Query 012056
Match_columns 472
No_of_seqs 263 out of 1545
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 3E-119 6E-124 946.4 42.6 458 6-463 2-459 (484)
2 PRK06830 diphosphate--fructose 100.0 1E-110 3E-115 877.5 38.8 418 32-455 16-442 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 2E-109 3E-114 873.5 39.7 420 34-461 30-452 (459)
4 PLN02884 6-phosphofructokinase 100.0 9E-104 2E-108 820.8 38.8 374 73-453 35-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 9.4E-91 2E-95 718.1 37.2 350 92-451 4-400 (403)
6 PRK14071 6-phosphofructokinase 100.0 2E-86 4.3E-91 683.1 34.1 332 91-443 4-351 (360)
7 PRK14072 6-phosphofructokinase 100.0 3.7E-86 7.9E-91 692.1 33.6 342 91-445 3-386 (416)
8 TIGR02483 PFK_mixed phosphofru 100.0 8.4E-86 1.8E-90 669.9 32.5 316 93-427 1-324 (324)
9 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.1E-85 8.9E-90 722.8 32.8 398 19-445 302-735 (745)
10 cd00763 Bacterial_PFK Phosphof 100.0 1.5E-84 3.3E-89 658.6 33.1 302 92-436 1-308 (317)
11 cd00363 PFK Phosphofructokinas 100.0 3.1E-84 6.7E-89 662.7 34.4 325 92-443 1-336 (338)
12 cd00764 Eukaryotic_PFK Phospho 100.0 1.4E-84 3E-89 715.9 31.8 393 19-444 305-734 (762)
13 TIGR02482 PFKA_ATP 6-phosphofr 100.0 5.7E-84 1.2E-88 649.9 31.8 295 93-427 1-301 (301)
14 PRK03202 6-phosphofructokinase 100.0 5.6E-83 1.2E-87 648.0 33.9 302 92-436 2-310 (320)
15 COG0205 PfkA 6-phosphofructoki 100.0 4.8E-80 1E-84 628.4 32.2 310 91-432 2-318 (347)
16 cd00764 Eukaryotic_PFK Phospho 100.0 2.9E-79 6.3E-84 673.7 34.9 342 90-459 2-373 (762)
17 TIGR02478 6PF1K_euk 6-phosphof 100.0 4.6E-79 9.9E-84 674.7 35.0 340 92-459 1-370 (745)
18 TIGR02477 PFKA_PPi diphosphate 100.0 4.3E-77 9.4E-82 638.0 35.7 341 89-430 65-475 (539)
19 PRK07085 diphosphate--fructose 100.0 2.3E-76 4.9E-81 633.7 36.6 350 91-441 70-507 (555)
20 cd00765 Pyrophosphate_PFK Phos 100.0 1.8E-75 4E-80 624.8 35.5 343 89-432 70-489 (550)
21 PLN03028 pyrophosphate--fructo 100.0 9.5E-75 2.1E-79 624.7 35.1 357 72-429 57-483 (610)
22 PF00365 PFK: Phosphofructokin 100.0 2.5E-75 5.4E-80 583.7 23.8 275 92-404 1-282 (282)
23 PLN02251 pyrophosphate-depende 100.0 1.8E-73 3.8E-78 610.7 33.9 341 89-430 94-502 (568)
24 PTZ00468 phosphofructokinase f 100.0 5.5E-71 1.2E-75 622.1 32.5 338 91-429 102-502 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 3.2E-70 6.9E-75 619.6 33.5 338 90-428 176-572 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 2.5E-63 5.4E-68 563.6 31.0 334 90-428 835-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 1.6E-54 3.5E-59 488.9 30.9 334 91-429 675-1134(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 8.8E-50 1.9E-54 428.2 5.0 467 3-469 24-551 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 9E-46 2E-50 397.4 18.6 350 20-404 293-662 (666)
30 PRK04761 ppnK inorganic polyph 93.4 0.16 3.6E-06 50.5 6.2 62 172-248 11-81 (246)
31 PRK14077 pnk inorganic polypho 92.1 0.39 8.4E-06 48.9 6.9 54 180-248 64-119 (287)
32 PRK04885 ppnK inorganic polyph 91.9 0.46 9.9E-06 47.9 7.0 56 180-248 35-92 (265)
33 PF00532 Peripla_BP_1: Peripla 90.3 2.5 5.4E-05 42.3 10.6 138 160-315 36-185 (279)
34 PRK00561 ppnK inorganic polyph 90.2 0.37 8E-06 48.4 4.5 62 171-247 19-88 (259)
35 PRK03372 ppnK inorganic polyph 90.0 0.48 1E-05 48.7 5.2 55 180-249 72-128 (306)
36 PRK03501 ppnK inorganic polyph 89.9 0.89 1.9E-05 45.8 7.0 55 180-248 39-96 (264)
37 PRK04539 ppnK inorganic polyph 89.1 0.6 1.3E-05 47.8 5.2 54 180-248 68-123 (296)
38 PRK01911 ppnK inorganic polyph 89.1 0.68 1.5E-05 47.3 5.5 56 180-250 64-121 (292)
39 PRK14075 pnk inorganic polypho 88.9 1.1 2.3E-05 44.9 6.7 52 179-248 40-93 (256)
40 PRK02649 ppnK inorganic polyph 88.0 0.8 1.7E-05 47.1 5.2 54 180-248 68-123 (305)
41 PRK03378 ppnK inorganic polyph 87.9 1 2.2E-05 46.0 5.8 53 180-247 63-117 (292)
42 PF01513 NAD_kinase: ATP-NAD k 87.8 0.27 5.8E-06 49.7 1.6 63 171-248 67-131 (285)
43 PRK10014 DNA-binding transcrip 87.5 33 0.00072 34.4 19.4 87 91-215 64-150 (342)
44 PLN02935 Bifunctional NADH kin 86.6 1 2.3E-05 49.1 5.4 54 180-248 262-317 (508)
45 PLN02929 NADH kinase 85.8 0.96 2.1E-05 46.4 4.4 64 179-248 63-136 (301)
46 PRK01231 ppnK inorganic polyph 85.1 1.4 3E-05 45.1 5.2 55 180-249 62-118 (295)
47 PRK10703 DNA-binding transcrip 84.1 49 0.0011 33.2 18.2 70 91-193 59-128 (341)
48 COG3199 Predicted inorganic po 83.9 1.1 2.4E-05 46.5 3.8 50 167-222 87-136 (355)
49 PRK13337 putative lipid kinase 82.8 5.7 0.00012 40.3 8.5 90 166-267 43-132 (304)
50 cd01537 PBP1_Repressors_Sugar_ 82.5 42 0.00092 31.3 19.3 127 93-263 1-127 (264)
51 COG1609 PurR Transcriptional r 82.3 15 0.00033 37.8 11.5 162 92-309 59-233 (333)
52 PRK13055 putative lipid kinase 81.8 3.6 7.8E-05 42.5 6.7 62 167-234 46-107 (334)
53 PRK02645 ppnK inorganic polyph 81.8 1.7 3.7E-05 44.6 4.3 55 180-248 57-114 (305)
54 PRK03708 ppnK inorganic polyph 81.6 0.95 2.1E-05 45.8 2.3 53 179-247 56-110 (277)
55 PRK13054 lipid kinase; Reviewe 81.4 5.1 0.00011 40.6 7.5 89 166-265 42-131 (300)
56 PRK02155 ppnK NAD(+)/NADH kina 80.9 2.5 5.4E-05 43.1 5.0 53 180-247 63-117 (291)
57 PLN02727 NAD kinase 80.7 1.9 4.2E-05 50.1 4.6 55 180-249 743-799 (986)
58 PRK11914 diacylglycerol kinase 80.1 2.6 5.5E-05 42.8 4.9 69 167-243 51-120 (306)
59 cd06281 PBP1_LacI_like_5 Ligan 80.0 58 0.0013 31.2 16.6 90 93-220 1-90 (269)
60 cd06321 PBP1_ABC_sugar_binding 79.7 42 0.00091 32.2 13.1 127 93-261 1-128 (271)
61 PRK14076 pnk inorganic polypho 79.4 3 6.4E-05 46.5 5.4 54 180-248 348-403 (569)
62 TIGR01481 ccpA catabolite cont 79.3 70 0.0015 31.8 17.2 66 92-191 60-126 (329)
63 PRK11303 DNA-binding transcrip 79.2 71 0.0015 31.8 17.2 67 92-191 62-128 (328)
64 PRK02231 ppnK inorganic polyph 78.9 1.6 3.5E-05 44.1 2.9 52 180-246 42-95 (272)
65 cd06278 PBP1_LacI_like_2 Ligan 78.2 50 0.0011 31.3 13.0 41 169-215 43-83 (266)
66 PLN02958 diacylglycerol kinase 77.6 13 0.00027 40.7 9.5 99 124-225 112-215 (481)
67 PRK01185 ppnK inorganic polyph 77.0 4.3 9.3E-05 41.1 5.3 52 180-249 52-105 (271)
68 cd01538 PBP1_ABC_xylose_bindin 76.8 78 0.0017 31.0 21.1 100 93-233 1-102 (288)
69 cd06299 PBP1_LacI_like_13 Liga 75.3 76 0.0017 30.1 18.5 121 93-260 1-122 (265)
70 PRK10423 transcriptional repre 75.3 90 0.002 30.9 18.2 70 91-193 56-125 (327)
71 TIGR02417 fruct_sucro_rep D-fr 75.2 92 0.002 31.0 18.1 67 92-191 61-127 (327)
72 cd06304 PBP1_BmpA_like Peripla 74.3 85 0.0018 30.2 18.7 22 169-190 45-66 (260)
73 PRK13059 putative lipid kinase 73.3 10 0.00022 38.4 6.9 62 175-242 51-112 (295)
