Query 012054
Match_columns 472
No_of_seqs 185 out of 1121
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05507 Bromo_brd8_like Bromod 100.0 4.7E-28 1E-32 208.9 11.2 102 267-368 2-103 (104)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 1.3E-26 2.9E-31 205.2 11.2 104 268-371 5-109 (119)
3 cd05505 Bromo_WSTF_like Bromod 99.9 1.2E-26 2.6E-31 198.4 10.5 95 270-364 2-96 (97)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.3E-26 2.8E-31 201.3 10.8 96 272-367 9-106 (107)
5 cd05495 Bromo_cbp_like Bromodo 99.9 3.3E-26 7.1E-31 198.9 11.9 101 269-369 4-107 (108)
6 KOG1474 Transcription initiati 99.9 2.8E-26 6.1E-31 250.5 10.8 106 267-372 221-328 (640)
7 cd05504 Bromo_Acf1_like Bromod 99.9 9.3E-26 2E-30 198.2 11.6 102 267-368 11-112 (115)
8 cd05502 Bromo_tif1_like Bromod 99.9 1.1E-25 2.3E-30 195.2 11.9 103 268-371 4-109 (109)
9 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.3E-25 2.9E-30 191.2 10.6 96 270-365 2-97 (97)
10 cd05508 Bromo_RACK7 Bromodomai 99.9 1.7E-25 3.7E-30 192.2 10.5 94 271-365 6-99 (99)
11 cd05509 Bromo_gcn5_like Bromod 99.9 3.2E-25 7E-30 189.1 11.1 97 271-367 4-100 (101)
12 cd05528 Bromo_AAA Bromodomain; 99.9 7.8E-25 1.7E-29 191.8 10.9 100 271-370 6-109 (112)
13 cd05510 Bromo_SPT7_like Bromod 99.9 8.9E-25 1.9E-29 191.5 11.2 99 270-368 9-109 (112)
14 cd05513 Bromo_brd7_like Bromod 99.9 7.7E-25 1.7E-29 187.8 10.4 94 270-363 3-96 (98)
15 cd05506 Bromo_plant1 Bromodoma 99.9 1E-24 2.2E-29 185.2 10.9 95 270-364 2-98 (99)
16 cd05512 Bromo_brd1_like Bromod 99.9 1.3E-24 2.8E-29 186.2 10.5 91 270-360 3-93 (98)
17 cd05498 Bromo_Brdt_II_like Bro 99.9 1.7E-24 3.8E-29 184.9 10.5 96 270-365 2-102 (102)
18 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.9E-24 4.2E-29 185.0 10.7 96 270-365 2-102 (102)
19 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.7E-24 5.8E-29 186.6 10.6 98 270-367 3-106 (107)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3E-24 6.6E-29 184.5 10.9 98 268-365 4-103 (103)
21 cd05511 Bromo_TFIID Bromodomai 99.9 4E-24 8.6E-29 187.0 11.2 99 271-369 3-101 (112)
22 cd05501 Bromo_SP100C_like Brom 99.9 9.9E-24 2.1E-28 182.6 11.8 99 269-370 3-101 (102)
23 cd05524 Bromo_polybromo_I Brom 99.9 2.5E-23 5.3E-28 182.4 11.6 103 269-371 3-111 (113)
24 cd05520 Bromo_polybromo_III Br 99.9 1.6E-23 3.5E-28 180.8 9.6 94 271-364 3-102 (103)
25 cd05515 Bromo_polybromo_V Brom 99.9 3.9E-23 8.4E-28 178.6 10.7 95 271-365 3-103 (105)
26 smart00297 BROMO bromo domain. 99.9 6.8E-23 1.5E-27 173.8 11.2 99 269-367 8-106 (107)
27 cd05519 Bromo_SNF2 Bromodomain 99.9 5E-23 1.1E-27 177.0 10.4 94 271-364 3-102 (103)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 8.4E-23 1.8E-27 182.6 11.4 100 267-366 23-126 (128)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 1.6E-22 3.5E-27 175.7 10.1 94 271-364 5-104 (106)
30 cd05518 Bromo_polybromo_IV Bro 99.9 1.6E-22 3.4E-27 174.8 9.8 93 271-363 3-101 (103)
31 cd05517 Bromo_polybromo_II Bro 99.9 2.6E-22 5.6E-27 173.4 10.1 94 270-363 2-101 (103)
32 PF00439 Bromodomain: Bromodom 99.9 7.1E-22 1.5E-26 160.8 9.4 84 273-356 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.9 1E-21 2.2E-26 160.7 10.0 94 271-364 3-98 (99)
34 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.6E-21 5.6E-26 169.3 11.2 97 272-368 4-106 (109)
35 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.2E-21 4.8E-26 167.6 10.4 92 272-363 5-102 (104)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 7E-21 1.5E-25 165.5 10.4 94 271-366 4-103 (106)
37 cd05526 Bromo_polybromo_VI Bro 99.7 3.7E-17 8E-22 143.6 10.3 97 270-368 5-107 (110)
38 KOG1245 Chromatin remodeling c 99.7 1.3E-17 2.8E-22 194.5 8.0 97 273-370 1306-1402(1404)
39 COG5076 Transcription factor i 99.7 2.6E-17 5.7E-22 169.3 7.5 89 283-371 163-251 (371)
40 KOG1472 Histone acetyltransfer 99.5 1E-14 2.2E-19 160.2 5.7 102 270-371 608-709 (720)
41 cd05494 Bromodomain_1 Bromodom 99.2 6.9E-12 1.5E-16 110.6 2.7 77 270-346 5-90 (114)
42 KOG0955 PHD finger protein BR1 99.2 3.5E-11 7.5E-16 137.4 7.6 102 270-371 567-668 (1051)
43 KOG0008 Transcription initiati 99.0 2.2E-10 4.7E-15 131.4 6.8 93 277-369 1391-1483(1563)
44 cd05491 Bromo_TBP7_like Bromod 99.0 4E-10 8.6E-15 100.5 4.3 43 305-347 61-103 (119)
45 KOG0386 Chromatin remodeling c 98.7 1.5E-08 3.2E-13 114.6 7.6 102 270-371 1026-1133(1157)
46 KOG0008 Transcription initiati 98.7 1.8E-08 3.8E-13 116.2 6.8 96 270-365 1263-1358(1563)
47 KOG1827 Chromatin remodeling c 98.7 2.2E-08 4.7E-13 109.6 6.9 97 269-365 53-155 (629)
48 KOG1474 Transcription initiati 98.7 5.3E-09 1.2E-13 115.5 1.2 95 279-373 3-99 (640)
49 KOG1472 Histone acetyltransfer 98.6 2.7E-08 5.9E-13 110.3 5.4 71 282-352 300-370 (720)
50 KOG1828 IRF-2-binding protein 98.5 2.2E-08 4.8E-13 103.8 1.5 97 271-367 22-118 (418)
51 KOG1828 IRF-2-binding protein 98.3 4.3E-07 9.3E-12 94.4 3.7 89 270-359 210-298 (418)
52 PF00249 Myb_DNA-binding: Myb- 98.1 5.2E-06 1.1E-10 62.1 4.5 46 7-58 2-47 (48)
53 smart00717 SANT SANT SWI3, AD 97.7 4.1E-05 9E-10 54.8 4.0 47 7-60 2-48 (49)
54 COG5076 Transcription factor i 97.6 2E-05 4.3E-10 81.8 0.8 97 272-368 267-363 (371)
55 cd00167 SANT 'SWI3, ADA2, N-Co 97.4 0.00027 5.7E-09 49.9 4.4 44 8-58 1-44 (45)
56 cd05493 Bromo_ALL-1 Bromodomai 96.9 0.0013 2.9E-08 60.0 5.3 65 308-372 59-123 (131)
57 PF13921 Myb_DNA-bind_6: Myb-l 96.8 0.00075 1.6E-08 52.1 2.5 52 9-69 1-53 (60)
58 TIGR02894 DNA_bind_RsfA transc 95.4 0.033 7.1E-07 52.7 5.8 92 6-105 4-127 (161)
59 PLN03212 Transcription repress 94.5 0.036 7.8E-07 55.6 3.9 46 6-57 25-70 (249)
60 PF13837 Myb_DNA-bind_4: Myb/S 94.2 0.073 1.6E-06 43.7 4.4 55 8-65 3-70 (90)
61 PLN03091 hypothetical protein; 94.1 0.092 2E-06 56.5 6.1 46 5-56 13-58 (459)
62 KOG0049 Transcription factor, 94.1 0.05 1.1E-06 60.8 4.2 51 6-63 360-411 (939)
63 PLN03212 Transcription repress 92.5 0.16 3.4E-06 51.1 4.5 48 6-61 78-125 (249)
64 PLN03091 hypothetical protein; 91.0 0.29 6.2E-06 52.9 4.7 49 6-62 67-115 (459)
65 KOG0457 Histone acetyltransfer 90.9 0.3 6.5E-06 52.5 4.7 46 5-57 71-116 (438)
66 KOG0732 AAA+-type ATPase conta 89.8 0.17 3.6E-06 59.7 1.9 64 284-347 531-601 (1080)
67 COG5259 RSC8 RSC chromatin rem 89.7 0.29 6.2E-06 53.1 3.4 45 6-58 279-323 (531)
68 KOG0048 Transcription factor, 88.9 0.8 1.7E-05 45.2 5.7 69 6-74 9-109 (238)
69 KOG0644 Uncharacterized conser 88.5 0.25 5.5E-06 56.8 2.1 61 305-365 1050-1110(1113)
70 PRK13923 putative spore coat p 87.0 1.9 4.2E-05 41.3 6.7 57 5-64 4-62 (170)
71 COG5114 Histone acetyltransfer 83.0 1.5 3.2E-05 46.0 4.2 45 5-56 62-106 (432)
72 KOG1279 Chromatin remodeling f 82.0 1.3 2.9E-05 48.7 3.7 49 2-58 249-297 (506)
73 TIGR01557 myb_SHAQKYF myb-like 77.2 5.5 0.00012 31.5 4.9 45 7-56 4-51 (57)
74 PF12776 Myb_DNA-bind_3: Myb/S 76.6 3.8 8.2E-05 34.0 4.1 34 28-63 33-66 (96)
