Query 012054
Match_columns 472
No_of_seqs 185 out of 1121
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 99.9 3.6E-27 1.2E-31 204.7 14.4 105 267-371 12-116 (117)
2 3d7c_A General control of amin 99.9 5E-27 1.7E-31 202.6 12.5 101 268-368 7-107 (112)
3 3mb3_A PH-interacting protein; 99.9 8.6E-27 2.9E-31 207.2 12.4 106 267-372 20-126 (135)
4 3q2e_A Bromodomain and WD repe 99.9 1E-26 3.6E-31 203.8 12.6 106 267-372 9-115 (123)
5 1e6i_A Transcriptional activat 99.9 9.5E-27 3.3E-31 203.9 12.3 102 267-368 12-113 (121)
6 2dat_A Possible global transcr 99.9 1.3E-26 4.3E-31 203.5 12.9 102 267-368 12-119 (123)
7 3nxb_A CAT eye syndrome critic 99.9 9.3E-27 3.2E-31 201.9 11.5 100 268-367 16-115 (116)
8 2yyn_A Transcription intermedi 99.9 1.7E-26 6E-31 205.9 13.6 105 267-372 19-125 (135)
9 2d9e_A Peregrin; four-helix bu 99.9 1.7E-26 5.7E-31 202.6 12.1 103 268-370 7-109 (121)
10 2i7k_A Bromodomain-containing 99.9 2.2E-26 7.5E-31 201.1 12.4 105 268-372 8-112 (117)
11 3iu5_A Protein polybromo-1; PB 99.9 3.6E-26 1.2E-30 198.4 13.2 105 267-371 4-114 (116)
12 3mb4_A Protein polybromo-1; PB 99.9 3.8E-26 1.3E-30 200.5 12.9 104 266-369 13-122 (124)
13 2oss_A HUNK1 protein, bromodom 99.9 5E-26 1.7E-30 201.1 13.0 99 270-368 23-123 (127)
14 3p1f_A CREB-binding protein; s 99.9 3.8E-26 1.3E-30 198.8 11.9 103 269-371 12-117 (119)
15 2ouo_A HUNK1 protein, bromodom 99.9 3.6E-26 1.2E-30 202.7 11.6 101 268-368 22-127 (130)
16 2grc_A Probable global transcr 99.9 5.5E-26 1.9E-30 201.1 12.5 106 267-372 10-122 (129)
17 3jvl_A Bromodomain-containing 99.9 3.4E-26 1.2E-30 199.4 10.4 104 267-370 8-116 (120)
18 3hme_A Bromodomain-containing 99.9 5.3E-26 1.8E-30 199.7 11.6 102 267-368 12-113 (123)
19 3ljw_A Protein polybromo-1; al 99.9 7.8E-26 2.7E-30 197.5 12.1 102 267-368 7-114 (120)
20 3mqm_A Probable histone-lysine 99.9 8.4E-26 2.9E-30 198.6 11.7 103 269-371 10-118 (126)
21 3rcw_A Bromodomain-containing 99.9 1.2E-25 4E-30 199.9 12.5 105 267-371 12-116 (135)
22 3fkm_X Signaling protein; brom 99.9 8.8E-26 3E-30 208.0 11.8 105 264-368 17-123 (166)
23 4alg_A Bromodomain-containing 99.9 8.2E-26 2.8E-30 205.9 11.4 102 270-371 34-137 (154)
24 3k2j_A Protein polybromo-1; PB 99.9 2.2E-25 7.5E-30 198.0 12.5 104 269-372 18-127 (130)
25 2ri7_A Nucleosome-remodeling f 99.9 2.3E-25 7.9E-30 204.3 10.6 102 267-368 71-172 (174)
26 3o36_A Transcription intermedi 99.9 1.1E-24 3.8E-29 202.1 11.7 105 265-370 78-184 (184)
27 3tlp_A Protein polybromo-1; PB 99.9 1.7E-24 5.8E-29 195.5 12.5 104 269-372 25-135 (150)
28 3uv4_A Second bromodomain of h 99.9 1.2E-24 4.3E-29 199.2 11.3 100 270-369 27-131 (158)
29 3dai_A ATPase family AAA domai 99.9 3.3E-24 1.1E-28 189.8 12.8 100 270-369 12-115 (130)
30 3u5n_A E3 ubiquitin-protein li 99.9 1.6E-23 5.3E-28 198.1 12.2 107 265-372 78-204 (207)
31 2dkw_A Hypothetical protein KI 99.9 1.5E-23 5E-28 186.7 9.7 100 267-371 11-114 (131)
32 2ro1_A Transcription intermedi 99.9 1.9E-23 6.7E-28 195.9 10.1 102 267-373 75-181 (189)
33 3uv5_A Transcription initiatio 99.9 5.4E-23 1.9E-27 201.1 11.9 102 268-369 14-115 (265)
34 3uv5_A Transcription initiatio 99.9 2.1E-22 7.2E-27 197.0 11.8 99 271-369 139-238 (265)
35 3aad_A Transcription initiatio 99.9 2E-22 6.9E-27 200.0 8.1 98 270-367 49-146 (292)
36 3aad_A Transcription initiatio 99.9 7.2E-22 2.5E-26 196.1 10.3 91 279-369 181-271 (292)
37 2r0y_A Chromatin structure-rem 99.9 9.4E-22 3.2E-26 197.2 9.9 87 282-368 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 1.2E-21 4E-26 199.8 10.1 86 283-368 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 8.9E-20 3E-24 186.0 9.3 97 270-368 80-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.4E-19 4.7E-24 181.5 10.0 99 268-368 28-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 8.6E-17 2.9E-21 146.3 12.8 100 269-372 8-113 (147)
42 3lqh_A Histone-lysine N-methyl 99.6 6.2E-15 2.1E-19 138.3 9.4 91 271-372 78-168 (183)
43 2elk_A SPCC24B10.08C protein; 98.0 4.8E-06 1.6E-10 64.0 5.1 46 6-58 9-55 (58)
44 1x41_A Transcriptional adaptor 97.9 1.6E-05 5.6E-10 61.3 5.4 47 5-58 7-53 (60)
45 1w0t_A Telomeric repeat bindin 97.8 1.2E-05 4.3E-10 60.3 4.2 49 7-60 3-51 (53)
46 3sjm_A Telomeric repeat-bindin 97.8 2.2E-05 7.4E-10 61.8 4.4 50 6-60 11-60 (64)
47 1guu_A C-MYB, MYB proto-oncoge 97.7 2.2E-05 7.6E-10 58.4 3.9 46 6-58 3-48 (52)
48 2d9a_A B-MYB, MYB-related prot 97.6 4.3E-05 1.5E-09 58.6 3.6 47 5-58 7-53 (60)
49 2yus_A SWI/SNF-related matrix- 97.5 4.1E-05 1.4E-09 62.7 3.3 46 5-58 17-62 (79)
50 1gvd_A MYB proto-oncogene prot 97.5 4.2E-05 1.4E-09 57.0 3.0 45 6-57 3-47 (52)
51 1ity_A TRF1; helix-turn-helix, 97.5 8.1E-05 2.8E-09 58.7 4.5 52 5-61 9-60 (69)
52 2dim_A Cell division cycle 5-l 97.4 0.00011 3.8E-09 58.0 4.2 46 6-58 9-54 (70)
53 2cu7_A KIAA1915 protein; nucle 97.3 0.00025 8.5E-09 56.4 5.3 50 6-63 9-58 (72)
54 2din_A Cell division cycle 5-l 97.1 0.00063 2.2E-08 53.0 5.4 47 6-61 9-55 (66)
55 2yum_A ZZZ3 protein, zinc fing 97.1 0.00051 1.7E-08 54.8 4.5 49 5-60 7-60 (75)
56 2llk_A Cyclin-D-binding MYB-li 97.0 0.00031 1.1E-08 56.8 3.2 48 6-62 23-70 (73)
57 2ckx_A NGTRF1, telomere bindin 97.0 0.00067 2.3E-08 56.1 4.8 52 8-62 2-53 (83)
58 2k9n_A MYB24; R2R3 domain, DNA 97.0 0.00062 2.1E-08 57.7 4.7 44 7-57 2-45 (107)
59 2k9n_A MYB24; R2R3 domain, DNA 97.0 0.00083 2.9E-08 56.9 5.3 50 6-63 53-102 (107)
60 2ltp_A Nuclear receptor corepr 95.9 0.00017 5.7E-09 60.0 0.0 51 5-63 15-65 (89)
61 3zqc_A MYB3; transcription-DNA 96.8 0.00044 1.5E-08 60.6 2.3 47 5-58 1-47 (131)
62 2cqr_A RSGI RUH-043, DNAJ homo 96.8 0.00038 1.3E-08 56.3 1.5 51 6-63 18-71 (73)
63 1gv2_A C-MYB, MYB proto-oncoge 96.8 0.00067 2.3E-08 57.0 3.0 47 5-58 3-49 (105)
64 1h89_C C-MYB, MYB proto-oncoge 96.8 0.00029 1E-08 63.5 0.8 50 1-57 1-50 (159)
65 3osg_A MYB21; transcription-DN 96.6 0.0012 4.1E-08 57.5 3.8 51 6-64 62-112 (126)
66 3osg_A MYB21; transcription-DN 96.5 0.0015 5E-08 57.0 3.7 46 5-58 10-55 (126)
67 1gv2_A C-MYB, MYB proto-oncoge 96.5 0.001 3.5E-08 55.8 2.6 48 6-61 56-103 (105)
