~---- 411 (472)
..++|++|++++|.+++.+...+ ..+++|++|++++|.+.+.+ ...+..+++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46889999999999987655444 67889999999999988765 34456778899999999988765
Q ss_pred ------ccccCceeeccCCccChhHHhhccCC---c--cccccc--cccccCCHH
Q 012044 412 ------GLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 453 (472)
Q Consensus 412 ------~~~~L~~L~l~~n~~~~~~~~~l~~~---~--~L~~L~--l~~~~l~~~ 453 (472)
..++|+.|++++|.+++.+...+... . .|+.+. +..+.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 34788889999998888777665433 2 166666 666776665
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=7e-14 Score=135.70 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=126.1
Q ss_pred HHHHHHHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHH
Q 012044 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126 (472)
Q Consensus 47 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 126 (472)
.|..+....+.+++.|+++++.+++ +|..+ +++|++|++++| .++..+ ..+++|++|++++|.+.. +|.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLST--LPE- 117 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC--CCC-
T ss_pred hhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCC--cch-
Confidence 4555422234588889999888876 44433 478888888887 566433 456788888888887533 344
Q ss_pred HhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCC
Q 012044 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206 (472)
Q Consensus 127 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 206 (472)
+.+ +|++|++++|... ..+. .+++|++|++++|. +.. .+. .+++|+.|++++|.++.. +. +. ++|
T Consensus 118 l~~--~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L 182 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQ-LTM-LPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESL 182 (571)
T ss_dssp CCT--TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSCC-CC-CC--TTC
T ss_pred hhc--CCCEEECCCCcCC-CCCC---cCccccEEeCCCCc-cCc-CCC---cCCCcCEEECCCCCCCCc-ch-hh--CCC
Confidence 443 8888888887533 3333 57788888888754 332 222 467788888888877763 22 44 788
Q ss_pred cEEEecCCCCChhHHHhhhcCCCC-------cEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhc
Q 012044 207 TLLNLEGCPVTAACLDSLSALGSL-------FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273 (472)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 273 (472)
++|++++|.+... +. +.. +| +.|++++|.+... +..+..+++|+.|++++|.+++..+..+.
T Consensus 183 ~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 183 EALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 8888888877643 22 332 55 7777777777643 33445577777777777777766655544
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=2.8e-14 Score=133.82 Aligned_cols=310 Identities=15% Similarity=0.128 Sum_probs=150.2
Q ss_pred HHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCccccccccccccc
Q 012044 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153 (472)
Q Consensus 74 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (472)
..+|.+|.+|+.+.+.. .++..+..+|.+|.+|+.++++++ +......+|.++.+|+.+.+... ........+..
T Consensus 64 ~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 35667777788777765 466666777777777888777654 23334456777777777666542 12222233444
Q ss_pred CCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEE
Q 012044 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (472)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 233 (472)
+..++...... .......++..+++|+.+.+..+ +.......|.++.+|+.+.+..+ +.......+..+..|+.+
T Consensus 139 ~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 43333332222 22233445666777777776543 22233445666667776666543 222223455566666666
Q ss_pred eccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccC
Q 012044 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (472)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (472)
.+..+.... ...+.....|+.+.+.... .......+..+..++.+.+..+.. ......|..+..++.+......+.
T Consensus 214 ~~~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 214 EFPNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp CCCTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC
T ss_pred ecCCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec
Confidence 554432110 0111223455555554321 111122345555566665544321 111223444455555544433322
Q ss_pred chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhh
Q 012044 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393 (472)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 393 (472)
. ..+..+.+|+.+.+..+ +......++.+|.+|+++.+..+ ++..+..+|.+|.+|+.+.+..+ +......+|.
T Consensus 290 ~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 290 E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 1 23345555555555432 33333344445555555555322 33333344455555555555443 3333334444
Q ss_pred cCCCCcEEEe
Q 012044 394 NFKNLRSLEI 403 (472)
Q Consensus 394 ~~~~L~~L~l 403 (472)
+|++|+.+.+
T Consensus 364 ~C~~L~~i~l 373 (394)
T 4fs7_A 364 GCINLKKVEL 373 (394)
T ss_dssp TCTTCCEEEE
T ss_pred CCCCCCEEEE
Confidence 4444444444
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=7.6e-14 Score=119.39 Aligned_cols=130 Identities=24% Similarity=0.259 Sum_probs=54.7
Q ss_pred CCcEEeccCcccccccc-cccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEE
Q 012044 132 NLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (472)
Q Consensus 132 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (472)
.+++|++++|......+ ..+..+++|++|+++++. +.......+..+++|+.|++++|.++...+..|..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 34555555543222211 223444445555544422 3323333444444444444444444443333444444444444
Q ss_pred ecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcccc
Q 012044 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (472)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (472)
+++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 4444444333333444444444444444444333333334444444444443
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.5e-14 Score=135.62 Aligned_cols=328 Identities=16% Similarity=0.147 Sum_probs=224.5
Q ss_pred HHhcCCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCC
Q 012044 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131 (472)
Q Consensus 52 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~ 131 (472)
.+..+.+|+++.+..+ ++.....+|.+|++|+.+++.. .+...+...|..|.+|+.+.+..+ +......+|.++.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc--eeeecceeeeccc
Confidence 3456788999999854 6555557888999999999986 477777788899999999888765 2334446677776
Q ss_pred CCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEe
Q 012044 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (472)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (472)
.++........ ......+..|++|+.+.+... ........+..+.+|+.+.+..+ +.......+.++..|+.+.+
T Consensus 141 ~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 141 FKEITIPEGVT--VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CSEEECCTTCC--EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccccCcccc--ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 55544444322 223356788899999988642 33345567788899999888655 44444566788888888877
Q ss_pred cCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHH
Q 012044 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (472)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (472)
..+.... ........+|+.+.+.... ......+|..+..++.+.+..+... .....+..+..++.+......+..
