Query 012049
Match_columns 472
No_of_seqs 330 out of 2230
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2493 Na+/Pi symporter [Inor 100.0 5.3E-62 1.1E-66 504.5 21.2 332 141-472 23-408 (512)
2 PF01384 PHO4: Phosphate trans 100.0 4E-49 8.6E-54 401.8 21.4 232 160-471 1-235 (326)
3 COG0306 PitA Phosphate/sulphat 100.0 1E-47 2.2E-52 389.6 21.9 222 144-471 3-224 (326)
4 COG0306 PitA Phosphate/sulphat 100.0 1E-38 2.2E-43 324.0 16.5 196 94-304 127-325 (326)
5 PF01384 PHO4: Phosphate trans 100.0 1.1E-35 2.4E-40 303.2 14.2 190 92-294 111-326 (326)
6 KOG2493 Na+/Pi symporter [Inor 100.0 3E-32 6.4E-37 283.4 3.7 160 137-306 340-510 (512)
7 PRK10712 PTS system fructose-s 83.1 24 0.00053 39.6 14.1 181 105-303 348-553 (563)
8 PRK10478 putative PTS system f 72.5 90 0.0019 33.2 13.9 77 102-180 131-215 (359)
9 PRK09765 PTS system 2-O-a-mann 65.7 78 0.0017 36.0 12.5 28 281-308 601-628 (631)
10 PF06570 DUF1129: Protein of u 64.1 38 0.00083 32.6 8.5 22 344-366 179-200 (206)
11 TIGR00341 conserved hypothetic 58.7 38 0.00082 35.6 7.8 65 56-123 77-160 (325)
12 PF14342 DUF4396: Domain of un 51.8 2E+02 0.0043 26.5 11.0 64 248-317 8-73 (139)
13 PF09512 ThiW: Thiamine-precur 47.0 2E+02 0.0044 27.1 9.7 54 250-308 65-118 (150)
14 PRK10692 hypothetical protein; 39.2 87 0.0019 27.0 5.5 56 180-239 3-59 (92)
15 PF13303 PTS_EIIC_2: Phosphotr 38.4 5E+02 0.011 27.4 16.4 107 186-308 199-321 (327)
16 PF10762 DUF2583: Protein of u 36.5 1.1E+02 0.0024 26.2 5.7 56 180-239 3-59 (89)
17 PRK11404 putative PTS system 34.5 6.7E+02 0.015 27.7 13.1 29 281-309 442-470 (482)
18 COG1288 Predicted membrane pro 33.0 74 0.0016 34.9 5.3 101 139-256 301-403 (481)
19 TIGR00835 agcS amino acid carr 31.4 5.8E+02 0.013 27.8 11.8 67 146-212 129-197 (425)
20 TIGR02121 Na_Pro_sym sodium/pr 29.6 6.2E+02 0.014 27.4 11.9 45 239-283 147-191 (487)
21 PRK01844 hypothetical protein; 28.6 1.1E+02 0.0023 25.5 4.3 41 106-147 6-46 (72)
22 PRK10929 putative mechanosensi 27.3 1E+03 0.022 29.4 13.8 26 238-264 889-914 (1109)
23 TIGR00836 amt ammonium transpo 24.2 6.3E+02 0.014 27.3 10.5 113 175-311 274-386 (403)
24 PLN02953 phosphatidate cytidyl 22.3 70 0.0015 34.5 2.8 13 100-112 100-112 (403)
25 PF15461 BCD: Beta-carotene 15 22.1 8.1E+02 0.018 24.6 11.0 68 269-337 147-226 (259)
26 PF14150 YesK: YesK-like prote 21.8 4.4E+02 0.0094 22.4 6.9 29 305-333 18-47 (81)
27 COG4858 Uncharacterized membra 21.6 4.4E+02 0.0095 26.0 7.7 18 349-366 198-215 (226)
28 PRK11281 hypothetical protein; 21.5 9.1E+02 0.02 29.8 12.0 28 236-264 890-917 (1113)
29 PF06738 DUF1212: Protein of u 20.4 7E+02 0.015 23.2 9.0 31 228-259 158-188 (193)
No 1
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-62 Score=504.51 Aligned_cols=332 Identities=36% Similarity=0.575 Sum_probs=283.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhcCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCch
Q 012049 141 KTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKD 220 (472)
Q Consensus 141 ~~~~~~~l~ii~a~~~Af~~GaNDvaNa~G~~Vgs~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p 220 (472)
.-.|..+++++.|++++|++||||+||++|+.||||.++.+||.++++++|.+|+.+.|++|++|++++++|.+.|+++|
T Consensus 23 ~~~w~livg~i~afll~f~mGANDvaNsfgtSVgSgvltl~QA~iLAsife~lGsvl~G~~V~dt~r~gVId~s~y~~~~ 102 (512)
T KOG2493|consen 23 SFLWALIVGFIVAFLLAFGMGANDVANSFGTSVGSGVLTLKQAYILASIFETLGSVLLGASVTDTMRKGVIDFSIYNDTP 102 (512)
T ss_pred hhHHHHHHHHHHHHHHhcccCccccccccccccccCceehHHHHHHHHHHHHHHHHHccchhhhhHHhceeehHHhcCCH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Q 012049 221 TLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKC 300 (472)
Q Consensus 221 ~~~~~~~~aAl~aaai~lliat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~l 300 (472)
...|+++.+++.+++.|+++||.+++||||||+++|+-+|++++.+|.+++.|..+.+|+.+|+++|+++++++.++|.+
T Consensus 103 ~~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi~w~~v~~iv~swfiSpilsg~~s~ilf~~ 182 (512)
T KOG2493|consen 103 KTLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGIVWMEVIKIVASWFISPILSGIISAILFFL 182 (512)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccceeehhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhhhhhhhhHHHHHHHHHHhhheec----cCC--CcchH--HHHHHHHHHHHHHHH----HHHHHHHHhh
Q 012049 301 IRRFVYSAPNPGQAAAAAAPIAVFVGVTGISFAAF----PLS--KIFPL--ALAQALAFGAAGAFL----VYRIIHKQLG 368 (472)
Q Consensus 301 l~~~il~~~~~~~~a~~~~P~~~~~t~~i~~~~i~----~~~--~~~~~--~~~i~l~~g~~~~~~----~~~~lrr~~~ 368 (472)
++..+++++||.++..+.+|++++.++.+++|.++ |.+ +++|. ...+++++|++++++ ++|++||++.