74 TIGR03702 lip_kinase_YegS lipi 73.2 12 0.00025 37.9 7.3 61 162-224 34-95 (293)
75 TIGR01918 various_sel_PB selen 72.7 7.2 0.00016 41.8 5.8 115 90-209 222-366 (431)
76 TIGR00147 lipid kinase, YegS/R 72.3 6.8 0.00015 39.3 5.4 50 170-224 47-98 (293)
77 COG1570 XseA Exonuclease VII, 71.5 15 0.00032 39.7 7.9 92 91-214 135-230 (440)
78 TIGR01917 gly_red_sel_B glycin 71.5 7.9 0.00017 41.5 5.8 119 90-210 222-367 (431)
79 PRK00861 putative lipid kinase 70.0 8.2 0.00018 39.0 5.5 69 166-242 43-111 (300)
80 cd06317 PBP1_ABC_sugar_binding 69.8 1E+02 0.0023 29.3 14.5 22 170-191 46-67 (275)
81 cd06283 PBP1_RegR_EndR_KdgR_li 69.0 1.1E+02 0.0023 29.0 14.2 120 94-260 2-122 (267)
82 COG1597 LCB5 Sphingosine kinas 68.7 18 0.00039 37.0 7.6 69 168-244 46-116 (301)
83 COG0061 nadF NAD kinase [Coenz 68.2 8.4 0.00018 39.0 5.1 44 179-237 54-97 (281)
84 cd08180 PDD 1,3-propanediol de 68.1 8.5 0.00019 39.6 5.2 51 168-218 66-118 (332)
85 cd06273 PBP1_GntR_like_1 This 67.8 1.1E+02 0.0025 29.0 13.9 41 169-215 44-84 (268)
86 cd08173 Gro1PDH Sn-glycerol-1- 67.7 9.2 0.0002 39.5 5.4 54 167-225 65-118 (339)
87 cd08195 DHQS Dehydroquinate sy 66.9 5.9 0.00013 41.1 3.7 49 168-219 70-121 (345)
88 PRK13057 putative lipid kinase 66.7 11 0.00024 37.8 5.6 84 168-266 39-122 (287)
89 cd06298 PBP1_CcpA_like Ligand- 66.6 1.2E+02 0.0026 28.8 14.3 77 169-261 44-123 (268)
90 PRK12361 hypothetical protein; 66.2 15 0.00034 40.4 7.1 54 166-224 283-336 (547)
91 PRK00002 aroB 3-dehydroquinate 65.8 7.6 0.00016 40.5 4.3 63 168-236 77-142 (358)
92 PF00465 Fe-ADH: Iron-containi 65.6 6.2 0.00014 41.1 3.7 56 167-222 65-134 (366)
93 cd08172 GlyDH-like1 Glycerol d 65.4 9.6 0.00021 39.5 5.0 51 167-222 63-113 (347)
94 cd06302 PBP1_LsrB_Quorum_Sensi 65.1 1.5E+02 0.0032 29.3 14.7 86 93-215 1-87 (298)
95 cd08551 Fe-ADH iron-containing 64.4 12 0.00027 38.9 5.6 55 168-222 68-135 (370)
96 cd08170 GlyDH Glycerol dehydro 64.0 11 0.00025 38.9 5.2 47 168-219 65-111 (351)
97 cd08177 MAR Maleylacetate redu 61.2 14 0.0003 38.2 5.2 48 168-220 65-112 (337)
98 cd01575 PBP1_GntR Ligand-bindi 61.2 1.5E+02 0.0032 28.0 20.3 66 94-192 2-67 (268)
99 PRK14987 gluconate operon tran 61.1 1.8E+02 0.0039 29.0 19.2 66 92-190 64-129 (331)
100 cd08199 EEVS 2-epi-5-epi-valio 60.8 8.8 0.00019 40.2 3.7 64 168-237 72-139 (354)
101 PRK00843 egsA NAD(P)-dependent 60.3 15 0.00032 38.3 5.2 48 168-220 75-122 (350)
102 TIGR01357 aroB 3-dehydroquinat 59.4 9.8 0.00021 39.3 3.7 49 168-219 66-117 (344)
103 cd08189 Fe-ADH5 Iron-containin 59.1 19 0.0004 37.8 5.8 53 168-220 71-137 (374)
104 cd08186 Fe-ADH8 Iron-containin 58.7 18 0.00038 38.1 5.6 35 168-202 72-106 (383)
105 cd06274 PBP1_FruR Ligand bindi 58.2 1.7E+02 0.0037 27.8 16.3 23 169-191 44-66 (264)
106 cd07766 DHQ_Fe-ADH Dehydroquin 58.1 15 0.00033 37.5 4.8 51 168-221 66-116 (332)
107 cd08179 NADPH_BDH NADPH-depend 56.8 20 0.00044 37.5 5.7 33 168-200 69-101 (375)
108 cd08197 DOIS 2-deoxy-scyllo-in 56.8 14 0.00031 38.7 4.4 59 168-232 69-130 (355)
109 cd06533 Glyco_transf_WecG_TagA 56.7 46 0.001 31.0 7.4 88 90-189 45-133 (171)
110 cd08196 DHQS-like1 Dehydroquin 56.7 13 0.00028 38.9 4.1 65 168-238 61-128 (346)
111 cd08194 Fe-ADH6 Iron-containin 56.3 20 0.00043 37.6 5.5 51 168-218 68-131 (375)
112 COG4981 Enoyl reductase domain 55.7 96 0.0021 34.7 10.4 95 170-287 111-218 (717)
113 cd08550 GlyDH-like Glycerol_de 55.4 17 0.00036 37.7 4.7 51 168-223 65-115 (349)
114 PRK10727 DNA-binding transcrip 55.0 1.9E+02 0.0042 29.0 12.3 22 170-191 105-126 (343)
115 PRK15454 ethanol dehydrogenase 54.4 21 0.00046 37.9 5.3 51 168-218 94-157 (395)
116 PRK09423 gldA glycerol dehydro 54.3 21 0.00045 37.3 5.2 46 168-218 72-117 (366)
117 PLN02834 3-dehydroquinate synt 54.3 12 0.00026 40.3 3.5 63 168-236 148-213 (433)
118 cd08178 AAD_C C-terminal alcoh 54.2 26 0.00057 37.1 6.0 33 168-200 66-98 (398)
119 TIGR02638 lactal_redase lactal 53.8 22 0.00049 37.3 5.4 51 168-218 74-139 (379)
120 PRK10401 DNA-binding transcrip 53.6 2.5E+02 0.0054 28.2 17.1 65 92-190 60-125 (346)
121 cd08182 HEPD Hydroxyethylphosp 53.0 23 0.0005 36.9 5.3 52 168-219 65-133 (367)
122 cd06292 PBP1_LacI_like_10 Liga 52.7 2.1E+02 0.0046 27.2 18.7 64 94-190 2-65 (273)
123 PRK06186 hypothetical protein; 52.6 26 0.00056 34.7 5.2 47 180-241 53-101 (229)
124 cd08181 PPD-like 1,3-propanedi 52.3 26 0.00056 36.5 5.5 52 168-219 71-134 (357)
125 cd08193 HVD 5-hydroxyvalerate 52.2 26 0.00056 36.7 5.5 52 168-219 71-135 (376)
126 PRK15138 aldehyde reductase; P 51.2 25 0.00055 37.2 5.3 34 168-201 73-106 (387)
127 cd06296 PBP1_CatR_like Ligand- 50.9 2.2E+02 0.0049 26.9 15.2 41 169-215 44-84 (270)
128 cd08185 Fe-ADH1 Iron-containin 49.7 26 0.00057 36.7 5.1 52 168-219 71-140 (380)
129 smart00046 DAGKc Diacylglycero 49.6 17 0.00037 31.9 3.1 42 180-224 49-93 (124)
130 PRK09860 putative alcohol dehy 49.2 33 0.00072 36.2 5.8 52 168-219 76-140 (383)
131 cd06277 PBP1_LacI_like_1 Ligan 49.0 2.4E+02 0.0053 26.8 12.2 22 170-191 48-69 (268)
132 PRK15395 methyl-galactoside AB 48.9 3E+02 0.0065 27.8 16.6 90 89-215 22-112 (330)
133 PRK10586 putative oxidoreducta 48.6 22 0.00048 37.3 4.3 59 169-233 76-134 (362)
134 cd01545 PBP1_SalR Ligand-bindi 48.6 2.4E+02 0.0052 26.6 13.7 43 169-216 45-87 (270)
135 PRK10355 xylF D-xylose transpo 48.5 1.3E+02 0.0028 30.7 9.8 92 90-219 24-116 (330)
136 cd06295 PBP1_CelR Ligand bindi 48.5 2.5E+02 0.0054 26.8 13.9 41 170-216 54-94 (275)
137 cd08176 LPO Lactadehyde:propan 48.3 34 0.00073 35.9 5.7 52 168-219 73-137 (377)
138 COG0041 PurE Phosphoribosylcar 47.9 35 0.00076 31.9 4.9 10 209-218 80-89 (162)
139 PF02601 Exonuc_VII_L: Exonucl 47.9 1.4E+02 0.003 30.4 9.9 96 91-218 14-117 (319)
140 PRK13951 bifunctional shikimat 47.2 19 0.0004 39.5 3.6 107 125-238 173-289 (488)
141 cd08171 GlyDH-like2 Glycerol d 47.0 31 0.00067 35.7 5.1 47 168-219 66-112 (345)
142 cd06294 PBP1_ycjW_transcriptio 46.8 2.6E+02 0.0056 26.5 13.7 40 170-215 50-89 (270)
143 PF00781 DAGK_cat: Diacylglyce 46.5 16 0.00036 32.0 2.6 64 169-238 42-108 (130)
144 PRK10624 L-1,2-propanediol oxi 46.2 35 0.00077 35.9 5.4 51 168-218 75-140 (382)
145 cd08198 DHQS-like2 Dehydroquin 45.7 30 0.00064 36.7 4.7 64 169-238 85-151 (369)
146 cd01539 PBP1_GGBP Periplasmic 45.6 3.1E+02 0.0068 27.1 17.3 42 169-214 46-87 (303)
147 cd06297 PBP1_LacI_like_12 Liga 45.0 1.3E+02 0.0029 28.9 9.0 41 169-213 43-84 (269)
148 PRK02261 methylaspartate mutas 44.7 1.6E+02 0.0034 26.6 8.7 123 91-246 3-133 (137)
149 cd08184 Fe-ADH3 Iron-containin 44.5 46 0.001 34.8 5.9 53 168-220 66-134 (347)
