BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012051
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/476 (25%), Positives = 202/476 (42%), Gaps = 66/476 (13%)
Query: 11 VCVTKSISVYPKSLSPQKILNLSNLDRQCP-LLMYLVFFYKPT-----FDCQNLSLDYVF 64
+ V +S V P +P + L SN+D P V+FY+PT FD +
Sbjct: 5 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAK-------- 56
Query: 65 SSLKSGLEETLSIWYPAAGRLMSLNPSDRKLNIWCNNKGAILVEALTRVKLSELGDLSQY 124
LK L L +YP AGRL D ++ I CN +G + VEA + + + GD +
Sbjct: 57 -VLKDALSRALVPFYPMAGRLK--RDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 113
Query: 125 NEFFENLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSHSLFDGPATYDFLSAWAC 184
E L+ ++ S L+V QVT F CGG S+G+G H DG + F+++W
Sbjct: 114 LEL-RRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSW-- 170
Query: 185 NSAIKKRKGVTVSDHQPVHERGLMVLDNISHVHNAGTVKSPVXXXXXXXIDHL-YQLIKN 243
S + + VT+ P +R L+ + P H+ YQ
Sbjct: 171 -SDMARGLDVTLP---PFIDRTLL------------RARDP----PQPQFQHIEYQPPPA 210
Query: 244 TMINSQNSEVGGLNFSEMGSSNYVLKTFHLSGAIVESLKRKVLGERRGN-FSCSSFELVA 302
++ Q ++ + + F L+ + +LK K + GN S SS+E++A
Sbjct: 211 LKVSPQTAKSDSV-------PETAVSIFKLTREQISALKAK--SKEDGNTISYSSYEMLA 261
Query: 303 AHLWKARTKAFALKKETMVCLQFAVDTRNKMVPPLPKGFSGNAYVLASVALTAGELEELS 362
H+W+ KA L+ + L A D R ++ P LP G+ GN A+ AG+LE
Sbjct: 262 GHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP 321
Query: 363 HEAIVEKIKEAKNSINNEYVNGYIEALDAPQGSLPPLKELTI-----------LSDWTRM 411
KI +A ++N+Y+ ++ L+ P LK L ++ W R+
Sbjct: 322 VWYAASKIHDALARMDNDYLRSALDYLEL----QPDLKALVRGAHTFKCPNLGITSWVRL 377
Query: 412 PFHKIDFLNGEAAYASPLASPIPQVAYFMQNPSDLRGIDVRIGLFPQTLDAFSHYF 467
P H DF G + P +++ + +P++ + V I L + + F +
Sbjct: 378 PIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFL 433
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/476 (25%), Positives = 201/476 (42%), Gaps = 66/476 (13%)
Query: 11 VCVTKSISVYPKSLSPQKILNLSNLDRQCP-LLMYLVFFYKPT-----FDCQNLSLDYVF 64
+ V +S V P +P + L SN+D P V+FY+PT FD +
Sbjct: 8 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAK-------- 59
Query: 65 SSLKSGLEETLSIWYPAAGRLMSLNPSDRKLNIWCNNKGAILVEALTRVKLSELGDLSQY 124
LK L L +YP AGRL D ++ I CN +G + VEA + + + GD +
Sbjct: 60 -VLKDALSRALVPFYPMAGRLK--RDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 116
Query: 125 NEFFENLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSHSLFDGPATYDFLSAWAC 184
E L+ ++ S L+V QVT F CGG S+G+G H DG + F+++W
Sbjct: 117 LEL-RRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSW-- 173
Query: 185 NSAIKKRKGVTVSDHQPVHERGLMVLDNISHVHNAGTVKSPVXXXXXXXIDHL-YQLIKN 243
S + + VT+ P +R L+ + P H+ YQ
Sbjct: 174 -SDMARGLDVTLP---PFIDRTLL------------RARDP----PQPQFQHIEYQPPPA 213
Query: 244 TMINSQNSEVGGLNFSEMGSSNYVLKTFHLSGAIVESLKRKVLGERRGN-FSCSSFELVA 302
++ Q + + + F L+ + +LK K + GN S SS+E++A
Sbjct: 214 LAVSPQTAASDSV-------PETAVSIFKLTREQISALKAK--SKEDGNTISYSSYEMLA 264
Query: 303 AHLWKARTKAFALKKETMVCLQFAVDTRNKMVPPLPKGFSGNAYVLASVALTAGELEELS 362
H+W+ KA L+ + L A D R ++ P LP G+ GN A+ AG+LE
Sbjct: 265 GHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP 324