T Consensus 183 v~~svl~~~~p~~~gl~~lp~~y~~~~~~n~f~ivy~Gs~~l~~d~l~~~~~~~is~~~g~i~a~i~~f~v~p~~~~ki~ 262 (512)
T KOG2493|consen 183 VDHSVLRAANPVKNGLRLLPVFYFITVSINVFGIVYDGSKVLGLDSLPLWATILISVGLGVIAAFIVYFFVRPFMRRKIN 262 (512)
T ss_pred HHHHHHHhcCchhhchhhcchhhhhhhhheeeeEEecCcceeeeccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc
Confidence 99999999999999999999999999999999998 212 56665 566777787777655 6777777764
Q ss_pred hhhhcccCC---C-----------------CCC--CCccccc------------------cccccccccCCCCCc--chh
Q 012049 369 HLLVKSTSL---Q-----------------PEP--KDTNIHN------------------KSIGIFSDIAGPKGT--QLE 406 (472)
Q Consensus 369 ~l~~~~~~~---~-----------------~~~--~~~~~~~------------------~~~~~~~~~~~~~~~--~~~ 406 (472)
+-.+.++.+ | +++ |.+..+. +..++..++..|... +.|
T Consensus 263 ~~k~~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~e~~~~~~~~~~t~~~~~~P~~~~~qgk~~~~~~~l~p~~~r~d~e 342 (512)
T KOG2493|consen 263 RGKETDEAPPVSEVSGSSARRELGKSVEIKEESAVESTVKNLRIQNTSAITKSPSTSESQGKIRKLEKWLWPDVTRVDSE 342 (512)
T ss_pred cccccccCCCccchhccccccccccccchhccccccccccchhhcchhhccCCCCCccccCccchhheeecCCCCcccHH
Confidence 311111000 0 000 0000000 000111122223333 558
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchHHHHHHhhhheecC
Q 012049 407 IVYGVFGYMQVLSACFMSFAHGGNDVSNAIGPLAAALSILHGGASGTKIVIPIDVLAWGGFGIVGD 472 (472)
Q Consensus 407 ~v~~~F~~lQv~sA~~~SFaHGaNDVaNAiGPlaai~~i~~~g~~~~~~~iP~WIL~~Gg~GIv~~ 472 (472)
+++++|+++|++|||+++||||+|||+||+||++++|.+|++|.+.+|.++|+|+|++||+|||+.
T Consensus 343 ~v~~lFs~lQvlTACF~sFAHGaNDVsNAIgPL~Al~~iy~~g~v~~k~~~Pi~vLlyG~~aicvG 408 (512)
T KOG2493|consen 343 EVSRLFSTLQVLTACFASFAHGANDVSNAIGPLVALYLIYRTGYVEQKEETPIYVLLYGGFAICVG 408 (512)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHHHHHcCCccceeccceeeeecccceeeee
Confidence 899999999999999999999999999999999999999999999999999999999999999973
No 2
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=100.00 E-value=4e-49 Score=401.78 Aligned_cols=232 Identities=47% Similarity=0.774 Sum_probs=215.3
Q ss_pred hhhhhhhhHHHHhhhcCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccC-CchhHHHHHHHHHHHHHHHHH
Q 012049 160 IGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQ-GKDTLLFAGLLSSLAAAGTWL 238 (472)
Q Consensus 160 ~GaNDvaNa~G~~Vgs~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~-~~p~~~~~~~~aAl~aaai~l 238 (472)
+|+||++|++||.||+|++++++|++++++++++|+++.|.+|.+|++++|++.+.++ ++|..++.+++|+++++++|+
T Consensus 1 ~GaND~an~~gt~Vgs~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~ 80 (326)
T PF01384_consen 1 NGANDAANSFGTAVGSRALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWL 80 (326)
T ss_pred CCccchHHHHHHHHhcCccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999887 678888999999999999999
Q ss_pred HHHHhcCCccccchhhhhhHHHHHHhhcCCCccchh-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCChhhhhhh
Q 012049 239 QVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWS-SLARVTSSWVISPILGALVSFLVYKCIRRFVYSAPNPGQAAAA 317 (472)
Q Consensus 239 liat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~-~~~~Iv~sWilTP~ia~ila~~l~~ll~~~il~~~~~~~~a~~ 317 (472)
+++|++|+|+||||+++|+++|+|++.+|.+.+||. .+.+|+.+|++||+++++++|++|+++++++++++++.++..+
T Consensus 81 ~i~t~~glPvStThalvGal~G~~l~~~g~~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~~~~~~~~~~~~~~~~ 160 (326)
T PF01384_consen 81 LIATWLGLPVSTTHALVGALIGAGLASGGFSAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIRRIFLRRKNPVKRALR 160 (326)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999889999999 5999999999999999999999999999999998888888777
Q ss_pred hhHHHHHHHHHHhhheeccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCcccccccccccccc
Q 012049 318 AAPIAVFVGVTGISFAAFPLSKIFPLALAQALAFGAAGAFLVYRIIHKQLGHLLVKSTSLQPEPKDTNIHNKSIGIFSDI 397 (472)
Q Consensus 318 ~~P~~~~~t~~i~~~~i~~~~~~~~~~~~i~l~~g~~~~~~~~~~lrr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (472)
..|+++ .+
T Consensus 161 ~~~~~~---------------------------------------~~--------------------------------- 168 (326)
T PF01384_consen 161 PLPILF---------------------------------------FD--------------------------------- 168 (326)
T ss_pred ccccch---------------------------------------hh---------------------------------
Confidence 777652 00
Q ss_pred CCCCCcchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCCC-CCCchHHHHHHhhhheec
Q 012049 398 AGPKGTQLEIVYGVFGYMQVLSACFMSFAHGGNDVSNAIGPLAAALSILHGGASGT-KIVIPIDVLAWGGFGIVG 471 (472)
Q Consensus 398 ~~~~~~~~~~v~~~F~~lQv~sA~~~SFaHGaNDVaNAiGPlaai~~i~~~g~~~~-~~~iP~WIL~~Gg~GIv~ 471 (472)
+++|+.|+++|++++|++||+||+||+||++||+++++.+|.+|...+ +.++|+|++++||++|++
T Consensus 169 --------~~~~~~~~~l~i~sa~~~sfahGaND~~naig~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~i~~ 235 (326)
T PF01384_consen 169 --------PRVEKIFRFLQILSAAFVSFAHGANDVANAIGPLAAILIIYNTGSVNSGKAEIPWWILLLGGLAIAL 235 (326)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCcccccccChHHHHHHHHHHHHH
Confidence 246789999999999999999999999999999999999999886553 578899999999999875
No 3
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-47 Score=389.62 Aligned_cols=222 Identities=45% Similarity=0.762 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhcCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHH
Q 012049 144 LLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLL 223 (472)
Q Consensus 144 ~~~~l~ii~a~~~Af~~GaNDvaNa~G~~Vgs~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~ 223 (472)
.+..+.++.+++|+|++|+||++|+|||.||+|+++++||++++++++++|+++.|.+|.+|+++++++++.++. ...