75 smart00595 MADF subfamily of S 75.4 3.3 7.1E-05 34.0 3.3 29 27-63 28-56 (89)
76 KOG0050 mRNA splicing protein 74.6 3.1 6.7E-05 46.0 3.7 47 4-57 5-51 (617)
77 TIGR02606 antidote_CC2985 puta 68.3 6.8 0.00015 32.0 3.6 27 312-338 12-38 (69)
78 KOG0049 Transcription factor, 66.2 6.1 0.00013 45.0 3.8 55 6-64 412-466 (939)
79 PF13873 Myb_DNA-bind_5: Myb/S 60.1 21 0.00046 28.7 5.1 52 8-61 4-71 (78)
80 KOG4282 Transcription factor G 59.8 18 0.0004 37.3 5.8 55 7-64 55-118 (345)
81 KOG0048 Transcription factor, 58.6 6.4 0.00014 38.9 2.1 36 6-42 62-97 (238)
82 PF05377 FlaC_arch: Flagella a 57.7 9.4 0.0002 30.4 2.4 29 76-104 1-29 (55)
83 PF03693 RHH_2: Uncharacterise 53.7 16 0.00034 30.8 3.4 27 312-338 15-41 (80)
84 KOG1827 Chromatin remodeling c 53.4 1.8 3.9E-05 48.8 -3.0 72 288-359 215-286 (629)
85 KOG0644 Uncharacterized conser 51.9 5.3 0.00011 46.6 0.3 85 267-361 73-187 (1113)
86 PF10545 MADF_DNA_bdg: Alcohol 47.3 22 0.00048 28.2 3.2 31 27-63 27-57 (85)
87 PF09111 SLIDE: SLIDE; InterP 47.2 33 0.00072 31.0 4.6 33 7-39 50-85 (118)
88 KOG0051 RNA polymerase I termi 44.9 29 0.00064 39.3 4.7 54 5-65 435-513 (607)
89 PF04504 DUF573: Protein of un 42.0 80 0.0017 27.4 6.0 58 5-64 3-67 (98)
90 PF08172 CASP_C: CASP C termin 41.1 28 0.00061 35.1 3.5 31 74-104 92-122 (248)
91 cd02987 Phd_like_Phd Phosducin 37.5 23 0.0005 33.4 2.1 17 68-84 39-55 (175)
92 PF07882 Fucose_iso_N2: L-fuco 33.3 39 0.00086 32.9 3.0 54 293-347 18-71 (181)
93 PF03962 Mnd1: Mnd1 family; I 32.7 52 0.0011 31.8 3.7 38 70-107 64-101 (188)
94 COG5509 Uncharacterized small 32.1 50 0.0011 27.0 2.9 33 68-107 18-50 (65)
95 PF12949 HeH: HeH/LEM domain; 31.3 19 0.0004 26.2 0.3 26 73-98 2-27 (35)
96 PF07716 bZIP_2: Basic region 31.2 77 0.0017 24.3 3.8 36 69-104 19-54 (54)
97 cd02988 Phd_like_VIAF Phosduci 28.0 45 0.00097 32.1 2.4 17 68-84 60-76 (192)
98 PF06005 DUF904: Protein of un 27.6 1.2E+02 0.0026 25.2 4.6 51 55-106 6-56 (72)
99 smart00586 ZnF_DBF Zinc finger 27.5 58 0.0013 25.4 2.5 12 49-60 9-20 (49)
100 PF08074 CHDCT2: CHDCT2 (NUC03 27.0 57 0.0012 31.5 2.8 56 6-62 3-58 (173)
101 COG4026 Uncharacterized protei 25.7 1.1E+02 0.0023 31.2 4.6 49 55-104 130-178 (290)
102 PF04859 DUF641: Plant protein 25.6 1.1E+02 0.0025 28.2 4.5 51 54-104 56-123 (131)
103 COG5493 Uncharacterized conser 23.8 1.2E+02 0.0026 30.3 4.5 44 50-93 21-64 (231)
104 COG5481 Uncharacterized conser 22.9 1.1E+02 0.0025 25.0 3.4 32 74-105 10-47 (67)
105 KOG4466 Component of histone d 22.6 2E+02 0.0043 30.1 5.9 62 46-107 35-134 (291)
106 PRK10219 DNA-binding transcrip 21.4 1.2E+02 0.0027 25.5 3.6 45 51-95 31-77 (107)
No 1
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=4.7e-28 Score=208.90 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
++|.+.|+.||+.|..|+.+++|..||+.+.+|+|+++|++||||+||++||++|.|.++.||.+||.|||+||++||++
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 012054 347 NTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
++.+|.+|..|++.|.++|.+.
T Consensus 82 ~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 82 DHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998764
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=205.18 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC-
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK- 346 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p- 346 (472)
.|.+.|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|..||.|||.||+.||++
T Consensus 5 ~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~ 84 (119)
T cd05496 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNK 84 (119)
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 347 NTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
++.+|.+|..|..+|.+++.++++.
T Consensus 85 ~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 85 RSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988754
No 3
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=198.44 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
.+.|..||+.|+.++.+++|..||+..++|+||++|++||||+||++||++|.|.|+++|.+||.|||+||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012054 350 EHKSAFLLRTIVLKT 364 (472)
Q Consensus 350 i~k~A~~L~~lf~k~ 364 (472)
++.+|..|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=201.29 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 272 DIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 272 ~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
.+..||+.|+.|+.+++|..||+.. ++|+||++|++||||+||++||++|.|.++.||..||.|||.||+.||++++.
T Consensus 9 ~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 88 (107)
T cd05497 9 LLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDD 88 (107)
T ss_pred HHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3457899999999999999999976 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012054 350 EHKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m~k 367 (472)
++.+|..|.++|.++|.+
T Consensus 89 i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 89 VVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999876
No 5
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.3e-26 Score=198.95 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHhcC-cccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCC
Q 012054 269 SIDDIKGVFESVAQN-ESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 345 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~-k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~ 345 (472)
..+.|+.||+.|+.+ +.+++|..||+.. ++|+||++|++||||+||++||++|.|.++.+|.+||.|||+||+.||+
T Consensus 4 l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 83 (108)
T cd05495 4 LRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNR 83 (108)
T ss_pred HHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 357899999999999 9999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Q 012054 346 KNTREHKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 346 p~S~i~k~A~~L~~lf~k~m~k~l 369 (472)
++|.+|.+|..|+++|.++|...+
T Consensus 84 ~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 84 KTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 6
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.93 E-value=2.8e-26 Score=250.52 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=101.3
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
....+.|..||..|+.|+++|+|+.|||.. ++||||+||++||||+|||.||++|.|.++.||+.||+|||+||+.||
T Consensus 221 ~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YN 300 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYN 300 (640)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 345 SKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
++++++|.||..|+++|..+|..+....