Query: 363 HEAIVEKIKEAKNSINNEYVNGYIEALDAPQGSLPPLKELTI-----------LSDWTRM 411
KI +A ++N+Y+ ++ L+ P LK L ++ W R+
Sbjct: 325 VWYAASKIHDALARMDNDYLRSALDYLEL----QPDLKALVRGAHTFKXPNLGITSWVRL 380
Query: 412 PFHKIDFLNGEAAYASPLASPIPQVAYFMQNPSDLRGIDVRIGLFPQTLDAFSHYF 467
P H DF G + P +++ + +P++ + V I L + + F +
Sbjct: 381 PIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFL 436
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 200/476 (42%), Gaps = 66/476 (13%)
Query: 11 VCVTKSISVYPKSLSPQKILNLSNLDRQCP-LLMYLVFFYKPT-----FDCQNLSLDYVF 64
+ V +S V P +P + L SN+D P V+FY+PT FD +
Sbjct: 8 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAK-------- 59
Query: 65 SSLKSGLEETLSIWYPAAGRLMSLNPSDRKLNIWCNNKGAILVEALTRVKLSELGDLSQY 124
LK L L +YP AGRL D ++ I CN +G + VEA + + + GD +
Sbjct: 60 -VLKDALSRALVPFYPMAGRLK--RDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPT 116
Query: 125 NEFFENLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSHSLFDGPATYDFLSAWAC 184
E L+ ++ S L+V QVT F GG S+G+G H DG + F+++W
Sbjct: 117 LEL-RRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSW-- 173
Query: 185 NSAIKKRKGVTVSDHQPVHERGLMVLDNISHVHNAGTVKSPVXXXXXXXIDHL-YQLIKN 243
S + + VT+ P +R L+ + P H+ YQ
Sbjct: 174 -SDMARGLDVTLP---PFIDRTLL------------RARDP----PQPQFQHIEYQPPPA 213
Query: 244 TMINSQNSEVGGLNFSEMGSSNYVLKTFHLSGAIVESLKRKVLGERRGN-FSCSSFELVA 302
++ Q + + + F L+ + +LK K + GN S SS+E++A
Sbjct: 214 LAVSPQTAASDSV-------PETAVSIFKLTREQISALKAK--SKEDGNTISYSSYEMLA 264
Query: 303 AHLWKARTKAFALKKETMVCLQFAVDTRNKMVPPLPKGFSGNAYVLASVALTAGELEELS 362
H+W+ KA L+ + L A D R ++ P LP G+ GN A+ AG+LE
Sbjct: 265 GHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP 324
Query: 363 HEAIVEKIKEAKNSINNEYVNGYIEALDAPQGSLPPLKELTI-----------LSDWTRM 411
KI +A ++N+Y+ ++ L+ P LK L ++ W R+
Sbjct: 325 VWYAASKIHDALARMDNDYLRSALDYLEL----QPDLKALVRGAHTFKXPNLGITSWVRL 380
Query: 412 PFHKIDFLNGEAAYASPLASPIPQVAYFMQNPSDLRGIDVRIGLFPQTLDAFSHYF 467
P H DF G + P +++ + +P++ + V I L + + F +
Sbjct: 381 PIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/454 (25%), Positives = 185/454 (40%), Gaps = 75/454 (16%)
Query: 1 MAKQHENCPAVCVTKSISVYPKSLSPQKILNLSNLDRQCPLLMYLVFFYKPTFDCQNLSL 60
MA Q E + S S P+SL KI +L L C + + FY D NL
Sbjct: 1 MAPQMEKVSEELILPS-SPTPQSLKCYKISHLDQLLLTCHI--PFILFYPNPLD-SNLDP 56
Query: 61 DYVFSSLKSGLEETLSIWYPAAGRLMSLNPSDRKLNIWCNNKGAILVEALTRVKLSE--- 117
LK L + L+ +YP AGR+ ++N S + CN+ G VEA + +LS+
Sbjct: 57 AQTSQHLKQSLSKVLTHFYPLAGRI-NVNSS-----VDCNDSGVPFVEARVQAQLSQAIQ 110
Query: 118 -LGDLSQYNEFFENLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSHSLFDGPATY 176
+ +L + +++ + Y ++PL V +++ F CGG +IG+ SH + D +
Sbjct: 111 NVVELEKLDQYLPSAAYPGGKIEVNEDVPLAV-KISFFECGGTAIGVNLSHKIADVLSLA 169
Query: 177 DFLSAWACNSAIKKRKGVTVSDHQPVHERGLMVLDNISHVHNAGTVKSPVXXXXXXXIDH 236
FL+AW +G T +VL N A PV
Sbjct: 170 TFLNAWTATC-----RGETE-----------IVLPNFDL---AARHFPPVD--------- 201
Query: 237 LYQLIKNTMINSQNSEVGGLNFSEMGSSNYVLKTFHLSGAIVESLKRKV-LGERRGNFSC 295
N+ + E+ + N V+K F + +L+ + NF
Sbjct: 202 ----------NTPSPEL-------VPDENVVMKRFVFDKEKIGALRAQASSASEEKNF-- 242
