BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012056
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 225/375 (60%), Gaps = 14/375 (3%)
Query: 79 AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY- 137
A R +++F E IVTCGG+CPGLN VIR I ++Y V +++G GY G
Sbjct: 85 AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 138 --SKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195
S+ I L V +IH GGTILG+SRG D ++VD+++ G+N ++ +GGDGTQ+G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIEN 255
A VI +E ++RG+ ++V G+PKTIDND+ ++FGF TAVE+A +AI AA+ EA S
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 256 GIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVI 315
G+GVVKLMGR GFIA A + S + CL+PE+P E + +E+R + VI
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI---SEQEVMSLLERRFCHSRSCVI 321
Query: 316 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI---NLKYI 372
++AEG GQD S DASGNK L D+G+ ++ K+K F + +K +KYI
Sbjct: 322 IVAEGFGQDWGRGS----GGYDASGNKKLIDIGVILTEKVK-AFLKANKSRYPDSTVKYI 376
Query: 373 DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQ 432
DP+YMIRA P +A+D ++C LA AVH A+AG TG + + + +P +
Sbjct: 377 DPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRV 436
Query: 433 VVITDRMWARVLSST 447
+ + ++W +V T
Sbjct: 437 LDLRGQLWRQVREIT 451
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 122/237 (51%), Gaps = 27/237 (11%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAG 322
IA+Y+ L + LIPE+ + + + I KR E G H +I++AEG G
Sbjct: 176 IALYSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 27/237 (11%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAG 322
IA+++ L + LIPE+ + + + I KR E G H +I++AEG G
Sbjct: 176 IALWSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 27/237 (11%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAG 322
IA+++ L + LIPE+ + + + I KR E G H +I++AEG G
Sbjct: 176 IALWSGLAG-GAETILIPEADYDMN------DVIARLKRGHERGKKHSIIIVAEGVG 225
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 118/238 (49%), Gaps = 27/238 (11%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N +R +V +YH ++ GI GY G S L V DI
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYHDV---EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT L T+R K + +++ GI + +IGGDG+ GA + E
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE--KRLKENG--HMVIVIAEGAGQ 323
IA++A L + LIPE+ + ++E I KR E G H +I++AEG G
Sbjct: 176 IALWAGLAG-GAESILIPEADY------DMHEIIARLKRGHERGKKHSIIIVAEGVGS 226
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V + +++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 156 GGTILGTS-----RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++ R + + +++++ RGI+ + +IGGDG+ GA + E +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDI D + GF TA+ AI+ + S I VV++MGRYCG +
Sbjct: 119 PCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGRYCGDL 177
Query: 271 AMYATLGSRDVDCCLIPESPFYLE 294
+ A + + ++PE F E
Sbjct: 178 TLAAAIAG-GCEFVVVPEVEFSRE 200
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 143/338 (42%), Gaps = 69/338 (20%)
Query: 96 IVTCGGLCPGLNTVIRE-----IVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVN 150
I+T GG PG+N +R I GL ++ GI G+ G + + L + V
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIANGL-------EVFGIRYGFAGLVAGDIFPLESEDVA 58
Query: 151 DIHKRGGTILGTSR---GGHDTSKI--VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
+ GT L ++R + ++ ++ ++ GI+ V +IGGDG+ GA ++ +
Sbjct: 59 HLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTR 114
Query: 206 RGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGR 265
G G+P TIDNDIP D + G+DTA A AI+ A S + + +V +MGR
Sbjct: 115 HGFNSI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS-HHRVFIVNVMGR 171
Query: 266 YCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLK---ENG--HMVIVIAEG 320
CG IAM + D +IPE P+ + E I RLK E+G H ++V+AEG
Sbjct: 172 NCGDIAMRVGVAC-GADAIVIPERPYDV-------EEIANRLKQAQESGKDHGLVVVAEG 223
Query: 321 A-GQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIR 379
D L+ D N L +M R
Sbjct: 224 VMTADQFMAELKKYGDFDVRANVL-------------------------------GHMQR 252
Query: 380 AIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR 417
SD V + L AVH + G G VG NG+
Sbjct: 253 GGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGK 290
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 8/207 (3%)
Query: 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV 148
S ++ I+ GG PG + VI + + SK+ G GG G + I LT +
Sbjct: 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 129
Query: 149 VNDIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
+N GG I+ + R +T +K + ++ +N + IIGGD + AA++ E