T Consensus 301 p~g~dV~~Ma~~L~~~Fe~rw~~~~~~~ 328 (640)
T KOG1474|consen 301 PEGSDVYAMAKKLQEVFEERWASMPLEI 328 (640)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999876553
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.3e-26 Score=198.23 Aligned_cols=102 Identities=17% Similarity=0.317 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
......|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.|+++|..||.|||+||+.||++
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 012054 347 NTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+|.+|.+|..|+++|.++++++
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 8
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=195.23 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhc---CCCCCHHHHHHHHHHHHHhhhccC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS---HSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLes---g~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
.+.+.|..||..|+.++.+++|..||+. .+|+|+++|++||||+||++||+. |.|.++++|.+||.|||+||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999 899999999999999999999998 699999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 345 SKNTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
++++.++.+|..|++.|.+.|.+++|+
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999875
No 9
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=191.15 Aligned_cols=96 Identities=21% Similarity=0.364 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
...|..||+.|..++.+++|..||+...+|+|+++|++||||+||++||++|.|.|+++|..||.|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012054 350 EHKSAFLLRTIVLKTM 365 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m 365 (472)
++.+|..|+++|.+++
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 10
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.7e-25 Score=192.16 Aligned_cols=94 Identities=17% Similarity=0.272 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHH
Q 012054 271 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTRE 350 (472)
Q Consensus 271 k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i 350 (472)
..|..+++.|. |+.+++|..||+..++|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||+++|.+
T Consensus 6 ~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i 84 (99)
T cd05508 6 KLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKL 84 (99)
T ss_pred HHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 46778888888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012054 351 HKSAFLLRTIVLKTM 365 (472)
Q Consensus 351 ~k~A~~L~~lf~k~m 365 (472)
+.+|..|.++|..+|
T Consensus 85 ~~~A~~l~~~~~~e~ 99 (99)
T cd05508 85 TQAAKAIVKICEQEM 99 (99)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999987764
No 11
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.2e-25 Score=189.10 Aligned_cols=97 Identities=24% Similarity=0.409 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHH
Q 012054 271 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTRE 350 (472)
Q Consensus 271 k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i 350 (472)
+.|..||+.|..|+.+++|.+||+...+|+|+++|++||||+||++||++|.|.|+++|..||.|||+||+.||++++.+
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~ 83 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEY 83 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012054 351 HKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 351 ~k~A~~L~~lf~k~m~k 367 (472)
+.+|..|++.|++.|.+
T Consensus 84 ~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 84 YKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999876
No 12
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.92 E-value=7.8e-25 Score=191.79 Aligned_cols=100 Identities=21% Similarity=0.338 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC---
Q 012054 271 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN--- 347 (472)
Q Consensus 271 k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~--- 347 (472)
..|..|++.|+.|+.+++|.+||+.+++|+||++|++||||+||++||+++.|.|+++|..||.|||+||+.||+++
T Consensus 6 ~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~ 85 (112)
T cd05528 6 LFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPA 85 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHhc
Q 012054 348 -TREHKSAFLLRTIVLKTMRQYFK 370 (472)
Q Consensus 348 -S~i~k~A~~L~~lf~k~m~k~l~ 370 (472)
+.++.+|..|++.|...+.+.+|
T Consensus 86 ~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 86 DKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999998765
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=8.9e-25 Score=191.55 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhcC-cccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 012054 270 IDDIKGVFESVAQN-ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 348 (472)
Q Consensus 270 ~k~L~~IL~~I~s~-k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S 348 (472)
.+.|..||+.|+.+ +++++|..||+..++|+||++|++||||+||++||++|.|.|+++|.+||.|||+||+.||++++
T Consensus 9 ~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s 88 (112)
T cd05510 9 YESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPS 88 (112)
T ss_pred HHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46899999999999 89999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -HHHHHHHHHHHHHHHHHHHH
Q 012054 349 -REHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 349 -~i~k~A~~L~~lf~k~m~k~ 368 (472)
.++.+|..|++.|.+.|..+
T Consensus 89 ~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 89 HPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 67899999999999888764
No 14
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.7e-25 Score=187.84 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
.+.|..||+.|+.++.+++|..||+...+|+|+++|++||||+||++||+++.|.|+.+|..||.|||.||+.||+++|.
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05513 3 QKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTI 82 (98)
T ss_pred HHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012054 350 EHKSAFLLRTIVLK 363 (472)
Q Consensus 350 i~k~A~~L~~lf~k 363 (472)
+|++|..|++.-.+
T Consensus 83 ~~~~A~~L~~~~~~ 96 (98)
T cd05513 83 YYKAAKKLLHSGMK 96 (98)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999875443
No 15
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1e-24 Score=185.22 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
.+.|..||+.|+.++.+++|..||+.. ++|+|+++|++||||+||++||++|.|.++++|..||.|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 368999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012054 348 TREHKSAFLLRTIVLKT 364 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~ 364 (472)
|.+|.+|..|++.|+++
T Consensus 82 s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 82 NDVHTMAKELLKIFETR 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 16
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=186.15 Aligned_cols=91 Identities=22% Similarity=0.338 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
...|..+|+.|+.++.+++|..||+..++|+|+++|++||||+||++||++|.|.+++||..||.|||+||+.||++++.
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTI 82 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012054 350 EHKSAFLLRTI 360 (472)
Q Consensus 350 i~k~A~~L~~l 360 (472)
+|++|..|++.
T Consensus 83 ~~~~A~~l~~~ 93 (98)
T cd05512 83 FYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 17
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=184.91 Aligned_cols=96 Identities=19% Similarity=0.302 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcC---cccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 270 IDDIKGVFESVAQN---ESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 270 ~k~L~~IL~~I~s~---k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
.+.|..||+.|+.+ +.+++|..||+.. ++|+|+++|++||||+||++||++|.|.|+++|..||.|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 8899999999976 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKTM 365 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m 365 (472)
+++|.++.+|..|+++|.+.+
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998753
No 18
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.9e-24 Score=185.02 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcC---cccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 270 IDDIKGVFESVAQN---ESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 270 ~k~L~~IL~~I~s~---k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
.+.|..||+.|+.+ ..+++|..||+.. ++|+||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 47899999999984 5689999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKTM 365 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m 365 (472)
++++.++.+|..|+++|.++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 19
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=186.56 Aligned_cols=98 Identities=19% Similarity=0.351 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcc
Q 012054 270 IDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 343 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~Y 343 (472)
.+.|..||+.|..+++ +++|..|++...+|+||++|++||||+||++||++|.|.++.+|..||.|||.||+.|
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTF 82 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3688999999998877 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 012054 344 YSKNTREHKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 344 N~p~S~i~k~A~~L~~lf~k~m~k 367 (472)
|+++|.+|.+|..|+++|...+++
T Consensus 83 N~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 83 NLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3e-24 Score=184.47 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 345 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~ 345 (472)
...+.|..||+.|+.++.+++|..||+.. .+|+|+++|++||||+||++||.+|.|.++.+|..||.|||+||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999975 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 012054 346 KNTREHKSAFLLRTIVLKTM 365 (472)
Q Consensus 346 p~S~i~k~A~~L~~lf~k~m 365 (472)
++|.++.+|..|++.|.+.|
T Consensus 84 ~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 21
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4e-24 Score=187.00 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHH
Q 012054 271 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTRE 350 (472)
Q Consensus 271 k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i 350 (472)
--|..|++.|++++.+++|..||+....|+||++|++||||+||++||+++.|.++++|.+||.|||+||+.||++++.+
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i 82 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVY 82 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012054 351 HKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 351 ~k~A~~L~~lf~k~m~k~l 369 (472)
+.+|..|++.|...|..+-
T Consensus 83 ~~~A~~l~~~~~~~~~~~~ 101 (112)
T cd05511 83 TKKAKEMLELAEELLAERE 101 (112)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999988763
No 22
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.9e-24 Score=182.63 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 012054 269 SIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 348 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S 348 (472)
..+.|..||..|+.++.+++|..+ ...+|+||++|++||||+||++||.+|.|.|+.+|.+||+|||+||+.||+++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~- 79 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD- 79 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 357899999999999999999763 35899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 012054 349 REHKSAFLLRTIVLKTMRQYFK 370 (472)
Q Consensus 349 ~i~k~A~~L~~lf~k~m~k~l~ 370 (472)
.++.+|..|.+.|.+.+.+.+.
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=2.5e-23 Score=182.40 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 269 SIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
..+.|..||+.|..++. +.+|.++++...+|+||++|++||||+||++||+++.|.|+++|..||.|||+||+.
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999997544 468999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
||+++|.+|.+|..|+++|...+++++..
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999887654
No 24
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=1.6e-23 Score=180.84 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCc------ccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 271 DDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 271 k~L~~IL~~I~s~k------~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
.+|..|++.|..++ .+++|.++++....|+||++|++||||+||++||++|.|.++.+|..||.|||.||+.||
T Consensus 3 ~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 3 NPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred chHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57888888888765 577999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKT 364 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~ 364 (472)
++++.+|.+|..|+++|..+
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999753
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.9e-23 Score=178.65 Aligned_cols=95 Identities=21% Similarity=0.403 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcC------cccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 271 DDIKGVFESVAQN------ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 271 k~L~~IL~~I~s~------k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
+.|..||+.|..+ +.+++|.+|++..++|+||++|++||||+||++||.++.|.++++|..||.|||.||+.||
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN 82 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYN 82 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5788888888764 4578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKTM 365 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m 365 (472)
+++|.+|.+|..|+++|....