Query: 296 SSFELVAAHLWK---ARTKAFALKKETMVCLQFAVDTRNKMVPPLPKGFSGNAYVLASVA 352
S +LV A++WK T+A K V +Q AV+ R++M PPLP GN L A
Sbjct: 243 SRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQ-AVNLRSRMNPPLPHYAMGNIATLLFAA 301
Query: 353 LTAGELEELSH--EAIVEKIKEAKNSINNEYVNGYIEALDAPQGSLPPLKELTILSDWTR 410
+ A ++ + +++ ++ N+E + G + L P +EL + W R
Sbjct: 302 VDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYE-----LEP-QELLSFTSWCR 355
Query: 411 MPFHKIDFLNGEAAYASPLASPIPQVAYFMQNPS 444
+ F+ +DF G+ A P A M S
Sbjct: 356 LGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRS 389
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 40/308 (12%)
Query: 46 VFFYKPTFDCQNLSLDYVFSSLKSGLEETLSIWYPAAGRLMSLNPSDRKLNI-WCNNKGA 104
+FFY+ + + V ++K L TL +YP G+L+ +K I +
Sbjct: 45 LFFYELPITRSQFT-ETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSV 103
Query: 105 ILVEALTRVKLSEL-GDLSQYNEFFENLVYKPVFN-----GNFSEMPLVVAQVTRFACGG 158
+ A + L+EL G+ + + F +LV P+ + ++PL QVT F G
Sbjct: 104 AVTFAECNLDLNELTGNHPRNCDKFYDLV--PILGESTRLSDCIKIPLFSVQVTLFPNQG 161
Query: 159 YSIGIGTSHSLFDGPATYDFLSAW-ACNSAIKKRKGVTVSDHQPVHERGLMVLDNISHVH 217
+IGI H L D + FL AW + + + + +P+++R
Sbjct: 162 IAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDR------------ 209
Query: 218 NAGTVKSPVXXXXXXXIDHLYQLIKNTMINSQNSEVGGLNFSEMGSSNYVLKTFHLSGAI 277
+K P+ +D Y +K + S N + + S G S+ + TF L+ A+
Sbjct: 210 ---IIKYPM-------LDEAY--LKRAKVESFNEDY--VTQSLAGPSDKLRATFILTRAV 255
Query: 278 VESLKRKVLGERRGNFSCSSFELVAAHLWKARTKAFALKKETMVCLQFAVDTRNKMVPPL 337
+ LK +VL + SSF + A++W K+ + + + F +D R +M PP+
Sbjct: 256 INQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKS---RNDKLQLFGFPIDRRARMKPPI 312
Query: 338 PKGFSGNA 345
P + GN
Sbjct: 313 PTAYFGNC 320
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 40/308 (12%)
Query: 46 VFFYKPTFDCQNLSLDYVFSSLKSGLEETLSIWYPAAGRLMSLNPSDRKLNI-WCNNKGA 104
+FFY+ + + V ++K L TL +YP G+L+ +K I +
Sbjct: 45 LFFYELPITRSQFT-ETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSV 103
Query: 105 ILVEALTRVKLSEL-GDLSQYNEFFENLVYKPVFN-----GNFSEMPLVVAQVTRFACGG 158
+ A + L+EL G+ + + F +LV P+ + ++PL QVT F G
Sbjct: 104 AVTFAECNLDLNELTGNHPRNCDKFYDLV--PILGESTRLSDCIKIPLFSVQVTLFPNQG 161
Query: 159 YSIGIGTSHSLFDGPATYDFLSAW-ACNSAIKKRKGVTVSDHQPVHERGLMVLDNISHVH 217
+IGI H L D + FL AW + + + + +P+++R
Sbjct: 162 IAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDR------------ 209
Query: 218 NAGTVKSPVXXXXXXXIDHLYQLIKNTMINSQNSEVGGLNFSEMGSSNYVLKTFHLSGAI 277
+K P +D Y +K + S N + + S G S+ + TF L+ A+
Sbjct: 210 ---IIKYPX-------LDEAY--LKRAKVESFNEDY--VTQSLAGPSDKLRATFILTRAV 255
Query: 278 VESLKRKVLGERRGNFSCSSFELVAAHLWKARTKAFALKKETMVCLQFAVDTRNKMVPPL 337
+ LK +VL + SSF + A++W K+ + + + F +D R + PP+
Sbjct: 256 INQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKS---RNDKLQLFGFPIDRRARXKPPI 312
Query: 338 PKGFSGNA 345
P + GN
Sbjct: 313 PTAYFGNC 320
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 99/261 (37%), Gaps = 41/261 (15%)
Query: 145 PLVVAQVTRFACGGYSIGIGTSHSLFDGPATYDFLSAWACNSAIKKRKGVTVSDHQPVHE 204
P++ QVT F G SIG H DG F+ AWA + + ++ P ++