Sbjct: 130 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 189
Query: 204 RQRGLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVK 261
++ G + V G+PKTID D+ I+ SFGFD+A + I +A S + VK
Sbjct: 190 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 249
Query: 262 LMGRYCGFIAMYATLGSRDVDCCLIPE 288
LMGR +A+ L + + C++ E
Sbjct: 250 LMGRSASHVALECALKTHP-NICIVSE 275
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 126/267 (47%), Gaps = 33/267 (12%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS--KNTINLTPKVVNDIH 153
++T GG G+N +R +V ++ +++ + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVV--RVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 154 KRGGTILGTSRGG-----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR---- 204
+ GGT++G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 205 --QRGLKVA-----------VAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251
Q+ K+ + G+ +IDND D + G D+A+ ++A A+
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 252 SIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFI-EKRLKEN 310
S + V+++MGR+CG++A+ +L S D IPE P E L + E R + +
Sbjct: 198 SHQRTF-VLEVMGRHCGYLALVTSL-SCGADWVFIPECPPDDNWEDHLCRRLSETRTRGS 255
Query: 311 GHMVIVIAEGA----GQDLLAESLQSM 333
+I++AEGA G+ + +E ++ +
Sbjct: 256 RLNIIIVAEGAIDRNGKPITSEGVKDL 282
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 13/201 (6%)
Query: 75 HFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGY 133
H R P+ Y V+ ++ G G+N +R V GL +++L + G+
Sbjct: 390 HIRPPAPKSGSYTVA------VMNVGAPAAGMNAAVRSTVRIGLIQG---NRVLVVHDGF 440
Query: 134 RGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS--KIVDSIQDRGINQVYIIGGDG 191
G V +GG+ LG+ R S +I +I I + IIGG
Sbjct: 441 EGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Query: 192 TQKGAAVIYEEIRQ-RGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
G + E +Q L + IP T+ N++P D S G DTA+ + A
Sbjct: 501 AYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSA 560
Query: 251 ESIENGIGVVKLMGRYCGFIA 271
+ + +++ MG YCG++A
Sbjct: 561 AGTKRRVFIIETMGGYCGYLA 581
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 115/253 (45%), Gaps = 31/253 (12%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK- 154
++T GG PG+N +R +V +Y K+ I GY G + +D+
Sbjct: 186 VMTSGGDSPGMNPFVRAVVRA--GIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGW 243
Query: 155 --RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGA----------- 196
GGT +GT+R K ++ D GI+ + + GGDG+ GA
Sbjct: 244 LVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLI 303
Query: 197 --AVIYEEIRQRGLK----VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+ E+I Q+ + + G +IDND+ D + G ++++ RAI+ A
Sbjct: 304 EELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATA 363
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF-YLEGEGGLYEFIEK-RLK 308
S +V++MGR+CG++ + A L + D LIPE P E + + + + K R +
Sbjct: 364 NSHSRAF-IVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVGKHRAR 421
Query: 309 ENGHMVIVIAEGA 321
++++AEGA
Sbjct: 422 GKRKTIVIVAEGA 434
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 156 GGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR----GL 208
GG+ +GT+R D I + G + + ++GG + +++ R R L
Sbjct: 635 GGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGG---FEAFISLHQLERARINYPSL 691
Query: 209 KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
++ + IP TI N++P + S G DT + + A + N + VV++ G G
Sbjct: 692 RIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSG 751
Query: 269 FIAMYATLGSRDVDCCLIPE---SPFYLEGE-GGLYE-FIEKRLKENGHMVIVIAEGAGQ 323
+IA +A L +PE S LE + L E F + K +I+ +E A +
Sbjct: 752 YIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLILKSENASK 810
Query: 324 DLLAESLQSMNQQDASG 340
L E + ++ +ASG
Sbjct: 811 VLTTEVISTIIDDEASG 827
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 119/258 (46%), Gaps = 30/258 (11%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG PG+N +R +V H +G + + GY G K + + V
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIH-FGCD-VFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 153 HKRGGTILGTSRG-----GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV-------IY 200
GGT++GT+R + ++ +GI+ + + GGDG+ GA + +
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 201 EEIRQRGL----------KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+E+ G +++ G+ +IDND+ D + G +A+E ++ A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF-YLEGEGGLYEFIEK-RLK 308
+S VV++MGR+CG++A+ A + + D IPE + + + L E ++ R K
Sbjct: 187 KSHSRAF-VVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQRHRSK 244
Query: 309 ENGHMVIVIAEGAGQDLL 326
+ I++AEGA D L
Sbjct: 245 GRRNNTIIVAEGALDDQL 262