T Consensus 83 ~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 83 EPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 26
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=6.8e-23 Score=173.80 Aligned_cols=99 Identities=22% Similarity=0.354 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 012054 269 SIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 348 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S 348 (472)
-...|..|++.|..++.+++|..||+....|+|+++|++||||.||++||++|.|.|+.+|..||.|||.||+.||++++
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s 87 (107)
T smart00297 8 LQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDS 87 (107)
T ss_pred HHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012054 349 REHKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 349 ~i~k~A~~L~~lf~k~m~k 367 (472)
.++.+|..|++.|...|.+
T Consensus 88 ~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 88 EVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998875
No 27
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5e-23 Score=176.96 Aligned_cols=94 Identities=17% Similarity=0.283 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcC------cccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 271 DDIKGVFESVAQN------ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 271 k~L~~IL~~I~s~------k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
+.|..||+.|..+ +.+++|..|++..+.|+||++|++||||+||++||+.|.|.|+.+|..||.|||+||+.||
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 82 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYN 82 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6789999999954 4588999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKT 364 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~ 364 (472)
++++.+|.+|..|++.|...
T Consensus 83 ~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 83 QEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999764
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=8.4e-23 Score=182.58 Aligned_cols=100 Identities=24% Similarity=0.276 Sum_probs=95.5
Q ss_pred cchHHHHHHHHHHHh---cCcccccccccCCcc-ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 267 KDSIDDIKGVFESVA---QNESAFVFRHRLDSQ-KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~---s~k~A~~F~~PVd~q-e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
....+.|+.+|..|. .++.+++|..||+.. .+|+||++|++||||+||++||+++.|.++++|..||.|||.||+.
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~ 102 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAET 102 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 446689999999999 899999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMR 366 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~ 366 (472)
||++++.++.+|..|+++|...+.
T Consensus 103 yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 103 FNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988775
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=175.67 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 271 DDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 271 k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
+.|..||+.|...+. +++|.++++....|+||++|++||||+||++||++|.|.|+++|..||.|||+||+.||
T Consensus 5 ~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn 84 (106)
T cd05525 5 QVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYY 84 (106)
T ss_pred HHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 568888888887544 58999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKT 364 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~ 364 (472)
+++|.+|.+|..|+++|...
T Consensus 85 ~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 85 GRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999998753
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.6e-22 Score=174.84 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcC------cccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 271 DDIKGVFESVAQN------ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 271 k~L~~IL~~I~s~------k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
+.|..|++.|... ..+.+|..+++..++|+||++|++||||+||++||+++.|.|+++|..||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5677777777754 5677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLK 363 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k 363 (472)
+++|.+|.+|..|+++|..
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.6e-22 Score=173.36 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcc
Q 012054 270 IDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 343 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~Y 343 (472)
++.|..||+.|..+.+ +++|.++++..+.|+||++|++||||+||++||+++.|.++.+|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678889999887654 5899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 012054 344 YSKNTREHKSAFLLRTIVLK 363 (472)
Q Consensus 344 N~p~S~i~k~A~~L~~lf~k 363 (472)
|+++|.+|.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=7.1e-22 Score=160.81 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHH
Q 012054 273 IKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHK 352 (472)
Q Consensus 273 L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k 352 (472)
|..||+.|+.|+.+++|..||+....|+|+++|++||||.||++||++|.|.++.+|..||.|||.||+.||++++.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012054 353 SAFL 356 (472)
Q Consensus 353 ~A~~ 356 (472)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9964
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=1e-21 Score=160.69 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcC--cccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 012054 271 DDIKGVFESVAQN--ESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNT 348 (472)
Q Consensus 271 k~L~~IL~~I~s~--k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S 348 (472)
..|..|++.|..+ +.+++|..||+....|+|+++|++||||.+|++||.+|.|.++.+|..||.|||.||+.||++++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~ 82 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGS 82 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012054 349 REHKSAFLLRTIVLKT 364 (472)
Q Consensus 349 ~i~k~A~~L~~lf~k~ 364 (472)
.++.+|..|+.+|...
T Consensus 83 ~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 83 PIYKDAKKLEKLFEKL 98 (99)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998765
No 34
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=2.6e-21 Score=169.34 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=87.0
Q ss_pred HHHHHHHHHhc-CcccccccccCCc-----cccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCC
Q 012054 272 DIKGVFESVAQ-NESAFVFRHRLDS-----QKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 345 (472)
Q Consensus 272 ~L~~IL~~I~s-~k~A~~F~~PVd~-----qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~ 345 (472)
.|..++..+.+ -+-..+|+.||.. +++|+|+++|++||||+||++||++|.|++++||.+||.|||+||+.||+
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHG 83 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35566667666 4556899999963 36999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 012054 346 KNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 346 p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
++|.++.+|..|.+.+..+|.++
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 35
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.2e-21 Score=167.60 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=84.6
Q ss_pred HHHHHHHHHhc------CcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCC
Q 012054 272 DIKGVFESVAQ------NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 345 (472)
Q Consensus 272 ~L~~IL~~I~s------~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~ 345 (472)
.+..||+.|.. ++.+++|.++++....|+||++|++||||+||++||..+.|.++++|..||.|||.||+.||+
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~ 84 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNE 84 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45556666654 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 012054 346 KNTREHKSAFLLRTIVLK 363 (472)
Q Consensus 346 p~S~i~k~A~~L~~lf~k 363 (472)
+++.+|.+|..|++.|..
T Consensus 85 ~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 85 NDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7e-21 Score=165.50 Aligned_cols=94 Identities=16% Similarity=0.271 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 271 DDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 271 k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
+.|..||+.|...+. +.+|..+++...+|+||++|++||||+||++||+. |.++++|..||.|||+||..||
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN 81 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYN 81 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHc
Confidence 578889998887554 35999988888999999999999999999999998 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKTMR 366 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m~ 366 (472)
++++.+|.+|..|+++|...|.
T Consensus 82 ~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 82 TKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred CCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988763
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.71 E-value=3.7e-17 Score=143.55 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcc
Q 012054 270 IDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 343 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~Y 343 (472)
.+.|..|++.|+.|.+ +.+|.+... ..++|+.+|++||||.+|++||++|.|.++++|..||.|||+||..|
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 4688999999998864 457777665 44678899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 012054 344 YSKNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 344 N~p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
|.++|.+|.+|..|+.+|.+.-.++
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765543
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.3e-17 Score=194.46 Aligned_cols=97 Identities=22% Similarity=0.338 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHH
Q 012054 273 IKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHK 352 (472)
Q Consensus 273 L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k 352 (472)
|..||..|..|++||||+.||+...+|+||+||++||||.||+.||..|.|.+..+|..||.|||.||..||.. +.++.
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 012054 353 SAFLLRTIVLKTMRQYFK 370 (472)
Q Consensus 353 ~A~~L~~lf~k~m~k~l~ 370 (472)
+...|+++|.+.+...++
T Consensus 1385 ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hcchHHHHHHHHHHhhcC
Confidence 999999999997777665
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=2.6e-17 Score=169.35 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=85.0
Q ss_pred CcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 012054 283 NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVL 362 (472)
Q Consensus 283 ~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~lf~ 362 (472)
....++|..+++..+.|+||.||+.||||.||++||+.+.|.+++||..||+|||+||..||.+++.+|.+|..|++.|.
T Consensus 163 ~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~ 242 (371)
T COG5076 163 RFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFL 242 (371)
T ss_pred cccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 012054 363 KTMRQYFKD 371 (472)
Q Consensus 363 k~m~k~l~~ 371 (472)
..+..+...
T Consensus 243 ~~i~~~~~~ 251 (371)
T COG5076 243 KLIEEIPEE 251 (371)
T ss_pred HHHHhcccc
Confidence 999977555
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.51 E-value=1e-14 Score=160.18 Aligned_cols=102 Identities=15% Similarity=0.310 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
.-.+..||..|..|.++|||.+||+..++|+||++|++||||.||+-+|..++|....+|.+|+.+||+||.+||+.++.
T Consensus 608 ~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~ 687 (720)
T KOG1472|consen 608 FSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQ 687 (720)
T ss_pred hHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccch
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 012054 350 EHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
.|+.|..|..+|...|.+.+.-
T Consensus 688 y~k~~~~le~~~~~k~~~~i~~ 709 (720)
T KOG1472|consen 688 YYKCAQALEKFFLFKLNELILR 709 (720)
T ss_pred heecccchhhhhcchhhhhhhh
Confidence 9999999999999998887544
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.19 E-value=6.9e-12 Score=110.63 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCcccccccccCCc--cccchhHHhhcCCCCHHHHHHhhhcCCC-------CCHHHHHHHHHHHHHhh
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDS--QKRGRYKKMILRHMDVDTIRSKISSHSI-------MSIKELFRDLLLLANNA 340 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~--qe~PdY~~IIK~PMDLsTIKrKLesg~Y-------~S~~EF~rDL~LMf~NA 340 (472)
.+.|+.+|..+..++.+|+|..||+. .++|+|+++|++||||+||+++|.++.| .--..+.+++..+..||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 46777888888888899999999999 7999999999999999999999999733 33335566777777777
Q ss_pred hccCCC
Q 012054 341 VVFYSK 346 (472)
Q Consensus 341 ~~YN~p 346 (472)
.-||..