T Consensus 3 ~l~~~~li~~l~~a~~iGand~ana~gtaVgs~alt~~~Av~laavf~f~Ga~l~g~~V~~TI~~~iv~~~~~~~--~~~ 80 (326)
T COG0306 3 LLLVLALIAALFFAFNIGANDTANAVGTAVGSGALTPRQAVLLAAVFNFLGALLGGGNVAETIGSGIVDPGLLND--SLT 80 (326)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhhhhhhccCCccHHHHHHHHHHHHHHHHHHcCccHHHHHhcCCCCchhccc--hhh
Confidence 356677889999999999999999999999999999999999999999999999999999999999999877653 566
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012049 224 FAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRR 303 (472)
Q Consensus 224 ~~~~~aAl~aaai~lliat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~~ 303 (472)
..+++++++++++|++++|++|+|+||||+++|+++|+|++..+. .++|+.+.+|+.+|+++|+++++++|++|+.+++
T Consensus 81 ~~~~~aaLlaa~~w~~ia~~~GiP~StshaiiGaiiG~gla~~~~-~~~~~~~~~Iv~swvlsPii~~~ia~~l~~~~~~ 159 (326)
T COG0306 81 PAGVLAALLAAILWNLIATYLGIPVSTSHALIGAIIGAGLALGGG-VVDWGVLGKIVASWVLSPILGGVLAYLLYSLLRR 159 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999997654 6899999999999999999999999999999887
Q ss_pred HHhcCCChhhhhhhhhHHHHHHHHHHhhheeccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCC
Q 012049 304 FVYSAPNPGQAAAAAAPIAVFVGVTGISFAAFPLSKIFPLALAQALAFGAAGAFLVYRIIHKQLGHLLVKSTSLQPEPKD 383 (472)
Q Consensus 304 ~il~~~~~~~~a~~~~P~~~~~t~~i~~~~i~~~~~~~~~~~~i~l~~g~~~~~~~~~~lrr~~~~l~~~~~~~~~~~~~ 383 (472)
.+.+++
T Consensus 160 ~~~~~~-------------------------------------------------------------------------- 165 (326)
T COG0306 160 LIVGKD-------------------------------------------------------------------------- 165 (326)
T ss_pred HHhccc--------------------------------------------------------------------------
Confidence 653200
Q ss_pred ccccccccccccccCCCCCcchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCCCCCCCCchHHHHH
Q 012049 384 TNIHNKSIGIFSDIAGPKGTQLEIVYGVFGYMQVLSACFMSFAHGGNDVSNAIGPLAAALSILHGGASGTKIVIPIDVLA 463 (472)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~F~~lQv~sA~~~SFaHGaNDVaNAiGPlaai~~i~~~g~~~~~~~iP~WIL~ 463 (472)
..+++|+.||++|++|||++||+||+||+||++||+++++. ....|.|++.
T Consensus 166 --------------------~~~~~~~~~r~l~i~sa~~~aF~hGaNdvanaiGpi~~~~~---------~~~~~~~v~~ 216 (326)
T COG0306 166 --------------------GKRKVERIFRILLIISASLVAFAHGANDVANAIGPLVAVLI---------SSLPPFWVLV 216 (326)
T ss_pred --------------------cchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHh---------hccccHHHHH
Confidence 00346789999999999999999999999999999999874 1456999999
Q ss_pred Hhhhheec
Q 012049 464 WGGFGIVG 471 (472)
Q Consensus 464 ~Gg~GIv~ 471 (472)
+||+||++
T Consensus 217 ~g~~~i~l 224 (326)
T COG0306 217 LGGIALAL 224 (326)
T ss_pred HHHHHHHH
Confidence 99999875
No 4
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-38 Score=323.99 Aligned_cols=196 Identities=26% Similarity=0.350 Sum_probs=174.0
Q ss_pred ccCCChhhhHHHHhcchhHHHHHHHHHHHHHHHHH-HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHh
Q 012049 94 AGDDDLPGMAQAFHISSSTASAISICIALAALTLP-FFMKSLGQGLDIKTKLLSHATLLFGFYMAWNIGANDVANAMGTS 172 (472)
Q Consensus 94 ~~~~~~~ki~~~~~~Sp~~~~~ig~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~l~ii~a~~~Af~~GaNDvaNa~G~~ 172 (472)
++|+.+.||+.+|++||++|+. ++|+++.+. +..++ .++..+.+++|+++|+++||++||+||+||+||++||+
T Consensus 127 ~~~~~~~~Iv~swvlsPii~~~----ia~~l~~~~~~~~~~-~~~~~~~~~~~r~l~i~sa~~~aF~hGaNdvanaiGpi 201 (326)
T COG0306 127 VDWGVLGKIVASWVLSPILGGV----LAYLLYSLLRRLIVG-KDGKRKVERIFRILLIISASLVAFAHGANDVANAIGPL 201 (326)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHhH
Confidence 7899999999999999998855 445544332 22221 13667889999999999999999999999999999999
Q ss_pred hhcC--cccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 012049 173 VGSG--ALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVST 250 (472)
Q Consensus 173 Vgs~--~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~~~~~~aAl~aaai~lliat~lGlPVST 250 (472)
++.. ...|.|++++|++++.+|++++|+||++|+|+||++++|.++ +||++++++.+.+|+.+|+|+||
T Consensus 202 ~~~~~~~~~~~~v~~~g~~~i~lG~~~~g~Rvi~TvG~kIt~L~p~~g---------fsA~~~sa~~v~~as~~GlPvSt 272 (326)
T COG0306 202 VAVLISSLPPFWVLVLGGIALALGTLTGGPRVIETVGKKITELTPSRG---------FSAQLSSAITVLLASLLGLPVST 272 (326)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHccHHHHHHHhhhhcccCcchh---------HHHHHHHHHHHHHHHHcCCCccc
Confidence 9887 488999999999999999999999999999999999987765 89999999999999999999999
Q ss_pred chhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 012049 251 THCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRF 304 (472)
Q Consensus 251 THaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~~~ 304 (472)
||+++|+++|+|++.+ .+.+||+.+++|+.+|++|||+++++++++|++++..
