BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012055
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A KG + + +LL A DK G TPLH AA+ G+LE VL++ G D+ T
Sbjct: 52 HLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA--DVNAT 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+D H ++ L
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVL 132
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +D G TPLH AAI+G+LE VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA--DVNAADKM 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+ H ++ L
Sbjct: 80 GDTPLHLAALYGHLEIVEVL 99
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +DK+G TPLH AA G+LE VL++AG D+
Sbjct: 52 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAK 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+ + H ++ L
Sbjct: 110 DKDGYTPLHLAAREGHLEIVEVL 132
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK+G TPLH AA G+LE VL++AG D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKD 79
Query: 77 GLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPI 113
G TP LA+ + H ++ L A ++ K DG +P+
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 117
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +DK+G TPLH AA G+LE VL++AG D+
Sbjct: 85 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H + G + I +LL A DK G TPLH AA RG+LE VL++ G D+
Sbjct: 52 HLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA--DVNAM 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA++ H ++ L
Sbjct: 110 DYQGYTPLHLAAEDGHLEIVEVL 132
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H AY+G + + +LL A D +G TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH G+LE VL++ D+ +D +
Sbjct: 22 ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA--DVNASDKS 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+ + H ++ L
Sbjct: 80 GWTPLHLAAYRGHLEIVEVL 99
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A+ G + + +LL A +D +G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA--DVNAQ 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D GLTP LA+D+ H ++ L
Sbjct: 110 DAYGLTPLHLAADRGHLEIVEVL 132
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D +G TPLH AA G+ E VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA--DVNARDTD 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+D H ++ L
Sbjct: 80 GWTPLHLAADNGHLEIVEVL 99
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A QD G TPLH AA RG+LE VL++ G D+
Sbjct: 85 HLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H AY G + + +LL A D G TPLH AA RG+LE VL++ G D+
Sbjct: 52 HLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA--DVNAN 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G TP LA++ H ++ L
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVL 132
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ D+
Sbjct: 22 ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA--DVNADDSL 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G+TP LA+D+ H +V L
Sbjct: 80 GVTPLHLAADRGHLEVVEVL 99
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +DK+G TPLH AA G+LE VL++AG D+
Sbjct: 40 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAK 97
Query: 74 DNTGLTPAQLASDKNHRQV 92
D G TP LA+ + H ++
Sbjct: 98 DKDGYTPLHLAAREGHLEI 116
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK+G TPLH AA G+LE VL++AG D+ D
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKD 67
Query: 77 GLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLG 120
G TP LA+ + H ++ L A ++ K DG +P+ ++ G
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +DK+G TPLH AA G+LE VL++AG D+
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQ 130
Query: 74 DNTGLTPAQLASDKNHRQVAFFLGNA 99
D G TP LA + H +A L A
Sbjct: 131 DKFGKTPFDLAIREGHEDIAEVLQKA 156
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +DK+G TPLH AA G+LE VL++AG D+
Sbjct: 40 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAK 97
Query: 74 DNTGLTPAQLASDKNHRQV 92
D G TP LA+ + H ++
Sbjct: 98 DKDGYTPLHLAAREGHLEI 116
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK+G TPLH AA G+LE VL++AG D+ D
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAKDKD 67
Query: 77 GLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLG 120
G TP LA+ + H ++ L A ++ K DG +P+ ++ G
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +DK+G TPLH AA G+LE VL++AG D+
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQ 130
Query: 74 DNTGLTPAQLASDKNHRQVAFFLGNA 99
D G TP LA D + +A L A
Sbjct: 131 DKFGKTPFDLAIDNGNEDIAEVLQKA 156
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++LLL A +D +G TPLH AA G+ E +L+ G D
Sbjct: 42 HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNAK 99
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G TP LA++ H++V L
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLL 122
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++LLL A +D +G TPLH AA G+ E +L+ G D +
Sbjct: 75 HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNTS 132
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G TP LA + + +V L
Sbjct: 133 DSDGRTPLDLAREHGNEEVVKLL 155
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A G + ++LLL A D +G TPL A GN E +L + G
Sbjct: 108 HLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 49 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRC 107
AA GN + L++ G D+ +D+ G TP LA++ H++ V L K
Sbjct: 11 AAENGNKDRVKDLLENGA--DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 108 DGNSPI 113