Sbjct: 143 PVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYD 202
Query: 205 RGLMVLDNISHVHNAGTVKSPVXXXXXXXIDHLYQLIKNTMINSQNSEVGGLNFSEMGSS 264
R ++ N G S ++ K + S+V +
Sbjct: 203 RSVIKDPN-------GVGXS------------IWNEXKKYKHXXKXSDV-------VTPP 236
Query: 265 NYVLKTFHLSGAIVESLKRKVLGERRGNFSCSSFELVAAHLWKARTKAFALKKETM---- 320
+ V TF ++ + LK VL R +SF + A++W K+ A E +
Sbjct: 237 DKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENG 296
Query: 321 -VCLQFAVDTRNKMVPPLPKGFSGNAYV-----LASVALTAGE----LEELSHEAIVEKI 370
A D R + PPLP + GNA V V L E EL EAI ++
Sbjct: 297 XEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRX 356
Query: 371 KEAKNSINNEYVNGYIEALDA 391
K+ + ++ + Y + +DA
Sbjct: 357 KDEEWILSGSWFKEY-DKVDA 376
>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 910
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 26 PQKILNLSNLDRQCPLLMYLVFFYKPTFDCQNLSL-DYVFSSLKSGLEETLSIWYPAAGR 84
P+ + N + ++C + + L ++ P F ++S DY+ K GLEE L+ +P
Sbjct: 254 PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEE 313
Query: 85 LMSLNPS-DRKLN 96
+ P D +L
Sbjct: 314 RLKRRPEYDERLE 326
>pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
Coli Replicative Dna Polymerase Iii
Length = 917
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 26 PQKILNLSNLDRQCPLLMYLVFFYKPTFDCQNLSL-DYVFSSLKSGLEETLSIWYPAAGR 84
P+ + N + ++C + + L ++ P F + S DY+ K GLEE L+ +P
Sbjct: 254 PEALANTVEIAKRCNVTVRLGEYFLPQFPTGDXSTEDYLVKRAKEGLEERLAFLFPDEEE 313
Query: 85 LMSLNPS-DRKLN 96
+ P D +L
Sbjct: 314 RLKRRPEYDERLE 326
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 392 PQGSLPPLKELTILSDWTRM---PFHKID 417
P S PP KEL + W +M PF KID
Sbjct: 580 PSDSSPPFKELLLAEKWAKMNKLPFPKID 608
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 130 NLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSHS-----LFDGPATYDFLSAW-A 183
+L+Y+P FN NF + V + R+ I T HS L +G L W +
Sbjct: 35 SLLYQPNFNTNFEDRNAFVTGIARY------IEQATVHSSMNEMLEEGQEYAVMLYTWRS 88
Query: 184 CNSAIKKRKGVTVSDHQPVHERGLMVLD 211
C+ AI + K + ++E+ + VL+
Sbjct: 89 CSRAIPQVKCNEQPNRVEIYEKTVEVLE 116
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 274 SGAIVESLKRKVLGERRGN-FSCSSFELVAAHLWKARTKAFALKKETMVCLQ-------F 325
+G +V + + K E +G+ F SS V AHL K R+ F LK + L F
Sbjct: 102 NGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIK-RSGHFTLKDQIKNSLSMLKGAYAF 160
Query: 326 AVDTRNKMV--------PPLPKGFSGNAYVLAS 350
+ T +M+ PL G G+AYV+AS
Sbjct: 161 LIMTETEMIVALDPNGLRPLSIGMMGDAYVVAS 193
>pdb|3A0N|A Chain A, Crystal Structure Of D-Glucuronic Acid-Bound Alginate
Lyase Val-1 From Chlorella Virus
pdb|3GNE|A Chain A, Crystal Structure Of Alginate Lyase Val-1 From Chlorella
Virus
pdb|3GNE|B Chain B, Crystal Structure Of Alginate Lyase Val-1 From Chlorella
Virus
pdb|3IM0|A Chain A, Crystal Structure Of Chlorella Virus Val-1 Soaked In 200mm
D- Glucuronic Acid, 10% Peg-3350, And 200mm Glycine-Naoh
(Ph 10.0)
Length = 252
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 400 KELTILSDWTRMPFHKIDFLNGEAAYASPLASPIPQVAYF 439
KE+ +W+R P I + + PL SP QVAYF
Sbjct: 196 KEVLKRINWSRSPDLLISRFDWNTFFGGPLPSPKNQVAYF 235