T Consensus 273 T~~~vgaI~GvG~~~~-~~~v~~~~~~~Iv~aWvvT~p~a~~ls~~~~~~~~~~ 325 (326)
T COG0306 273 THTLVGAVLGVGLALA-GGAVNWKVIKNIVLAWVVTLPAAALLSALLYWLLLFI 325 (326)
T ss_pred ceeeeeeeeecchhhc-cCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998853 4689999999999999999999999999999998753
No 5
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=100.00 E-value=1.1e-35 Score=303.18 Aligned_cols=190 Identities=26% Similarity=0.330 Sum_probs=163.4
Q ss_pred ccccCC-ChhhhHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhc------CCc-------hhhhHHHHHHHHHHHHHHH
Q 012049 92 TEAGDD-DLPGMAQAFHISSSTASAISICIALAALTLPFFMKSLG------QGL-------DIKTKLLSHATLLFGFYMA 157 (472)
Q Consensus 92 ~~~~~~-~~~ki~~~~~~Sp~~~~~ig~~~g~l~~~~~~~~~~~~------~~~-------~~~~~~~~~l~ii~a~~~A 157 (472)
+.+||+ .+.||+.+|++||++++.++.++.+++. ++.++.+ ... ++.++.|+.+|++++++++
T Consensus 111 ~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~sa~~~s 187 (326)
T PF01384_consen 111 SAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIR---RIFLRRKNPVKRALRPLPILFFDPRVEKIFRFLQILSAAFVS 187 (326)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 468999 5999999999999998666655544432 2222110 011 2588999999999999999
Q ss_pred HHhhhhhhhhHHHHhhhc------C------cccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHHHH
Q 012049 158 WNIGANDVANAMGTSVGS------G------ALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFA 225 (472)
Q Consensus 158 f~~GaNDvaNa~G~~Vgs------~------~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~~~ 225 (472)
|+||+||+||++|+++.. + ...|.|+++++++++.+|++++|+|+++|+|++|++++|.++
T Consensus 188 fahGaND~~naig~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~i~~G~~~~G~rv~~tvG~~it~l~p~~g------- 260 (326)
T PF01384_consen 188 FAHGANDVANAIGPLAAILIIYNTGSVNSGKAEIPWWILLLGGLAIALGTLTGGWRVIRTVGEKITKLDPSRG------- 260 (326)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCcccccccChHHHHHHHHHHHHHHHHHhhHHHHHHhccchhccCcchh-------
Confidence 999999999999999542 1 245899999999999999999999999999999999987775
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHH
Q 012049 226 GLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVS 294 (472)
Q Consensus 226 ~~~aAl~aaai~lliat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila 294 (472)
+++++++++.++++|.+|+||||||+++|+++|+|++ +|.+.|||+.+++|+.+|++|||+++++|
T Consensus 261 --~~a~l~sa~~v~~as~~GlPvStT~~~vgaivGvG~~-~~~~~V~w~~~~~I~~~Wi~T~p~a~~~S 326 (326)
T PF01384_consen 261 --FSAQLSSALTVLIASLLGLPVSTTHAIVGAIVGVGLA-RGFRSVNWKTVRKIVLGWILTLPIAALLS 326 (326)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcchhheeeeeeEeeeee-cCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999 57899999999999999999999999874
No 6
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-32 Score=283.40 Aligned_cols=160 Identities=28% Similarity=0.381 Sum_probs=149.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhh-----------cCcccHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012049 137 GLDIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSVG-----------SGALTLRQAVLTAAVLEFSGALLMGTHVTST 205 (472)
Q Consensus 137 ~~~~~~~~~~~l~ii~a~~~Af~~GaNDvaNa~G~~Vg-----------s~~l~~~~aillaai~~~lGa~l~G~rVi~T 205 (472)
+.+++.+.|..+|+++||+++|+||+||++|++||++. .+.-+|.|.++.+++++.+|.+++|+||++|
T Consensus 340 d~e~v~~lFs~lQvlTACF~sFAHGaNDVsNAIgPL~Al~~iy~~g~v~~k~~~Pi~vLlyG~~aicvGlw~~G~rVIkT 419 (512)
T KOG2493|consen 340 DSEEVSRLFSTLQVLTACFASFAHGANDVSNAIGPLVALYLIYRTGYVEQKEETPIYVLLYGGFAICVGLWTLGHRVIKT 419 (512)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHHHHHcCCccceeccceeeeecccceeeeeehhhhHHHHHH
Confidence 55688999999999999999999999999999999953 3456799999999999999999999999999
Q ss_pred hhcCceeccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhh
Q 012049 206 MQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVI 285 (472)
Q Consensus 206 vg~~Iv~l~~~~~~p~~~~~~~~aAl~aaai~lliat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWil 285 (472)
+|+++++++|-+| ||.++++++++++|+.+|+|+||||+.||+++++|++ |+.+.|+|+.+++|..+|++
T Consensus 420 vG~kmt~itPasG---------FsIEfgaA~TvLiAsklGlPiStThc~VGsVvaVG~~-rs~~~V~w~~fR~I~~sW~v 489 (512)
T KOG2493|consen 420 VGKKMTEITPASG---------FSIEFGAAITVLIASKLGLPISTTHCLVGSVVAVGLA-RSLKGVDWRTFRNIFFSWFV 489 (512)
T ss_pred HhhcccccCCCcc---------ceeeHHHHHHHHHHHhcCCCcccceeeeeeEEEEEEe-ccCCCcchHHHHHhHhhhee
Confidence 9999999977665 8999999999999999999999999999999999999 56789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 012049 286 SPILGALVSFLVYKCIRRFVY 306 (472)
Q Consensus 286 TP~ia~ila~~l~~ll~~~il 306 (472)
|.|++++++.+.++++++.++
T Consensus 490 TlPvsglisa~~m~Il~~~vl 510 (512)
T KOG2493|consen 490 TLPVSGLISAGIMWILQYAVL 510 (512)
T ss_pred ecchHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 7
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=83.12 E-value=24 Score=39.57 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=85.8
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHH--HHHHHhc---CCchhhhHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHhh-hcC
Q 012049 105 AFHISSSTASAISICIALAALTLP--FFMKSLG---QGLDIKTKLLSHATLLFGFYMAWNIGA--NDVANAMGTSV-GSG 176 (472)