150 cd08183 Fe-ADH2 Iron-containin 44.5 37 0.00079 35.6 5.2 34 168-201 63-96 (374)
151 cd08174 G1PDH-like Glycerol-1- 44.3 40 0.00087 34.6 5.4 54 167-225 61-115 (331)
152 cd08192 Fe-ADH7 Iron-containin 44.1 43 0.00092 35.0 5.6 54 168-221 69-139 (370)
153 cd01542 PBP1_TreR_like Ligand- 43.9 2.3E+02 0.005 26.7 10.3 66 94-192 2-67 (259)
154 PRK05670 anthranilate synthase 43.6 34 0.00073 32.2 4.3 22 176-197 39-60 (189)
155 PF07905 PucR: Purine cataboli 43.6 61 0.0013 28.4 5.7 89 124-217 12-107 (123)
156 PF02645 DegV: Uncharacterised 42.9 74 0.0016 31.9 7.0 108 93-213 1-114 (280)
157 COG1454 EutG Alcohol dehydroge 42.7 43 0.00094 35.6 5.4 51 168-218 74-137 (377)
158 cd06289 PBP1_MalI_like Ligand- 42.6 3E+02 0.0064 25.9 12.7 42 169-215 44-85 (268)
159 cd06279 PBP1_LacI_like_3 Ligan 42.2 3.3E+02 0.0071 26.3 14.1 39 171-215 47-85 (283)
160 TIGR00288 conserved hypothetic 41.6 44 0.00095 31.3 4.6 50 166-218 88-140 (160)
161 cd08549 G1PDH_related Glycerol 41.6 43 0.00093 34.6 5.1 49 168-222 69-117 (332)
162 cd01536 PBP1_ABC_sugar_binding 41.5 3E+02 0.0065 25.7 20.1 86 93-215 1-86 (267)
163 cd01391 Periplasmic_Binding_Pr 41.5 2.8E+02 0.006 25.3 12.1 83 168-261 46-131 (269)
164 cd08190 HOT Hydroxyacid-oxoaci 41.3 47 0.001 35.4 5.5 33 168-200 68-100 (414)
165 PRK15458 tagatose 6-phosphate 41.2 3E+02 0.0064 29.9 11.2 140 92-260 15-172 (426)
166 cd06349 PBP1_ABC_ligand_bindin 41.1 1.3E+02 0.0029 30.1 8.6 104 103-214 115-221 (340)
167 cd06290 PBP1_LacI_like_9 Ligan 40.9 3.2E+02 0.0069 25.8 13.7 24 169-192 44-67 (265)
168 cd08187 BDH Butanol dehydrogen 40.8 46 0.001 35.0 5.3 54 168-221 74-140 (382)
169 TIGR00732 dprA DNA protecting 40.6 2.1E+02 0.0046 27.9 9.5 103 97-221 77-193 (220)
170 cd08169 DHQ-like Dehydroquinat 40.4 32 0.0007 35.8 4.0 64 168-237 68-134 (344)
171 cd03822 GT1_ecORF704_like This 40.2 2.2E+02 0.0048 27.8 9.8 85 93-190 1-86 (366)
172 cd08188 Fe-ADH4 Iron-containin 40.1 59 0.0013 34.1 6.0 52 168-219 73-137 (377)
173 TIGR01162 purE phosphoribosyla 39.8 33 0.00072 32.0 3.5 51 163-219 36-86 (156)
174 TIGR03405 Phn_Fe-ADH phosphona 39.8 55 0.0012 34.1 5.6 34 168-201 66-101 (355)
175 COG0371 GldA Glycerol dehydrog 39.7 38 0.00082 35.8 4.3 54 167-225 71-124 (360)
176 cd08175 G1PDH Glycerol-1-phosp 39.5 37 0.00081 35.1 4.3 44 169-218 70-113 (348)
177 PRK06203 aroB 3-dehydroquinate 38.7 45 0.00097 35.5 4.8 64 169-238 97-163 (389)
178 cd08191 HHD 6-hydroxyhexanoate 38.6 49 0.0011 34.8 5.1 51 169-219 68-131 (386)
179 PRK05637 anthranilate synthase 38.5 58 0.0013 31.5 5.2 52 174-238 38-89 (208)
180 TIGR00640 acid_CoA_mut_C methy 38.1 2.3E+02 0.0049 25.4 8.6 118 91-245 2-125 (132)
181 PRK09492 treR trehalose repres 38.0 4E+02 0.0087 26.1 17.8 65 92-189 63-127 (315)
182 PRK13111 trpA tryptophan synth 37.7 1.6E+02 0.0035 29.5 8.4 49 168-218 105-153 (258)
183 PF05036 SPOR: Sporulation rel 37.1 39 0.00084 26.0 3.1 50 160-209 9-71 (76)
184 TIGR02810 agaZ_gatZ D-tagatose 36.7 5.6E+02 0.012 27.8 12.4 140 92-260 11-168 (420)
185 cd06287 PBP1_LacI_like_8 Ligan 36.7 4E+02 0.0087 25.8 14.9 21 99-119 13-35 (269)
186 TIGR00215 lpxB lipid-A-disacch 36.6 83 0.0018 33.0 6.4 90 93-191 7-100 (385)
187 PRK03692 putative UDP-N-acetyl 36.5 1.2E+02 0.0026 30.2 7.2 86 91-189 105-191 (243)
188 TIGR00566 trpG_papA glutamine 36.4 48 0.001 31.3 4.2 52 174-238 37-88 (188)
189 cd06320 PBP1_allose_binding Pe 36.4 3.9E+02 0.0084 25.5 13.0 45 169-217 46-90 (275)
190 PF04405 ScdA_N: Domain of Unk 36.3 37 0.00081 26.2 2.8 27 169-197 12-38 (56)
191 cd06315 PBP1_ABC_sugar_binding 36.0 1.8E+02 0.004 28.2 8.4 66 93-191 2-67 (280)
192 cd07995 TPK Thiamine pyrophosp 35.7 1.4E+02 0.003 28.6 7.3 90 96-192 2-102 (208)
193 PRK14021 bifunctional shikimat 34.7 34 0.00074 37.9 3.3 64 169-238 255-321 (542)
194 cd06293 PBP1_LacI_like_11 Liga 34.5 4.1E+02 0.0089 25.2 15.3 90 169-274 44-143 (269)
195 cd02071 MM_CoA_mut_B12_BD meth 34.5 1.9E+02 0.0042 25.1 7.5 45 148-192 42-91 (122)
196 CHL00101 trpG anthranilate syn 34.3 48 0.001 31.3 3.8 21 175-195 38-58 (190)
197 cd06167 LabA_like LabA_like pr 33.3 62 0.0014 28.6 4.2 43 171-216 90-132 (149)
198 cd06285 PBP1_LacI_like_7 Ligan 33.3 4.2E+02 0.0092 25.0 18.4 66 94-192 2-67 (265)
199 cd06307 PBP1_uncharacterized_s 33.3 4.4E+02 0.0095 25.2 13.4 46 170-224 49-94 (275)
200 TIGR00237 xseA exodeoxyribonuc 33.0 3.2E+02 0.0069 29.5 10.2 40 181-220 188-231 (432)
201 PRK01045 ispH 4-hydroxy-3-meth 32.8 1.2E+02 0.0025 31.3 6.5 78 168-247 199-280 (298)
202 TIGR01501 MthylAspMutase methy 32.4 3.1E+02 0.0068 24.8 8.5 120 93-245 3-130 (134)
203 PF02401 LYTB: LytB protein; 31.8 1.7E+02 0.0037 29.9 7.5 77 168-246 198-278 (281)
204 cd01574 PBP1_LacI Ligand-bindi 31.6 4.4E+02 0.0096 24.8 19.5 68 94-194 2-70 (264)
205 PRK13293 F420-0--gamma-glutamy 31.6 1.2E+02 0.0026 30.5 6.1 58 255-321 90-152 (245)
206 PRK06774 para-aminobenzoate sy 31.2 47 0.001 31.2 3.2 22 174-195 37-58 (191)
207 PRK00286 xseA exodeoxyribonucl 30.6 3.4E+02 0.0074 29.0 10.0 46 176-221 188-237 (438)
208 PF04263 TPK_catalytic: Thiami 30.5 2.1E+02 0.0046 25.3 7.1 68 125-192 18-96 (123)
209 cd03409 Chelatase_Class_II Cla 30.1 3E+02 0.0066 22.4 8.6 67 95-193 3-76 (101)
210 cd02072 Glm_B12_BD B12 binding 29.8 91 0.002 28.1 4.6 25 167-191 65-90 (128)
211 PF00289 CPSase_L_chain: Carba 29.5 80 0.0017 27.4 4.1 45 167-215 61-105 (110)
212 PLN02204 diacylglycerol kinase 29.5 67 0.0015 36.2 4.4 69 124-196 160-234 (601)
213 PF01936 NYN: NYN domain; Int 29.4 51 0.0011 28.8 2.9 45 172-219 87-131 (146)
214 PRK04011 peptide chain release 29.3 1.8E+02 0.0038 31.3 7.5 22 268-289 300-321 (411)
215 COG0504 PyrG CTP synthase (UTP 29.3 87 0.0019 34.5 5.1 50 181-245 344-395 (533)
216 TIGR01861 ANFD nitrogenase iro 29.2 1.7E+02 0.0037 32.4 7.5 106 93-200 131-248 (513)
217 PLN02335 anthranilate synthase 29.2 69 0.0015 31.2 4.1 46 176-234 58-103 (222)
218 KOG1116 Sphingosine kinase, in 29.0 33 0.00072 38.2 1.9 106 168-278 224-334 (579)
219 PF00710 Asparaginase: Asparag 29.0 2.7E+02 0.0059 28.6 8.5 60 167-227 57-118 (313)
220 PRK05096 guanosine 5'-monophos 28.8 2.7E+02 0.0058 29.4 8.3 104 169-288 138-243 (346)
221 cd00537 MTHFR Methylenetetrahy 28.5 70 0.0015 31.9 4.1 88 125-216 30-137 (274)
222 PLN02821 1-hydroxy-2-methyl-2- 28.4 1.1E+02 0.0024 33.3 5.7 52 168-220 350-401 (460)
223 cd06313 PBP1_ABC_sugar_binding 27.7 5.6E+02 0.012 24.6 12.7 125 169-310 44-181 (272)
224 TIGR01302 IMP_dehydrog inosine 27.6 2.1E+02 0.0045 31.0 7.8 101 169-288 252-357 (450)
