Query 012052
Match_columns 472
No_of_seqs 285 out of 1714
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 7.3E-87 1.6E-91 673.2 21.3 310 26-345 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.6E-45 7.7E-50 351.4 23.5 251 23-337 43-305 (305)
3 smart00768 X8 Possibly involve 100.0 4.1E-29 8.8E-34 206.7 8.8 85 383-468 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 2.6E-23 5.6E-28 169.1 6.5 73 383-455 1-78 (78)
5 PF07745 Glyco_hydro_53: Glyco 98.9 1.3E-07 2.9E-12 96.9 21.5 245 40-342 26-328 (332)
6 PF03198 Glyco_hydro_72: Gluca 98.6 8.8E-07 1.9E-11 89.3 13.9 128 25-157 29-183 (314)
7 COG3867 Arabinogalactan endo-1 98.4 1.3E-05 2.8E-10 79.8 15.7 249 39-345 64-390 (403)
8 PRK10150 beta-D-glucuronidase; 97.9 0.0018 3.9E-08 71.9 23.0 258 26-344 295-586 (604)
9 PF00150 Cellulase: Cellulase 97.8 0.0026 5.7E-08 62.5 19.8 128 25-154 10-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.4 0.014 3.1E-07 57.7 17.9 79 246-342 171-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.8 0.056 1.2E-06 53.2 16.2 66 258-338 166-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 91.2 1.5 3.3E-05 44.1 10.2 96 25-120 17-132 (298)
13 PRK10340 ebgA cryptic beta-D-g 89.0 7.6 0.00017 46.2 14.8 98 25-122 336-452 (1021)
14 PRK09936 hypothetical protein; 88.7 11 0.00024 38.3 13.6 132 24-157 20-182 (296)
15 PF00232 Glyco_hydro_1: Glycos 84.2 0.48 1E-05 51.0 1.4 73 255-336 353-430 (455)
16 cd02875 GH18_chitobiase Chitob 81.9 5.4 0.00012 41.7 8.1 95 51-148 55-151 (358)
17 PF02449 Glyco_hydro_42: Beta- 75.6 12 0.00025 39.2 8.3 82 41-122 13-140 (374)
18 TIGR03356 BGL beta-galactosida 75.2 8.5 0.00018 41.2 7.3 77 255-338 335-414 (427)
19 PRK13511 6-phospho-beta-galact 70.5 11 0.00023 41.0 6.8 75 255-338 365-446 (469)
20 PLN02814 beta-glucosidase 61.2 13 0.00027 40.9 5.1 75 255-338 385-461 (504)
21 PF00925 GTP_cyclohydro2: GTP 61.0 10 0.00022 35.3 3.9 40 41-80 129-168 (169)
22 PLN03059 beta-galactosidase; P 60.8 1.7E+02 0.0036 34.3 14.0 153 3-158 5-223 (840)
23 smart00481 POLIIIAc DNA polyme 60.5 28 0.0006 26.7 5.7 44 37-80 14-62 (67)
24 TIGR00505 ribA GTP cyclohydrol 54.0 19 0.00042 34.2 4.5 33 44-76 131-163 (191)
25 COG4782 Uncharacterized protei 54.0 49 0.0011 34.8 7.7 70 235-314 125-197 (377)
26 PRK00393 ribA GTP cyclohydrola 53.0 20 0.00044 34.2 4.5 33 44-76 134-166 (197)
27 cd02872 GH18_chitolectin_chito 51.9 49 0.0011 34.1 7.5 76 70-146 68-151 (362)
28 PLN03030 cationic peroxidase; 51.8 12 0.00025 38.8 2.7 40 6-45 3-42 (324)
29 COG4669 EscJ Type III secretor 47.0 1.1E+02 0.0024 30.3 8.5 82 7-112 6-87 (246)
30 PF04909 Amidohydro_2: Amidohy 45.6 1.8E+02 0.004 27.7 10.1 118 93-268 56-175 (273)
31 PRK12485 bifunctional 3,4-dihy 44.5 26 0.00056 36.9 4.0 33 43-76 330-362 (369)
32 cd00641 GTP_cyclohydro2 GTP cy 44.0 34 0.00073 32.5 4.4 33 44-76 133-165 (193)
33 PRK09525 lacZ beta-D-galactosi 43.7 1.1E+02 0.0025 36.6 9.6 97 25-121 352-464 (1027)
34 PLN02998 beta-glucosidase 42.9 51 0.0011 36.1 6.2 75 255-338 390-466 (497)
35 PF06180 CbiK: Cobalt chelatas 42.0 2.1E+02 0.0045 28.8 9.9 142 36-208 56-210 (262)
36 PRK14019 bifunctional 3,4-dihy 41.3 31 0.00068 36.3 4.1 32 44-76 328-359 (367)
37 PRK09589 celA 6-phospho-beta-g 40.9 54 0.0012 35.7 6.0 74 258-338 368-447 (476)
38 cd02874 GH18_CFLE_spore_hydrol 40.3 70 0.0015 32.3 6.4 82 62-147 48-138 (313)
39 PRK09593 arb 6-phospho-beta-gl 39.8 45 0.00097 36.4 5.1 74 258-338 369-448 (478)
40 cd02873 GH18_IDGF The IDGF's ( 39.4 1.2E+02 0.0027 32.2 8.3 17 131-147 171-187 (413)
41 KOG0626 Beta-glucosidase, lact 39.0 52 0.0011 36.2 5.3 75 254-336 404-486 (524)
42 PF14488 DUF4434: Domain of un 38.0 1.8E+02 0.0039 27.0 8.2 79 62-145 68-151 (166)
43 PF03662 Glyco_hydro_79n: Glyc 37.5 82 0.0018 32.6 6.3 81 64-144 114-202 (319)
44 PF05990 DUF900: Alpha/beta hy 36.7 1.1E+02 0.0023 29.9 6.8 58 236-296 28-88 (233)
45 PLN02849 beta-glucosidase 36.6 1.1E+02 0.0025 33.5 7.7 75 255-338 383-461 (503)
46 PRK09314 bifunctional 3,4-dihy 36.6 44 0.00096 34.8 4.2 39 38-76 295-334 (339)
47 PRK09318 bifunctional 3,4-dihy 35.8 49 0.0011 35.1 4.5 37 44-80 320-356 (387)
48 PRK08815 GTP cyclohydrolase; P 35.6 49 0.0011 35.0 4.4 37 44-80 305-341 (375)
49 TIGR01233 lacG 6-phospho-beta- 35.3 99 0.0021 33.6 6.9 75 255-338 364-444 (467)
50 PRK09311 bifunctional 3,4-dihy 34.7 53 0.0011 35.1 4.5 34 43-76 338-371 (402)
51 PRK15014 6-phospho-beta-glucos 34.6 60 0.0013 35.4 5.1 74 258-338 369-448 (477)
52 PLN02831 Bifunctional GTP cycl 34.6 52 0.0011 35.7 4.5 37 43-79 372-408 (450)
53 PRK09319 bifunctional 3,4-dihy 34.2 53 0.0011 36.5 4.5 38 43-80 342-379 (555)
54 PF14587 Glyco_hydr_30_2: O-Gl 33.9 3.1E+02 0.0067 29.2 9.9 93 63-158 108-227 (384)
55 PF00331 Glyco_hydro_10: Glyco 32.6 56 0.0012 33.5 4.3 92 243-341 219-311 (320)
56 PF06117 DUF957: Enterobacteri 32.2 67 0.0015 25.2 3.5 40 94-145 13-55 (65)
57 TIGR03632 bact_S11 30S ribosom 31.5 1.1E+02 0.0024 26.4 5.2 36 41-76 50-90 (108)
58 cd04743 NPD_PKS 2-Nitropropane 30.8 3.4E+02 0.0075 28.1 9.6 79 24-120 56-134 (320)
59 COG3934 Endo-beta-mannanase [C 29.2 1.9E+02 0.0042 31.7 7.5 186 95-343 123-312 (587)
60 PF15183 MRAP: Melanocortin-2 29.0 47 0.001 27.6 2.3 23 2-24 44-66 (90)
61 PRK09852 cryptic 6-phospho-bet 28.5 1.1E+02 0.0023 33.5 5.7 73 258-338 366-444 (474)
62 COG0807 RibA GTP cyclohydrolas 28.0 87 0.0019 30.1 4.3 38 44-81 133-170 (193)
63 KOG0078 GTP-binding protein SE 28.0 1.4E+02 0.0031 29.0 5.8 80 22-120 41-127 (207)
64 TIGR01579 MiaB-like-C MiaB-lik 27.9 6.6E+02 0.014 26.4 11.6 140 36-206 165-330 (414)
65 cd06545 GH18_3CO4_chitinase Th 27.5 1.3E+02 0.0028 29.4 5.7 81 63-147 50-133 (253)
66 PRK07198 hypothetical protein; 27.3 52 0.0011 35.0 2.9 37 44-80 338-375 (418)
67 cd00598 GH18_chitinase-like Th 26.6 1.2E+02 0.0026 28.1 5.2 84 63-147 53-142 (210)
68 COG1433 Uncharacterized conser 25.4 1.4E+02 0.0031 26.4 4.9 40 41-80 55-94 (121)
69 COG4213 XylF ABC-type xylose t 24.9 1.6E+02 0.0034 30.6 5.7 75 62-156 175-250 (341)
70 TIGR03628 arch_S11P archaeal r 24.9 1.6E+02 0.0036 25.8 5.2 37 40-76 52-101 (114)
71 PRK06552 keto-hydroxyglutarate 24.6 6.4E+02 0.014 24.3 10.0 87 37-143 116-210 (213)
72 cd02876 GH18_SI-CLP Stabilin-1 23.7 4.7E+02 0.01 26.4 9.2 85 62-147 54-148 (318)
73 COG2896 MoaA Molybdenum cofact 23.5 8E+02 0.017 25.5 10.6 137 36-207 41-189 (322)
74 CHL00041 rps11 ribosomal prote 22.1 2.1E+02 0.0045 25.1 5.3 36 41-76 63-103 (116)
75 COG2159 Predicted metal-depend 21.8 4E+02 0.0086 27.0 8.1 94 133-271 113-208 (293)
76 PF00150 Cellulase: Cellulase 21.8 3.5E+02 0.0076 26.0 7.5 68 242-322 63-134 (281)
77 PF14871 GHL6: Hypothetical gl 21.3 2.3E+02 0.005 25.3 5.6 41 40-80 2-65 (132)
78 PRK09607 rps11p 30S ribosomal 20.8 2.2E+02 0.0047 25.7 5.2 37 40-76 59-108 (132)
79 PRK03941 NTPase; Reviewed 20.3 6.1E+02 0.013 23.9 8.3 60 73-144 1-61 (174)
80 PHA01735 hypothetical protein 20.0 57 0.0012 26.1 1.2 26 88-121 32-57 (76)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=7.3e-87 Score=673.24 Aligned_cols=310 Identities=54% Similarity=0.935 Sum_probs=255.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecChhhHHHhhhChHHHHHHHHHhhhhc
Q 012052 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKY 105 (472)
Q Consensus 26 ~GvnYg~~~~n~ps~~~v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~ 105 (472)
+|||||+.++|+|+|.+|++|||+++|++||||++|+++|+|++++||+|++||+|++|+++++++..|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhhhH
Q 012052 106 YPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPM 185 (472)
Q Consensus 106 ~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ 185 (472)
+|.++|++|+||||++..... ..|+|+|+++|++|++.||+++|||+|+++++++.++||||+|.|++++. ..|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~--~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN--AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG--GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHHHH
T ss_pred CcccceeeeecccccccCccc--eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhhHH
Confidence 999999999999999987421 15999999999999999999899999999999999999999999999987 689999
Q ss_pred HHHHHhcCCccccccCCccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEeee
Q 012052 186 LEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTET 265 (472)
Q Consensus 186 ldfL~~~~sp~~vNiyPyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~~y~n~fda~~dav~~A~~k~g~~~~~vvVtET 265 (472)
++||.+++||||+|+||||+|..+|.+++||||+|+++..+.|. +++|+||||+|+|++++||+|+|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998777765 8899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCCCCCCCccccccCCCCCeeeeecc
Q 012052 266 GWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPTSERNYGLFYPNEQTVYDSPF 345 (472)
Q Consensus 266 GWPS~G~~~~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~~K~g~~~E~~wGlf~~d~~~ky~~~~ 345 (472)
||||+|+ .+|+++||++|++++++|+. .|||+||+..+++||||||||+||+|+.+|||||||++||+|||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999998 35999999999999999996 799999999999999999999999987799999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-45 Score=351.45 Aligned_cols=251 Identities=22% Similarity=0.331 Sum_probs=205.3
Q ss_pred CCceeEEecCCCCC--CCCHHHHHHHHHhC-C-CCEEEEecCC----hHHHHHhhcCCceEEEecChh-hHHHhhhChHH
Q 012052 23 TGKVGINYGRVANN--LPSPEKVVELLKSQ-R-IDRVKTYDTD----SAVLAALANSDISVVVAFPNE-ELSKAAADQSF 93 (472)
Q Consensus 23 ~~~~GvnYg~~~~n--~ps~~~v~~ll~s~-~-~~~VRlY~~d----~~vL~A~~~tgi~V~lGv~n~-~l~~la~~~~~ 93 (472)
.+..+|+||++.++ ||+.+++..+|+.. . ...||+|.+| .+|++|+...|++|.||||.. ++. .+
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~------~~ 116 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH------DA 116 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh------hh
Confidence 45689999999876 99999998777653 2 3499999987 578899999999999999853 322 12
Q ss_pred HHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccc
Q 012052 94 TDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSF 173 (472)
Q Consensus 94 a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F 173 (472)
.+..++..+++++.++.|++|.||||+|+|++.+..+|+.+|..+|.+|+.+|++ +||+|+++|.+|.+.