Q Consensus 105 ~~~~Sp~~~~~ig~~~g~l~~~~~--~~~~~~~---~~~~~~~~~~~~l~ii~a~~~Af~~Ga--NDvaNa~G~~V-gs~ 176 (472)
++++-|+++.++...+.+.+.--+ |+...+. ......+ -..+..+.+++++|.+|. |-++..+++.. .++
T Consensus 348 piliiPllt~li~~~l~~~viGpp~~~l~~~l~~~l~~l~~~~--~~l~G~ilGam~~fdmggpvnkaa~~~~~~~la~~ 425 (563)
T PRK10712 348 PILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTAN--AVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQ 425 (563)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhc
Confidence 456788877666555544322111 3222111 1112122 235667778888888775 77777777763 333
Q ss_pred cccHHHHHHHHH----HHHHHHHhhhhHH---HHHHhhc--------Cceeccc-cC-CchhHHHHHHHHHHHHHHHHHH
Q 012049 177 ALTLRQAVLTAA----VLEFSGALLMGTH---VTSTMQK--------GILVTSV-FQ-GKDTLLFAGLLSSLAAAGTWLQ 239 (472)
Q Consensus 177 ~l~~~~aillaa----i~~~lGa~l~G~r---Vi~Tvg~--------~Iv~l~~-~~-~~p~~~~~~~~aAl~aaai~ll 239 (472)
...|..+...++ +++++++++.=.| --|..++ +|+++-. |. .+|.+. +.+..+++++--.
T Consensus 426 g~~p~~a~~~a~~vpp~G~alA~~l~k~kf~k~er~~~~sa~i~gl~GITEpAIPf~~~~p~r~---i~a~~iGgavgGa 502 (563)
T PRK10712 426 TYAPMAAIMAAGMVPPLAMGLATMVARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRV---LPCCIVGGALTGA 502 (563)
T ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcchhHHHHhCchhH---HHHHHHHHHHHHH
Confidence 344444433333 4444444441011 0111111 3443322 11 123222 1344455555555
Q ss_pred HHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012049 240 VASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRR 303 (472)
Q Consensus 240 iat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~~ 303 (472)
++-.+|.=. ++--|++....+. .+.+-.+.|+++..++.+++++++.++|+
T Consensus 503 i~~~~gv~~---~ap~gg~~v~~~~----------~~i~~~~~~iiai~ig~vvt~~~~~~~k~ 553 (563)
T PRK10712 503 ISMAIGAKL---MAPHGGLFVLLIP----------GAITPVLGYLVAIIAGTLVAGLAYAFLKR 553 (563)
T ss_pred HHHHhcCcc---ccccchhHHhhHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 555555422 2222333332221 01111467888999999999999887775
No 8
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=72.53 E-value=90 Score=33.25 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=42.8
Q ss_pred hHHHHhcchhHHHHHHHHHHH-HHHHHH-HHHHHhc---CCchhhhHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHhh-
Q 012049 102 MAQAFHISSSTASAISICIAL-AALTLP-FFMKSLG---QGLDIKTKLLSHATLLFGFYMAWNIG--ANDVANAMGTSV- 173 (472)
Q Consensus 102 i~~~~~~Sp~~~~~ig~~~g~-l~~~~~-~~~~~~~---~~~~~~~~~~~~l~ii~a~~~Af~~G--aNDvaNa~G~~V- 173 (472)
=+.++++-|+++.++...+.+ ++-... ++...+. .+....+ -..+..+.++.++|..| -|-+|-.+++..
T Consensus 131 ~~~piliiP~l~~li~g~lm~~vig~pi~~l~~~l~~~L~~l~~~~--~~~lG~ilG~m~afDmGGPvNK~A~~f~~~~~ 208 (359)
T PRK10478 131 SVMPIFIIPIVGTLITAGIMMWGLGEPIGALTNSLTQWLQGMQQGS--IVMLAVIMGLMLAFDMGGPVNKVAYAFMLICV 208 (359)
T ss_pred hhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 344567778877655443433 221111 2211110 1222222 34578889999999999 599999999874
Q ss_pred hcCcccH
Q 012049 174 GSGALTL 180 (472)
Q Consensus 174 gs~~l~~ 180 (472)
.++...|
T Consensus 209 ~~g~~~~ 215 (359)
T PRK10478 209 AQGVYTV 215 (359)
T ss_pred hcCCchH
Confidence 3443334
No 9
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=65.70 E-value=78 Score=35.98 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=22.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhcC
Q 012049 281 SSWVISPILGALVSFLVYKCIRRFVYSA 308 (472)
Q Consensus 281 ~sWilTP~ia~ila~~l~~ll~~~il~~ 308 (472)
+.|+++.+++.+++.+++.++|+...++
T Consensus 601 ~~~~~~~~~g~~v~a~~~~~~k~~~~~~ 628 (631)
T PRK09765 601 IGWFGAALVGAAISTAILLIWRRHAVKH 628 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 3699999999999999998887665443
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=64.11 E-value=38 Score=32.63 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012049 344 ALAQALAFGAAGAFLVYRIIHKQ 366 (472)
Q Consensus 344 ~~~i~l~~g~~~~~~~~~~lrr~ 366 (472)
..++.+++|+ +++.+++++|||
T Consensus 179 ~~~~~iiig~-i~~~~~~~lkkk 200 (206)
T PF06570_consen 179 PPWVYIIIGV-IAFALRFYLKKK 200 (206)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455555553 334455777777
No 11
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=58.72 E-value=38 Score=35.57 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=37.1
Q ss_pred cccccchhhhhhccCccccccccccccccCCCCcCcccccC-------------------CChhhhHHHHhcchhHHHHH
Q 012049 56 HSFASISSFAEAEGEGEEEQNEGLQVQKHHHDEPTKTEAGD-------------------DDLPGMAQAFHISSSTASAI 116 (472)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ki~~~~~~Sp~~~~~i 116 (472)
-|-.++|.++|.+++|+.+.-..-|+.++-+|+. .+++ +...-|+-+|+++|+.|=++
T Consensus 77 ~~e~v~s~~~~~~e~~~~~~v~~eEL~~~~~~~s---~~~~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~ 153 (325)
T TIGR00341 77 KPEFVISPASRREEAEEKTSLPVEELYEMAKSYA---SLNKGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIH 153 (325)
T ss_pred ccceecChhhhhhhccccCCcCHHHHHHHHHhhC---cCcHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHH
Confidence 6778888777654443333222233334443333 2333 23345777899999988777
Q ss_pred HHHHHHH
Q 012049 117 SICIALA 123 (472)
Q Consensus 117 g~~~g~l 123 (472)
|+.+|..