68 2roh_A RTBP1, telomere binding 96.4 0.0034 1.2E-07 55.4 5.3 55 5-62 30-84 (122)
69 2cjj_A Radialis; plant develop 96.4 0.0029 9.9E-08 53.3 4.6 50 6-62 8-60 (93)
70 1h8a_C AMV V-MYB, MYB transfor 96.4 0.0021 7.2E-08 55.9 3.7 47 5-58 26-72 (128)
71 2juh_A Telomere binding protei 96.2 0.0041 1.4E-07 54.9 4.6 54 5-61 16-69 (121)
72 2aje_A Telomere repeat-binding 96.2 0.0026 8.9E-08 54.8 3.2 56 5-63 12-67 (105)
73 2iw5_B Protein corest, REST co 96.0 0.0051 1.7E-07 59.6 4.4 50 6-63 133-182 (235)
74 1h8a_C AMV V-MYB, MYB transfor 95.8 0.0023 7.9E-08 55.7 1.3 48 6-61 79-126 (128)
75 2eqr_A N-COR1, N-COR, nuclear 95.8 0.0065 2.2E-07 46.9 3.6 48 4-59 10-57 (61)
76 1h89_C C-MYB, MYB proto-oncoge 95.6 0.0065 2.2E-07 54.6 3.4 46 6-58 58-103 (159)
77 1wgx_A KIAA1903 protein; MYB D 95.5 0.0071 2.4E-07 49.0 2.9 54 3-63 5-61 (73)
78 2cqq_A RSGI RUH-037, DNAJ homo 95.4 0.024 8.1E-07 45.6 5.6 51 4-62 6-59 (72)
79 3zqc_A MYB3; transcription-DNA 95.4 0.0063 2.1E-07 53.2 2.4 50 6-63 54-103 (131)
80 2ebi_A DNA binding protein GT- 94.3 0.033 1.1E-06 45.3 3.9 56 7-65 5-69 (86)
81 2xag_B REST corepressor 1; ami 89.6 0.22 7.4E-06 53.0 3.9 50 6-63 380-429 (482)
82 1ign_A Protein (RAP1); RAP1,ye 87.5 0.2 6.9E-06 48.9 1.9 47 6-59 8-59 (246)
83 2yqk_A Arginine-glutamic acid 83.5 1.1 3.9E-05 34.5 4.1 47 6-60 9-56 (63)
84 4b4c_A Chromodomain-helicase-D 81.5 0.8 2.7E-05 42.3 3.0 31 7-37 135-165 (211)
85 1x58_A Hypothetical protein 49 78.1 3.8 0.00013 32.2 5.4 55 3-62 5-59 (62)
86 2crg_A Metastasis associated p 77.7 1.8 6.3E-05 34.1 3.5 49 4-60 6-55 (70)
87 2xb0_X Chromo domain-containin 73.2 1.7 5.9E-05 42.9 2.8 28 7-34 169-196 (270)
88 4a69_C Nuclear receptor corepr 59.2 6.7 0.00023 32.6 3.3 47 5-59 42-88 (94)
89 1zxa_A CGMP-dependent protein 45.8 20 0.00068 28.5 3.8 32 71-102 21-52 (67)
90 1ofc_X ISWI protein; nuclear p 42.4 45 0.0015 33.4 6.7 54 8-68 112-165 (304)
91 3nmd_A CGMP dependent protein 40.5 24 0.00083 28.4 3.6 34 69-102 32-67 (72)
92 3kxe_C Antitoxin protein PARD- 38.2 26 0.00091 28.8 3.6 28 312-339 16-43 (88)
93 3swk_A Vimentin; cytoskeleton, 38.0 48 0.0016 27.0 5.1 49 50-104 25-78 (86)
94 1ofc_X ISWI protein; nuclear p 36.9 38 0.0013 33.9 5.2 34 6-39 212-248 (304)
95 1yyb_A Programmed cell death p 36.6 23 0.00079 23.3 2.4 15 69-83 7-21 (27)
96 4eef_G F-HB80.4, designed hema 32.9 5.9 0.0002 32.2 -1.1 45 6-57 20-67 (74)
97 2y9y_A Imitation switch protei 31.9 50 0.0017 34.0 5.2 34 6-39 228-264 (374)
98 1t2k_D Cyclic-AMP-dependent tr 31.3 47 0.0016 25.1 3.8 34 71-104 18-51 (61)
99 3ol1_A Vimentin; structural ge 30.3 80 0.0028 27.0 5.6 49 50-104 45-98 (119)
100 3trt_A Vimentin; cytoskeleton, 27.9 1.4E+02 0.0048 23.1 6.2 40 50-92 13-52 (77)
101 3htk_A Structural maintenance 27.1 97 0.0033 22.9 4.9 51 50-101 9-59 (60)
102 1jnm_A Proto-oncogene C-JUN; B 26.2 65 0.0022 24.4 3.8 33 73-105 20-52 (62)
103 1zrj_A E1B-55KDA-associated pr 25.9 34 0.0012 25.5 2.1 35 72-106 10-45 (50)
104 2do1_A Nuclear protein HCC-1; 25.5 19 0.00066 27.4 0.7 33 72-104 10-43 (55)
105 1ug2_A 2610100B20RIK gene prod 24.6 1.4E+02 0.0049 25.1 5.8 55 3-64 30-86 (95)
106 1gmj_A ATPase inhibitor; coile 22.7 93 0.0032 25.7 4.2 35 70-104 40-80 (84)
107 3qh9_A Liprin-beta-2; coiled-c 21.9 65 0.0022 26.5 3.1 32 59-90 15-48 (81)
108 1ci6_A Transcription factor AT 21.8 88 0.003 24.0 3.8 37 68-104 16-52 (63)
109 2kvu_A MKL/myocardin-like prot 21.5 44 0.0015 27.1 2.1 37 71-107 25-62 (75)
110 1zhc_A Hypothetical protein HP 21.1 1.6E+02 0.0054 23.4 5.3 49 55-105 5-53 (76)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=3.6e-27 Score=204.69 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=100.7
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
....+.|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||++
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNED 91 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 347 NTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
+|.+|.+|..|+++|.+.|.+++..
T Consensus 92 ~s~~~~~A~~L~~~f~~~~~~~~~~ 116 (117)
T 3g0l_A 92 DSDIGRAGHNMRKYFEKKWTDTFKV 116 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998754
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=5e-27 Score=202.63 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
.....|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||.|||+||+.||+++
T Consensus 7 ~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 86 (112)
T 3d7c_A 7 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPD 86 (112)
T ss_dssp HHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 012054 348 TREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k~ 368 (472)
|.+|.+|..|+++|.+.|.++
T Consensus 87 s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 87 SEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999864
No 3
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=8.6e-27 Score=207.16 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=102.2
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
..+.+.|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|..||.|||+||+.||++
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPS 99 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 347 -NTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 347 -~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
++.+|.+|..|+++|...|.+++++.
T Consensus 100 ~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 100 KRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 4
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=203.84 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=101.9
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
..+.+.|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|..||.|||.||+.||++
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 347 -NTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 347 -~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
++.+|.+|..|+++|.+.|.+++++.