225 cd04234 AAK_AK AAK_AK: Amino A 27.6 3.4E+02 0.0073 26.3 8.6 37 154-193 5-43 (227)
226 smart00481 POLIIIAc DNA polyme 27.2 1.8E+02 0.0039 22.2 5.4 51 167-219 15-65 (67)
227 PF02844 GARS_N: Phosphoribosy 27.0 64 0.0014 27.9 3.0 45 166-215 48-92 (100)
228 PLN00197 beta-amylase; Provisi 26.6 3.8E+02 0.0082 30.1 9.4 100 169-268 129-278 (573)
229 PF00731 AIRC: AIR carboxylase 26.6 43 0.00094 31.0 2.0 50 163-218 38-87 (150)
230 KOG2178 Predicted sugar kinase 26.4 28 0.0006 37.1 0.7 55 179-248 167-223 (409)
231 TIGR03822 AblA_like_2 lysine-2 26.3 7.2E+02 0.016 25.5 14.3 160 96-266 140-310 (321)
232 PRK09526 lacI lac repressor; R 26.0 6.6E+02 0.014 24.9 13.6 22 170-191 110-131 (342)
233 COG1122 CbiO ABC-type cobalt t 26.0 1.9E+02 0.0042 28.5 6.6 98 217-318 95-196 (235)
234 cd06342 PBP1_ABC_LIVBP_like Ty 25.9 4.4E+02 0.0096 25.9 9.3 101 105-214 117-221 (334)
235 PRK13805 bifunctional acetalde 25.5 1.1E+02 0.0024 35.9 5.5 33 168-200 527-559 (862)
236 PRK10247 putative ABC transpor 25.0 1.6E+02 0.0034 28.2 5.7 59 261-320 137-197 (225)
237 COG0206 FtsZ Cell division GTP 24.9 1.3E+02 0.0029 31.5 5.4 206 90-322 10-232 (338)
238 PF13685 Fe-ADH_2: Iron-contai 24.8 48 0.001 33.2 2.1 50 169-223 64-113 (250)
239 cd06335 PBP1_ABC_ligand_bindin 24.8 5.4E+02 0.012 25.9 9.9 61 151-214 161-224 (347)
240 PLN02803 beta-amylase 24.8 4.3E+02 0.0093 29.6 9.3 100 169-268 109-258 (548)
241 PF03808 Glyco_tran_WecB: Glyc 24.6 3.1E+02 0.0067 25.4 7.4 87 91-189 48-135 (172)
242 TIGR03820 lys_2_3_AblA lysine- 24.6 9.2E+02 0.02 26.1 14.3 160 95-265 158-327 (417)
243 PRK15052 D-tagatose-1,6-bispho 24.5 9.3E+02 0.02 26.2 12.0 139 93-260 13-168 (421)
244 TIGR00216 ispH_lytB (E)-4-hydr 24.3 2.4E+02 0.0053 28.8 7.1 52 167-220 196-247 (280)
245 TIGR00262 trpA tryptophan synt 24.1 1.1E+02 0.0024 30.5 4.6 49 168-218 103-151 (256)
246 KOG1251 Serine racemase [Signa 23.9 2E+02 0.0043 29.3 6.0 53 148-200 111-194 (323)
247 cd03238 ABC_UvrA The excision 23.5 1.7E+02 0.0037 27.4 5.4 58 260-319 86-147 (176)
248 cd06305 PBP1_methylthioribose_ 23.3 6.4E+02 0.014 23.8 17.4 82 170-261 45-127 (273)
249 PRK06843 inosine 5-monophospha 23.1 9.6E+02 0.021 25.8 11.6 122 147-287 156-285 (404)
250 PRK11629 lolD lipoprotein tran 23.1 1.8E+02 0.004 27.8 5.8 49 270-319 154-204 (233)
251 cd06291 PBP1_Qymf_like Ligand 22.8 6.4E+02 0.014 23.7 9.6 67 93-192 1-67 (265)
252 PRK10771 thiQ thiamine transpo 22.8 1.8E+02 0.004 27.8 5.7 58 261-319 129-188 (232)
253 TIGR01916 F420_cofE F420-0:gam 22.7 2.2E+02 0.0048 28.6 6.2 57 255-320 89-150 (243)
254 COG2086 FixA Electron transfer 22.5 8.1E+02 0.018 24.7 10.7 114 216-355 21-137 (260)
255 PLN02705 beta-amylase 22.5 5.1E+02 0.011 29.6 9.5 102 169-270 270-422 (681)
256 PRK15404 leucine ABC transport 22.4 5.1E+02 0.011 26.7 9.3 63 149-214 182-247 (369)
257 TIGR00676 fadh2 5,10-methylene 22.3 1E+02 0.0023 30.8 4.0 50 168-217 74-135 (272)
258 PTZ00314 inosine-5'-monophosph 22.1 6.4E+02 0.014 27.7 10.3 98 171-288 271-374 (495)
259 PRK08007 para-aminobenzoate sy 22.1 96 0.0021 29.2 3.5 23 174-196 37-59 (187)
260 cd01744 GATase1_CPSase Small c 21.9 1.5E+02 0.0032 27.6 4.6 49 176-239 35-86 (178)
261 PRK12360 4-hydroxy-3-methylbut 21.8 2.4E+02 0.0051 28.9 6.4 52 168-221 198-249 (281)
262 TIGR00696 wecB_tagA_cpsF bacte 21.8 3.4E+02 0.0074 25.6 7.1 86 91-189 48-134 (177)
263 PLN02801 beta-amylase 21.7 5.7E+02 0.012 28.5 9.5 100 169-268 39-189 (517)
264 PRK13371 4-hydroxy-3-methylbut 21.4 2.2E+02 0.0047 30.6 6.2 54 167-221 275-328 (387)
265 cd06326 PBP1_STKc_like Type I 21.2 6.8E+02 0.015 24.6 9.7 102 104-215 118-223 (336)
266 cd06347 PBP1_ABC_ligand_bindin 21.2 5.4E+02 0.012 25.2 8.9 59 153-214 161-222 (334)
267 PF04122 CW_binding_2: Putativ 21.2 1.4E+02 0.0031 24.4 4.0 37 156-194 50-86 (92)
268 cd02067 B12-binding B12 bindin 21.1 4.6E+02 0.0099 22.2 7.3 26 168-193 66-92 (119)
269 TIGR01769 GGGP geranylgeranylg 21.1 2.3E+02 0.005 27.5 5.9 58 168-227 12-71 (205)
270 COG0763 LpxB Lipid A disacchar 21.1 3.1E+02 0.0068 29.3 7.3 108 92-214 2-116 (381)
271 PRK15447 putative protease; Pr 21.0 1.7E+02 0.0036 29.9 5.2 23 270-292 18-40 (301)
272 PF09288 UBA_3: Fungal ubiquit 21.0 1.5E+02 0.0033 23.0 3.6 46 144-203 8-53 (55)
273 PRK02399 hypothetical protein; 20.9 1.2E+02 0.0027 32.5 4.3 87 124-219 31-126 (406)
274 PRK07649 para-aminobenzoate/an 20.9 93 0.002 29.6 3.1 36 157-195 23-58 (195)
275 PRK04155 chaperone protein Hch 20.9 9E+02 0.019 24.6 11.3 41 168-208 133-181 (287)
276 cd00381 IMPDH IMPDH: The catal 20.9 9.3E+02 0.02 24.8 11.0 104 168-286 121-225 (325)
277 cd06314 PBP1_tmGBP Periplasmic 20.7 7.3E+02 0.016 23.6 17.2 22 169-190 44-65 (271)
278 KOG4180 Predicted kinase [Gene 20.7 45 0.00098 34.8 1.0 29 181-215 106-135 (395)
279 COG0414 PanC Panthothenate syn 20.6 1.3E+02 0.0029 30.7 4.2 34 251-285 18-52 (285)
280 PF04208 MtrA: Tetrahydrometha 20.5 1.9E+02 0.0042 27.5 5.0 53 155-208 40-95 (176)
281 PLN02905 beta-amylase 20.3 5.9E+02 0.013 29.2 9.4 102 169-270 288-440 (702)
282 TIGR01284 alt_nitrog_alph nitr 20.2 2.8E+02 0.0061 30.0 7.0 105 93-199 128-244 (457)
283 cd06268 PBP1_ABC_transporter_L 20.2 7.2E+02 0.016 23.3 9.9 60 152-214 159-221 (298)
284 cd06337 PBP1_ABC_ligand_bindin 20.2 2.4E+02 0.0051 28.8 6.2 62 151-215 171-235 (357)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=2.7e-119 Score=946.37 Aligned_cols=458 Identities=88% Similarity=1.373 Sum_probs=432.2
Q ss_pred CCCceeecCCCCcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCCCCcccccccCCcccc
Q 012056 6 NLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKV 85 (472)
Q Consensus 6 ~~~~~~~~~~~~~~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~~~~~~f~~~~~~~~~ 85 (472)
..+.|+++++..+.+|.||||.++.|+.|.+++||..|+.++.....||++++.|+..+..++...++..|++||||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i 81 (484)
T PLN02564 2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV 81 (484)
T ss_pred CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence 45789999999999999999999999999999999999999988899999999999987666556678899999999999
Q ss_pred cccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC
Q 012056 86 YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (472)
Q Consensus 86 ~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~ 165 (472)
||+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|++|++|+++|||+|||||+
T Consensus 82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~ 161 (484)