T Consensus 154 a~a~g~~ 160 (325)
T TIGR00341 154 GFAVNLS 160 (325)
T ss_pred HHHHHHH
Confidence 7766644
No 12
>PF14342 DUF4396: Domain of unknown function (DUF4396)
Probab=51.78 E-value=2e+02 Score=26.55 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=35.3
Q ss_pred cccchhhhhhHHHHHHhhcCCCc--cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCChhhhhhh
Q 012049 248 VSTTHCIVGSMVGFGLVYGGAGA--VFWSSLARVTSSWVISPILGALVSFLVYKCIRRFVYSAPNPGQAAAA 317 (472)
Q Consensus 248 VSTTHaivGaIiGvGla~~G~~~--V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~~~il~~~~~~~~a~~ 317 (472)
+||+||..|.-+|==.+.-=... ..| .+...|++....+.++++.+....-+ -++..+++++++
T Consensus 8 ~~T~hC~aGC~lGdi~~~~~~~~~~~g~----~~~~~~~l~~~la~~~gi~~~~~~l~--~~~~~~~~~al~ 73 (139)
T PF14342_consen 8 VATLHCLAGCTLGDIIGMWIVQATLLGW----SMWAIMILAYALAFLFGIAFQYFPLM--PMRGLSYGRALK 73 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc----cHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCHHHHHH
Confidence 57889988887764433100011 122 34456677777777777766655332 234456666655
No 13
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=46.98 E-value=2e+02 Score=27.07 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=25.7
Q ss_pred cchhhhhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcC
Q 012049 250 TTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRFVYSA 308 (472)
Q Consensus 250 TTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~~~il~~ 308 (472)
|-.+.-||+.|+=++. +-.+..+++..+|+-=++-.++++.++-+.+-..+..+
T Consensus 65 t~lAfPGsm~GA~laG-----llyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~ 118 (150)
T PF09512_consen 65 TLLAFPGSMFGALLAG-----LLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGK 118 (150)
T ss_pred CHHHhccchHHHHHHH-----HHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 3344555555554431 11122344455555555566666665555554554443
No 14
>PRK10692 hypothetical protein; Provisional
Probab=39.16 E-value=87 Score=26.97 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHHH-HHHHHHHHHHHHHHH
Q 012049 180 LRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLF-AGLLSSLAAAGTWLQ 239 (472)
Q Consensus 180 ~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~~-~~~~aAl~aaai~ll 239 (472)
-+.+.+++-++|.+|-+++-..|.-++-..+.+++. |.... .++++..++|.+|+.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~L----p~~~~~gal~~IFiGAllWL~ 59 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNL----PQFFAHGALLSIFVGALLWLA 59 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCc----hHHHHhhHHHHHHHHHHHHHh
Confidence 356778889999999988878888888888887754 33221 335666677777764
No 15
>PF13303 PTS_EIIC_2: Phosphotransferase system, EIIC
Probab=38.42 E-value=5e+02 Score=27.37 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhhHHH-------HHHhhcCceeccccCCchhHHHHHHHHHHHHHHHHHHHHHhcC---Cccccchhhh
Q 012049 186 TAAVLEFSGALLMGTHV-------TSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYG---WPVSTTHCIV 255 (472)
Q Consensus 186 laai~~~lGa~l~G~rV-------i~Tvg~~Iv~l~~~~~~p~~~~~~~~aAl~aaai~lliat~lG---lPVSTTHaiv 255 (472)
++..+-+.|-...++|+ ..-+|+-.+..+.+-.||... +-..+++++.-.+++.++ -|.|+
T Consensus 199 iG~~a~~~g~av~s~k~N~~G~~iA~~lGtpk~qmpNi~knP~i~----iP~~i~aaI~G~ia~~~~i~~t~~~a----- 269 (327)
T PF13303_consen 199 IGCCAQMFGFAVMSYKVNKIGGTIAQGLGTPKMQMPNIIKNPIIW----IPPIIAAAILGPIATLFNIQGTPASA----- 269 (327)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCchhhhhcchHhhhhHHHhCcHHH----HHHHHHHHHHHHHHHHhhcccChhhc-----
Confidence 33344445666666664 333433334443344467644 333445555555555553 33333
Q ss_pred hhHHHHHHhh-cC----CCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHhcC
Q 012049 256 GSMVGFGLVY-GG----AGAVFWSSLARVTSSWVISPILGALVSFLVYKCI-RRFVYSA 308 (472)
Q Consensus 256 GaIiGvGla~-~G----~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll-~~~il~~ 308 (472)
|+|... -| ...-.+..+..+++.|++-|.+ +++++++++ |+.-+.+
T Consensus 270 ----G~G~~GLVgpi~~~~~~~~~~~~~~~l~~~ilP~v---~~~~~~~~f~k~~~~ik 321 (327)
T PF13303_consen 270 ----GFGTSGLVGPIAALSGWGASNLLIILLVFFILPAV---IAFIIYKIFIKKLKLIK 321 (327)
T ss_pred ----cCCchHHHHHHHHhccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCC
Confidence 333320 00 0122455688888899988865 466677766 5543333
No 16
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=36.47 E-value=1.1e+02 Score=26.24 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHH-HHHHHHHHHHHHHHHH
Q 012049 180 LRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLL-FAGLLSSLAAAGTWLQ 239 (472)
Q Consensus 180 ~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~-~~~~~aAl~aaai~ll 239 (472)
-+.+.+++-++|.+|-++.-..|.-++-+.+.+++. |... -.++++..++|.+|+.