T Consensus 216 ~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~- 290 (394)
T 4fs7_A 216 PNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE- 290 (394)
T ss_dssp CTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-
T ss_pred CCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-
Confidence 6543221 1233345678888775432 2233346777888888888765322 223346778888888776553322
Q ss_pred HHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCC
Q 012044 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371 (472)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 371 (472)
..|..+.+|+.+.+..+ +......+|.+|++|+.+.++.. ++.....++.+|.+|+++.+..+ +...+..+|.+|
T Consensus 291 --~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 --KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp --TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred --ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 34667888999988754 44555667888999999999753 66666677888999999999765 665556788899
Q ss_pred CCCCEEeCCCCccChhHHHHhhcCCCCcEE
Q 012044 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSL 401 (472)
Q Consensus 372 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 401 (472)
++|+.+++..+ +.. ....+.+|++|+.+
T Consensus 366 ~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 99999999764 222 23456777777754
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=4.2e-14 Score=131.97 Aligned_cols=265 Identities=10% Similarity=0.084 Sum_probs=153.3
Q ss_pred CCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCc
Q 012044 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (472)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (472)
.+..++.+.+.. .++..+...|.++ +|+.+.+..+ +......+|.++ +|+++.+.. .........+..|++|+
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 456666666665 4555555666654 5666666654 333444555553 466666664 22222334566666777
Q ss_pred eEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCC
Q 012044 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (472)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (472)
.+++..+ .+.......+. +.+|+.+.+..+ +......+|.++++|+.+.+..+ +......+|.+ .+|+.+.+. +
T Consensus 184 ~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 184 KADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp EEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred eeecCCC-cceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence 7776652 23333334444 466777766533 44445556666777777776553 33333334444 567776663 3
Q ss_pred cCChhHHHHhhcCCCCcEEEccccccC-----hhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccC
Q 012044 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (472)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 313 (472)
.+......+|..+++|+.+.+.++... ......|.+|++|+.+.+.. .+.......|.++.+|+.+.+..+ +.
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 344444456667777777777665432 12234567777777777764 344444456667777777777544 44
Q ss_pred chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCC-CCCEEEcCCCC
Q 012044 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQ 359 (472)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 359 (472)
.....+|.+| +|+.+.+.++.........+..++ +++.+++..+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 4555566777 788888877766554444555553 67777776543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.6e-15 Score=147.96 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=64.3
Q ss_pred CCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCC
Q 012044 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (472)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (472)
.|+.|++++|.++..+ . +..+++|+.|++++|.++. .|..++.+++|+.|++++|.+++. + .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence 4666677666665532 2 5666667777776666663 344566666677777766666653 2 56666667777776
Q ss_pred CCccChhH-HHHhhcCCCCcEEEecCCccc
Q 012044 381 GARITDSG-AAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 381 ~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~ 409 (472)
+|.+++.. |..+..+++|+.|++++|.++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 66666654 555666666666666555544
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=2.1e-14 Score=123.81 Aligned_cols=133 Identities=23% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEc
Q 012044 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (472)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (472)
++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++...+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 34444444444444333333444445555555555444433334445555555555555555444444445555555555
Q ss_pred CCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
++|.++.. +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 120 s~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55555532 233455555666666655555544444555556666666555544
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=9.2e-14 Score=129.65 Aligned_cols=266 Identities=11% Similarity=0.097 Sum_probs=185.5
Q ss_pred hCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCC
Q 012044 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182 (472)
Q Consensus 103 ~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 182 (472)
..+..++.+.+.+. +......+|.++ +|+.+.+..+ ...-....+..+ +|+.+.+.. .+......+|..|++|
T Consensus 110 ~~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 110 EILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp EECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred EecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccC
Confidence 34578888888865 344455677775 6888888764 222233455554 688888874 4555566778888899
Q ss_pred CEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEcccc
Q 012044 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (472)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (472)
+.+++..+.++......|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ +......+|.+ .+|+.+.+..