DG +P+
Sbjct: 69 DGKTPL 74
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++LLL A +DK G TPLH AA G+LE +L++AG D+
Sbjct: 7 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--DVNAK 64
Query: 74 DNTGLTPAQLASDKNHRQVAFFLGNA 99
D G TP LA+ H +V L A
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 42 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 99
G TPLH AA G+LE +L++AG D+ D G TP LA+ H +V L A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A G + ++LLL A +DK G TPLH AA G+LE +L++AG
Sbjct: 73 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++LLL A +DK G TPLH AA G+LE +L++AG D+
Sbjct: 7 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--DVNAK 64
Query: 74 DNTGLTPAQLASDKNHRQVAFFLGNA 99
D G TP LA+ H +V L A
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 42 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 99
G TPLH AA G+LE +L++AG D+ D G TP LA+ H +V L A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A G + ++LLL A +DK G TPLH AA G+LE +L++AG
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + ++LL+ A +D +G TPLH+AA G+ E +L+ G D+
Sbjct: 42 HYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA--DVNAK 99
Query: 74 DNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
D+ G TP A+ + H++ V + + DG +P+
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D ++ L+ A D +G TPLH+AA G+ E +L+ G D+ D+
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA--DVNAKDSD 69
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPIGKISKLG 120
G TP A+ + H++ V + + K DG +P+ +K G
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A +G + ++LL+ A D +G TPL A GN E +L + G
Sbjct: 108 HYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A+ G + + +LL A +D G TPLH AA RG+LE VL++ G D+ +
Sbjct: 52 HLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA--DVNAS 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G TP LA+ + H ++ L
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +D G TPLH AA G+LE VL++ G D+ D+
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA--DVNAKDSL 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G+TP LA+ + H ++ L
Sbjct: 80 GVTPLHLAARRGHLEIVEVL 99
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A D G TPLH AA RG+LE VL++ G D+
Sbjct: 85 HLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D +G TPLH AA G+LE VL++ G D+ +D T
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA--DVNASDLT 79
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPIGKISKLG 120
G+TP LA+ H + V L + + DG++P+ +K G
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG 124
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA--DVNAY 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
DN G TP LA+ H ++ L
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVL 132
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D +G TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H AY G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA--DVNAK 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G+TP LA+++ H ++ L
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVL 132
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ D
Sbjct: 22 ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA--DVNAYDTL 79
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
G TP LA+ H + V L N + K +G +P+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A+ G + + +LL A +D G TPLH AA RG+LE VL++ G D+
Sbjct: 85 HLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ + + +A L
Sbjct: 143 DKFGKTAFDISINNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++LL+ A +D +G TPLH AA G+ E +L+ G D+
Sbjct: 42 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA--DVNAK 99
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G TP A++ H++V L
Sbjct: 100 DSDGRTPLHHAAENGHKEVVKLL 122
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D ++ L+ A D +G TPLH AA G+ E +L+ G D+ D+
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA--DVNAKDSD 69
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
G TP A++ H++ V + + K DG +P+
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 107
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A G + ++LL+ A D +G TPL A GN E +L + G
Sbjct: 108 HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 49 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRC 107
AA GN + L++ G D+ +D+ G TP A++ H++ V + + K
Sbjct: 11 AAENGNKDRVKDLIENGA--DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 108 DGNSPI 113
DG +P+
Sbjct: 69 DGRTPL 74
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++LLL A +D +G TPLH+AA G+ E +L+ G D
Sbjct: 42 HYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA--DPNAK 99
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D+ G TP A++ H+++ L
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLL 122
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D ++ LL A D +G TPLH+AA G+ E +L+ G D D+
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA--DPNAKDSD 69
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
G TP A++ H++ V L K DG +P+
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A G + ++LLL A D +G TPL A GN E +L + G
Sbjct: 108 HYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA+ G+LE VL++ G D+
Sbjct: 52 HLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--DVNAF 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D TG TP LA+D+ H ++ L
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVL 132
