Query 012047
Match_columns 472
No_of_seqs 119 out of 141
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 20:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 79.1 2.8 9.6E-05 45.0 6.4 87 285-390 119-205 (562)
2 3hls_A Guanylate cyclase solub 65.1 2.4 8E-05 33.5 1.4 16 385-400 49-64 (66)
3 3twe_A Alpha4H; unknown functi 60.7 12 0.00042 24.8 4.0 23 248-270 2-24 (27)
4 3f4m_A Tumor necrosis factor, 54.3 1.3E+02 0.0045 27.6 13.1 120 231-374 29-157 (161)
5 1deq_A Fibrinogen (alpha chain 50.2 1.9E+02 0.0066 30.0 12.8 54 362-419 181-234 (390)
6 4g63_A Cytosolic IMP-GMP speci 31.8 58 0.002 34.3 5.8 10 233-242 325-334 (470)
7 3ssq_A Carbon dioxide concentr 23.6 42 0.0014 29.6 2.5 41 107-147 2-49 (122)
8 3b0c_W CENP-W, centromere prot 19.7 2.9E+02 0.0099 21.5 6.5 53 149-205 3-55 (76)
9 3mp7_B Preprotein translocase 17.8 28 0.00096 27.2 0.1 32 186-217 2-33 (61)
10 1fyj_A Multifunctional aminoac 17.6 1.5E+02 0.005 22.3 4.1 47 286-336 3-49 (57)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.08 E-value=2.8 Score=45.01 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHH
Q 012047 285 VTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYAN 364 (472)
Q Consensus 285 l~~lqqel~~QRk~Vk~LK~~SLWsrt~d~vV~~LvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYAN 364 (472)
+..|+.+|..|-+.++.|+. ++++.+.+|-|.=--|-..|..-.|+....... .. -| =-|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~--~v----d~------~sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR--EV----DL------KDYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCC--CC----CH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchhee--ec----ch------HHHHH
Confidence 45666666666666666664 466666666666666777777777876532211 11 11 14999
Q ss_pred HHHHHHHHhhCCCCCCCchhHHhhcc
Q 012047 365 IINQIDNIVSRPSSLPPNMRDTLYNG 390 (472)
Q Consensus 365 VIi~IEkLvs~P~~v~~~aRD~LYqm 390 (472)
+==|+|.+. ...+.|...|..||.|
T Consensus 181 ~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 181 QQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHh-hcccCCccccccchhc
Confidence 999999976 5777888888899876
No 2
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=65.12 E-value=2.4 Score=33.53 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=12.2
Q ss_pred HHhhccCchHHHHHHh
Q 012047 385 DTLYNGLPATVKMNLR 400 (472)
Q Consensus 385 D~LYqmLP~sIRsaLR 400 (472)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 5578888888877776
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=60.74 E-value=12 Score=24.80 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 012047 248 HTSELYHEYNALDRFELDYRRKL 270 (472)
Q Consensus 248 ~Ta~LY~ELeaL~~lEq~~rRk~ 270 (472)
+.-+||.|||-|.+-=..+|+|+
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999998876555555544
No 4
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=54.28 E-value=1.3e+02 Score=27.58 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHhh-cc-CCCCCCCcchHHHHHHHHHHHHHHHh
Q 012047 231 PRGEAETRMKELTTLAQHTSELYH-------EYNALDRFELDYRRKLEEL-DS-LNLPRKGEGVTFLHSDLKQQRKLVRS 301 (472)
Q Consensus 231 ~~k~ae~k~kkmerlV~~Ta~LY~-------ELeaL~~lEq~~rRk~~~~-~~-~~~~~~g~~l~~lqqel~~QRk~Vk~ 301 (472)
.+++|++.++.+.+.|-...-||+ ||..+++|-+.+ +.+.-. -+ .- ....=....|.+-+..-|+....