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-
Confidence 9999988877776666666 578888888744 55444567888888998888764 44444556666 6788888854
Q ss_pred ccChhHHHHhcCCCCccEEecccCCCC-----HHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCC
Q 012044 263 EITDECLVHLKGLTNLESLNLDSCGIG-----DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (472)
Q Consensus 263 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (472)
.+.......|.+|++|+.+.+.++... ......|..+++|+.+.+.. .+.......|.+|++|+.+.+..+ ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 344344456788889999988776543 23345677888899888884 466666677888888999988654 56
Q ss_pred hhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCC-CCCEEeCCCCc
Q 012044 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR 383 (472)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 383 (472)
......|.++ +|+++.+.++.........+..++ .++.|.+..+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6566677788 899999988876654444555554 67788877654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=4e-14 Score=113.28 Aligned_cols=128 Identities=24% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCCCEEecCCCccC-chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEe
Q 012044 300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (472)
Q Consensus 300 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 378 (472)
++++.|++++|.+. ...+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666655 22333445556666666666655543 4445556666666666665553344444556666666
Q ss_pred CCCCccChhH-HHHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHH---hhccCCcccccccccc
Q 012044 379 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLES 447 (472)
Q Consensus 379 l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 447 (472)
+++|.+++.. +..+..+++|++ |++++|++.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~------------------L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKS------------------LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCE------------------EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCE------------------EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6666655532 234444444444 4444555544333 3566777777777753
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=3.6e-14 Score=116.10 Aligned_cols=133 Identities=24% Similarity=0.238 Sum_probs=82.2
Q ss_pred CCCCCEEecCCCccC-chhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEE
Q 012044 299 LCNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377 (472)
Q Consensus 299 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 377 (472)
.++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777665 22333345667777777777766654 455566677777777776665434444556667777
Q ss_pred eCCCCccChhHH-HHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHH---hhccCCccccccccccccCC
Q 012044 378 DLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 451 (472)
Q Consensus 378 ~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~~~l~ 451 (472)
++++|.+.+... ..+..+++ |+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~------------------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLEC------------------LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSC------------------CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCC------------------CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 776666665321 34444444 4555555555555433 45778888999998888754
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=2.6e-15 Score=146.47 Aligned_cols=196 Identities=17% Similarity=0.145 Sum_probs=141.6
Q ss_pred cCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCc-------------CChhHHHHhhcCCCCcEEE-ccccccCh
Q 012044 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-------------LSDDGCEKFSKIGSLKVLN-LGFNEITD 266 (472)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 266 (472)
..+++|+.|++++|.+. ..|..+..+++|+.|+++++. .....+..++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666666666554 335566666666666665443 2334455666777777777 45443322
Q ss_pred hH--------HHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCCh
Q 012044 267 EC--------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (472)
Q Consensus 267 ~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (472)
.. ...+. ...|+.|++++|.+... + .++.+++|+.|++++|.+.. .+..++.+++|+.|++++|.++.
T Consensus 425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~l-p-~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKME-YADVRVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccC-ccCceEEEecCCCCCCC-c-CccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC
Confidence 11 11111 23689999999988764 3 38889999999999999884 45678899999999999999987
Q ss_pred hHHHhhcCCCCCCEEEcCCCCCChHH-HHHHhCCCCCCEEeCCCCccChhHH---HHhhcCCCCcEEEe
Q 012044 339 GSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEI 403 (472)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l 403 (472)
. + .+..+++|++|++++|.+++.. +..++.+++|+.|++++|.+++.++ ..+..+++|+.|++
T Consensus 501 l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 V-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4 3 7889999999999999999875 7788999999999999999887643 23456888888864
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=8.2e-13 Score=105.57 Aligned_cols=128 Identities=23% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEe
Q 012044 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (472)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (472)
++|+.|++++|....+..+..+..+++|+.|++++|.++.. ..++.+++|++|++++|.+....+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444443322122233344455555555555544433 3445555555555555555543344444555555555
Q ss_pred ccCCcCChhH-HHHhhcCCCCcEEEccccccChhHH---HHhcCCCCccEEecc
Q 012044 235 LNRCQLSDDG-CEKFSKIGSLKVLNLGFNEITDECL---VHLKGLTNLESLNLD 284 (472)
Q Consensus 235 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 284 (472)
+++|.+.... +..+..+++|+.|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555432 2445555555555555555544322 234555555555543
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=7.4e-13 Score=108.21 Aligned_cols=108 Identities=24% Similarity=0.273 Sum_probs=47.7
Q ss_pred CCCCcEEeccCcccc-cccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcE
Q 012044 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (472)
Q Consensus 130 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 208 (472)
.++|++|++++|... ...+..+..+++|++|++++|. +... ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 355666666665432 1223334555555555555533 2221 34444555555555555444333333333444444
Q ss_pred EEecCCCCChhH-HHhhhcCCCCcEEeccCCcC
Q 012044 209 LNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQL 240 (472)
Q Consensus 209 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~ 240 (472)
|++++|.+.... +..+..+++|+.|++++|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 444444443321 12333344444444444433
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=3.8e-13 Score=110.77 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=77.4
Q ss_pred CCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEE
Q 012044 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377 (472)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 377 (472)
.+++|+.|++++|.+... +......++|++|++++|.+++. ..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 455666777776665543 11112233666666666666553 345556666666666666665433334556666666
Q ss_pred eCCCCccChhHH-HHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHH---hhccCCccccccccccccCCHH
Q 012044 378 DLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVTAN 453 (472)
Q Consensus 378 ~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~~~l~~~ 453 (472)
++++|.+..... ..+..+++|++| ++++|++..... ..+..+++|+.|++++|...+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L------------------~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYL------------------CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEE------------------ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEE------------------EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 666666654322 134445555554 555555543221 1366788899999988886664
Q ss_pred HH
Q 012044 454 DI 455 (472)
Q Consensus 454 ~~ 455 (472)
..
