Query 012055
Match_columns 472
No_of_seqs 400 out of 4346
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0509 Ankyrin repeat and DHH 100.0 2.2E-49 4.7E-54 400.3 14.1 357 8-376 111-586 (600)
2 KOG1315 Predicted DHHC-type Zn 100.0 1.1E-40 2.4E-45 319.4 13.0 216 157-389 49-267 (307)
3 KOG1314 DHHC-type Zn-finger pr 100.0 3.9E-39 8.4E-44 302.6 12.2 192 163-376 57-264 (414)
4 KOG1311 DHHC-type Zn-finger pr 100.0 1.8E-37 3.8E-42 305.5 20.3 155 213-377 112-268 (299)
5 PF01529 zf-DHHC: DHHC palmito 100.0 2.6E-37 5.7E-42 280.9 10.2 171 169-343 2-173 (174)
6 KOG1313 DHHC-type Zn-finger pr 100.0 2E-34 4.3E-39 263.0 13.1 161 214-377 102-278 (309)
7 COG5273 Uncharacterized protei 100.0 3.1E-33 6.7E-38 272.6 12.8 170 162-346 64-235 (309)
8 KOG1312 DHHC-type Zn-finger pr 100.0 1E-29 2.2E-34 233.2 11.4 201 163-375 107-331 (341)
9 KOG0509 Ankyrin repeat and DHH 99.9 4.7E-25 1E-29 224.0 5.0 433 8-470 77-570 (600)
10 KOG4412 26S proteasome regulat 99.8 4.8E-20 1E-24 159.9 5.7 114 8-123 37-153 (226)
11 KOG4412 26S proteasome regulat 99.7 2.4E-18 5.2E-23 149.4 6.8 109 6-116 69-179 (226)
12 PHA02791 ankyrin-like protein; 99.6 4.6E-15 9.9E-20 144.4 10.7 110 8-121 29-140 (284)
13 PHA02741 hypothetical protein; 99.6 1.2E-14 2.5E-19 131.4 10.0 112 8-121 20-144 (169)
14 KOG0195 Integrin-linked kinase 99.6 7.1E-15 1.5E-19 136.3 7.6 108 8-117 33-141 (448)
15 PHA02743 Viral ankyrin protein 99.6 2E-14 4.4E-19 129.4 10.2 93 9-103 57-154 (166)
16 PHA02791 ankyrin-like protein; 99.6 1.8E-14 3.9E-19 140.3 10.6 113 9-123 61-174 (284)
17 PF12796 Ank_2: Ankyrin repeat 99.5 3.4E-14 7.3E-19 113.9 10.3 86 13-104 1-86 (89)
18 PHA02874 ankyrin repeat protei 99.5 4E-14 8.7E-19 147.2 10.9 111 8-120 123-234 (434)
19 KOG0508 Ankyrin repeat protein 99.5 1.1E-14 2.5E-19 143.1 6.3 115 9-125 117-231 (615)
20 PHA02741 hypothetical protein; 99.5 8.9E-14 1.9E-18 125.6 11.5 93 8-102 59-157 (169)
21 PHA02859 ankyrin repeat protei 99.5 5.4E-14 1.2E-18 131.5 10.3 107 8-116 50-165 (209)
22 PHA02884 ankyrin repeat protei 99.5 6.1E-14 1.3E-18 136.7 10.9 110 10-121 34-149 (300)
23 PHA02859 ankyrin repeat protei 99.5 6.2E-14 1.3E-18 131.1 10.2 107 6-117 18-131 (209)
24 PHA02878 ankyrin repeat protei 99.5 4.7E-14 1E-18 148.5 10.2 106 9-116 168-276 (477)
25 PHA02875 ankyrin repeat protei 99.5 6.9E-14 1.5E-18 144.5 11.0 108 9-118 102-211 (413)
26 KOG0510 Ankyrin repeat protein 99.5 4.8E-14 1E-18 146.9 9.3 118 6-124 270-392 (929)
27 KOG0512 Fetal globin-inducing 99.5 5.6E-14 1.2E-18 121.5 7.4 105 13-119 67-173 (228)
28 PHA02736 Viral ankyrin protein 99.5 4.4E-14 9.6E-19 125.5 6.9 91 9-101 55-150 (154)
29 KOG0502 Integral membrane anky 99.5 3.7E-14 8E-19 127.0 5.9 113 8-122 159-272 (296)
30 PHA02878 ankyrin repeat protei 99.5 1.8E-13 4E-18 143.9 10.8 115 7-123 35-215 (477)
31 PHA02743 Viral ankyrin protein 99.5 2.2E-13 4.7E-18 122.7 9.1 112 8-121 19-140 (166)
32 PHA02946 ankyin-like protein; 99.4 4.3E-13 9.2E-18 139.4 10.5 103 10-114 38-146 (446)
33 KOG0514 Ankyrin repeat protein 99.4 6.8E-13 1.5E-17 127.0 10.2 95 5-100 336-430 (452)
34 PHA03095 ankyrin-like protein; 99.4 4.9E-13 1.1E-17 140.4 10.1 109 8-118 46-161 (471)
35 PHA02795 ankyrin-like protein; 99.4 6.1E-13 1.3E-17 135.0 9.9 109 10-120 150-265 (437)
36 PHA02875 ankyrin repeat protei 99.4 7.8E-13 1.7E-17 136.6 10.9 107 9-117 35-143 (413)
37 PHA03100 ankyrin repeat protei 99.4 6.8E-13 1.5E-17 139.7 10.5 107 9-117 176-291 (480)
38 PHA02874 ankyrin repeat protei 99.4 9.4E-13 2E-17 136.9 11.2 113 9-123 68-204 (434)
39 KOG0508 Ankyrin repeat protein 99.4 4.7E-13 1E-17 131.9 8.0 114 8-123 83-197 (615)
40 PHA02716 CPXV016; CPX019; EVM0 99.4 6.5E-13 1.4E-17 143.5 9.8 73 9-83 177-253 (764)
41 PLN03192 Voltage-dependent pot 99.4 1E-12 2.2E-17 146.9 11.0 111 10-122 526-668 (823)
42 PHA02884 ankyrin repeat protei 99.4 1.4E-12 3.1E-17 127.2 10.2 88 8-97 69-157 (300)
43 KOG0512 Fetal globin-inducing 99.4 1.1E-12 2.4E-17 113.5 8.2 112 9-122 97-211 (228)
44 PHA02716 CPXV016; CPX019; EVM0 99.4 1.4E-12 3E-17 141.0 9.9 107 8-116 211-359 (764)
45 PHA02736 Viral ankyrin protein 99.4 5.2E-13 1.1E-17 118.6 5.4 111 8-122 16-139 (154)
46 PF13637 Ank_4: Ankyrin repeat 99.4 1.5E-12 3.3E-17 94.0 6.5 54 9-62 1-54 (54)
47 PHA03095 ankyrin-like protein; 99.4 2.4E-12 5.3E-17 135.1 10.6 112 8-121 186-302 (471)
48 PHA02798 ankyrin-like protein; 99.3 2.2E-12 4.7E-17 136.2 9.5 107 8-116 70-189 (489)
49 PHA02798 ankyrin-like protein; 99.3 3.3E-12 7.2E-17 134.8 10.5 89 8-98 108-207 (489)
50 PLN03192 Voltage-dependent pot 99.3 3.6E-12 7.9E-17 142.4 11.2 96 8-105 557-683 (823)
51 PHA02730 ankyrin-like protein; 99.3 4.7E-12 1E-16 134.5 11.4 113 8-120 40-166 (672)
52 KOG4177 Ankyrin [Cell wall/mem 99.3 2E-12 4.3E-17 142.6 8.5 93 8-102 539-631 (1143)
53 PHA02946 ankyin-like protein; 99.3 3.8E-12 8.3E-17 132.3 10.2 107 8-117 71-181 (446)
54 PHA02876 ankyrin repeat protei 99.3 3.1E-12 6.7E-17 140.5 10.0 104 9-114 375-481 (682)
55 PHA03100 ankyrin repeat protei 99.3 3.2E-12 7E-17 134.5 9.7 109 9-119 35-151 (480)
56 KOG0514 Ankyrin repeat protein 99.3 1E-12 2.3E-17 125.8 5.2 113 6-120 265-418 (452)
57 KOG0510 Ankyrin repeat protein 99.3 4.2E-12 9.1E-17 132.7 9.7 114 7-122 223-354 (929)
58 PF13857 Ank_5: Ankyrin repeat 99.3 1.6E-12 3.6E-17 94.6 4.3 55 28-84 1-56 (56)
59 PHA02795 ankyrin-like protein; 99.3 6.7E-12 1.4E-16 127.4 8.6 112 8-123 115-235 (437)
60 PF12796 Ank_2: Ankyrin repeat 99.3 7.9E-12 1.7E-16 100.1 7.3 64 9-74 26-89 (89)
61 KOG4214 Myotrophin and similar 99.3 4.7E-12 1E-16 98.4 5.6 100 9-111 2-102 (117)
62 KOG4214 Myotrophin and similar 99.3 8.9E-12 1.9E-16 96.8 6.7 77 6-84 30-107 (117)
63 KOG4177 Ankyrin [Cell wall/mem 99.3 7.2E-12 1.6E-16 138.3 7.9 112 9-122 507-619 (1143)
64 PHA02989 ankyrin repeat protei 99.3 1.6E-11 3.6E-16 129.7 10.3 48 73-120 252-300 (494)
65 PHA02989 ankyrin repeat protei 99.3 1.7E-11 3.7E-16 129.6 10.1 104 9-114 69-186 (494)
66 cd00204 ANK ankyrin repeats; 99.3 4.3E-11 9.3E-16 100.7 10.3 108 7-116 5-113 (126)
67 PHA02876 ankyrin repeat protei 99.2 2E-11 4.4E-16 134.1 10.5 108 9-118 273-384 (682)
68 PTZ00322 6-phosphofructo-2-kin 99.2 2.9E-11 6.2E-16 131.6 11.4 87 11-99 84-170 (664)
69 PHA02730 ankyrin-like protein; 99.2 2.3E-11 5.1E-16 129.2 9.1 110 7-118 376-505 (672)
70 KOG0502 Integral membrane anky 99.2 2.9E-11 6.3E-16 108.6 6.6 103 10-114 194-296 (296)
71 TIGR00870 trp transient-recept 99.2 5E-11 1.1E-15 132.2 9.9 112 8-121 127-269 (743)
72 PHA02917 ankyrin-like protein; 99.2 4.8E-11 1E-15 129.3 8.9 109 11-121 105-241 (661)
73 KOG1710 MYND Zn-finger and ank 99.1 1E-10 2.2E-15 108.9 8.2 91 7-99 43-134 (396)
74 PHA02917 ankyrin-like protein; 99.1 1.6E-10 3.5E-15 125.2 10.3 95 8-104 395-513 (661)
75 PF13637 Ank_4: Ankyrin repeat 99.1 1.1E-10 2.4E-15 84.3 6.1 54 42-97 1-54 (54)
76 KOG0505 Myosin phosphatase, re 99.1 9.9E-11 2.2E-15 117.8 7.4 112 9-120 73-242 (527)
77 PHA02792 ankyrin-like protein; 99.1 2E-10 4.4E-15 121.0 9.3 106 10-117 340-451 (631)
78 COG0666 Arp FOG: Ankyrin repea 99.1 8.2E-10 1.8E-14 102.8 11.6 115 9-125 73-196 (235)
79 KOG0195 Integrin-linked kinase 99.1 1.6E-10 3.6E-15 107.6 6.2 93 10-104 68-160 (448)
80 KOG0507 CASK-interacting adapt 99.0 1.5E-10 3.2E-15 120.4 4.5 117 7-125 47-164 (854)
81 cd00204 ANK ankyrin repeats; 99.0 1.7E-09 3.7E-14 90.8 10.0 88 7-96 38-125 (126)
82 COG0666 Arp FOG: Ankyrin repea 99.0 9.1E-10 2E-14 102.5 9.0 91 8-100 105-203 (235)
83 PF13857 Ank_5: Ankyrin repeat 99.0 4.2E-10 9.2E-15 81.8 4.4 43 7-49 14-56 (56)
84 PHA02792 ankyrin-like protein; 99.0 1.3E-09 2.8E-14 115.0 8.8 86 9-96 374-465 (631)
85 KOG3676 Ca2+-permeable cation 99.0 1.3E-09 2.9E-14 114.8 8.2 117 7-125 182-324 (782)
86 KOG3676 Ca2+-permeable cation 98.9 1.4E-09 3E-14 114.6 7.8 95 6-100 237-331 (782)
87 KOG0515 p53-interacting protei 98.9 2E-09 4.4E-14 107.6 7.7 101 13-115 554-656 (752)
88 KOG0515 p53-interacting protei 98.9 2.7E-09 5.8E-14 106.8 7.0 91 8-100 582-675 (752)
89 KOG0507 CASK-interacting adapt 98.8 2.9E-09 6.2E-14 111.0 5.1 111 7-119 80-199 (854)
90 KOG0506 Glutaminase (contains 98.8 4E-09 8.8E-14 104.3 5.2 92 10-102 507-598 (622)
91 TIGR00870 trp transient-recept 98.8 6.9E-09 1.5E-13 115.2 6.4 94 8-101 174-281 (743)
92 KOG0818 GTPase-activating prot 98.7 4.5E-08 9.8E-13 97.4 8.9 87 12-100 136-223 (669)
93 KOG0505 Myosin phosphatase, re 98.7 4.1E-08 8.9E-13 99.2 7.9 103 13-117 44-147 (527)
94 KOG0783 Uncharacterized conser 98.7 1.4E-08 3E-13 106.5 4.1 86 5-92 48-134 (1267)
95 PTZ00322 6-phosphofructo-2-kin 98.7 4.6E-08 9.9E-13 106.7 8.4 76 8-85 114-196 (664)
96 KOG1710 MYND Zn-finger and ank 98.6 5E-08 1.1E-12 91.2 6.5 101 10-112 13-115 (396)
97 PF13606 Ank_3: Ankyrin repeat 98.5 1.3E-07 2.7E-12 59.2 3.7 29 9-37 2-30 (30)
98 KOG4369 RTK signaling protein 98.5 9.4E-08 2E-12 103.0 4.6 110 10-121 758-869 (2131)
99 PF00023 Ank: Ankyrin repeat H 98.5 1.9E-07 4E-12 59.9 4.3 32 9-40 2-33 (33)
100 PF00023 Ank: Ankyrin repeat H 98.3 9.1E-07 2E-11 56.6 4.2 33 41-75 1-33 (33)
101 KOG0782 Predicted diacylglycer 98.3 8.2E-07 1.8E-11 89.8 5.7 90 10-101 900-991 (1004)
102 KOG0705 GTPase-activating prot 98.3 2.1E-06 4.6E-11 87.3 8.5 101 13-115 628-732 (749)
103 PF13606 Ank_3: Ankyrin repeat 98.3 1.3E-06 2.8E-11 54.6 3.8 29 41-71 1-29 (30)
104 KOG0522 Ankyrin repeat protein 98.2 2.3E-06 5E-11 86.6 7.3 85 12-98 23-109 (560)
105 KOG0521 Putative GTPase activa 98.1 3E-06 6.5E-11 92.6 4.7 92 6-99 653-744 (785)
106 KOG4369 RTK signaling protein 98.1 2.2E-06 4.9E-11 92.8 3.4 99 4-104 784-884 (2131)
107 KOG0782 Predicted diacylglycer 98.0 9.1E-06 2E-10 82.5 5.4 108 13-120 870-978 (1004)
108 KOG0705 GTPase-activating prot 98.0 1E-05 2.2E-10 82.4 5.5 57 9-65 661-717 (749)
109 KOG0783 Uncharacterized conser 98.0 2.5E-06 5.3E-11 90.1 1.1 83 35-119 45-129 (1267)
110 KOG0818 GTPase-activating prot 97.8 3.8E-05 8.2E-10 77.1 5.9 57 8-64 166-222 (669)
111 KOG2384 Major histocompatibili 97.7 5.8E-05 1.3E-09 67.0 5.5 67 32-99 2-68 (223)
112 KOG0522 Ankyrin repeat protein 97.7 8.2E-05 1.8E-09 75.6 6.4 59 7-65 53-111 (560)
113 KOG0511 Ankyrin repeat protein 97.6 0.00013 2.7E-09 71.2 7.1 83 12-99 39-121 (516)
114 KOG2384 Major histocompatibili 97.5 0.00033 7.1E-09 62.4 6.6 60 6-65 9-69 (223)
115 KOG0506 Glutaminase (contains 97.2 0.00051 1.1E-08 68.9 5.2 83 39-123 503-587 (622)
116 KOG0520 Uncharacterized conser 96.9 0.00057 1.2E-08 74.9 2.7 90 8-100 573-664 (975)
117 KOG3609 Receptor-activated Ca2 96.9 0.0015 3.3E-08 70.3 5.6 91 7-104 60-158 (822)
118 KOG0520 Uncharacterized conser 96.8 0.00084 1.8E-08 73.7 3.2 90 9-99 608-702 (975)
119 KOG0511 Ankyrin repeat protein 96.5 0.0039 8.5E-08 61.1 5.2 62 43-106 37-98 (516)
120 KOG2505 Ankyrin repeat protein 96.5 0.0067 1.4E-07 61.6 6.9 71 22-97 404-480 (591)
121 KOG0521 Putative GTPase activa 96.3 0.0047 1E-07 68.0 5.1 95 23-119 635-732 (785)
122 smart00248 ANK ankyrin repeats 96.3 0.0071 1.5E-07 35.6 3.8 28 9-36 2-29 (30)
123 smart00248 ANK ankyrin repeats 95.3 0.031 6.8E-07 32.6 3.8 25 41-65 1-25 (30)
124 KOG2505 Ankyrin repeat protein 94.5 0.038 8.3E-07 56.3 4.0 42 9-50 430-471 (591)
125 KOG3609 Receptor-activated Ca2 93.3 0.073 1.6E-06 57.8 3.7 81 12-101 28-112 (822)
126 KOG1311 DHHC-type Zn-finger pr 89.9 0.3 6.6E-06 48.1 3.6 42 227-268 112-164 (299)
127 COG5273 Uncharacterized protei 88.7 1.7 3.8E-05 42.9 7.9 150 213-374 122-279 (309)
128 PF01529 zf-DHHC: DHHC palmito 88.1 1.6 3.4E-05 39.1 6.7 37 224-260 44-80 (174)
129 KOG1315 Predicted DHHC-type Zn 86.1 5 0.00011 39.5 9.3 33 227-259 108-140 (307)
130 PF06128 Shigella_OspC: Shigel 80.2 6.3 0.00014 36.7 6.8 94 10-105 180-282 (284)
131 PF13240 zinc_ribbon_2: zinc-r 77.4 1.2 2.7E-05 25.7 0.9 21 216-236 1-21 (23)
132 PF06128 Shigella_OspC: Shigel 74.0 6.3 0.00014 36.7 5.0 45 21-65 229-277 (284)
133 PF13248 zf-ribbon_3: zinc-rib 69.8 2.5 5.4E-05 25.1 1.0 22 215-236 3-24 (26)
134 PRK04136 rpl40e 50S ribosomal 69.4 2.5 5.4E-05 29.0 1.0 23 214-236 14-36 (48)
135 KOG1314 DHHC-type Zn-finger pr 69.3 38 0.00081 33.7 9.3 94 153-266 52-146 (414)
136 PF07850 Renin_r: Renin recept 65.5 2.2 4.7E-05 34.3 0.2 33 149-181 51-83 (98)
137 KOG4737 ATPase membrane sector 58.7 16 0.00034 35.0 4.5 37 145-181 275-311 (326)
138 PF11929 DUF3447: Domain of un 57.7 22 0.00048 27.0 4.6 47 11-64 8-54 (76)
139 PF07010 Endomucin: Endomucin; 57.4 23 0.00051 32.8 5.2 29 164-192 204-232 (259)
140 PF11929 DUF3447: Domain of un 57.3 15 0.00032 28.0 3.5 47 44-99 8-54 (76)
141 PF10571 UPF0547: Uncharacteri 56.3 6.1 0.00013 23.5 0.9 22 215-236 1-22 (26)
142 COG1552 RPL40A Ribosomal prote 48.9 4.1 8.9E-05 28.0 -0.7 23 214-236 14-36 (50)
143 PTZ00303 phosphatidylinositol 46.0 9.7 0.00021 41.5 1.1 22 215-236 461-489 (1374)
144 PF12773 DZR: Double zinc ribb 45.3 15 0.00033 25.3 1.7 34 214-247 12-48 (50)
145 PF00641 zf-RanBP: Zn-finger i 42.6 11 0.00025 23.0 0.6 21 216-236 6-26 (30)
146 PRK15103 paraquat-inducible me 41.9 1.7E+02 0.0036 30.4 9.4 32 214-245 221-252 (419)
147 TIGR00155 pqiA_fam integral me 37.6 2.1E+02 0.0045 29.6 9.3 31 215-245 216-247 (403)
148 PF01020 Ribosomal_L40e: Ribos 37.3 17 0.00036 25.5 0.9 24 214-237 17-42 (52)
149 PF14015 DUF4231: Protein of u 34.3 2.4E+02 0.0052 22.7 7.7 20 332-351 79-98 (112)
150 KOG1842 FYVE finger-containing 31.1 15 0.00032 37.5 -0.3 28 213-240 179-208 (505)
151 smart00412 Cu_FIST Copper-Fist 26.7 38 0.00083 22.3 1.1 16 430-446 13-28 (39)
152 PF01363 FYVE: FYVE zinc finge 24.4 31 0.00068 25.4 0.5 26 214-239 9-36 (69)
153 COG2093 DNA-directed RNA polym 22.1 45 0.00098 24.4 0.9 22 215-236 5-26 (64)
154 PF06906 DUF1272: Protein of u 22.0 51 0.0011 23.5 1.2 36 216-254 7-50 (57)
155 KOG3183 Predicted Zn-finger pr 21.7 44 0.00095 31.4 1.0 12 238-249 38-49 (250)
156 PF06143 Baculo_11_kDa: Baculo 21.1 2.4E+02 0.0052 22.1 4.8 30 311-340 39-68 (84)
157 smart00064 FYVE Protein presen 20.4 65 0.0014 23.6 1.6 25 215-239 11-37 (68)
No 1
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=100.00 E-value=2.2e-49 Score=400.30 Aligned_cols=357 Identities=27% Similarity=0.390 Sum_probs=221.8
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
+|.|||||||++|++.++.+|+++|||++.+|.+|.+|||.|++.|+...+.+|+..| +|++.+|.+|+|||++|+.+
T Consensus 111 l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~--~d~d~~D~~grTpLmwAayk 188 (600)
T KOG0509|consen 111 LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG--ADIDLRDNNGRTPLMWAAYK 188 (600)
T ss_pred CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc--ccCCCcCCCCCCHHHHHHHh
Confidence 5689999999999999999999999999999999999999999999999999999988 88888888888888888888
Q ss_pred CchhHHHHHHhhhhhcc-cC-CCCCCCCccccc----------------------cCcchh-------------------
Q 012055 88 NHRQVAFFLGNARRLLD-KR-CDGNSPIGKISK----------------------LGLAPA------------------- 124 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~-~~-~~~~tpl~~~~k----------------------~g~~p~------------------- 124 (472)
++...+..|++-++.+. .+ .+|.||||.... .|.+|+
T Consensus 189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~~~~~~~~h~~~~~ 268 (600)
T KOG0509|consen 189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQERKLVAALHHDVVER 268 (600)
T ss_pred cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHhhhHHHhhccHHHh
Confidence 88775666655544433 22 456666654111 011110
Q ss_pred -----------------HHHHHHHHhh----h----eeeeEE------------------------eecc-Cchh-----
Q 012055 125 -----------------LWCVILLMLV----T----YMHSVI------------------------MASN-LPKL----- 149 (472)
Q Consensus 125 -----------------l~~iii~ll~----~----yi~~~~------------------------~~~~-l~~~----- 149 (472)
.+.+ ++..+ . ++..+. .... .+..