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA+ G+LE VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA--DVDAADVY 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+ H ++ L
Sbjct: 80 GFTPLHLAAMTGHLEIVEVL 99
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVA 93
D G T ++ D + +A
Sbjct: 143 DKFGKTAFDISIDNGNEDLA 162
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +D G TPLH AA G+LE VL++ G D+ D+
Sbjct: 22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA--DVNAVDHA 79
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
G+TP +LA+ H + V L N + +G++P+
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A+ G + + +LL A D G TPL AA+ G+LE VL++ G D+
Sbjct: 52 HLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA--DVNAN 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+ H ++ L
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVL 132
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G + + +LL A D EG TPLH AA+ G+LE VL++ G D+ D G T
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 80 PAQLASDKNHRQVAFFL 96
++ D + +A L
Sbjct: 149 AFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA RG+LE VL++ G D+
Sbjct: 52 HLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA--DVNAD 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+D H ++ L
Sbjct: 110 DTIGSTPLHLAADTGHLEIVEVL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +D G TPLH AA G+LE VL++ G D+ D +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA--DVNALDFS 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+ + H ++ L
Sbjct: 80 GSTPLHLAAKRGHLEIVEVL 99
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D++G TPLH AA G+LE VL++ G D+ DN
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA--DVNAEDNF 79
Query: 77 GLTPAQLASDKNHRQV 92
G+TP LA+ + H ++
Sbjct: 80 GITPLHLAAIRGHLEI 95
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A +D G TPLH AAIRG+LE VL++ G D+
Sbjct: 52 HLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA--DVNAQ 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G LE VL++ G D+ +D+
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA--DVNASDSA 71
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G+TP LA+ H ++ L
Sbjct: 72 GITPLHLAAYDGHLEIVEVL 91
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H AY G + + +LL A D+ G TPLH AA+ G LE VL++ G D+
Sbjct: 77 HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA--DVNAQ 134
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D GLT ++ ++ +A L
Sbjct: 135 DALGLTAFDISINQGQEDLAEIL 157
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 44 HLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA--DVNAY 101
Query: 74 DNTGLTPAQLAS 85
D G TP LA+
Sbjct: 102 DRAGWTPLHLAA 113
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G A+ + LLL A +K G TPLH A G++ VL++ G D T
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--AT 307
Query: 74 DNTGLTPAQLASD-KNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLG 120
G TP +AS N + V F L + + K G SP+ + ++ G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
HC A G + ++LLL +A G TPLH AA G++E L++ + M
Sbjct: 85 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT- 143
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
G TP +A+ +VA L
Sbjct: 144 -KKGFTPLHVAAKYGKVRVAELL 165
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G LLL DA+ K G TPLH A NL+ +L+ G
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
+ G TP +A+ +N +VA L
Sbjct: 211 N--GYTPLHIAAKQNQVEVARSL 231
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H ++ G ++ LL A + K G +PLH AA +G+ + T+L++ G + + +
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 74 DNTGLTPAQLA 84
D G TP +A
Sbjct: 376 D--GTTPLAIA 384
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + LL +A + K+G TPLH AA G + +L++ +
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AA 175
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
GLTP +A N+ + L
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLL 198
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 44 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA-FFLGNARRL 102
TPLH A+ G+L L+Q G + V++ TP +A+ H +VA + L N ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 103 LDKRCDGNSPIGKISKLG 120
K D +P+ +++G
Sbjct: 74 NAKAKDDQTPLHCAARIG 91
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G D +R+L+ A D G TPLH AA RG+LE VL++ G D+ +D+ G T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDSWGRT 82
Query: 80 PAQLASDKNHRQV 92
P LA+ H ++
Sbjct: 83 PLHLAATVGHLEI 95
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA--DVNAQ 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ DN
Sbjct: 22 ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWDNY 79
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
G TP LA+D H + V L + + K +G +P+
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL 117
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--DVNAK 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+ H ++ L
Sbjct: 110 DYEGFTPLHLAAYDGHLEIVEVL 132
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A +D EG TPLH AA G+LE VL++ G D+
Sbjct: 85 HLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ +D
Sbjct: 22 ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA--DVDASDVF 79
Query: 77 GLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPIGKISKLG 120
G TP LA+ H + V L N + DG +P+ +K G
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG 124