T Consensus 156 ~~ 157 (176)
T 1a9n_A 156 QE 157 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=6.7e-13 Score=110.90 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=78.7
Q ss_pred CEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHH-hhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCC
Q 012044 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (472)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 381 (472)
+.++++++.+...+. . -.++++.|++++|.++...+. .+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-D--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-C--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-C--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 566777666654322 1 123677777777776654432 356667777777777777765556666777777777777
Q ss_pred CccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccCh
Q 012044 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 382 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~ 428 (472)
|.+.+..+..+..+++|++|++++|.++.. .+++|+.|++++|++.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 777766666666667777777777666544 45566666666666653
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1e-13 Score=139.66 Aligned_cols=152 Identities=14% Similarity=0.031 Sum_probs=88.2
Q ss_pred HHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCC
Q 012044 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348 (472)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 348 (472)
+..+..++.|+.|++++|.+... +..+..+++|+.|++++|.++ ..+..+..+++|++|++++|.++. .+..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCC
Confidence 33455666677777777665522 233446677777777777666 334556677777777777777763 355566777
Q ss_pred CCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCC-CCcEEEecCCcccccccccCceeeccCC
Q 012044 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGGGLTDAGLTGLVSLNVSNS 424 (472)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~L~~L~l~~n 424 (472)
+|++|++++|.++.. +..|+.+++|+.|++++|.+.+.++..+.... .+..+++++|.++......|+.|+++.|
T Consensus 294 ~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp TCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 777777777777643 34467777777777777777776666554322 1123556666666666666777777666
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.8e-12 Score=104.92 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCC
Q 012044 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (472)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 381 (472)
.+.++++++.+...+. ...++|+.|++++|.++...+..+..+++|++|++++|.++......+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4566676666554331 2236777777777777665555566777777777777777765444566777777777777
Q ss_pred CccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccCh
Q 012044 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRITS 428 (472)
Q Consensus 382 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~~ 428 (472)
|.+++..+..+..+++|++|++++|.++.. .+++|+.|++++|++.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 777766655566677777777777666544 34566666666666554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=1.5e-12 Score=107.28 Aligned_cols=108 Identities=18% Similarity=0.115 Sum_probs=46.6
Q ss_pred cCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEe
Q 012044 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329 (472)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 329 (472)
.+++|+.|++++|.+... +......++|++|++++|.+.+. ..+..+++|+.|++++|.+...++..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 345555555555555432 11111222555555555554432 233444445555555444443332333444444444
Q ss_pred eecCCCCChhHH-HhhcCCCCCCEEEcCCCCC
Q 012044 330 NLSFTGISDGSL-RKLAGLSSLKSLNLDARQI 360 (472)
Q Consensus 330 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 360 (472)
++++|.+..... ..+..+++|+.|++++|.+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 444444433211 1333444444444444443
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.3e-11 Score=103.03 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=36.6
Q ss_pred cCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcE
Q 012044 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (472)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (472)
..+++|+.|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 33444444444444444333334444444444444444444333333334444444444444444333333344444444
Q ss_pred EEcccccc
Q 012044 257 LNLGFNEI 264 (472)
Q Consensus 257 L~l~~~~~ 264 (472)
|++++|.+
T Consensus 131 L~L~~N~l 138 (192)
T 1w8a_A 131 LNLASNPF 138 (192)
T ss_dssp EECTTCCB
T ss_pred EEeCCCCc
Confidence 44444433
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1.1e-12 Score=132.19 Aligned_cols=163 Identities=16% Similarity=0.054 Sum_probs=86.7
Q ss_pred CCCccEEEeecCCCChhHHHHhhCCCCCCeeecCCcc---ccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCC
Q 012044 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (472)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~ 132 (472)
.++++.|+|..+.+.. .+..+.....|+.+.+.... ......+..+..+++|+.|+|++|.+. .++..+.++++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF--NISANIFKYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC--CCChhhcCCCC
Confidence 3567888888777764 33333344445554443311 111234566777888888888888753 44555667888
Q ss_pred CcEEeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEec
Q 012044 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (472)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (472)
|++|++++|... ..+..+..+++|++|++++|. +. ..+..+..+++|+.|++++|.++.. +..|..+++|++|+++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCC
Confidence 888888887544 556677888888888888855 44 3466778888888888888877643 4557888888888888
Q ss_pred CCCCChhHHHhhh
Q 012044 213 GCPVTAACLDSLS 225 (472)
Q Consensus 213 ~~~~~~~~~~~l~ 225 (472)
+|.+.+..+..+.
T Consensus 325 ~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 325 GNPLEKQFLKILT 337 (727)
T ss_dssp TSCCCSHHHHHHH
T ss_pred CCccCCCChHHHh
Confidence 8888776665554
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=1.1e-11 Score=116.07 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=75.5
Q ss_pred HHhhCCC-CCCeeecCCccccChhhHHHhhCCCCCCEEecCCCC--CCCHHHHHHHhCCCCCcEEeccCccccccccccc
Q 012044 75 IHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151 (472)
Q Consensus 75 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 151 (472)
.+|.+|. .|+.+.+.. .++..+..+|.+|.+|+.+.+..+. .+......+|.++.+|+.+.+..+ ........+
T Consensus 57 ~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3444553 466666665 4566666666666666666664431 122223345666666666655442 111222345
Q ss_pred ccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCc
Q 012044 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (472)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 231 (472)
..+.+|+.+.+.. .........+..+..|+.+.+..+ ++.....+|.. ..|+.+.+..... .....++..+.++.
T Consensus 134 ~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCC
T ss_pred hhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccc
Confidence 5666666666642 223333445556666666666433 22222333432 4566666544311 11123445555555
Q ss_pred EEecc
Q 012044 232 YLNLN 236 (472)
Q Consensus 232 ~L~l~ 236 (472)
.....