T Consensus 89 ~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 89 KRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998774
No 5
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=9.5e-27 Score=203.95 Aligned_cols=102 Identities=19% Similarity=0.288 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
....+.|..||+.|+.|+.+++|..||+..++|+||++|++||||+||++||++|.|.++.+|.+||+|||+||+.||++
T Consensus 12 ~~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 12 GPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp CTTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 012054 347 NTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+|.+|.+|..|+++|.+.+.++
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999764
No 6
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=203.52 Aligned_cols=102 Identities=18% Similarity=0.322 Sum_probs=96.9
Q ss_pred cchHHHHHHHHHHHhcCc------ccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 012054 267 KDSIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 340 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k------~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA 340 (472)
....+.|..||+.|+.++ .+++|..||+..++|+||++|++||||+||++||++|.|.++++|.+||+|||+||
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 91 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNA 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 446789999999999986 58999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 012054 341 VVFYSKNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 341 ~~YN~p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+.||++++.+|.+|..|+++|.+.++++
T Consensus 92 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 92 QTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988864
No 7
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=9.3e-27 Score=201.87 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=96.9
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
...+.|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|..||.|||.||+.||+++
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 95 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGES 95 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 012054 348 TREHKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k 367 (472)
|.+|.+|..|+++|.+.|.+
T Consensus 96 s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 96 SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 8
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=205.93 Aligned_cols=105 Identities=13% Similarity=0.232 Sum_probs=100.5
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhc--CCCCCHHHHHHHHHHHHHhhhccC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS--HSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLes--g~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
....+.|..||..|+.|+.+++|..||+. ++|+||++|++||||+||++||++ |.|.++++|.+||+|||+||+.||
T Consensus 19 p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN 97 (135)
T 2yyn_A 19 PIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFN 97 (135)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44678999999999999999999999998 799999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 345 SKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
+++|.+|.+|..|+++|.+.|.+++++.
T Consensus 98 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 98 EPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999886
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=202.57 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
+....|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||+||+.||+++
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Q 012054 348 TREHKSAFLLRTIVLKTMRQYFK 370 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k~l~ 370 (472)
|.+|.+|..|++.|...|.+...
T Consensus 87 s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 87 TIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888876643
No 10
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=201.08 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
+..+.|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||+++
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 348 TREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
|.+|.+|..|++.|.+.+...+-.+
T Consensus 88 s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 88 TIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 11
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=198.38 Aligned_cols=105 Identities=20% Similarity=0.324 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHhcCc------ccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 012054 267 KDSIDDIKGVFESVAQNE------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 340 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k------~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA 340 (472)
....+.|..||+.|..++ .+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 346789999999999875 59999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 341 VVFYSKNTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 341 ~~YN~p~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
+.||+++|.+|.+|..|+++|.+.+.+++..
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988764
No 12
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=3.8e-26 Score=200.54 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=98.4
Q ss_pred CcchHHHHHHHHHHHhc------CcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q 012054 266 RKDSIDDIKGVFESVAQ------NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANN 339 (472)
Q Consensus 266 ~~~~~k~L~~IL~~I~s------~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~N 339 (472)
..+..+.|..||+.|.. ++.+++|..||+..++|+||++|++||||+||++||++|.|.++++|..||+|||+|
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999998 566799999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 012054 340 AVVFYSKNTREHKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 340 A~~YN~p~S~i~k~A~~L~~lf~k~m~k~l 369 (472)
|+.||+++|.+|.+|..|+++|.+.++++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 13
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.93 E-value=5e-26 Score=201.06 Aligned_cols=99 Identities=17% Similarity=0.268 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
...|..||+.|+.++.+++|..||+.. .+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||+++
T Consensus 23 ~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 102 (127)
T 2oss_A 23 QYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPG 102 (127)
T ss_dssp HHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445567999999999999999999975 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 012054 348 TREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k~ 368 (472)
|.+|.+|..|+++|.+.|.++
T Consensus 103 s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 103 DDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999998765
No 14
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.93 E-value=3.8e-26 Score=198.84 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhc-CcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCC
Q 012054 269 SIDDIKGVFESVAQ-NESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYS 345 (472)
Q Consensus 269 ~~k~L~~IL~~I~s-~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~ 345 (472)
-.+.|..+|..|.. ++.+++|..||+.. ++|+||++|++||||+||++||++|.|.++++|..||.|||+||+.||+
T Consensus 12 l~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (119)
T 3p1f_A 12 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 91 (119)
T ss_dssp HHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999887 77999999999988 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 346 KNTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 346 p~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
++|.+|.+|..|+++|.+.+..++..
T Consensus 92 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 92 KTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987753
No 15
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.93 E-value=3.6e-26 Score=202.74 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHHhcCcc---cccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 268 DSIDDIKGVFESVAQNES---AFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~---A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
...+.|..||+.|+.+++ +++|..||+.. ++|+||++|++||||+||++||++|.|.++++|.+||+|||+||+.
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999875 89999999986 5999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
||+++|.+|.+|..|+++|.+.|.++
T Consensus 102 yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 102 YNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999864
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=5.5e-26 Score=201.13 Aligned_cols=106 Identities=19% Similarity=0.336 Sum_probs=100.0
Q ss_pred cchHHHHHHHHHHHhcCc-------ccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q 012054 267 KDSIDDIKGVFESVAQNE-------SAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANN 339 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k-------~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~N 339 (472)
....+.|..||+.|+.++ .+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||+|||+|
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 89 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 446789999999999875 5899999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 340 AVVFYSKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 340 A~~YN~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
|+.||+++|.+|.+|..|+++|.+.+.++....
T Consensus 90 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 122 (129)
T 2grc_A 90 AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKED 122 (129)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999887654
No 17
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.93 E-value=3.4e-26 Score=199.39 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHHHhcCcc---cccccccCCccc--cchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 012054 267 KDSIDDIKGVFESVAQNES---AFVFRHRLDSQK--RGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 341 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~---A~~F~~PVd~qe--~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~ 341 (472)
....+.|..||..|..+++ +|+|..||+... +|+||++|++||||+||++||++|.|.++++|..||.|||.||+
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999887 899999999986 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 012054 342 VFYSKNTREHKSAFLLRTIVLKTMRQYFK 370 (472)
Q Consensus 342 ~YN~p~S~i~k~A~~L~~lf~k~m~k~l~ 370 (472)
.||+++|.+|.+|..|+++|.+.+.++..
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999887643
No 18
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=199.74 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
.+..+.|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||++
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 012054 347 NTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
++.+|.+|..|.+.|.+.|.+.
T Consensus 92 ~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 92 DTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp TSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 19
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=7.8e-26 Score=197.53 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhh
Q 012054 267 KDSIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNA 340 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA 340 (472)
..+.+.|..||+.|..+++ +++|.+||+..++|+||++|++||||+||++||++|.|.++++|..||.|||+||
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 86 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNA 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 4567899999999998877 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 012054 341 VVFYSKNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 341 ~~YN~p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+.||+++|.+|.+|..|+++|.+.+.++
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 87 KTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 20
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=8.4e-26 Score=198.63 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 269 SIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
-.+.|..||+.|..+++ +++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.
T Consensus 10 l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 89 (126)
T 3mqm_A 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEK 89 (126)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35788899999988754 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
||+++|.+|.+|..|+++|.+.+.+..+.
T Consensus 90 yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 90 YYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 21
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=199.88 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
......|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||++
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 347 NTREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
+|.+|.+|..|++.|.+.+++....
T Consensus 92 ~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 92 DTVFYRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877543
No 22
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=8.8e-26 Score=208.01 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=97.9
Q ss_pred CCCcchHHHHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 012054 264 SLRKDSIDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 341 (472)
Q Consensus 264 ~~~~~~~k~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~ 341 (472)
+....+.+.|..||..|+.++.+++|..||+.. .+|+||++|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999976 799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 012054 342 VFYSKNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 342 ~YN~p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
.||++++.+|.+|..|+++|.+.|.++
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998775
No 23
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.93 E-value=8.2e-26 Score=205.94 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCcccccccccCCcc--ccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQ--KRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~q--e~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
...|..||+.|+.++.+++|..||+.. ++|+||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 34 ~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 113 (154)
T 4alg_A 34 QYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPT 113 (154)
T ss_dssp HHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 345567789999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcc
Q 012054 348 TREHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
+.+|.+|..|+++|.+.|.++.+.
T Consensus 114 s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 114 DDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHCCch
Confidence 999999999999999999875433
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=198.00 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 269 SIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
-...|..||+.|...+. +++|..||+...+|+||++|++||||+||++||++|.|.++++|..||+|||.||+.
T Consensus 18 l~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (130)
T 3k2j_A 18 LYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKR 97 (130)
T ss_dssp HHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35788889999987654 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
||+++|.+|.+|..|+++|.+.+.++....