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 777664
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.17 E-value=3.5e-11 Score=137.35 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
.+.|..+|+.|...+...+|..||+..++|||.++|++||||.||+.++++|.|.++++|..|+.||+.||+.||..++.
T Consensus 567 ~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv 646 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTV 646 (1051)
T ss_pred HHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCee
Confidence 45666889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 012054 350 EHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
+|.+|..|+++....+.+....
T Consensus 647 ~~r~av~~~e~~~~~~~~arke 668 (1051)
T KOG0955|consen 647 YYRAAVRLRELIKKDFRNARKE 668 (1051)
T ss_pred hHhhhHHHHhhhhhHHHhcccc
Confidence 9999999999988887766443
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.04 E-value=2.2e-10 Score=131.41 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=83.0
Q ss_pred HHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHH
Q 012054 277 FESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFL 356 (472)
Q Consensus 277 L~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~ 356 (472)
..++..-+.+|+|+.||+...+|+||.+|++||||+||.+++..+.|.+..||.+|+.||+.|+..||+..+.+..-|.+
T Consensus 1391 vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k 1470 (1563)
T KOG0008|consen 1391 VSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARK 1470 (1563)
T ss_pred HHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHH
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHh
Q 012054 357 LRTIVLKTMRQYF 369 (472)
Q Consensus 357 L~~lf~k~m~k~l 369 (472)
+-.+....+.+.+
T Consensus 1471 ~~ev~~~~~~e~~ 1483 (1563)
T KOG0008|consen 1471 IGEVGLANLLEYI 1483 (1563)
T ss_pred HHHHHHHHHHHHH
Confidence 8777666555544
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.98 E-value=4e-10 Score=100.45 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=40.5
Q ss_pred hcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 305 ILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 305 IK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
+-.||||+||++||.+|+|.++.+|++||.|||+||..||.++
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 3469999999999999999999999999999999999999874
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.75 E-value=1.5e-08 Score=114.57 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhcc
Q 012054 270 IDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVF 343 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~Y 343 (472)
.+.+..|+.....+.+ ...|.........|+||.||+.|||+..|+++|.++.|.+..++..||++||+||..|
T Consensus 1026 ~~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1026 PKQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred hHHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhh
Confidence 3778888888875554 4689988888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 344 YSKNTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 344 N~p~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
|..+|.+|..|..|+.+|......+..+
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~~~ 1133 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEISKE 1133 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHhcc
Confidence 9999999999999999998887777644
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.71 E-value=1.8e-08 Score=116.22 Aligned_cols=96 Identities=10% Similarity=0.237 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
.-.|..|++.+...++..+|..||+..++++||.||..||||.|||+.|....|.+-++|..|+-||+.|..+||++.+.
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~ 1342 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLAS 1342 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHH
Confidence 34667778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012054 350 EHKSAFLLRTIVLKTM 365 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m 365 (472)
+...+..+..+.-..|
T Consensus 1343 ~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1343 LTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999988776554444
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.70 E-value=2.2e-08 Score=109.59 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 269 SIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
-...|..||..+..+.+ ...|.+.-+....|.||.+|-+||-|..|++|+..+.|.+.+.|+.|++||+.||..
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~ 132 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARL 132 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 35677788888877644 458888888889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTM 365 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m 365 (472)
||.+++.+|+++..|...|....
T Consensus 133 ~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 133 YNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred hcCcchhhhhhhhhhhcchhhhh
Confidence 99999999999999999887754
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.67 E-value=5.3e-09 Score=115.51 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=87.4
Q ss_pred HHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHH
Q 012054 279 SVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFL 356 (472)
Q Consensus 279 ~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~ 356 (472)
....|.++|+|..||+.. ..++||.+|++|||+.||..+|++.+|.+..+..+|+.-+|.||+.||.+.-.++.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 456789999999999976 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC
Q 012054 357 LRTIVLKTMRQYFKDNE 373 (472)
Q Consensus 357 L~~lf~k~m~k~l~~~~ 373 (472)
+..+|.+.+.....+..
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (640)
T KOG1474|consen 83 LEKLFPKKLRSMPSDEE 99 (640)
T ss_pred chhhccccccccccccc
Confidence 99999888877765543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.63 E-value=2.7e-08 Score=110.28 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=66.7
Q ss_pred cCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHH
Q 012054 282 QNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHK 352 (472)
Q Consensus 282 s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k 352 (472)
.++++++|..+|+...+|+||.||+-||||.|+-+|+..+.|.+.++|..|+.+||.||..||...+....
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~ 370 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLI 370 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999997654433
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.54 E-value=2.2e-08 Score=103.81 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHH
Q 012054 271 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTRE 350 (472)
Q Consensus 271 k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i 350 (472)
.....++..+.+...-..|--||.+.-.|+|.+||..|||+.||+.||+.+.|-+..+|..|..||++||.+||..++.+
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~ 101 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVP 101 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccc
Confidence 35556667777777777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012054 351 HKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 351 ~k~A~~L~~lf~k~m~k 367 (472)
+..|..|..+....+..
T Consensus 102 ~~aaKrL~~v~~~~~qe 118 (418)
T KOG1828|consen 102 IVAAKRLCPVRLGMTQE 118 (418)
T ss_pred cccccccchhhcchhhH
Confidence 99999998876655443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.29 E-value=4.3e-07 Score=94.44 Aligned_cols=89 Identities=13% Similarity=-0.062 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
...+.....++........|..++.+..+|.|.-+|++|+|+.|++.|+.+..|.| -+|..|+.|||.||++||.+.+.
T Consensus 210 ~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 210 QQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchH
Confidence 34555556777778888999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHH
Q 012054 350 EHKSAFLLRT 359 (472)
Q Consensus 350 i~k~A~~L~~ 359 (472)
.|..|..+.-
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999987654
No 52
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.07 E-value=5.2e-06 Score=62.07 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=40.3
Q ss_pred chhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
+.|..-|+.+|..||..||..+|..||..|. ...|+..|+.+|..|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~------~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP------GGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS------SSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC------CCCCHHHHHHHHHhh
Confidence 5799999999999999999999999999998 234899999999876
No 53
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.72 E-value=4.1e-05 Score=54.80 Aligned_cols=47 Identities=32% Similarity=0.591 Sum_probs=42.5
Q ss_pred chhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHH
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQ 60 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (472)
..|..-|+-+|..+|..||..+|..||..+..| |+..|+.+|..|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~r-------t~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGR-------TAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCC-------CHHHHHHHHHHHcC
Confidence 469999999999999999999999999999744 89999999998765
No 54
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.57 E-value=2e-05 Score=81.84 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHH
Q 012054 272 DIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREH 351 (472)
Q Consensus 272 ~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~ 351 (472)
....++..+..+-.+|+|.+++.+...|+|+++|..+|+++|++-++.++.|....+|.+|..++|+||..||.....++
T Consensus 267 ~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (371)
T COG5076 267 RESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYY 346 (371)
T ss_pred chhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhh
Confidence 33444555567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012054 352 KSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 352 k~A~~L~~lf~k~m~k~ 368 (472)
.-+..+..+|...++-.
T Consensus 347 ~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 347 KNANVLEDFVIKKTRLI 363 (371)
T ss_pred hhccchhhhHhhhhhhh
Confidence 99999999988877654
No 55
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.39 E-value=0.00027 Score=49.93 Aligned_cols=44 Identities=36% Similarity=0.700 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 8 ~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
.|..-|+-+|-.+|..||..+|..||..+..| |+..|+.+|..|
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~r-------s~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGR-------TPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCC-------CHHHHHHHHHHh
Confidence 48999999999999999999999999999775 888999999765
No 56
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.94 E-value=0.0013 Score=60.00 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 308 HMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 308 PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
|.||.-+++||+.|.|.|+.+|..||..|+.=++.=-+....+-++-..+.-+|++.|.+.++--
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf 123 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWF 123 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999998888777666666666677889999999987653
No 57
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.85 E-value=0.00075 Score=52.13 Aligned_cols=52 Identities=29% Similarity=0.615 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH-HHHHhcCCchHH
Q 012054 9 WGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED-LQQRFYGCKAWF 69 (472)
Q Consensus 9 wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~-l~~r~~~~~~w~ 69 (472)
|..-|+-+|..+|..||. +|..||..|.. .|+..|+.+|.. |...+.. ..|.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~-------Rt~~~~~~r~~~~l~~~~~~-~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGN-------RTPKQCRNRWRNHLRPKISR-GPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTT-------S-HHHHHHHHHHTTSTTSTS-SSSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCc-------CCHHHHHHHHHHHCcccccC-CCcC
Confidence 788899999999999995 89999999853 489999999999 7655553 3353
No 58
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.38 E-value=0.033 Score=52.65 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=59.4
Q ss_pred cchhhhhHHHHHHHHhhhccc------CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHH-HHhcCC-------------
Q 012054 6 IEVWGTWEELLLGGAVLRHGT------RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ-QRFYGC------------- 65 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~------~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~-~r~~~~------------- 65 (472)
...|..-|+||||..|+||=- +.++-|+..| ..|+..|+-+|.-.- .+|...