T Consensus 209 ~~~~~ 213 (394)
T 4gt6_A 209 TITSD 213 (394)
T ss_dssp EEEEC
T ss_pred eeccc
Confidence 55443
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=5.1e-12 Score=105.44 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=81.0
Q ss_pred CEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCC
Q 012044 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (472)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 382 (472)
+.++++++.+...+. .-.++++.|++++|.++.. +..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~---~~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK---GIPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCS---CCCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCC---CCCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456676666554321 1235677777777777643 356667777777777777777665556777777777777777
Q ss_pred ccChhHHHHhhcCCCCcEEEecCCccccc------ccccCceeeccCCccC
Q 012044 383 RITDSGAAYLRNFKNLRSLEICGGGLTDA------GLTGLVSLNVSNSRIT 427 (472)
Q Consensus 383 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~L~~L~l~~n~~~ 427 (472)
.+.+..+..+..+++|++|++++|.++.. .+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77776666677777777777777766654 3556666666666554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.2e-13 Score=116.31 Aligned_cols=126 Identities=25% Similarity=0.317 Sum_probs=60.6
Q ss_pred hcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCC
Q 012044 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (472)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (472)
+..+++|++|++++|.+... + .+..+++|+.|++++|.+... +..+..+++|++|++++|.+++.. .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 33344444444444433321 1 333344455555554444322 122333455666666665555421 344555666
Q ss_pred EEEcCCCCCChHHH-HHHhCCCCCCEEeCCCCccChhHHH----------HhhcCCCCcEEE
Q 012044 352 SLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAA----------YLRNFKNLRSLE 402 (472)
Q Consensus 352 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~----------~l~~~~~L~~L~ 402 (472)
+|++++|.+++... ..+..+++|++|++++|.+.+..+. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66666666554322 3455566666666666655444322 245556666554
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=8.3e-12 Score=102.89 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=53.7
Q ss_pred CCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCC
Q 012044 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (472)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (472)
+++.|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.++......+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333334444555555555555444333334445555555555555554333334445555555555
Q ss_pred CCccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 381 GARITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 381 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
+|.+.+..+..+..+++|++|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 55555444444455555555555555544
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=7.3e-14 Score=117.56 Aligned_cols=143 Identities=25% Similarity=0.281 Sum_probs=86.5
Q ss_pred HhhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCC
Q 012044 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (472)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 374 (472)
.+..+++|+.|++++|.+.... .+..+++|++|++++|.++. .+..+..+++|++|++++|.+++. ..+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCcC--CccccCCCC
Confidence 5667777888888777766633 56667778888887776664 223334456777777777777763 246666777
Q ss_pred CEEeCCCCccChhHH-HHhhcCCCCcEEEecCCcccccccccCceeeccCCccChhHHhhccCCccccccccccccCCH
Q 012044 375 THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 452 (472)
Q Consensus 375 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 452 (472)
+.|++++|.+.+... ..+..+++|++|++++|.+...... .+.........+..+++|+.|+ ++++++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~--------~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE--------NNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT--------TTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc--------ccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777777776433 4556666666666665544322000 0011111222366788888887 566554
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=4e-11 Score=112.36 Aligned_cols=321 Identities=16% Similarity=0.157 Sum_probs=163.7
Q ss_pred CccEEEeecCCCChhHHHHhhCCCCCCeeecCCc--cccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcE
Q 012044 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (472)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 135 (472)
.|+++.+... ++.....+|.+|++|+.+.+..+ ..++..+...|..|.+|+.+.+..+ +......+|..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 4888888764 55455577888999999988754 2467777788888888888888765 23444567788889999
Q ss_pred EeccCcccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCC
Q 012044 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (472)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (472)
+.+... ........+..+..|+.+.+.. .+......++.. .+|+.+.+... +.......+..+..++........
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS
T ss_pred ccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccc
Confidence 988753 2223335677888888888864 234344445543 56888887644 233345567778888877765443
Q ss_pred CChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHH
Q 012044 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (472)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (472)
........+........... .+.....+..+.+... +......+|.++..|+.+.+.... .......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~a 283 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTGA 283 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTTT
T ss_pred cccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeecccccEEeccccc-ceecCcc
Confidence 22110000000000000000 0001111222222211 111111234444555555544321 1111223
Q ss_pred hhCCCCCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCC
Q 012044 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (472)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 375 (472)
|.+++.|+.+.+.. .+.......|.+|++|+.+.+..+ ++.....+|.+|.+|+++.+..+ ++..+..+|.+|++|+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 44455555555542 223333344555566666665432 33333444555666666666432 3333344556666666
Q ss_pred EEeCCCCccChhHHHHhhcCCCCcEEEecC
Q 012044 376 HLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (472)
Q Consensus 376 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 405 (472)
.+++.++... ...+..+..|+.+.+..