T Consensus 269 ~~~~~~K~~~~~~~~~~~~f~-~~~~~~~~~~~~~g~i~~~~~~w~i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (600)
T KOG0509|consen 269 LGKVVKKWFLGSKLAALIFFI-FLGLFYFISSWLPGVIFLINSLWLIKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFF 347 (600)
T ss_pred hcccccchhhhhHHHHHHHHH-HHHHHHHHHhhccchhhhhhhHHHHhhhhhhhhhhheeccchhhccccccchhHHHHH
Confidence 0110 00000 0 000000 0000 0110
Q ss_pred --hHHHHHHHHHH-------------HHH-HHHHHHHHhhhhccCCCccccCCCCCCCCCCChhhhhhhccCcchhcCcc
Q 012055 150 --TAGFGLLAWSG-------------VFL-ATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNW 213 (472)
Q Consensus 150 --~~~~~~~~~~~-------------~~l-~~~~l~~~~~~~~~dPG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (472)
+....+..|+. .++ .+..++++++...+|||++|...... .+...++.+.... +.
T Consensus 348 ~~~~fw~~~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~~--~~tIs~l~d~gkf-------~~ 418 (600)
T KOG0509|consen 348 LSTLFWFYYFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEVG--RETISQLIDFGKF-------DL 418 (600)
T ss_pred HHHHHHHHHhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhhH--HHHHHHhhccccc-------cc
Confidence 01111112222 112 22334467778889999999864322 1111122211111 12
Q ss_pred c-ccccccccccCCCCccCccccchhccccCcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCc
Q 012055 214 S-QLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSF 292 (472)
Q Consensus 214 ~-~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (472)
. +||.+|.++||+|||||++|+|||.||||||||++||||.+|||+|+.|++.....+.++...+.+.+..........
T Consensus 419 en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~~~~ 498 (600)
T KOG0509|consen 419 ENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENASTIY 498 (600)
T ss_pred cccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 3 699999999999999999999999999999999999999999999999998776666555555444443221110000
Q ss_pred cc-c--cccccccccchhhhhhhhHH-HHHHHHHHHHHHHHHHhhchhhHHhHhhhhhhhhhcCCCCccCCCCHhHHHHH
Q 012055 293 GA-W--MSYASTHHIGALSFLIADFS-LFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNC 368 (472)
Q Consensus 293 ~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~r~~~~~~~~~~~~npy~~G~~~N~ 368 (472)
.. + ++.......+...++...-+ .........+.|-..++.++||+|.++..||+++..+....++|++.|+.+|+
T Consensus 499 ~~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl 578 (600)
T KOG0509|consen 499 VGFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNL 578 (600)
T ss_pred HHHHHHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcc
Confidence 00 0 00000000000000000000 00111122233445688899999999999999998888888999999999999
Q ss_pred HHhccCCc
Q 012055 369 SDFLINGF 376 (472)
Q Consensus 369 ~~f~~~~~ 376 (472)
.+|+....
T Consensus 579 ~df~~~~~ 586 (600)
T KOG0509|consen 579 VDFFLCSD 586 (600)
T ss_pred hheeeccc
Confidence 99998664
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=319.45 Aligned_cols=216 Identities=22% Similarity=0.290 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCccccCCCCCCCCCCCh-hhhhhhccCcchh--cCcccccccccccccCCCCccCcc
Q 012055 157 AWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDE-PLLKIEMNNPALL--AGNWSQLCATCKIVRPLRAKHCST 233 (472)
Q Consensus 157 ~~~~~~l~~~~l~~~~~~~~~dPG~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~C~~C~~~kP~Rs~HC~~ 233 (472)
..++.++.++.+++|++++++|||.+|..+....++++.. .....+.+.+... .....|+|.+|+.+||+|||||++
T Consensus 49 ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsv 128 (307)
T KOG1315|consen 49 LLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSV 128 (307)
T ss_pred HHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCcccccceeeEecCCCCceeecccccccCCccccchh
Confidence 3344566778889999999999999998876543332211 1111111112111 112479999999999999999999
Q ss_pred ccchhccccCcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccccchhhhhhhh
Q 012055 234 CDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIAD 313 (472)
Q Consensus 234 C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (472)
|+|||+||||||||+|||||.+|||+|++|++|+.+++++.++..+..+...... .. . .........++.+++.
T Consensus 129 C~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~ 202 (307)
T KOG1315|consen 129 CNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQG-GA----G-PSSLLLFFIVFLFLVA 202 (307)
T ss_pred hhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc----c-CchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998866665544333221100 00 0 0001112233444555
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHhHhhhhhhhhhcCCCCccCCCCHhHHHHHHHhccCCccCCccccccCCCC
Q 012055 314 FSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGT 389 (472)
Q Consensus 314 ~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~r~~~~~~~~~~~~npy~~G~~~N~~~f~~~~~~~~~~~~~~~p~~ 389 (472)
..+.+.++.++++|+++|++|+||+|.++...+. .++...+.|+. ..|+.|+|+.+ ...|..|.+
T Consensus 203 ~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~----~~~~~~~~~~~--~~n~~~vfg~~-----~~~wl~P~~ 267 (307)
T KOG1315|consen 203 IAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFR----SGLHNKNGFNL--YVNFREVFGSN-----LLYWLLPID 267 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHhhhcccccc----ccccccCCcce--eecHHHHhCCC-----ceEEecccc
Confidence 5666777779999999999999999987654222 12233566776 88999999977 456776654
No 3
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=3.9e-39 Score=302.58 Aligned_cols=192 Identities=26% Similarity=0.476 Sum_probs=135.6
Q ss_pred HHHHHHHHHhhhhccCCCccccCCCCCCCCCCChhhhhhhccCcchhcCcccccccccccccCCCCccCccccchhcccc
Q 012055 163 LATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFD 242 (472)
Q Consensus 163 l~~~~l~~~~~~~~~dPG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~D 242 (472)
...+.+++|+.+++++||++|.+|.++.. .+ + .+.+||.+|+.+|+||||||+.|+|||.+||
T Consensus 57 ~~~m~~~ny~~A~~~gPG~vp~~wkPe~~-~D-~---------------~~lqfCk~CqgYKapRSHHCrkCnrCvmkMD 119 (414)
T KOG1314|consen 57 WTSMILYNYFNAIFTGPGFVPLGWKPENP-KD-E---------------MFLQFCKKCQGYKAPRSHHCRKCNRCVMKMD 119 (414)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCC-hh-H---------------HHHHHHhhccCcCCCccccchHHHHHHHhhc
Confidence 34566789999999999999999975322 11 1 1258999999999999999999999999999
Q ss_pred CcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHh-------hhhhh----cCCCCCCCcccccccccccccchhhhhh
Q 012055 243 HHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVT-------VIRVF----TDPVAPSSFGAWMSYASTHHIGALSFLI 311 (472)
Q Consensus 243 HHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (472)
|||||+|||||..||-+|..||++..++++-..++. ++..+ .....|..+ + .....+..++.+-
T Consensus 120 HHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~---f--t~~~li~~vfslg 194 (414)
T KOG1314|consen 120 HHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIVF---F--TLSSLIALVFSLG 194 (414)
T ss_pred cCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCceee---c--cHHHHHHHHHHhH
Confidence 999999999999999999999999888553332221 11111 111111100 0 0011111122222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhhHHhHh----hhhhhhh-hcCCCCccCCCCHhHHHHHHHhccCCc
Q 012055 312 ADFSLFFGVAVLTAVQASQISRNITTNEMAN----ALRYNYL-RGAGGRFRNPYDHGCKRNCSDFLINGF 376 (472)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~----~~r~~~~-~~~~~~~~npy~~G~~~N~~~f~~~~~ 376 (472)
+..+..+.+++|++.|+..|.+|+|.+|.+- ..|..|+ .+..+++..|||.|++.|++|+|....
T Consensus 195 la~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~~ 264 (414)
T KOG1314|consen 195 LAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQNK 264 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhcc
Confidence 3345567778899999999999999999764 2344343 333478899999999999999987653
No 4
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=305.51 Aligned_cols=155 Identities=26% Similarity=0.445 Sum_probs=118.2
Q ss_pred ccccccccccccCCCCccCccccchhccccCcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCc
Q 012055 213 WSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSF 292 (472)
Q Consensus 213 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (472)
..+||.+|+.+||||||||++||+||+||||||||+|||||++|||+|+.|+++..+++++..++.++.+........
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~-- 189 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLK-- 189 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 369999999999999999999999999999999999999999999999999998888888877776665443211100
Q ss_pred ccccc-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHhhchhhHHhHhhhhhhhhhcCCCCc-cCCCCHhHHHHHHH
Q 012055 293 GAWMS-YASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRF-RNPYDHGCKRNCSD 370 (472)
Q Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~r~~~~~~~~~~~-~npy~~G~~~N~~~ 370 (472)
..+.. .........+++.++++++.+.++.|+.+|+++|.+|+||+|.++. +. .+. .+|||+|.++|+++
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~--~~------~~~~~~~~~~g~~~n~~~ 261 (299)
T KOG1311|consen 190 VNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS--LD------FVSRSNPYDLGLLKNLQE 261 (299)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc--cc------cccccCCCchhHHHHHHH
Confidence 01110 0001111223334556777778888999999999999999998765 11 122 49999999999999
Q ss_pred hccCCcc
Q 012055 371 FLINGFN 377 (472)
Q Consensus 371 f~~~~~~ 377 (472)
+|+.+.+
T Consensus 262 ~~~~~~~ 268 (299)
T KOG1311|consen 262 VFGGPLP 268 (299)
T ss_pred HhCCCCC
Confidence 9998874
No 5
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=2.6e-37 Score=280.95 Aligned_cols=171 Identities=30% Similarity=0.538 Sum_probs=119.1
Q ss_pred HHHhhhhccCCCccccCCCCCCCCCCChh-hhhhhccCcchhcCcccccccccccccCCCCccCccccchhccccCcCcc
Q 012055 169 VLFYRCSRKDPGYIRMNVHDPQNMKDDEP-LLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPW 247 (472)
Q Consensus 169 ~~~~~~~~~dPG~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w 247 (472)
++|+++.++|||++|....+.....+... .........+.......++|.+|+..||+|||||+.|++||+||||||+|
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w 81 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW 81 (174)
T ss_pred EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence 46788999999999998222111111111 00011111111223457999999999999999999999999999999999
Q ss_pred cCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccccchhhhhhhhHHHHHHHHHHHHHH
Q 012055 248 VSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQ 327 (472)
Q Consensus 248 ~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (472)
+|||||++|||+|++|+++.++.+++.....+..+............+. ......+++++++++++++++.+++.|
T Consensus 82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (174)
T PF01529_consen 82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWI----FSNFSSIFLLIISIFFFIFVGFLLIFQ 157 (174)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----chhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777766555443322111111000 000112455566677788889999999
Q ss_pred HHHHhhchhhHHhHhh
Q 012055 328 ASQISRNITTNEMANA 343 (472)
Q Consensus 328 ~~~i~~n~Tt~E~~~~ 343 (472)
+++|++|+||+|.+|+
T Consensus 158 ~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 158 LYLILRNITTYERIKR 173 (174)
T ss_pred HHHHHcCCcHHHHHHc
Confidence 9999999999998874
No 6
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=2e-34 Score=262.97 Aligned_cols=161 Identities=30% Similarity=0.492 Sum_probs=116.8
Q ss_pred cccccccccccCCCCccCccccchhccccCcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC------
Q 012055 214 SQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPV------ 287 (472)
Q Consensus 214 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~------ 287 (472)
..+|.+|..+||||+|||++|++||++|||||||+|||||..||||||+|+++++++..+..++..+.......
T Consensus 102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t 181 (309)
T KOG1313|consen 102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT 181 (309)
T ss_pred ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 47899999999999999999999999999999999999999999999999999999988776664433221110
Q ss_pred -CCCCc-ccc-----cc-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHhhchhhHHhHhh--hhhhhhhcCCCCcc
Q 012055 288 -APSSF-GAW-----MS-YASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANA--LRYNYLRGAGGRFR 357 (472)
Q Consensus 288 -~~~~~-~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~--~r~~~~~~~~~~~~ 357 (472)
.++.. ..| +. +......-+....++++.++++++.+..+|.++|.+|.|.+|.... +|.+++.. ...
T Consensus 182 ay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~---~R~ 258 (309)
T KOG1313|consen 182 AYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAH---LRS 258 (309)
T ss_pred cccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHh---ccC
Confidence 01110 000 00 0001111122344556667788899999999999999999997643 23333322 226
Q ss_pred CCCCHhHHHHHHHhccCCcc
Q 012055 358 NPYDHGCKRNCSDFLINGFN 377 (472)
Q Consensus 358 npy~~G~~~N~~~f~~~~~~ 377 (472)
||++.|.++||+.|++-...
T Consensus 259 ~~~n~g~k~nWr~fLg~~~~ 278 (309)
T KOG1313|consen 259 NPTNFGGKANWRNFLGLFRG 278 (309)
T ss_pred CCcccchHHHHHHhhccccC
Confidence 99999999999999997653
No 7
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=272.62 Aligned_cols=170 Identities=28% Similarity=0.433 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhhhccCCCccccCCCCCCCCCCChhhhhhhccCcchhcCcccccccccccccCCCCccCccccchhccc
Q 012055 162 FLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQF 241 (472)
Q Consensus 162 ~l~~~~l~~~~~~~~~dPG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~ 241 (472)
++.....+.+++.++.|||+.+++....+..+..++..+.... +..++|.+|+.+||+|||||+.||+||+||
T Consensus 64 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~ 136 (309)
T COG5273 64 VILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKF-------GTENFCSTCNIYKPPRSHHCSICNRCVLKF 136 (309)
T ss_pred hhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCcc-------ccceeccccccccCCCCccchhhcchhhcc
Confidence 3444566788999999999998765443333333333222222 247999999999999999999999999999
Q ss_pred cCcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccccchhhh--hhhhHHHHHH
Q 012055 242 DHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSF--LIADFSLFFG 319 (472)
Q Consensus 242 DHHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 319 (472)
||||||+|||||++|||+|++|+++....+++.+....+.+......+.....++ ..+++ ..+...+++.
T Consensus 137 DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~~~~~f~~ 208 (309)
T COG5273 137 DHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAI--------CFLIFGCSLLGVVFFII 208 (309)
T ss_pred CccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHH--------HHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999988777766665555443332222211110 11111 1233445666
Q ss_pred HHHHHHHHHHHHhhchhhHHhHhhhhh
Q 012055 320 VAVLTAVQASQISRNITTNEMANALRY 346 (472)
Q Consensus 320 ~~~l~~~~~~~i~~n~Tt~E~~~~~r~ 346 (472)
+..++..+.+++..|+||+|.....|.
T Consensus 209 ~~~~~~~~~~~~~~~~t~~e~~~~~~~ 235 (309)
T COG5273 209 TTLLLLFLIYLILNNLTTIEFIQISRG 235 (309)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 777888999999999999998866554
No 8
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.96 E-value=1e-29 Score=233.20 Aligned_cols=201 Identities=26% Similarity=0.373 Sum_probs=118.7
Q ss_pred HHHHHHHHHhhhhccCCCccccCCCCCCCCCCChhhhhhhccCcchhcCcccccccccccccCCCCccCccccchhcccc
Q 012055 163 LATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFD 242 (472)
Q Consensus 163 l~~~~l~~~~~~~~~dPG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~D 242 (472)
+.+...++++.++.+|||.+.+........+. |.+.. + ......|.||+++||.|||||++|||||.|||
T Consensus 107 ~vivp~i~f~ltc~snpg~i~k~n~s~~~~~y--pYDy~------i--f~k~~kCSTCki~KPARSKHCsiCNrCV~rfD 176 (341)
T KOG1312|consen 107 LVIVPLIFFTLTCGSNPGIITKANESLFLHVY--PYDYV------I--FPKNVKCSTCKIRKPARSKHCSICNRCVHRFD 176 (341)
T ss_pred HHHHHHHHHhhhhcCCCCccchhhhccceecc--Cccce------e--ecCCCccccccCCCccccccchHHHHHHHHhc
Confidence 34456678888999999998875322111111 11100 0 01136799999999999999999999999999
Q ss_pred CcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcC-CCCCCC---cccccccccccccchhhhh--------
Q 012055 243 HHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTD-PVAPSS---FGAWMSYASTHHIGALSFL-------- 310 (472)
Q Consensus 243 HHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~-------- 310 (472)
|||.|+|||||++|.|||++|+++....+.+..+-..+-.+.. .+.++. ...|-..... .-..+..+
T Consensus 177 HHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ilt~~~g~~ks-~~~L~~yl~la~~~~v 255 (341)
T KOG1312|consen 177 HHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVYILTLGHGHVKS-TVFLIQYLFLAFPRIV 255 (341)
T ss_pred cceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchheeeeeeeecchhh-HHHHHHHHHHHhccce
Confidence 9999999999999999999999988666655444333221211 111111 0000000000 00000000
Q ss_pred -hhhH-HHHHHHHHHHHHHHHHHhhchhhHHhHhhhhhhhhhc----------CCCCccCCCCHhHHHHHHHhccCC
Q 012055 311 -IADF-SLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRG----------AGGRFRNPYDHGCKRNCSDFLING 375 (472)
Q Consensus 311 -~~~~-~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~r~~~~~~----------~~~~~~npy~~G~~~N~~~f~~~~ 375 (472)
+.++ ..+.++++.+.+-+|.-++|+||.|+...+ +.+... ..++-+|.-..|...|+.+++.+|
T Consensus 256 ~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~d-~a~~~~~~~v~~~~~A~d~~h~N~~~~~t~S~i~nIyd~g 331 (341)
T KOG1312|consen 256 FMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRGD-WAWCQRCPLVAWPPSAEDQVHRNIHSHGTRSNIQNIYDPG 331 (341)
T ss_pred eeeehhhhhhHhHHHHHHHHHHHhccCCchhhhccc-hHhhhcCcccccCCccccchhcccceeeehhhchhhccCc
Confidence 1111 112335566777889999999999988663 333221 112233445555566666666555
No 9
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.91 E-value=4.7e-25 Score=223.96 Aligned_cols=433 Identities=20% Similarity=0.135 Sum_probs=266.1
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
-|-|+|||||.+++.+++++|+++|||+|..+ ..+.||||||+.+|+..++++|+++| ||++.+|.+|.+|+|+|++
T Consensus 77 ~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhG--Adpt~~D~~G~~~lHla~~ 154 (600)
T KOG0509|consen 77 EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHG--ADPTLKDKQGLTPLHLAAQ 154 (600)
T ss_pred CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcC--CCCceecCCCCcHHHHHHH
Confidence 47899999999999999999999999999998 67999999999999999999999999 9999999999999999999
Q ss_pred cCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcch-----------------------hHHHHHHHHhhheeeeEEe
Q 012055 87 KNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAP-----------------------ALWCVILLMLVTYMHSVIM 142 (472)
Q Consensus 87 ~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p-----------------------~l~~iii~ll~~yi~~~~~ 142 (472)
.++.-++-+|+..+++++ ++.+|+||+......+..+ .-|.++..-+.... .+.
T Consensus 155 ~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~--Ll~ 232 (600)
T KOG0509|consen 155 FGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK--LLL 232 (600)
T ss_pred hCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEe--hhh
Confidence 999998888887777666 7888999998766655444 23322211111111 110
Q ss_pred ec-----------cCchhhH-HH-------------------HHHHH--HHHHHHHHHHHHHhhhhccCCCccccCCCCC
Q 012055 143 AS-----------NLPKLTA-GF-------------------GLLAW--SGVFLATGGLVLFYRCSRKDPGYIRMNVHDP 189 (472)
Q Consensus 143 ~~-----------~l~~~~~-~~-------------------~~~~~--~~~~l~~~~l~~~~~~~~~dPG~i~~~~~~~ 189 (472)
.. ..|..-+ .- -.+.| .........+..++.++..+||++-.... .