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--------~RTsAACGFRWNs~VRkqY~~~i~~AKkqRk~~~~ 75 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--------NRTAAACGFRWNAYVRKQYEEAIELAKKQRKELKR 75 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--------cccHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 457999999999999999932 3566665544 346677777765433 345432
Q ss_pred ----------chHHHHHHHH--HHHHHHHHHHhhhhchhhhhhhhHHHHhhh
Q 012054 66 ----------KAWFEELRKQ--RMAELKRALELSENSIGSLESKLETLKAER 105 (472)
Q Consensus 66 ----------~~w~eeLrk~--Rvaelrr~~~~~d~SIgsLqskvk~L~~er 105 (472)
...+..|... -...|+.|.++-..-+-.||.+++.|+.|-
T Consensus 76 ~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 76 EAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred CcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444432 245566667777777777777888777773
No 59
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.54 E-value=0.036 Score=55.59 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=38.8
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
...|..-|+-+|..+|.+||..+|..||..+. ...|+..|+.+|..
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g------~gRT~KQCReRW~N 70 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG------LLRCGKSCRLRWMN 70 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh------cCCCcchHHHHHHH
Confidence 46799999999999999999999999998763 22478899999874
No 60
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.17 E-value=0.073 Score=43.69 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=38.8
Q ss_pred hhhhhHHHHHHHHhhhcc-------------cCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcCC
Q 012054 8 VWGTWEELLLGGAVLRHG-------------TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGC 65 (472)
Q Consensus 8 ~wgt~eellL~~aV~rhg-------------~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~ 65 (472)
.|+.-|-++|..++.-|. ..-|..||.+|+.+-. ..|+..|+.||..|.++|-..
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~---~rt~~qc~~Kw~~L~~~Yk~~ 70 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGY---NRTPEQCRNKWKNLKKKYKKI 70 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 477777777766665521 1269999999998732 569999999999999999863
No 61
>PLN03091 hypothetical protein; Provisional
Probab=94.15 E-value=0.092 Score=56.52 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=38.2
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYE 56 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (472)
....|..-|+-+|-.+|.+||..+|..||..+- ...|+..|+.+|.
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g------~gRT~KQCRERW~ 58 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG------LQRCGKSCRLRWI 58 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc------cCcCcchHhHHHH
Confidence 345799999999999999999999999997753 2347778888886
No 62
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.11 E-value=0.05 Score=60.75 Aligned_cols=51 Identities=29% Similarity=0.510 Sum_probs=44.2
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHH-HHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYE-DLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~-~l~~r~~ 63 (472)
.+.|.|-|+.+|.|||.|||..+|--|-.++..| +...|+-+|. .|+++.-
T Consensus 360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnR-------SdsQcR~RY~nvL~~s~K 411 (939)
T KOG0049|consen 360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNR-------SDSQCRERYTNVLNRSAK 411 (939)
T ss_pred CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCc-------cHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999999888 4578999996 4666654
No 63
>PLN03212 Transcription repressor MYB5; Provisional
Probab=92.47 E-value=0.16 Score=51.11 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=40.8
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
...|..-|+.||..+|..||. .|..||..|..| |...|+.+|..+.++
T Consensus 78 kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGR-------TDnqIKNRWns~LrK 125 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGR-------TDNEIKNYWNTHLRK 125 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCC-------CHHHHHHHHHHHHhH
Confidence 467999999999999999996 599999999877 678999998776554
No 64
>PLN03091 hypothetical protein; Provisional
Probab=90.99 E-value=0.29 Score=52.86 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=43.8
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
.+.|...|+.+|...|..||. .|..||..|..| |+..|+.+|+.+.+|+
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGR-------TDnqIKNRWnslLKKk 115 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGR-------TDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCC-------CHHHHHHHHHHHHHHH
Confidence 568999999999999999997 699999999877 6889999999887776
No 65
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.86 E-value=0.3 Score=52.48 Aligned_cols=46 Identities=33% Similarity=0.523 Sum_probs=41.1
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
+...|+--||+||.-|+--.|++||.-||.=|=++ |-+.|+-.|.-
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtK-------tkeeck~hy~k 116 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGTK-------TKEECKEHYLK 116 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHccc-------chHHHHHHHHH
Confidence 35679999999999999999999999999988755 78999998864
No 66
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=0.17 Score=59.69 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=58.1
Q ss_pred cccccccccCCccc-----cchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHH--HHHHHHHhhhccCCCC
Q 012054 284 ESAFVFRHRLDSQK-----RGRYKKMILRHMDVDTIRSKISSHSIMSIKELFR--DLLLLANNAVVFYSKN 347 (472)
Q Consensus 284 k~A~~F~~PVd~qe-----~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~r--DL~LMf~NA~~YN~p~ 347 (472)
.....|.+|++... .++|-.+|+.+||+...-.+++.+.|.++.+|.. ++.|||.|++.||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 44668999999652 5699999999999999999999999999999999 9999999999999976
No 67
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.71 E-value=0.29 Score=53.15 Aligned_cols=45 Identities=33% Similarity=0.536 Sum_probs=39.8
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
...|.--|.|||.-+|-++| ++|+.||.-|.++ |++.|-.+|-.|
T Consensus 279 dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtK-------t~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTK-------TKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCC-------CHHHHHHHHHcC
Confidence 35799999999999999999 5899999999977 889999999654
No 68
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=88.89 E-value=0.8 Score=45.22 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=53.4
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHh-hccC-----------CC----CCCCHHh----H------HHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTV-----------CP----YTVTPEM----C------KAHYEDLQ 59 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~-~r~~-----------~~----~~~t~~~----C------~~k~~~l~ 59 (472)
.+.|..-|+.+|..=|..||.++|..||.-+- .|+. .| -.||++. + +.|+..|.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA 88 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIA 88 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHH
Confidence 58999999999999999999999999999998 7875 22 3677762 2 34677777
Q ss_pred HHhcCC------chHHHHHHH
Q 012054 60 QRFYGC------KAWFEELRK 74 (472)
Q Consensus 60 ~r~~~~------~~w~eeLrk 74 (472)
+++.|. +.|--.|+|
T Consensus 89 ~~LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 89 GRLPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred hhCCCcCHHHHHHHHHHHHHH
Confidence 777774 468666633
No 69
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.49 E-value=0.25 Score=56.79 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=51.6
Q ss_pred hcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 012054 305 ILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVLKTM 365 (472)
Q Consensus 305 IK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~lf~k~m 365 (472)
---|.-|+.|+.+|++.+|++.+.|..|+-.|..||-+|++.+-.+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3457788999999999999999999999999999999999998866666666666665543
No 70
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=87.05 E-value=1.9 Score=41.32 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=39.2
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHH-HhhccCCCCCCCHHhHHHHHH-HHHHHhcC
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAE-LRARTVCPYTVTPEMCKAHYE-DLQQRFYG 64 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e-~~~r~~~~~~~t~~~C~~k~~-~l~~r~~~ 64 (472)
....|..-+++||+..|+||+...=..+++= .-.. -..-|+..|+.+|. -|..+|..
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~---~L~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD---ALKRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH---HHhhhHHHHHhHHHHHHHHHHHH
Confidence 3568999999999999999998765555441 1111 11348999999994 34445643
No 71
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=82.98 E-value=1.5 Score=46.01 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=39.8
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYE 56 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (472)
+.+.||..|||||.-+.---|-++|.-||.-+-+| +-+.|+..|.
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr-------~kee~k~Hyl 106 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSR-------AKEEIKSHYL 106 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhh-------hhHHHHHHHH
Confidence 45789999999999999999999999999999887 5678887764
No 72
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=82.00 E-value=1.3 Score=48.74 Aligned_cols=49 Identities=33% Similarity=0.523 Sum_probs=42.1
Q ss_pred CCcccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 2 GAEVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 2 ~~~~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
|......|.--|.|||-.||-.|| .+|..||.=|.+| |.+.|-.||-.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~k-------s~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTK-------SQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCC-------CHHHHHHHHHhc
Confidence 445667899999999999999999 5899999988855 889999999654
No 73
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=77.25 E-value=5.5 Score=31.52 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=36.6
Q ss_pred chhhhhHHHHHHHHhhhcccCCh---hHHHHHHhhccCCCCCCCHHhHHHHHH
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDW---NLVAAELRARTVCPYTVTPEMCKAHYE 56 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w---~~va~e~~~r~~~~~~~t~~~C~~k~~ 56 (472)
..|..-|..++..||..+|.++| ..|+..+.. ..+|+..|+..+.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~-----~~lT~~qV~SH~Q 51 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV-----DGLTRDQVASHLQ 51 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 47999999999999999999999 888776543 2568888886543
No 74
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=76.61 E-value=3.8 Score=33.97 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=30.3
Q ss_pred ChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 28 DWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 28 ~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
.|..|+.+|..+.. ..+|...|+.||..|++.|.