T Consensus 361 ~i~~~~~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 361 NIEYSGSRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEESSCHHH---HHTCBCCCCC-------
T ss_pred EEEECCceee---hhhhhccCCCCEEEeCC
Confidence 6666554321 12344555666655544
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=104.71 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=61.1
Q ss_pred CCCEEecCCCccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCC
Q 012044 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (472)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 380 (472)
+++.|++++|.+.... ..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555544322 344555556666666555555444455555666666666666555444455556666666666
Q ss_pred CCccChhHHHHhhcCCCCcEEEecCCccc
Q 012044 381 GARITDSGAAYLRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 381 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 409 (472)
+|.+....+..+..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666554545556666666666666554
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.11 E-value=8.3e-11 Score=94.23 Aligned_cols=91 Identities=21% Similarity=0.313 Sum_probs=76.8
Q ss_pred CCccEEEeecCCCChhHHHHhhCCCCCCeeecCCccccChhhHHHhhCC----CCCCEEecCCCCCCCHHHHHHHhCCCC
Q 012044 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN 132 (472)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~L~~~~~~~~~~~~~~~~l~~ 132 (472)
-++++|+++++.+++.....++.|++|++|++++|..+++.+...+..+ ++|++|+|++|..+++.....++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3689999998889888888888999999999999988999888888764 479999999988778888888888888
Q ss_pred CcEEeccCccccccc
Q 012044 133 LVKLDLERCTRIHGG 147 (472)
Q Consensus 133 L~~L~l~~~~~~~~~ 147 (472)
|++|++++|+.+.+.
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 888888888766653
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=5.6e-10 Score=102.10 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=95.2
Q ss_pred HHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHh--CCCCCCEEeCCCC--ccChh-----H
Q 012044 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGA--RITDS-----G 388 (472)
Q Consensus 318 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~l~~~-----~ 388 (472)
..+..+|+|+.|.+.++.-... ..+ ..++|++|.+..+.++......+. .+|+|+.|+++.+ ...+. .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4456778888888877621111 112 267888888888888776666664 6788888887521 11110 0
Q ss_pred HHHh--hcCCCCcEEEecCCccccc---------ccccCceeeccCCccChhHHhhc----cCCccccccccccccCCHH
Q 012044 389 AAYL--RNFKNLRSLEICGGGLTDA---------GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRSLTLESCKVTAN 453 (472)
Q Consensus 389 ~~~l--~~~~~L~~L~l~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~ 453 (472)
...+ ..+++|++|++++|.+.+. .+++|+.|+++.|.+.+.+...+ ..+++|+.|++++|.+++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1112 3478888888888877643 47889999999998888655443 4568899999999999988
Q ss_pred HHHHhhc
Q 012044 454 DIKRLQS 460 (472)
Q Consensus 454 ~~~~l~~ 460 (472)
.+..+.+
T Consensus 323 ~~~~l~~ 329 (362)
T 2ra8_A 323 MKKELQK 329 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=3.8e-09 Score=96.57 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=17.5
Q ss_pred CCCccEEecccCCCCHHHHHHhh--CCCCCCEEecC
Q 012044 275 LTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELS 308 (472)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~ 308 (472)
.++|++|.+..+.+.......+. .+|+|+.|+++
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 45555665555555544443333 45555555553
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=5.3e-10 Score=104.24 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=90.3
Q ss_pred HhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhHHHhhCCCCC
Q 012044 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326 (472)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 326 (472)
.+..+..++.+.+... +.......+.++..|+.+.+..+ +.......|..+.+|+.+.+..+ +.......+..|++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4445566666666543 22222234566777777777653 33333345666777777777543 344444566778888
Q ss_pred CEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCC
Q 012044 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397 (472)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 397 (472)
+.+.+.++.+.......+.+|.+|+++.+..+ ++..+..+|.+|++|+.+.+..+ ++.....+|.++..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 88888777676666667777888888887643 44444567778888888887654 44444555655543
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=6.8e-10 Score=103.49 Aligned_cols=300 Identities=16% Similarity=0.121 Sum_probs=163.8
Q ss_pred hCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccCcccccccccccccCCCC
Q 012044 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (472)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (472)
....+|+.+.+.. +++..+..+|.+|.+|+.+++..+ +......+|.++ +|+.+.+..+ ........+..+ +|
T Consensus 43 ~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 3445677777765 466666666777777777777654 233334556555 4555555432 111111223332 56
Q ss_pred ceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccC
Q 012044 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237 (472)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 237 (472)
+.+.+... ........+..+ +++.+.+..+ ++......+..+..++...+............+. ....
T Consensus 116 ~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~------- 183 (379)
T 4h09_A 116 DDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKN------- 183 (379)
T ss_dssp SEEECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETT-------
T ss_pred ccccCCCc--cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-cccc-------
Confidence 66666431 222222333333 3444444322 2222233445555666555543321111000000 0000
Q ss_pred CcCChhHHHHhhcCCCCcEEEccccccChhHHHHhcCCCCccEEecccCCCCHHHHHHhhCCCCCCEEecCCCccCchhH
Q 012044 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317 (472)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 317 (472)
......+.....+..+.+.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ +.....
T Consensus 184 ----~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 184 ----KTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ----SSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ----cceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 0000122233444555444321 1112234566778888887653 33233345667788888888754 444455
Q ss_pred HHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCC
Q 012044 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397 (472)
Q Consensus 318 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 397 (472)
..+..+.+|+.+.+... +.......+..|.+|+++.+.++.++.....+|.+|.+|+.+.+..+ +......+|.+|.+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 66778888888888653 44445566778889999998887777666677888899999998654 55556677888888
Q ss_pred CcEEEecC
Q 012044 398 LRSLEICG 405 (472)
Q Consensus 398 L~~L~l~~ 405 (472)
|+.+.+..
