Query 012045
Match_columns 472
No_of_seqs 332 out of 2156
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eki_A DRG 1, developmentally- 9.1 1.2E+02 0.004 25.1 1.4 35 54-91 46-86 (93)
2 2lat_A Dolichyl-diphosphooligo 7.2 3.2E+02 0.011 18.8 2.7 17 381-397 9-25 (37)
3 1rkl_A Dolichyl-diphosphooligo 6.8 3.5E+02 0.012 18.5 2.7 18 380-397 8-25 (36)
4 3iyz_A Aquaporin-4; water tran 6.5 1.7E+03 0.059 22.0 9.4 117 149-267 134-262 (340)
5 1d4b_A CIDE B, human cell deat 6.1 1.8E+02 0.0063 25.1 1.3 31 14-44 9-42 (122)
6 1j4n_A Aquaporin 1; membrane p 5.9 1.6E+03 0.056 21.1 12.3 118 147-264 96-223 (271)
7 4ea3_A Fusion protein of nocic 5.1 3.7E+02 0.013 26.2 3.0 14 151-164 132-145 (434)
8 2zz9_A Aquaporin-4; water tran 4.9 1.3E+03 0.046 22.3 6.8 116 151-267 97-223 (301)
9 3udc_A Small-conductance mecha 4.3 2E+03 0.069 20.2 13.7 14 380-393 112-125 (285)
10 2ls4_A High affinity copper up 5.7 2E+02 0.0067 18.3 0.0 22 446-470 4-25 (26)
No 1
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=9.10 E-value=1.2e+02 Score=25.06 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=26.2
Q ss_pred ccccCCCCCC------CCCCCCCCcceecccccccCCccccCCc
Q 012045 54 AGDIGDRALP------SKRHSESGSLCLSINNVLEDGMEFPIPE 91 (472)
Q Consensus 54 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (472)
=-||+|+..+ +-||+ .-|+.+|-.+++|+|+.|-.
T Consensus 46 H~di~~~fkyA~VwG~saK~~---~qrVgldh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 46 HKNLIKEFKYALVWGLSVKHN---PQKVGKDHTLEDEDVIQIVK 86 (93)
T ss_dssp CTTCTTTEEEEEEBSTTSSSS---SEEECSSCCCCSSEEECEEE
T ss_pred HHHHHhhccEEEEecccccCC---CEECCCCcEecCCCEEEEEe
Confidence 3578887554 45664 37999999999999988754
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=7.23 E-value=3.2e+02 Score=18.79 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012045 381 LIANVSAACVMAALATV 397 (472)
Q Consensus 381 f~aNvlGsflLgil~~l 397 (472)
.++|.+|++.+.++..+
T Consensus 9 ~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 9 IFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999988766543
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.78 E-value=3.5e+02 Score=18.49 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 012045 380 TLIANVSAACVMAALATV 397 (472)
Q Consensus 380 Tf~aNvlGsflLgil~~l 397 (472)
..++|.+|++.+.++..+
T Consensus 8 ~~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 8 NSLAITFGIVMMTLIVIY 25 (36)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367899999988766543
No 4
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=6.46 E-value=1.7e+03 Score=21.99 Aligned_cols=117 Identities=16% Similarity=0.065 Sum_probs=52.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhC-CCCCCCCC--CCccccchhHHHHHHHHHHHHHHHHHhcccC---CcchHHHHHH
Q 012045 149 SCLVHLAVFGILGVLSRYLLEKLFG-PSVAGVTS--DGSILYLDLPSNMVGSFLMGWWGVVFKGDIS---KVSDYLVIGL 222 (472)
Q Consensus 149 ~~~l~v~lggilGalaR~~L~~l~~-~~~~~~t~--~~~~~~~tl~vNvvGcflMG~l~~~~~~~~~---~~s~~l~~gL 222 (472)
.+++.=.+|+++|+.+=+.+..-.. .... ++. .......-+++-++++|++=+..-....+.. ....++.+++
T Consensus 134 ~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg-~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~IGl 212 (340)
T 3iyz_A 134 FYITAQCLGAIIGAGILYLVTPPSVVGGLG-VTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGF 212 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCcee-eccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhHHHH
Confidence 3444457899999987766532110 0010 111 1111223477788888877554322111111 1123555555
Q ss_pred hhhcc----ccccchhHHH--HHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 012045 223 NTGYL----GSLTTFSGWN--QKMLDLTVDGHWVLAFLGFFIGLFLASHSI 267 (472)
Q Consensus 223 tTGFc----GsfTTFSTf~--~e~~~l~~~g~~~~all~~lisl~lgl~a~ 267 (472)
+.+.+ +.+|-+| ++ ++.--.+..+.|.+..+|++.-++.++++.