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 127 (130)
T 3k2j_A 98 YNVPNSAIYKRVLKLQQVMQAKKKELARRD 127 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999886553
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=2.3e-25 Score=204.26 Aligned_cols=102 Identities=16% Similarity=0.322 Sum_probs=97.4
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
....+.|..||..|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||++
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 150 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPS 150 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 012054 347 NTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+|.+|.+|..|+++|.++|.++
T Consensus 151 ~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 151 DSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp TSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988653
No 26
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=1.1e-24 Score=202.07 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=99.2
Q ss_pred CCcchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhc--CCCCCHHHHHHHHHHHHHhhhc
Q 012054 265 LRKDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS--HSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 265 ~~~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLes--g~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
+...+.+.|..||..|+.++.+++|..||+.+ +|+||+||++||||+||++||++ |.|.++++|.+||+|||+||++
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~ 156 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 156 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999965 89999999999999999999998 7999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMRQYFK 370 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~k~l~ 370 (472)
||++++.+|.+|..|+++|.+.|.+++|
T Consensus 157 yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 157 FNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999875
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=195.49 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHhcCcc-------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhh
Q 012054 269 SIDDIKGVFESVAQNES-------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAV 341 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~-------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~ 341 (472)
..+.|..||+.|..... +++|..||+..++|+||++|++||||+||++||++|.|.++++|..||.|||+||+
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888888887654 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 342 VFYSKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 342 ~YN~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
.||++++.+|.+|..|+++|.+.+.++.+..
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999987553
No 28
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=1.2e-24 Score=199.16 Aligned_cols=100 Identities=22% Similarity=0.355 Sum_probs=91.1
Q ss_pred HHHHHHHHHH-----HhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccC
Q 012054 270 IDDIKGVFES-----VAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 270 ~k~L~~IL~~-----I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN 344 (472)
...|..||.. |+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|..||.|||+||+.||
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3455555555 45688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Q 012054 345 SKNTREHKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m~k~l 369 (472)
++++.+|.+|..|.++|...|.++-
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887753
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=3.3e-24 Score=189.81 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
...|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||+||+.||+++++
T Consensus 12 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 91 (130)
T 3dai_A 12 RIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDP 91 (130)
T ss_dssp HHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSH
T ss_pred HHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H----HHHHHHHHHHHHHHHHHHh
Q 012054 350 E----HKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 350 i----~k~A~~L~~lf~k~m~k~l 369 (472)
+ +.+|..|++.+...+.+.+
T Consensus 92 ~~~~i~~~A~~L~~~~~~~i~~el 115 (130)
T 3dai_A 92 GDRLIRHRACALRDTAYAIIKEEL 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 7888888888888876544
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.90 E-value=1.6e-23 Score=198.07 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=101.7
Q ss_pred CCcchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhc---CCCCCHHHHHHHHHHHHHhhh
Q 012054 265 LRKDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISS---HSIMSIKELFRDLLLLANNAV 341 (472)
Q Consensus 265 ~~~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLes---g~Y~S~~EF~rDL~LMf~NA~ 341 (472)
+...+.+.|..||..|+.++.+++|..||+. ++|+||+||++||||+||++||++ |.|.++.+|.+||+|||+||+
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~ 156 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCE 156 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999999999987 799999999999999999999997 799999999999999999999
Q ss_pred ccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 342 VFYS-----------------KNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 342 ~YN~-----------------p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
+||+ +++.++.+|..|+.+|..+|.+++|+.
T Consensus 157 ~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 157 RFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 999999999999999999999999985
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=186.73 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=91.8
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCC
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p 346 (472)
......|..||+.|..++.+++|..| +|+||++|++||||+||++||++|.|.++.+|.+||.|||+||+.||++
T Consensus 11 ~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 11 RELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34567889999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCH----HHHHHHHHHHHHHHHHHHHhcc
Q 012054 347 NTR----EHKSAFLLRTIVLKTMRQYFKD 371 (472)
Q Consensus 347 ~S~----i~k~A~~L~~lf~k~m~k~l~~ 371 (472)
+|+ ++.+|..|++.|...|.+.+..
T Consensus 86 ~s~~~~~i~~~A~~L~~~~~~~l~~~l~~ 114 (131)
T 2dkw_A 86 KDPGDKIIRHRACTLKDTAHAIIAAELDP 114 (131)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 5789999999999888766644
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=195.87 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHHhcCcccccccccCCccccchhHHhhc--CCCCHHHHHHhhhcC---CCCCHHHHHHHHHHHHHhhh
Q 012054 267 KDSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMIL--RHMDVDTIRSKISSH---SIMSIKELFRDLLLLANNAV 341 (472)
Q Consensus 267 ~~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK--~PMDLsTIKrKLesg---~Y~S~~EF~rDL~LMf~NA~ 341 (472)
....+.|..||..|+.|+.+|+|.+||+ |+||+||+ +||||+||++||+++ .|.+++||.+||+|||+||+
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~ 150 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFN 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999998 78999998 799999999999999 99999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHhccCC
Q 012054 342 VFYSKNTREHKSAFLLRTIVLKTMRQYFKDNE 373 (472)
Q Consensus 342 ~YN~p~S~i~k~A~~L~~lf~k~m~k~l~~~~ 373 (472)
+|| +++.+|.+|..|+++|.++|.+++++..
T Consensus 151 ~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 151 KLT-EDKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999 5899999999999999999999998853
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=5.4e-23 Score=201.13 Aligned_cols=102 Identities=14% Similarity=0.229 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 012054 268 DSIDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKN 347 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~ 347 (472)
.....|..||+.|..++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|..||.|||+||+.||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHh
Q 012054 348 TREHKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 348 S~i~k~A~~L~~lf~k~m~k~l 369 (472)
|.+|.+|..|.++|.+.+.+..
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887753
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=2.1e-22 Score=196.95 Aligned_cols=99 Identities=22% Similarity=0.356 Sum_probs=90.8
Q ss_pred HHHHHHHH-HHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 271 DDIKGVFE-SVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 271 k~L~~IL~-~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
..|..|+. .|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|.+||.|||.||+.||+++|.
T Consensus 139 ~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~ 218 (265)
T 3uv5_A 139 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 218 (265)
T ss_dssp HHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34444443 37788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012054 350 EHKSAFLLRTIVLKTMRQYF 369 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m~k~l 369 (472)
+|.+|..|.++|.+.|.++-
T Consensus 219 ~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 219 YTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=200.01 Aligned_cols=98 Identities=14% Similarity=0.265 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 012054 270 IDDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTR 349 (472)
Q Consensus 270 ~k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~ 349 (472)
...|..||+.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|..||.|||+||+.||++++.
T Consensus 49 ~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 128 (292)
T 3aad_A 49 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHS 128 (292)
T ss_dssp HHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSH
T ss_pred HHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012054 350 EHKSAFLLRTIVLKTMRQ 367 (472)
Q Consensus 350 i~k~A~~L~~lf~k~m~k 367 (472)
+|.+|..|.++|.+.+.+
T Consensus 129 i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 129 LTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp HHHHHTHHHHTTTTTGGG
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999999999877655
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=7.2e-22 Score=196.05 Aligned_cols=91 Identities=24% Similarity=0.392 Sum_probs=86.7
Q ss_pred HHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHH
Q 012054 279 SVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLR 358 (472)
Q Consensus 279 ~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~ 358 (472)
.|+.++.+++|..||+...+|+||++|++||||+||++||++|.|.++.+|..||.|||+||+.||+++|.+|.+|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012054 359 TIVLKTMRQYF 369 (472)
Q Consensus 359 ~lf~k~m~k~l 369 (472)
++|...|..+-
T Consensus 261 ~~~~~~~~~~~ 271 (292)
T 3aad_A 261 NVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=9.4e-22 Score=197.22 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=84.5
Q ss_pred cCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 012054 282 QNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIV 361 (472)
Q Consensus 282 s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~lf 361 (472)
.|+.+++|..||+...+|+||+||++||||+||++||++|.|.++++|.+||+|||+||+.||+++|.+|.+|..|+++|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012054 362 LKTMRQY 368 (472)
Q Consensus 362 ~k~m~k~ 368 (472)
.+.|.+.
T Consensus 257 ~~~~~~~ 263 (311)
T 2r0y_A 257 NYLIQKE 263 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999884
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.85 E-value=1.2e-21 Score=199.82 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=83.7
Q ss_pred CcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 012054 283 NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTREHKSAFLLRTIVL 362 (472)
Q Consensus 283 ~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i~k~A~~L~~lf~ 362 (472)
|+.+++|..||+..++|+||+||++||||+||++||++|.|.++++|..||+|||+||+.||+++|.+|.+|..|+++|.