T Consensus 335 L~~i~ip~ 342 (379)
T 4h09_A 335 LSTISYPK 342 (379)
T ss_dssp CCCCCCCT
T ss_pred CCEEEECC
Confidence 88888754
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=3e-10 Score=92.59 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=41.7
Q ss_pred CCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEe
Q 012044 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (472)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 403 (472)
++|++|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555544444444444555555555555554433333444555555555555555444444444555555555
Q ss_pred cCCcc
Q 012044 404 CGGGL 408 (472)
Q Consensus 404 ~~~~~ 408 (472)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 55443
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=5.3e-10 Score=91.38 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCccChhHHHHhhcCCCCcEEEe
Q 012044 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (472)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 403 (472)
++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444433333444444444444444444332223344444444444444444433333444444444444
Q ss_pred cCCcc
Q 012044 404 CGGGL 408 (472)
Q Consensus 404 ~~~~~ 408 (472)
++|.+
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 44443
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.88 E-value=9.9e-09 Score=84.67 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=73.7
Q ss_pred HHHhhCCCCCCEeeecCC-CCChhHHHh----hcCCCCCCEEEcCCCCCChHHHHHH----hCCCCCCEEeCCCCccChh
Q 012044 317 LRHLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDS 387 (472)
Q Consensus 317 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~ 387 (472)
...+...+.|++|++++| .+.+..... +...++|++|++++|.+.+.+...+ ...+.|++|++++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556777888888777 776644333 3456777777777777776654433 3456677777777777765
Q ss_pred HHHHh----hcCCCCcEEEecCCcccccccccCceeec--cCCccChhHHh----hccCCccccccccccccCCHHH
Q 012044 388 GAAYL----RNFKNLRSLEICGGGLTDAGLTGLVSLNV--SNSRITSAGLR----HLKPLKNLRSLTLESCKVTAND 454 (472)
Q Consensus 388 ~~~~l----~~~~~L~~L~l~~~~~~~~~~~~L~~L~l--~~n~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~ 454 (472)
+...+ ...+. |+.|++ ++|.+.+.+.. .+...+.|++|++++|.+...+
T Consensus 109 g~~~l~~~L~~n~~------------------L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 109 GILALVEALQSNTS------------------LIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHHGGGGCSS------------------CCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHHhCCC------------------ceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 43332 33344 555555 55666554432 3445677888888877766554
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=4.5e-09 Score=85.51 Aligned_cols=85 Identities=25% Similarity=0.202 Sum_probs=44.2
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEc
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (472)
++|+.|++++|.++...+..|.++++|++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555555544444555555555555555555443334455555555555555554444444455555555555
Q ss_pred ccccc
Q 012044 260 GFNEI 264 (472)
Q Consensus 260 ~~~~~ 264 (472)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 55544
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=8.2e-09 Score=84.26 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=39.5
Q ss_pred CCCCEEEeeccccChhhhhhccCCCCCcEEEecCCCCChhHHHhhhcCCCCcEEeccCCcCChhHHHHhhcCCCCcEEEc
Q 012044 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (472)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (472)
++|+.|++++|.++...+..|.++++|++|++++|.+.......+..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34455555555544444444444555555555555444433333344445555555544444333333444444444444
Q ss_pred ccccc
Q 012044 260 GFNEI 264 (472)
Q Consensus 260 ~~~~~ 264 (472)
++|.+
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 44443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=2.7e-08 Score=82.05 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=90.2
Q ss_pred HHHHhhCCCCCCEEecCCC-ccCchhHH----HhhCCCCCCEeeecCCCCChhHHHhh----cCCCCCCEEEcCCCCCCh
Q 012044 292 GLVNLTGLCNLKCLELSDT-QVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITD 362 (472)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~ 362 (472)
....+...+.|++|++++| .++..... .+...++|++|++++|.+.+.....+ ...++|++|++++|.+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445667899999999999 88875543 44567999999999999987655444 456899999999999998
Q ss_pred HHHHH----HhCCCCCCEEeC--CCCccChhHHHH----hhcCCCCcEEEecCCccc
Q 012044 363 TGLAA----LTSLTGLTHLDL--FGARITDSGAAY----LRNFKNLRSLEICGGGLT 409 (472)
Q Consensus 363 ~~~~~----l~~~~~L~~L~l--~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~~ 409 (472)
.+... +...+.|++|++ ++|.+.+.+... +...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 77554 456789999999 889999876543 345567777766666543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.79 E-value=5.3e-09 Score=83.76 Aligned_cols=90 Identities=16% Similarity=0.337 Sum_probs=69.0
Q ss_pred CCCCeeecCCccccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCC----CCCcEEeccCcccccc-cccccccCC
Q 012044 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL----INLVKLDLERCTRIHG-GLVNLKGLM 155 (472)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~-~~~~~~~l~ 155 (472)
..|+.|++++| .+++.+...+..|++|++|+|++|..+++.....++.+ ++|++|++++|..+++ ....+..++
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 47899999998 48888888888899999999999987888888888765 4688888887765543 345566777
Q ss_pred CCceEeecCCCCCCcc
Q 012044 156 KLESLNIKWCNCITDS 171 (472)
Q Consensus 156 ~L~~L~l~~~~~~~~~ 171 (472)
+|++|++++|+.+++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 7777777777766653
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=2.4e-08 Score=91.83 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=64.7
Q ss_pred EEecccC-CCCHHHHHHhhCCCCCCEEecCC-CccCchhHHHhhCCCCCCEeeecCCCCChhHHHhhcCCCCCCEEEcCC
Q 012044 280 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (472)