T Consensus 233 ~g~~~~d~~~~~g~tp~~LA~~~~~~~~~~h~~~~~~~~~~~K~~~~~~~~~~~~f~~~~~~~~~~~~~~g~i~~~~~-~ 311 (600)
T KOG0509|consen 233 EGGADLDKTNTNGKTPFDLAQERKLVAALHHDVVERLGKVVKKWFLGSKLAALIFFIFLGLFYFISSWLPGVIFLINS-L 311 (600)
T ss_pred hcCCcccccccCCCCHHHHHHHhhhHHHhhccHHHhhcccccchhhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh-H
Confidence 00 0000000 00 00011 11111111455667788889999875421 1
Q ss_pred CCCCCChhhhhhhccCcchhcCcccccccccccccCCCCccCccccchhccccCcCcccCcccccCChHHHHHHHHHHHH
Q 012055 190 QNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVS 269 (472)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~~~~ 269 (472)
.. .....+....+...|.+|.+..+.+..+|..+-.|+..+++||+|+. ||+.+|-..|.+..+..++
T Consensus 312 --------w~---i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l 379 (600)
T KOG0509|consen 312 --------WL---IKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVL 379 (600)
T ss_pred --------HH---HhhhhhhhhhhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHH
Confidence 11 11123334456789999999999999999999999999999999999 9999998887666665555
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCcccccccccccccchhhhhhh-hHHHHHHHHHHHHHHHHHHhhchhhHHhHhhhhhhh
Q 012055 270 AMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIA-DFSLFFGVAVLTAVQASQISRNITTNEMANALRYNY 348 (472)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~r~~~ 348 (472)
.+++.++..+. .++........+........+-..-+..- .+-...++---+..+-..++...++.+..+=-.+.+
T Consensus 380 ~~~~~f~~~~r---sDPg~i~~~~~~~~~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~n 456 (600)
T KOG0509|consen 380 AYFITFGLFLR---SDPGFIPTSTEVGRETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGN 456 (600)
T ss_pred HHHHHHHHHhc---cCCCCCCCchhhHHHHHHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCcccc
Confidence 55554444332 44433222222221100000000000000 000111111122334455666666666444334445
Q ss_pred hhcCCCCccCCCCHhHHHHHHHhccCCccCCcccccc--CCCCCCccccccccCCCCCCCCCCccccCCCCceeeecCCC
Q 012055 349 LRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVED--SAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSN 426 (472)
Q Consensus 349 ~~~~~~~~~npy~~G~~~N~~~f~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (472)
+.+.++....+|......+...|+..+..+....... ..-++.+..||+-++++.++|.-+.+.+..--+++....-
T Consensus 457 cVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~- 535 (600)
T KOG0509|consen 457 CVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENASTIYVGFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKC- 535 (600)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCccceeeeeeccccccccccccccc-
Confidence 5666666678888888888877766543322222222 2235668899999999888755554444331111111111
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCcccccccccCCCCccccc
Q 012055 427 NTNSHHGHLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVV 470 (472)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (472)
+|-.++ |.|. +.-..+..+...++|.-|+..|+.+
T Consensus 536 ------~~~~~~-c~~~--tt~e~~n~~r~~~~~~~~~~~~~~~ 570 (600)
T KOG0509|consen 536 ------QHYNCA-CLHL--TTNEQINVKRYEHLGIKRGPTRSPF 570 (600)
T ss_pred ------ccccee-eecc--cHHHHHHHHHhhccccccCcCCCCC
Confidence 222233 5554 2233566888888888888766554
No 10
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.8e-20 Score=159.85 Aligned_cols=114 Identities=27% Similarity=0.340 Sum_probs=105.6
Q ss_pred hCchHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCCCHhhhhh
Q 012055 8 IMTEEAHCIAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLAS 85 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll-~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~d~~g~TpL~~A~ 85 (472)
=|+|||||||..|+.+++.+|+ +.+..+|.+|..|+||||.|+..|+.|+|+.|+.+ | +|++..+..|.||||+|+
T Consensus 37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~--advna~tn~G~T~LHyAa 114 (226)
T KOG4412|consen 37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSG--ADVNATTNGGQTCLHYAA 114 (226)
T ss_pred cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCC--CCcceecCCCcceehhhh
Confidence 4899999999999999999999 67888999999999999999999999999999999 6 999999999999999999
Q ss_pred hcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcch
Q 012055 86 DKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAP 123 (472)
Q Consensus 86 ~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p 123 (472)
.+|..+++.+|.+.++.+. ++.-+.||+|+....|..-
T Consensus 115 gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklk 153 (226)
T KOG4412|consen 115 GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK 153 (226)
T ss_pred cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchh
Confidence 9999999999999887766 6778999999998887643
No 11
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.4e-18 Score=149.35 Aligned_cols=109 Identities=25% Similarity=0.256 Sum_probs=100.6
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhh
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 84 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~-gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A 84 (472)
+..|+||||.||..|+.++|+.|+.+ |+|+|..+..|+|+||+|+..|..|++++|++.| +.++.+|+.|.||||-|
T Consensus 69 DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g--a~i~~kD~~~qtplHRA 146 (226)
T KOG4412|consen 69 DDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG--ALIRIKDKQGQTPLHRA 146 (226)
T ss_pred cccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcC--CCCcccccccCchhHHH
Confidence 34599999999999999999999988 9999999999999999999999999999999999 89999999999999999
Q ss_pred hhcCchhHHHHHHhhhhhcc-cCCCCCCCCccc
Q 012055 85 SDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKI 116 (472)
Q Consensus 85 ~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~ 116 (472)
+..|..+++++|...++..+ .+..|.|||+..
T Consensus 147 AavGklkvie~Li~~~a~~n~qDk~G~TpL~~a 179 (226)
T KOG4412|consen 147 AAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA 179 (226)
T ss_pred HhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence 99999999999998876655 666788888665
No 12
>PHA02791 ankyrin-like protein; Provisional
Probab=99.59 E-value=4.6e-15 Score=144.42 Aligned_cols=110 Identities=18% Similarity=0.074 Sum_probs=86.0
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
-|+||||+|+..|+.++++.|++.|++++.+| |.||||+|+..|+.++++.|++.| ++++.+|..|.||||+|+..
T Consensus 29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~G--advn~~d~~G~TpLh~Aa~~ 104 (284)
T PHA02791 29 HGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG--MDDSQFDDKGNTALYYAVDS 104 (284)
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHc
Confidence 37888888888888888888888888887664 578888888888888888888888 78888888888888888888
Q ss_pred CchhHHHHHHhhhhhcc-cCCCC-CCCCccccccCc
Q 012055 88 NHRQVAFFLGNARRLLD-KRCDG-NSPIGKISKLGL 121 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~-~~~~~-~tpl~~~~k~g~ 121 (472)
++.+++++|.+.++..+ ++..| .||++.....+.
T Consensus 105 g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~ 140 (284)
T PHA02791 105 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 140 (284)
T ss_pred CCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCC
Confidence 88888888888776654 33344 477776554443
No 13
>PHA02741 hypothetical protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=131.36 Aligned_cols=112 Identities=22% Similarity=0.140 Sum_probs=96.8
Q ss_pred hCchHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCccccccC-C
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGN----LEACTVLVQAGKKEDLMVTDN-T 76 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~------~gad~n~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~g~~~~~~~~d~-~ 76 (472)
.|.||||+|+..|+.++++.|+. .|++++.+|..|.||||+|+..|+ .+++++|++.| ++++.+|. .
T Consensus 20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g--adin~~~~~~ 97 (169)
T PHA02741 20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG--ADINAQEMLE 97 (169)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC--CCCCCCCcCC
Confidence 48999999999999999998853 368899999999999999999998 58899999999 89998885 8
Q ss_pred CCCHhhhhhhcCchhHHHHHHh-hhhhcc-cCCCCCCCCccccccCc
Q 012055 77 GLTPAQLASDKNHRQVAFFLGN-ARRLLD-KRCDGNSPIGKISKLGL 121 (472)
Q Consensus 77 g~TpL~~A~~~~~~~i~~~L~~-~~~~~~-~~~~~~tpl~~~~k~g~ 121 (472)
|.||||+|+..++.+++++|.. .+...+ ++.+|.||++.....+.
T Consensus 98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~ 144 (169)
T PHA02741 98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED 144 (169)
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC
Confidence 9999999999999999999886 455544 67788999887666553
No 14
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.55 E-value=7.1e-15 Score=136.33 Aligned_cols=108 Identities=23% Similarity=0.218 Sum_probs=99.9
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
-|-+||||||..|+..+++.|+..|+.+|..+....||||+|+..|+.++++.|+++. +|+|+.|..|.||||+|+.-
T Consensus 33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~k--advnavnehgntplhyacfw 110 (448)
T KOG0195|consen 33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRK--ADVNAVNEHGNTPLHYACFW 110 (448)
T ss_pred cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHh--cccchhhccCCCchhhhhhh
Confidence 4779999999999999999999999999999998999999999999999999999998 89999999999999999999
Q ss_pred CchhHHHHHHhhhhhcc-cCCCCCCCCcccc
Q 012055 88 NHRQVAFFLGNARRLLD-KRCDGNSPIGKIS 117 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~ 117 (472)
|+.++++-|.+.++.+. .+.+|.+|+.+.+
T Consensus 111 gydqiaedli~~ga~v~icnk~g~tpldkak 141 (448)
T KOG0195|consen 111 GYDQIAEDLISCGAAVNICNKKGMTPLDKAK 141 (448)
T ss_pred cHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence 99999998888887765 6778999987643
No 15
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.55 E-value=2e-14 Score=129.40 Aligned_cols=93 Identities=24% Similarity=0.209 Sum_probs=61.0
Q ss_pred CchHHHHHHHcCCHH---HHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCCCHhhh
Q 012055 9 MTEEAHCIAYKGFAD---CIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~---~v~~Ll~~gad~n~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~~g~TpL~~ 83 (472)
|+||||+|+..|+.+ ++++|++.|+++|.+| ..|.||||+|+..|+.+++++|++ .| ++++.+|..|.||||+
T Consensus 57 g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g--ad~~~~d~~g~tpL~~ 134 (166)
T PHA02743 57 GRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLG--VNLGAINYQHETAYHI 134 (166)
T ss_pred CCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC--CCccCcCCCCCCHHHH
Confidence 666777777666543 3566667777776666 366777777777777777776664 56 6666666667777777
Q ss_pred hhhcCchhHHHHHHhhhhhc
Q 012055 84 ASDKNHRQVAFFLGNARRLL 103 (472)
Q Consensus 84 A~~~~~~~i~~~L~~~~~~~ 103 (472)
|+..++.+++++|.+.++..
T Consensus 135 A~~~~~~~iv~~Ll~~ga~~ 154 (166)
T PHA02743 135 AYKMRDRRMMEILRANGAVC 154 (166)
T ss_pred HHHcCCHHHHHHHHHcCCCC
Confidence 77666666666666655443
No 16
>PHA02791 ankyrin-like protein; Provisional
Probab=99.55 E-value=1.8e-14 Score=140.25 Aligned_cols=113 Identities=21% Similarity=0.106 Sum_probs=99.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCC-CCHhhhhhhc
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTG-LTPAQLASDK 87 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g-~TpL~~A~~~ 87 (472)
|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++++.|++.| ++++.++..| .||||+|+..
T Consensus 61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g--adin~~~~~g~~TpL~~Aa~~ 138 (284)
T PHA02791 61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN--WRLMFYGKTGWKTSFYHAVML 138 (284)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCcHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999999999999999 8888888888 4899999999
Q ss_pred CchhHHHHHHhhhhhcccCCCCCCCCccccccCcch
Q 012055 88 NHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAP 123 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~~~~~~~tpl~~~~k~g~~p 123 (472)
|+.+++++|.+.+........+.|||+...+.|...
T Consensus 139 g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~e 174 (284)
T PHA02791 139 NDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD 174 (284)
T ss_pred CCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHH
Confidence 999999999886543222224789998888877644
No 17
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.55 E-value=3.4e-14 Score=113.93 Aligned_cols=86 Identities=28% Similarity=0.370 Sum_probs=79.7
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhH
Q 012055 13 AHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 92 (472)
Q Consensus 13 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i 92 (472)
||+|+..|+.++++.|++.+.+++. |+||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++.++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENG--ADINSQDKNGNTALHYAAENGNLEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTT--TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhc--ccccccCCCCCCHHHHHHHcCCHHH
Confidence 7999999999999999999988877 889999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhhhhhcc
Q 012055 93 AFFLGNARRLLD 104 (472)
Q Consensus 93 ~~~L~~~~~~~~ 104 (472)
+++|.+.+..++
T Consensus 75 ~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 75 VKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHTTT-TT
T ss_pred HHHHHHcCCCCC
Confidence 999998877654
No 18
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.52 E-value=4e-14 Score=147.20 Aligned_cols=111 Identities=22% Similarity=0.270 Sum_probs=101.8
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
.|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..
T Consensus 123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~~ 200 (434)
T PHA02874 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG--AYANVKDNNGESPLHNAAEY 200 (434)
T ss_pred CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHc
Confidence 4889999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CchhHHHHHHhhhhhcc-cCCCCCCCCccccccC
Q 012055 88 NHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLG 120 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g 120 (472)
|+.+++++|.+.++... ++.+|.||++.....+
T Consensus 201 g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~ 234 (434)
T PHA02874 201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN 234 (434)
T ss_pred CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCC
Confidence 99999999998877654 5567889988766544
No 19
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.52 E-value=1.1e-14 Score=143.14 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=96.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 88 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~ 88 (472)
..|||.-||..|+.+++++|+++|+|++..|+.|.|.||+|+.+|+.+++++|++.| +|++.++..|.|+||.+++.|
T Consensus 117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g--ADvn~ks~kGNTALH~caEsG 194 (615)
T KOG0508|consen 117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG--ADVNAKSYKGNTALHDCAESG 194 (615)
T ss_pred CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhC--CCcchhcccCchHHHhhhhcc
Confidence 358888888888888888888888888888888888888888888888888888888 888888888888888888888
Q ss_pred chhHHHHHHhhhhhcccCCCCCCCCccccccCcchhH
Q 012055 89 HRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPAL 125 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~~~~~~~tpl~~~~k~g~~p~l 125 (472)
+.|++++|.+.++..+++..|-||+-..+..|...++
T Consensus 195 ~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iV 231 (615)
T KOG0508|consen 195 SVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIV 231 (615)
T ss_pred cHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHH
Confidence 8888888888888888887788888777777766544
No 20
>PHA02741 hypothetical protein; Provisional
Probab=99.52 E-value=8.9e-14 Score=125.59 Aligned_cols=93 Identities=28% Similarity=0.215 Sum_probs=86.6
Q ss_pred hCchHHHHHHHcCC----HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCCCHh
Q 012055 8 IMTEEAHCIAYKGF----ADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPA 81 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~----~~~v~~Ll~~gad~n~~d~-~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~~g~TpL 81 (472)
.|+||||+|+..|+ .+++++|++.|+++|.+|. .|.||||+|+..++.+++++|++ .| ++++.+|..|.|||
T Consensus 59 ~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g--~~~~~~n~~g~tpL 136 (169)
T PHA02741 59 AGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG--IDLHFCNADNKSPF 136 (169)
T ss_pred CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCCHH
Confidence 48999999999999 5899999999999999985 89999999999999999999997 48 89999999999999
Q ss_pred hhhhhcCchhHHHHHHhhhhh
Q 012055 82 QLASDKNHRQVAFFLGNARRL 102 (472)
Q Consensus 82 ~~A~~~~~~~i~~~L~~~~~~ 102 (472)
++|...++.+++++|.+.++.
T Consensus 137 ~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 137 ELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999987655
No 21
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.52 E-value=5.4e-14 Score=131.47 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=92.7
Q ss_pred hCchHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccccCCCCCHh
Q 012055 8 IMTEEAHCIAYKG--FADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIR---GNLEACTVLVQAGKKEDLMVTDNTGLTPA 81 (472)
Q Consensus 8 ~G~TpLh~Aa~~g--~~~~v~~Ll~~gad~n~~d-~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL 81 (472)
.|.||||+|+..+ +.+++++|++.|++++.+| ..|.||||+|+.. ++.+++++|+++| ++++.+|..|.|||
T Consensus 50 ~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g--adin~~d~~G~TpL 127 (209)
T PHA02859 50 LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG--SSITEEDEDGKNLL 127 (209)
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCC--CCCCCcCCCCCCHH
Confidence 4899999999854 8999999999999999987 4899999998764 4789999999999 89999999999999
Q ss_pred hhhhh--cCchhHHHHHHhhhhhcc-cCCCCCCCCccc
Q 012055 82 QLASD--KNHRQVAFFLGNARRLLD-KRCDGNSPIGKI 116 (472)
Q Consensus 82 ~~A~~--~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~ 116 (472)
|.|+. .++.+++++|.+.+..++ ++.+|.||++..
T Consensus 128 h~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~ 165 (209)
T PHA02859 128 HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSY 165 (209)
T ss_pred HHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence 99876 457899999998887665 677899999863
No 22
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.51 E-value=6.1e-14 Score=136.75 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=97.0
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc-cCCCCCHhhhh
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQD----KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT-DNTGLTPAQLA 84 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d----~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~-d~~g~TpL~~A 84 (472)
.++||.|+..|+.+++++|++.|+|+|.+| ..|.||||+|+..++.+++++|+++| ++++.+ +..|.||||.|
T Consensus 34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G--ADVN~~~~~~g~TpLh~A 111 (300)
T PHA02884 34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG--ADVNRYAEEAKITPLYIS 111 (300)
T ss_pred CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCcCcccCCCCCCHHHHH
Confidence 356778888899999999999999999974 58999999999999999999999999 899986 46799999999
Q ss_pred hhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCc
Q 012055 85 SDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGL 121 (472)
Q Consensus 85 ~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~ 121 (472)
+..++.+++++|.+.++.++ ++.+|.||++.....+.
T Consensus 112 a~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~ 149 (300)
T PHA02884 112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN 149 (300)
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence 99999999999999988776 56778999987665443
No 23
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.51 E-value=6.2e-14 Score=131.07 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=91.1
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccccc-CCCCCHhh
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG--NLEACTVLVQAGKKEDLMVTD-NTGLTPAQ 82 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~d-~~g~TpL~ 82 (472)
+-.+.||||+|+..|+.+.++.|++. ++.+|..|.||||+|+..+ +.+++++|++.| ++++.++ ..|.||||
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g--advn~~~~~~g~TpLh 92 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENG--ADVNFKTRDNNLSALH 92 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCC--CCCCccCCCCCCCHHH
Confidence 33478999999999999999999975 5667889999999999854 899999999999 8998887 48999999
Q ss_pred hhhhc---CchhHHHHHHhhhhhcc-cCCCCCCCCcccc
Q 012055 83 LASDK---NHRQVAFFLGNARRLLD-KRCDGNSPIGKIS 117 (472)
Q Consensus 83 ~A~~~---~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~ 117 (472)
+|+.. ++.+++++|.+.++.++ ++.+|.||++...
T Consensus 93 ~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~ 131 (209)
T PHA02859 93 HYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYM 131 (209)
T ss_pred HHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 98754 46899999998888776 6678999998653
No 24
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.51 E-value=4.7e-14 Score=148.47 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=98.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc-
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK- 87 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~- 87 (472)
|.||||+|+..|+.+++++|++.|++++.+|..|.||||.|+..|+.++++.|++.| ++++.+|..|.||||+|+..
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g--a~in~~d~~g~TpLh~A~~~~ 245 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG--ASTDARDKCGNTPLHISVGYC 245 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999 89999999999999999975
Q ss_pred CchhHHHHHHhhhhhcccC--CCCCCCCccc
Q 012055 88 NHRQVAFFLGNARRLLDKR--CDGNSPIGKI 116 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~~~--~~~~tpl~~~ 116 (472)
++.+++++|.+.++.++.. ..|.||++..
T Consensus 246 ~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A 276 (477)
T PHA02878 246 KDYDILKLLLEHGVDVNAKSYILGLTALHSS 276 (477)
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence 6899999999988877643 3688999876
No 25
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.50 E-value=6.9e-14 Score=144.46 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=90.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 88 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~ 88 (472)
|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++++.|++.| ++++.+|..|.||||+|+..|
T Consensus 102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g~TpL~~A~~~g 179 (413)
T PHA02875 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK--ACLDIEDCCGCTPLIIAMAKG 179 (413)
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcC
Confidence 789999999999999999999999999998889999999999999999999999998 788888999999999999999
Q ss_pred chhHHHHHHhhhhhccc-CCCC-CCCCccccc
Q 012055 89 HRQVAFFLGNARRLLDK-RCDG-NSPIGKISK 118 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~~-~~~~-~tpl~~~~k 118 (472)
+.+++++|.+.++.++. +.++ .+|++....
T Consensus 180 ~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~ 211 (413)
T PHA02875 180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIE 211 (413)
T ss_pred CHHHHHHHHhCCCCCCcCCCCCCchHHHHHHH
Confidence 99999988888777653 3333 355553333
No 26
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.50 E-value=4.8e-14 Score=146.93 Aligned_cols=118 Identities=29% Similarity=0.339 Sum_probs=106.2
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCCCHhhhh
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPAQLA 84 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~~g~TpL~~A 84 (472)
+..|.||||+||+.|+++.++.|+..|++++.++.++.||||.||..|+..+++.|++ .+. ..++..|..|.||||+|
T Consensus 270 d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~-rllne~D~~g~tpLHla 348 (929)
T KOG0510|consen 270 DNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDT-RLLNESDLHGMTPLHLA 348 (929)
T ss_pred cccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCc-cccccccccCCCchhhh
Confidence 4458999999999999999999999999999999999999999999999999999999 442 66788899999999999
Q ss_pred hhcCchhHHHHHHhhhhhccc----CCCCCCCCccccccCcchh
Q 012055 85 SDKNHRQVAFFLGNARRLLDK----RCDGNSPIGKISKLGLAPA 124 (472)
Q Consensus 85 ~~~~~~~i~~~L~~~~~~~~~----~~~~~tpl~~~~k~g~~p~ 124 (472)
++.||..++++|.+.|+.... +.+|+|+||-..+.|....
T Consensus 349 a~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~a 392 (929)
T KOG0510|consen 349 AKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSA 392 (929)
T ss_pred hhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHH
Confidence 999999999999998877653 8889999998888776543
No 27
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.49 E-value=5.6e-14 Score=121.47 Aligned_cols=105 Identities=25% Similarity=0.202 Sum_probs=77.4
Q ss_pred HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchh
Q 012055 13 AHCIAYKGFADCIRLLLFLDAY-RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ 91 (472)
Q Consensus 13 Lh~Aa~~g~~~~v~~Ll~~gad-~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~ 91 (472)
+.||+..+....|+.|++..++ +|.+|.+|.||||-|+.+|+.++++.|+..| ++.+.+...|+||||-|+.-++.+
T Consensus 67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g--An~~a~T~~GWTPLhSAckWnN~~ 144 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG--ANKEAKTNEGWTPLHSACKWNNFE 144 (228)
T ss_pred HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc--CCcccccccCccchhhhhcccchh
Confidence 4577777777777777765554 6777888888888888888888888888777 777777778888888888877788
Q ss_pred HHHHHHhhhhhcccCCC-CCCCCcccccc
Q 012055 92 VAFFLGNARRLLDKRCD-GNSPIGKISKL 119 (472)
Q Consensus 92 i~~~L~~~~~~~~~~~~-~~tpl~~~~k~ 119 (472)
++.+|++.+++++...+ ..|||+.....
T Consensus 145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~ 173 (228)
T KOG0512|consen 145 VAGRLLQHGADVNAQTKGLLTPLHLAAGN 173 (228)
T ss_pred HHHHHHhccCcccccccccchhhHHhhcc
Confidence 88877777777664443 44777765544
No 28
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.49 E-value=4.4e-14 Score=125.51 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=66.7
Q ss_pred CchHHHHHHHcCCH---HHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCCCHhhh
Q 012055 9 MTEEAHCIAYKGFA---DCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 9 G~TpLh~Aa~~g~~---~~v~~Ll~~gad~n~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~d~~g~TpL~~ 83 (472)
|+||||+|+..|+. +++++|++.|++++.+|. .|.||||+|+..|+.+++++|++. | ++++.+|..|.||||+
T Consensus 55 g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g--~d~n~~~~~g~tpL~~ 132 (154)
T PHA02736 55 GKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG--VNMEILNYAFKTPYYV 132 (154)
T ss_pred CCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCC--CCCccccCCCCCHHHH
Confidence 66777777777665 356777777777777763 777777777777777777777763 6 6777777777777777
Q ss_pred hhhcCchhHHHHHHhhhh
Q 012055 84 ASDKNHRQVAFFLGNARR 101 (472)
Q Consensus 84 A~~~~~~~i~~~L~~~~~ 101 (472)
|+..++.+++++|.+.++
T Consensus 133 A~~~~~~~i~~~Ll~~ga 150 (154)
T PHA02736 133 ACERHDAKMMNILRAKGA 150 (154)
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 777777777777766554
No 29
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.48 E-value=3.7e-14 Score=126.99 Aligned_cols=113 Identities=22% Similarity=0.125 Sum_probs=99.3
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
+|-|||+||+.+|++++|++|++.|+|++...+...++|.+|+..|..++|+.|+.++ .|+|..|.+|.|||-+|++.