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H AY G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA--DVNAM 109
Query: 74 DNTGLTPAQLAS 85
D+ G+TP LA+
Sbjct: 110 DSDGMTPLHLAA 121
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
Length = 135
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L A D G TPLH AA+ G+LE VL++ G D+ T NT
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA--DVNATGNT 79
Query: 77 GLTPAQLASDKNHRQV 92
G TP LA+ +H ++
Sbjct: 80 GRTPLHLAAWADHLEI 95
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG 97
QD G +P+H AA G L+ VLV+ G D+ V D TG P LA + H V FL
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGA--DVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 98 NARRLLDKRCDGNSPI 113
L + G +P+
Sbjct: 122 AESDLHRRDARGLTPL 137
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 69
T H A GF D +++L+ A D G P+H A G+ + L + D
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESD 125
Query: 70 LMVTDNTGLTPAQLA 84
L D GLTP +LA
Sbjct: 126 LHRRDARGLTPLELA 140
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G D +R+L+ A D G TPLH AA RG+LE VL++ G D+ +D G T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNASDIWGRT 82
Query: 80 PAQLASDKNHRQV 92
P LA+ H ++
Sbjct: 83 PLHLAATVGHLEI 95
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA--DVNAQ 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG 97
QD G +P+H AA G L+ VLV+ G D+ V D TG P LA + H V FL
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGA--DVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 98 NARRLLDKRCDGNSPI 113
L + G +P+
Sbjct: 128 AESDLHRRDARGLTPL 143
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 69
T H A GF D +++L+ A D G P+H A G+ + L + D
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESD 131
Query: 70 LMVTDNTGLTPAQLA 84
L D GLTP +LA
Sbjct: 132 LHRRDARGLTPLELA 146
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK+G TPLH AA G+LE VL++AG D+ D
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKF 67
Query: 77 GLTPAQLASDKNHRQVAFFLGNA 99
G T ++ D + +A L A
Sbjct: 68 GKTAFDISIDNGNEDLAEILQKA 90
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G D +R+L+ A D G TPLH AA RG+LE VL++ G D+ D G T
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DVNARDIWGRT 82
Query: 80 PAQLASDKNHRQV 92
P LA+ H ++
Sbjct: 83 PLHLAATVGHLEI 95
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +G + + +LL A +D G TPLH AA G+LE VL++ G D+
Sbjct: 52 HLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA--DVNAQ 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA G+LE VL++ G D+
Sbjct: 40 HMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA--DVNAK 97
Query: 74 DNTGLTPAQLASDKNHRQV 92
D TG+TP LA+ H ++
Sbjct: 98 DATGITPLYLAAYWGHLEI 116
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ D
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA--DVNAVDTN 67
Query: 77 GLTPAQLASDKNHRQV 92
G TP LA+ H ++
Sbjct: 68 GTTPLHLAASLGHLEI 83
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 69
T H A G + + +LL A +D G TPL+ AA G+LE VL++ G D
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA--D 126
Query: 70 LMVTDNTGLTPAQLASDKNHRQVAFFL 96
+ D G T ++ D + +A L
Sbjct: 127 VNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG 97
QD G +P+H AA G L+ VLV+ G D+ D+TG P LA + H V FL
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGA--DVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 98 NARRLLDKRCDGNSPI 113
L + G +P+
Sbjct: 130 PESDLHHRDASGLTPL 145
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 69
T H A GF D +++L+ A D G P+H A G+ + L + D
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESD 133
Query: 70 LMVTDNTGLTPAQLASDK 87
L D +GLTP +LA +
Sbjct: 134 LHHRDASGLTPLELARQR 151
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG 97
QD G +P+H AA G L+ VLV+ G D+ D+TG P LA + H V FL
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGA--DVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 98 NARRLLDKRCDGNSPI 113
L + G +P+
Sbjct: 128 PESDLHHRDASGLTPL 143
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 69
T H A GF D +++L+ A D G P+H A G+ + L + D
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESD 131
Query: 70 LMVTDNTGLTPAQLASDK 87
L D +GLTP +LA +
Sbjct: 132 LHHRDASGLTPLELARQR 149
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK G TPLH AA G+LE +L++AG D+ D
Sbjct: 32 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDKF 89
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G T ++ D + +A L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA--DVNAIDIX 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+ H ++ L
Sbjct: 80 GSTPLHLAALIGHLEIVEVL 99
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA+ G+LE VL++ G D+
Sbjct: 52 HLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA--DVNAV 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+ H ++ L
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVL 132
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AAI G+LE VL++ G D+
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D G TPLH AA G+LE VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA--DVNAIDIM 79
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G TP LA+ H ++ L
Sbjct: 80 GSTPLHLAALIGHLEIVEVL 99
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AA+ G+LE VL++ G D+
Sbjct: 52 HLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA--DVNAV 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G TP LA+ H ++ L