T PLN02564 82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG 161 (484)
T ss_pred EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence 99999999999999999999999999999988777787899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHH
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~ 245 (472)
++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|++
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~ 241 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 241 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcch
Q 012056 246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDL 325 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~ 325 (472)
+++||.|+++||||||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+
T Consensus 242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~ 321 (484)
T PLN02564 242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL 321 (484)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence 99999999889999999999999999999999966999999999999998889999999999999999999999998877
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
+.+......++|++||++|+|++.+|+++|+++++.+.+..+++||++|||+|||++|+++||+||++||+.|||++++|
T Consensus 322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG 401 (484)
T PLN02564 322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG 401 (484)
T ss_pred hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 76544333468999999999999999999999985444556789999999999999999999999999999999999999
Q ss_pred CCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHHhcCCCCCCChHHHHHhhh
Q 012056 406 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKR 463 (472)
Q Consensus 406 ~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~~~ 463 (472)
+||+||+++|++++++||++++..+|+|++++.+|.++|++||||+|+++++....++
T Consensus 402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~ 459 (484)
T PLN02564 402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKR 459 (484)
T ss_pred CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999877664443
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=1.3e-110 Score=877.48 Aligned_cols=418 Identities=52% Similarity=0.858 Sum_probs=390.2
Q ss_pred CCCCCcCCCCCCcccccccccccccchHHHHHHHhccC------CCCcccccccCCcccccccCCCeeEEEEccCCCCCc
Q 012056 32 DLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKD------SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPG 105 (472)
Q Consensus 32 ~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~~~~~iaIltsGG~apG 105 (472)
..+.+++||..+...+... +||++++.|+..+..+.. ..+...|++||||+++||+|+++||||+||||||||
T Consensus 16 g~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PG 94 (443)
T PRK06830 16 GECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPG 94 (443)
T ss_pred CCCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchH
Confidence 3578899999887777776 899999999887654322 235578999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCeeccChhHHhhhhhcCCcccccccCCCChHHHHHHHHHhCCc
Q 012056 106 LNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGIN 182 (472)
Q Consensus 106 mNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id 182 (472)
||++||++|+.+.+.|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||+++++++++++|++++||
T Consensus 95 mN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~ 174 (443)
T PRK06830 95 LNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNIN 174 (443)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCC
Confidence 999999999998877888899999999999998 89999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEe
Q 012056 183 QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKL 262 (472)
Q Consensus 183 ~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEv 262 (472)
+||+|||||||++|++|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+
T Consensus 175 ~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEv 254 (443)
T PRK06830 175 ILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKL 254 (443)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhhhhcccccCCc
Q 012056 263 MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNK 342 (472)
Q Consensus 263 MGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~ 342 (472)
|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+... ..++|+|||+
T Consensus 255 MGR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~----~~~~Da~gn~ 330 (443)
T PRK06830 255 MGRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDD----TGETDASGNP 330 (443)
T ss_pred CCCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccc----cccccccCCc
Confidence 999999999999999867999999999999999999999999999999999999999998766532 2458999999
Q ss_pred cccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCeeeeec
Q 012056 343 LLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIP 422 (472)
Q Consensus 343 ~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~~~~~vP 422 (472)
++++++.+|+++|+++++. ....+++||++|||+|||++||++||+||++||+.|||++|+|+||+||++++++++++|
T Consensus 331 ~l~~ig~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vP 409 (443)
T PRK06830 331 KLGDIGLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLP 409 (443)
T ss_pred ccccHHHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEe
Confidence 9999999999999999863 234578999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCccCccHHHHHHHHHhcCCCCCCCh
Q 012056 423 FNRINERQNQVVITDRMWARVLSSTNQPSFLSA 455 (472)
Q Consensus 423 l~~v~~~~~~v~~~~~~~~~~l~~t~qp~~~~~ 455 (472)
|++++..+|++++++.+|+++|++||||.|+.+
T Consensus 410 l~~v~~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 410 IDLAVSKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred HHHHhccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 999999889999999999999999999999864
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=1.5e-109 Score=873.51 Aligned_cols=420 Identities=50% Similarity=0.835 Sum_probs=383.3
Q ss_pred CCCcCCCCCCcccccccccccccchHHHHHHHhccC--CCCcccccccCCcccccccCCCeeEEEEccCCCCCchhHHHH
Q 012056 34 PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKD--SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIR 111 (472)
Q Consensus 34 ~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~iaIltsGG~apGmNa~Ir 111 (472)
+.+++|+.+.. ..|...||++++.|+..+..++. ..+...|++||||+++||+|+++|||||||||||||||++||
T Consensus 30 ~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr 107 (459)
T PTZ00286 30 CNLRGVFGGNG--FLPREAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIR 107 (459)