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-------- 186 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-------- 186 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC--------
Confidence 2325667788888889999999999999998776666999999999999999997 579999999998863
Q ss_pred ccccchhhhhhHHHHHHhcCCccccccCCccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHHc
Q 012052 174 KSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAI 253 (472)
Q Consensus 174 ~~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~~y~n~fda~~dav~~A~~k~ 253 (472)
|.|+...||+ |+|.||||+...-. +. .+ .+|-.|++.+++++
T Consensus 187 ------p~l~~~SDfi-------a~N~~aYwd~~~~a-----------------~~----~~-~f~~~q~e~vqsa~--- 228 (305)
T COG5309 187 ------PELCQASDFI-------AANAHAYWDGQTVA-----------------NA----AG-TFLLEQLERVQSAC--- 228 (305)
T ss_pred ------hHHhhhhhhh-------hcccchhccccchh-----------------hh----hh-HHHHHHHHHHHHhc---
Confidence 4578888888 99999999975321 11 11 24556688888766
Q ss_pred CCCCceEEEeeecCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCC-CC-CCCccc
Q 012052 254 SYNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKP-GP-TSERNY 330 (472)
Q Consensus 254 g~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~~K~-g~-~~E~~w 330 (472)
| .+++++|+||||||.|..+ ++.||++||+.|++++++.+++ ..+++|+||+|||+||. |. ++|+||
T Consensus 229 g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkyw 298 (305)
T COG5309 229 G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYW 298 (305)
T ss_pred C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhce
Confidence 2 3499999999999999996 5679999999999999999874 36899999999999994 54 899999
Q ss_pred cccCCCC
Q 012052 331 GLFYPNE 337 (472)
Q Consensus 331 Glf~~d~ 337 (472)
|++..|+
T Consensus 299 Gv~~s~~ 305 (305)
T COG5309 299 GVLSSDR 305 (305)
T ss_pred eeeccCC
Confidence 9998875
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=4.1e-29 Score=206.69 Aligned_cols=85 Identities=62% Similarity=1.204 Sum_probs=82.9
Q ss_pred ceEEecCCCChHHHHHHhhhhhcCCCCCCcccCCCCCccCCCChhhhHhHHHHHHHHHccCCCCCCCCCCceEEEecCCC
Q 012052 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPK 462 (472)
Q Consensus 383 ~~CV~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~c~~~~t~~~~~Sya~N~Yyq~~~~~~~~CdF~G~a~~~~~~ps 462 (472)
+|||+|+++++++|+++|||||+++ +||++|++||+||+||++++|||||||+|||++++..++|||+|.|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred CCceee
Q 012052 463 YGKCQF 468 (472)
Q Consensus 463 ~~~C~f 468 (472)
.++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999986
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=2.6e-23 Score=169.09 Aligned_cols=73 Identities=53% Similarity=1.021 Sum_probs=63.4
Q ss_pred ceEEecCCCChHHHHHHhhhhhcCCCCCCcccCCCCC-----ccCCCChhhhHhHHHHHHHHHccCCCCCCCCCCceE
Q 012052 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGAT-----CYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAY 455 (472)
Q Consensus 383 ~~CV~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~-----c~~~~t~~~~~Sya~N~Yyq~~~~~~~~CdF~G~a~ 455 (472)
+|||+++++++++|+++|||||+++++||++|++||+ .||+|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999998899999999998 899999999999999999999999999999999996
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.93 E-value=1.3e-07 Score=96.89 Aligned_cols=245 Identities=18% Similarity=0.253 Sum_probs=122.5
Q ss_pred HHHHHHHHHhCCCCEEE--Eec-C------C-hHHH---HHhhcCCceEEEecCh-----h----hHHHhhhCh------
Q 012052 40 PEKVVELLKSQRIDRVK--TYD-T------D-SAVL---AALANSDISVVVAFPN-----E----ELSKAAADQ------ 91 (472)
Q Consensus 40 ~~~v~~ll~s~~~~~VR--lY~-~------d-~~vL---~A~~~tgi~V~lGv~n-----~----~l~~la~~~------ 91 (472)
..++.++||..|++.|| +|. + | ..++ +.+++.||+|+|-.-- + .++.-..+.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999987555 452 1 2 2344 5556899999998721 1 122211111
Q ss_pred HHHHHHHHHhhhhcC-CCceEEEEEeccccccC-----CCCChhh-HHHHHHHHHHHHHhCCCCCCeEEecccccccccc
Q 012052 92 SFTDNWVQANISKYY-PATKIEAVAVGNEVFAD-----PKNTTPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQN 164 (472)
Q Consensus 92 ~~a~~wv~~~v~~~~-p~~~I~~I~VGNE~l~~-----~~~~~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~ 164 (472)
++..++.+.-+...- -++.++.|-||||+-.. +...-.. +...++...+++|+.+-+ +||-.-.. .
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~-~---- 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLA-N---- 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEC-C----
Confidence 122233333332221 24678999999998543 1222233 788888888888875433 45432211 0
Q ss_pred cCCCCCcccccccchhhhhhHHHHHHhcC---CccccccCCccccccCCCccccccccccCCCCcccCCCCccccchHHH
Q 012052 165 SYPPSSGSFKSDLIEPALKPMLEFLRKTS---SYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDA 241 (472)
Q Consensus 165 s~pPS~g~F~~~~~~~~l~~~ldfL~~~~---sp~~vNiyPyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~~y~n~fda 241 (472)
|. + . ..+.-..+-|...+ |.++++.||||...- +.+..
T Consensus 179 ---~~------~-~-~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l----------------------------~~l~~ 219 (332)
T PF07745_consen 179 ---GG------D-N-DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL----------------------------EDLKN 219 (332)
T ss_dssp ---TT------S-H-HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H----------------------------HHHHH
T ss_pred ---CC------c-h-HHHHHHHHHHHhcCCCcceEEEecCCCCcchH----------------------------HHHHH
Confidence 00 0 0 12333444444433 678999999997510 11233
Q ss_pred HHHHHHHHHHHcCCCCceEEEeeecCCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 012052 242 QLDAVFAAMSAISYNDVKVVVTETGWPSVGDE-----NE---------AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDP 307 (472)
Q Consensus 242 ~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~-----~~---------~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~ 307 (472)
.++.+. ++. +|+|+|.|||||..-+. +. -.+|++.|++|++.+++.+.+-.+ +..
T Consensus 220 ~l~~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g 288 (332)
T PF07745_consen 220 NLNDLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGG 288 (332)
T ss_dssp HHHHHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTE
T ss_pred HHHHHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCe
Confidence 333332 343 58999999999998211 11 126999999999999999985211 123
Q ss_pred ccEEEEE-ecCCCC-----CCCCCCCccccccCCCCCeeee
Q 012052 308 LNVYLFA-LFNENQ-----KPGPTSERNYGLFYPNEQTVYD 342 (472)
Q Consensus 308 ~~~y~F~-~FDE~~-----K~g~~~E~~wGlf~~d~~~ky~ 342 (472)
+-+|+-| ..-..+ ..|...|.. +||+.+|++--.
T Consensus 289 ~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 289 LGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred EEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 4455544 222221 233344444 899988876433
No 6
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.58 E-value=8.8e-07 Score=89.28 Aligned_cols=128 Identities=19% Similarity=0.334 Sum_probs=72.9
Q ss_pred ceeEEecCCCC-------CCCCHHHH----HHHHHhCCCCEEEEecCCh-----HHHHHhhcCCceEEEecChh--hHHH
Q 012052 25 KVGINYGRVAN-------NLPSPEKV----VELLKSQRIDRVKTYDTDS-----AVLAALANSDISVVVAFPNE--ELSK 86 (472)
Q Consensus 25 ~~GvnYg~~~~-------n~ps~~~v----~~ll~s~~~~~VRlY~~d~-----~vL~A~~~tgi~V~lGv~n~--~l~~ 86 (472)
..||.|-+.++ |..+-.++ +.+||.+|+..||+|..|+ .-+++|++.||-|++.|... .|..
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 47999988765 32222233 3588899999999998873 56899999999999999532 2221
Q ss_pred hhhChHHHHHH-------HHHhhhhcCCCceEEEEEeccccccCCCC-Chhh-HHHHHHHHHHHHHhCCCCCCeEEeccc
Q 012052 87 AAADQSFTDNW-------VQANISKYYPATKIEAVAVGNEVFADPKN-TTPF-LVPAMKNVYNSLVKYKLDSNVKVSSPI 157 (472)
Q Consensus 87 la~~~~~a~~w-------v~~~v~~~~p~~~I~~I~VGNE~l~~~~~-~~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~ 157 (472)
. ++ +..| +.+-|..|-.-.|+-+..+|||++..... ..+. +-.+++.+|+-+++.++. +|+|+-+-
T Consensus 109 ~--~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa 183 (314)
T PF03198_consen 109 S--DP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA 183 (314)
T ss_dssp T--S--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred C--CC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc
Confidence 1 11 1122 23334444333789999999999987432 2345 888999999999999985 49998653
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=1.3e-05 Score=79.84 Aligned_cols=249 Identities=18% Similarity=0.297 Sum_probs=131.7
Q ss_pred CHHHHHHHHHhCCCCEEE--Ee----cCC--------hHH------HHHhhcCCceEEEecChhhHHHhhhCh---HHHH
Q 012052 39 SPEKVVELLKSQRIDRVK--TY----DTD--------SAV------LAALANSDISVVVAFPNEELSKAAADQ---SFTD 95 (472)
Q Consensus 39 s~~~v~~ll~s~~~~~VR--lY----~~d--------~~v------L~A~~~tgi~V~lGv~n~~l~~la~~~---~~a~ 95 (472)
-..++.+.||..|+..|| +| |.| .++ -+-+++.||||++-.--+|- ..++ ..-+
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf---waDPakQ~kPk 140 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF---WADPAKQKKPK 140 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh---ccChhhcCCcH
Confidence 356778899999987555 44 333 122 24456899999998743221 0111 0111
Q ss_pred HH-------HHHhhhhc--------C-CCceEEEEEeccccccC-----CCC-ChhhHHHHHHHHHHHHHhCCCCCCeEE
Q 012052 96 NW-------VQANISKY--------Y-PATKIEAVAVGNEVFAD-----PKN-TTPFLVPAMKNVYNSLVKYKLDSNVKV 153 (472)
Q Consensus 96 ~w-------v~~~v~~~--------~-p~~~I~~I~VGNE~l~~-----~~~-~~~~L~~am~nv~~aL~~~gl~~~IkV 153 (472)
+| +++.|-.| . -...+..|-||||.-.. ++. ....+...++.--+++|... ..|||
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv 218 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKV 218 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceE
Confidence 22 22222222 1 23668899999998542 122 22225566666666666543 23665
Q ss_pred ecccccccccccCCCCCcccccccchhhhhhHHHHHHhcCCccccccCCccccccCCCccccccccccCCCCcccCCCCc
Q 012052 154 SSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGL 233 (472)
Q Consensus 154 sT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~ 233 (472)
-.-.+ + |-..+.|+- +.+..-+.-+|| +.|.+--||||.+.-+
T Consensus 219 ~lHla-----~--g~~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgtl~------------------------ 261 (403)
T COG3867 219 ALHLA-----E--GENNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGTLN------------------------ 261 (403)
T ss_pred EEEec-----C--CCCCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCcHH------------------------
Confidence 43322 1 112234431 111112222333 4668889999987321
Q ss_pred cccchHHHHHHHHHHHHHHcCCCCceEEEeeecC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 012052 234 KYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGW--------------PSVGDENEAGAGAANAAAYNGNLVRRVLSGSG 299 (472)
Q Consensus 234 ~y~n~fda~~dav~~A~~k~g~~~~~vvVtETGW--------------PS~G~~~~~~as~~na~~y~~~li~~~~s~~G 299 (472)
| +...++.+. .+ -+|.|+|.||+. |+.+...+-..+++-|++|.+++|+.+...