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012054 363 KTMRQY 368 (472)
Q Consensus 363 k~m~k~ 368 (472)
..|.+.
T Consensus 308 ~~~~~~ 313 (361)
T 2r10_A 308 YLIQKE 313 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999884
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=8.9e-20 Score=185.97 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhc--CcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCC-CHHHHHHHHHHHHHhhhccCCC
Q 012054 270 IDDIKGVFESVAQ--NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIM-SIKELFRDLLLLANNAVVFYSK 346 (472)
Q Consensus 270 ~k~L~~IL~~I~s--~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~-S~~EF~rDL~LMf~NA~~YN~p 346 (472)
...|..+|+.|.. ...+++|..||+...+||||+||++||||+||++|| +.|. ++++|..||.|||+||+.||++
T Consensus 80 ~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~ 157 (361)
T 2r10_A 80 NRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 157 (361)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCS
T ss_pred HHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 4567777777754 346899999999999999999999999999999999 4454 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 012054 347 NTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 347 ~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+|.+|.+|..|+++|.++|.+.
T Consensus 158 ~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 158 DSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988865
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.79 E-value=1.4e-19 Score=181.51 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHhc--CcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCC-CHHHHHHHHHHHHHhhhccC
Q 012054 268 DSIDDIKGVFESVAQ--NESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIM-SIKELFRDLLLLANNAVVFY 344 (472)
Q Consensus 268 ~~~k~L~~IL~~I~s--~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~-S~~EF~rDL~LMf~NA~~YN 344 (472)
.+...+..+|..+.. ...+++|.+||+...+|+||+||++||||+||++|| +.|. ++++|..||.|||+||+.||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 456666677777765 346899999999999999999999999999999999 4555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 012054 345 SKNTREHKSAFLLRTIVLKTMRQY 368 (472)
Q Consensus 345 ~p~S~i~k~A~~L~~lf~k~m~k~ 368 (472)
+++|.+|.+|..|+++|.++|.+.
T Consensus 106 ~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 106 EYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=146.29 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHhcCcc------cccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhc
Q 012054 269 SIDDIKGVFESVAQNES------AFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVV 342 (472)
Q Consensus 269 ~~k~L~~IL~~I~s~k~------A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~ 342 (472)
-...|..|++.|..+++ +.+|....+.. |+||. ++||||.+|++||+.|.|.++++|..||.|||+||..
T Consensus 8 lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~ 83 (147)
T 3iu6_A 8 IQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARR 83 (147)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678899999998764 46898877766 78998 9999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Q 012054 343 FYSKNTREHKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 343 YN~p~S~i~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
||.++|.+|.+|..|+.+|.....++.++.
T Consensus 84 yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 84 MNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999887774
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.56 E-value=6.2e-15 Score=138.29 Aligned_cols=91 Identities=12% Similarity=0.216 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCcccccccccCCccccchhHHhhcCCCCHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhhccCCCCCHH
Q 012054 271 DDIKGVFESVAQNESAFVFRHRLDSQKRGRYKKMILRHMDVDTIRSKISSHSIMSIKELFRDLLLLANNAVVFYSKNTRE 350 (472)
Q Consensus 271 k~L~~IL~~I~s~k~A~~F~~PVd~qe~PdY~~IIK~PMDLsTIKrKLesg~Y~S~~EF~rDL~LMf~NA~~YN~p~S~i 350 (472)
..|..||+.|..++.+++|... . ++.||||.||++||++|.|.|+.+|..||.|||+||+.||.+++.+
T Consensus 78 ~~l~~vl~~L~~~~~s~~~~~y---------~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~ 146 (183)
T 3lqh_A 78 ISLKQVLTALLNSRTTSHLLRY---------R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEI 146 (183)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTC---------C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhccccHhhhhh---------h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhh
Confidence 3578899999999999999773 2 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 012054 351 HKSAFLLRTIVLKTMRQYFKDN 372 (472)
Q Consensus 351 ~k~A~~L~~lf~k~m~k~l~~~ 372 (472)
..++..|+.+|.++|.+.+|-.
T Consensus 147 ~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 147 KKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhhhhHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999875
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.04 E-value=4.8e-06 Score=63.99 Aligned_cols=46 Identities=41% Similarity=0.584 Sum_probs=41.6
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHh-hccCCCCCCCHHhHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELR-ARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~-~r~~~~~~~t~~~C~~k~~~l 58 (472)
...|+.-|+.+|..||.+||..+|..||..|. .| |+..|+.+|..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~R-------t~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNAR-------TKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSC-------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCC-------CHHHHHHHHHHH
Confidence 46799999999999999999999999999997 66 899999999753
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.87 E-value=1.6e-05 Score=61.26 Aligned_cols=47 Identities=32% Similarity=0.516 Sum_probs=42.3
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
....|+.-|+.+|..||..||..+|..||..|..| |+..|+.+|..+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~r~~~~ 53 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTK-------TKEECEKHYMKY 53 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTS-------CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCC-------CHHHHHHHHHHH
Confidence 45689999999999999999999999999999766 889999999754
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.85 E-value=1.2e-05 Score=60.29 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=42.6
Q ss_pred chhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHH
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQ 60 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (472)
..|+.-|+.+|..+|..||..+|..||..+.. ...|+..|+.+|..|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~-----~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF-----NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCC-----SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-----CCCCHHHHHHHHHHHHc
Confidence 57999999999999999999999999999851 13489999999998864
No 46
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.76 E-value=2.2e-05 Score=61.77 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=42.7
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQ 60 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (472)
...|..-|+-+|..+|.+||..+|..||..+. ....|+..|+.+|+.|.+
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYP-----FVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC-----CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcC-----CCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999999998753 123599999999998864
No 47
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.73 E-value=2.2e-05 Score=58.44 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=41.1
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
...|..-|+.+|..+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNR-------TDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTC-------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 3579999999999999999999999999988655 889999999865
No 48
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.58 E-value=4.3e-05 Score=58.57 Aligned_cols=47 Identities=23% Similarity=0.455 Sum_probs=41.8
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
....|..-|+.+|..+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNR-------TDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSS-------CHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCC-------CHHHHHHHHHHH
Confidence 45689999999999999999999999999998655 889999999764
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.54 E-value=4.1e-05 Score=62.66 Aligned_cols=46 Identities=33% Similarity=0.480 Sum_probs=41.4
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
....|+.-|+++|..||..|| .+|..||..|.+| |+..|+.+|..|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~R-------T~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSR-------TQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSC-------CHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCC-------CHHHHHHHHHHh
Confidence 457899999999999999999 9999999999766 899999999654
No 50
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.54 E-value=4.2e-05 Score=56.98 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.4
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
...|+.-|+.+|..+|..||..+|..||..|..| |+..|+.+|..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 4679999999999999999999999999988655 88999999975
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.51 E-value=8.1e-05 Score=58.71 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=44.2
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
....|..-|+.+|..+|..||+.+|..||..|.. ...|+..|+.+|..+...
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-----~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF-----NNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCC-----SSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCc-----CCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999999999998850 134999999999987653
No 52
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=57.99 Aligned_cols=46 Identities=28% Similarity=0.591 Sum_probs=41.2
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
...|..-|+.+|..+|..||+.+|..||..|..| |+..|+.+|...
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 54 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRK-------SAKQCKARWYEW 54 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCC-------CHHHHHHHHHHH
Confidence 4679999999999999999999999999998655 889999999763
No 53
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.34 E-value=0.00025 Score=56.39 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=44.5
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
...|..-|+.+|..||..||. +|..||..|..| |+..|+.+|..+.++..
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~R-------t~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSR-------TVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSS-------CHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC-------CHHHHHHHHHHHHHHHH
Confidence 467999999999999999999 999999999877 78999999998776653
No 54
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.00063 Score=53.01 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=41.6
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
...|+.-|+.+|..+|..||. .|..||. +..| |+..|+.+|..+.+.
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gR-------t~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGR-------TAAQCLEHYEFLLDK 55 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSS-------CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCc-------CHHHHHHHHHHHhCh
Confidence 467999999999999999999 9999999 7765 889999999987654
No 55
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00051 Score=54.78 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=42.4
Q ss_pred ccchhhhhHHHHHHHHhhhccc-----CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGT-----RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQ 60 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~-----~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (472)
....|+.-|+.+|..||..||. .+|..||..|..| |+..|+.+|..+-.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~R-------t~~qcr~r~~~~l~ 60 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNR-------TAKQVASQVQKYFI 60 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSS-------CHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCC-------CHHHHHHHHHHHHH
Confidence 3568999999999999999997 8999999999776 88999999954443
No 56
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.05 E-value=0.00031 Score=56.79 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=43.4
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
...|..-|+-+|..+|..||.. |..||..| .| |+..|+.+|..|++..