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 274 SGAIVESLKRKVLGERRGN-FSCSSFELVAAHLWKARTKAFALKKETMVCLQ-------F 325
+G +V + + K E +G+ F SS V AHL K R+ F LK + L F
Sbjct: 102 NGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIK-RSGHFTLKDQIKNSLSMLKGAYAF 160
Query: 326 AVDTRNKMV--------PPLPKGFSGNAYVLAS 350
+ T +M+ PL G G+AYV+AS
Sbjct: 161 LIMTETEMIVALDPNGLRPLSIGMMGDAYVVAS 193
>pdb|4FBJ|A Chain A, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 261
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 378 NNEYVNGYIEALDAPQGSLPPLKELTILSDW 408
N++ GYI D QG+LPPLK ++DW
Sbjct: 143 NDQETVGYIYQSDLGQGALPPLK----IADW 169
>pdb|3GQJ|A Chain A, Crystal Structure Of Cell Inhibiting Factor (Cif) From
Photorhabdus Luminescens
Length = 261
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 378 NNEYVNGYIEALDAPQGSLPPLKELTILSDW 408
N++ GYI D QG+LPPLK ++DW
Sbjct: 143 NDQETVGYIYQSDLGQGALPPLK----IADW 169
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 338 PKGFSGNAYVLAS---VALTAGELEELSHEAIVEKIKEAKNSI 377
P+G + A VLA + + +E+ SHE +VEK+K++ + +
Sbjct: 41 PQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRV 83
>pdb|2EWF|A Chain A, Crystal Structure Of The Site-specific Dna Nickase
N.bspd6i
Length = 610
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 45 LVFFYKPTFDCQNLSLDYVFSSLKSGLEETLSIW 78
+V Y+ T +C+ ++ +K+GLEETL+ W
Sbjct: 574 MVSLYRTTIECER-----KYTQIKAGLEETLNNW 602
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 59 SLDYVFSSLK---SGLEETLSIWYPAAGRLMSLNPSDRKLNIWCNNKGAILVEALTRVKL 115
+DY+ LK S +W P M+L P + W G + +E R
Sbjct: 126 QVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQ-WYVKHGKLHLEVRARSND 184
Query: 116 SELGDLSQYNEFFENLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSH 167
LG + +N F N++ + ++AQVT + G Y IG H
Sbjct: 185 MALG--NPFNVFQYNVLQR------------MIAQVTGYELGEYIFNIGDCH 222
>pdb|4F1Z|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F20|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F24|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
Length = 363
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 134 KPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSHSLFDGPATYDFLSAWACNSAIKKRKG 193
K NG FS +PL + G Y I + +FD TY++ S A I K G
Sbjct: 137 KENINGQFS-LPLFTDRAKAPKSGTYDANINIADEMFDNKITYNYSSPIA---GIDKPNG 192
Query: 194 VTVS 197
+S
Sbjct: 193 ANIS 196
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 59 SLDYVFSSLK---SGLEETLSIWYPAAGRLMSLNPSDRKLNIWCNNKGAILVEALTRVKL 115
+DY+ LK S +W P M+L P + W G + +E R
Sbjct: 125 QVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQ-WYVKHGKLHLEVRARSND 183
Query: 116 SELGDLSQYNEFFENLVYKPVFNGNFSEMPLVVAQVTRFACGGYSIGIGTSH 167
LG + +N F N++ + ++AQVT + G Y IG H
Sbjct: 184 MALG--NPFNVFQYNVLQR------------MIAQVTGYELGEYIFNIGDCH 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,491,607
Number of Sequences: 62578
Number of extensions: 548516
Number of successful extensions: 1220
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 28
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)