T ss_pred CCCCCCccccc--cCCccceecCCCeEEeecccCccccccccchheecCCceeEEEcccccEEEEECCCCCChHHHHHHH
Confidence 44455554321 12334799999999988765442 235678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHHHHHHHHhCCcEEEEEcCCC
Q 012056 112 EIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 112 ~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdg 191 (472)
++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+++++++++++|++++||+||+|||||
T Consensus 108 ~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdg 187 (459)
T PTZ00286 108 ELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDG 187 (459)
T ss_pred HHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChhhHHHHHHHHHHcCCCEEEEeCCch
Confidence 99999877788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHH
Q 012056 192 TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIA 271 (472)
Q Consensus 192 s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA 271 (472)
||++|.+|++++++++++|+||||||||||||++||+|||||||+++++++|+++++||.|+++||||||+|||+|||||
T Consensus 188 T~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~~eA~S~~~~v~iVEvMGR~sG~LA 267 (459)
T PTZ00286 188 THRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAYVEAKSAKNGVGIVKLMGRDSGFIA 267 (459)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHH
Q 012056 272 MYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWI 351 (472)
Q Consensus 272 ~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l 351 (472)
++++||+++||+|||||.||+++ +++++|++|+++++|+|||||||+.+.+.+... ..++|++||++++|++.+|
T Consensus 268 l~aaLA~~~ad~vlIPE~~f~l~---~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~--~~~~D~~Gn~~l~dig~~L 342 (459)
T PTZ00286 268 LHASVASADVNVCLIPEFDIPLE---GVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL--DLGTDASGNKKLWDIGVYL 342 (459)
T ss_pred HHHhhhhcCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEecCCccccccccc--cccccccCCcccccHHHHH
Confidence 99999995599999999999987 899999999999999999999999887665443 2358999999999999999
Q ss_pred HHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCeeeeechhh-hhhcC
Q 012056 352 SHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNR-INERQ 430 (472)
Q Consensus 352 ~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~~~~~vPl~~-v~~~~ 430 (472)
+++|+++++. .+..+++||++|||+|||++||++|++||++||+.|||++|+|+||+||++++++++++||++ ..+.+
T Consensus 343 ~~~I~~~~~~-~~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v~~~~~ 421 (459)
T PTZ00286 343 KDEITKYLKK-KKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIGHVHNNYVMIPIKEMSGNYR 421 (459)
T ss_pred HHHHHHHHhh-ccCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeHHHHhCCCc
Confidence 9999999863 345678999999999999999999999999999999999999999999999999999999999 45677
Q ss_pred CccCccHHHHHHHHHhcCCCCCCChHHHHHh
Q 012056 431 NQVVITDRMWARVLSSTNQPSFLSANELAKF 461 (472)
Q Consensus 431 ~~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~ 461 (472)
|++++++.+|.+++++||||+|+.+++....
T Consensus 422 ~~v~~~~~~w~~~~~~tgqp~~~~~~~~~~~ 452 (459)
T PTZ00286 422 RRVNPEGRLWQRMLAITGQPSFLNNEEIERH 452 (459)
T ss_pred cccCcchHHHHHHHHhcCCCCccccHHHHHH
Confidence 8999999999999999999999997665543
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=8.8e-104 Score=820.76 Aligned_cols=374 Identities=55% Similarity=0.927 Sum_probs=349.4
Q ss_pred cccccccCCcccccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC--eeccChhHHh
Q 012056 73 GTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN--TINLTPKVVN 150 (472)
Q Consensus 73 ~~~f~~~~~~~~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~--~~~L~~~~v~ 150 (472)
...|.|||||+++||+|.++|||||||||||||||++||++|+.+. .++..+||||++||+||++++ .++|+|++|+
T Consensus 35 ~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~-~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~ 113 (411)
T PLN02884 35 EQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQ 113 (411)
T ss_pred hhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-HcCCcEEEEEccCHHHHhCCCceeeecCHHHHH
Confidence 3578999999999999999999999999999999999999999875 466668999999999999998 6678999999
Q ss_pred hhhhcCCcccccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCccc
Q 012056 151 DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF 230 (472)
Q Consensus 151 ~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~ 230 (472)
+|+++|||+|||||++.++++++++|++++||+||+|||||||++|.+|++++++++++++||||||||||||++||+||
T Consensus 114 ~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~Ti 193 (411)
T PLN02884 114 NIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTF 193 (411)
T ss_pred HHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCC-cceEecCCCCCCccchhhHHHHHHHHHHh
Q 012056 231 GFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRD-VDCCLIPESPFYLEGEGGLYEFIEKRLKE 309 (472)
Q Consensus 231 GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~-ad~ilIPE~~~~l~~~~~~~~~i~~r~~~ 309 (472)
|||||+|+++++|+++++||.|+++||||||||||+|||||+++|||+ + ||+|||||.||+++++++++++|+++++.
T Consensus 194 GFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~-g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~ 272 (411)
T PLN02884 194 GFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLAS-GQVDICLIPEVPFTLDGPNGVLRHLEHLIET 272 (411)
T ss_pred CHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhc-CCCCEEEeCCCCCCcccHHHHHHHHHHHHhc
Confidence 999999999999999999998866789999999999999999999999 6 99999999999998777999999999998
Q ss_pred CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHH
Q 012056 310 NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNV 389 (472)
Q Consensus 310 ~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~ 389 (472)
+++++||||||+++.+... ...+|++||+++++++.+|+++|+++++ +....+++|+++|||+|||++|+++||+
T Consensus 273 k~~~iIVVAEG~g~~~~~~----~~~~Da~G~~~l~~~~~~La~~i~~~~~-~~g~~~~~r~~~lGy~qRgg~p~a~Dr~ 347 (411)
T PLN02884 273 KGSAVVCVAEGAGQDLLQK----TNATDASGNPVLGDIGVHLQQEIKKHFK-DIGVPADVKYIDPTYMIRACRANASDAI 347 (411)
T ss_pred CCcEEEEEecccccccccc----cccccccCCcccCcHHHHHHHHHHHHhh-ccCCCceEEEccCCccccCCCCCHHHHH
Confidence 8999999999996554432 1248999999999999999999999874 2233457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHHhcCCCCCC
Q 012056 390 YCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFL 453 (472)
Q Consensus 390 ~a~~lG~~AV~~~~~G~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~~t~qp~~~ 453 (472)
+|++||+.||+++++|+||+||++++++++++||+++++.+|+|++++++|+++|++||||+|.