T Consensus 33 ~w~~i~~~~~~~~~--~~~t~~qlknk~~~lk~~y~ 66 (96)
T PF12776_consen 33 GWNNIAEEFNEKTG--LNYTKKQLKNKWKTLKKDYR 66 (96)
T ss_pred HHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHH
Confidence 59999999999744 46799999999999999997
No 75
>smart00595 MADF subfamily of SANT domain.
Probab=75.42 E-value=3.3 Score=34.01 Aligned_cols=29 Identities=31% Similarity=0.732 Sum_probs=26.6
Q ss_pred CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 27 RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 27 ~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
..|..||.+|.. |++.|+.||..|+.+|.
T Consensus 28 ~aW~~Ia~~l~~--------~~~~~~~kw~~LR~~y~ 56 (89)
T smart00595 28 KAWEEIAEELGL--------SVEECKKRWKNLRDRYR 56 (89)
T ss_pred HHHHHHHHHHCc--------CHHHHHHHHHHHHHHHH
Confidence 389999999976 99999999999999995
No 76
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=74.57 E-value=3.1 Score=46.04 Aligned_cols=47 Identities=32% Similarity=0.589 Sum_probs=41.9
Q ss_pred cccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 4 ~~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
-.++.|..-|+-+|-.||..+|+.-|.-|++-|..- |+..|+++|+.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~k-------t~rqC~~rw~e 51 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRK-------TARQCKARWEE 51 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhc-------chhHHHHHHHH
Confidence 457789999999999999999999999999988654 88999999985
No 77
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=68.29 E-value=6.8 Score=31.97 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 012054 312 DTIRSKISSHSIMSIKELFRDLLLLAN 338 (472)
Q Consensus 312 sTIKrKLesg~Y~S~~EF~rDL~LMf~ 338 (472)
..|+..+++|.|.|.+|+++|.+.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998775
No 78
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=66.25 E-value=6.1 Score=44.96 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=47.1
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcC
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (472)
.+.|..-||--|..+|..||.+.|..+|++|-.|+. ---..|+.+|-.+.-|++.
T Consensus 412 ~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~----~q~~rrR~R~~~~k~rl~~ 466 (939)
T KOG0049|consen 412 VERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS----RQLRRRRLRLIAAKLRLAA 466 (939)
T ss_pred cCceeecchHHHHHHHHHHccchHHHHHHHccccch----hHHHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999999999999865 2235788888888888875
No 79
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=60.12 E-value=21 Score=28.69 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHhhhc-----c-----------cCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 8 VWGTWEELLLGGAVLRH-----G-----------TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 8 ~wgt~eellL~~aV~rh-----g-----------~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
-|..-|..+|..-|..| | ...|..|+.+|-+..+. ..|+..|+.+|.+|..+
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~--~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPG--KRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHH
Confidence 46677888888877777 3 35699999999996553 67999999999999865
No 80
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=59.80 E-value=18 Score=37.29 Aligned_cols=55 Identities=31% Similarity=0.524 Sum_probs=36.7
Q ss_pred chhhhhHHHHHHHHh------hhcc---cCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcC
Q 012054 7 EVWGTWEELLLGGAV------LRHG---TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (472)
Q Consensus 7 ~~wgt~eellL~~aV------~rhg---~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (472)
..|..=|=++|..|- ++.| ...|..||..++.. -+.-|+..|+.||+.|..||-.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~---g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL---GYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHH
Confidence 345555555554432 2333 46799999944433 2345999999999999999953
No 81
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=58.56 E-value=6.4 Score=38.91 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=32.7
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCC
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVC 42 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~ 42 (472)
.+.|+--||.||..|-..||-+ |..||..|..||..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNr-Ws~IA~~LPGRTDN 97 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNR-WSLIAGRLPGRTDN 97 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcH-HHHHHhhCCCcCHH
Confidence 3578899999999999999999 99999999999763
No 82
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.70 E-value=9.4 Score=30.44 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 76 RMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 76 Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
||.||-.+|.+-+.+|+++++..+.|+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ 29 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISES 29 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999887
No 83
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=53.73 E-value=16 Score=30.76 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 012054 312 DTIRSKISSHSIMSIKELFRDLLLLAN 338 (472)
Q Consensus 312 sTIKrKLesg~Y~S~~EF~rDL~LMf~ 338 (472)
.-|+..+.+|.|.|..|+++|.+.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999777664
No 84
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=53.43 E-value=1.8 Score=48.83 Aligned_cols=72 Identities=10% Similarity=-0.059 Sum_probs=65.1
Q ss_pred cccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHH
Q 012054 288 VFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRT 359 (472)
Q Consensus 288 ~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~ 359 (472)
.|..-.+....+.|+.+++-||-++...+++..+.|.....|..|+.++|-|+..|+....-++..+..|.+
T Consensus 215 r~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 215 RLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred ccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 344455566889999999999999999999999999999999999999999999999999999999988864
No 85
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=51.87 E-value=5.3 Score=46.59 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=67.0
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCC--------------C--------
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSI--------------M-------- 324 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y--------------~-------- 324 (472)
-..+.-|+.|+++| --++|.+..|.|..+..-|.+|+|++..|.+..| .
T Consensus 73 hI~kdhll~i~kql---------v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~ 143 (1113)
T KOG0644|consen 73 HIAKDHLLQILKQL---------VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVR 143 (1113)
T ss_pred ccchHHHHHHHHHh---------ccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccc
Confidence 34567788888775 3467778889999999999999999999998766 2
Q ss_pred --CHH------HHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 012054 325 --SIK------ELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIV 361 (472)
Q Consensus 325 --S~~------EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~lf 361 (472)
+.. +..+-..+|-.||..|+.|+| .++-+..+.++.
T Consensus 144 ~~sl~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 144 GVSLRSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred cceeccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHHH
Confidence 223 366778899999999999999 777777766653
No 86
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=47.32 E-value=22 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.646 Sum_probs=25.6
Q ss_pred CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 27 RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 27 ~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
..|..||.+|... +++..|+.++..|..+|.
T Consensus 27 ~aw~~Ia~~l~~~------~~~~~~~~~w~~Lr~~y~ 57 (85)
T PF10545_consen 27 EAWQEIARELGKE------FSVDDCKKRWKNLRDRYR 57 (85)
T ss_pred HHHHHHHHHHccc------hhHHHHHHHHHHHHHHHH
Confidence 4699999999443 568889999999999885
No 87
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=47.20 E-value=33 Score=30.95 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=28.8
Q ss_pred chhhhhHHHHHHHHhhhccc---CChhHHHHHHhhc
Q 012054 7 EVWGTWEELLLGGAVLRHGT---RDWNLVAAELRAR 39 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~---~~w~~va~e~~~r 39 (472)
-.|...|+=.|.|.|++||. +.|+.|-.+++.-
T Consensus 50 k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~ 85 (118)
T PF09111_consen 50 KVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRES 85 (118)
T ss_dssp SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-
T ss_pred CCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 56778899999999999999 9999999999876
No 88
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=44.93 E-value=29 Score=39.31 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=43.5
Q ss_pred ccchhhhhHHHHHHHHhh------------------hcccC-------ChhHHHHHHhhccCCCCCCCHHhHHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVL------------------RHGTR-------DWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~------------------rhg~~-------~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (472)
-...|.--||-+|-.+|. ||--. +|..|+.-|++| +...|+.||..|-
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR-------~~~qCr~Kw~kl~ 507 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTR-------SRIQCRYKWYKLT 507 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCC-------CcchHHHHHHHHH
Confidence 456788888888888883 55444 699999988888 5568999999999
Q ss_pred HHhcCC
Q 012054 60 QRFYGC 65 (472)
Q Consensus 60 ~r~~~~ 65 (472)
-+++..
T Consensus 508 ~~~s~n 513 (607)
T KOG0051|consen 508 TSPSFN 513 (607)
T ss_pred hhHHhh
Confidence 998863
No 89
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=42.01 E-value=80 Score=27.43 Aligned_cols=58 Identities=12% Similarity=0.317 Sum_probs=44.2
Q ss_pred ccchhhhhHHHHHHHHhh----hccc---CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcC
Q 012054 5 VIEVWGTWEELLLGGAVL----RHGT---RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~----rhg~---~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (472)
+...|..-+|+.|-.++. .||+ .+|+.+-.-|+..- ..-+|...=..|.+-|++||..
