Query 012047
Match_columns 472
No_of_seqs 119 out of 141
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 20:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012047.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012047hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 30.2 50 0.0037 23.4 5.7 51 156-207 5-55 (66)
2 d2bdea1 c.108.1.23 (A:2-459) C 29.0 41 0.003 32.9 6.5 35 233-267 324-358 (458)
3 d2pjqa1 a.211.1.1 (A:1-215) Un 21.2 34 0.0025 29.5 3.8 66 182-247 118-206 (215)
4 d1htaa_ a.22.1.2 (A:) Archaeal 20.0 46 0.0033 23.5 3.7 52 151-207 4-55 (68)
5 d1r6ta1 a.16.1.3 (A:7-60) N-te 19.5 56 0.0041 23.3 4.0 48 284-335 2-49 (54)
6 d1ojta2 c.3.1.5 (A:276-400) Di 19.4 22 0.0016 28.1 1.9 38 80-119 24-61 (125)
7 d1a5ta1 a.80.1.1 (A:208-330) d 18.1 13 0.00094 30.4 0.2 29 420-451 33-61 (123)
8 d1ku5a_ a.22.1.2 (A:) Archaeal 17.9 67 0.0049 22.6 4.2 44 163-207 11-54 (66)
9 d1v59a2 c.3.1.5 (A:161-282) Di 17.0 21 0.0015 27.8 1.2 36 82-119 23-58 (122)
10 d1dxla2 c.3.1.5 (A:153-275) Di 16.8 21 0.0015 27.7 1.2 38 81-120 24-61 (123)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.22 E-value=50 Score=23.39 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=38.0
Q ss_pred HHHHhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012047 156 IQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (472)
Q Consensus 156 I~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (472)
++|.|. ||++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|..
T Consensus 5 ~srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 5 PARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred hHHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345555 444333335899999999999999999999999999999877654
No 2
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=28.99 E-value=41 Score=32.88 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012047 233 GEAETRMKELTTLAQHTSELYHEYNALDRFELDYR 267 (472)
Q Consensus 233 k~ae~k~kkmerlV~~Ta~LY~ELeaL~~lEq~~r 267 (472)
+|.+..++...+-......|-.-+..+.+++|.+.
T Consensus 324 ~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 358 (458)
T d2bdea1 324 EELGEEIASQIRALPIEKKIGEAMAIKKELEQKYV 358 (458)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 66666665554433333333333333445566553
No 3
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=21.20 E-value=34 Score=29.49 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhh---ccCCCcccC----------------chhHHHhhhhh--hhccCCCchhHHHHH
Q 012047 182 RIAAADKREEFDV--FLREVIRFG---NLCKDPQWH----------------NLDRYFSNLKS--EYLNHRQPRGEAETR 238 (472)
Q Consensus 182 ~LA~AEk~eeL~~--~A~~VaRlG---~rC~DP~lh----------------~fdr~F~~l~~--~~~~~~~~~k~ae~k 238 (472)
-+--||+++.|-. +|+..+--| +.=.||... .++|+|++|.. +..--...++.|+.+
T Consensus 118 Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~R 197 (215)
T d2pjqa1 118 VVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHR 197 (215)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhhhhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567899998886 566666333 333455432 48899988853 332222345778888
Q ss_pred HHHHHHHHH
Q 012047 239 MKELTTLAQ 247 (472)
Q Consensus 239 ~kkmerlV~ 247 (472)
.+-|+.|++
T Consensus 198 ~~~m~~Fl~ 206 (215)
T d2pjqa1 198 TAVMHEFVD 206 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 4
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=19.98 E-value=46 Score=23.55 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCHHHHHHHhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012047 151 LSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (472)
Q Consensus 151 LSd~eI~rLr~evL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (472)
|.-..|.++ +++-|+.+ ||+|--+++.=++-+...+|-.-|..+++=++|..