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~L----p~~~~~gal~~IFiGAllWL~ 59 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGL----PQFLAHGALFSIFIGALLWLV 59 (89)
T ss_pred chhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCC----cHHHHhhHHHHHHHHHHHHHh
Confidence 356778888999999888877788888888887754 3221 1345666777777764
No 17
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=34.48 E-value=6.7e+02 Score=27.74 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhcCC
Q 012049 281 SSWVISPILGALVSFLVYKCIRRFVYSAP 309 (472)
Q Consensus 281 ~sWilTP~ia~ila~~l~~ll~~~il~~~ 309 (472)
+.|+++..++.+++++++.++|+...+++
T Consensus 442 ~~~~~~~~vG~~v~a~~~~~~k~~~~~~~ 470 (482)
T PRK11404 442 GSFYLVLAIGLALNISFIIVLKGLWLRRK 470 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 57899999999999999999998876554
No 18
>COG1288 Predicted membrane protein [Function unknown]
Probab=32.98 E-value=74 Score=34.91 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=53.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhcCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCC
Q 012049 139 DIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQG 218 (472)
Q Consensus 139 ~~~~~~~~~l~ii~a~~~Af~~GaNDvaNa~G~~Vgs~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~ 218 (472)
++....|..+.++.++.- ..|.||.++++-. |+-...-+-++.+++=.+=.++-.+.+.+|+=+...+. .++
T Consensus 301 ~eiA~~Fl~mgIiig~I~--glse~~~~~sF~~----Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~--lsg 372 (481)
T COG1288 301 PEIAAQFLAMGIIIGLIG--GLSENDIASSFIE----GASDLLGVALIIGLARGINLIMDDGMILDTILNYLASL--LSG 372 (481)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchhHHHHHHHH----hHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHH--Hhc
Confidence 445566777777776665 7889999988754 33233333344444433334445566666654432221 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcC--Cccccchhhhh
Q 012049 219 KDTLLFAGLLSSLAAAGTWLQVASYYG--WPVSTTHCIVG 256 (472)
Q Consensus 219 ~p~~~~~~~~aAl~aaai~lliat~lG--lPVSTTHaivG 256 (472)
+...+.+.....+...++ +|.||-|+...
T Consensus 373 ---------ls~~~f~i~mli~~~~l~f~VpS~SG~A~lt 403 (481)
T COG1288 373 ---------LSSAVFAIGMLIFQALLNFFVPSGSGLAVLT 403 (481)
T ss_pred ---------CCHHHHHHHHHHHHHHheEEEeCCCchhHhh
Confidence 112222223333444455 78888887543
No 19
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=31.36 E-value=5.8e+02 Score=27.82 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=31.7
Q ss_pred HHHHHHHHHH--HHHHhhhhhhhhHHHHhhhcCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCcee
Q 012049 146 SHATLLFGFY--MAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILV 212 (472)
Q Consensus 146 ~~l~ii~a~~--~Af~~GaNDvaNa~G~~Vgs~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~ 212 (472)
+++..+.+++ ..|..|.---+|+++-.+....-.|.|...+.-.....=..++|-|.+..+...++.
T Consensus 129 k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP 197 (425)
T TIGR00835 129 RWLAVLFAVFLIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALIIFGGLKRIAKISSVVVP 197 (425)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 3444444433 233455434557776665422223455433222222222355677766666665553
No 20
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=29.60 E-value=6.2e+02 Score=27.43 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHhcCCccccchhhhhhHHHHHHhhcCCCccchhhHHHHHHHH
Q 012049 239 QVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSW 283 (472)
Q Consensus 239 liat~lGlPVSTTHaivGaIiGvGla~~G~~~V~W~~~~~Iv~sW 283 (472)
.+...+|+|...+-.+.+.++-+=...+|.++|-|..+.+.+...
T Consensus 147 ~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~ 191 (487)
T TIGR02121 147 LFESTFGLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMF 191 (487)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455678998776666555555555556788999997666654443
No 21
>PRK01844 hypothetical protein; Provisional
Probab=28.64 E-value=1.1e+02 Score=25.46 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=25.3
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q 012049 106 FHISSSTASAISICIALAALTLPFFMKSLGQGLDIKTKLLSH 147 (472)
Q Consensus 106 ~~~Sp~~~~~ig~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (472)
|++-+++++++|+++||.+... ++-+.+.++|+-.++-++.
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark-~~~k~lk~NPpine~mir~ 46 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARK-YMMNYLQKNPPINEQMLKM 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 3445667777788888766433 4445555677666666654
No 22
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.26 E-value=1e+03 Score=29.41 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=18.4
Q ss_pred HHHHHhcCCccccchhhhhhHHHHHHh
Q 012049 238 LQVASYYGWPVSTTHCIVGSMVGFGLV 264 (472)
Q Consensus 238 lliat~lGlPVSTTHaivGaIiGvGla 264 (472)
+.....+|++.|+-.+++|++ |+|+.
T Consensus 889 l~~L~~lGI~~t~l~al~gal-GVgIG 914 (1109)
T PRK10929 889 LVGFSMIGIEWSKLQWLVAAL-GVGLG 914 (1109)
T ss_pred HHHHHHcCCChHHHHHHHHHH-HHHHH
Confidence 455677899999888877764 55543
No 23
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=24.16 E-value=6.3e+02 Score=27.26 Aligned_cols=113 Identities=12% Similarity=-0.045 Sum_probs=62.2
Q ss_pred cCcccHHHHHHHHHHHHHHHHhhhhHHHHHHhhcCceeccccCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccccchhh
Q 012049 175 SGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCI 254 (472)
Q Consensus 175 s~~l~~~~aillaai~~~lGa~l~G~rVi~Tvg~~Iv~l~~~~~~p~~~~~~~~aAl~aaai~lliat~lGlPVSTTHai 254 (472)
++..+|..+++++.++-.+- ..+.+..+. ..+|=|. ...-|..++ +...++...-++++.-..+..