T Consensus 29 nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~-~~~amt~iSF~e-VdfTfD~~~L~~~L~ec~~lL~~ 106 (161)
T 3f4m_A 29 SRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKL-RQGAMTALSFGE-VDFTFEAAVLAGLLTECRDVLLE 106 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHHHHHHHHTS-TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHH-HHHHHHHhhhhc-cCccccHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999996 566665554444 222100 00 00 00001234466666655555544
Q ss_pred hhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHhh
Q 012047 302 LKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVS 374 (472)
Q Consensus 302 LK~~SLWsrt~d~vV~~LvriV~~i~~rI~~VFG~~~~~~~~~~~~~~~~TLG~AgLALHYANVIi~IEkLvs 374 (472)
|=+.-|=-+| +.||.+||+-.....- .... .++ -..-|--+|+--+++|+-
T Consensus 107 lv~~HLT~KS---------------~~Ri~~vF~~f~~~ef-L~~l-----f~~-~~~~~L~kI~~~Lnklld 157 (161)
T 3f4m_A 107 LVEHHLTPKS---------------HGRIRHVFDHFSDPGL-LTAL-----YGP-DFTQHLGKICDGLRKLLD 157 (161)
T ss_dssp HHTTTSCHHH---------------HHHHHHHHHHHTCHHH-HHHH-----TSG-GGHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCcch---------------HHHHHHHHHHhCCHHH-HHHH-----hCc-HHHHHHHHHHHHHHHHHh
Confidence 4333333332 6788888864432110 0000 000 344566677777777653
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.24 E-value=1.9e+02 Score=29.97 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCchhHHhhccCchHHHHHHhhhcccccCCCCCcHHHHHH
Q 012047 362 YANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKA 419 (472)
Q Consensus 362 YANVIi~IEkLvs~P~~v~~~aRD~LYqmLP~sIRsaLRskLr~~~~~de~la~ewk~ 419 (472)
|=|+-=|+|.+. .-.+.|.-.|-.|+.+=|..++..+..+-|+... -...||++
T Consensus 181 ye~qqKQL~qv~-a~~llP~~~~q~lp~LK~~p~kd~vP~~fKsq~q---~a~~Ew~a 234 (390)
T 1deq_A 181 YKNQQKQLEQVI-AINLLPSRDIQYLPILKMSTITGPVPREFKSQLQ---EAPLEWKA 234 (390)
T ss_pred HHHHHHHHHhhh-hhccccccccccccccccccccccCChhhccccc---ccchHHHH
Confidence 556666777754 4556666566677777777777666666654332 12346663
No 6
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=31.79 E-value=58 Score=34.26 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=5.5
Q ss_pred hHHHHHHHHH
Q 012047 233 GEAETRMKEL 242 (472)
Q Consensus 233 k~ae~k~kkm 242 (472)
+|.+..++..
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665443
No 7
>3ssq_A Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 2.20A {Thermosynechococcus elongatus}
Probab=23.60 E-value=42 Score=29.60 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=19.1
Q ss_pred cccccCCCCCCCcccccccCCCeeeee-------hHHHHHHHHHHHhh
Q 012047 107 GSSMSSLNASSGFISGVTSKGNKISIL-------AFEVANTIAKGANL 147 (472)
Q Consensus 107 gssm~~l~~~~gf~sg~~~kg~kIgIL-------AFEVAntMsK~~~L 147 (472)
|||--.-.+++|.+.....-+..|||+ ++++|.+|.|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~M~~AiGiIE~~g~~~aI~AADam~KAA~V 49 (122)
T 3ssq_A 2 GSSHHHHHHSSGLVPRGSHMPIAVGMIETRGFPAVVEAADAMVKAARV 49 (122)
T ss_dssp -------------------CCCEEEEEEEESHHHHHHHHHHHHHHSSE
T ss_pred CccccccccccCCCCccchhhcCEEEEEecCHHHHHHHHHHHhhhCCc
Confidence 455555557778877666666689998 89999999999874
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=19.71 E-value=2.9e+02 Score=21.53 Aligned_cols=53 Identities=4% Similarity=-0.050 Sum_probs=42.5
Q ss_pred hhCCHHHHHHHhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012047 149 QSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNL 205 (472)
Q Consensus 149 ~SLSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~r 205 (472)
+.|--..|.|+=.++++. + -||+|-.+++..+|-|..+.|-.=|.+.++-.+|
T Consensus 3 ~~LP~A~V~rI~K~~~p~--~--~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~r 55 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPH--L--RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKS 55 (76)
T ss_dssp -CCCHHHHHHHHHHHCTT--C--EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccHHHHHHHHhCCC--C--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356777888888888873 2 4899999999999999999998888888765443
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=17.76 E-value=28 Score=27.20 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcccCchhHH
Q 012047 186 ADKREEFDVFLREVIRFGNLCKDPQWHNLDRY 217 (472)
Q Consensus 186 AEk~eeL~~~A~~VaRlG~rC~DP~lh~fdr~ 217 (472)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 46678888999999999999999999887654
No 10
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=17.60 E-value=1.5e+02 Score=22.32 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 012047 286 TFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGS 336 (472)
Q Consensus 286 ~~lqqel~~QRk~Vk~LK~~SLWsrt~d~vV~~LvriV~~i~~rI~~VFG~ 336 (472)
..++..|..|.-.||.||...-=...++..|..| ..+-......-|.
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~L----l~lK~~~~~~tg~ 49 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQL----LSLKAEYKEKTGQ 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH----HHHHHHHHHHhCC
Confidence 5788999999999999998654445566666665 4455555555564
Done!