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVL 132
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + + +LL A D G TPLH AAI G+LE VL++ G D+
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQ 142
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +D+ G TPL+ A G+LE VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--DVNAVDAI 79
Query: 77 GLTPAQLASDKNHRQVA 93
G TP LA+ H ++A
Sbjct: 80 GFTPLHLAAFIGHLEIA 96
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G + + +LL A D G TPLH AA G+LE VL++ G D+ D G T
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA--DVNAQDKFGKT 115
Query: 80 PAQLASDKNHRQVAFFL 96
++ + +A L
Sbjct: 116 AFDISIGNGNEDLAEIL 132
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK G TPLH AA G+LE +L++AG D+ D
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVNAQDKF 71
Query: 77 GLTPAQLASDKNHRQVAFFL 96
G T ++ D + +A L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A +DK G TPLH AA+ +LE VL++ G D+ D
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA--DVNAIDAI 79
Query: 77 GLTPAQLASDKNHRQV 92
G TP L + H ++
Sbjct: 80 GETPLHLVAMYGHLEI 95
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A + + +LL A D G TPLH A+ G+LE VL++ G D+
Sbjct: 52 HLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA--DVNAQ 109
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
D G T ++ D + +A L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 17 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 76
A G D +R+L+ A D++G TPLH AA +LE VL++ G D+ DN
Sbjct: 22 ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA--DVNAHDND 79
Query: 77 GLTPAQLASDKNHRQV 92
G TP LA+ H ++
Sbjct: 80 GSTPLHLAALFGHLEI 95
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 23 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQ 82
+ + +LL A D +G TPLH AA+ G+LE VL++ G D+ D G T
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA--DVNAQDKFGKTAFD 118
Query: 83 LASDKNHRQVAFFL 96
++ D + +A L
Sbjct: 119 ISIDNGNEDLAEIL 132
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 44 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLL 103
+PLH AA G+++ C +LVQAG D D TP A++ NH + +L A L+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYLIKAGALV 70
Query: 104 D-KRCDGNSPIGKISKLG 120
D K +G++ + +K G
Sbjct: 71 DPKDAEGSTCLHLAAKKG 88
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 23 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQ 82
D ++LLL + +D E LHWAA G ++ +L+ A K DL + G +P
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA--KCDLHAVNIHGDSPLH 182
Query: 83 LASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
+A+ +N V FL + K +G +P+
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G D +L+ A ++ TPL AA +LEA L++AG D
Sbjct: 16 HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD--PK 73
Query: 74 DNTGLTPAQLASDKNHRQVA-FFLGNARRLLDKRCDGNSPIGKISKLGLAPALW 126
D G T LA+ K H +V + L N + ++ + DG G P +W
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG----------GWTPMIW 117
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G A+ ++ LL A + K+G TPLH AA G+ E +L+ G D+
Sbjct: 14 HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA--DVNAR 71
Query: 74 DNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNS 111
G TP LA H ++ L ++ R G+S
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 40 KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGN 98
K+G TPLH AA G+ E L+ G D+ G TP LA+ H + V L
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGA--DVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 99 ARRLLDKRCDGNSP 112
+ + DGN+P
Sbjct: 65 GADVNARSKDGNTP 78
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A KG I +LL+ A QD EG TPLH A +E +LV G + +
Sbjct: 144 HRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA--SIYIE 201
Query: 74 DNTGLTPAQLA 84
+ TP Q+A
Sbjct: 202 NKEEKTPLQVA 212
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++ LL A ++ GCTPLH+AA + E +L++ G D
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AK 135
Query: 74 DNTGLTPAQLASDK-NHRQVAFFLGNARRLLDKRCDGNSPI 113
D+ T A+ K N + + L + +GN+P+
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL 176
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 16 IAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 74
+AY G + ++ + D + R D++ T LHWA G+ E L+Q G + D
Sbjct: 13 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD 70
Query: 75 NTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
+ G +P +A+ + V LG ++ +G +P+
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 110
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A KG I +LL+ A QD EG TPLH A +E +LV G + +
Sbjct: 145 HRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA--SIYIE 202
Query: 74 DNTGLTPAQLA 84
+ TP Q+A
Sbjct: 203 NKEEKTPLQVA 213
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++ LL A ++ GCTPLH+AA + E +L++ G D
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AK 136
Query: 74 DNTGLTPAQLASDK-NHRQVAFFLGNARRLLDKRCDGNSPI 113
D+ T A+ K N + + L + +GN+P+
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL 177
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 16 IAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 74
+AY G + ++ + D + R D++ T LHWA G+ E L+Q G + D
Sbjct: 14 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD 71
Query: 75 NTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 113
+ G +P +A+ + V LG ++ +G +P+
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 111