T Consensus 23 k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gR-------t~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGND-WATIGAAL-GR-------SASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TS-------CHHHHHHHHHHCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CC-------CHHHHHHHHHHHHHHc
Confidence 4689999999999999999987 99999999 88 7899999999887654
No 57
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.00 E-value=0.00067 Score=56.08 Aligned_cols=52 Identities=21% Similarity=0.054 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 8 ~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
.|+.-|+-+|..+|.+||.+.|..|+..-- ......|+..|+.||+.|.++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~---~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAF---DNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHC---TTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhc---cccCCCCHHHHHHHHHHHHHhc
Confidence 599999999999999999999999998621 1123459999999999998643
No 58
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.00 E-value=0.00062 Score=57.72 Aligned_cols=44 Identities=25% Similarity=0.549 Sum_probs=39.5
Q ss_pred chhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
+.|..-|+-+|..+|..||..+|..||..|..| |+..|+.+|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITR-------NPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTS-------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCC-------CHHHHHHHHHH
Confidence 469999999999999999999999999998766 78899998865
No 59
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.97 E-value=0.00083 Score=56.91 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=44.8
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
.+.|..-|+.+|..+|..||. .|..||..|..| |+..|+.+|..|.++..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNR-------SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSS-------CHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCC-------CHHHHHHHHHHHHhhHH
Confidence 568999999999999999997 799999998766 88999999999998753
No 60
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.90 E-value=0.00017 Score=60.00 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=44.5
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
..+.|+.-|+.+|..+|..||. +|..||..|..| |+..|+.+|..+.+|+.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gR-------t~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSK-------TVSQCKNFYFNYKKRQN 65 (89)
Confidence 3467999999999999999999 799999999887 66799999988877764
No 61
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.80 E-value=0.00044 Score=60.62 Aligned_cols=47 Identities=19% Similarity=0.414 Sum_probs=41.2
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
+.+.|..-|+-+|..+|..||..+|..||..|..| |+..|+.+|...
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 47 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNR-------SPKQCRERWFNH 47 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTS-------CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCC-------CHHHHHHHHhhc
Confidence 35679999999999999999999999999888655 789999999653
No 62
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.77 E-value=0.00038 Score=56.28 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=44.3
Q ss_pred cchhhhhHHHHHHHHhhhcc---cCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHG---TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg---~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
...|+.-|+.+|-.||..|| ...|..||..|..| |+..|+.+|..|.+-++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGR-------T~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSK-------SKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSS-------CHHHHHHHHHHHHSSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCC-------CHHHHHHHHHHHHHccc
Confidence 46799999999999999999 57899999988655 89999999999976543
No 63
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.76 E-value=0.00067 Score=56.98 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=41.2
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
..+.|+.-|+-+|..+|..||..+|..||..|..| |+..|+.+|...
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCC-------CHHHHHHHHHhc
Confidence 35689999999999999999999999999988655 789999999763
No 64
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.76 E-value=0.00029 Score=63.46 Aligned_cols=50 Identities=30% Similarity=0.481 Sum_probs=6.8
Q ss_pred CCCcccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 1 MGAEVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 1 ~~~~~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
||......|+.-|+-+|..+|..||+.+|..||..|..| |+..|+.+|..
T Consensus 1 ~g~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~ 50 (159)
T 1h89_C 1 MGHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNR-------TDVQCQHRWQK 50 (159)
T ss_dssp -------------------------------------------------CHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 888889999999999999999999999999999999766 66789999875
No 65
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.63 E-value=0.0012 Score=57.53 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=44.9
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcC
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (472)
.+.|..-|+.+|..+|..|| ..|..||..|..| |+..|+.+|..|.+++.-
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gR-------t~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGR-------TDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTC-------CHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCC-------CHHHHHHHHHHHHHhcCC
Confidence 46799999999999999999 5799999877655 889999999999998853
No 66
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.54 E-value=0.0015 Score=57.02 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=40.3
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
..+.|..-|+-+|..+|.+||. +|..||..|..| |+..|+.+|...
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 55 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNR-------NARQCRDRWKNY 55 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTC-------CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC-------CHHHHHHHHhhh
Confidence 3567999999999999999999 999999987665 788999999864
No 67
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.53 E-value=0.001 Score=55.84 Aligned_cols=48 Identities=27% Similarity=0.411 Sum_probs=41.4
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
...|..-|+.+|..||..||. .|..||..|..| |+..|+.+|..|.+|
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR-------TDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTC-------CHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC-------CHHHHHHHHHHHHhc
Confidence 467999999999999999996 799999876555 899999999998766
No 68
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.41 E-value=0.0034 Score=55.45 Aligned_cols=55 Identities=22% Similarity=0.079 Sum_probs=46.0
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
....|..-|+-+|..+|.+||.+.|..|+..+-. .....|...|+.||+.|.+.-
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~---~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFE---NVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHS---SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999999999999999999997642 123569999999999998643
No 69
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.41 E-value=0.0029 Score=53.34 Aligned_cols=50 Identities=30% Similarity=0.415 Sum_probs=43.9
Q ss_pred cchhhhhHHHHHHHHhhhcc---cCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 6 IEVWGTWEELLLGGAVLRHG---TRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg---~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
...|+.-|+.+|-.||..|| ...|..||..|..| |+..|+.+|..|.+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGR-------T~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGR-------TPEEVKKHYEILVEDI 60 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTC-------CHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCC-------CHHHHHHHHHHHHHHH
Confidence 56799999999999999998 46799999999766 8999999999996553
No 70
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.38 E-value=0.0021 Score=55.91 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=41.4
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
..+.|..-|+-+|..+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR-------IGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSC-------CHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCC-------cHHHHHHHHHHh
Confidence 35679999999999999999999999999998665 788999999763
No 71
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.20 E-value=0.0041 Score=54.88 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=45.9
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
....|..-|+-+|..+|.+||.+.|..|+..+.. .....|+..|+.||+.|.+.
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~---~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD---NADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS---CCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc---ccCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999998742 12345999999999999874
No 72
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.18 E-value=0.0026 Score=54.82 Aligned_cols=56 Identities=20% Similarity=0.041 Sum_probs=45.5
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
....|..-|+-+|..+|.+||.+.|..|+..+-. .....|+..|+.||+.|.++-.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~---~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFE---DADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSS---STTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999999999874421 1135699999999999987554
No 73
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.98 E-value=0.0051 Score=59.63 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=45.3
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
...|+.-|.+++..|+..|| .+|..||.-|.+| |...|+..|+.-.+||.
T Consensus 133 s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTK-------T~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNK-------SVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSC-------CHHHHHHHHHHTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCC-------CHHHHHHHHHHHHHHhh
Confidence 45899999999999999999 6899999999888 78999999998888886
No 74
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.84 E-value=0.0023 Score=55.66 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=42.0
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQR 61 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r 61 (472)
...|+.-|+.+|..+|..||. .|..||..|..| |+..|+.+|..|.+|
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR-------TDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGGGSTTC-------CHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHHCCCC-------CHHHHHHHHHHHHhc
Confidence 467999999999999999996 799999877655 889999999988765
No 75
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.81 E-value=0.0065 Score=46.90 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=41.2
Q ss_pred cccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHH
Q 012054 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (472)
Q Consensus 4 ~~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (472)
..+..|+.-|.-||..|+..|| .+|..||..|..| |+..|...|+.-+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~r-------t~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERK-------SVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTS-------CHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCC-------CHHHHHHHHHHhc
Confidence 4568899999999999999999 6999999887766 7889998887543
No 76
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.61 E-value=0.0065 Score=54.57 Aligned_cols=46 Identities=20% Similarity=0.472 Sum_probs=40.9
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDL 58 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l 58 (472)
...|..-|+-+|..+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTC-------CHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 4689999999999999999999999999988655 889999999764
No 77
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.52 E-value=0.0071 Score=49.04 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=44.8
Q ss_pred CcccchhhhhHHHHHHHHhhhccc---CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 3 AEVIEVWGTWEELLLGGAVLRHGT---RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 3 ~~~~~~wgt~eellL~~aV~rhg~---~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
+-....|+--|+.+|-.|+.-|+. ..|+.||.-|..| |++.|..+|..|.+=|.