T Consensus 213 ~v~i~~~~g~~~TG~a-mNPARdlGPal~~~~w~~~WVywvgPiiGailaa 262 (340)
T 3iyz_A 213 SVAIGHLFAINYTGAS-MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAG 262 (340)
T ss_pred HHHHHHHhccCCcccc-ccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHH
Confidence 54322 3455543 21 222112223445455566655554444443
No 5
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=6.14 E-value=1.8e+02 Score=25.09 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.4
Q ss_pred cCCcccc-ccccccccccccc--cccccccccCc
Q 012045 14 SGSFGRT-ISVSSSLRRRSLS--LSSAVASQIDD 44 (472)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 44 (472)
.+|+.|. +|+|+++.||-++ .+...|+.+-|
T Consensus 9 ~~sl~~~~~~~~~~~~~~~~~~~~~~~kPfKV~~ 42 (122)
T 1d4b_A 9 PSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCD 42 (122)
T ss_dssp SSSSCCCCCCCCCCSCSSCCCCSSCCCEEEEEEC
T ss_pred ccchhheeeeccceeeeeeecCCCCCCCCEEEec
Confidence 3577776 9999999888777 67778888854
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=5.87 E-value=1.6e+03 Score=21.06 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCC-CCCC-CCCCCccccchhHHHHHHHHHHHHHHHHHhcccC---CcchHHHHH
Q 012045 147 YISCLVHLAVFGILGVLSRYLLEKLFGP-SVAG-VTSDGSILYLDLPSNMVGSFLMGWWGVVFKGDIS---KVSDYLVIG 221 (472)
Q Consensus 147 ~l~~~l~v~lggilGalaR~~L~~l~~~-~~~~-~t~~~~~~~~tl~vNvvGcflMG~l~~~~~~~~~---~~s~~l~~g 221 (472)
.+.+++.=.+|+++|+.+=+.+..-.+. .... .+.++.....-+++-++++|++-+..-....+.. ....++.++
T Consensus 96 ~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~~~~~~~pl~IG 175 (271)
T 1j4n_A 96 AIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIG 175 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTCSSCCCCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhccccCCCccccHHHHHH
Confidence 3344555578888888876665321111 0100 0111111234578889999888654322211111 123556666
Q ss_pred Hhhhcc----ccccchh-HHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012045 222 LNTGYL----GSLTTFS-GWNQKMLDLTVDGHWVLAFLGFFIGLFLAS 264 (472)
Q Consensus 222 LtTGFc----GsfTTFS-Tf~~e~~~l~~~g~~~~all~~lisl~lgl 264 (472)
+....+ |.+|-+| .-+++.--.+..+.|.+...|++.-++.++
T Consensus 176 l~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~ 223 (271)
T 1j4n_A 176 FSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAA 223 (271)
T ss_dssp HHHHHHHHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHH
Confidence 655422 3455544 223333222223444444455544444333
No 7
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=5.07 E-value=3.7e+02 Score=26.20 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=8.5
Q ss_pred HHHHHHHhHHHHHH
Q 012045 151 LVHLAVFGILGVLS 164 (472)
Q Consensus 151 ~l~v~lggilGala 164 (472)
++.+++.|++|..+
T Consensus 132 ~~~i~~~gi~gN~l 145 (434)
T 4ea3_A 132 YLAVCVGGLLGNCL 145 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455667777764
No 8
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=4.85 E-value=1.3e+03 Score=22.26 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=50.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHh-CCCCCCCCC--CCccccchhHHHHHHHHHHHHHHHHHhcccC---CcchHHHHHHhh
Q 012045 151 LVHLAVFGILGVLSRYLLEKLF-GPSVAGVTS--DGSILYLDLPSNMVGSFLMGWWGVVFKGDIS---KVSDYLVIGLNT 224 (472)
Q Consensus 151 ~l~v~lggilGalaR~~L~~l~-~~~~~~~t~--~~~~~~~tl~vNvvGcflMG~l~~~~~~~~~---~~s~~l~~gLtT 224 (472)
++.=.+|+++|+.+=+.+..-. ..... .+. .......-+++-++++|++=+..-....+.. ....++.+++..
T Consensus 97 iiAQ~lGAi~Ga~lv~~~~~~~~~~~~g-~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~~~~~pl~IGl~v 175 (301)
T 2zz9_A 97 ITAQCLGAIIGAGILYLVTPPSVVGGLG-VTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSV 175 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSCGGGTSS-CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcee-eecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHhHHHHHHH
Confidence 3344678888887766543110 00000 111 1111233578888888887654322211111 112456666655
Q ss_pred hccc----cccchh-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 012045 225 GYLG----SLTTFS-GWNQKMLDLTVDGHWVLAFLGFFIGLFLASHSI 267 (472)
Q Consensus 225 GFcG----sfTTFS-Tf~~e~~~l~~~g~~~~all~~lisl~lgl~a~ 267 (472)
+.+. .+|.+| .-+++.--.+..+.|.+...|++.-++.++++.
T Consensus 176 ~i~~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa 223 (301)
T 2zz9_A 176 AIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAG 223 (301)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHH
Confidence 3322 233333 012222111222445555566655555544433
No 9
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=4.31 E-value=2e+03 Score=20.21 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHH
Q 012045 380 TLIANVSAACVMAA 393 (472)
Q Consensus 380 Tf~aNvlGsflLgi 393 (472)
..+.|+++.+++-+
T Consensus 112 ~~l~n~~~Gi~i~~ 125 (285)
T 3udc_A 112 NLVKDMISGFFIIF 125 (285)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 57788887765543
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=5.67 E-value=2e+02 Score=18.30 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 012045 446 YALITILISFGLGILIYSVPVWTKG 470 (472)
Q Consensus 446 Y~~~Si~~gll~~~lg~~~~~Wt~g 470 (472)
|+.+++++| +.+|+....|.+.
T Consensus 4 ~l~iavvlG---a~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 4 YLCIAVAAG---AGTGYFLFSWKKX 25 (26)
Confidence 556666666 5566666666553
Done!