Query 012045
Match_columns 472
No_of_seqs 332 out of 2156
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 20:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012045.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012045hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 4.4 6.1E+02 0.044 20.6 6.1 51 381-433 4-55 (260)
2 d1rc2a_ f.19.1.1 (A:) Aquapori 4.0 3.6E+02 0.027 22.3 4.2 32 437-468 75-106 (231)
3 d1wxqa2 d.15.10.2 (A:320-395) 3.2 63 0.0046 23.6 -1.7 18 72-89 56-73 (76)
4 d1v8da_ c.140.1.1 (A:) Hypothe 2.8 1.6E+02 0.012 25.1 0.3 23 40-62 113-139 (193)
5 d1v9sa1 c.61.1.1 (A:1-208) Ura 2.6 78 0.0057 27.1 -2.1 12 52-63 195-206 (208)
6 d1no8a_ d.58.7.1 (A:) Nuclear 2.4 1.5E+02 0.011 20.5 -0.4 31 36-66 6-36 (78)
7 d1ymga1 f.19.1.1 (A:6-239) Aqu 2.4 1.3E+03 0.098 18.5 10.8 59 144-202 78-138 (234)
8 d1fs0g_ c.49.2.1 (G:) ATP synt 2.3 1.9E+02 0.014 24.2 0.1 14 218-231 59-74 (230)
9 d1v54c_ f.25.1.1 (C:) Mitochon 2.2 1.2E+03 0.089 19.4 5.9 11 376-386 123-133 (259)
10 d2jdig1 c.49.2.1 (G:1-272) ATP 2.2 2E+02 0.015 24.5 0.1 6 225-230 76-81 (272)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.36 E-value=6.1e+02 Score=20.60 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHHHH-HHHHHHHHhhhhhccCccchhHHHHhHHhhccchhhHhHHHHHHHH
Q 012045 381 LIANVSA-ACVMAALATVKKAVDTKTCNTVASGIQFGLLGCLSTVSTFMAEFNA 433 (472)
Q Consensus 381 f~aNvlG-sflLgil~~l~~~~~~~~~~~v~~~l~tGFcG~LTTfSTfv~E~~~ 433 (472)
.+.|++- |+++.++.-+....+....+.+ .+++-.+=++|+|...+.|..=
T Consensus 4 y~~n~~~P~~~~~~l~~~~f~lp~~~~~r~--~l~it~lLs~~vf~~~v~~~lP 55 (260)
T d1oedc_ 4 YVINFITPCVLISFLASLAFYLPAESGEKM--STAISVLLAQAVFLLLTSQRLP 55 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHHHHeeeCCCCCCcE--EeeHHHHHHHHHHHHHHHHhCC
Confidence 4556654 5555555444332211112223 3333334456777777766554
No 2
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=4.03 E-value=3.6e+02 Score=22.29 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=26.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012045 437 STSPWRAYAYALITILISFGLGILIYSVPVWT 468 (472)
Q Consensus 437 ~~~~~~A~~Y~~~Si~~gll~~~lg~~~~~Wt 468 (472)
+-.+.++..|.+.+++.+++...+.+..+...
T Consensus 75 ~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~~~ 106 (231)
T d1rc2a_ 75 RFPAKEVVGYVIAQVVGGIVAAALLYLIASGK 106 (231)
T ss_dssp CSCTTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44466799999999999999999988876543
No 3
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.22 E-value=63 Score=23.62 Aligned_cols=18 Identities=11% Similarity=-0.117 Sum_probs=14.5
Q ss_pred cceecccccccCCccccC
Q 012045 72 SLCLSINNVLEDGMEFPI 89 (472)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~ 89 (472)
+-+..+|..++||+++.|
T Consensus 56 g~~v~l~~~L~dgDvVeI 73 (76)
T d1wxqa2 56 KRRVGEDYELQFNDIVKI 73 (76)
T ss_dssp CSBCCTTCCCCTTEEEEE
T ss_pred CEECCCCcCccCCCEEEE
Confidence 457888999999988765
No 4
>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus thermophilus [TaxId: 274]}
Probab=2.77 E-value=1.6e+02 Score=25.08 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=17.7
Q ss_pred cccCccccccccc-cc--c-ccCCCCC
Q 012045 40 SQIDDEIESESVS-EA--G-DIGDRAL 62 (472)
Q Consensus 40 ~~~~~~~~~~~~~-~~--~-~~~~~~~ 62 (472)
.+++|-.+-|.+. +| | ||||-..