T Consensus 262 ---n-L~~nl~dia---~r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv-- 329 (403)
T COG3867 262 ---N-LTTNLNDIA---SR---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV-- 329 (403)
T ss_pred ---H-HHhHHHHHH---HH---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--
Confidence 1 111122221 12 368999999998 554432223478899999999999998742
Q ss_pred CCCCCCCCccEEEEE-------------------ecCCCCCCCCCCCccccccCCCCCeeeeecc
Q 012052 300 TPLRPKDPLNVYLFA-------------------LFNENQKPGPTSERNYGLFYPNEQTVYDSPF 345 (472)
Q Consensus 300 tp~rp~~~~~~y~F~-------------------~FDE~~K~g~~~E~~wGlf~~d~~~ky~~~~ 345 (472)
|.-. .+-+|+.| .-.|+|+.|. .--+--||+.+|.|--.|..
T Consensus 330 -p~~~--GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gs-avdNqaLfdf~G~~LPSl~v 390 (403)
T COG3867 330 -PKSN--GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGS-AVDNQALFDFNGHPLPSLNV 390 (403)
T ss_pred -CCCC--ceEEEEecccceeccCCCccccchhhccCcccccCCC-ccchhhhhhccCCcCcchhh
Confidence 2221 23344333 2235566552 22344577777776655544
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.92 E-value=0.0018 Score=71.95 Aligned_cols=258 Identities=12% Similarity=0.081 Sum_probs=141.6
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCEEEEe--cCChHHHHHhhcCCceEEEecChhhH-------------
Q 012052 26 VGINYGRVA---NNLPSPEKV---VELLKSQRIDRVKTY--DTDSAVLAALANSDISVVVAFPNEEL------------- 84 (472)
Q Consensus 26 ~GvnYg~~~---~n~ps~~~v---~~ll~s~~~~~VRlY--~~d~~vL~A~~~tgi~V~lGv~n~~l------------- 84 (472)
.|+|+-.-. ...++.+.. +++||..|++.||+- -.++..+.++-..||-|+.=++....
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 477763221 113454444 457889999999993 23578999999999999865532100
Q ss_pred --HHhh------hChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecc
Q 012052 85 --SKAA------ADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSP 156 (472)
Q Consensus 85 --~~la------~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~ 156 (472)
.... .......+-+++.|..+.-.-.|..=.+|||.-... ......++.+.+.+++..-++ +|+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR--~vt~~ 448 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTR--PVTCV 448 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCC--ceEEE
Confidence 0000 011222334566676664444588899999964321 113344455555555544332 34544
Q ss_pred cccccccccCCCCCcccccccchhhhhhHHHHHHhcCCccccccCCccccccCCCccccccccccCCCCcccCCCCcccc
Q 012052 157 IALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYT 236 (472)
Q Consensus 157 ~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~~y~ 236 (472)
..+. . .|. . ..+.+++|++ ..|.|+=|-. +..+ .+ ...
T Consensus 449 ~~~~---~--~~~-----~----~~~~~~~Dv~-------~~N~Y~~wy~--~~~~----~~---------------~~~ 486 (604)
T PRK10150 449 NVMF---A--TPD-----T----DTVSDLVDVL-------CLNRYYGWYV--DSGD----LE---------------TAE 486 (604)
T ss_pred eccc---C--Ccc-----c----ccccCcccEE-------EEcccceecC--CCCC----HH---------------HHH
Confidence 3110 0 010 0 1134456766 8888753221 1100 00 001
Q ss_pred chHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEE
Q 012052 237 NLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDEN---EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLF 313 (472)
Q Consensus 237 n~fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~---~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F 313 (472)
..|+..++.. .++ + ++|++|+|.|+.+.-+.. ...-+.+.|..|++...+.+.+ +|. -+-.|+.
T Consensus 487 ~~~~~~~~~~---~~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 487 KVLEKELLAW---QEK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHHHHH---HHh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 1233333222 111 2 799999999976632211 1125788888888877776653 232 3458999
Q ss_pred EecCCCCCCCC--CCCccccccCCCCCeeeeec
Q 012052 314 ALFNENQKPGP--TSERNYGLFYPNEQTVYDSP 344 (472)
Q Consensus 314 ~~FDE~~K~g~--~~E~~wGlf~~d~~~ky~~~ 344 (472)
.+||-....|. ....+.||++.||+||-..-
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~ 586 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKSAAF 586 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChHHHH
Confidence 99996554331 12247899999999996543
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.81 E-value=0.0026 Score=62.47 Aligned_cols=128 Identities=14% Similarity=0.165 Sum_probs=80.0
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------C-------hHHHHHhhcCCceEEEecChh-h
Q 012052 25 KVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDT-------------D-------SAVLAALANSDISVVVAFPNE-E 83 (472)
Q Consensus 25 ~~GvnYg~~~~n~ps~~~v~~ll~s~~~~~VRlY~~-------------d-------~~vL~A~~~tgi~V~lGv~n~-~ 83 (472)
..|+|-. ..+.. ..++.++.|++.|++.|||.-. + ..+|++++..||.|+|.+... .
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3466654 22112 7788899999999999999721 1 257788899999999987542 0
Q ss_pred H---HHhhhChHHHHHHHHH---hhh-hcCCCceEEEEEeccccccCCCCC-----hhh-HHHHHHHHHHHHHhCCCCCC
Q 012052 84 L---SKAAADQSFTDNWVQA---NIS-KYYPATKIEAVAVGNEVFADPKNT-----TPF-LVPAMKNVYNSLVKYKLDSN 150 (472)
Q Consensus 84 l---~~la~~~~~a~~wv~~---~v~-~~~p~~~I~~I~VGNE~l~~~~~~-----~~~-L~~am~nv~~aL~~~gl~~~ 150 (472)
. ...........+|+++ .|. .|.....|.++=+.||+....... ... +...++.+.+++|+.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 0 0011122223344333 233 332345578999999998864321 124 88899999999999987643
Q ss_pred eEEe
Q 012052 151 VKVS 154 (472)
Q Consensus 151 IkVs 154 (472)
|-|.
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4333
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.36 E-value=0.014 Score=57.73 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCC
Q 012052 246 VFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGP 324 (472)
Q Consensus 246 v~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE-~~K~g~ 324 (472)
+...|++++--+++|+|||.+-|..+ +.+.|+.|++.+++.+.+. |. ..-+++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCC-
Confidence 33444444444799999999988753 3488899999999998752 22 233566666664 36543
Q ss_pred CCCccccccCCCCCeeee
Q 012052 325 TSERNYGLFYPNEQTVYD 342 (472)
Q Consensus 325 ~~E~~wGlf~~d~~~ky~ 342 (472)
.+-|||+.|++||-.
T Consensus 236 ---~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 ---GAPLLFDANYQPKPA 250 (254)
T ss_pred ---CCceeECCCCCCChh
Confidence 467999999988843
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.83 E-value=0.056 Score=53.18 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=46.3
Q ss_pred ceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCCCCCCCccccccCCCC
Q 012052 258 VKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPTSERNYGLFYPNE 337 (472)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~~K~g~~~E~~wGlf~~d~ 337 (472)
+||+|||.|+...+. ..+.++++.|.+..+..+.+. +. --.++||. |...+. ....+-.|++.||
T Consensus 166 kPIWITEf~~~~~~~----~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G 230 (239)
T PF11790_consen 166 KPIWITEFGCWNGGS----QGSDEQQASFLRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNPNSALLDADG 230 (239)
T ss_pred CCEEEEeecccCCCC----CCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecc-cccccC---CCccccccccCCC
Confidence 999999999877322 388899999999999999742 22 34578888 322222 3455666777776
Q ss_pred C
Q 012052 338 Q 338 (472)
Q Consensus 338 ~ 338 (472)
+
T Consensus 231 ~ 231 (239)
T PF11790_consen 231 S 231 (239)
T ss_pred C
Confidence 4
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=91.25 E-value=1.5 Score=44.11 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=57.0
Q ss_pred ceeEEecCCCC---CCCCHHHHH---HHHHhCCCCEEEEec--CChHHHHHhhcCCceEEEecChhh---HHH------h
Q 012052 25 KVGINYGRVAN---NLPSPEKVV---ELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNEE---LSK------A 87 (472)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v~---~ll~s~~~~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~---l~~------l 87 (472)
..|||+..... ...+.+.+. ++||..|++.||+.. .++..+.++...||-|+..++... ... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 46999877533 245666654 577889999999963 358999999999999998876410 000 0
Q ss_pred hhCh---HHHHHHHHHhhhhcCCCceEEEEEecccc
Q 012052 88 AADQ---SFTDNWVQANISKYYPATKIEAVAVGNEV 120 (472)
Q Consensus 88 a~~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNE~ 120 (472)
..++ +...+.+++.|..+.-.-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1122 23445666777766433347788899998
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=89.00 E-value=7.6 Score=46.22 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=59.8
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHhhcCCceEEEecChh--h------HHHhh
Q 012052 25 KVGINYGRVAN---NLPSPEKV---VELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNE--E------LSKAA 88 (472)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v---~~ll~s~~~~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~--~------l~~la 88 (472)
..|+|+-.... ...+.+++ +++||+.|++.||+-. .++..+.++-..||-|+--++.+ . ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 35888644322 23455555 4578889999999863 24688999999999988754211 0 00111
Q ss_pred hCh---HHHHHHHHHhhhhcCCCceEEEEEecccccc
Q 012052 89 ADQ---SFTDNWVQANISKYYPATKIEAVAVGNEVFA 122 (472)
Q Consensus 89 ~~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~ 122 (472)
.++ .+..+.+++.|....-.-.|..=++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 222 1223445666666543445788888999743
No 14
>PRK09936 hypothetical protein; Provisional
Probab=88.71 E-value=11 Score=38.33 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=73.9
Q ss_pred CceeEEecCCCCC-CCCHHHHHHHHH---hCCCCEEEEe-----cCC--------hHHHHHhhcCCceEEEecChhh--H
Q 012052 24 GKVGINYGRVANN-LPSPEKVVELLK---SQRIDRVKTY-----DTD--------SAVLAALANSDISVVVAFPNEE--L 84 (472)
Q Consensus 24 ~~~GvnYg~~~~n-~ps~~~v~~ll~---s~~~~~VRlY-----~~d--------~~vL~A~~~tgi~V~lGv~n~~--l 84 (472)
+..|+=|-|...| --++++-.++++ ..|++.+=+= +.| ...|+++...||+|.||++-|. -
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~ 99 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFF 99 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHH
Confidence 3467779999877 568888776554 5788765442 223 4788898999999999998642 2
Q ss_pred HHhhhChHHHHHHHHHhhhhc---------CCCceEEEEEeccccc-cCC-CCChhh-HHHHHHHHHHHHHhCCCCCCeE
Q 012052 85 SKAAADQSFTDNWVQANISKY---------YPATKIEAVAVGNEVF-ADP-KNTTPF-LVPAMKNVYNSLVKYKLDSNVK 152 (472)
Q Consensus 85 ~~la~~~~~a~~wv~~~v~~~---------~p~~~I~~I~VGNE~l-~~~-~~~~~~-L~~am~nv~~aL~~~gl~~~Ik 152 (472)
..+..|.+.-++|++.....- .+...+++--.-=|+= +.. +...-. |+..++++.+.|.+.+ ++|-
T Consensus 100 q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~--kPv~ 177 (296)
T PRK09936 100 MHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSA--KPVH 177 (296)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCC--CCeE
Confidence 333334333344555432111 1233344333333442 121 111223 7778888877765322 3455
Q ss_pred Eeccc
Q 012052 153 VSSPI 157 (472)
Q Consensus 153 VsT~~ 157 (472)
||+-.