T Consensus 159 ~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~--vdVNvyDwNGgTpLlyAvrg 236 (296)
T KOG0502|consen 159 FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE--VDVNVYDWNGGTPLLYAVRG 236 (296)
T ss_pred cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC--CCcceeccCCCceeeeeecC
Confidence 5899999999999999999999999999998888899999999999999999999999 89999999999999999999
Q ss_pred CchhHHHHHHhhhhhccc-CCCCCCCCccccccCcc
Q 012055 88 NHRQVAFFLGNARRLLDK-RCDGNSPIGKISKLGLA 122 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~~-~~~~~tpl~~~~k~g~~ 122 (472)
++.+|++.|++.++.+.. +..|..++.....+|+-
T Consensus 237 nhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr 272 (296)
T KOG0502|consen 237 NHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR 272 (296)
T ss_pred ChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence 999999999988887663 44466666555555544
No 30
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.46 E-value=1.8e-13 Score=143.94 Aligned_cols=115 Identities=22% Similarity=0.210 Sum_probs=97.6
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH------------------------------
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE------------------------------ 56 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~------------------------------ 56 (472)
.++.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+
T Consensus 35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ 114 (477)
T PHA02878 35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV 114 (477)
T ss_pred ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence 46889999999999999999999999999999999999999999876543
Q ss_pred ----------------------------------HHHHHHHcCCCCccccccCC-CCCHhhhhhhcCchhHHHHHHhhhh
Q 012055 57 ----------------------------------ACTVLVQAGKKEDLMVTDNT-GLTPAQLASDKNHRQVAFFLGNARR 101 (472)
Q Consensus 57 ----------------------------------~v~~Ll~~g~~~~~~~~d~~-g~TpL~~A~~~~~~~i~~~L~~~~~ 101 (472)
+++.|+++| ++++.+|.. |.||||+|+..|+.+++++|.+.++
T Consensus 115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g--adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga 192 (477)
T PHA02878 115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG--ADINMKDRHKGNTALHYATENKDQRLTELLLSYGA 192 (477)
T ss_pred HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC--CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence 556666677 778888888 9999999999999999999998887
Q ss_pred hcc-cCCCCCCCCccccccCcch
Q 012055 102 LLD-KRCDGNSPIGKISKLGLAP 123 (472)
Q Consensus 102 ~~~-~~~~~~tpl~~~~k~g~~p 123 (472)
.++ ++.+|.||++...+.+...
T Consensus 193 d~n~~d~~g~tpLh~A~~~~~~~ 215 (477)
T PHA02878 193 NVNIPDKTNNSPLHHAVKHYNKP 215 (477)
T ss_pred CCCCcCCCCCCHHHHHHHhCCHH
Confidence 765 5677899998776665443
No 31
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.46 E-value=2.2e-13 Score=122.68 Aligned_cols=112 Identities=18% Similarity=0.105 Sum_probs=95.6
Q ss_pred hCchHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCcccccc-CCCCC
Q 012055 8 IMTEEAHCIAYKGFA----DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA---CTVLVQAGKKEDLMVTD-NTGLT 79 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~----~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~---v~~Ll~~g~~~~~~~~d-~~g~T 79 (472)
-+.+++|.||..|+. +++++|++.|++++.+|..|+||||+|+..|+.+. +++|++.| ++++.+| ..|.|
T Consensus 19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G--adin~~d~~~g~T 96 (166)
T PHA02743 19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG--ADINARELGTGNT 96 (166)
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC--CCCCCCCCCCCCc
Confidence 477899999999998 56667889999999999999999999999988654 79999999 8999998 58999
Q ss_pred HhhhhhhcCchhHHHHHHh-hhhhcc-cCCCCCCCCccccccCc
Q 012055 80 PAQLASDKNHRQVAFFLGN-ARRLLD-KRCDGNSPIGKISKLGL 121 (472)
Q Consensus 80 pL~~A~~~~~~~i~~~L~~-~~~~~~-~~~~~~tpl~~~~k~g~ 121 (472)
|||+|+..++.+++++|.. .+..+. ++..+.||++.....+.
T Consensus 97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~ 140 (166)
T PHA02743 97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD 140 (166)
T ss_pred HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC
Confidence 9999999999999999984 555544 66678899887766554
No 32
>PHA02946 ankyin-like protein; Provisional
Probab=99.43 E-value=4.3e-13 Score=139.45 Aligned_cols=103 Identities=19% Similarity=0.151 Sum_probs=67.7
Q ss_pred chHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 10 TEEAHCIAY--KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 10 ~TpLh~Aa~--~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
.++||.++. .++.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~ 115 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGT 115 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHc
Confidence 366666543 23456777777777777777777777777777777777777777777 66677777777777776654
Q ss_pred Cc--hhHHHHHHhhhhhcc--cCCCCCCCCc
Q 012055 88 NH--RQVAFFLGNARRLLD--KRCDGNSPIG 114 (472)
Q Consensus 88 ~~--~~i~~~L~~~~~~~~--~~~~~~tpl~ 114 (472)
+. .+++++|.+.++.++ .+.++.||++
T Consensus 116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~ 146 (446)
T PHA02946 116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL 146 (446)
T ss_pred CCchHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence 43 566666666666554 3455666664
No 33
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.42 E-value=6.8e-13 Score=127.04 Aligned_cols=95 Identities=26% Similarity=0.257 Sum_probs=88.4
Q ss_pred HhhhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhh
Q 012055 5 MFLIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 84 (472)
Q Consensus 5 ~~~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A 84 (472)
++.-|+|+||.|+..|++++|+.||..|+|+|.+|.+|.|+|+.|+.+|+.|+++.||.... +|....|.+|.|+|.+|
T Consensus 336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~-cd~sLtD~DgSTAl~IA 414 (452)
T KOG0514|consen 336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS-CDISLTDVDGSTALSIA 414 (452)
T ss_pred hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCc-ccceeecCCCchhhhhH
Confidence 45678999999999999999999999999999999999999999999999999999998864 89999999999999999
Q ss_pred hhcCchhHHHHHHhhh
Q 012055 85 SDKNHRQVAFFLGNAR 100 (472)
Q Consensus 85 ~~~~~~~i~~~L~~~~ 100 (472)
.+.||.||.-+|-.+-
T Consensus 415 leagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 415 LEAGHREIAVMLYAHM 430 (452)
T ss_pred HhcCchHHHHHHHHHH
Confidence 9999999988885443
No 34
>PHA03095 ankyrin-like protein; Provisional
Probab=99.42 E-value=4.9e-13 Score=140.40 Aligned_cols=109 Identities=24% Similarity=0.268 Sum_probs=97.7
Q ss_pred hCchHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCccccccCCCCCHhhh
Q 012055 8 IMTEEAHCIAYKG---FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG-NLEACTVLVQAGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 8 ~G~TpLh~Aa~~g---~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g-~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~ 83 (472)
.|.||||+|+..+ +.+++++|++.|+|+|.+|..|.||||+|+..| ..+++++|++.| ++++.+|..|.||||.
T Consensus 46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g--a~in~~~~~g~tpLh~ 123 (471)
T PHA03095 46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAG--ADVNAKDKVGRTPLHV 123 (471)
T ss_pred CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC--CCCCCCCCCCCCHHHH
Confidence 4899999999998 899999999999999999999999999999999 599999999999 8999999999999999
Q ss_pred hh--hcCchhHHHHHHhhhhhcc-cCCCCCCCCccccc
Q 012055 84 AS--DKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISK 118 (472)
Q Consensus 84 A~--~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k 118 (472)
|+ ..++.+++++|.+.++.++ ++..|.||++....
T Consensus 124 a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~ 161 (471)
T PHA03095 124 YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161 (471)
T ss_pred HhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 99 5567899999998887765 56778888875443
No 35
>PHA02795 ankyrin-like protein; Provisional
Probab=99.41 E-value=6.1e-13 Score=134.95 Aligned_cols=109 Identities=13% Similarity=-0.033 Sum_probs=56.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhh
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQD------KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d------~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~ 83 (472)
.||||+|+..++.+++++|++.|++.+... ..+.|++|.|+..++.+++++|+++| ++++.+|..|.||||+
T Consensus 150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G--ADIN~kD~~G~TpLh~ 227 (437)
T PHA02795 150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI--EDINQLDAGGRTLLYR 227 (437)
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc--CCcCcCCCCCCCHHHH
Confidence 455555555555555555555554322111 23455555555555555555555555 5555555555555555
Q ss_pred hhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccC
Q 012055 84 ASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLG 120 (472)
Q Consensus 84 A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g 120 (472)
|+..|+.+++++|.+.|+.++ ++.+|.||++.....|
T Consensus 228 Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g 265 (437)
T PHA02795 228 AIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRG 265 (437)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 555555555555555554443 3444555555544433
No 36
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.41 E-value=7.8e-13 Score=136.57 Aligned_cols=107 Identities=21% Similarity=0.119 Sum_probs=63.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-ccccCCCCCHhhhhhhc
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDL-MVTDNTGLTPAQLASDK 87 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~-~~~d~~g~TpL~~A~~~ 87 (472)
|.||||+|+..|+.+++++|++.|++++..+..+.||||.|+..|+.++++.|++.| ++. +..+..|.||||+|+..
T Consensus 35 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~ 112 (413)
T PHA02875 35 GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG--KFADDVFYKDGMTPLHLATIL 112 (413)
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC--CcccccccCCCCCHHHHHHHh
Confidence 777788777777777777777777777666555555555555555555555555555 222 22344455555555555
Q ss_pred CchhHHHHHHhhhhhcc-cCCCCCCCCcccc
Q 012055 88 NHRQVAFFLGNARRLLD-KRCDGNSPIGKIS 117 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~ 117 (472)
++.+++++|.+.++.++ ++.+|.||++...
T Consensus 113 ~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 113 KKLDIMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 55555555555554443 3334555555433
No 37
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.41 E-value=6.8e-13 Score=139.66 Aligned_cols=107 Identities=27% Similarity=0.259 Sum_probs=54.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCCccccccCCCCCH
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEG------CTPLHWAAIRGN--LEACTVLVQAGKKEDLMVTDNTGLTP 80 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g------~TpLh~A~~~g~--~~~v~~Ll~~g~~~~~~~~d~~g~Tp 80 (472)
|.||||+|+..|+.+++++|++.|++++..+..| .||||.|+..|+ .+++++|++.| ++++.+|..|.||
T Consensus 176 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g--~din~~d~~g~Tp 253 (480)
T PHA03100 176 GYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG--VPINIKDVYGFTP 253 (480)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC--CCCCCCCCCCCCH
Confidence 4444444444444444444444444444444444 444444444444 55555555555 4555555555555
Q ss_pred hhhhhhcCchhHHHHHHhhhhhcc-cCCCCCCCCcccc
Q 012055 81 AQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKIS 117 (472)
Q Consensus 81 L~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~ 117 (472)
||+|+..++.+++++|.+.++.++ ++.+|.||++...
T Consensus 254 L~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~ 291 (480)
T PHA03100 254 LHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI 291 (480)
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 555555555555555555554433 3444555554433
No 38
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.41 E-value=9.4e-13 Score=136.92 Aligned_cols=113 Identities=25% Similarity=0.315 Sum_probs=100.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCC-----------------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDA-----------------------YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~ga-----------------------d~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 65 (472)
|.||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 68 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g 147 (434)
T PHA02874 68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147 (434)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC
Confidence 6899999999999999988887664 56778889999999999999999999999999
Q ss_pred CCCccccccCCCCCHhhhhhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcch
Q 012055 66 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAP 123 (472)
Q Consensus 66 ~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p 123 (472)
++++.+|..|.||||+|+..++.+++++|.+.++..+ ++..|.||++...+.+...
T Consensus 148 --ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~ 204 (434)
T PHA02874 148 --ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA 204 (434)
T ss_pred --CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 8999999999999999999999999999998887655 5677899998877766543
No 39
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.40 E-value=4.7e-13 Score=131.93 Aligned_cols=114 Identities=24% Similarity=0.297 Sum_probs=104.8
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
.|.+||..|+..||.++|+.|++.|+++|.......|||--||..|+.+++++|+++| +|+++.|..|.|.|++|+.+
T Consensus 83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~g--ad~~IanrhGhTcLmIa~yk 160 (615)
T KOG0508|consen 83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHG--ADPEIANRHGHTCLMIACYK 160 (615)
T ss_pred CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcC--CCCcccccCCCeeEEeeecc
Confidence 3789999999999999999999999999998888889999999999999999999999 99999999999999999999
Q ss_pred CchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcch
Q 012055 88 NHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAP 123 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p 123 (472)
|+.+++++|.+-+++++ +...|+|.+|.-...|-.-
T Consensus 161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd 197 (615)
T KOG0508|consen 161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD 197 (615)
T ss_pred CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence 99999999998888776 6788999999877666543
No 40
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.40 E-value=6.5e-13 Score=143.46 Aligned_cols=73 Identities=21% Similarity=0.155 Sum_probs=39.0
Q ss_pred CchHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCccccccCCCCCHhhh
Q 012055 9 MTEEAHCIAYK--GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN--LEACTVLVQAGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 9 G~TpLh~Aa~~--g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~--~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~ 83 (472)
|.||||+|+.. ++.+++++|++.|+++|.+|..|.||||+|+..|+ .+++++|+++| ++++.+|..|.||||.
T Consensus 177 G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G--ADVN~kD~~G~TPLh~ 253 (764)
T PHA02716 177 GYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELG--GDMDMKCVNGMSPIMT 253 (764)
T ss_pred CCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHH
Confidence 55555554322 34555555555555555555555555555555553 35555555555 5555555555555553
No 41
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.39 E-value=1e-12 Score=146.86 Aligned_cols=111 Identities=22% Similarity=0.192 Sum_probs=63.1
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHh--------
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA-------- 81 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL-------- 81 (472)
.++||.||..|+.++++.|++.|+|+|..|..|+||||+|+..|+.++++.|+++| ++++.+|.+|.|||
T Consensus 526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g--adin~~d~~G~TpL~~A~~~g~ 603 (823)
T PLN03192 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA--CNVHIRDANGNTALWNAISAKH 603 (823)
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC--CCCCCcCCCCCCHHHHHHHhCC
Confidence 34455555555555555555555555555555555555555555555555555554 44444454455444
Q ss_pred -----------------------hhhhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcc
Q 012055 82 -----------------------QLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLA 122 (472)
Q Consensus 82 -----------------------~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~ 122 (472)
+.|+..|+.+++++|.+.+++++ ++.+|+||++.....|..
T Consensus 604 ~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~ 668 (823)
T PLN03192 604 HKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHV 668 (823)
T ss_pred HHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence 46667777777777777766655 556677777776655543
No 42
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.39 E-value=1.4e-12 Score=127.20 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=82.0
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
.|.||||+|+..++.+++++|+++|||+|.++ ..|.||||.|+..++.+++++|++.| ++++.+|..|.||+|+|++
T Consensus 69 ~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G--Adin~kd~~G~TpL~~A~~ 146 (300)
T PHA02884 69 SKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG--ADINIQTNDMVTPIELALM 146 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHH
Confidence 58999999999999999999999999999864 57999999999999999999999999 8999999999999999999
Q ss_pred cCchhHHHHHH
Q 012055 87 KNHRQVAFFLG 97 (472)
Q Consensus 87 ~~~~~i~~~L~ 97 (472)
.++.+++.++.
T Consensus 147 ~~~~~~~~~~~ 157 (300)
T PHA02884 147 ICNNFLAFMIC 157 (300)
T ss_pred hCChhHHHHhc
Confidence 88888776554
No 43
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.39 E-value=1.1e-12 Score=113.52 Aligned_cols=112 Identities=27% Similarity=0.331 Sum_probs=95.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 88 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~ 88 (472)
|.||||.|+++|+.++++.|+..||+++.+...|+||||-|+...+.+++-.|+++| +|+++......||||+|+...
T Consensus 97 ~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhg--aDVnA~t~g~ltpLhlaa~~r 174 (228)
T KOG0512|consen 97 EYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHG--ADVNAQTKGLLTPLHLAAGNR 174 (228)
T ss_pred cccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhcc--CcccccccccchhhHHhhccc
Confidence 789999999999999999999999999999999999999999999999999999999 999999999999999998876
Q ss_pred c-hhHHHHHHhhhhhcc--cCCCCCCCCccccccCcc
Q 012055 89 H-RQVAFFLGNARRLLD--KRCDGNSPIGKISKLGLA 122 (472)
Q Consensus 89 ~-~~i~~~L~~~~~~~~--~~~~~~tpl~~~~k~g~~ 122 (472)
+ ...+++|...+.+.. ++..+.+|+....+.+..
T Consensus 175 n~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s 211 (228)
T KOG0512|consen 175 NSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS 211 (228)
T ss_pred chHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence 5 455666665544322 555677787666655443
No 44
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.37 E-value=1.4e-12 Score=141.01 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=93.9
Q ss_pred hCchHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCcHHHHH------------------------------------
Q 012055 8 IMTEEAHCIAYKGF--ADCIRLLLFLDAYRGRQDKEGCTPLHWA------------------------------------ 49 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~--~~~v~~Ll~~gad~n~~d~~g~TpLh~A------------------------------------ 49 (472)
-|.||||+|+..|+ .+++++|++.|+|+|.+|..|+||||.|
T Consensus 211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~ 290 (764)
T PHA02716 211 HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT 290 (764)
T ss_pred CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHH
Confidence 48999999999995 5899999999999999999999999975
Q ss_pred -HHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh--cCchhHHHHHHhhhhhcc-cCCCCCCCCccc
Q 012055 50 -AIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD--KNHRQVAFFLGNARRLLD-KRCDGNSPIGKI 116 (472)
Q Consensus 50 -~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~--~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~ 116 (472)
+..|+.++++.|++.| ++++.+|..|+||||+|+. .++.+++++|.+.++.++ ++..|+||++..
T Consensus 291 AA~~g~leiVklLLe~G--AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A 359 (764)
T PHA02716 291 LARNIDISVVYSFLQPG--VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTY 359 (764)
T ss_pred HHHcCCHHHHHHHHhCC--CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence 3457789999999999 8999999999999999875 457899999999888765 677899999864
No 45
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.37 E-value=5.2e-13 Score=118.61 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=87.5
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCC--C-----CCCCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCcccccc-CC
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDA--Y-----RGRQDKEGCTPLHWAAIRGNL---EACTVLVQAGKKEDLMVTD-NT 76 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga--d-----~n~~d~~g~TpLh~A~~~g~~---~~v~~Ll~~g~~~~~~~~d-~~ 76 (472)
.|.||||+|+..|+. ++++...+. + ++.+|..|.||||+|+..|+. +++++|++.| ++++.+| ..
T Consensus 16 ~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g--adin~~~~~~ 91 (154)
T PHA02736 16 EGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG--ADINGKERVF 91 (154)
T ss_pred CCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC--CCccccCCCC
Confidence 389999999999984 333332222 2 334688999999999999987 4688999999 8999998 58
Q ss_pred CCCHhhhhhhcCchhHHHHHHh-hhhhcc-cCCCCCCCCccccccCcc
Q 012055 77 GLTPAQLASDKNHRQVAFFLGN-ARRLLD-KRCDGNSPIGKISKLGLA 122 (472)
Q Consensus 77 g~TpL~~A~~~~~~~i~~~L~~-~~~~~~-~~~~~~tpl~~~~k~g~~ 122 (472)
|.||||+|+..++.+++++|.. .+..++ ++..|.||++.....+..
T Consensus 92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~ 139 (154)
T PHA02736 92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA 139 (154)
T ss_pred CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH
Confidence 9999999999999999999986 355544 677789999877766543
No 46
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.36 E-value=1.5e-12 Score=94.03 Aligned_cols=54 Identities=35% Similarity=0.473 Sum_probs=45.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 62 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll 62 (472)
|+||||+||..|+.+++++|++.|+|+|.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999999999999999999999999999999999999999999886
No 47
>PHA03095 ankyrin-like protein; Provisional
Probab=99.36 E-value=2.4e-12 Score=135.09 Aligned_cols=112 Identities=21% Similarity=0.171 Sum_probs=92.0
Q ss_pred hCchHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCccccccCCCCCHhhh
Q 012055 8 IMTEEAHCIAYK--GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL--EACTVLVQAGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 8 ~G~TpLh~Aa~~--g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~--~~v~~Ll~~g~~~~~~~~d~~g~TpL~~ 83 (472)
.|+||||+|+.. ++.++++.|++.|++++.+|..|+||||+|+..|+. .+++.|++.| ++++.+|..|.||||+
T Consensus 186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g--~din~~d~~g~TpLh~ 263 (471)
T PHA03095 186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG--ISINARNRYGQTPLHY 263 (471)
T ss_pred CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC--CCCCCcCCCCCCHHHH
Confidence 478888888764 667888888888998888888899999999888864 5778888888 8888889899999999
Q ss_pred hhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCc
Q 012055 84 ASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGL 121 (472)
Q Consensus 84 A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~ 121 (472)
|+..|+.+++++|.+.++.++ ++.+|+||++.....+.
T Consensus 264 A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~ 302 (471)
T PHA03095 264 AAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNN 302 (471)
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCC
Confidence 999999999998888877766 56778888877665544
No 48
>PHA02798 ankyrin-like protein; Provisional
Probab=99.35 E-value=2.2e-12 Score=136.20 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred hCchHHHHHHHc-----CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCccccccCCCCC
Q 012055 8 IMTEEAHCIAYK-----GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG---NLEACTVLVQAGKKEDLMVTDNTGLT 79 (472)
Q Consensus 8 ~G~TpLh~Aa~~-----g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g---~~~~v~~Ll~~g~~~~~~~~d~~g~T 79 (472)
.|.||||.|+.. ++.+++++|++.|+|+|.+|..|.||||+|+..+ +.+++++|+++| ++++.+|..|.|
T Consensus 70 ~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~t 147 (489)
T PHA02798 70 EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENG--ADTTLLDKDGFT 147 (489)
T ss_pred CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC--CCccccCCCCCc
Confidence 488999998753 6689999999999999999999999999999875 689999999999 899999999999
Q ss_pred HhhhhhhcCc---hhHHHHHHhhhhhcccC--CCCCCCCccc
Q 012055 80 PAQLASDKNH---RQVAFFLGNARRLLDKR--CDGNSPIGKI 116 (472)
Q Consensus 80 pL~~A~~~~~---~~i~~~L~~~~~~~~~~--~~~~tpl~~~ 116 (472)
|||+|++.++ .+++++|.+.++.++.. ..+.+|++..
T Consensus 148 pL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~ 189 (489)
T PHA02798 148 MLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCY 189 (489)
T ss_pred HHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHH
Confidence 9999999887 89999999888776532 3567777643
No 49
>PHA02798 ankyrin-like protein; Provisional
Probab=99.34 E-value=3.3e-12 Score=134.82 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=66.2
Q ss_pred hCchHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcccccc-CCCCCH
Q 012055 8 IMTEEAHCIAYKG---FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN---LEACTVLVQAGKKEDLMVTD-NTGLTP 80 (472)
Q Consensus 8 ~G~TpLh~Aa~~g---~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~---~~~v~~Ll~~g~~~~~~~~d-~~g~Tp 80 (472)
-|+||||+|+..+ +.+++++|++.|+|++.+|..|.||||+|+..++ .+++++|+++| ++++.++ ..|.||
T Consensus 108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g--adin~~~~~~~~t~ 185 (489)
T PHA02798 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG--VDINTHNNKEKYDT 185 (489)
T ss_pred CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC--CCcccccCcCCCcH
Confidence 4889999999875 6799999999999999999999999999999887 88888888888 6665543 345555
Q ss_pred hhhhhhc----CchhHHHHHHh
Q 012055 81 AQLASDK----NHRQVAFFLGN 98 (472)
Q Consensus 81 L~~A~~~----~~~~i~~~L~~ 98 (472)
+|.+... ++.+++++|.+
T Consensus 186 Lh~~~~~~~~~~~~~ivk~Li~ 207 (489)
T PHA02798 186 LHCYFKYNIDRIDADILKLFVD 207 (489)
T ss_pred HHHHHHhccccCCHHHHHHHHH
Confidence 5554432 23444444443
No 50
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.34 E-value=3.6e-12 Score=142.39 Aligned_cols=96 Identities=27% Similarity=0.296 Sum_probs=85.7
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-------------------------------CCHH
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIR-------------------------------GNLE 56 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~-------------------------------g~~~ 56 (472)
.|+||||+||..|+.+++++|++.|+|+|.+|.+|+||||+|+.. |+.+
T Consensus 557 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~ 636 (823)
T PLN03192 557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLT 636 (823)
T ss_pred CCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHH
Confidence 489999999999999999999999999999999999999866554 4555
Q ss_pred HHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhhhhhccc
Q 012055 57 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDK 105 (472)
Q Consensus 57 ~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~~ 105 (472)
+++.|+++| +|++.+|.+|.||||.|+..|+.+++++|.+.+++++.