T Consensus 113 ~~~~dPV~VE~I~A~AhaGiDIGdT~I 139 (193)
T d1v8da_ 113 LRFRDPVMVESLKAQAHGGMDIGGVLI 139 (193)
T ss_dssp HHSSSEEEESCCTTCBSEEEEESSCCC
T ss_pred HhCCCCEEEEEEecccccCccccccee
Confidence 4678889999886 44 6 9999754
No 5
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=2.62 E-value=78 Score=27.14 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=8.2
Q ss_pred ccccccCCCCCC
Q 012045 52 SEAGDIGDRALP 63 (472)
Q Consensus 52 ~~~~~~~~~~~~ 63 (472)
--=||.|||++-
T Consensus 195 PGlGDaGDR~fg 206 (208)
T d1v9sa1 195 PGLGDAGDRIYG 206 (208)
T ss_dssp SSCSCHHHHHHT
T ss_pred CCCCChHHhccC
Confidence 445788888753
No 6
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.42 E-value=1.5e+02 Score=20.49 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.6
Q ss_pred cccccccCccccccccccccccCCCCCCCCC
Q 012045 36 SAVASQIDDEIESESVSEAGDIGDRALPSKR 66 (472)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (472)
.++|+.++++.=.|-+++.|.|-+-.+...+
T Consensus 6 ~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~ 36 (78)
T d1no8a_ 6 SNLDFGVSDADIQELFAEFGTLKKAAVHYDR 36 (78)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEEESCSS
T ss_pred ECCCCCCCHHHHHHHHHHhCCCeEEEEEEee
Confidence 4688888888888889999988665555443
No 7
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.40 E-value=1.3e+03 Score=18.49 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CCCCC-CCCCCCccccchhHHHHHHHHHHHH
Q 012045 144 SLEYISCLVHLAVFGILGVLSRYLLEKLF-GPSVA-GVTSDGSILYLDLPSNMVGSFLMGW 202 (472)
Q Consensus 144 ~~~~l~~~l~v~lggilGalaR~~L~~l~-~~~~~-~~t~~~~~~~~tl~vNvvGcflMG~ 202 (472)
+.+.+..++.=.+|+++|+++=+.+..-. ..... ..+.+.......+...+++++++=+
T Consensus 78 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~ 138 (234)
T d1ymga1 78 LLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVL 138 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHH
Confidence 33444555666889999998766653211 00000 0111222223346777777766543
No 8
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]}
Probab=2.27 E-value=1.9e+02 Score=24.21 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=10.5
Q ss_pred HHHHHhh--hcccccc
Q 012045 218 LVIGLNT--GYLGSLT 231 (472)
Q Consensus 218 l~~gLtT--GFcGsfT 231 (472)
+.+.+|+ |+||+|-
T Consensus 59 ~~ivitSDrGLCG~~N 74 (230)
T d1fs0g_ 59 GYLVVSTDRGLCGGLN 74 (230)
T ss_dssp EEEEECCSSSCSTTHH
T ss_pred EEEEEecCcccccccc
Confidence 4556776 9999974
No 9
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.20 E-value=1.2e+03 Score=19.35 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=5.8
Q ss_pred cchhhHHHHHH
Q 012045 376 VPFGTLIANVS 386 (472)
Q Consensus 376 fPlGTf~aNvl 386 (472)
.|+..-..|-+
T Consensus 123 ~~~~lpllnT~ 133 (259)
T d1v54c_ 123 NPLEVPLLNTS 133 (259)
T ss_dssp CTTSHHHHHHH
T ss_pred chhhhHHHHHH
Confidence 44555556654
No 10
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.17 E-value=2e+02 Score=24.51 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=0.0
Q ss_pred hccccc
Q 012045 225 GYLGSL 230 (472)
Q Consensus 225 GFcGsf 230 (472)
|+||+|
T Consensus 76 GLcG~f 81 (272)
T d2jdig1 76 GLCGAI 81 (272)
T ss_dssp CCSTTH
T ss_pred CCCCCc
Done!