T Consensus 178 ISay~ 182 (296)
T PRK09936 178 ISAFF 182 (296)
T ss_pred EEeec
Confidence 55543
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=84.18 E-value=0.48 Score=50.98 Aligned_cols=73 Identities=12% Similarity=0.287 Sum_probs=39.3
Q ss_pred CCCceEEEeeecCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcc
Q 012052 255 YNDVKVVVTETGWPSVGDENEAG----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERN 329 (472)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~----as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~~ 329 (472)
|+++||+|||.|++......... --++--+.+++.+.+.+. .|-+. .-+|..++.|-- |.. +..+.
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V-----~GY~~WSl~Dn~Ew~~--Gy~~r 423 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV-----RGYFAWSLLDNFEWAE--GYKKR 423 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE-----EEEEEETSB---BGGG--GGGSE
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe-----eeEeeecccccccccc--CccCc
Confidence 67899999999998876532200 112223444444445443 45443 347888888854 443 48899
Q ss_pred ccccCCC
Q 012052 330 YGLFYPN 336 (472)
Q Consensus 330 wGlf~~d 336 (472)
|||++.|
T Consensus 424 fGl~~VD 430 (455)
T PF00232_consen 424 FGLVYVD 430 (455)
T ss_dssp --SEEEE
T ss_pred cCceEEc
Confidence 9999999
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=81.91 E-value=5.4 Score=41.65 Aligned_cols=95 Identities=11% Similarity=0.249 Sum_probs=57.4
Q ss_pred CCCEEEEecC-ChHHHHHhhcCCceEEEecChhhHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChh
Q 012052 51 RIDRVKTYDT-DSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTP 129 (472)
Q Consensus 51 ~~~~VRlY~~-d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~ 129 (472)
.+++|-+|+. |++++..+...|++|++..... .+ ...+++.-..++++.| .+...-.+.+|-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4788888854 7899999999999999864321 12 2234444444555433 22222235566554443322111223
Q ss_pred h-HHHHHHHHHHHHHhCCCC
Q 012052 130 F-LVPAMKNVYNSLVKYKLD 148 (472)
Q Consensus 130 ~-L~~am~nv~~aL~~~gl~ 148 (472)
. ++..|+++|++|++.+..
T Consensus 132 ~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 132 YALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 3 889999999999987643
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=75.59 E-value=12 Score=39.16 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCCEEEEecC-------C---------hHHHHHhhcCCceEEEecChhhHH--------H----------
Q 012052 41 EKVVELLKSQRIDRVKTYDT-------D---------SAVLAALANSDISVVVAFPNEELS--------K---------- 86 (472)
Q Consensus 41 ~~v~~ll~s~~~~~VRlY~~-------d---------~~vL~A~~~tgi~V~lGv~n~~l~--------~---------- 86 (472)
++.++++|..|++.|||... . -.+|..++..||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 44567788889999998422 1 367888899999999998532100 0
Q ss_pred --------hhhC----hHHHHHHHHHhhhhcCCCceEEEEEecccccc
Q 012052 87 --------AAAD----QSFTDNWVQANISKYYPATKIEAVAVGNEVFA 122 (472)
Q Consensus 87 --------la~~----~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~ 122 (472)
..-+ ...+.+.+++.+..|-..-.|.++.|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0000 12345555555556654457999999999866
No 18
>TIGR03356 BGL beta-galactosidase.
Probab=75.23 E-value=8.5 Score=41.22 Aligned_cols=77 Identities=16% Similarity=0.302 Sum_probs=45.4
Q ss_pred CCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcccc
Q 012052 255 YNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLS--GSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNYG 331 (472)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~s--~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~~wG 331 (472)
|++.||+|||.|+..........-.-+.-..|++.-++.+.. ..|-+.| -++.-++.|-- |..| .++.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~-----GY~~Wsl~Dn~ew~~g--y~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVR-----GYFVWSLLDNFEWAEG--YSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEE-----EEEecccccccchhcc--cccccc
Confidence 555689999999975431110001112233355444443332 2466543 37888888853 6544 899999
Q ss_pred ccCCCCC
Q 012052 332 LFYPNEQ 338 (472)
Q Consensus 332 lf~~d~~ 338 (472)
|++.|..
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9999876
No 19
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=70.51 E-value=11 Score=40.98 Aligned_cols=75 Identities=19% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCC-ceEEEeeecCCCCCCCC--CC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCC
Q 012052 255 YND-VKVVVTETGWPSVGDEN--EA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSE 327 (472)
Q Consensus 255 ~~~-~~vvVtETGWPS~G~~~--~~---~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE-~~K~g~~~E 327 (472)
|++ .||+|||.|+....... +. .-=++--+.+++.+.+.+. .|.+.| -+|.-+++|- .|..| .+
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~DnfEW~~G--y~ 435 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAIS--DGANVK-----GYFIWSLMDVFSWSNG--YE 435 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeecccccccchhcC--cc
Confidence 555 57999999997442211 00 0112223344444444442 466543 3888888885 36554 89
Q ss_pred ccccccCCCCC
Q 012052 328 RNYGLFYPNEQ 338 (472)
Q Consensus 328 ~~wGlf~~d~~ 338 (472)
+.|||++.|.+
T Consensus 436 ~RfGl~~VD~~ 446 (469)
T PRK13511 436 KRYGLFYVDFE 446 (469)
T ss_pred CccceEEECCC
Confidence 99999998875
No 20
>PLN02814 beta-glucosidase
Probab=61.22 E-value=13 Score=40.86 Aligned_cols=75 Identities=20% Similarity=0.443 Sum_probs=45.1
Q ss_pred CCCceEEEeeecCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 012052 255 YNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (472)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE-~~K~g~~~E~~wGl 332 (472)
|++.||+|||-|+....+.. ...-=++--+.+++.+.+.+. .|.|.| -+|.-++.|- .|..| .++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V~-----GY~~WSllDnfEW~~G--y~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDTR-----GYFVWSMIDLYELLGG--YTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhcc--ccCccce
Confidence 55668999999997542110 001122333344444444442 466543 3788888883 26554 8999999
Q ss_pred cCCCCC
Q 012052 333 FYPNEQ 338 (472)
Q Consensus 333 f~~d~~ 338 (472)
++.|..
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 998765
No 21
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=61.03 E-value=10 Score=35.29 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecC
Q 012052 41 EKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (472)
Q Consensus 41 ~~v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (472)
.--+|.|+.+|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 129 gigaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 129 GIGAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 3346899999999999999999999999999999975443
No 22
>PLN03059 beta-galactosidase; Provisional
Probab=60.84 E-value=1.7e+02 Score=34.34 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=90.7
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCceeEEecCCC---C-----------C--CCCHHHH---HHHHHhCCCCEEEEecC---
Q 012052 3 TLAAFSSFFFFFLVTFAFADTGKVGINYGRVA---N-----------N--LPSPEKV---VELLKSQRIDRVKTYDT--- 60 (472)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~---~-----------n--~ps~~~v---~~ll~s~~~~~VRlY~~--- 60 (472)
+|.-|+|++||+||+.+........|.|+.+. + + -.+|+.. ++.+|..|++.|-+|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~ 84 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG 84 (840)
T ss_pred ceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 45566666666666665554445578887541 1 1 2345554 44567789999999831
Q ss_pred --------C-------hHHHHHhhcCCceEEEec-------------ChhhH--HH--hh-hCh---HHHHHHHHHhhhh
Q 012052 61 --------D-------SAVLAALANSDISVVVAF-------------PNEEL--SK--AA-ADQ---SFTDNWVQANISK 104 (472)
Q Consensus 61 --------d-------~~vL~A~~~tgi~V~lGv-------------~n~~l--~~--la-~~~---~~a~~wv~~~v~~ 104 (472)
| ...|+.+++.||.|+|=. |.-.+ +. +- .++ .+.++|+...+..
T Consensus 85 HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~ 164 (840)
T PLN03059 85 HEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDM 164 (840)
T ss_pred cCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 1 346788889999999843 11100 10 11 111 2456676654432
Q ss_pred c------C-CCceEEEEEeccccccCCCCCh-hhHHHHHHHHHHHHHhCCCCCCeEEecccc
Q 012052 105 Y------Y-PATKIEAVAVGNEVFADPKNTT-PFLVPAMKNVYNSLVKYKLDSNVKVSSPIA 158 (472)
Q Consensus 105 ~------~-p~~~I~~I~VGNE~l~~~~~~~-~~L~~am~nv~~aL~~~gl~~~IkVsT~~~ 158 (472)
. + .+..|..+=|-||-=.- .... ..--.||+.+++.+++.|+. |+.-|.+.
T Consensus 165 l~~~~l~~~~GGPIImvQIENEYGs~-~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t~dg 223 (840)
T PLN03059 165 MKSEKLFEPQGGPIILSQIENEYGPV-EWEIGAPGKAYTKWAADMAVKLGTG--VPWVMCKQ 223 (840)
T ss_pred HhhcceeecCCCcEEEEEecccccce-ecccCcchHHHHHHHHHHHHHcCCC--cceEECCC
Confidence 1 1 23579999999995221 0011 11357999999999999985 66666654
No 23
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=60.48 E-value=28 Score=26.68 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCceEEEecC
Q 012052 37 LPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVAFP 80 (472)
Q Consensus 37 ~ps~~~v~~ll~s~~~~~VRlY~~d-----~~vL~A~~~tgi~V~lGv~ 80 (472)
.-+++++++.++.+|++.|=+=|-+ ....+.++..||+|+.|+.