T Consensus 637 ~v~~Ll~~G--adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~ 683 (823)
T PLN03192 637 AMKELLKQG--LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683 (823)
T ss_pred HHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence 666777888 89999999999999999999999999999998887663
No 51
>PHA02730 ankyrin-like protein; Provisional
Probab=99.34 E-value=4.7e-12 Score=134.52 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=92.6
Q ss_pred hCchHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCccccccCCCCCHhh
Q 012055 8 IMTEEAHCIAYKG---FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG--NLEACTVLVQAGKKEDLMVTDNTGLTPAQ 82 (472)
Q Consensus 8 ~G~TpLh~Aa~~g---~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~ 82 (472)
.|+||||+|+..| +.+++++|++.|||++.+|..|.||||+|+..+ +.|++++|++.|++++.+..+..+.+|++
T Consensus 40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~ 119 (672)
T PHA02730 40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY 119 (672)
T ss_pred CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence 4899999999997 599999999999999999999999999999977 79999999999866777888888889998
Q ss_pred hhhh--cCchhHHHHHHh-hhhhcccC------CCCCCCCccccccC
Q 012055 83 LASD--KNHRQVAFFLGN-ARRLLDKR------CDGNSPIGKISKLG 120 (472)
Q Consensus 83 ~A~~--~~~~~i~~~L~~-~~~~~~~~------~~~~tpl~~~~k~g 120 (472)
.++. .++.+++++|.. .+..++.. ..+-+|+....+.+
T Consensus 120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~ 166 (672)
T PHA02730 120 SYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNP 166 (672)
T ss_pred HHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCC
Confidence 8877 888999999985 54454433 24555654444433
No 52
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.33 E-value=2e-12 Score=142.59 Aligned_cols=93 Identities=27% Similarity=0.296 Sum_probs=85.8
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
.|.||||.||..|++++|++|+++|+|++.+|+.|+||||.|+..|+.+|+++|+++| +++|..|.+|.|||++|++.
T Consensus 539 r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G--A~vna~d~~g~TpL~iA~~l 616 (1143)
T KOG4177|consen 539 RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG--ASVNAADLDGFTPLHIAVRL 616 (1143)
T ss_pred cccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC--CCCCcccccCcchhHHHHHh
Confidence 4679999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CchhHHHHHHhhhhh
Q 012055 88 NHRQVAFFLGNARRL 102 (472)
Q Consensus 88 ~~~~i~~~L~~~~~~ 102 (472)
|+.++++.|...+..
T Consensus 617 g~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 617 GYLSVVKLLKVVTAT 631 (1143)
T ss_pred cccchhhHHHhccCc
Confidence 999999988776655
No 53
>PHA02946 ankyin-like protein; Provisional
Probab=99.33 E-value=3.8e-12 Score=132.33 Aligned_cols=107 Identities=20% Similarity=0.090 Sum_probs=94.4
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccc-ccCCCCCHhhhh
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG--NLEACTVLVQAGKKEDLMV-TDNTGLTPAQLA 84 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~-~d~~g~TpL~~A 84 (472)
-|+||||+||..|+.+++++|++.|+++|.+|..|.||||+|+..+ ..+++++|+++| ++++. .|..|.|||+ |
T Consensus 71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G--adin~~~d~~g~tpL~-a 147 (446)
T PHA02946 71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG--AKINNSVDEEGCGPLL-A 147 (446)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC--CCcccccCCCCCcHHH-H
Confidence 4899999999999999999999999999999999999999998876 478999999999 88885 6889999997 6
Q ss_pred hhcCchhHHHHHHhhhhhcc-cCCCCCCCCcccc
Q 012055 85 SDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKIS 117 (472)
Q Consensus 85 ~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~ 117 (472)
+..++.+++++|.+.++..+ ++..|++|++...
T Consensus 148 a~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~ 181 (446)
T PHA02946 148 CTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHL 181 (446)
T ss_pred HHCCChHHHHHHHhccccccccCCCCCCHHHHHH
Confidence 66788999999998877665 6677899987644
No 54
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.33 E-value=3.1e-12 Score=140.54 Aligned_cols=104 Identities=20% Similarity=0.152 Sum_probs=48.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN-LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ .++++.|++.| ++++.+|..|.||||+|+..
T Consensus 375 G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g--adin~~d~~G~TpLh~Aa~~ 452 (682)
T PHA02876 375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG--ANVNSKNKDLSTPLHYACKK 452 (682)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC--CCCCcCCCCCChHHHHHHHh
Confidence 4444444444444444444444444444444444444444444333 23344444444 44455555555555555544
Q ss_pred C-chhHHHHHHhhhhhcc-cCCCCCCCCc
Q 012055 88 N-HRQVAFFLGNARRLLD-KRCDGNSPIG 114 (472)
Q Consensus 88 ~-~~~i~~~L~~~~~~~~-~~~~~~tpl~ 114 (472)
+ +.+++++|.+.++.++ ++..|+||+.
T Consensus 453 ~~~~~iv~lLl~~Gad~n~~d~~g~tpl~ 481 (682)
T PHA02876 453 NCKLDVIEMLLDNGADVNAINIQNQYPLL 481 (682)
T ss_pred CCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 3 3455555554444433 3344444443
No 55
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.33 E-value=3.2e-12 Score=134.53 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH-----HHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhh
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW-----AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~-----A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~ 83 (472)
+.||||.|+..|+.++++.|++.|++++..+..+.||||+ |+..++.++++.|++.| ++++..|..|.||||+
T Consensus 35 ~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g--a~i~~~d~~g~tpL~~ 112 (480)
T PHA03100 35 PVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG--ANVNAPDNNGITPLLY 112 (480)
T ss_pred cchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC--CCCCCCCCCCCchhhH
Confidence 5566666666666666666666666666666666666666 66666666666666666 5555566666666666
Q ss_pred hh--hcCchhHHHHHHhhhhhcc-cCCCCCCCCcccccc
Q 012055 84 AS--DKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKL 119 (472)
Q Consensus 84 A~--~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~ 119 (472)
|+ ..++.+++++|.+.++..+ .+.+|.+|++.....
T Consensus 113 A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 151 (480)
T PHA03100 113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151 (480)
T ss_pred HHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc
Confidence 66 5666666666655554443 344555555544433
No 56
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.33 E-value=1e-12 Score=125.76 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=88.4
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCC--------------------------------------CcHH
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFLDA-YRGRQDKEG--------------------------------------CTPL 46 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-d~n~~d~~g--------------------------------------~TpL 46 (472)
+-=|+|+||||+..++.++|+.||+.|. ++|.+++-| +|+|
T Consensus 265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTAL 344 (452)
T KOG0514|consen 265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTAL 344 (452)
T ss_pred cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhh
Confidence 3448999999999999999999998773 555555555 5778
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhhhh--hcccCCCCCCCCccccccC
Q 012055 47 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR--LLDKRCDGNSPIGKISKLG 120 (472)
Q Consensus 47 h~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~--~~~~~~~~~tpl~~~~k~g 120 (472)
++|+.+|+.++++.||..| +|+|++|.+|.|+|+.|+++||.|++++|+.... ..-.+.||.|.|.....-|
T Consensus 345 MLAVSHGr~d~vk~LLacg--AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag 418 (452)
T KOG0514|consen 345 MLAVSHGRVDMVKALLACG--ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG 418 (452)
T ss_pred hhhhhcCcHHHHHHHHHcc--CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence 8888889999999999999 8999999999999999999999999998875432 2225667777775544433
No 57
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.32 E-value=4.2e-12 Score=132.71 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=99.6
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAY---------------RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 71 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad---------------~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~ 71 (472)
.-|.||||.|+..|++++++..++.|+. +|..|++|.||||+|+..|+.++++.|+..| ++++
T Consensus 223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G--a~I~ 300 (929)
T KOG0510|consen 223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG--ASIN 300 (929)
T ss_pred CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC--Cccc
Confidence 3488999999999999999999988753 5677999999999999999999999999999 9999
Q ss_pred cccCCCCCHhhhhhhcCchhHHHHHHh---hhhhcccCCCCCCCCccccccCcc
Q 012055 72 VTDNTGLTPAQLASDKNHRQVAFFLGN---ARRLLDKRCDGNSPIGKISKLGLA 122 (472)
Q Consensus 72 ~~d~~g~TpL~~A~~~~~~~i~~~L~~---~~~~~~~~~~~~tpl~~~~k~g~~ 122 (472)
.++.++.||||.|+..|..+.++-|++ .+...+.+..|.||+|...+.|..
T Consensus 301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~ 354 (929)
T KOG0510|consen 301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD 354 (929)
T ss_pred ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH
Confidence 999999999999999999999997766 223445788899999987765533
No 58
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.31 E-value=1.6e-12 Score=94.58 Aligned_cols=55 Identities=45% Similarity=0.585 Sum_probs=33.2
Q ss_pred HHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhh
Q 012055 28 LLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 84 (472)
Q Consensus 28 Ll~~g-ad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A 84 (472)
|++.| ++++.+|..|+||||+|+..|+.+++++|++.| ++++.+|..|+||+|+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g--~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG--ADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT----TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc--CCCCCCcCCCCCHHHhC
Confidence 56777 899999999999999999999999999999999 99999999999999987
No 59
>PHA02795 ankyrin-like protein; Provisional
Probab=99.29 E-value=6.7e-12 Score=127.43 Aligned_cols=112 Identities=6% Similarity=-0.066 Sum_probs=95.2
Q ss_pred hCchHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-ccc-----cCCCCC
Q 012055 8 IMTEEAHCIAY--KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDL-MVT-----DNTGLT 79 (472)
Q Consensus 8 ~G~TpLh~Aa~--~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~-~~~-----d~~g~T 79 (472)
-++|+||+|++ .|+.+++++|+++|||++.++ +.||||.|+..++.+++++|+++| ++. +.. +..+.|
T Consensus 115 ~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~~~~eIVk~Lls~G--a~~~n~~~~~l~~~~~~t 190 (437)
T PHA02795 115 SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICKKESSVVEFILNCG--IPDENDVKLDLYKIIQYT 190 (437)
T ss_pred cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHcCcHHHHHHHHhcC--Ccccccccchhhhhhccc
Confidence 37999999999 899999999999999999854 489999999999999999999999 432 222 234789
Q ss_pred HhhhhhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcch
Q 012055 80 PAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAP 123 (472)
Q Consensus 80 pL~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p 123 (472)
+++.|.+.++.+++++|.+.++..+ ++.+|.||++.....+...
T Consensus 191 ~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e 235 (437)
T PHA02795 191 RGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID 235 (437)
T ss_pred hhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999987766 6778999999877666543
No 60
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.29 E-value=7.9e-12 Score=100.08 Aligned_cols=64 Identities=36% Similarity=0.473 Sum_probs=58.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 74 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d 74 (472)
|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHG--ADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTT--T-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcC
Confidence 789999999999999999999999999999999999999999999999999999999 7887665
No 61
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.29 E-value=4.7e-12 Score=98.37 Aligned_cols=100 Identities=23% Similarity=0.206 Sum_probs=77.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 88 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~ 88 (472)
|.-.+.|+..+|..+-|+.....|.++|.+- .|++|||+|+-.|+.+++++|+..| ++++.+|+.|-|||--|...|
T Consensus 2 ~d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iG--A~i~~kDKygITPLLsAvwEG 78 (117)
T KOG4214|consen 2 GDMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIG--ANIQDKDKYGITPLLSAVWEG 78 (117)
T ss_pred cchhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhc--cccCCccccCCcHHHHHHHHh
Confidence 4455678888888888888888787777644 7888888888888888888888888 788888888888888888888
Q ss_pred chhHHHHHHhhhhhcc-cCCCCCC
Q 012055 89 HRQVAFFLGNARRLLD-KRCDGNS 111 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~-~~~~~~t 111 (472)
|.+++++|+..++... +.-+|.+
T Consensus 79 H~~cVklLL~~GAdrt~~~PdG~~ 102 (117)
T KOG4214|consen 79 HRDCVKLLLQNGADRTIHAPDGTA 102 (117)
T ss_pred hHHHHHHHHHcCcccceeCCCchh
Confidence 8888888877766533 3434443
No 62
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.28 E-value=8.9e-12 Score=96.85 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=70.3
Q ss_pred hhh-CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhh
Q 012055 6 FLI-MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 84 (472)
Q Consensus 6 ~~~-G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A 84 (472)
..+ |++|||+||..|..+++++|+..|++++.+|+.|-|||..|+..|+.+||++|++.| ++...+..+|.+.+..+
T Consensus 30 ~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~G--Adrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 30 EIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNG--ADRTIHAPDGTALIEAT 107 (117)
T ss_pred HHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcC--cccceeCCCchhHHhhc
Confidence 344 899999999999999999999999999999999999999999999999999999999 88888888887766543
No 63
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.26 E-value=7.2e-12 Score=138.26 Aligned_cols=112 Identities=26% Similarity=0.346 Sum_probs=100.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 88 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~ 88 (472)
|-++||.|+..+++.+++.+++.|++++.++..|.||||.|+..|+.++|++|+++| +|++.+|+.|+||||.|+..|
T Consensus 507 ~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g--Adv~ak~~~G~TPLH~Aa~~G 584 (1143)
T KOG4177|consen 507 GLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG--ADVNAKDKLGYTPLHQAAQQG 584 (1143)
T ss_pred ccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC--ccccccCCCCCChhhHHHHcC
Confidence 567777777777888888888888999999999999999999999999999999999 999999999999999999999
Q ss_pred chhHHHHHHhhhhhcc-cCCCCCCCCccccccCcc
Q 012055 89 HRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLA 122 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~ 122 (472)
+.+|+++|.+.++.++ .+.++.||++.....|..
T Consensus 585 ~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~ 619 (1143)
T KOG4177|consen 585 HNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYL 619 (1143)
T ss_pred hHHHHHHHHHcCCCCCcccccCcchhHHHHHhccc
Confidence 9999999999998887 677899999887766543
No 64
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.26 E-value=1.6e-11 Score=129.71 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=27.4
Q ss_pred ccCCCCCHhhhhhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccC
Q 012055 73 TDNTGLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLG 120 (472)
Q Consensus 73 ~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g 120 (472)
+|..|.||||+|+..++.+++++|.+.|++++ ++..|+||++...+.+
T Consensus 252 ~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~ 300 (494)
T PHA02989 252 KDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG 300 (494)
T ss_pred CCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34446666666666666666666666555544 4445666665544443
No 65
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.26 E-value=1.7e-11 Score=129.55 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=60.1
Q ss_pred CchHHHHHHHcC------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcc-ccccCCCC
Q 012055 9 MTEEAHCIAYKG------FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIR---GNLEACTVLVQAGKKEDL-MVTDNTGL 78 (472)
Q Consensus 9 G~TpLh~Aa~~g------~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~~~-~~~d~~g~ 78 (472)
+.||||.|+..+ +.+++++|++.|+|+|.+|..|.||||.|+.. ++.+++++|+++| +|+ +.+|..|.
T Consensus 69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G--adin~~~d~~g~ 146 (494)
T PHA02989 69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG--INVNDVKNSRGY 146 (494)
T ss_pred CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC--CCcccccCCCCC
Confidence 456666655433 34566666666666666666666666655543 4566666666666 566 55666666
Q ss_pred CHhhhhhhc--CchhHHHHHHhhhhhccc--CCCCCCCCc
Q 012055 79 TPAQLASDK--NHRQVAFFLGNARRLLDK--RCDGNSPIG 114 (472)
Q Consensus 79 TpL~~A~~~--~~~~i~~~L~~~~~~~~~--~~~~~tpl~ 114 (472)
||||+|++. ++.+++++|.+.|+.+.. +..+.||++
T Consensus 147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~ 186 (494)
T PHA02989 147 NLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN 186 (494)
T ss_pred CHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHH
Confidence 666665443 355666666665555432 334555554
No 66
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.25 E-value=4.3e-11 Score=100.70 Aligned_cols=108 Identities=30% Similarity=0.392 Sum_probs=94.3
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
.-|.||||+|+..++.++++.|++.+++.+..|..|.||+|.|+..++.++++.|++.+ ++++..+..|.||+|.|+.
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--ADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999 7888889999999999999
Q ss_pred cCchhHHHHHHhhhhhcc-cCCCCCCCCccc
Q 012055 87 KNHRQVAFFLGNARRLLD-KRCDGNSPIGKI 116 (472)
Q Consensus 87 ~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~ 116 (472)
.++.+++++|.+.+.... .+..+.+|+...
T Consensus 83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~ 113 (126)
T cd00204 83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113 (126)
T ss_pred cCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 999999999988653332 344556665443
No 67
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.25 E-value=2e-11 Score=134.12 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=66.5
Q ss_pred CchHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 9 MTEEAHCIAYKGFA-DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG-NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 9 G~TpLh~Aa~~g~~-~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g-~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
|+||||+|+..++. +++++|++.|++++.+|..|.||||+|+..| +.+.++.|+..| ++++..|..|.||||.|+.
T Consensus 273 g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g--adin~~d~~g~TpLh~A~~ 350 (682)
T PHA02876 273 KNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG--ADVNAADRLYITPLHQAST 350 (682)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC--CCCCCcccCCCcHHHHHHH
Confidence 66777777776664 4666667777777777767777777777666 466666666666 5666666666666666655
Q ss_pred cC-chhHHHHHHhhhhhcc-cCCCCCCCCccccc
Q 012055 87 KN-HRQVAFFLGNARRLLD-KRCDGNSPIGKISK 118 (472)
Q Consensus 87 ~~-~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k 118 (472)
.+ ..+++++|.+.++.++ ++..|.||++....
T Consensus 351 ~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~ 384 (682)
T PHA02876 351 LDRNKDIVITLLELGANVNARDYCDKTPIHYAAV 384 (682)
T ss_pred hCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence 32 4555555555554443 44455666655443
No 68
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.25 E-value=2.9e-11 Score=131.61 Aligned_cols=87 Identities=33% Similarity=0.420 Sum_probs=84.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCch
Q 012055 11 EEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 90 (472)
Q Consensus 11 TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~ 90 (472)
+.|+.||..|+.+.++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G--advn~~d~~G~TpLh~A~~~g~~ 161 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG--ADPTLLDKDGKTPLELAEENGFR 161 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCcH
Confidence 5689999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred hHHHHHHhh
Q 012055 91 QVAFFLGNA 99 (472)
Q Consensus 91 ~i~~~L~~~ 99 (472)
+++++|.+.
T Consensus 162 ~iv~~Ll~~ 170 (664)
T PTZ00322 162 EVVQLLSRH 170 (664)
T ss_pred HHHHHHHhC
Confidence 999999876
No 69
>PHA02730 ankyrin-like protein; Provisional
Probab=99.23 E-value=2.3e-11 Score=129.25 Aligned_cols=110 Identities=16% Similarity=0.044 Sum_probs=92.1
Q ss_pred hhCchHHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCCCCcHHHH---HHHcC---------CHHHHHHHHHcCCCC
Q 012055 7 LIMTEEAHCIAYKGF----ADCIRLLLFLDA--YRGRQDKEGCTPLHW---AAIRG---------NLEACTVLVQAGKKE 68 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga--d~n~~d~~g~TpLh~---A~~~g---------~~~~v~~Ll~~g~~~ 68 (472)
.-|.||||+|+..++ .+++++|+++|+ ++|.+|..|.||||. |...+ ..+++++|+++| +
T Consensus 376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G--A 453 (672)
T PHA02730 376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM--D 453 (672)
T ss_pred CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc--c
Confidence 348999999998875 899999999998 689999999999984 33232 235699999999 8
Q ss_pred ccccccCCCCCHhhhhhhcCchhHHHHHHhhhhhccc-CC-CCCCCCccccc
Q 012055 69 DLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDK-RC-DGNSPIGKISK 118 (472)
Q Consensus 69 ~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~~-~~-~~~tpl~~~~k 118 (472)
+++.+|..|.||||+|+..++.+++++|.+.|+.++. +. .+.||++....
T Consensus 454 DINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~ 505 (672)
T PHA02730 454 DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY 505 (672)
T ss_pred chhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence 9999999999999999999999999999999887764 43 47888876543
No 70
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.19 E-value=2.9e-11 Score=108.59 Aligned_cols=103 Identities=21% Similarity=0.279 Sum_probs=90.0
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCc
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 89 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~ 89 (472)
.|+|+.|+..|..++|++|++++.|+|..|.+|-|||-+|+..++.+|++.|+..| ++++..|..|+++++.|...|+
T Consensus 194 esALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG--Ad~t~e~dsGy~~mdlAValGy 271 (296)
T KOG0502|consen 194 ESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG--ADVTQEDDSGYWIMDLAVALGY 271 (296)
T ss_pred hhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcC--CCcccccccCCcHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhHHHHHHhhhhhcccCCCCCCCCc
Q 012055 90 RQVAFFLGNARRLLDKRCDGNSPIG 114 (472)
Q Consensus 90 ~~i~~~L~~~~~~~~~~~~~~tpl~ 114 (472)
..+-..+.++....-++...++|++
T Consensus 272 r~Vqqvie~h~lkl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 272 RIVQQVIEKHALKLCQDSEKRTPLH 296 (296)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCC
Confidence 8554555555544444555566653
No 71
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.19 E-value=5e-11 Score=132.23 Aligned_cols=112 Identities=22% Similarity=0.169 Sum_probs=92.4
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQD--------------KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 73 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d--------------~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~ 73 (472)
-|.||||+||..|+.+++++|+++|+|++.++ ..|.||||.|+..|+.+++++|++.| +|++.+
T Consensus 127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g--adin~~ 204 (743)
T TIGR00870 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP--ADILTA 204 (743)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC--cchhhH
Confidence 48999999999999999999999999998653 25899999999999999999999999 899999
Q ss_pred cCCCCCHhhhhhhcC---------chhHHHHHHhhhhh--------cccCCCCCCCCccccccCc
Q 012055 74 DNTGLTPAQLASDKN---------HRQVAFFLGNARRL--------LDKRCDGNSPIGKISKLGL 121 (472)
Q Consensus 74 d~~g~TpL~~A~~~~---------~~~i~~~L~~~~~~--------~~~~~~~~tpl~~~~k~g~ 121 (472)
|..|.||||+|+..+ ..++.+++.+..+. ..++.+|.||++...+.|.