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l--~~~~s~~Ql~~KirrLK~Ky~~ 67 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSL--SFDVSKNQLYDKIRRLKKKYRN 67 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHH
Confidence 566899999999988875 4585 47777776666652 2347888888899999999964
No 90
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.15 E-value=28 Score=35.14 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 74 KQRMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 74 k~Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
|+|++||-.||-+-..-|.+|+.+|+.|+++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999987
No 91
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=37.54 E-value=23 Score=33.45 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012054 68 WFEELRKQRMAELKRAL 84 (472)
Q Consensus 68 w~eeLrk~Rvaelrr~~ 84 (472)
-++.+|++||+||+.++
T Consensus 39 ~l~~~R~~R~~el~~~~ 55 (175)
T cd02987 39 FLQQYREQRMQEMHAKL 55 (175)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 68999999999999983
No 92
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=33.25 E-value=39 Score=32.87 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 293 LDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 293 Vd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
|+.+...+|..+=-..+|...|-+|++.+-|.. +||.+-+.-+=.||..|....
T Consensus 18 vd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~-~E~e~A~~W~~~~~~~g~d~n 71 (181)
T PF07882_consen 18 VDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDE-EEFEKALAWVKENCKEGDDKN 71 (181)
T ss_dssp --HHHHHHCT--EEEEE-THHHHHHHHCT-S-H-HHHHHHHHHHHHHSEE---TS
T ss_pred cCHHHHHHHhCCCceeecHHHHHHHHHccCCCH-HHHHHHHHHHHHhCCcCCCCC
Confidence 444555678888889999999999999987765 899999999999999887755
No 93
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.72 E-value=52 Score=31.77 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhhhcC
Q 012054 70 EELRKQRMAELKRALELSENSIGSLESKLETLKAERGD 107 (472)
Q Consensus 70 eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~er~~ 107 (472)
-.-++.++++|..+++.....|..|+.+|+.++.+|..
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34577889999999999999999999999999998875
No 94
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.11 E-value=50 Score=27.03 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhhhcC
Q 012054 68 WFEELRKQRMAELKRALELSENSIGSLESKLETLKAERGD 107 (472)
Q Consensus 68 w~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~er~~ 107 (472)
--|+|-=+=|+||- .-|+-||..|++|++|+.+
T Consensus 18 ~~d~LsllsV~El~-------eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 18 GNDALSLLSVAELE-------ERIALLQAEIERLKAELAK 50 (65)
T ss_pred chhHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 34557778888874 4589999999999999764
No 95
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=31.32 E-value=19 Score=26.19 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhhhchhhhhhhh
Q 012054 73 RKQRMAELKRALELSENSIGSLESKL 98 (472)
Q Consensus 73 rk~Rvaelrr~~~~~d~SIgsLqskv 98 (472)
.+++|++||+.|...++.+-|=--|-
T Consensus 2 ~sltV~~Lk~iL~~~~I~~ps~AkKa 27 (35)
T PF12949_consen 2 KSLTVAQLKRILDEHGIEFPSNAKKA 27 (35)
T ss_dssp TT--SHHHHHHHHHHT---SSS--SH
T ss_pred CcCcHHHHHHHHHHcCCCCCCCCCHH
Confidence 46899999999999998876644443
No 96
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.23 E-value=77 Score=24.28 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 69 FEELRKQRMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 69 ~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
+.+=+|+++.+|..+|......+-.|+.+|..|+.|
T Consensus 19 ~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 19 SRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345577888899999999999999999999999865
No 97
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.04 E-value=45 Score=32.11 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012054 68 WFEELRKQRMAELKRAL 84 (472)
Q Consensus 68 w~eeLrk~Rvaelrr~~ 84 (472)
-++++|++||+||+++-
T Consensus 60 ~Le~yR~kRl~el~~~~ 76 (192)
T cd02988 60 FLEEYRRKRLAEMKALA 76 (192)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999999999863
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.57 E-value=1.2e+02 Score=25.17 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhhhc
Q 012054 55 YEDLQQRFYGCKAWFEELRKQRMAELKRALELSENSIGSLESKLETLKAERG 106 (472)
Q Consensus 55 ~~~l~~r~~~~~~w~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~er~ 106 (472)
|..|..||.....=+..| +..|+||+.+........-.|+...++|+.++.
T Consensus 6 l~~LE~ki~~aveti~~L-q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALL-QMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 667777776432223333 467899999988888999999999999998864
No 99
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=27.51 E-value=58 Score=25.40 Aligned_cols=12 Identities=42% Similarity=1.030 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHH
Q 012054 49 EMCKAHYEDLQQ 60 (472)
Q Consensus 49 ~~C~~k~~~l~~ 60 (472)
++|+.||.+|..
T Consensus 9 E~Cr~kfd~l~~ 20 (49)
T smart00586 9 ENCREKYDDLET 20 (49)
T ss_pred ccHhHHHhhHHH
Confidence 689999999964
No 100
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.98 E-value=57 Score=31.52 Aligned_cols=56 Identities=18% Similarity=0.450 Sum_probs=35.9
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
.++|.---+..|-.+|.-||.+-|..|..--+--..+ ..|..+.=+--|-+++.||
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiN-EPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIIN-EPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeec-ccccccccccchHHHHHHH
Confidence 4689888888888889999999999765433222222 2355555344445555554
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.66 E-value=1.1e+02 Score=31.21 Aligned_cols=49 Identities=33% Similarity=0.497 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 55 YEDLQQRFYGCKAWFEELRKQRMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 55 ~~~l~~r~~~~~~w~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
|-||+++|..|+.=|+||-+-- .||+.+++.-+.-.-.+|..+|+|+-|
T Consensus 130 ~~d~ke~~ee~kekl~E~~~Ek-eeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEK-EELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666666655432 345555555444444445555544443
No 102
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.61 E-value=1.1e+02 Score=28.22 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCch-----------HHHHHHHH------HHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 54 HYEDLQQRFYGCKA-----------WFEELRKQ------RMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 54 k~~~l~~r~~~~~~-----------w~eeLrk~------Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
+-.+|+++|..... =+.|+|.+ -|.+|..+|..-|..|..|..+++.+...
T Consensus 56 ~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 56 RLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888886432 33454443 57889999999999999999998887665
No 103
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=23.84 E-value=1.2e+02 Score=30.27 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhchhh
Q 012054 50 MCKAHYEDLQQRFYGCKAWFEELRKQRMAELKRALELSENSIGS 93 (472)
Q Consensus 50 ~C~~k~~~l~~r~~~~~~w~eeLrk~Rvaelrr~~~~~d~SIgs 93 (472)
.--+++.-|-.+|.--.+|+.-++++=|.||++++|+-...|+-
T Consensus 21 vL~~Rpeilye~l~kL~pwq~latk~dve~l~~e~E~~~k~l~d 64 (231)
T COG5493 21 VLTQRPEILYEVLAKLTPWQQLATKQDVEELRKETEQRQKELAD 64 (231)
T ss_pred HHHhChHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666668999999999999999999999888885
No 104
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.85 E-value=1.1e+02 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhhchhhh------hhhhHHHHhhh
Q 012054 74 KQRMAELKRALELSENSIGSL------ESKLETLKAER 105 (472)
Q Consensus 74 k~Rvaelrr~~~~~d~SIgsL------qskvk~L~~er 105 (472)
++++|.||.|-+.+|.+|--+ .+.|.+|+.-+
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKK 47 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKK 47 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 478899999999999998765 34666666553
No 105
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.60 E-value=2e+02 Score=30.07 Aligned_cols=62 Identities=31% Similarity=0.428 Sum_probs=39.4
Q ss_pred CCHHhHHHHHHHHHHHhcC-----CchHHHHHHH--------HHHHHHHHHH-------------------------Hhh
Q 012054 46 VTPEMCKAHYEDLQQRFYG-----CKAWFEELRK--------QRMAELKRAL-------------------------ELS 87 (472)
Q Consensus 46 ~t~~~C~~k~~~l~~r~~~-----~~~w~eeLrk--------~Rvaelrr~~-------------------------~~~ 87 (472)
++...-+.|-..|+.++.- |...++-+++ +|||||=+++ .-+
T Consensus 35 lkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLk 114 (291)
T KOG4466|consen 35 LKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLK 114 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777763 3333333332 2455554432 234
Q ss_pred hhchhhhhhhhHHHHhhhcC
Q 012054 88 ENSIGSLESKLETLKAERGD 107 (472)
Q Consensus 88 d~SIgsLqskvk~L~~er~~ 107 (472)
|.-|+.|+.|+++|++||.-
T Consensus 115 e~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 115 ENLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56699999999999999863
No 106
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=21.35 E-value=1.2e+02 Score=25.52 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHhhhhchhhhh
Q 012054 51 CKAHYEDLQQRFYG--CKAWFEELRKQRMAELKRALELSENSIGSLE 95 (472)
Q Consensus 51 C~~k~~~l~~r~~~--~~~w~eeLrk~Rvaelrr~~~~~d~SIgsLq 95 (472)
|..--..|+|+|.. +..-.+-|+.+|+.+.++.|...+.+|-.+-
T Consensus 31 ~~~S~~~l~r~f~~~~g~s~~~~i~~~Rl~~a~~~L~~~~~~i~~iA 77 (107)
T PRK10219 31 SGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIA 77 (107)
T ss_pred HCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 33334456666553 2345566777888888888888777765443
Done!