T Consensus 274 a~~v~p~~A~viG~iag~~~--~~~~~~l~~-~~~iDD~--~~~~~vHg~----~Gi~G~i~~glfa~~~~~~~~----- 339 (403)
T TIGR00836 274 CGVVTPWGAIIIGLVAGVLC--YLAVSKLKK-KLKIDDP--LDAFAVHGV----GGIWGLIATGLFAAPKVGGVG----- 339 (403)
T ss_pred CCCCCHHHHHHHHHHHHHHH--HHHHHHHHH-HcCCCCC--cccchhhhh----hHHHHHHHHHHhccccccccc-----
Confidence 45678888888877764432 234442221 1233222 222344553 333444444444432211110
Q ss_pred hhhHHHHHHhhcCCCccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCCh
Q 012049 255 VGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRFVYSAPNP 311 (472)
Q Consensus 255 vGaIiGvGla~~G~~~V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~~~il~~~~~ 311 (472)
+ | +...-+|..+..=+..++++...+++.+++++++++++..-|-++
T Consensus 340 -~-----g----~~~~~~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~~~~lRv~~ 386 (403)
T TIGR00836 340 -T-----G----GLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSE 386 (403)
T ss_pred -C-----C----ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCH
Confidence 0 1 111124667776777899999999999999999999876544333
No 24
>PLN02953 phosphatidate cytidylyltransferase
Probab=22.25 E-value=70 Score=34.52 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=7.4
Q ss_pred hhhHHHHhcchhH
Q 012049 100 PGMAQAFHISSST 112 (472)
Q Consensus 100 ~ki~~~~~~Sp~~ 112 (472)
..++.++++-|..
T Consensus 100 ~RIiSglvl~~l~ 112 (403)
T PLN02953 100 KRVIFGIGIGLPV 112 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655543
No 25
>PF15461 BCD: Beta-carotene 15,15'-dioxygenase
Probab=22.08 E-value=8.1e+02 Score=24.58 Aligned_cols=68 Identities=13% Similarity=0.274 Sum_probs=37.1
Q ss_pred CccchhhHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHh-----cCCChhhhhhh-hhHHHHHHHHH--Hhhheecc
Q 012049 269 GAVFWSSLARV----TSSWVISPILGALVSFLVYKCIRRFVY-----SAPNPGQAAAA-AAPIAVFVGVT--GISFAAFP 336 (472)
Q Consensus 269 ~~V~W~~~~~I----v~sWilTP~ia~ila~~l~~ll~~~il-----~~~~~~~~a~~-~~P~~~~~t~~--i~~~~i~~ 336 (472)
+.-+|....+. +..+.+.|+.++.+-+.+..-.|.+.. ++++..++..+ ..|+ ...+.. ...++.++
T Consensus 147 ~~~~~~~~~el~~L~~~f~~lppl~af~lYFc~wHS~rh~~~~~~~l~~~~~~~~~~~~a~~~-~~~a~~~~~~l~~~~~ 225 (259)
T PF15461_consen 147 RRRRWRLAAELALLLALFALLPPLVAFALYFCLWHSLRHILRIIRFLDGQSSRRRFLRSAAPL-TLAAILGLAGLYFLLP 225 (259)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 34556544443 455688888888888888777766543 22233333333 3444 444443 33455555
Q ss_pred C
Q 012049 337 L 337 (472)
Q Consensus 337 ~ 337 (472)
.
T Consensus 226 ~ 226 (259)
T PF15461_consen 226 N 226 (259)
T ss_pred C
Confidence 4
No 26
>PF14150 YesK: YesK-like protein
Probab=21.78 E-value=4.4e+02 Score=22.36 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=17.2
Q ss_pred HhcCCChhhhhhhhhH-HHHHHHHHHhhhe
Q 012049 305 VYSAPNPGQAAAAAAP-IAVFVGVTGISFA 333 (472)
Q Consensus 305 il~~~~~~~~a~~~~P-~~~~~t~~i~~~~ 333 (472)
++|++.|.|...+..| ++..+++....+.
T Consensus 18 ~lr~r~p~k~~~~il~~ililis~~~v~~S 47 (81)
T PF14150_consen 18 LLRKRFPKKQPEIILPLILILISLLTVLIS 47 (81)
T ss_pred HHHHhCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888 4445555444443
No 27
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=4.4e+02 Score=26.03 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012049 349 LAFGAAGAFLVYRIIHKQ 366 (472)
Q Consensus 349 l~~g~~~~~~~~~~lrr~ 366 (472)
+.++..+.+-++.|++||
T Consensus 198 l~IiGav~lalRfylkkk 215 (226)
T COG4858 198 LTIIGAVILALRFYLKKK 215 (226)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444445566677776
No 28
>PRK11281 hypothetical protein; Provisional
Probab=21.48 E-value=9.1e+02 Score=29.79 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCccccchhhhhhHHHHHHh
Q 012049 236 TWLQVASYYGWPVSTTHCIVGSMVGFGLV 264 (472)
Q Consensus 236 i~lliat~lGlPVSTTHaivGaIiGvGla 264 (472)
..+.+...+|+++|.-..++|+ +|+|+.
T Consensus 890 ~iliaL~~lGi~~t~L~~l~ga-LgVgIG 917 (1113)
T PRK11281 890 GAVTAFSTLGVSWDKLQWLVAA-LSVGLG 917 (1113)
T ss_pred HHHHHHHHcCCChHHHHHHHHH-HHHHHH
Confidence 3344557789998887776655 566653
No 29
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=20.35 E-value=7e+02 Score=23.22 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcCCccccchhhhhhHH
Q 012049 228 LSSLAAAGTWLQVASYYGWPVSTTHCIVGSMV 259 (472)
Q Consensus 228 ~aAl~aaai~lliat~lGlPVSTTHaivGaIi 259 (472)
+++.+++.+ ..+...+|.|.+...+++|+++
T Consensus 158 ~aa~~~~~~-a~~~~~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 158 IAAFLASLL-AALLARLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHH-HHHHHHhCCCcCHHHHHHHHHh
Confidence 455554444 3344578999999999999886
Done!