T Consensus 205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~ 269 (743)
T TIGR00870 205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR 269 (743)
T ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC
Confidence 999999999999886 22345555544333 2256789999987665543
No 72
>PHA02917 ankyrin-like protein; Provisional
Probab=99.18 E-value=4.8e-11 Score=129.26 Aligned_cols=109 Identities=12% Similarity=-0.089 Sum_probs=86.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCccccccC---CC--------
Q 012055 11 EEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA--IRGNLEACTVLVQAGKKEDLMVTDN---TG-------- 77 (472)
Q Consensus 11 TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~--~~g~~~~v~~Ll~~g~~~~~~~~d~---~g-------- 77 (472)
+++|+|+..|+.+++++|++.|+|+|.+|..|+||||.|+ ..|+.+++++|+++| ++++.+|. .|
T Consensus 105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G--a~vn~~d~~~~~g~~~~~~~~ 182 (661)
T PHA02917 105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG--CSVLYEDEDDEYGYAYDDYQP 182 (661)
T ss_pred hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC--CCccccccccccccccccccc
Confidence 5667778888889999999999999999999999998543 467899999999999 77765543 23
Q ss_pred ---CCHhhhhhh-----------cCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCc
Q 012055 78 ---LTPAQLASD-----------KNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGL 121 (472)
Q Consensus 78 ---~TpL~~A~~-----------~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~ 121 (472)
.||||+|+. .++.+++++|.+.|+.++ ++.+|.||++...+.+.
T Consensus 183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~ 241 (661)
T PHA02917 183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSH 241 (661)
T ss_pred cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCC
Confidence 599999875 357889999988888776 56788899887766553
No 73
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.15 E-value=1e-10 Score=108.92 Aligned_cols=91 Identities=31% Similarity=0.397 Sum_probs=85.4
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhh
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGR-QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 85 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~ 85 (472)
.-|.|+|..|+++|+.+++++|++.|+|+|. ++..+.||||.|+..|+.++.++|++.| +.....|.-|+|+.++|+
T Consensus 43 ~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG--a~~~~vNsvgrTAaqmAA 120 (396)
T KOG1710|consen 43 PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG--ARMYLVNSVGRTAAQMAA 120 (396)
T ss_pred CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhcc--CccccccchhhhHHHHHH
Confidence 3489999999999999999999999999998 5678999999999999999999999999 888889999999999999
Q ss_pred hcCchhHHHHHHhh
Q 012055 86 DKNHRQVAFFLGNA 99 (472)
Q Consensus 86 ~~~~~~i~~~L~~~ 99 (472)
--|+.+++..+.+.
T Consensus 121 FVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 121 FVGHHECVAIINNH 134 (396)
T ss_pred HhcchHHHHHHhcc
Confidence 99999999988764
No 74
>PHA02917 ankyrin-like protein; Provisional
Probab=99.13 E-value=1.6e-10 Score=125.19 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=84.8
Q ss_pred hCchHHHHHHHcC-----------------------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012055 8 IMTEEAHCIAYKG-----------------------FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 64 (472)
Q Consensus 8 ~G~TpLh~Aa~~g-----------------------~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 64 (472)
-|+||||.|++.+ ..++++.|+.+|+|+|.+|..|.||||+|+..++.+++++|++.
T Consensus 395 ~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~ 474 (661)
T PHA02917 395 DGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLES 474 (661)
T ss_pred CCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHC
Confidence 3899999987543 24678999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCHhhhhhh-cCchhHHHHHHhhhhhcc
Q 012055 65 GKKEDLMVTDNTGLTPAQLASD-KNHRQVAFFLGNARRLLD 104 (472)
Q Consensus 65 g~~~~~~~~d~~g~TpL~~A~~-~~~~~i~~~L~~~~~~~~ 104 (472)
| ++++.+|..|.|||++|+. .++.+++++|...++..+
T Consensus 475 G--Adin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~ 513 (661)
T PHA02917 475 G--SDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLD 513 (661)
T ss_pred c--CCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChh
Confidence 9 8999999999999999996 678999999988776543
No 75
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.13 E-value=1.1e-10 Score=84.26 Aligned_cols=54 Identities=41% Similarity=0.680 Sum_probs=45.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHH
Q 012055 42 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG 97 (472)
Q Consensus 42 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~ 97 (472)
|+||||+|+..|+.+++++|++.| .+++.+|.+|.||+|+|+..|+.+++++|.
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~--~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHG--ADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTT--SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 689999999999999999999999 899999999999999999999999999874
No 76
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.12 E-value=9.9e-11 Score=117.77 Aligned_cols=112 Identities=28% Similarity=0.330 Sum_probs=94.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK--------------------- 67 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~--------------------- 67 (472)
|.|+||-+|...+.++|++|+++|+++|.+|..|+||||.|+..|+..++++|++.|+.
T Consensus 73 glTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~ 152 (527)
T KOG0505|consen 73 GLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATL 152 (527)
T ss_pred cchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchh
Confidence 78999999999999999999999999999999999999999999999999999999842
Q ss_pred ------------------------------------CccccccCCCCCHhhhhhhcCchhHHHHHHhhhhhcc-cCCCCC
Q 012055 68 ------------------------------------EDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGN 110 (472)
Q Consensus 68 ------------------------------------~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~ 110 (472)
.+.++.+..|-|.||.|+..|..++.++|.+++..+. ++.+|.
T Consensus 153 ~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgW 232 (527)
T KOG0505|consen 153 DVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGW 232 (527)
T ss_pred HHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCC
Confidence 1122334458888888888888888888887776554 788888
Q ss_pred CCCccccccC
Q 012055 111 SPIGKISKLG 120 (472)
Q Consensus 111 tpl~~~~k~g 120 (472)
+|+|...-.+
T Consensus 233 tPlHAAA~Wg 242 (527)
T KOG0505|consen 233 TPLHAAAHWG 242 (527)
T ss_pred CcccHHHHhh
Confidence 8888766544
No 77
>PHA02792 ankyrin-like protein; Provisional
Probab=99.11 E-value=2e-10 Score=120.95 Aligned_cols=106 Identities=10% Similarity=-0.008 Sum_probs=93.1
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CcHHHHHHHcCCHH---HHHHHHHcCCCCccccccCCCCCHhhhh
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEG--CTPLHWAAIRGNLE---ACTVLVQAGKKEDLMVTDNTGLTPAQLA 84 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g--~TpLh~A~~~g~~~---~v~~Ll~~g~~~~~~~~d~~g~TpL~~A 84 (472)
..+++.||..|+.+++++|+++|||++.+|..| .||||.|+.....+ +++.|+++| ++++.+|..|.||||.|
T Consensus 340 ~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G--ADIN~kD~~G~TPLh~A 417 (631)
T PHA02792 340 INKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI--DDINKIDKHGRSILYYC 417 (631)
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC--CccccccccCcchHHHH
Confidence 456889999999999999999999999998764 69999988776654 578899999 89999999999999999
Q ss_pred hhcCchhHHHHHHhhhhhcc-cCCCCCCCCcccc
Q 012055 85 SDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKIS 117 (472)
Q Consensus 85 ~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~ 117 (472)
+..++.+++++|.+.++..+ ++..|+||++...
T Consensus 418 a~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~ 451 (631)
T PHA02792 418 IESHSVSLVEWLIDNGADINITTKYGSTCIGICV 451 (631)
T ss_pred HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 99999999999999888766 6778999987654
No 78
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.09 E-value=8.2e-10 Score=102.80 Aligned_cols=115 Identities=28% Similarity=0.329 Sum_probs=102.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCC---ccccccCCCCCH
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN-----LEACTVLVQAGKKE---DLMVTDNTGLTP 80 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~-----~~~v~~Ll~~g~~~---~~~~~d~~g~Tp 80 (472)
+.+++|.++..+..+.+++++..|++++.+|..|.||||+|+..++ .++++.|++.| + +.+.+|..|.||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g--~~~~~~~~~~~~g~tp 150 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG--ADLDVNNLRDEDGNTP 150 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcC--CCCCCccccCCCCCch
Confidence 6789999999999999999999999999999999999999999999 99999999999 6 566679999999
Q ss_pred hhhhhhcCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcchhH
Q 012055 81 AQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAPAL 125 (472)
Q Consensus 81 L~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p~l 125 (472)
+|+|+..|+.+++++|.+.++..+ ++..+.|++....+.+...+.
T Consensus 151 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 196 (235)
T COG0666 151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELV 196 (235)
T ss_pred hHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHH
Confidence 999999999999999998887766 456788888887777655433
No 79
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-10 Score=107.59 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=79.6
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCc
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 89 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~ 89 (472)
.||||.||..||.++|+.|++..+|+|+.+..|+||||+||..|...+++-|+..| +.+++-|+.|.||++-|...-.
T Consensus 68 dtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~g--a~v~icnk~g~tpldkakp~l~ 145 (448)
T KOG0195|consen 68 DTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCG--AAVNICNKKGMTPLDKAKPMLK 145 (448)
T ss_pred CcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhcc--ceeeecccCCCCchhhhchHHH
Confidence 68999999999999999999999999999999999999999999999999999999 8899999999999998765433
Q ss_pred hhHHHHHHhhhhhcc
Q 012055 90 RQVAFFLGNARRLLD 104 (472)
Q Consensus 90 ~~i~~~L~~~~~~~~ 104 (472)
..+.+.-.+.+..++
T Consensus 146 ~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 146 NTLLEIAEKHGQSPN 160 (448)
T ss_pred HHHHHHHHHhCCCCC
Confidence 333344444454443
No 80
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-10 Score=120.45 Aligned_cols=117 Identities=26% Similarity=0.284 Sum_probs=97.8
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
..|-|+||.|+.+|+.+++++|++..+-++..|..|.+|||+|++.|+.++++.|+.++ ..+++.+..|.||||.|+.
T Consensus 47 ~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~--d~~na~~~e~~tplhlaaq 124 (854)
T KOG0507|consen 47 YSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT--DILNAVNIENETPLHLAAQ 124 (854)
T ss_pred ccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcc--cCCCcccccCcCccchhhh
Confidence 35889999999999999999999998888888888999999999999999999999888 7788888899999999999
Q ss_pred cCchhHHHHHHhhhhhcc-cCCCCCCCCccccccCcchhH
Q 012055 87 KNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAPAL 125 (472)
Q Consensus 87 ~~~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~~p~l 125 (472)
+++.+++.+|+.+++++- ++..+++++.....+|-.-++
T Consensus 125 hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vv 164 (854)
T KOG0507|consen 125 HGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVV 164 (854)
T ss_pred hcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHH
Confidence 999999998888877754 566677887776666655443
No 81
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.03 E-value=1.7e-09 Score=90.82 Aligned_cols=88 Identities=35% Similarity=0.474 Sum_probs=82.8
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+..++.+++++|++.+ .+.+..|..|.||++.|..
T Consensus 38 ~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~l~~~~~ 115 (126)
T cd00204 38 NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG--ADVNARDKDGRTPLHLAAK 115 (126)
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCcccCCCCCCHHHHHHh
Confidence 35889999999999999999999999999999999999999999999999999999998 7888899999999999999
Q ss_pred cCchhHHHHH
Q 012055 87 KNHRQVAFFL 96 (472)
Q Consensus 87 ~~~~~i~~~L 96 (472)
.++.+++++|
T Consensus 116 ~~~~~~~~~L 125 (126)
T cd00204 116 NGHLEVVKLL 125 (126)
T ss_pred cCCHHHHHHh
Confidence 9999988876
No 82
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.02 E-value=9.1e-10 Score=102.49 Aligned_cols=91 Identities=27% Similarity=0.410 Sum_probs=85.2
Q ss_pred hCchHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCC
Q 012055 8 IMTEEAHCIAYKGF-----ADCIRLLLFLDA---YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 79 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---d~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~T 79 (472)
-|.||||+|+..++ .++++.|++.|+ +.+.+|..|.||||+|+..|+.++++.|++.| ++++.++..|.|
T Consensus 105 ~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~--~~~~~~~~~g~t 182 (235)
T COG0666 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG--ADPNSRNSYGVT 182 (235)
T ss_pred CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcC--CCCcccccCCCc
Confidence 48999999999999 999999999999 56667999999999999999999999999999 899999999999
Q ss_pred HhhhhhhcCchhHHHHHHhhh
Q 012055 80 PAQLASDKNHRQVAFFLGNAR 100 (472)
Q Consensus 80 pL~~A~~~~~~~i~~~L~~~~ 100 (472)
+++.|+..++.++++.+...+
T Consensus 183 ~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 183 ALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred chhhhcccchHHHHHHHHhcC
Confidence 999999999999999888764
No 83
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.00 E-value=4.2e-10 Score=81.81 Aligned_cols=43 Identities=37% Similarity=0.475 Sum_probs=30.5
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWA 49 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A 49 (472)
.-|.||||+||..|+.+++++|++.|+|++.+|..|+||||+|
T Consensus 14 ~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 14 KYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 3489999999999999999999999999999999999999987
No 84
>PHA02792 ankyrin-like protein; Provisional
Probab=98.97 E-value=1.3e-09 Score=115.00 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=73.8
Q ss_pred CchHHHHHHHcCCH---HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhh
Q 012055 9 MTEEAHCIAYKGFA---DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 85 (472)
Q Consensus 9 G~TpLh~Aa~~g~~---~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~ 85 (472)
+.||||+|+..... +++++|+++|+|+|.+|..|.||||.|+..++.+++++|+++| ++++.+|..|.||+++|.
T Consensus 374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~G--ADIN~kD~~G~TpL~~A~ 451 (631)
T PHA02792 374 NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNG--ADINITTKYGSTCIGICV 451 (631)
T ss_pred ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHH
Confidence 46999998877664 4578889999999999999999999999999999999999999 899999999999999997
Q ss_pred h---cCchhHHHHH
Q 012055 86 D---KNHRQVAFFL 96 (472)
Q Consensus 86 ~---~~~~~i~~~L 96 (472)
. .+..++++.+
T Consensus 452 ~~~~~~~~~i~~~~ 465 (631)
T PHA02792 452 ILAHACIPEIAELY 465 (631)
T ss_pred HHHhcccHHHHHHH
Confidence 5 3344444433
No 85
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-09 Score=114.76 Aligned_cols=117 Identities=21% Similarity=0.169 Sum_probs=88.2
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCC---------CC--------------CCCcHHHHHHHcCCHHHHHHHHH
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQ---------DK--------------EGCTPLHWAAIRGNLEACTVLVQ 63 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~---------d~--------------~g~TpLh~A~~~g~~~~v~~Ll~ 63 (472)
+.|+||||.|..+.+.+.|++|++.|||++++ |. .|..||.+||-.++.|++++|++
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 34888888888888888888888888887643 11 25678888888888888888888
Q ss_pred cCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhhhhh--c-ccCCCCCCCCccccccCcchhH
Q 012055 64 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRL--L-DKRCDGNSPIGKISKLGLAPAL 125 (472)
Q Consensus 64 ~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~--~-~~~~~~~tpl~~~~k~g~~p~l 125 (472)
+| +|++++|..|+|.||.....-..++.+++...++. . -++..|-|||....|.|..-++
T Consensus 262 ~g--Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf 324 (782)
T KOG3676|consen 262 HG--ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMF 324 (782)
T ss_pred cC--CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHH
Confidence 88 88888888888888888777777777777766655 2 2566677888777777655433
No 86
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-09 Score=114.64 Aligned_cols=95 Identities=26% Similarity=0.268 Sum_probs=87.8
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhh
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 85 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~ 85 (472)
+++|+.||-+||-.++.|++++|++.|||++.+|+.|+|.||..+..-..+.-+.+++.|+++....+|.+|.|||.+|+
T Consensus 237 ~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAa 316 (782)
T KOG3676|consen 237 FYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAA 316 (782)
T ss_pred eeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHH
Confidence 57899999999999999999999999999999999999999999999889999999999943338889999999999999
Q ss_pred hcCchhHHHHHHhhh
Q 012055 86 DKNHRQVAFFLGNAR 100 (472)
Q Consensus 86 ~~~~~~i~~~L~~~~ 100 (472)
..|..++.+.+.+..
T Consensus 317 klGk~emf~~ile~~ 331 (782)
T KOG3676|consen 317 KLGKKEMFQHILERR 331 (782)
T ss_pred HhhhHHHHHHHHHhh
Confidence 999999999887763
No 87
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=2e-09 Score=107.60 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=89.7
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhH
Q 012055 13 AHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 92 (472)
Q Consensus 13 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i 92 (472)
|.-|+..|-.|+|+..+..-.|+...+.+|.|+||-|+-.|+.++|++|++.| +++|..|.+|+||||+|+..++..+
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g--anVNa~DSdGWTPLHCAASCNnv~~ 631 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFG--ANVNAADSDGWTPLHCAASCNNVPM 631 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcC--CcccCccCCCCchhhhhhhcCchHH
Confidence 34588899999999999988899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhhhhhcc--cCCCCCCCCcc
Q 012055 93 AFFLGNARRLLD--KRCDGNSPIGK 115 (472)
Q Consensus 93 ~~~L~~~~~~~~--~~~~~~tpl~~ 115 (472)
++.|.+.|+.+- --.|+.|+..+
T Consensus 632 ckqLVe~GaavfAsTlSDmeTa~eK 656 (752)
T KOG0515|consen 632 CKQLVESGAAVFASTLSDMETAAEK 656 (752)
T ss_pred HHHHHhccceEEeeecccccchhhh
Confidence 999988776543 34567777655
No 88
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=2.7e-09 Score=106.76 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=77.7
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc-ccCCCCCHhhhhh-
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV-TDNTGLTPAQLAS- 85 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~d~~g~TpL~~A~- 85 (472)
.|-||||-|+-.||.++|++|++.|+++|..|++|+||||.|+..++..+++.|++.| +-+.+ .-.++.|+..-.-
T Consensus 582 EGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~G--aavfAsTlSDmeTa~eKCee 659 (752)
T KOG0515|consen 582 EGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESG--AAVFASTLSDMETAAEKCEE 659 (752)
T ss_pred cchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhcc--ceEEeeecccccchhhhcch
Confidence 4789999999999999999999999999999999999999999999999999999999 44433 3456788876543
Q ss_pred -hcCchhHHHHHHhhh
Q 012055 86 -DKNHRQVAFFLGNAR 100 (472)
Q Consensus 86 -~~~~~~i~~~L~~~~ 100 (472)
+.|+.+|.++|-...
T Consensus 660 ~eeGY~~CsqyL~~vq 675 (752)
T KOG0515|consen 660 MEEGYDQCSQYLYGVQ 675 (752)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 357788999986543
No 89
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.83 E-value=2.9e-09 Score=111.05 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=95.3
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhh
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 86 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~ 86 (472)
.-|.+|||+||+.|+.++++.++..+..+|.++..|.||||.|+..|+.+++.+|+++| +|.-.+|..+.|++++|++
T Consensus 80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~--adp~i~nns~~t~ldlA~q 157 (854)
T KOG0507|consen 80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKN--ADPFIRNNSKETVLDLASR 157 (854)
T ss_pred ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcC--CCccccCcccccHHHHHHH
Confidence 44899999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred cCchhHHHHHHhhhhhc---------ccCCCCCCCCcccccc
Q 012055 87 KNHRQVAFFLGNARRLL---------DKRCDGNSPIGKISKL 119 (472)
Q Consensus 87 ~~~~~i~~~L~~~~~~~---------~~~~~~~tpl~~~~k~ 119 (472)
.|..+++.+|....-.. .+...+.+|+|...+.
T Consensus 158 fgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn 199 (854)
T KOG0507|consen 158 FGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN 199 (854)
T ss_pred hhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc
Confidence 99999999887642111 1233345667765554
No 90
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.81 E-value=4e-09 Score=104.34 Aligned_cols=92 Identities=26% Similarity=0.241 Sum_probs=86.3
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCc
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 89 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~ 89 (472)
..++++||+.|++..++-+.-.|.|++.+|.+.+|+||.||..|+.+++++|++..+ .+.+.+|..|+|||+-|...+|
T Consensus 507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k-v~~~~kDRw~rtPlDdA~~F~h 585 (622)
T KOG0506|consen 507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACK-VDPDPKDRWGRTPLDDAKHFKH 585 (622)
T ss_pred hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHc-CCCChhhccCCCcchHhHhcCc
Confidence 457899999999999999999999999999999999999999999999999999864 8999999999999999999999
Q ss_pred hhHHHHHHhhhhh
Q 012055 90 RQVAFFLGNARRL 102 (472)
Q Consensus 90 ~~i~~~L~~~~~~ 102 (472)
.+++++|.+....
T Consensus 586 ~~v~k~L~~~~~~ 598 (622)
T KOG0506|consen 586 KEVVKLLEEAQYP 598 (622)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
No 91
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.78 E-value=6.9e-09 Score=115.23 Aligned_cols=94 Identities=19% Similarity=0.129 Sum_probs=79.5
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC---------CHHHHHHHHHcCCC-Ccc----ccc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG---------NLEACTVLVQAGKK-EDL----MVT 73 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g---------~~~~v~~Ll~~g~~-~~~----~~~ 73 (472)
.|+||||.|+..|+.+++++|++.|+|++.+|..|+||||+|+..+ ...+.+.+++.++. .+. +..
T Consensus 174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~ 253 (743)
T TIGR00870 174 HGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVIL 253 (743)
T ss_pred ccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhc
Confidence 4899999999999999999999999999999999999999999986 23456666666521 222 567
Q ss_pred cCCCCCHhhhhhhcCchhHHHHHHhhhh
Q 012055 74 DNTGLTPAQLASDKNHRQVAFFLGNARR 101 (472)
Q Consensus 74 d~~g~TpL~~A~~~~~~~i~~~L~~~~~ 101 (472)
|.+|.|||++|+..|+.+++++|.+.+.
T Consensus 254 N~~g~TPL~~A~~~g~~~l~~lLL~~~~ 281 (743)
T TIGR00870 254 NHQGLTPLKLAAKEGRIVLFRLKLAIKY 281 (743)
T ss_pred CCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence 9999999999999999999999887543
No 92
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.71 E-value=4.5e-08 Score=97.42 Aligned_cols=87 Identities=29% Similarity=0.326 Sum_probs=80.8
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCch
Q 012055 12 EAHCIAYKGFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 90 (472)
Q Consensus 12 pLh~Aa~~g~~~~v~~Ll~~gad~n~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~ 90 (472)
-||-.++.|+.+..--|+..||++|..+. .|.||||.|++.|+...+++|+-+| +|+...|.+|+||+.+|...||.
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG--AD~~a~d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG--ADPGAQDSSGMTPVDYARQGGHH 213 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc--CCCCCCCCCCCcHHHHHHhcCch
Confidence 48999999999999999999999999875 7999999999999999999999999 99999999999999999999999
Q ss_pred hHHHHHHhhh
Q 012055 91 QVAFFLGNAR 100 (472)
Q Consensus 91 ~i~~~L~~~~ 100 (472)
++++.|.+..