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 6/193 (3%)
Query: 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTP 146
VSD ++ IV G P LY + K I G+ G + L+
Sbjct: 390 VSDRLNIGIVHVG--APSAALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTGEVKELSW 447
Query: 147 KVVNDIHKRGGTILGTSR--GGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEI 203
V + H GG+ +GT+R D I Q ++ + I+GG +G + +
Sbjct: 448 IDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRT 507
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263
+ + + IP T+ N++P + S G DT + + A + + V ++
Sbjct: 508 QHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQ 567
Query: 264 GRYCGFIAMYATL 276
G + G+IA + L
Sbjct: 568 GGHSGYIASFTGL 580
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 114/259 (44%), Gaps = 41/259 (15%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIH- 153
++T GG PG+N+ +R IV ++ + + GY G + P+ + + H
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSA--IFKGCRAFVVMEGYEGL-----VRGGPEYIKEFHW 59
Query: 154 -------KRGGTILGTSRGGHDTSKI-----VDSIQDRGINQVYIIGGDGTQKGAAV--- 198
GGT +GT+R + + + G++ + + GGDG+ GA +
Sbjct: 60 EDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRS 119
Query: 199 --------------IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244
I E +R + + G +IDND+ D + G +A++ +AI+
Sbjct: 120 EWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID 179
Query: 245 AAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP-FYLEGEGGLYEFI 303
A S VV++MGR CG++A+ A + + D IPE P E + + + +
Sbjct: 180 YVEATANSHSRAF-VVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIV 237
Query: 304 EK-RLKENGHMVIVIAEGA 321
K R + ++V+AEGA
Sbjct: 238 SKHRSRGKRTTIVVVAEGA 256
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 22/237 (9%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPKVVNDIH 153
IV G G+N+ + + Y M + I G+ G ++ +L K +
Sbjct: 397 AIVNVGAPAGGINSAVYSMAT--YCMSQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 154 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---- 206
RGG+ +GT+R D I Q + + I+GG + +++ R R
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGG---FEAFESLHQLERARESYP 511
Query: 207 GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRY 266
++ + IP T+ N++P + S G DTA+ + A S VV G
Sbjct: 512 AFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGN 571
Query: 267 CGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQ 323
G++A YA+L + +PE LE E++ + ++ AEG G+
Sbjct: 572 SGYLATYASL-AVGAQVSYVPEEGISLEQLSEDIEYLAQSFEK--------AEGRGR 619
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 38/262 (14%)
Query: 95 CIVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTI--NLTPKVVND 151
I+T GG PG+N +R + G++ YG K+ GY G + L + V
Sbjct: 214 AIITSGGDAPGMNAAVRAVTRAGIF--YGC-KVYACYEGYTGLVKGGDMLKELQWQDVRG 270
Query: 152 IHKRGGTILGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKGAAV-------- 198
+ GGTI+GT+R + ++ GI+ + + GGDG+ GA +
Sbjct: 271 LLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPEL 330
Query: 199 ---------IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249
I +E + + + G+ +IDND+ D + G +++E ++
Sbjct: 331 IKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDAT 390
Query: 250 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEK---R 306
A S VV++MGR+CG++ + + + + D IPE P E + ++K R
Sbjct: 391 AASHSRAF-VVEVMGRHCGWLGLMSGIAT-GADYIFIPERP---PSESNWKDDLKKVCLR 445
Query: 307 LKENGH--MVIVIAEGAGQDLL 326
+E G +++AEGA D L
Sbjct: 446 HREKGRRKTTVIVAEGAIDDQL 467
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 13/229 (5%)
Query: 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPK 147
S ++ I+ G LN R V L + ++ I G+ G + L
Sbjct: 596 SSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNWI 653
Query: 148 VVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
V D H GG+ +GT+R D + Q + + IIGG + +YE
Sbjct: 654 DVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDAA 710
Query: 206 RG----LKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVK 261
R + + +P T+ N++P + S G DT + +A A + VV+
Sbjct: 711 RAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVE 770
Query: 262 LMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310
+ G Y G++A YA L + + PE+P L+ E + + +E+
Sbjct: 771 VQGGYSGYLASYAGLITGAL-AVYTPENPINLQTVQEDIELLTRTYEED 818
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 137/326 (42%), Gaps = 35/326 (10%)
Query: 105 GLNTVIREIVCGLY-----HMYGVSKIL----GIDGGYRGFYSKNTINLTPKVVNDIHKR 155
G+ VI CG+ H + K+ GI G + ++ + IH
Sbjct: 13 GVTAVINASACGVIQTARKHPDQIGKVYAGRNGIIGALKEELIDTSLESDDAIQALIHTP 72
Query: 156 GGT-------ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208
GG + S + ++++ + I + GG +Q A + + + G