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 3468899999999999999887766 4556667789999999985
No 24
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=54.04 E-value=19 Score=34.18 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=30.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEE
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (472)
+|.|+.+|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999987
No 25
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.97 E-value=49 Score=34.78 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEE
Q 012052 235 YTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDENE---AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVY 311 (472)
Q Consensus 235 y~n~fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y 311 (472)
|.|-|++-+-....-..-.|.+.++|+.+ |||.|.--+ .-.|.+.++.-+.++++.+....+ ..++|
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~-------~~~I~ 194 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKP-------VKRIY 194 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCC-------CceEE
Confidence 66777765544444455567888999887 999998631 126666667777788888875322 23566
Q ss_pred EEE
Q 012052 312 LFA 314 (472)
Q Consensus 312 ~F~ 314 (472)
+++
T Consensus 195 ilA 197 (377)
T COG4782 195 LLA 197 (377)
T ss_pred EEE
Confidence 665
No 26
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.02 E-value=20 Score=34.22 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=30.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEE
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (472)
+|.|+.+|+++||+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999997
No 27
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=51.91 E-value=49 Score=34.13 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=42.0
Q ss_pred cCCceEEEecC--h---hhHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccC--CCCChhh-HHHHHHHHHHH
Q 012052 70 NSDISVVVAFP--N---EELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFAD--PKNTTPF-LVPAMKNVYNS 141 (472)
Q Consensus 70 ~tgi~V~lGv~--n---~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~--~~~~~~~-L~~am~nv~~a 141 (472)
+.++||++.|. + +....++++.......++..| .+...-.+.+|-+==|-... ....... ++..|+++|++
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~ 146 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREA 146 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 46899998883 2 134556666554444444332 22222234555553333221 1112233 88999999999
Q ss_pred HHhCC
Q 012052 142 LVKYK 146 (472)
Q Consensus 142 L~~~g 146 (472)
|++.+
T Consensus 147 l~~~~ 151 (362)
T cd02872 147 FEPEA 151 (362)
T ss_pred HHhhC
Confidence 99873
No 28
>PLN03030 cationic peroxidase; Provisional
Probab=51.78 E-value=12 Score=38.82 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHhhhcCCCceeEEecCCCCCCCCHHHHHH
Q 012052 6 AFSSFFFFFLVTFAFADTGKVGINYGRVANNLPSPEKVVE 45 (472)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~ps~~~v~~ 45 (472)
+|.+.+|+||+++.+.....-+..|+-|...||..++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~ 42 (324)
T PLN03030 3 RFIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVR 42 (324)
T ss_pred eehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHH
Confidence 4666777777766655555566888889999999999874
No 29
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=47.04 E-value=1.1e+02 Score=30.33 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhhhcCCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecChhhHHH
Q 012052 7 FSSFFFFFLVTFAFADTGKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSK 86 (472)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~ps~~~v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~ 86 (472)
+.+++|+++++++++.... |. +=.-.-+.|++.+|.++|++.-|.=+ +..|.. |-|...
T Consensus 6 ~~l~~l~l~l~L~gCk~~L----y~--gL~e~eANemlAlL~~~gI~A~K~~~---------~~g~~~--l~Ve~~---- 64 (246)
T COG4669 6 KYLFLLLLILLLTGCKVDL----YT--GLSEKEANEMLALLMSHGINAEKKAD---------KDGGTS--LLVEES---- 64 (246)
T ss_pred HHHHHHHHHHHHhcchHHH----Hc--CCCHhHHHHHHHHHHHcCCcceeecc---------CCCceE--EEEcHH----
Confidence 4556666555555553211 11 11233578899999999998888722 223333 555543
Q ss_pred hhhChHHHHHHHHHhhhhcCCCceEE
Q 012052 87 AAADQSFTDNWVQANISKYYPATKIE 112 (472)
Q Consensus 87 la~~~~~a~~wv~~~v~~~~p~~~I~ 112 (472)
+..+|.+|++.+=.|.-+.+++.
T Consensus 65 ---~fa~Av~iL~~~GlPr~~f~~l~ 87 (246)
T COG4669 65 ---DFAEAVEILNQNGLPRKKFTTLG 87 (246)
T ss_pred ---HHHHHHHHHHhcCCCCCCCCcHH
Confidence 23468899999876654444443
No 30
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=45.59 E-value=1.8e+02 Score=27.66 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcc
Q 012052 93 FTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGS 172 (472)
Q Consensus 93 ~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~ 172 (472)
...+|+.+.+..+ +...+....+= ....-.+++.+.+.+...|+.+ |++.+..... .|
T Consensus 56 ~~n~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~~------~~---- 113 (273)
T PF04909_consen 56 GFNDWLVELAAKH-PDRFIGFAAIP----------PPDPEDAVEELERALQELGFRG-VKLHPDLGGF------DP---- 113 (273)
T ss_dssp HHHHHHHHHHHHS-TTTEEEEEEET----------TTSHHHHHHHHHHHHHTTTESE-EEEESSETTC------CT----
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEec----------CCCchhHHHHHHHhccccceee-eEecCCCCcc------cc----
Confidence 4456776666665 33333333321 0113468888889998999887 8877643211 11
Q ss_pred cccccchhhhh-hHHHHHHhcCCccccccC-CccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHH
Q 012052 173 FKSDLIEPALK-PMLEFLRKTSSYLMVNAY-PFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAM 250 (472)
Q Consensus 173 F~~~~~~~~l~-~~ldfL~~~~sp~~vNiy-Pyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~~y~n~fda~~dav~~A~ 250 (472)
+ ++.+. ++++.+.+.+-|+.+++- +.+... ..-..+...+...+
T Consensus 114 ---~--~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~-----------------------------~~~~~~~~~~~~~~ 159 (273)
T PF04909_consen 114 ---D--DPRLDDPIFEAAEELGLPVLIHTGMTGFPDA-----------------------------PSDPADPEELEELL 159 (273)
T ss_dssp ---T--SGHCHHHHHHHHHHHT-EEEEEESHTHHHHH-----------------------------HHHHHHHHHHTTHH
T ss_pred ---c--cHHHHHHHHHHHHhhccceeeeccccchhhh-----------------------------hHHHHHHHHHHHHH
Confidence 1 12344 899999999988887743 111100 01112222233334
Q ss_pred HHcCCCCceEEEeeecCC
Q 012052 251 SAISYNDVKVVVTETGWP 268 (472)
Q Consensus 251 ~k~g~~~~~vvVtETGWP 268 (472)
++ +++++|++.+.|+|
T Consensus 160 ~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 160 ER--FPDLRIILAHLGGP 175 (273)
T ss_dssp HH--STTSEEEESGGGTT
T ss_pred HH--hcCCeEEEecCccc
Confidence 44 79999999999999
No 31
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.48 E-value=26 Score=36.93 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.0
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCceEE
Q 012052 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (472)
Q Consensus 43 v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (472)
-+|+|+.+|+++|||. .+|.-+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3689999999999999 78888999999999986
No 32
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=43.96 E-value=34 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEE
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (472)
+|.|+.+|++++|+.+..+.-+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999988878889999999997
No 33
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=43.73 E-value=1.1e+02 Score=36.60 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=60.2
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHhhcCCceEEEecChhh-----HHHhhhCh
Q 012052 25 KVGINYGRVAN---NLPSPEKV---VELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNEE-----LSKAAADQ 91 (472)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v---~~ll~s~~~~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~-----l~~la~~~ 91 (472)
..|+|+-.... ...+++++ ++++|..|++.||+-. .++..+..+-..||=|+--++.+. ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35888754322 24566665 4577889999999953 357899999999999887654210 00111222
Q ss_pred ---HHHHHHHHHhhhhcCCCceEEEEEeccccc
Q 012052 92 ---SFTDNWVQANISKYYPATKIEAVAVGNEVF 121 (472)
Q Consensus 92 ---~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l 121 (472)
.+..+-+++.|....-.-.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 123334555666554344588889999964
No 34
>PLN02998 beta-glucosidase
Probab=42.95 E-value=51 Score=36.12 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=45.7
Q ss_pred CCCceEEEeeecCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 012052 255 YNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (472)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~-~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE-~~K~g~~~E~~wGl 332 (472)
|++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|.+.+ -+|.-++.|- .|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V~-----GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDVK-----GYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhcc--ccCccce
Confidence 55558999999997653110 001222333444555555543 466543 3788888883 26554 8999999
Q ss_pred cCCCCC
Q 012052 333 FYPNEQ 338 (472)
Q Consensus 333 f~~d~~ 338 (472)
++.|..
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 998765
No 35
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=42.03 E-value=2.1e+02 Score=28.75 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-------hHHHHH---hhcCCceEEEecChh---hHHHhhhChHHHHHHHHHhh
Q 012052 36 NLPSPEKVVELLKSQRIDRVKTYDTD-------SAVLAA---LANSDISVVVAFPNE---ELSKAAADQSFTDNWVQANI 102 (472)
Q Consensus 36 n~ps~~~v~~ll~s~~~~~VRlY~~d-------~~vL~A---~~~tgi~V~lGv~n~---~l~~la~~~~~a~~wv~~~v 102 (472)
+.+++.++.+.|+..|+++|-+-.+. ..+++. ++..--++.+|-|-= ....-..+.....+-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 57999999999999999999998775 234443 334445889997620 00001112222222233322
Q ss_pred hhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhh
Q 012052 103 SKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPAL 182 (472)
Q Consensus 103 ~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l 182 (472)
..-.++..+..+-=||+- ... ..-..++..|++.|+.+ |-|+|.+. +| .+
T Consensus 136 ~~~~~~~a~vlmGHGt~h-------~an--~~Y~~l~~~l~~~~~~~-v~vgtvEG-------~P-------------~~ 185 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH-------PAN--AAYSALQAMLKKHGYPN-VFVGTVEG-------YP-------------SL 185 (262)
T ss_dssp -TT-TTEEEEEEE---SC-------HHH--HHHHHHHHHHHCCT-TT-EEEEETTS-------SS-------------BH
T ss_pred cccCCCCEEEEEeCCCCC-------Ccc--HHHHHHHHHHHhCCCCe-EEEEEeCC-------CC-------------CH
Confidence 211133444444445532 122 23344567788888764 88999863 32 24
Q ss_pred hhHHHHHHhcCCccccccCCcccccc
Q 012052 183 KPMLEFLRKTSSYLMVNAYPFFAYSA 208 (472)
Q Consensus 183 ~~~ldfL~~~~sp~~vNiyPyf~~~~ 208 (472)
..++..|.+.+ +=-|.+.||.--..
T Consensus 186 ~~vi~~L~~~g-~k~V~L~PlMlVAG 210 (262)
T PF06180_consen 186 EDVIARLKKKG-IKKVHLIPLMLVAG 210 (262)
T ss_dssp HHHHHHHHHHT--SEEEEEEESSS--
T ss_pred HHHHHHHHhcC-CCeEEEEecccccc
Confidence 55666776544 22488889886443
No 36
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.25 E-value=31 Score=36.30 Aligned_cols=32 Identities=6% Similarity=0.299 Sum_probs=30.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEE
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (472)
+|+|+.+|+++|||.. +|.-+.++.+.||+|.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 6899999999999999 8999999999999997
No 37
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=40.86 E-value=54 Score=35.69 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=43.1
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcccc
Q 012052 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNYG 331 (472)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~~wG 331 (472)
+||+|+|-|..........+ -=++--+.+++.+.+.+. ..|-+.+ -+|.-++.|-- |..| ..++.||
T Consensus 368 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~-~dGv~V~-----GY~~WSl~Dn~Ew~~G-~y~~RfG 440 (476)
T PRK09589 368 LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVV-EDGVDLM-----GYTPWGCIDLVSAGTG-EMKKRYG 440 (476)
T ss_pred CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHH-hcCCCeE-----EEeeccccccccccCC-cccccee
Confidence 58999999997543211001 112222334444444431 2466543 37888888842 6543 3789999
Q ss_pred ccCCCCC
Q 012052 332 LFYPNEQ 338 (472)
Q Consensus 332 lf~~d~~ 338 (472)
|++.|..