Q Consensus 280 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (472)
.++.+++ .+... |. +..+.+|+.|++++ |.+.......+..+++|+.|++++|.++...+..+..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4455555 55542 33 66666777777774 666666656666777777777777777666666666677777777777
Q ss_pred CCCChHHHHHHhCCCCCCEEeCCCCccC
Q 012044 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385 (472)
Q Consensus 358 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 385 (472)
|.++...+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 766654333344343 777777766655
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1.4e-07 Score=86.60 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=45.3
Q ss_pred HHHHHhCCCCCcEEeccC-cccccccccccccCCCCceEeecCCCCCCccccccccCCCCCCEEEeeccccChhhhhhcc
Q 012044 123 GMKAFAGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201 (472)
Q Consensus 123 ~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 201 (472)
+|. +..+++|++|++++ |......+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.++...+..+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 344 55555666666654 4322222244555555555555553 34444444555555555555555555544333333
Q ss_pred CCCCCcEEEecCCCC
Q 012044 202 GLQKLTLLNLEGCPV 216 (472)
Q Consensus 202 ~~~~L~~L~l~~~~~ 216 (472)
.++ |+.|++.+|.+
T Consensus 102 ~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 102 GLS-LQELVLSGNPL 115 (347)
T ss_dssp SCC-CCEEECCSSCC
T ss_pred cCC-ceEEEeeCCCc
Confidence 333 55555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=1.8e-05 Score=68.50 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=29.6
Q ss_pred hcCCCccEEEeecCCCCh--hHHHHhhCCCCCCeeecCCccccChh-hHHHhhCCCCCCEEecCCCCC
Q 012044 54 SQGSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNA 118 (472)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~ 118 (472)
..+++|++|+|++|.+.+ .++..++.+++|+.|++++| .+... ....+..+ +|++|+|++|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcC
Confidence 345555555555555554 22334445555555555554 33332 11222222 555555555543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.91 E-value=0.00021 Score=58.32 Aligned_cols=61 Identities=26% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCCCCCEeeecCCCCChhHHHhhc----CCCCCCEEEcCCCCCChHHHHHH----hCCCCCCEEeCCCC
Q 012044 322 GLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGA 382 (472)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~ 382 (472)
.-+.|+.|++++|.+.+.....++ ....|++|+|++|.+++.+...+ ..-+.|+.|+++++
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334455555555555443332222 34555555555555555544333 23344555555543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.5e-05 Score=68.99 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCCCCCEEeCCCCccChh--HHHHhhcCCCCcEEEecCCccccc----ccc--cCceeeccCCccChhH-------Hhhc
Q 012044 370 SLTGLTHLDLFGARITDS--GAAYLRNFKNLRSLEICGGGLTDA----GLT--GLVSLNVSNSRITSAG-------LRHL 434 (472)
Q Consensus 370 ~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~~~~~~----~~~--~L~~L~l~~n~~~~~~-------~~~l 434 (472)
.+++|+.|++++|.+.+. .+..+..+++|+.|+|++|.+.+. .+. +|+.|++++|++.+.. ...+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 345555555555555442 223334455555555555444432 111 4555555555544311 1223
Q ss_pred cCCccccccc
Q 012044 435 KPLKNLRSLT 444 (472)
Q Consensus 435 ~~~~~L~~L~ 444 (472)
..+|+|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4556665555
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.84 E-value=0.00013 Score=59.53 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=56.5
Q ss_pred hhCCCCCCEeeecCC-CCChhHHH----hhcCCCCCCEEEcCCCCCChHHHHH----HhCCCCCCEEeCCCCccChhHHH
Q 012044 320 LSGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAA 390 (472)
Q Consensus 320 l~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~ 390 (472)
+..-+.|++|+++++ .+.+.... .+.....|++|+|++|.+.+.+... +..-+.|++|+++.|.+.+.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567777777764 66654333 3445678888888888888766543 34557788888888888876554
Q ss_pred Hh----hcCCCCcEEEecCC
Q 012044 391 YL----RNFKNLRSLEICGG 406 (472)
Q Consensus 391 ~l----~~~~~L~~L~l~~~ 406 (472)
.+ ...+.|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 43 44456666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.60 E-value=0.009 Score=45.31 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=17.4
Q ss_pred cCceeeccCCccChhHHhhccCCccccccccccccC
Q 012044 415 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 450 (472)
Q Consensus 415 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l 450 (472)
+|+.|+|++|.++......|..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344444555544444444444455555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.11 E-value=0.15 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=20.3
Q ss_pred CCCEEEcCCCCCChHHHHHHhCCCCCCEEeCCCCcc
Q 012044 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (472)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 384 (472)
+|++|+|++|.++......|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 566666666665554444455555666666655543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.04 E-value=0.71 Score=32.73 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=18.3
Q ss_pred HhhCCCCCCeeecCCccccChhhHHHhhCCCCCCEEecCC
Q 012044 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115 (472)
Q Consensus 76 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 115 (472)
.|..|.+|+.+.+.. .++..+...|..|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 344555555555554 34444444444455555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.21 E-value=0.62 Score=33.02 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=25.7
Q ss_pred ccChhhHHHhhCCCCCCEEecCCCCCCCHHHHHHHhCCCCCcEEeccC
Q 012044 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (472)
Q Consensus 93 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (472)
.++..+...|..|.+|+.+.|..+ +......+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 344555556666666666666654 2233345566666666666554
Done!