T Consensus 214 ~laeRl~e~~ 223 (669)
T KOG0818|consen 214 ELAERLVEIQ 223 (669)
T ss_pred HHHHHHHHHH
Confidence 9998776643
No 93
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.68 E-value=4.1e-08 Score=99.17 Aligned_cols=103 Identities=28% Similarity=0.299 Sum_probs=93.6
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhH
Q 012055 13 AHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 92 (472)
Q Consensus 13 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i 92 (472)
+.-|+..|..+-++.|+..|++++..+.+|.|+||-+++..+.++|++|+++| ++++..|..|+||+|.|+..++..+
T Consensus 44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e~wtPlhaaascg~~~i 121 (527)
T KOG0505|consen 44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNEGWTPLHAAASCGYLNI 121 (527)
T ss_pred HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccccCCcchhhcccccHHH
Confidence 44578899999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhhhhhc-ccCCCCCCCCcccc
Q 012055 93 AFFLGNARRLL-DKRCDGNSPIGKIS 117 (472)
Q Consensus 93 ~~~L~~~~~~~-~~~~~~~tpl~~~~ 117 (472)
+++|++.++.. ..+.+++.|+....
T Consensus 122 ~~~li~~gA~~~avNsdg~~P~dl~e 147 (527)
T KOG0505|consen 122 VEYLIQHGANLLAVNSDGNMPYDLAE 147 (527)
T ss_pred HHHHHHhhhhhhhccCCCCCcccccc
Confidence 99999887764 47778888876533
No 94
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.67 E-value=1.4e-08 Score=106.51 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=78.6
Q ss_pred HhhhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhh
Q 012055 5 MFLIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQL 83 (472)
Q Consensus 5 ~~~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~ 83 (472)
-+-.|+|+||.|+..+..++++.|+.+|+|++.+|. .|+||||-|...|+.+|+..|+++| +.+..+|++|.+||+.
T Consensus 48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g--~SL~i~Dkeglsplq~ 125 (1267)
T KOG0783|consen 48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG--RSLRIKDKEGLSPLQF 125 (1267)
T ss_pred HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC--CceEEecccCCCHHHH
Confidence 356799999999999999999999999999999997 7999999999999999999999999 8999999999999998
Q ss_pred hhhcCchhH
Q 012055 84 ASDKNHRQV 92 (472)
Q Consensus 84 A~~~~~~~i 92 (472)
.++-....+
T Consensus 126 ~~r~~~~~i 134 (1267)
T KOG0783|consen 126 LSRVLSSTI 134 (1267)
T ss_pred Hhhcccccc
Confidence 877444443
No 95
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.67 E-value=4.6e-08 Score=106.72 Aligned_cols=76 Identities=28% Similarity=0.286 Sum_probs=68.9
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-------CCCCccccccCCCCCH
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA-------GKKEDLMVTDNTGLTP 80 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-------g~~~~~~~~d~~g~Tp 80 (472)
.|+||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++ | ++.+..+..|.+|
T Consensus 114 ~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~g--a~~~~~~~~g~~~ 191 (664)
T PTZ00322 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELG--ANAKPDSFTGKPP 191 (664)
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccC--CCCCccccCCCCc
Confidence 489999999999999999999999999999999999999999999999999999998 6 6777778778877
Q ss_pred hhhhh
Q 012055 81 AQLAS 85 (472)
Q Consensus 81 L~~A~ 85 (472)
+..+.
T Consensus 192 ~~~~~ 196 (664)
T PTZ00322 192 SLEDS 196 (664)
T ss_pred cchhh
Confidence 65443
No 96
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.64 E-value=5e-08 Score=91.24 Aligned_cols=101 Identities=22% Similarity=0.187 Sum_probs=87.7
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc-ccCCCCCHhhhhhhcC
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV-TDNTGLTPAQLASDKN 88 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~d~~g~TpL~~A~~~~ 88 (472)
+.||.-+..+|+.+....|++.--++|..|.+|.++|..|+..|+.+.++.|++.| +|+|. ++..+.|||+.|+-.|
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g--aDvN~~qhg~~YTpLmFAALSG 90 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG--ADVNDKQHGTLYTPLMFAALSG 90 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC--CCcCcccccccccHHHHHHHcC
Confidence 57899999999999999999876679999999999999999999999999999999 78865 4678999999999999
Q ss_pred chhHHHHHHhhhhhcc-cCCCCCCC
Q 012055 89 HRQVAFFLGNARRLLD-KRCDGNSP 112 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~-~~~~~~tp 112 (472)
+.++.++|.++|+... .+.-|+|.
T Consensus 91 n~dvcrllldaGa~~~~vNsvgrTA 115 (396)
T KOG1710|consen 91 NQDVCRLLLDAGARMYLVNSVGRTA 115 (396)
T ss_pred CchHHHHHHhccCccccccchhhhH
Confidence 9999999999887655 23334444
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=98.51 E-value=1.3e-07 Score=59.17 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=23.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGR 37 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~ 37 (472)
|+||||+||+.|+.+++++|+++|+|+|.
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 67888888888888888888888887763
No 98
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.49 E-value=9.4e-08 Score=103.02 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=97.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc-ccCCCCCHhhhhhhcC
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV-TDNTGLTPAQLASDKN 88 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~d~~g~TpL~~A~~~~ 88 (472)
.|+|-.||..||.|.+++|+..|+++..+|+.|.+||..|+-.|+..+|+.|+.+. ++++. .|+.+.|+|.+|+..|
T Consensus 758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~h--a~veaQsdrtkdt~lSlacsgg 835 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAH--ADVEAQSDRTKDTMLSLACSGG 835 (2131)
T ss_pred cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhh--hhhhhhcccccCceEEEecCCC
Confidence 68899999999999999999999999999999999999999999999999999998 77765 6888999999999999
Q ss_pred chhHHHHHHhhhhhcc-cCCCCCCCCccccccCc
Q 012055 89 HRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGL 121 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~-~~~~~~tpl~~~~k~g~ 121 (472)
..+++++|+++++..+ ++...-+|+..+..-|+
T Consensus 836 r~~vvelLl~~gankehrnvsDytPlsla~Sggy 869 (2131)
T KOG4369|consen 836 RTRVVELLLNAGANKEHRNVSDYTPLSLARSGGY 869 (2131)
T ss_pred cchHHHHHHHhhccccccchhhcCchhhhcCcch
Confidence 9999999999887755 66677788876555444
No 99
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.49 E-value=1.9e-07 Score=59.89 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=25.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDK 40 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~ 40 (472)
|+||||+|+..|+.+++++|++.|++++.+|+
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 67888888888888888888888888877763
No 100
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.31 E-value=9.1e-07 Score=56.64 Aligned_cols=33 Identities=42% Similarity=0.762 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccC
Q 012055 41 EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 75 (472)
Q Consensus 41 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~ 75 (472)
+|+||||+|+..|+.+++++|+++| ++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~g--a~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHG--ADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTT--SCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCc--CCCCCCCC
Confidence 4899999999999999999999999 88887764
No 101
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.30 E-value=8.2e-07 Score=89.81 Aligned_cols=90 Identities=29% Similarity=0.378 Sum_probs=72.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAY--RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad--~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
.+.||+|+..|+-++|++++++|.. ++..|..|.|+||-|+-.++..+..+|++.| +.+...|..|+||-.-|.+.
T Consensus 900 ~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag--asl~ktd~kg~tp~eraqqa 977 (1004)
T KOG0782|consen 900 CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG--ASLRKTDSKGKTPQERAQQA 977 (1004)
T ss_pred hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc--hhheecccCCCChHHHHHhc
Confidence 4678888888888888888888764 5666778888888888888888888888888 78888888888888888888
Q ss_pred CchhHHHHHHhhhh
Q 012055 88 NHRQVAFFLGNARR 101 (472)
Q Consensus 88 ~~~~i~~~L~~~~~ 101 (472)
+..+++.+|.+.+.
T Consensus 978 ~d~dlaayle~rq~ 991 (1004)
T KOG0782|consen 978 GDPDLAAYLESRQN 991 (1004)
T ss_pred CCchHHHHHhhhhc
Confidence 88888888876543
No 102
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.29 E-value=2.1e-06 Score=87.28 Aligned_cols=101 Identities=21% Similarity=0.154 Sum_probs=83.8
Q ss_pred HHHHHHcCCHHHHHHHHHCCCC--CCC--CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcC
Q 012055 13 AHCIAYKGFADCIRLLLFLDAY--RGR--QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 88 (472)
Q Consensus 13 Lh~Aa~~g~~~~v~~Ll~~gad--~n~--~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~ 88 (472)
|.-|....++..+-+||.+|.. +|. -+.+|+|+||+|+..|+..+.++|+-+| +|+.++|.+|.|+|.+|.+.|
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg--~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG--VDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC--ccceecccCCchhhhhHhhcc
Confidence 4456667778888889988854 332 3557899999999999999999999999 999999999999999999999
Q ss_pred chhHHHHHHhhhhhcccCCCCCCCCcc
Q 012055 89 HRQVAFFLGNARRLLDKRCDGNSPIGK 115 (472)
Q Consensus 89 ~~~i~~~L~~~~~~~~~~~~~~tpl~~ 115 (472)
..+|+.+|+.+|...+......+|...
T Consensus 706 sqec~d~llq~gcp~e~~~~~~~~~~~ 732 (749)
T KOG0705|consen 706 SQECIDVLLQYGCPDECGLPAETPSRR 732 (749)
T ss_pred cHHHHHHHHHcCCCccccccCCCCccc
Confidence 999999999998776655555555443
No 103
>PF13606 Ank_3: Ankyrin repeat
Probab=98.25 E-value=1.3e-06 Score=54.58 Aligned_cols=29 Identities=45% Similarity=0.701 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 012055 41 EGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 71 (472)
Q Consensus 41 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~ 71 (472)
+|+||||+|+..|+.|++++|+++| +|++
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g--advn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHG--ADVN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcC--CCCC
Confidence 4899999999999999999999999 7775
No 104
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.24 E-value=2.3e-06 Score=86.56 Aligned_cols=85 Identities=27% Similarity=0.361 Sum_probs=73.7
Q ss_pred HHHHHHHcCCHHHHHHHH--HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCc
Q 012055 12 EAHCIAYKGFADCIRLLL--FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 89 (472)
Q Consensus 12 pLh~Aa~~g~~~~v~~Ll--~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~ 89 (472)
|||+++.....+-+..++ +.+..++..|..|.||||+|+.-|+.++++.|+.+| +++..+|++|++|||.|+..|+
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~--Adv~~kN~~gWs~L~EAv~~g~ 100 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG--ADVSIKNNEGWSPLHEAVSTGN 100 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC--CCccccccccccHHHHHHHcCC
Confidence 599999998887666644 445678889999999999999999999999999999 8999999999999999999999
Q ss_pred hhHHHHHHh
Q 012055 90 RQVAFFLGN 98 (472)
Q Consensus 90 ~~i~~~L~~ 98 (472)
.+++..++.
T Consensus 101 ~q~i~~vlr 109 (560)
T KOG0522|consen 101 EQIITEVLR 109 (560)
T ss_pred HHHHHHHHH
Confidence 887765543
No 105
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.07 E-value=3e-06 Score=92.60 Aligned_cols=92 Identities=26% Similarity=0.326 Sum_probs=84.5
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhh
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 85 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~ 85 (472)
-.+|.|+||.|+..|..-..++|+++|+++|..|..|+||||.+...|+...+..|+++| ++.++.|.+|++|+++|.
T Consensus 653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~--a~~~a~~~~~~~~l~~a~ 730 (785)
T KOG0521|consen 653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRG--ADPNAFDPDGKLPLDIAM 730 (785)
T ss_pred hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccc--ccccccCccCcchhhHHh
Confidence 356899999999999999999999999999999999999999999999999999999999 899999999999999998
Q ss_pred hcCchhHHHHHHhh
Q 012055 86 DKNHRQVAFFLGNA 99 (472)
Q Consensus 86 ~~~~~~i~~~L~~~ 99 (472)
+..+.+++-++.-.
T Consensus 731 ~~~~~d~~~l~~l~ 744 (785)
T KOG0521|consen 731 EAANADIVLLLRLA 744 (785)
T ss_pred hhccccHHHHHhhh
Confidence 88777777666544
No 106
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.07 E-value=2.2e-06 Score=92.78 Aligned_cols=99 Identities=19% Similarity=0.091 Sum_probs=89.3
Q ss_pred hHhhh-CchHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHh
Q 012055 4 LMFLI-MTEEAHCIAYKGFADCIRLLLFLDAYRGRQ-DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 81 (472)
Q Consensus 4 ~~~~~-G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL 81 (472)
+|+.- |-+||.+|+-.||..+|+.|++..++++.+ |+.+.|+|.+|+..|+.++++.||..| ++-..++-...|||
T Consensus 784 ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~g--ankehrnvsDytPl 861 (2131)
T KOG4369|consen 784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAG--ANKEHRNVSDYTPL 861 (2131)
T ss_pred cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhh--ccccccchhhcCch
Confidence 44444 889999999999999999999999999884 778999999999999999999999999 78788899999999
Q ss_pred hhhhhcCchhHHHHHHhhhhhcc
Q 012055 82 QLASDKNHRQVAFFLGNARRLLD 104 (472)
Q Consensus 82 ~~A~~~~~~~i~~~L~~~~~~~~ 104 (472)
.+|...|+.+++++|...+..++
T Consensus 862 sla~Sggy~~iI~~llS~GseIn 884 (2131)
T KOG4369|consen 862 SLARSGGYTKIIHALLSSGSEIN 884 (2131)
T ss_pred hhhcCcchHHHHHHHhhcccccc
Confidence 99999999999999999887655
No 107
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.97 E-value=9.1e-06 Score=82.46 Aligned_cols=108 Identities=23% Similarity=0.233 Sum_probs=91.4
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhH
Q 012055 13 AHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 92 (472)
Q Consensus 13 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i 92 (472)
+..|+..++.--++..-.+|.++-.++.+..+.||+|+..|+-|+|++++++|...-++..|..|+|+||-|+-.++..+
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v 949 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV 949 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence 45566666666666667788898889999999999999999999999999999655678889999999999999999999
Q ss_pred HHHHHhhhhhcc-cCCCCCCCCccccccC
Q 012055 93 AFFLGNARRLLD-KRCDGNSPIGKISKLG 120 (472)
Q Consensus 93 ~~~L~~~~~~~~-~~~~~~tpl~~~~k~g 120 (472)
..+|.++++.+. .+..|+||-.+..+.+
T Consensus 950 c~~lvdagasl~ktd~kg~tp~eraqqa~ 978 (1004)
T KOG0782|consen 950 CQLLVDAGASLRKTDSKGKTPQERAQQAG 978 (1004)
T ss_pred HHHHHhcchhheecccCCCChHHHHHhcC
Confidence 999999988766 4667999987766654
No 108
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.95 E-value=1e-05 Score=82.42 Aligned_cols=57 Identities=30% Similarity=0.317 Sum_probs=56.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 65 (472)
|+|+||.||..|++.+.++|+=+|+|+..+|..|+|+|.+|-+.|..||+..|+++|
T Consensus 661 grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~g 717 (749)
T KOG0705|consen 661 GRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYG 717 (749)
T ss_pred CcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999999999999999999
No 109
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.95 E-value=2.5e-06 Score=90.10 Aligned_cols=83 Identities=29% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccC-CCCCHhhhhhhcCchhHHHHHHhhhhhcc-cCCCCCCC
Q 012055 35 RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN-TGLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSP 112 (472)
Q Consensus 35 ~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~-~g~TpL~~A~~~~~~~i~~~L~~~~~~~~-~~~~~~tp 112 (472)
.|.+|..|+|+||.|+..+..+++++|+++| +|+..+|. .|.||||-|+..|+.|++.+|+..+..+. ++.+|.+|
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhG--idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp 122 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHG--IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP 122 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcC--ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence 6778999999999999999999999999999 99999985 69999999999999999999988876655 77788899
Q ss_pred Ccccccc
Q 012055 113 IGKISKL 119 (472)
Q Consensus 113 l~~~~k~ 119 (472)
+..+.+.
T Consensus 123 lq~~~r~ 129 (1267)
T KOG0783|consen 123 LQFLSRV 129 (1267)
T ss_pred HHHHhhc
Confidence 8877764
No 110
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=97.77 E-value=3.8e-05 Score=77.06 Aligned_cols=57 Identities=30% Similarity=0.294 Sum_probs=53.4
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 64 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 64 (472)
-|.||||.||..|+..-+++|+-+|||++.+|.+|.||+.+|-..|+.++.+.|++.
T Consensus 166 kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 166 KGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred cCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999988877653
No 111
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.71 E-value=5.8e-05 Score=67.03 Aligned_cols=67 Identities=30% Similarity=0.296 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhh
Q 012055 32 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 99 (472)
Q Consensus 32 gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~ 99 (472)
+.++|.+|..|+||++.|+..|+.+.+.+|+.+|. +++...|..|.+++++|.+.|..++++.|.+.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-AFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCc-ccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence 45778888888888888888888888888888875 67777888888888888888888888777554
No 112
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.65 E-value=8.2e-05 Score=75.60 Aligned_cols=59 Identities=25% Similarity=0.242 Sum_probs=54.3
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 65 (472)
.-|+||||.|+..|+.+.++.|+..|+|+..+|..|++|||-|+..|+.+++..++.+-
T Consensus 53 ~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 53 PPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL 111 (560)
T ss_pred CCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence 34899999999999999999999999999999999999999999999998887777653
No 113
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.64 E-value=0.00013 Score=71.23 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchh
Q 012055 12 EAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ 91 (472)
Q Consensus 12 pLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~ 91 (472)
-|..||+.|+.+.+++|++.|+++|..|.....||.+|+..|+.+++++|+++|+ -...-..+|.-.+ +++-. ..
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA--iC~rdtf~G~RC~-YgaLn--d~ 113 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA--ICSRDTFDGDRCH-YGALN--DR 113 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC--cccccccCcchhh-hhhhh--HH
Confidence 4789999999999999999999999999999999999999999999999999994 3333334555443 43332 23
Q ss_pred HHHHHHhh
Q 012055 92 VAFFLGNA 99 (472)
Q Consensus 92 i~~~L~~~ 99 (472)
+-++|+..
T Consensus 114 IR~mllsy 121 (516)
T KOG0511|consen 114 IRRMLLSY 121 (516)
T ss_pred HHHHHHHH
Confidence 33455443
No 114
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.45 E-value=0.00033 Score=62.35 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=56.5
Q ss_pred hhhCchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012055 6 FLIMTEEAHCIAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 65 (472)
Q Consensus 6 ~~~G~TpLh~Aa~~g~~~~v~~Ll~~g-ad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 65 (472)
+.+|+||||.||..|..+.+.+|++.| +++...|..|.+++.+|-+.|..+++..|-+.-
T Consensus 9 D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 9 DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence 456999999999999999999999999 899999999999999999999999999998874
No 115
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00051 Score=68.90 Aligned_cols=83 Identities=24% Similarity=0.300 Sum_probs=69.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhhhhhcc--cCCCCCCCCccc
Q 012055 39 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLD--KRCDGNSPIGKI 116 (472)
Q Consensus 39 d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~--~~~~~~tpl~~~ 116 (472)
+.++..++++|+..|....++.+.-.| .|++.+|.+.+|+||.|+..|+.+++++|++.-.... ++.-+++|+...
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA 580 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA 580 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence 345678899999999999999988888 8999999999999999999999999999988755433 566689999877
Q ss_pred cccCcch
Q 012055 117 SKLGLAP 123 (472)
Q Consensus 117 ~k~g~~p 123 (472)
..++..-
T Consensus 581 ~~F~h~~ 587 (622)
T KOG0506|consen 581 KHFKHKE 587 (622)
T ss_pred HhcCcHH
Confidence 6655443
No 116
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.87 E-value=0.00057 Score=74.93 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=48.6
Q ss_pred hCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCCCHhhhhh
Q 012055 8 IMTEEAHCIAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPAQLAS 85 (472)
Q Consensus 8 ~G~TpLh~Aa~~g~~~~v~~Ll~~-gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~~g~TpL~~A~ 85 (472)
-|+|-+|.++..++.-+++.+++. |-.....|.+|.-.+|.++. ++.+.+-+++. .| ..++.+|..|+||||+|+
T Consensus 573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~--~ai~i~D~~G~tpL~wAa 649 (975)
T KOG0520|consen 573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADG--VAIDIRDRNGWTPLHWAA 649 (975)
T ss_pred cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecc--cccccccCCCCcccchHh
Confidence 378888888888888888888875 43333344444444444322 22233222222 23 444555555555555555
Q ss_pred hcCchhHHHHHHhhh
Q 012055 86 DKNHRQVAFFLGNAR 100 (472)
Q Consensus 86 ~~~~~~i~~~L~~~~ 100 (472)
.+|+..++..|...+
T Consensus 650 ~~G~e~l~a~l~~lg 664 (975)
T KOG0520|consen 650 FRGREKLVASLIELG 664 (975)
T ss_pred hcCHHHHHHHHHHhc
Confidence 555555555444333
No 117
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.85 E-value=0.0015 Score=70.25 Aligned_cols=91 Identities=16% Similarity=0.045 Sum_probs=54.9
Q ss_pred hhCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------c-cccccCCCC
Q 012055 7 LIMTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE-------D-LMVTDNTGL 78 (472)
Q Consensus 7 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~-------~-~~~~d~~g~ 78 (472)
.+|+++|+.|..+.+.+++++|++.+.+. .-+|-+|+..|..++++.++.+...+ | -...-..+.
T Consensus 60 ~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~di 132 (822)
T KOG3609|consen 60 PLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDI 132 (822)
T ss_pred hHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCc
Confidence 44555555555555555555555554433 12455555555555666555543101 0 011223578
Q ss_pred CHhhhhhhcCchhHHHHHHhhhhhcc
Q 012055 79 TPAQLASDKNHRQVAFFLGNARRLLD 104 (472)
Q Consensus 79 TpL~~A~~~~~~~i~~~L~~~~~~~~ 104 (472)
||+.+|+..++.||+++|+..+...+
T Consensus 133 tPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 133 TPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred cHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 99999999999999999988776554
No 118
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.79 E-value=0.00084 Score=73.66 Aligned_cols=90 Identities=28% Similarity=0.327 Sum_probs=69.6
Q ss_pred CchHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CccccccCCCCCHhhh
Q 012055 9 MTEEAHCIAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK----EDLMVTDNTGLTPAQL 83 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll-~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~----~~~~~~d~~g~TpL~~ 83 (472)
|...+|.+|.. +.++..+++ -.|..++.+|..|+||||||+.+|+..++..|++.|+. .|....+..|.|+..+
T Consensus 608 ~qgV~hfca~l-g~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~l 686 (975)
T KOG0520|consen 608 GQGVIHFCAAL-GYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADL 686 (975)
T ss_pred CCChhhHhhhc-CCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhh
Confidence 44556774444 445544444 56788999999999999999999999999999988732 1233344579999999
Q ss_pred hhhcCchhHHHHHHhh
Q 012055 84 ASDKNHRQVAFFLGNA 99 (472)
Q Consensus 84 A~~~~~~~i~~~L~~~ 99 (472)
|...|+..+..+|.+.
