BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012045
         (472 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
 pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
          Length = 456

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 81  LEDGMEFPIPENNLLQHSSRDP----VALNTGSAVTPLPEKIVSPIST 124
           L++   FP      L+H  + P    ++L TG    P+PE+I S +S 
Sbjct: 47  LKNNYLFPEINRRELEHIEKHPNVQLISLGTGDTTEPIPEQITSHMSN 94


>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
          Length = 397

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 384 NVSAACVMAALATVKKAVDTKTCNTVASGIQFGLL 418
           N+S+ACV   L   +KA     C+T   G++ G+L
Sbjct: 343 NMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVL 377


>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
          Length = 413

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 384 NVSAACVMAALATVKKAVDTKTCNTVASGIQFGLL 418
           N+S+ACV   L   +KA     C+T   G++ G+L
Sbjct: 359 NMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVL 393


>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
          Length = 490

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 76  SINNVLEDGMEFPIPENNLLQHSSRDPVALNTGSAVTPLPEKIVSPI---STEPLV 128
           S  N  ED + + +PE N   +   DP    +G +V  +P  +VSP+   S+ PLV
Sbjct: 430 SDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSVPSVP--MVSPLPMASSVPLV 483


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,916,177
Number of Sequences: 62578
Number of extensions: 490676
Number of successful extensions: 932
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 6
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)