T Consensus 441 lv~VD~~ 447 (476)
T PRK09589 441 FIYVDKD 447 (476)
T ss_pred eEEEcCC
Confidence 9998876
No 38
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.29 E-value=70 Score=32.31 Aligned_cols=82 Identities=9% Similarity=0.066 Sum_probs=50.4
Q ss_pred hHHHHHhhcCCceEEEecChh--------hHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HH
Q 012052 62 SAVLAALANSDISVVVAFPNE--------ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LV 132 (472)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~--------~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~-L~ 132 (472)
+.++.+++..++||++.|.+. ....+.+++..-...+ ++|..+...-.+.+|-+-=|.+.. .... .+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 678888888899999888542 2345555544333333 333333222235566665455432 2233 88
Q ss_pred HHHHHHHHHHHhCCC
Q 012052 133 PAMKNVYNSLVKYKL 147 (472)
Q Consensus 133 ~am~nv~~aL~~~gl 147 (472)
..|+.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987764
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=39.85 E-value=45 Score=36.37 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=44.3
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcccc
Q 012052 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNYG 331 (472)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~~wG 331 (472)
+||+|+|-|..........+ -=++--+.+++.+.+.+. ..|.+.| -+|.-++.|-- |..| ..++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v~-----GY~~WSl~Dn~EW~~G-~y~~RfG 441 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVELL-----GYTTWGCIDLVSAGTG-EMKKRYG 441 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchHhhcccCC-CccCeec
Confidence 58999999987644221000 123333444444444442 2466543 37888888742 6554 4789999
Q ss_pred ccCCCCC
Q 012052 332 LFYPNEQ 338 (472)
Q Consensus 332 lf~~d~~ 338 (472)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9998865
No 40
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=39.37 E-value=1.2e+02 Score=32.22 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCC
Q 012052 131 LVPAMKNVYNSLVKYKL 147 (472)
Q Consensus 131 L~~am~nv~~aL~~~gl 147 (472)
++..|+.+|++|++.++
T Consensus 171 f~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 171 FTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 88899999999988765
No 41
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=38.97 E-value=52 Score=36.20 Aligned_cols=75 Identities=15% Similarity=0.338 Sum_probs=51.2
Q ss_pred CCCCceEEEeeecCCCCCCCC---C----CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCC
Q 012052 254 SYNDVKVVVTETGWPSVGDEN---E----AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPT 325 (472)
Q Consensus 254 g~~~~~vvVtETGWPS~G~~~---~----~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~ 325 (472)
.|++.+|.|+|-|-+...+.. + ...=++..+.|++.+.+.+.. .|.- ..-+|..+|-|-- |..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC--
Confidence 488999999999988864431 1 124455667777777776652 3442 2348999999854 6665
Q ss_pred CCccccccCCC
Q 012052 326 SERNYGLFYPN 336 (472)
Q Consensus 326 ~E~~wGlf~~d 336 (472)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 66889999864
No 42
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=37.99 E-value=1.8e+02 Score=26.96 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=42.1
Q ss_pred hHHHHHhhcCCceEEEecChh-hHHHhhhChHHHH---HHHHHhh-hhcCCCceEEEEEeccccccCCCCChhhHHHHHH
Q 012052 62 SAVLAALANSDISVVVAFPNE-ELSKAAADQSFTD---NWVQANI-SKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMK 136 (472)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~-~l~~la~~~~~a~---~wv~~~v-~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~ 136 (472)
..+|+++...||+|.||++.+ .--. ..+.+... .-|.+-+ ..|.....+.+--+-.|+=... ....++.+
T Consensus 68 ~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~ 142 (166)
T PF14488_consen 68 EMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFA 142 (166)
T ss_pred HHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHH
Confidence 367889999999999999743 1000 01211110 1122222 2343233577777777774432 22455566
Q ss_pred HHHHHHHhC
Q 012052 137 NVYNSLVKY 145 (472)
Q Consensus 137 nv~~aL~~~ 145 (472)
.+.+.|++.
T Consensus 143 ~l~~~lk~~ 151 (166)
T PF14488_consen 143 LLGKYLKQI 151 (166)
T ss_pred HHHHHHHHh
Confidence 666666554
No 43
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=37.48 E-value=82 Score=32.61 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHhhcCCceEEEecChhhHHHhhhChHHHHHHHHHhhhhcC-----CCceEEEEEeccccccCC---CCChhhHHHHH
Q 012052 64 VLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYY-----PATKIEAVAVGNEVFADP---KNTTPFLVPAM 135 (472)
Q Consensus 64 vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~-----p~~~I~~I~VGNE~l~~~---~~~~~~L~~am 135 (472)
+.+-+..+|++|+.|+.--.-..........-.|=-+|...++ ..-+|.+-=.|||.-..+ ..+..++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 3444568999999999520000000011234567777755442 123577788899975432 12223377777
Q ss_pred HHHHHHHHh
Q 012052 136 KNVYNSLVK 144 (472)
Q Consensus 136 ~nv~~aL~~ 144 (472)
..+|+.|+.
T Consensus 194 ~~Lr~il~~ 202 (319)
T PF03662_consen 194 IQLRKILNE 202 (319)
T ss_dssp ---HHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 44
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=36.71 E-value=1.1e+02 Score=29.90 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 012052 236 TNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDENE---AGAGAANAAAYNGNLVRRVLS 296 (472)
Q Consensus 236 ~n~fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~na~~y~~~li~~~~s 296 (472)
.+-|+..+.....-...+++++..|+. .|||.|...+ ...+...++..+..+++.+..
T Consensus 28 n~~f~~a~~r~aql~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 28 NNSFEDALRRAAQLAHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 333443333332233456777755555 5999997532 224555556666667777654
No 45
>PLN02849 beta-glucosidase
Probab=36.61 E-value=1.1e+02 Score=33.49 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=45.5
Q ss_pred CCCceEEEeeecCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCccc
Q 012052 255 YNDVKVVVTETGWPSVGDENEA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNY 330 (472)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~---~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~~w 330 (472)
|++.||+|+|-|++......+. .-=++--+.+++.+.+.+. .|.+.+ -+|..++.|-- |..| .++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V~-----GY~~WSl~DnfEW~~G--y~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDTR-----GYFVWSFMDLYELLKG--YEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhcc--ccCcc
Confidence 5556899999999865421110 0122333444444444442 466543 37888888842 5444 89999
Q ss_pred cccCCCCC
Q 012052 331 GLFYPNEQ 338 (472)
Q Consensus 331 Glf~~d~~ 338 (472)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99998765
No 46
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.58 E-value=44 Score=34.81 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-hHHHHHhhcCCceEE
Q 012052 38 PSPEKVVELLKSQRIDRVKTYDTD-SAVLAALANSDISVV 76 (472)
Q Consensus 38 ps~~~v~~ll~s~~~~~VRlY~~d-~~vL~A~~~tgi~V~ 76 (472)
-...-..|+|+.+|+++||+...+ +.-+.++.+.||+|.
T Consensus 295 RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 295 KDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred cchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 334444789999999999999998 888899999999986
No 47
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.76 E-value=49 Score=35.12 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecC
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (472)
.|+|+..|+++||+...++.-+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999999999999999974443
No 48
>PRK08815 GTP cyclohydrolase; Provisional
Probab=35.58 E-value=49 Score=34.97 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecC
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (472)
.|+|+..|+++||+...++.-+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888999999999974343
No 49
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=35.32 E-value=99 Score=33.59 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCC-ceEEEeeecCCCCCCCC-CC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCc
Q 012052 255 YND-VKVVVTETGWPSVGDEN-EA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSER 328 (472)
Q Consensus 255 ~~~-~~vvVtETGWPS~G~~~-~~---~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~ 328 (472)
|+. .+|+|+|-|........ +. .-=++--+.|++.+.+.+. .|-+.| -+|.-++.|-- |.. +.++
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~Dn~Ew~~--Gy~~ 434 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIA--DGANVK-----GYFIWSLMDVFSWSN--GYEK 434 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhc--cccC
Confidence 444 46999999998643211 00 0122333444444444443 465543 36777777732 544 4899
Q ss_pred cccccCCCCC
Q 012052 329 NYGLFYPNEQ 338 (472)
Q Consensus 329 ~wGlf~~d~~ 338 (472)
.|||++.|..
T Consensus 435 RfGLv~VD~~ 444 (467)
T TIGR01233 435 RYGLFYVDFD 444 (467)
T ss_pred ccceEEECCC
Confidence 9999999876
No 50
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.68 E-value=53 Score=35.08 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCceEE
Q 012052 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (472)
Q Consensus 43 v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~ 76 (472)
..++|+..|+++||+...++.-+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3789999999999999999999999999999997
No 51
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=34.61 E-value=60 Score=35.41 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=43.7
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 012052 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (472)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE-~~K~g~~~E~~wG 331 (472)
+||+|+|-|........+.+ -=++--+.+++.+.+.+. ..|.+.| -+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v~-----GY~~WSl~DnfEw~~G-~y~~RfG 441 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDLM-----GYTPWGCIDCVSFTTG-QYSKRYG 441 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchhhhcccCC-CccCccc
Confidence 58999999988643211111 122233344444444441 2466543 3788888884 36554 4889999
Q ss_pred ccCCCCC
Q 012052 332 LFYPNEQ 338 (472)
Q Consensus 332 lf~~d~~ 338 (472)
|++.|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9988765
No 52
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=34.56 E-value=52 Score=35.67 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEec
Q 012052 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAF 79 (472)
Q Consensus 43 v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv 79 (472)
-.|+|+.+|+++||+...++.-+.++.+.||+|.=-+
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 3689999999999999999999999999999997333
No 53
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=34.17 E-value=53 Score=36.46 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecC
Q 012052 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (472)
Q Consensus 43 v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (472)
.+++|+..|+++||+..-+|.-+.++++.||+|.=-++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999874343
No 54
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=33.90 E-value=3.1e+02 Score=29.19 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=46.7
Q ss_pred HHHHHhhcCCceEEEecChhh----------------HHHhhhC-hHHHHHHHHHhhhhcC--CCceEEEEEeccccccC
Q 012052 63 AVLAALANSDISVVVAFPNEE----------------LSKAAAD-QSFTDNWVQANISKYY--PATKIEAVAVGNEVFAD 123 (472)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~~----------------l~~la~~-~~~a~~wv~~~v~~~~--p~~~I~~I~VGNE~l~~ 123 (472)
.+|++++..|++.+++..|+- ...|..+ .++=...+.+ |..|+ -+.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 578999999999998875420 0111111 1111122222 22222 24789999999999876
Q ss_pred CC-----CC--hhh-HHHHHHHHHHHHHhCCCCCCeEEecccc
Q 012052 124 PK-----NT--TPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIA 158 (472)
Q Consensus 124 ~~-----~~--~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~ 158 (472)
+. +. ..+ ....|+.++.+|++.||..+ |..+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 41 11 223 78889999999999999754 555554
No 55
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=32.62 E-value=56 Score=33.50 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CC
Q 012052 243 LDAVFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QK 321 (472)
Q Consensus 243 ~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K 321 (472)
.+.+..+|+++.--+++|.|||.-=-....... ....+.++.+++.+++.+.+.. +..-..+.+..+.|.. |.
T Consensus 219 ~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~-~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~ 292 (320)
T PF00331_consen 219 PEQIWNALDRFASLGLPIHITELDVRDDDNPPD-AEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWR 292 (320)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC-HHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTT
T ss_pred HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc-hHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCccc
Confidence 344555556655557999999964333322110 2457778889999999887621 0001224444455543 55
Q ss_pred CCCCCCccccccCCCCCeee
Q 012052 322 PGPTSERNYGLFYPNEQTVY 341 (472)
Q Consensus 322 ~g~~~E~~wGlf~~d~~~ky 341 (472)
+... -.+=+||+.|.+||-
T Consensus 293 ~~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 293 PDTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp GGHS-EG--SSB-TTSBB-H
T ss_pred CCCC-CCCCeeECCCcCCCH
Confidence 4311 233478999998884
No 56
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=32.19 E-value=67 Score=25.25 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhcCCCceEEEEEeccccccCCC--CChhh-HHHHHHHHHHHHHhC
Q 012052 94 TDNWVQANISKYYPATKIEAVAVGNEVFADPK--NTTPF-LVPAMKNVYNSLVKY 145 (472)
Q Consensus 94 a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~--~~~~~-L~~am~nv~~aL~~~ 145 (472)
-..|+++||.- |+|.++.++ .+... |+|+++..++.++..
T Consensus 13 Li~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 13 LIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 46799988743 455565432 22333 999999999888643
No 57
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=31.47 E-value=1.1e+02 Score=26.40 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHhhcCCceEE
Q 012052 41 EKVVELLKSQRIDRVKTYD--TD---SAVLAALANSDISVV 76 (472)
Q Consensus 41 ~~v~~ll~s~~~~~VRlY~--~d---~~vL~A~~~tgi~V~ 76 (472)
+++.+.++.+|+..|+++- .. ..+|++|+..||+|.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4445677778999999983 32 679999999999865
No 58
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=30.82 E-value=3.4e+02 Score=28.09 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=47.3
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecChhhHHHhhhChHHHHHHHHHhhh
Q 012052 24 GKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANIS 103 (472)
Q Consensus 24 ~~~GvnYg~~~~n~ps~~~v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~la~~~~~a~~wv~~~v~ 103 (472)
.-+|||.-...++ +..++.++.+...+...|=+..-++..++.++..||+|+.-|++ ...|+.+.+.-+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC-
Confidence 3577777433222 33455566655666666666555565678888899999988774 233444444321
Q ss_pred hcCCCceEEEEEecccc
Q 012052 104 KYYPATKIEAVAVGNEV 120 (472)
Q Consensus 104 ~~~p~~~I~~I~VGNE~ 120 (472)
+ ..|+-|.|.