T Consensus 687 a~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 687 ARANGHKGIAGYLSEK 702 (975)
T ss_pred hhcccccchHHHHhhh
Confidence 9999999999999876
No 119
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.50 E-value=0.0039 Score=61.11 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=57.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhhhhhcccC
Q 012055 43 CTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKR 106 (472)
Q Consensus 43 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~~~~~~~ 106 (472)
.--|..|+..|..+.++.|++.| .++|++|+...+||.+|+-.||.+++++|++.|+.-+++
T Consensus 37 f~elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd 98 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD 98 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence 34588999999999999999999 999999999999999999999999999999999887654
No 120
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.49 E-value=0.0067 Score=61.57 Aligned_cols=71 Identities=25% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHH
Q 012055 22 ADCIRLLLFLDAYRGR------QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF 95 (472)
Q Consensus 22 ~~~v~~Ll~~gad~n~------~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~ 95 (472)
.+.+++|.+++++.|. .|....|+||+|+..|..+++.++|+.| +|+..+|..|.||..++. +.++-..
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg--~Dp~~kd~~Grtpy~ls~---nkdVk~~ 478 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG--CDPSTKDGAGRTPYSLSA---NKDVKSI 478 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc--CCchhcccCCCCcccccc---cHHHHHH
Confidence 5788889888887653 3445779999999999999999999999 999999999999999876 4565554
Q ss_pred HH
Q 012055 96 LG 97 (472)
Q Consensus 96 L~ 97 (472)
+.
T Consensus 479 F~ 480 (591)
T KOG2505|consen 479 FI 480 (591)
T ss_pred HH
Confidence 44
No 121
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.30 E-value=0.0047 Score=68.03 Aligned_cols=95 Identities=25% Similarity=0.274 Sum_probs=75.5
Q ss_pred HHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhhh
Q 012055 23 DCIRLLLFLDAYRGRQD--KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR 100 (472)
Q Consensus 23 ~~v~~Ll~~gad~n~~d--~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~~ 100 (472)
+.+..-...++++|-.+ ..|.|+||.|+..|....++.|++.| ++++.+|..|+||+|.+...|+...+..|.+.+
T Consensus 635 ~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~g--a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~ 712 (785)
T KOG0521|consen 635 PRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNG--ADVNALDSKGRTPLHHATASGHTSIACLLLKRG 712 (785)
T ss_pred hhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcC--CcchhhhccCCCcchhhhhhcccchhhhhcccc
Confidence 33333344455555433 36899999999999999999999999 899999999999999999999999888887777
Q ss_pred hhcc-cCCCCCCCCcccccc
Q 012055 101 RLLD-KRCDGNSPIGKISKL 119 (472)
Q Consensus 101 ~~~~-~~~~~~tpl~~~~k~ 119 (472)
+.+. .+.++++|+..+...
T Consensus 713 a~~~a~~~~~~~~l~~a~~~ 732 (785)
T KOG0521|consen 713 ADPNAFDPDGKLPLDIAMEA 732 (785)
T ss_pred ccccccCccCcchhhHHhhh
Confidence 6655 566778888776544
No 122
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.27 E-value=0.0071 Score=35.59 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=18.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRG 36 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n 36 (472)
|.||+|+|+..++.++++.|++.+.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5667777777777777777776666543
No 123
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=95.30 E-value=0.031 Score=32.60 Aligned_cols=25 Identities=52% Similarity=0.824 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC
Q 012055 41 EGCTPLHWAAIRGNLEACTVLVQAG 65 (472)
Q Consensus 41 ~g~TpLh~A~~~g~~~~v~~Ll~~g 65 (472)
.|.||+|+|+..++.++++.|++.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~ 25 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKG 25 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3678999999999999999999887
No 124
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.51 E-value=0.038 Score=56.26 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=39.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 012055 9 MTEEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA 50 (472)
Q Consensus 9 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~ 50 (472)
-.|+||+|+..|..+++.+||+.|+|+..+|..|.||..++.
T Consensus 430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 430 TSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 369999999999999999999999999999999999999877
No 125
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.34 E-value=0.073 Score=57.78 Aligned_cols=81 Identities=17% Similarity=-0.009 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhc
Q 012055 12 EAHCIAYKGFADCIRLLLFLD----AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 87 (472)
Q Consensus 12 pLh~Aa~~g~~~~v~~Ll~~g----ad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~ 87 (472)
-...|+..|+...|+..++.. .++|.+|.-|+++|+.|+.+.+.|++++|++.. ... ..+|-.|+..
T Consensus 28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~--~~~-------gdALL~aI~~ 98 (822)
T KOG3609|consen 28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTS--SEE-------GDALLLAIAV 98 (822)
T ss_pred HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCc--ccc-------chHHHHHHHH
Confidence 345789999999999888653 368889999999999999999999999999987 332 4578899999
Q ss_pred CchhHHHHHHhhhh
Q 012055 88 NHRQVAFFLGNARR 101 (472)
Q Consensus 88 ~~~~i~~~L~~~~~ 101 (472)
|..+++++++++..
T Consensus 99 ~~v~~VE~ll~~~~ 112 (822)
T KOG3609|consen 99 GSVPLVELLLVHFV 112 (822)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887553
No 126
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=89.90 E-value=0.3 Score=48.12 Aligned_cols=42 Identities=21% Similarity=0.487 Sum_probs=35.9
Q ss_pred CCccCccccchhccccCcCcccCcccccCCh-----------HHHHHHHHHHH
Q 012055 227 RAKHCSTCDRCVEQFDHHCPWVSNCIGKKNK-----------WDFFLFLVLEV 268 (472)
Q Consensus 227 Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~-----------r~F~~fl~~~~ 268 (472)
+.|+|..|+..++.+-|||+.-|+||-+.-| |.+-.|+.+.+
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 5899999999999999999999999999876 45667775544
No 127
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=88.69 E-value=1.7 Score=42.92 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=89.2
Q ss_pred ccccccccccccCCCCccCccccchhccccCcCcccCcccccCChHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCc
Q 012055 213 WSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSF 292 (472)
Q Consensus 213 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (472)
+.+.|..|+.=....-|||..-++||-+.-| +=.-.|++++.+..+..++.....+.........+...
T Consensus 122 RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (309)
T COG5273 122 RSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLA 190 (309)
T ss_pred CCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 4789999999999999999999999997543 45578988887766666666555555555433333333
Q ss_pred ccccccc--c-ccccchhhhhhhhHHHHHHHHHHHHHHHHHHhhchhhHHhHhhhhhh---h--hhcCCCCccCCCCHhH
Q 012055 293 GAWMSYA--S-THHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYN---Y--LRGAGGRFRNPYDHGC 364 (472)
Q Consensus 293 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~r~~---~--~~~~~~~~~npy~~G~ 364 (472)
...+-.. . ....+.+...++......++......+.+.+.++.++-|.....|.+ + ..+ ..+...|++.|.
T Consensus 191 ~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~ 269 (309)
T COG5273 191 ICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFD-SSEGALPLDLGI 269 (309)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccC-CCccccccccCc
Confidence 1111100 0 00011111122222334455566778889999999999866544433 1 111 112346667777
Q ss_pred HHHHHHhccC
Q 012055 365 KRNCSDFLIN 374 (472)
Q Consensus 365 ~~N~~~f~~~ 374 (472)
-+|+..+++.
T Consensus 270 ~~~~~~i~~~ 279 (309)
T COG5273 270 GQNLSTIKGS 279 (309)
T ss_pred cccceeecCC
Confidence 7777666653
No 128
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=88.11 E-value=1.6 Score=39.06 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=21.9
Q ss_pred cCCCCccCccccchhccccCcCcccCcccccCChHHH
Q 012055 224 RPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDF 260 (472)
Q Consensus 224 kP~Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~F 260 (472)
...+.+.|..|+.=.+.+-|||...+.||-+..|.-.
T Consensus 44 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~ 80 (174)
T PF01529_consen 44 ENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCP 80 (174)
T ss_pred cCCCCEECcccCCcCCCcceeccccccccccccccch
Confidence 4445556666666666666666666666666655443
No 129
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=86.09 E-value=5 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=28.5
Q ss_pred CCccCccccchhccccCcCcccCcccccCChHH
Q 012055 227 RAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWD 259 (472)
Q Consensus 227 Rs~HC~~C~~CV~r~DHHC~w~~nCIG~~N~r~ 259 (472)
+.+.|..|+.-.+.+-|||.-.+.||.+.-|.-
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHC 140 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHC 140 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccCC
Confidence 678899999999999999999999998887764
No 130
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=80.25 E-value=6.3 Score=36.69 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=64.2
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHH--cCCHHHHHHHHHcCCCCcccc---ccCCCCCH
Q 012055 10 TEEAHCIAYKGFADCIRLLLFLDAYRGRQDK----EGCTPLHWAAI--RGNLEACTVLVQAGKKEDLMV---TDNTGLTP 80 (472)
Q Consensus 10 ~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~----~g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~---~d~~g~Tp 80 (472)
.++|-+|..++..+++-+|+.+ -....+|- .+.--+-++.. ..+..+++..+++|- +++|. +-+.|.|-
T Consensus 180 ~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Gl-v~vN~~F~~~NSGdtM 257 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGL-VDVNKKFQKVNSGDTM 257 (284)
T ss_pred HHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccc-cccchhhhccCCcchH
Confidence 3566777777778888888864 12222221 12223444433 346778899999984 56553 34689999
Q ss_pred hhhhhhcCchhHHHHHHhhhhhccc
Q 012055 81 AQLASDKNHRQVAFFLGNARRLLDK 105 (472)
Q Consensus 81 L~~A~~~~~~~i~~~L~~~~~~~~~ 105 (472)
|+-|...++.+++.+|++.|+...+
T Consensus 258 LDNA~Ky~~~emi~~Llk~GA~~~k 282 (284)
T PF06128_consen 258 LDNAMKYKNSEMIAFLLKYGAISGK 282 (284)
T ss_pred HHhHHhcCcHHHHHHHHHcCccccC
Confidence 9999999999999999999886544
No 131
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=77.43 E-value=1.2 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.668 Sum_probs=17.9
Q ss_pred cccccccccCCCCccCccccc
Q 012055 216 LCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 216 ~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
+|+.|....++.++.|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 588899888999999988874
No 132
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=73.98 E-value=6.3 Score=36.68 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=39.4
Q ss_pred CHHHHHHHHHCC-CCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012055 21 FADCIRLLLFLD-AYRGRQ---DKEGCTPLHWAAIRGNLEACTVLVQAG 65 (472)
Q Consensus 21 ~~~~v~~Ll~~g-ad~n~~---d~~g~TpLh~A~~~g~~~~v~~Ll~~g 65 (472)
+..++++++.+| +++|.+ -++|.|-|.-|.+.++.+.+..|+++|
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G 277 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG 277 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence 467888999888 677763 468999999999999999999999999
No 133
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=69.78 E-value=2.5 Score=25.10 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=18.9
Q ss_pred ccccccccccCCCCccCccccc
Q 012055 215 QLCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 215 ~~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
++|+.|....++.++.|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 6799999988899999998874
No 134
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=69.43 E-value=2.5 Score=29.01 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=21.2
Q ss_pred cccccccccccCCCCccCccccc
Q 012055 214 SQLCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 214 ~~~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
...|..|...-|+|+.-|..|+.
T Consensus 14 k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 14 KKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred ccchhcccCCCCccccccccCCC
Confidence 57899999999999999998875
No 135
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=69.27 E-value=38 Score=33.72 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCCCCCCCCChhhhhh-hccCcchhcCcccccccccccccCCCCccC
Q 012055 153 FGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKI-EMNNPALLAGNWSQLCATCKIVRPLRAKHC 231 (472)
Q Consensus 153 ~~~~~~~~~~l~~~~l~~~~~~~~~dPG~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC 231 (472)
+.++.|...++.-.....+.---+.-||+-|.+..+..-... -.+. ..+ ...+.-|.+|+.=.-.--|||
T Consensus 52 i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~~lqf---Ck~CqgYK------apRSHHCrkCnrCvmkMDHHC 122 (414)
T KOG1314|consen 52 ITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDEMFLQF---CKKCQGYK------APRSHHCRKCNRCVMKMDHHC 122 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHH---HhhccCcC------CCccccchHHHHHHHhhccCC
Confidence 344556655555445556666677899999988776432110 0000 011 113688999998777788999
Q ss_pred ccccchhccccCcCcccCcccccCChHHHHHHHHH
Q 012055 232 STCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVL 266 (472)
Q Consensus 232 ~~C~~CV~r~DHHC~w~~nCIG~~N~r~F~~fl~~ 266 (472)
..-+.||--..|- -.-+|++|...
T Consensus 123 PWinnCVG~aNh~-----------~F~~FLlf~iv 146 (414)
T KOG1314|consen 123 PWINNCVGWANHA-----------YFLRFLLFSIV 146 (414)
T ss_pred cchhhcccccccH-----------HHHHHHHHHHH
Confidence 9999999854443 23778888876
No 136
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=65.53 E-value=2.2 Score=34.33 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=1.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 012055 149 LTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGY 181 (472)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~dPG~ 181 (472)
++..+.+++|+.+++++..+..-|.....|||+
T Consensus 51 ypviFnIiLW~~v~l~~all~i~~~m~~mDPGr 83 (98)
T PF07850_consen 51 YPVIFNIILWFSVVLALALLAICYAMWNMDPGR 83 (98)
T ss_dssp -------------------------------TT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 445567778887777766665555556799995
No 137
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=58.72 E-value=16 Score=34.95 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=30.2
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Q 012055 145 NLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGY 181 (472)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~dPG~ 181 (472)
|-..++..+.++.|+.+++.+..++..|-...+|||+
T Consensus 275 y~sdYpviFni~Lw~mvil~lali~i~y~ia~mDPg~ 311 (326)
T KOG4737|consen 275 YSSDYPVIFNIFLWLMVILVLALIYIVYGIASMDPGK 311 (326)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc
Confidence 3345667889999999999888888888788899996
No 138
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=57.72 E-value=22 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=24.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012055 11 EEAHCIAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 64 (472)
Q Consensus 11 TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 64 (472)
.-+..|...|+.|+++.+++.+ .++ ...+..|+..-+-+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 3445566666666666555433 111 1345556555556666665554
No 139
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=57.37 E-value=23 Score=32.83 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhccCCCccccCCCCCCCC
Q 012055 164 ATGGLVLFYRCSRKDPGYIRMNVHDPQNM 192 (472)
Q Consensus 164 ~~~~l~~~~~~~~~dPG~i~~~~~~~~~~ 192 (472)
.+..+-+|+.|..+|||........++.+
T Consensus 204 vf~LvgLyr~C~k~dPg~p~~g~~qpqsd 232 (259)
T PF07010_consen 204 VFTLVGLYRMCWKTDPGTPENGPDQPQSD 232 (259)
T ss_pred HHHHHHHHHHhhcCCCCCcccCCCCCCcc
Confidence 33444567788899999655544434433
No 140
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=57.26 E-value=15 Score=28.00 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=38.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCCCHhhhhhhcCchhHHHHHHhh
Q 012055 44 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 99 (472)
Q Consensus 44 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~TpL~~A~~~~~~~i~~~L~~~ 99 (472)
.-+..|+..|+.|+++.+++.+ .+ + ...+..|....+.+++++|.+.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~---~~---~---~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN---KP---D---NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh---cc---H---HHHHHHHHHHhhHHHHHHHHHh
Confidence 4689999999999999998765 11 1 3479999999999999998765
No 141
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=56.33 E-value=6.1 Score=23.55 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=18.3
Q ss_pred ccccccccccCCCCccCccccc
Q 012055 215 QLCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 215 ~~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
+.|+.|....|.-++-|..|+.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 3589999999999999988874
No 142
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=48.86 E-value=4.1 Score=28.00 Aligned_cols=23 Identities=30% Similarity=0.816 Sum_probs=20.6
Q ss_pred cccccccccccCCCCccCccccc
Q 012055 214 SQLCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 214 ~~~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
.+.|..|...-|+|+.-|..|+.
T Consensus 14 kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 14 KKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred HHHHHHhcCCCCcchhHHhhccC
Confidence 57899999999999999998764
No 143
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=46.01 E-value=9.7 Score=41.52 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=18.5
Q ss_pred ccccccccccC-------CCCccCccccc
Q 012055 215 QLCATCKIVRP-------LRAKHCSTCDR 236 (472)
Q Consensus 215 ~~C~~C~~~kP-------~Rs~HC~~C~~ 236 (472)
..|..|+..-. .|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 57999998764 39999999987
No 144
>PF12773 DZR: Double zinc ribbon
Probab=45.35 E-value=15 Score=25.28 Aligned_cols=34 Identities=24% Similarity=0.573 Sum_probs=23.4
Q ss_pred cccccccccccC---CCCccCccccchhccccCcCcc
Q 012055 214 SQLCATCKIVRP---LRAKHCSTCDRCVEQFDHHCPW 247 (472)
Q Consensus 214 ~~~C~~C~~~kP---~Rs~HC~~C~~CV~r~DHHC~w 247 (472)
.+||..|....+ .....|..|+.=+...+.+|+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 467777776655 3356677777777777777764
No 145
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=42.57 E-value=11 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.858 Sum_probs=15.7
Q ss_pred cccccccccCCCCccCccccc
Q 012055 216 LCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 216 ~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
.|..|...-++++.+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 588899888999999888864
No 146
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=41.85 E-value=1.7e+02 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=24.6
Q ss_pred cccccccccccCCCCccCccccchhccccCcC
Q 012055 214 SQLCATCKIVRPLRAKHCSTCDRCVEQFDHHC 245 (472)
Q Consensus 214 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC 245 (472)
..-|..|....|....+|..|+.-..+..++.
T Consensus 221 l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~s 252 (419)
T PRK15103 221 LRSCSCCTAILPADQPVCPRCHTKGYVRRRNS 252 (419)
T ss_pred CCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCC
Confidence 35699999988877778999888776665553
No 147
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=37.59 E-value=2.1e+02 Score=29.56 Aligned_cols=31 Identities=16% Similarity=0.503 Sum_probs=22.2
Q ss_pred cccccccc-ccCCCCccCccccchhccccCcC
Q 012055 215 QLCATCKI-VRPLRAKHCSTCDRCVEQFDHHC 245 (472)
Q Consensus 215 ~~C~~C~~-~kP~Rs~HC~~C~~CV~r~DHHC 245 (472)
.-|+.|.. ..|....+|..|+.-..|..++.
T Consensus 216 ~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~s 247 (403)
T TIGR00155 216 RSCSACHTTILPAQEPVCPRCSTPLYVRRRNS 247 (403)
T ss_pred CcCCCCCCccCCCCCcCCcCCCCcccCCCCCC
Confidence 45999997 45555667888888776665553
No 148
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=37.33 E-value=17 Score=25.49 Aligned_cols=24 Identities=29% Similarity=0.760 Sum_probs=16.5
Q ss_pred cccccccccccCCCCccCcc--ccch
Q 012055 214 SQLCATCKIVRPLRAKHCST--CDRC 237 (472)
Q Consensus 214 ~~~C~~C~~~kP~Rs~HC~~--C~~C 237 (472)
...|..|-..-|+|+..|.. |+.+
T Consensus 17 k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 17 KMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp -EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred ceecccccCcCCCCccceecccCCCC
Confidence 57899999999999999998 8765
No 149
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.29 E-value=2.4e+02 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.6
Q ss_pred hhchhhHHhHhhhhhhhhhc
Q 012055 332 SRNITTNEMANALRYNYLRG 351 (472)
Q Consensus 332 ~~n~Tt~E~~~~~r~~~~~~ 351 (472)
.++.+|-|.++..++.|..+
T Consensus 79 ~~~r~tae~lk~e~~~~~~~ 98 (112)
T PF14015_consen 79 IRYRATAESLKREKWLYLAG 98 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 57899999999998888654
No 150
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=31.09 E-value=15 Score=37.54 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=21.8
Q ss_pred ccccccccccc--cCCCCccCccccchhcc
Q 012055 213 WSQLCATCKIV--RPLRAKHCSTCDRCVEQ 240 (472)
Q Consensus 213 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV~r 240 (472)
..++|+.|... ---|-|||+.||+.+-+
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~ 208 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVMCR 208 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHHHH
Confidence 36899999754 45688999999996653
No 151
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=26.68 E-value=38 Score=22.27 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=12.7
Q ss_pred CCCCcccccCCCCCCCC
Q 012055 430 SHHGHLHSSHCNHSNHG 446 (472)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (472)
.=+||.+|+ |.|+.+.
T Consensus 13 CirGHR~s~-C~H~dRp 28 (39)
T smart00412 13 CIRGHRSST-CNHNDRP 28 (39)
T ss_pred HHCcCccCC-cccCCcc
Confidence 446899999 9999776
No 152
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=24.41 E-value=31 Score=25.45 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=12.6
Q ss_pred cccccccccc--cCCCCccCccccchhc
Q 012055 214 SQLCATCKIV--RPLRAKHCSTCDRCVE 239 (472)
Q Consensus 214 ~~~C~~C~~~--kP~Rs~HC~~C~~CV~ 239 (472)
...|..|... --.|-|||+.|++.|=
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 4668888643 3478889999998553
No 153
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=22.14 E-value=45 Score=24.37 Aligned_cols=22 Identities=27% Similarity=0.806 Sum_probs=19.5
Q ss_pred ccccccccccCCCCccCccccc
Q 012055 215 QLCATCKIVRPLRAKHCSTCDR 236 (472)
Q Consensus 215 ~~C~~C~~~kP~Rs~HC~~C~~ 236 (472)
+-|..|+...|+-+.-|..|+-
T Consensus 5 kAC~~Ck~l~~~d~e~CP~Cgs 26 (64)
T COG2093 5 KACKNCKRLTPEDTEICPVCGS 26 (64)
T ss_pred HHHhhccccCCCCCccCCCCCC
Confidence 5699999999999999999886
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=22.02 E-value=51 Score=23.54 Aligned_cols=36 Identities=33% Similarity=0.842 Sum_probs=27.5
Q ss_pred cccccccccCCCC-------ccCccccchhccc-cCcCcccCccccc
Q 012055 216 LCATCKIVRPLRA-------KHCSTCDRCVEQF-DHHCPWVSNCIGK 254 (472)
Q Consensus 216 ~C~~C~~~kP~Rs-------~HC~~C~~CV~r~-DHHC~w~~nCIG~ 254 (472)
-|..|..--|+-+ .-|..|..|+... ++.|| ||=|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 4777777777665 5688999999988 99999 66553
No 155
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=21.66 E-value=44 Score=31.38 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=9.5
Q ss_pred hccccCcCcccC
Q 012055 238 VEQFDHHCPWVS 249 (472)
Q Consensus 238 V~r~DHHC~w~~ 249 (472)
..+.+|||||..
T Consensus 38 rsye~H~Cp~~~ 49 (250)
T KOG3183|consen 38 RSYESHHCPKGL 49 (250)
T ss_pred chHhhcCCCccc
Confidence 467899999864
No 156
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=21.14 E-value=2.4e+02 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhchhhHHh
Q 012055 311 IADFSLFFGVAVLTAVQASQISRNITTNEM 340 (472)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~ 340 (472)
++|.++.+.+..+++.-++.|.+|.-..|.
T Consensus 39 Vic~~lVfVii~lFi~ll~~i~~~~e~~~~ 68 (84)
T PF06143_consen 39 VICCFLVFVIIVLFILLLYNINKNAEQDRA 68 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444445454555666666777776644443
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the