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A KG + +LLF A QD EG TPLH A +E LV G + +
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS--IYIE 201
Query: 74 DNTGLTPAQLA 84
+ TP Q+A
Sbjct: 202 NKEEKTPLQVA 212
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++ LL A+ ++ GCTPLH+AA + E +L++ G D
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AK 135
Query: 74 DNTGLTPAQLASDK-NHRQVAFFLGNARRLLDKRCDGNSPI 113
D+ T A+ K N + V L + +GN+P+
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 16 IAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 74
+AY G D ++ + D + R D++ T LHWA G+ E L+Q G + D
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD 70
Query: 75 NTGLTPAQLAS 85
+ G +P +A+
Sbjct: 71 DAGWSPLHIAA 81
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A KG + +LLF A QD EG TPLH A +E LV G + +
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS--IYIE 201
Query: 74 DNTGLTPAQLA 84
+ TP Q+A
Sbjct: 202 NKEEKTPLQVA 212
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G + ++ LL A+ ++ GCTPLH+AA + E +L++ G D
Sbjct: 78 HIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AK 135
Query: 74 DNTGLTPAQLASDK-NHRQVAFFLGNARRLLDKRCDGNSPI 113
D+ T A+ K N + V L + +GN+P+
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 16 IAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 74
+AY G D ++ + D + R D++ T LHWA G+ E L+Q G + D
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD 70
Query: 75 NTGLTPAQLASDKNHRQVAFFL 96
+ G +P +A+ ++ L
Sbjct: 71 DAGWSPLHIAASAGRDEIVKAL 92
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 63
H A KG+ + ++LL+ +D +G TPLH AA G EAC +LV+
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 37 RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 85
R K G T LH AA +G E +L+QA + D+ + D G TP A+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGWTPLHAAA 240
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 35 RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 92
+ +QD++G TP+ AA G +E L+Q G + D T T QLA NH +
Sbjct: 306 KDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS--VEAVDATDHTARQLAQANNHHNI 361
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 63
H A GF D ++ LL A +D EG PLH AA G+L LV+
Sbjct: 75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 63
H A GF D ++ LL A +D EG PLH AA G+L LV+
Sbjct: 75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 63
H A GF D ++ LL A +D EG PLH AA G+L LV+
Sbjct: 75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 37 RQDKEGCTPLHWAAIRGNLEACTVLV---QAGKKEDLMVTDNTGLTPAQLA 84
R D++G TPLH A ++GNL A LV Q G +E L + +N TP LA
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLA 53
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 31 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 90
LD Y D G TP H A GNLE L K DL N G+T LA K
Sbjct: 64 LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 91 QVAFFL---GNARRLLDK 105
+V+ FL G + R+ DK
Sbjct: 121 EVSQFLIENGASVRIKDK 138
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 96
QDK+G TPL A G+ +A +LV+ G + DL+ DN G +A ++ ++ FFL
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFL 225
Query: 97 GN 98
N
Sbjct: 226 NN 227
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCT-PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
G A LLL A D T P+H AA G L+ VL +AG + D V D G
Sbjct: 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGR 112
Query: 79 TPAQLASDKNHRQVAFFL 96
P LA ++ HR +A +L
Sbjct: 113 LPVDLAEEQGHRDIARYL 130
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 31 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 90
LD Y D G TP H A GNLE L K DL N G+T LA K
Sbjct: 64 LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 91 QVAFFL---GNARRLLDK 105
+V+ FL G + R+ DK
Sbjct: 121 EVSQFLIENGASVRIKDK 138
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 96
QDK+G TPL A G+ +A +LV+ G + DL+ DN G +A ++ ++ FFL
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFL 225
Query: 97 GN 98
N
Sbjct: 226 NN 227
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 31 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 90
LD Y D G TP H A GNLE L K DL N G+T LA K
Sbjct: 64 LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 91 QVAFFL---GNARRLLDK 105
+V+ FL G + R+ DK
Sbjct: 121 EVSQFLIENGASVRIKDK 138
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 96
QDK+G TPL A G+ +A +LV+ G + DL+ DN G +A ++ ++ FFL
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFL 225
Query: 97 GN 98
N
Sbjct: 226 NN 227
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G+ D + LLL D D G TPL + A+RGN C + A + DL ++G T
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALLA-RGADLTTEADSGYT 137
Query: 80 PAQLASDKNHRQVAFFLGN 98
P LA +R+V + N
Sbjct: 138 PMDLAVALGYRKVQQVIEN 156
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 35.4 bits (80), Expect = 0.066, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCT-PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
G A LLL A D T P+H AA G L+ VL +AG + D V D G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGR 112
Query: 79 TPAQLASDKNHRQVAFFLGNA 99
P LA + HR VA +L A
Sbjct: 113 LPVDLAEELGHRDVARYLRAA 133
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 63
H A GF D ++ LL A +D EG PLH AA G+L LV+
Sbjct: 75 HDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCT-PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
G A LLL A D T P+H AA G L+ VL +AG + D V D G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGR 112