T Consensus 125 -----D--~vVaqG~EA 134 (320)
T cd04743 125 -----R--KFIFEGREC 134 (320)
T ss_pred -----C--EEEEecCcC
Confidence 2 346778887
No 59
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=29.23 E-value=1.9e+02 Score=31.73 Aligned_cols=186 Identities=16% Similarity=0.192 Sum_probs=98.9
Q ss_pred HHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccc
Q 012052 95 DNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFK 174 (472)
Q Consensus 95 ~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~ 174 (472)
...|..-|.+|--+..|-+-..-||.+.+...+.-.++...+.+.+.++..+-++-|.|+-+.+. |..--|+ .+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~~~py-N~r~- 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQYAPY-NARF- 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccccCCc-ccce-
Confidence 55677777777666678888889997775443333377777888888887776654555544332 3322222 2222
Q ss_pred cccchhhhhhHHHHHHhcCCccccccCCccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHHcC
Q 012052 175 SDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAIS 254 (472)
Q Consensus 175 ~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~~~l~~Alf~~~~~~~d~~~~~~y~n~fda~~dav~~A~~k~g 254 (472)
.+||- .-++||+|.. +| |+.- +..|-. ..+|-- .-+
T Consensus 199 ----------~vDya-------~~hLY~hyd~--sl------~~r~-----------s~~yg~---~~l~i~----~~~- 234 (587)
T COG3934 199 ----------YVDYA-------ANHLYRHYDT--SL------VSRV-----------STVYGK---PYLDIP----TIM- 234 (587)
T ss_pred ----------eeccc-------cchhhhhccC--Ch------hhee-----------eeeecc---hhhccc----hhc-
Confidence 34444 7789996643 22 1110 001111 011100 111
Q ss_pred CCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCC--CC--CCCCccc
Q 012052 255 YNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK--PG--PTSERNY 330 (472)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~~K--~g--~~~E~~w 330 (472)
+-+||+.-|-|-|++=... |.+.|.-.+. .+....| ...-..-|+-|-+--. ++ ..-|-.|
T Consensus 235 -g~~pV~leefGfsta~g~e-------~s~ayfiw~~-lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~f 299 (587)
T COG3934 235 -GWQPVNLEEFGFSTAFGQE-------NSPAYFIWIR-LALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEF 299 (587)
T ss_pred -ccceeeccccCCccccccc-------ccchhhhhhh-hHHhhcC------CceEEEEecCCccCCCCCCCcccccccee
Confidence 2489999999999974332 2222222111 1221111 1223455555542111 21 1357789
Q ss_pred cccCCCCCeeeee
Q 012052 331 GLFYPNEQTVYDS 343 (472)
Q Consensus 331 Glf~~d~~~ky~~ 343 (472)
||.+.|+.+|+..
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999864
No 60
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=28.97 E-value=47 Score=27.56 Aligned_cols=23 Identities=30% Similarity=0.662 Sum_probs=18.5
Q ss_pred hhhhhhhHHHHHHHHHhhhcCCC
Q 012052 2 ATLAAFSSFFFFFLVTFAFADTG 24 (472)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (472)
.+||.|+.++|++|+.++.+.+.
T Consensus 44 v~LA~FV~~lF~iL~~ms~sgsp 66 (90)
T PF15183_consen 44 VSLAAFVVFLFLILLYMSWSGSP 66 (90)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 36899999999999888766543
No 61
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.51 E-value=1.1e+02 Score=33.48 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=43.0
Q ss_pred ceEEEeeecCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcccc
Q 012052 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNYG 331 (472)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~na~~y~~~li~~~~s~~Gtp~rp~~~~~~y~F~~FDE~-~K~g~~~E~~wG 331 (472)
+||+|+|-|........+.+ -=++--+.+++.+.+.+. .|.+.| -+|.-++.|-- |..| ...+.||
T Consensus 366 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~V~-----GY~~WSl~Dn~Ew~~G-~y~~RfG 437 (474)
T PRK09852 366 KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIA--DGIPLM-----GYTTWGCIDLVSASTG-EMSKRYG 437 (474)
T ss_pred CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--CCCCEE-----EEEeecccccccccCC-Cccceee
Confidence 57999999987543211111 112233344444444442 466543 37888888842 5544 4788999
Q ss_pred ccCCCCC
Q 012052 332 LFYPNEQ 338 (472)
Q Consensus 332 lf~~d~~ 338 (472)
|++.|..
T Consensus 438 Lv~VD~~ 444 (474)
T PRK09852 438 FVYVDRD 444 (474)
T ss_pred eEEECCC
Confidence 9998765
No 62
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=28.05 E-value=87 Score=30.07 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecCh
Q 012052 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPN 81 (472)
Q Consensus 44 ~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~n 81 (472)
+++|+..|+++||+-..+|.=..++.+.||+|.=-++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 57899999999999999999999999999998877764
No 63
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.00 E-value=1.4e+02 Score=28.97 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=49.8
Q ss_pred CCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCceEEEe--cChhhHHHhhhChHHH
Q 012052 22 DTGKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVA--FPNEELSKAAADQSFT 94 (472)
Q Consensus 22 ~~~~~GvnYg~~~~n~ps~~~v~~ll~s~~~~~VRlY~~d-----~~vL~A~~~tgi~V~lG--v~n~~l~~la~~~~~a 94 (472)
..+.+||.|-...-.++. .--+++|||+- ..+.++....-+.++|. |.|+ .+-.+.
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne------~Sfeni 103 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE------KSFENI 103 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch------HHHHHH
Confidence 345678877555434443 22477889875 46777776555555554 4443 233455
Q ss_pred HHHHHHhhhhcCCCceEEEEEecccc
Q 012052 95 DNWVQANISKYYPATKIEAVAVGNEV 120 (472)
Q Consensus 95 ~~wv~~~v~~~~p~~~I~~I~VGNE~ 120 (472)
..|++ +|..+-++ .+.-|.|||-.
T Consensus 104 ~~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 104 RNWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHHH-HHHhhCCC-CCcEEEeeccc
Confidence 67875 57777554 68899999965
No 64
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=27.92 E-value=6.6e+02 Score=26.45 Aligned_cols=140 Identities=11% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCC--------------hHHHHHhhcC-Cce-EEEecChhhHHHhhhChHHHHH
Q 012052 36 NLPSPEKVVELLK---SQRIDRVKTYDTD--------------SAVLAALANS-DIS-VVVAFPNEELSKAAADQSFTDN 96 (472)
Q Consensus 36 n~ps~~~v~~ll~---s~~~~~VRlY~~d--------------~~vL~A~~~t-gi~-V~lGv~n~~l~~la~~~~~a~~ 96 (472)
..-++++|++.++ ..|++.|.+.+.| .++|+++... ++. +-++--+ ...+ + ..-.+
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~--~-~ell~ 239 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDI--D-EELLE 239 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhC--C-HHHHH
Confidence 3567888876554 4689999875421 2566666643 442 4444211 0111 1 11122
Q ss_pred HHHHhhhhcCCCceEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCC
Q 012052 97 WVQANISKYYPATKIEAVAVGNEVFAD-------PKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPS 169 (472)
Q Consensus 97 wv~~~v~~~~p~~~I~~I~VGNE~l~~-------~~~~~~~L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS 169 (472)
+++++ +. ....|.+|=|-... ...+......+++.+|+.. .| +.+++..-.+ +| .
T Consensus 240 ~m~~~-----~~-~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~IvG-----~P-g 301 (414)
T TIGR01579 240 AIASE-----KR-LCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIVG-----FP-G 301 (414)
T ss_pred HHHhc-----Cc-cCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEEE-----CC-C
Confidence 22221 00 12345555443321 1223333777777776632 22 4455543222 32 1
Q ss_pred CcccccccchhhhhhHHHHHHhcCCccccccCCcccc
Q 012052 170 SGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAY 206 (472)
Q Consensus 170 ~g~F~~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 206 (472)
| .+..+...++|+.+.+ +-.+++|||--+
T Consensus 302 ------E-T~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 302 ------E-SEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred ------C-CHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 1 1245788899997765 456777777544
No 65
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=27.49 E-value=1.3e+02 Score=29.43 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHHHHhhcCCceEEEecChh---hHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHH
Q 012052 63 AVLAALANSDISVVVAFPNE---ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVY 139 (472)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~---~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~ 139 (472)
..+++++..|+||++.|.+. ....+..++.+...++++. ..+...-.+.+|-+==|-... ........|+++|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~l-v~~~~~~~~DGIdiDwE~~~~---~~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKI-INYVVSYNLDGIDVDLEGPDV---TFGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHH-HHHHHHhCCCceeEEeeccCc---cHhHHHHHHHHHH
Confidence 45667777899999988543 1223445555444444433 222222234555554444322 1122778899999
Q ss_pred HHHHhCCC
Q 012052 140 NSLVKYKL 147 (472)
Q Consensus 140 ~aL~~~gl 147 (472)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987664
No 66
>PRK07198 hypothetical protein; Validated
Probab=27.30 E-value=52 Score=34.96 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHhhcCCceEEEecC
Q 012052 44 VELLKSQRIDRV-KTYDTDSAVLAALANSDISVVVAFP 80 (472)
Q Consensus 44 ~~ll~s~~~~~V-RlY~~d~~vL~A~~~tgi~V~lGv~ 80 (472)
.|+|+.+|+++| |+...++.-+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578999999999 9999999889999999999974443
No 67
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=26.63 E-value=1.2e+02 Score=28.11 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=45.1
Q ss_pred HHHHHhhcC--CceEEEecChhhHH---HhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HHHHHH
Q 012052 63 AVLAALANS--DISVVVAFPNEELS---KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMK 136 (472)
Q Consensus 63 ~vL~A~~~t--gi~V~lGv~n~~l~---~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~-L~~am~ 136 (472)
.-++.++.. |++|++.|...... .++.+.+..++.++ ++..+...-++.+|-+==|.....+..... ++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345566654 99999988642111 23445444333332 333332223455665533443221111234 999999
Q ss_pred HHHHHHHhCCC
Q 012052 137 NVYNSLVKYKL 147 (472)
Q Consensus 137 nv~~aL~~~gl 147 (472)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 68
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.43 E-value=1.4e+02 Score=26.43 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCEEEEecCChHHHHHhhcCCceEEEecC
Q 012052 41 EKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (472)
Q Consensus 41 ~~v~~ll~s~~~~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (472)
..+.++|+.+|++.|=+-..-+..+.+|++.||+|..+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578899999999999888889999999999999999987
No 69
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.95 E-value=1.6e+02 Score=30.56 Aligned_cols=75 Identities=24% Similarity=0.144 Sum_probs=50.0
Q ss_pred hHHHHHhhcCCceEEEec-ChhhHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHH
Q 012052 62 SAVLAALANSDISVVVAF-PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYN 140 (472)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv-~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~L~~am~nv~~ 140 (472)
..||+++..+|-.+.+|= |.+ .. .++.|.+|+...+..++ .+|.+|+--|.-... .. -+
T Consensus 175 m~VLkp~idsGkik~~Ge~~~d---~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag------Ga-------I~ 234 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQWTD---GW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG------GA-------IA 234 (341)
T ss_pred HHHHHHHhhCCceEEeeecccc---cc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH------HH-------HH
Confidence 478998888875544774 222 22 45678889988888775 448888877642222 12 25
Q ss_pred HHHhCCCCCCeEEecc
Q 012052 141 SLVKYKLDSNVKVSSP 156 (472)
Q Consensus 141 aL~~~gl~~~IkVsT~ 156 (472)
+|++.||+++|+||=-
T Consensus 235 aL~a~Gl~g~vpVsGQ 250 (341)
T COG4213 235 ALKAQGLAGKVPVSGQ 250 (341)
T ss_pred HHHhcccCCCCcccCc
Confidence 6788999988987643
No 70
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.91 E-value=1.6e+02 Score=25.80 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHhhcCCceEE
Q 012052 40 PEKVVELLKSQRIDRVKTY--D--------TD---SAVLAALANSDISVV 76 (472)
Q Consensus 40 ~~~v~~ll~s~~~~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 76 (472)
.+++.+.++.+|++.|+++ . .- ...|++|+..||+|.