T Consensus 4 LP~a~I~ri----~k~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGRI----IKNAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHHH----HHHTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHH----HHHCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 455566664 44557776 89999999999999999999999999999888876
No 5
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.51 E-value=56 Score=23.33 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhC
Q 012047 284 GVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFG 335 (472)
Q Consensus 284 ~l~~lqqel~~QRk~Vk~LK~~SLWsrt~d~vV~~LvriV~~i~~rI~~VFG 335 (472)
++.+|.++|..|=-.||.||..--=....|..|.+| .-+=+..+.+.|
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~L----L~LK~~yk~~tG 49 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKML----VSLKMSYKAAAG 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH----HHHHHHHHHhhC
Confidence 467899999999999999997543333444444444 334445555554
No 6
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=19.45 E-value=22 Score=28.06 Aligned_cols=38 Identities=32% Similarity=0.574 Sum_probs=29.2
Q ss_pred cccccccccccccccccchhhHHhhhccccccCCCCCCCc
Q 012047 80 KMTQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGF 119 (472)
Q Consensus 80 ~~~~~~~~lg~a~~~g~~kav~vldtlgssm~~l~~~~gf 119 (472)
++++.--++| +|.+|++-| +.+-.+|+.+|=+..++.+
T Consensus 24 ~~p~~vvIiG-gG~IG~E~A-~~~~~~G~~Vtive~~~~i 61 (125)
T d1ojta2 24 EVPGKLLIIG-GGIIGLEMG-TVYSTLGSRLDVVEMMDGL 61 (125)
T ss_dssp CCCSEEEEES-CSHHHHHHH-HHHHHHTCEEEEECSSSSS
T ss_pred ccCCeEEEEC-CCHHHHHHH-HHhhcCCCEEEEEEeeccc
Confidence 4555667888 999999988 8999999998876555333
No 7
>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli [TaxId: 562]}
Probab=18.13 E-value=13 Score=30.38 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=19.4
Q ss_pred HHHHHHhhHhhhhhhhhhhcccCcchhhhhhc
Q 012047 420 EMEKTLQWLVPVATNTTKAHQGFGWVGEWANT 451 (472)
Q Consensus 420 amekiL~WLaPmAhNTirwh~gfgwvgEwa~~ 451 (472)
.....|.||.=+-.+.+||||| +++|.|.
T Consensus 33 ~~~~~L~WL~~lL~DalK~q~g---~~~~vN~ 61 (123)
T d1a5ta1 33 QAPARLHWLATLLMDALKRHHG---AAQVTNV 61 (123)
T ss_dssp THHHHHHHHHHHHHHHTCC---------CCCT
T ss_pred cHHHHHHHHHHHHHHHHHHhcC---chhhccH
Confidence 3567899999999999999987 4567654
No 8
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=17.94 E-value=67 Score=22.57 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=37.0
Q ss_pred hccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 012047 163 VLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (472)
Q Consensus 163 vL~SeGV~~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (472)
|++..|+. -||.|--+++.-|+-+..+.|-.-|..++.-++|..
T Consensus 11 I~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 11 LIRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445665 489999999999999999999999999998877764
No 9
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.97 E-value=21 Score=27.76 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=27.7
Q ss_pred cccccccccccccccchhhHHhhhccccccCCCCCCCc
Q 012047 82 TQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGF 119 (472)
Q Consensus 82 ~~~~~~lg~a~~~g~~kav~vldtlgssm~~l~~~~gf 119 (472)
++.--++| +|.+|++-| .+|..+|+.+|=+..++-+
T Consensus 23 p~~~vIiG-~G~ig~E~A-~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMG-SVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp CSEEEEEC-CSHHHHHHH-HHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEEC-CCchHHHHH-HHHHhhCcceeEEEecccc
Confidence 44557888 999999987 7888999999876555434
No 10
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=16.80 E-value=21 Score=27.74 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=29.7
Q ss_pred ccccccccccccccccchhhHHhhhccccccCCCCCCCcc
Q 012047 81 MTQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGFI 120 (472)
Q Consensus 81 ~~~~~~~lg~a~~~g~~kav~vldtlgssm~~l~~~~gf~ 120 (472)
+++.-.++| +|.+|++-| .++-.+|+.+|=+..++.+.
T Consensus 24 ~p~~~viiG-~G~iglE~A-~~~~~~G~~Vtvi~~~~~~l 61 (123)
T d1dxla2 24 IPKKLVVIG-AGYIGLEMG-SVWGRIGSEVTVVEFASEIV 61 (123)
T ss_dssp CCSEEEESC-CSHHHHHHH-HHHHHHTCEEEEECSSSSSS
T ss_pred cCCeEEEEc-cchHHHHHH-HHHHhcCCeEEEEEEccccC
Confidence 445567788 999999988 78899999999876665444
Done!