T Consensus 348 la~~lG~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 348 LCTVLGQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411 (411)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCcHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999988899999999999999999999983
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=9.4e-91 Score=718.10 Aligned_cols=350 Identities=26% Similarity=0.440 Sum_probs=315.0
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChh--HH-hhhhhcCCcccccccCCC-
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPK--VV-NDIHKRGGTILGTSRGGH- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~--~v-~~~~~~GGs~LGssR~~~- 167 (472)
+||||+||||||||||++||++++.+...+.+.+|||+++||+||+++++++|+.. ++ +.|+++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999977544456799999999999999999999986 44 459999999999999743
Q ss_pred ----------------ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccC
Q 012056 168 ----------------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG 231 (472)
Q Consensus 168 ----------------~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~G 231 (472)
++++++++|++++||+||+||||||+++|++|++++.+++++|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 2689999999999999999999999999999999999888899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhcc-------------------CCcceEecCCCCCC
Q 012056 232 FDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGS-------------------RDVDCCLIPESPFY 292 (472)
Q Consensus 232 fdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~-------------------~~ad~ilIPE~~~~ 292 (472)
|+||+++++++|+++++||.||+|.++|||||||+|||||+++|||. .+||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 99999999999999999999998766666999999999999999992 38999999999999
Q ss_pred ccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhh---hhcccccCCccccc--hHHHHHHHHHHhhcccceeee
Q 012056 293 LEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQS---MNQQDASGNKLLQD--VGLWISHKIKDHFARLHKMAI 367 (472)
Q Consensus 293 l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~~~~~~---~~~~D~~G~~~l~~--ig~~l~~~I~~~~~~~~~~~~ 367 (472)
++ ++++.|++++++++|++||||||+.+....+...+ ...+|++||.++++ ++.+|+++|+++++.+
T Consensus 244 ~e---~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e----- 315 (403)
T PRK06555 244 LE---AEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE----- 315 (403)
T ss_pred HH---HHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----
Confidence 88 78999999998899999999999976544333211 12489999999987 6889999999988742
Q ss_pred eeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEE---ECCeeeeechhhhhhcCCccCccHHHHHHHH
Q 012056 368 NLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGP---VNGRHAYIPFNRINERQNQVVITDRMWARVL 444 (472)
Q Consensus 368 ~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi---~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l 444 (472)
..++++|||+|||++|+++||++|++||..||+++++|+|| ||++ +||+++++||+++.. +|+++++..+|.++|
T Consensus 316 ~~r~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~~ 393 (403)
T PRK06555 316 KVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTELL 393 (403)
T ss_pred ceEEecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHHH
Confidence 24578999999999999999999999999999999999999 6787 799999999999887 588999999999999
Q ss_pred HhcCCCC
Q 012056 445 SSTNQPS 451 (472)
Q Consensus 445 ~~t~qp~ 451 (472)
.+||||.
T Consensus 394 ~~~~q~~ 400 (403)
T PRK06555 394 DEIGQPY 400 (403)
T ss_pred HhhCCCC
Confidence 9999996
No 6
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-86 Score=683.08 Aligned_cols=332 Identities=28% Similarity=0.426 Sum_probs=300.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeccChhHHhhhhhcCCcccccccC-C-
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRG-G- 166 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~-~- 166 (472)
.+||||+||||||||||++||++++.+.+.++ .+|||+++||+||+++ ++.+|+|.+|++|+++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 46999999999999999999999998864344 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhH
Q 012056 167 -----------HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 235 (472)
Q Consensus 167 -----------~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA 235 (472)
+++++++++|++++||+||+|||||||++|++|++. ..|+||||||||||||++||+|||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 135899999999999999999999999999999863 2678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEE
Q 012056 236 VEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMV 314 (472)
Q Consensus 236 ~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~v 314 (472)
+++++++||+++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ +++++
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~---~l~~~i~~~~~~~~~~~i 232 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLE---NVCKKIRERQEEGKNFCL 232 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEE
Confidence 999999999999999996 679999999999999999999999 899999999999988 799999999987 68999
Q ss_pred EEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHH
Q 012056 315 IVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLL 394 (472)
Q Consensus 315 IvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~l 394 (472)
||||||+.... .+. ..++|++||+++++++++|+++|+++++.+ .|+..|||+|||+.|+++||++|++|
T Consensus 233 ivvsEG~~~~~-g~~---~~~~d~~g~~~~~~~~~~l~~~i~~~~g~~------~r~~~lG~~qRgg~ps~~Dr~~a~~l 302 (360)
T PRK14071 233 VVVSEAVRTEE-GEQ---VTKTQALGEDRYGGIGQYLAEQIAERTGAE------TRVTVLGHIQRGGIPSPRDRLLASAF 302 (360)
T ss_pred EEEcCCCcccc-ccc---ccccccccccccCcHHHHHHHHHHHhcCCC------eeEEecChhhcCCCCChHHHHHHHHH
Confidence 99999986421 111 123799999999999999999999988644 45567999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHH
Q 012056 395 AQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARV 443 (472)
Q Consensus 395 G~~AV~~~~~G~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~ 443 (472)
|..||+++++|+||+||+++++++.++||+++++.+|.+++++.+|+..
T Consensus 303 G~~Av~~~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~~ 351 (360)
T PRK14071 303 GVAAVDLIAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKTA 351 (360)
T ss_pred HHHHHHHHHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHHH
Confidence 9999999999999999999999999999999998889999977777643
No 7
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.7e-86 Score=692.12 Aligned_cols=342 Identities=21% Similarity=0.334 Sum_probs=303.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhh---hhhcCCcccccccCCC
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND---IHKRGGTILGTSRGGH 167 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~---~~~~GGs~LGssR~~~ 167 (472)
.+||||+||||||||||++||++++.+....+..+||||++||+||+++++++|+..+++. |.++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999886532337999999999999999999999887777 8999999999999853
Q ss_pred --------ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHH
Q 012056 168 --------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (472)
Q Consensus 168 --------~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~ 239 (472)
++++++++|++++||+||+|||||||++|++|+++++++|.+++||||||||||||++||+|||||||++++
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 478999999999999999999999999999999999988988999999999999999999999999999999
Q ss_pred HHHHHHH----HHhhhcCcceEEEEEecCCCcchHHHHHhhc-----cCCcceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012056 240 QRAINAA----HVEAESIENGIGVVKLMGRYCGFIAMYATLG-----SRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310 (472)
Q Consensus 240 ~~~i~~i----~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA-----~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 310 (472)
+++|+++ ++++.|| ||||||||||+|||||+++||| + +||+|||||.||+++ .+++.|+++++++
T Consensus 163 ~~ai~~l~~D~~~ta~s~--Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~---~~~~~i~~~~~~~ 236 (416)
T PRK14072 163 ATSVLEAALDVAAMANTS--KVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEE---KFLADVRAIVKRY 236 (416)
T ss_pred HHHHHHHHHHHHhcccCc--eEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHH---HHHHHHHHHHHhC
Confidence 9999999 6666554 7999999999999999999999 7 899999999999987 7999999988888
Q ss_pred CcEEEEEeCCCCcchhHHHHh-hhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCC--CChhh
Q 012056 311 GHMVIVIAEGAGQDLLAESLQ-SMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP--SNASD 387 (472)
Q Consensus 311 ~~~vIvvaEG~~~~~~~~~~~-~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~--p~a~D 387 (472)
+|++||||||+.... .+.+. ....+|++||+++++++++|+++|+++++. .+|+..|||+|||++ |+++|
T Consensus 237 ~~~ivvVaEG~~~~~-g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~~~g~------~~R~~~LG~~QRgg~~~ps~~D 309 (416)
T PRK14072 237 GYCVVVVSEGIRDAD-GKFIAEAGLAEDAFGHAQLGGVAPVLANLIKEKLGK------KVHWAVLDYLQRAARHIASKTD 309 (416)
T ss_pred CCeEEEEecCccccc-ccchhccccccCCCCCcccccHHHHHHHHHHHHhCC------eEEEEeCChhhhCCCCCCCHHH
Confidence 999999999985321 11111 112369999999999999999999999863 356789999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEECC-------eeeeechhhhhhcCCccCc------------cHHHHHHHHH
Q 012056 388 NVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQNQVVI------------TDRMWARVLS 445 (472)
Q Consensus 388 r~~a~~lG~~AV~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~~~~~v~~------------~~~~~~~~l~ 445 (472)
|++|++||..||+++++|+||+||+++++ ++..+||++++++.|++++ +...|.+-|-
T Consensus 310 r~~a~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~~~i~~~~~~v~~~~~~y~~pli 386 (416)
T PRK14072 310 VEEAYAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPPEFINEDGNGITEAFRRYLRPLI 386 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCHHHHhcCCCCcCHHHHHHHHHHh
Confidence 99999999999999999999999999998 8999999999987666653 3456666665
No 8
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=8.4e-86 Score=669.93 Aligned_cols=316 Identities=34% Similarity=0.537 Sum_probs=289.7
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeecc-ChhHHhhhhhcCCcccccccCCC----
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-TPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L-~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
|||||||||||||||++||++++++.+.++ .+|||+++||+||+++++++| +|++++.|.++|||+|||||+.+
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~g-~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcCC-ceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 699999999999999999999998754334 599999999999999999999 99999999999999999999842
Q ss_pred --ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHH
Q 012056 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 168 --~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~ 245 (472)
++++++++|++++||+||+|||||||++|++|++. + ++|||||||||||+++||+|||||||+++++++|++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~----g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADK----G--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhc----C--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999862 3 889999999999999999999999999999999999
Q ss_pred HHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcc
Q 012056 246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQD 324 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~ 324 (472)
+++||.|+ +||||||+|||+|||||+++|||+ +||++||||.||+++ ++++.|++|+++ +++++||||||+...