T Consensus 52 a~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 52 AGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 3455667778899988887 3 22 578999999999975
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.65 E-value=6.4e+02 Score=24.32 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC---hHHHHHhhc--CCceEEE--ecChhhHHHhhhChHHHHHHHHHhhhhcCCCc
Q 012052 37 LPSPEKVVELLKSQRIDRVKTYDTD---SAVLAALAN--SDISVVV--AFPNEELSKAAADQSFTDNWVQANISKYYPAT 109 (472)
Q Consensus 37 ~ps~~~v~~ll~s~~~~~VRlY~~d---~~vL~A~~~--tgi~V~l--Gv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~ 109 (472)
+-|++|+.+.++ .|.+.|++|-++ ++-|+++++ .+++++. ||.- +++.+|++.
T Consensus 116 ~~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI~~----------~N~~~~l~a--------- 175 (213)
T PRK06552 116 CMTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGVNL----------DNVKDWFAA--------- 175 (213)
T ss_pred cCCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCCCH----------HHHHHHHHC---------
Confidence 558999988764 789999999655 567777763 3366553 3432 344566653
Q ss_pred eEEEEEeccccccCCC-CChhhHHHHHHHHHHHHH
Q 012052 110 KIEAVAVGNEVFADPK-NTTPFLVPAMKNVYNSLV 143 (472)
Q Consensus 110 ~I~~I~VGNE~l~~~~-~~~~~L~~am~nv~~aL~ 143 (472)
.+..|.||...+.... .+...+-...++++++++
T Consensus 176 Ga~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 176 GADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 4578899987764321 122226666666666554
No 72
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.71 E-value=4.7e+02 Score=26.40 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=45.4
Q ss_pred hHHHHHhhc--CCceEE--E--ecChh-hHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEecc-ccccC-CCCChhh-H
Q 012052 62 SAVLAALAN--SDISVV--V--AFPNE-ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGN-EVFAD-PKNTTPF-L 131 (472)
Q Consensus 62 ~~vL~A~~~--tgi~V~--l--Gv~n~-~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGN-E~l~~-~~~~~~~-L 131 (472)
...+.+++. .++||+ | |=|+. ....++++++.-..++++ +..+...-.+.+|-+=- |-... +...... +
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 334455553 579988 4 32433 466677776655555544 33332222345554421 11111 0111223 8
Q ss_pred HHHHHHHHHHHHhCCC
Q 012052 132 VPAMKNVYNSLVKYKL 147 (472)
Q Consensus 132 ~~am~nv~~aL~~~gl 147 (472)
+..|+++|++|.+.|+
T Consensus 133 ~~~l~el~~~l~~~~~ 148 (318)
T cd02876 133 IQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8999999999988765
No 73
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=23.46 E-value=8e+02 Score=25.50 Aligned_cols=137 Identities=17% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCC-------hHHHHHhhcCCce-EEEecChhhHHHhhhChHHHHHHHHHhhhh
Q 012052 36 NLPSPEKVVELLK---SQRIDRVKTYDTD-------SAVLAALANSDIS-VVVAFPNEELSKAAADQSFTDNWVQANISK 104 (472)
Q Consensus 36 n~ps~~~v~~ll~---s~~~~~VRlY~~d-------~~vL~A~~~tgi~-V~lGv~n~~l~~la~~~~~a~~wv~~~v~~ 104 (472)
++.|++++..+++ ..|+.+|||=+-. ..++..++..+++ |.++-.-..++..+ ..|-.+-+.
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a------~~Lk~AGl~- 113 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRA------ADLKEAGLD- 113 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHH------HHHHHcCCc-
Confidence 4668999976555 4789999998755 3566777766553 55554433444443 333332221
Q ss_pred cCCCceEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhh
Q 012052 105 YYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALK 183 (472)
Q Consensus 105 ~~p~~~I~~I~VGNE~l~~~~~~~~~-L~~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~ 183 (472)
.+||..=+.=.|.+-. .+-.. +-..|+-|.+|+ ++|+. +|||-|..-- ++++..+.
T Consensus 114 ---rVNVSLDsld~e~f~~--IT~~~~~~~Vl~GI~~A~-~~Gl~-pVKlN~Vv~k----------------gvNd~ei~ 170 (322)
T COG2896 114 ---RVNVSLDSLDPEKFRK--ITGRDRLDRVLEGIDAAV-EAGLT-PVKLNTVLMK----------------GVNDDEIE 170 (322)
T ss_pred ---EEEeecccCCHHHHHH--HhCCCcHHHHHHHHHHHH-HcCCC-ceEEEEEEec----------------CCCHHHHH
Confidence 1222211111111111 11111 445556665654 57887 4999886421 12224578
Q ss_pred hHHHHHHhcCCccccccCCccccc
Q 012052 184 PMLEFLRKTSSYLMVNAYPFFAYS 207 (472)
Q Consensus 184 ~~ldfL~~~~sp~~vNiyPyf~~~ 207 (472)
++++|..+.+- ..+|-++.
T Consensus 171 ~l~e~~~~~~~-----~lrfIE~m 189 (322)
T COG2896 171 DLLEFAKERGA-----QLRFIELM 189 (322)
T ss_pred HHHHHHhhcCC-----ceEEEEEe
Confidence 89999866554 33555553
No 74
>CHL00041 rps11 ribosomal protein S11
Probab=22.08 E-value=2.1e+02 Score=25.09 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHhhcCCceEE
Q 012052 41 EKVVELLKSQRIDRVKTYD--TD---SAVLAALANSDISVV 76 (472)
Q Consensus 41 ~~v~~ll~s~~~~~VRlY~--~d---~~vL~A~~~tgi~V~ 76 (472)
+++.+.++.+|++.|+++- .. ..+|++|+..||+|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3445666778999888883 22 678999999999865
No 75
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.75 E-value=4e+02 Score=26.99 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhhhHHHHHHhcCCccccccCCccccccCCCc
Q 012052 133 PAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADK 212 (472)
Q Consensus 133 ~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~ 212 (472)
.+.++++...++.|.-+ +++...... +.| + ++.+.++..+..+.+-|+.++.=+.....
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~~------~~~-------~--~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----- 171 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQG------FYP-------D--DPRLYPIYEAAEELGVPVVIHTGAGPGGA----- 171 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEecccccC------CCC-------C--ChHHHHHHHHHHHcCCCEEEEeCCCCCCc-----
Confidence 46677788888888765 665433211 112 1 14578999999999999998553332211
Q ss_pred cccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEeeec--CCCCC
Q 012052 213 ISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETG--WPSVG 271 (472)
Q Consensus 213 ~~l~~Alf~~~~~~~d~~~~~~y~n~fda~~dav~~A~~k~g~~~~~vvVtETG--WPS~G 271 (472)
.++...+ ++ .++|-+ +.+ +|+++||+++.| +|..-
T Consensus 172 -~~~~~~~-------~p-----------~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~ 208 (293)
T COG2159 172 -GLEKGHS-------DP-----------LYLDDV---ARK--FPELKIVLGHMGEDYPWEL 208 (293)
T ss_pred -ccccCCC-------Cc-----------hHHHHH---HHH--CCCCcEEEEecCCCCchhH
Confidence 1111000 00 122222 233 799999999999 88764
No 76
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=21.75 E-value=3.5e+02 Score=25.98 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCCCceEEEeee---cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCCCCCCCCCccEEEEEecC
Q 012052 242 QLDAVFAAMSAISYNDVKVVVTET---GWPSVGDENEAGAGAANAAAYNGNLVRRVLSG-SGTPLRPKDPLNVYLFALFN 317 (472)
Q Consensus 242 ~~dav~~A~~k~g~~~~~vvVtET---GWPS~G~~~~~~as~~na~~y~~~li~~~~s~-~Gtp~rp~~~~~~y~F~~FD 317 (472)
.+|.++.++.+. ++.|+|.=- ||...++.. ......+.++..+.+.+.+. ++. -....|+++|
T Consensus 63 ~ld~~v~~a~~~---gi~vild~h~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~~-------~~v~~~el~N 129 (281)
T PF00150_consen 63 RLDRIVDAAQAY---GIYVILDLHNAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKDN-------PPVVGWELWN 129 (281)
T ss_dssp HHHHHHHHHHHT---T-EEEEEEEESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTTT-------TTTEEEESSS
T ss_pred HHHHHHHHHHhC---CCeEEEEeccCcccccccccc---ccchhhHHHHHhhhhhhccccCCC-------CcEEEEEecC
Confidence 344444455554 577777543 474444332 33333444444433333321 121 1256899999
Q ss_pred CCCCC
Q 012052 318 ENQKP 322 (472)
Q Consensus 318 E~~K~ 322 (472)
|+--.
T Consensus 130 EP~~~ 134 (281)
T PF00150_consen 130 EPNGG 134 (281)
T ss_dssp SGCST
T ss_pred Ccccc
Confidence 99653
No 77
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=21.30 E-value=2.3e+02 Score=25.29 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHhhcCCceEEEecC
Q 012052 40 PEKVVELLKSQRIDRVKTYDT---------------------D--SAVLAALANSDISVVVAFP 80 (472)
Q Consensus 40 ~~~v~~ll~s~~~~~VRlY~~---------------------d--~~vL~A~~~tgi~V~lGv~ 80 (472)
|+++++.||..+++.|-+|.- | .++++|+...||+|++-+.
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 677788888777777777642 1 4678899999999998875
No 78
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=20.75 E-value=2.2e+02 Score=25.74 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHhhcCCceEE
Q 012052 40 PEKVVELLKSQRIDRVKTY--D--------TD---SAVLAALANSDISVV 76 (472)
Q Consensus 40 ~~~v~~ll~s~~~~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 76 (472)
.+++.+.++.+|++.|+++ . .. ..+|++|+..||+|.
T Consensus 59 ae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 59 AEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 3455667778899988887 3 22 478999999999965
No 79
>PRK03941 NTPase; Reviewed
Probab=20.26 E-value=6.1e+02 Score=23.93 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=40.1
Q ss_pred ceEEEecChhhHHHhhhChHHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHh
Q 012052 73 ISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVK 144 (472)
Q Consensus 73 i~V~lGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l~~~~~~~~~-L~~am~nv~~aL~~ 144 (472)
++|.||-.|. .-.+.+++.+..++|+..|.++.|=+.+=.+. .. .+ +.-|+++.+.+|+.
T Consensus 1 m~V~VGS~NP----------vKi~Av~~af~~~~~~~~v~~v~v~SgV~~QP-~g-eET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNP----------VKVEAVENVFGKIFDDVEVVGVEVDSGVPDQP-FG-EETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCH----------HHHHHHHHHHHHhCCCcEEEEecCCCCCCCCC-CC-HHHHHHHHHHHHHHHhc
Confidence 4677887662 11233555566666776788887776664442 23 55 99999999999985
No 80
>PHA01735 hypothetical protein
Probab=20.01 E-value=57 Score=26.12 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=19.5
Q ss_pred hhChHHHHHHHHHhhhhcCCCceEEEEEeccccc
Q 012052 88 AADQSFTDNWVQANISKYYPATKIEAVAVGNEVF 121 (472)
Q Consensus 88 a~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNE~l 121 (472)
..+..+|.+|+++| .|+++.|-|-.|
T Consensus 32 taDL~AA~d~Lk~N--------dItgv~~~gspl 57 (76)
T PHA01735 32 TADLRAACDWLKSN--------DITGVAVDGSPL 57 (76)
T ss_pred HHHHHHHHHHHHHC--------CCceeeCCCCHH
Confidence 34567899999985 688998876554
Done!