Sbjct: 73 GGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLADRMGY 132
Query: 209 KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESI---ENGIGVVKLMGR 265
+ G+PKT+DND+P D GF + + + A ++ +S+ + ++++MGR
Sbjct: 133 PITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGR 192
Query: 266 YCGFIAMYATLGSRDV----DCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGA 321
+ G+IA L + L PE PF E E +++ +++ G+ V+V +EGA
Sbjct: 193 HAGWIAAAGGLAGQSEGEPPHVILFPEIPFNRE---KFLERVDQCVRDYGYCVVVASEGA 249
Query: 322 GQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAI 381
Q + +DA G+ L V +++ +K + A+ Y+ RA
Sbjct: 250 -QYEDGRFVADAGAKDAFGHTQLGGVAPALANMVKQALGHKYHWAV------ADYLQRAA 302
Query: 382 P--SNASDNVYCTLLAQSAVHGAVAG 405
++A+D + ++AV A+AG
Sbjct: 303 RHIASATDVEQAYAVGKAAVEMALAG 328
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 27/238 (11%)
Query: 215 IPKTIDNDIPVIDKSFGFDT-----AVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+PKT+DND+P+ D GF + AV + + + A + A S + + V+++MGR+ G+
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK--VFVLEVMGRHAGW 196
Query: 270 IAMYATLGS---RDVDCC-LIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDL 325
IA L S R++ L PE F + ++ +K+ G+ +V++EG D
Sbjct: 197 IAAAGGLASSPEREIPVVILFPEISF---DKQKFLAKVDSCVKKFGYCSVVVSEGVKGD- 252
Query: 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNA 385
+ L +DA G+ L V ++ +K+ + + Y+ RA A
Sbjct: 253 DGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGLKYHWGV------ADYLQRAARHIA 306
Query: 386 S--DNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN-RINERQ-NQVVITDRM 439
S D + Q+AV AV G+ +V P R + P+ ++ Q +QV ++M
Sbjct: 307 SKTDVEQAYAMGQAAVEFAVQGHN--SVMPTIERISARPYQWKVGMAQLSQVANVEKM 362
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 231 GFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRY-CGFIAMYATLGSRDVDCCLIPES 289
G+ EE AIN + +S+E I K+ G G+I +Y LG +V+ S
Sbjct: 1 GYSDDEEEESNAINVVSEKTKSLEEKIAYYKMKGHTERGYITIYTNLGDFEVELYWY-HS 59
Query: 290 P-----FYLEGEGGLYE 301
P FY E G Y+
Sbjct: 60 PKTCLNFYTLCEMGFYD 76
>pdb|1NEC|A Chain A, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|B Chain B, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|C Chain C, Nitroreductase From Enterobacter Cloacae
pdb|1NEC|D Chain D, Nitroreductase From Enterobacter Cloacae
Length = 216
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 297 GGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIK 356
G Y F E+++ + H+V+ A+ A D E + ++Q++A G + +HK +
Sbjct: 64 AGTYVFNERKMLDASHVVVFCAKTAMDDAWLERV--VDQEEADGRFNTPEAKA-ANHKGR 120
Query: 357 DHFARLHKMAINLKYIDPTYMIRAIPSN 384
+FA +H+ ++LK D +M + + N
Sbjct: 121 TYFADMHR--VDLKD-DDQWMAKQVYLN 145
>pdb|1KQB|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQB|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Benzoate
pdb|1KQC|A Chain A, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|B Chain B, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|C Chain C, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQC|D Chain D, Structure Of Nitroreductase From E. Cloacae Complex With
Inhibitor Acetate
pdb|1KQD|A Chain A, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|B Chain B, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|C Chain C, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
pdb|1KQD|D Chain D, Structure Of Nitroreductase From E. Cloacae Bound With 2e-
Reduced Flavin Mononucleotide (Fmn)
Length = 217
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 297 GGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIK 356
G Y F E+++ + H+V+ A+ A D E + ++Q++A G + +HK +
Sbjct: 65 AGTYVFNERKMLDASHVVVFCAKTAMDDAWLERV--VDQEEADGRFNTPEAKA-ANHKGR 121
Query: 357 DHFARLHKMAINLKYIDPTYMIRAIPSN 384
+FA +H+ ++LK D +M + + N
Sbjct: 122 TYFADMHR--VDLKD-DDQWMAKQVYLN 146
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 289 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 344
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 345 PQSGAAVVHEIVRSFG 360
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 277 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 332
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 333 PQSGAAVVHEIVRSFG 348
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 321 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 376
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 377 PQSGAAVVHEIVRSFG 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,697,848
Number of Sequences: 62578
Number of extensions: 649798
Number of successful extensions: 1727
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 33
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)