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gK-------T~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSR-------SPEECQRKYMENPRGKG 61 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTS-------CHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCC-------CHHHHHHHHHHHHhccc
Confidence 344567999999999999887764 5799999998877 89999999999977654
No 78
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.41 E-value=0.024 Score=45.56 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=43.6
Q ss_pred cccchhhhhHHHHHHHHhhhccc---CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 4 EVIEVWGTWEELLLGGAVLRHGT---RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 4 ~~~~~wgt~eellL~~aV~rhg~---~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
-....|..-|+-+|-.||..|+. ..|..||..| .| |++.|+.+|..|+.-.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gR-------t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GR-------SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TS-------CHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CC-------CHHHHHHHHHHHHHhc
Confidence 34567999999999999999984 5699999998 44 9999999999998764
No 79
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.39 E-value=0.0063 Score=53.25 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=42.3
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
.+.|..-|+.+|..+|..||. .|..||..|..| |+..|+.+|..+.++..
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGR-------TDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTC-------CHHHHHHHHHHTTGGGC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC-------CHHHHHHHHHHHHHHHh
Confidence 467999999999999999995 699999877665 88999999987665543
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.34 E-value=0.033 Score=45.31 Aligned_cols=56 Identities=20% Similarity=0.399 Sum_probs=43.4
Q ss_pred chhhhhHHHHHHHHhhhccc---------CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcCC
Q 012054 7 EVWGTWEELLLGGAVLRHGT---------RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGC 65 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~---------~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~ 65 (472)
..|+.-|=++|..+..=+-. .-|..||..|+..- ...|+..|+.||..|.++|-..
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G---~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG---FDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 45777777777766643222 37999999999874 3579999999999999999753
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.56 E-value=0.22 Score=52.97 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=44.1
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFY 63 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~ 63 (472)
...|+.-|-+|+..||.+||- +|..||.-|.+| |+..|+.-|..-.+||.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTK-------T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNK-------SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSC-------CHHHHHHHHHHTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCC-------CHHHHHHHHHHHHHHhC
Confidence 568999999999999999995 999999999888 78999999987677764
No 82
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=87.49 E-value=0.2 Score=48.91 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=40.3
Q ss_pred cchhhhhHHHHHHHHhhhcccCC-----hhHHHHHHhhccCCCCCCCHHhHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRD-----WNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~-----w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (472)
...|..-|+.+|.-+|.+||... |..||.-|..| |+..|+.+|+.+.
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGR-------T~nsIRnRw~~~L 59 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNH-------TGNSIRHRFRVYL 59 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTS-------CHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCC-------CHHHHHHHHHHHH
Confidence 45799999999999999999974 99999877666 8899999988743
No 83
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.49 E-value=1.1 Score=34.54 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=39.6
Q ss_pred cchhhhhHHHHHHHHhhhcccCChhHHHHH-HhhccCCCCCCCHHhHHHHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTRDWNLVAAE-LRARTVCPYTVTPEMCKAHYEDLQQ 60 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~~w~~va~e-~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (472)
...|+.-|--++-.|+..||- +|..|+.+ |..| |...|-.-|+.-+.
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~K-------t~~~~v~fYY~wKk 56 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNK-------ETGELITFYYYWKK 56 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTS-------CHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCC-------cHHHHHHHHhcccC
Confidence 468999999999999999998 89999986 6666 78899888876543
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=81.53 E-value=0.8 Score=42.33 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=25.6
Q ss_pred chhhhhHHHHHHHHhhhcccCChhHHHHHHh
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDWNLVAAELR 37 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w~~va~e~~ 37 (472)
..|+.-|+-.|-+.|++||.++|+.|-...+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~ 165 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD 165 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence 4577779999999999999999998765433
No 85
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=78.12 E-value=3.8 Score=32.17 Aligned_cols=55 Identities=15% Similarity=0.026 Sum_probs=44.2
Q ss_pred CcccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHh
Q 012054 3 AEVIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRF 62 (472)
Q Consensus 3 ~~~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~ 62 (472)
......|..-|+=.|--.|.+||- .|..|+..-. -....|.-.=+.||+.|.++=
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~----f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFP----FQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSC----CCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCC----CccCcccchHHHHHHHHHhcc
Confidence 345678999999999999999998 9999997542 122458889999999998763
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=77.72 E-value=1.8 Score=34.13 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=40.5
Q ss_pred cccchhhhhHHHHHHHHhhhcccCChhHHHHH-HhhccCCCCCCCHHhHHHHHHHHHH
Q 012054 4 EVIEVWGTWEELLLGGAVLRHGTRDWNLVAAE-LRARTVCPYTVTPEMCKAHYEDLQQ 60 (472)
Q Consensus 4 ~~~~~wgt~eellL~~aV~rhg~~~w~~va~e-~~~r~~~~~~~t~~~C~~k~~~l~~ 60 (472)
..+..|+.-|.-++-.|+..||- +|..|+.+ |.++ |...|-.-|+.-+.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~K-------t~~~~v~fYY~wKk 55 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWK-------SLTSIIEYYYMWKT 55 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSS-------CHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCC-------CHHHHHHHHHhhcC
Confidence 45678999999999999999999 89999975 6555 78899988885443
No 87
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=73.23 E-value=1.7 Score=42.85 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.7
Q ss_pred chhhhhHHHHHHHHhhhcccCChhHHHH
Q 012054 7 EVWGTWEELLLGGAVLRHGTRDWNLVAA 34 (472)
Q Consensus 7 ~~wgt~eellL~~aV~rhg~~~w~~va~ 34 (472)
..|+.-|+--|-.-|++||+++|..|-+
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3588889988889999999999999876
No 88
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=59.24 E-value=6.7 Score=32.60 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=38.5
Q ss_pred ccchhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHH
Q 012054 5 VIEVWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQ 59 (472)
Q Consensus 5 ~~~~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~ 59 (472)
++..|+.-|.-++-.|...||- +|..||..|..| |...|-.-|+.-+
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~K-------t~~~cV~~YY~~K 88 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPK-NFGLIASFLERK-------TVAECVLYYYLTK 88 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTTC-------CHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCC-------CHHHHHHHHhccc
Confidence 3567999899999999999995 899998877666 7788988887543
No 89
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.82 E-value=20 Score=28.50 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhhhhhhHHHH
Q 012054 71 ELRKQRMAELKRALELSENSIGSLESKLETLK 102 (472)
Q Consensus 71 eLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~ 102 (472)
..+..||.||..+|+..|.-|+.|++++.++.
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999988774
No 90
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=42.39 E-value=45 Score=33.40 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHhhhcccCChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcCCchH
Q 012054 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYGCKAW 68 (472)
Q Consensus 8 ~wgt~eellL~~aV~rhg~~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~~~~w 68 (472)
.|.--+-..+..|+-+||-.+|+.||.+|... |++.-+.-|..+-.||.--..|
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~K-------t~eEV~~Y~~vFw~ry~ei~d~ 165 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGK-------TPEEVIEYNAVFWERCTELQDI 165 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTC-------CHHHHHHHHHHHHHHGGGCTTH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHhHHHhccH
Confidence 35555888889999999999999999999643 6777788889999999643344
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.55 E-value=24 Score=28.42 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=28.4
Q ss_pred HHHHHH--HHHHHHHHHHHhhhhchhhhhhhhHHHH
Q 012054 69 FEELRK--QRMAELKRALELSENSIGSLESKLETLK 102 (472)
Q Consensus 69 ~eeLrk--~Rvaelrr~~~~~d~SIgsLqskvk~L~ 102 (472)
.+|||. .||++|-.+|...|.-|-.||+++..++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 4899999999999999999999998774
No 92
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=38.24 E-value=26 Score=28.80 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHh
Q 012054 312 DTIRSKISSHSIMSIKELFRDLLLLANN 339 (472)
Q Consensus 312 sTIKrKLesg~Y~S~~EF~rDL~LMf~N 339 (472)
.-|+..+.+|.|.|.+|+++|.+.++..
