Query 012049
Match_columns 472
No_of_seqs 330 out of 2230
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 20:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012049.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012049hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 6.0 2.5E+02 0.018 17.7 3.2 22 280-301 9-30 (38)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 5.9 4.7E+02 0.034 19.0 5.7 23 281-303 32-54 (100)
3 d1mkma1 a.4.5.33 (A:1-75) Tran 5.3 82 0.006 22.3 0.6 30 238-267 24-53 (75)
4 d1rh5b_ f.23.28.1 (B:) Preprot 4.6 5.2E+02 0.038 17.6 4.8 32 271-302 18-49 (56)
5 d2nysa1 b.136.1.2 (A:3-119) Un 4.1 80 0.0059 25.2 -0.3 21 50-70 89-109 (117)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.6 6.5E+02 0.048 18.4 5.0 23 280-302 37-59 (107)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 3.6 6.5E+02 0.048 17.2 7.4 26 238-264 57-82 (86)
8 d2outa1 a.140.3.2 (A:94-131) U 3.6 1.2E+02 0.0089 18.9 0.3 13 61-73 25-37 (38)
9 d2gx9a1 d.299.1.1 (A:79-205) N 3.2 2.1E+02 0.015 22.4 1.4 23 426-449 90-112 (127)
10 d2axth1 f.23.33.1 (H:2-65) Pho 3.0 2.4E+02 0.018 19.8 1.5 27 98-124 16-42 (64)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=5.96 E-value=2.5e+02 Score=17.73 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=16.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 012049 280 TSSWVISPILGALVSFLVYKCI 301 (472)
Q Consensus 280 v~sWilTP~ia~ila~~l~~ll 301 (472)
.+.|++-|+++-++-.+++.++
T Consensus 9 yLPwI~iPvv~wl~p~vvMglL 30 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVVMGLL 30 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHH
Confidence 4689999999877776666554
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.86 E-value=4.7e+02 Score=18.96 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=11.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Q 012049 281 SSWVISPILGALVSFLVYKCIRR 303 (472)
Q Consensus 281 ~sWilTP~ia~ila~~l~~ll~~ 303 (472)
..|+...+...+.+.++|.+.|+
T Consensus 32 v~~i~~~I~~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455555555555555555543
No 3
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.27 E-value=82 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=26.3
Q ss_pred HHHHHhcCCccccchhhhhhHHHHHHhhcC
Q 012049 238 LQVASYYGWPVSTTHCIVGSMVGFGLVYGG 267 (472)
Q Consensus 238 lliat~lGlPVSTTHaivGaIiGvGla~~G 267 (472)
--+|..+|+|-||+|=++-.+.-.|...+.
T Consensus 24 ~eia~~~~~~~st~~rll~tL~~~g~l~~~ 53 (75)
T d1mkma1 24 SEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 53 (75)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEC
Confidence 347789999999999999999999998653
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.59 E-value=5.2e+02 Score=17.56 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=24.2
Q ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 012049 271 VFWSSLARVTSSWVISPILGALVSFLVYKCIR 302 (472)
Q Consensus 271 V~W~~~~~Iv~sWilTP~ia~ila~~l~~ll~ 302 (472)
=+|+.+.++...=-+-..+=+.++|+++.+..
T Consensus 18 P~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887777777777888887776543
No 5
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.14 E-value=80 Score=25.18 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.5
Q ss_pred cccccccccccchhhhhhccC
Q 012049 50 KNSRLTHSFASISSFAEAEGE 70 (472)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~ 70 (472)
+..+|+-||.|+.+|+|..-+
T Consensus 89 ~~e~L~IPf~aI~~F~DPsv~ 109 (117)
T d2nysa1 89 TPEKLVIPYNAIRGFYDPSVN 109 (117)
T ss_dssp EEEEEEEEGGGEEEEEEGGGT
T ss_pred eeEEEEeehHHhheecCCCCC
Confidence 344599999999999987543
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.63 E-value=6.5e+02 Score=18.42 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=12.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 012049 280 TSSWVISPILGALVSFLVYKCIR 302 (472)
Q Consensus 280 v~sWilTP~ia~ila~~l~~ll~ 302 (472)
...|+.+.+...+.+..+|...|
T Consensus 37 ~v~~i~~~I~~~V~~~~~~~~~~ 59 (107)
T d3ehbb2 37 FVLYIITAVTIFVCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555555554
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=6.5e+02 Score=17.23 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=16.8
Q ss_pred HHHHHhcCCccccchhhhhhHHHHHHh
Q 012049 238 LQVASYYGWPVSTTHCIVGSMVGFGLV 264 (472)
Q Consensus 238 lliat~lGlPVSTTHaivGaIiGvGla 264 (472)
+...+.+|+|+++=-+ ..++.|+++.
T Consensus 57 ~~~L~~~Gi~~t~l~a-~~G~~gvaiG 82 (86)
T d2vv5a3 57 IAALGRVGVQTASVIA-VLGAAGLVVG 82 (86)
T ss_dssp HHHHHTTTCCSTTHHH-HHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHH-HHHHHHHHHH
Confidence 4455789999886444 5555666653
No 8
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=3.56 E-value=1.2e+02 Score=18.86 Aligned_cols=13 Identities=54% Similarity=0.767 Sum_probs=9.6
Q ss_pred chhhhhhccCccc
Q 012049 61 ISSFAEAEGEGEE 73 (472)
Q Consensus 61 ~~~~~~~~~~~~~ 73 (472)
+.-||.+|||+.+
T Consensus 25 ialfapadgekse 37 (38)
T d2outa1 25 IALFAPADGEKSE 37 (38)
T ss_dssp HHHCCSCCSSCCC
T ss_pred HHhccccCccccc
Confidence 4558889998754
No 9
>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal domain {Influenza A virus [TaxId: 11320]}
Probab=3.15 E-value=2.1e+02 Score=22.38 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=17.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhcC
Q 012049 426 AHGGNDVSNAIGPLAAALSILHGG 449 (472)
Q Consensus 426 aHGaNDVaNAiGPlaai~~i~~~g 449 (472)
.|-.-||-||+|.+..-+ -|+.+
T Consensus 90 Ght~EDvknaigvliggl-ewndn 112 (127)
T d2gx9a1 90 GHTAEDVKNAVGVLIGGL-EWNDN 112 (127)
T ss_dssp CCCHHHHHHHHHHHHHHH-HTTTC
T ss_pred CCchHHHHHHHHHhccce-eecCc
Confidence 799999999999987754 25443
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.05 E-value=2.4e+02 Score=19.84 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=18.6
Q ss_pred ChhhhHHHHhcchhHHHHHHHHHHHHH
Q 012049 98 DLPGMAQAFHISSSTASAISICIALAA 124 (472)
Q Consensus 98 ~~~ki~~~~~~Sp~~~~~ig~~~g~l~ 124 (472)
+-.|+.-.|-..|+.|++.++...|++
T Consensus 16 eyGKVaPGWGTTplMgv~m~Lf~vfl~ 42 (64)
T d2axth1 16 EYGKVAPGWGTTPLMAVFMGLFLVFLL 42 (64)
T ss_dssp CSSCCCSTTTTHHHHHHHHHHHHHHHH
T ss_pred ccCcccCCcCccHHHHHHHHHHHHHHH
Confidence 345777788889999877655554444
Done!