Query: 79 TPAQLASDKNHRQVAFFL 96
P LA + HR VA +L
Sbjct: 113 LPVDLAEELGHRDVARYL 130
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 69
T H A G +LL R + K TPLH AA G+ VL++ G D
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA--D 92
Query: 70 LMVTDNTGLTPAQLASDKNHRQVAFFL 96
+ D +T A++ NH++V L
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELL 119
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 18/83 (21%)
Query: 30 FLDAYRGRQDKE----------------GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
L+A R QD E G +PLH AA G+ VL++AG D
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART- 64
Query: 74 DNTGLTPAQLASDKNHRQVAFFL 96
TP +A+ + H + L
Sbjct: 65 -KVDRTPLHMAASEGHANIVEVL 86
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
H A +G A+ + +LL A +D T LHWA + E +L++ G
Sbjct: 72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 89
D EGC+ +H AA G+ L+ G+ D+M D G+TP A+ + H
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTPLMWAAYRTH 154
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 43 CTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNA 99
TPLHWA +G+L L++ G L+ D G + LA+ H + +L G
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 100 RRLLDKRCDGNSPIGKISKLGLAPALWC 127
++D+ G+ P +W
Sbjct: 135 VDMMDQN-------------GMTPLMWA 149
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 17 AYKGFA-DCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKED 69
AY+ + D RLLL + DK T LHWA + GN ++L++AG D
Sbjct: 150 AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 34 YRGRQ-DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 89
Y RQ DKE T LHWAAI ++ + G D + D TP A+ + H
Sbjct: 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLHWATRQGH 88
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G+ D + LLL D D G TPL + A+ GN C + A + DL ++G T
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALLA-RGADLTTEADSGYT 137
Query: 80 PAQLASDKNHRQVAFFLGN 98
P LA +R+V + N
Sbjct: 138 PMDLAVALGYRKVQQVIEN 156
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A G AD I LLL A G ++ + PLH A +G+ + L+ + K +
Sbjct: 91 HVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KK 148
Query: 74 DNTGLTPAQLA-SDKNHRQVAFFLGNARRLLDKRCDGNSPI 113
D +G TP A S +H VA L + + GN+ +
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 98
D G +PLHWA G +L+ G + ++M + TP LA+ HR +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDI------ 87
Query: 99 ARRLLDKRCDGNS 111
++LL + D N+
Sbjct: 88 VQKLLQYKADINA 100
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 98
D G +PLHWA G +L+ G + ++M + TP LA+ HR +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDI------ 82
Query: 99 ARRLLDKRCDGNS 111
++LL + D N+
Sbjct: 83 VQKLLQYKADINA 95
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 63
H A G D ++ LL A +D EG PLH AA G+L LV+
Sbjct: 75 HDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 37 RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV-AFF 95
+ D+ G T LH AA +A L++A D + DN G TP A + + V
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 96 LGNARRLLDKRC-DGNSPIGKISKLGLAPALWCVI 129
+ N LD R DG +P+ ++L + L +I
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 44 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLL 103
TPLH AA +G E C +L+Q G D + G TP L D + G+A LL
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVKDGDTDIQDLLRGDA-ALL 170
Query: 104 D 104
D
Sbjct: 171 D 171
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV-AFFL 96
+DK G PLH A G+ E +LV+ G + V D TP A+ K ++ L
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLL 132
Query: 97 GNARRLLDKRCDGNSPI 113
+ K DGN+P+
Sbjct: 133 QHGADPTKKNRDGNTPL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 44 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 99
TPLH AA +G E C +L+Q G D + G TP L D + G+A
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVKDGDTDIQDLLRGDA 163
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV-AFFL 96
+DK G PLH A G+ E +LV+ G + V D TP A+ K ++ L
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 97 GNARRLLDKRCDGNSPI 113
+ K DGN+P+
Sbjct: 129 QHGADPTKKNRDGNTPL 145
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 44 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 99
TPLH AA +G E C +L+Q G D + G TP L D + G+A
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVKDGDTDIQDLLRGDA 165
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 38 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV-AFFL 96
+DK G PLH A G+ E +LV+ G + V D TP A+ K ++ L
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAV--VNVADLWKFTPLHEAAAKGKYEICKLLL 130
Query: 97 GNARRLLDKRCDGNSPI 113
+ K DGN+P+
Sbjct: 131 QHGADPTKKNRDGNTPL 147
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A + D + +L A D G T LH AA+ G+L+ C +L+ G D +
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS--DPSII 309
Query: 74 DNTGLTPAQLASD 86
G T AQ+ ++
Sbjct: 310 SLQGFTAAQMGNE 322
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 25 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 84
++LLL A +DK G PLH A G+ E +L++ G + M D TP A
Sbjct: 74 VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM--DLWQFTPLHEA 131
Query: 85 SDKNHRQVAFFL 96
+ KN +V L
Sbjct: 132 ASKNRVEVCSLL 143
>pdb|2H3G|X Chain X, Structure Of The Type Iii Pantothenate Kinase (Coax) From
Bacillus Anthracis
Length = 268
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 267 EVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSY----ASTHHIGAL---SFLIADFSLFFG 319