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~ 43 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEE 43 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999998877765
No 93
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.99 E-value=48 Score=27.04 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHH-----HHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 50 MCKAHYEDLQQRFYGCKAWFEELRKQR-----MAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 50 ~C~~k~~~l~~r~~~~~~w~eeLrk~R-----vaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
+++.--.+++.+|. +|+...- +.-||+.|...-+.-..|+.+|+.|++|
T Consensus 25 n~~~~~edfk~KyE------~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 25 NLAEDIMRLREKLQ------EEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554 3444443 3449999999999999999999999998
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=36.88 E-value=38 Score=33.92 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=30.6
Q ss_pred cchhhhhHHHHHHHHhhhccc---CChhHHHHHHhhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGT---RDWNLVAAELRAR 39 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~---~~w~~va~e~~~r 39 (472)
.-.|.--|+=+|.|.+++||. ++|+.|-.+++.-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 248 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRAS 248 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhC
Confidence 356888899999999999999 9999999999865
No 95
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=36.64 E-value=23 Score=23.26 Aligned_cols=15 Identities=53% Similarity=0.837 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012054 69 FEELRKQRMAELKRA 83 (472)
Q Consensus 69 ~eeLrk~Rvaelrr~ 83 (472)
++.||..|+++|...
T Consensus 7 Leair~~rl~~lq~~ 21 (27)
T 1yyb_A 7 LEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 788999999999764
No 96
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=32.92 E-value=5.9 Score=32.18 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=34.6
Q ss_pred cchhhhhHHHHHHHHhhhcccC---ChhHHHHHHhhccCCCCCCCHHhHHHHHHH
Q 012054 6 IEVWGTWEELLLGGAVLRHGTR---DWNLVAAELRARTVCPYTVTPEMCKAHYED 57 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~~---~w~~va~e~~~r~~~~~~~t~~~C~~k~~~ 57 (472)
...|..-|.-||-.|+.-|... -|..||.-|..| |++.|+..|+-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGK-------T~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGR-------TPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSS-------CHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 3469999999999998887654 699999877655 78888887764
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=31.93 E-value=50 Score=34.01 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.4
Q ss_pred cchhhhhHHHHHHHHhhhccc---CChhHHHHHHhhc
Q 012054 6 IEVWGTWEELLLGGAVLRHGT---RDWNLVAAELRAR 39 (472)
Q Consensus 6 ~~~wgt~eellL~~aV~rhg~---~~w~~va~e~~~r 39 (472)
.-.|.--|+=+|.|.|++||. +.|+.|-.+++.-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 264 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDC 264 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC
Confidence 346888899999999999999 9999999999875
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.29 E-value=47 Score=25.08 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 71 ELRKQRMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 71 eLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
+=++.++.+|-.+|+....-...|+.+|..|++|
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777888888888776
No 99
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.28 E-value=80 Score=27.01 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHH-----HHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 50 MCKAHYEDLQQRFYGCKAWFEELRKQ-----RMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 50 ~C~~k~~~l~~r~~~~~~w~eeLrk~-----Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
+++.-..+++.||. +|+.+. -+.-||+.|...-+....|+.+|+.|++|
T Consensus 45 n~~~~~edfk~KyE------~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 45 NLAEDIMRLREKLQ------EEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 44555566666664 344333 24568999999999999999999999998
No 100
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.92 E-value=1.4e+02 Score=23.08 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhchh
Q 012054 50 MCKAHYEDLQQRFYGCKAWFEELRKQRMAELKRALELSENSIG 92 (472)
Q Consensus 50 ~C~~k~~~l~~r~~~~~~w~eeLrk~Rvaelrr~~~~~d~SIg 92 (472)
.-++.|+.|..+.-.. +|.+....++||...+.+....+.
T Consensus 13 eiRaQYE~ia~knr~E---aE~~y~~k~eel~~~~~~~~~~l~ 52 (77)
T 3trt_A 13 DVRQQYESVAAKNLQE---AEEWYKSKFADLSEAANRNNDALR 52 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5678899998887542 233344556666666555544443
No 101
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.06 E-value=97 Score=22.88 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHH
Q 012054 50 MCKAHYEDLQQRFYGCKAWFEELRKQRMAELKRALELSENSIGSLESKLETL 101 (472)
Q Consensus 50 ~C~~k~~~l~~r~~~~~~w~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L 101 (472)
.|...|..+..+|.--..=|+++ +.++-.+..+|+....+|..|+.+|+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKA-KEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555544443222223333 3466677788888888999988888754
No 102
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.17 E-value=65 Score=24.41 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhchhhhhhhhHHHHhhh
Q 012054 73 RKQRMAELKRALELSENSIGSLESKLETLKAER 105 (472)
Q Consensus 73 rk~Rvaelrr~~~~~d~SIgsLqskvk~L~~er 105 (472)
++.++.+|-.+|+....-.-.|+.+|..|++|-
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777778888888888773
No 103
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.93 E-value=34 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhchh-hhhhhhHHHHhhhc
Q 012054 72 LRKQRMAELKRALELSENSIG-SLESKLETLKAERG 106 (472)
Q Consensus 72 Lrk~Rvaelrr~~~~~d~SIg-sLqskvk~L~~er~ 106 (472)
|-++.|+|||.+|....+++. .=+-=|++|.+.-+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 457899999999999999874 44446788877644
No 104
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=25.50 E-value=19 Score=27.39 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhchh-hhhhhhHHHHhh
Q 012054 72 LRKQRMAELKRALELSENSIG-SLESKLETLKAE 104 (472)
Q Consensus 72 Lrk~Rvaelrr~~~~~d~SIg-sLqskvk~L~~e 104 (472)
|-++.|+|||.++....++.. .=+-=|++|++-
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 457899999999999999874 434456777665
No 105
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=24.58 E-value=1.4e+02 Score=25.11 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=44.6
Q ss_pred CcccchhhhhHHHHHHHHhhhccc--CChhHHHHHHhhccCCCCCCCHHhHHHHHHHHHHHhcC
Q 012054 3 AEVIEVWGTWEELLLGGAVLRHGT--RDWNLVAAELRARTVCPYTVTPEMCKAHYEDLQQRFYG 64 (472)
Q Consensus 3 ~~~~~~wgt~eellL~~aV~rhg~--~~w~~va~e~~~r~~~~~~~t~~~C~~k~~~l~~r~~~ 64 (472)
++.+.-|.--++-.|-.+--+-|+ .-|..||.-|..| +++.-+.+|++|..=|..
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nk-------s~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNK-------TPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSC-------CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccC-------CHHHHHHHHHHHHHHHHH
Confidence 567888998877666666677776 5799999999888 678889999999987753
No 106
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.66 E-value=93 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHH------HHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 70 EELRKQR------MAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 70 eeLrk~R------vaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
|.|.+|| +..-+.+|++-+.-|-.++.+|+.|+..
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455555 5555667777777788888888888764
No 107
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.92 E-value=65 Score=26.51 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHhcCCchHHHHHHHH--HHHHHHHHHHhhhhc
Q 012054 59 QQRFYGCKAWFEELRKQ--RMAELKRALELSENS 90 (472)
Q Consensus 59 ~~r~~~~~~w~eeLrk~--Rvaelrr~~~~~d~S 90 (472)
..||....+|+-||+.| ||-||-+|-.+|+--
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkK 48 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWK 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555455799999855 688888888888743
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.83 E-value=88 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhh
Q 012054 68 WFEELRKQRMAELKRALELSENSIGSLESKLETLKAE 104 (472)
Q Consensus 68 w~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~e 104 (472)
-+.+=.+.++.+|-.+++.-..-...|..+|..|+.|
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777777777666677777777777766
No 109
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.51 E-value=44 Score=27.06 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhhch-hhhhhhhHHHHhhhcC
Q 012054 71 ELRKQRMAELKRALELSENSI-GSLESKLETLKAERGD 107 (472)
Q Consensus 71 eLrk~Rvaelrr~~~~~d~SI-gsLqskvk~L~~er~~ 107 (472)
.|-++.|+|||.+|....+++ |.=+.=|+||++.-+.
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999997 4445578888877443
No 110
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.10 E-value=1.6e+02 Score=23.39 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHhhh
Q 012054 55 YEDLQQRFYGCKAWFEELRKQRMAELKRALELSENSIGSLESKLETLKAER 105 (472)
Q Consensus 55 ~~~l~~r~~~~~~w~eeLrk~Rvaelrr~~~~~d~SIgsLqskvk~L~~er 105 (472)
|.++..++-..++=|.+|+. +=.+|-++|++-+.....-+ .|++||.+|
T Consensus 5 ~~d~I~~Lk~~d~~f~~L~~-eH~~LD~~I~~le~~~~~~~-~l~~LKk~K 53 (76)
T 1zhc_A 5 FRDEISVLKANNPHFDKIFE-KHNQLDDDIKTAEQQNASDA-EVSHMKKQK 53 (76)
T ss_dssp HHHHHHHSTTTSTTHHHHHH-HHHHHHHHHHHHHTTCSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhcCCCChH-HHHHHHHHH
Confidence 77888888877888888875 45677788877777766555 778887775
Done!