EV A + AV I ++ P+ FG +Y H++G + +I+ +L+
Sbjct: 105 EVGADRIVNAVAGIHLYGSPLIIVDFGTATTYCYINEEKHYMGGVITPGIMISAEALYSR 164
Query: 320 VAVLTAVQASQISRNI---TTNEMANALRYNYL---RGAGGRFRNPYDHGCKRNCSDFLI 373
A L ++ ++ S + T + M + + Y Y+ G R + K + L
Sbjct: 165 AAKLPRIEITKPSSVVGKNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQEPKVIATGGLA 224
Query: 374 NGFNED---VECVEDSAGTEGIGMMHMSRNSNLQNGDGH 409
+E+ ++ V+ +G+ M++ RN+NLQ+ G
Sbjct: 225 KLISEESNVIDVVDPFLTLKGLYMLY-ERNANLQHEKGE 262
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 71
D+EG TPL WAA G + L+Q G L+
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 19 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
KG+ D +++LL D G TPL +A +++ +L+++G D + ++G
Sbjct: 95 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGY 152
Query: 79 TPAQLASDKNHRQV 92
LA +R V
Sbjct: 153 NSMDLAVALGYRSV 166
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 19 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
+G D ++ +++ + EG T LH A G+ E LVQ G ++ D+ G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSDGW 104
Query: 79 TPAQLASDKNHRQVAFFL 96
TP A+ N+ QV FL
Sbjct: 105 TPLHCAASCNNVQVCKFL 122
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
G + ++ L+ D +G TPLH AA N++ C LV++G
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 71
D+EG TPL WAA G + L+Q G L+
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 19 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
KG+ D +++LL D G TPL +A +++ +L+++G D + ++G
Sbjct: 77 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGY 134
Query: 79 TPAQLASDKNHRQV 92
LA +R V
Sbjct: 135 NSMDLAVALGYRSV 148
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 19 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
+G D ++ +++ + EG T LH A G+ E LVQ G ++ D+ G
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--NVNAADSDGW 104
Query: 79 TPAQLASDKNHRQVAFFL 96
TP A+ N+ QV FL
Sbjct: 105 TPLHCAASCNNVQVCKFL 122
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65
G + ++ L+ D +G TPLH AA N++ C LV++G
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 71
D+EG TPL WAA G + L+Q G L+
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 19 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 78
KG+ D +++LL D G TPL +A +++ +L+++G D + ++G
Sbjct: 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGY 136
Query: 79 TPAQLASDKNHRQV 92
LA +R V
Sbjct: 137 NSMDLAVALGYRSV 150
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G DC+ LLL A + + + +P+H AA RG++E L+ G D ++ + G T
Sbjct: 136 GSWDCVNLLLQHGASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLG-T 192
Query: 80 PAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKL 119
P LA + R ++LL+ D N G+ S L
Sbjct: 193 PLYLACENQQRAC------VKKLLESGADVNQGKGQDSPL 226
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 20 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79
G DC+ LLL A + + + +P+H AA RG++E L+ G D ++ + G T
Sbjct: 80 GSWDCVNLLLQHGASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLG-T 136
Query: 80 PAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKL 119
P LA + R ++LL+ D N G+ S L
Sbjct: 137 PLYLACENQQRAC------VKKLLESGADVNQGKGQDSPL 170
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 25 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 84
+ L+ DA D G T LHWAA N EA +L+ D D+ TP LA
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKDETPLFLA 191
Query: 85 S 85
+
Sbjct: 192 A 192
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 11 EEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDL 70
E+ H A KG D +R L+ Q++ GCT LH A G ++ L G+ L
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81
Query: 71 MVTDNTGLTPAQLA--SDKNHRQVAFFLGNARR 101
G P LA ++K VA G R
Sbjct: 82 W----HGQKPIHLAVXANKTDLVVALVEGAKER 110
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 238 VEQFDHHCPWVSNCIGK-KNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWM 296
VE++ H VS IG K K++ L A V+GA P+A +
Sbjct: 299 VEKYSHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGA-------PKPMAMNIIETLE 351
Query: 297 SYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISR 333
Y + GA+ F+ AD + F +A+ TA ++ R
Sbjct: 352 EYKRGPYAGAVGFISADGNAEFAIAIRTAFLNKELLR 388
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTG 77
D+ G TPLHW NLE LV+ G + DN G
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMG 164
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +D + LL A QD G TPLH AA+ + + ++ + DL
Sbjct: 30 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDAR 88
Query: 74 DNTGLTPAQLAS 85
+ G TP LA+
Sbjct: 89 MHDGTTPLILAA 100
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +D + LL A QD G TPLH AA+ + + ++ + DL
Sbjct: 63 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDAR 121
Query: 74 DNTGLTPAQLAS 85
+ G TP LA+
Sbjct: 122 MHDGTTPLILAA 133
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 14 HCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73
H A +D + LL A QD G TPLH AA+ + + ++ + DL
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATDLDAR 120
Query: 74 DNTGLTPAQLAS 85
+ G TP LA+
Sbjct: 121 MHDGTTPLILAA 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,344,900
Number of Sequences: 62578
Number of extensions: 530597
Number of successful extensions: 1571
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 236
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)