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~v~~~~~~g~~~~vvvvsEG~~~~ 228 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDID---SVCEKVRERFARGKRFAIVVVAEGAKPK 228 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHH---HHHHHHHHHHHhCCCceEEEEecCcccc
Confidence 99999997 579999999999999999999999 899999999999987 799999999988 789999999999754
Q ss_pred hhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012056 325 LLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 404 (472)
Q Consensus 325 ~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~ 404 (472)
+..... ....+|++||+++++++++|+++|+++++. ..|...|||+|||++|+++||.+|++||.+||+++++
T Consensus 229 ~~~~~~-~~~~~d~~gh~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~ 301 (324)
T TIGR02483 229 GGEMVV-QEGVKDAFGHVRLGGIGNWLAEEIERRTGI------ETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHE 301 (324)
T ss_pred ccchhc-cccccccccCcccCcHHHHHHHHHHHhcCC------cceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 433322 224589999999999999999999998763 3566789999999999999999999999999999999
Q ss_pred CCCceEEEEECCeeeeechhhhh
Q 012056 405 GYTGFTVGPVNGRHAYIPFNRIN 427 (472)
Q Consensus 405 G~tg~mvgi~~~~~~~vPl~~v~ 427 (472)
|+||+||++++++++++||++++
T Consensus 302 g~~~~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 302 GQFGHMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred CCCCeEEEEECCEEEEeeHHHhC
Confidence 99999999999999999999863
No 9
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.1e-85 Score=722.81 Aligned_cols=398 Identities=21% Similarity=0.257 Sum_probs=348.3
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC----------Ccc
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG----------PRQ 83 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~----------~~~ 83 (472)
..+||.+|++.+++++.+++.+.+|++.+.|++++++.|+.|..++. +++| +|+++|.+++ ++.
T Consensus 302 G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~~~ 380 (745)
T TIGR02478 302 GVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIK-EKRFAEAMRLRGREFVENLATFLFLSIPDQDK 380 (745)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHH-hccHHHHHHhcCHHHHHHHHHHHhhhccCCcc
Confidence 47899999999999999999999999999999999999999999974 6775 7999998875 122
Q ss_pred cccc-cCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCccccc
Q 012056 84 KVYF-VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGT 162 (472)
Q Consensus 84 ~~~~-~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGs 162 (472)
...+ ..+++||||+||||||||||++||++++.+.. .+++||||++||+||+++++.+|+|.+|++|+++|||+|||
T Consensus 381 ~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~Lgt 458 (745)
T TIGR02478 381 KLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGT 458 (745)
T ss_pred ccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccccc
Confidence 2222 34458999999999999999999999998753 45799999999999999999999999999999999999999
Q ss_pred ccCC--CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeeccccccccCccCcCcccCchhHHHHH
Q 012056 163 SRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (472)
Q Consensus 163 sR~~--~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~ 239 (472)
+|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||+|++
T Consensus 459 sR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~~ 538 (745)
T TIGR02478 459 NRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEI 538 (745)
T ss_pred CCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHHH
Confidence 9984 4799999999999999999999999999999999885554 467999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEEEE
Q 012056 240 QRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVIVI 317 (472)
Q Consensus 240 ~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vIvv 317 (472)
+++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++.++++++++|++.. .+.+|++
T Consensus 539 ~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~iiv~ 617 (745)
T TIGR02478 539 TEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLILR 617 (745)
T ss_pred HHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 999999999999987899999999999999999999999 8999999999999997666677888888774 6789999
Q ss_pred eCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHH
Q 012056 318 AEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQS 397 (472)
Q Consensus 318 aEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~ 397 (472)
+||+...+. ...|++.|+++.+. .+.+|+.+|||+|||++|+++||++|++||..
T Consensus 618 ~Eg~~~~~~---------------------~~~l~~~i~~e~~~----~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~ 672 (745)
T TIGR02478 618 NENASKNYT---------------------TDFIARIISEEAKG----RFDARTAVLGHMQQGGSPSPFDRNRATRLAIR 672 (745)
T ss_pred eCCCccCCC---------------------HHHHHHHHHHHhcC----CCceEeccCCccccCCCCCHHHHHHHHHHHHH
Confidence 999854332 33577777655331 24578899999999999999999999999999
Q ss_pred HHHHHHcC------------CCceEEEEECCeeeeechhhhhhcCCccC---ccHHHHHHHHH
Q 012056 398 AVHGAVAG------------YTGFTVGPVNGRHAYIPFNRINERQNQVV---ITDRMWARVLS 445 (472)
Q Consensus 398 AV~~~~~G------------~tg~mvgi~~~~~~~vPl~~v~~~~~~v~---~~~~~~~~~l~ 445 (472)
||+++++| ++++||++++++++++||+++......+. |...||..+..
T Consensus 673 Av~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~ 735 (745)
T TIGR02478 673 AVDFIEEKIKKSADKLGADDTSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRP 735 (745)
T ss_pred HHHHHHhCCcccccccccCCCccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHH
Confidence 99999998 79999999999999999998654332222 56678876644
No 10
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=1.5e-84 Score=658.59 Aligned_cols=302 Identities=29% Similarity=0.430 Sum_probs=277.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
+||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|.+++.|+++|||+|||||+++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 4899999999999999999999998853 3 469999999999999999999999999999999999999999842
Q ss_pred -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
++++++++|++++||+||+|||||||++|++|+++ .++||||||||||||++||+|||||||+++++++++++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~------~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc------CCCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~ 325 (472)
+++|+|| +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++++++ +++++||||||+..
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~---~~~~~i~~~~~~g~~~~vivvaEG~~~-- 225 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDRE---EVANRIKAGIERGKKHAIVVVAEGVYD-- 225 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHH---HHHHHHHHHHHcCCCcEEEEEeCCCCC--
Confidence 9999996 589999999999999999999999 899999999999987 799999999887 68999999999842
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
...|++.|+++++.+ .|+..|||+|||++|+++||++|++||.+||+++++|
T Consensus 226 ----------------------~~~l~~~l~~~~g~~------~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g 277 (317)
T cd00763 226 ----------------------VDELAKEIEEATGFE------TRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAG 277 (317)
T ss_pred ----------------------HHHHHHHHHHHhCCC------cceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 124677788877543 4567899999999999999999999999999999999
Q ss_pred CCceEEEEECCeeeeechhhhhhcCCccCcc
Q 012056 406 YTGFTVGPVNGRHAYIPFNRINERQNQVVIT 436 (472)
Q Consensus 406 ~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~ 436 (472)
++|+||+++++++.++||+++++.+|+++++
T Consensus 278 ~~~~mv~~~~~~~~~~pl~~~~~~~k~~~~~ 308 (317)
T cd00763 278 KGGLAVGIQNEQLVHHDIIDAIENMKPFKKD 308 (317)
T ss_pred CCCeEEEEECCEEEEecHHHHhhCCCCCCHH
Confidence 9999999999999999999999888888763
No 11
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=3.1e-84 Score=662.69 Aligned_cols=325 Identities=30% Similarity=0.428 Sum_probs=298.2
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
+||||+||||||||||++||++++++.+ ++ .+||||++||+||+++++++|+|+.+++|+++|||+|||||++.
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~g-~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-EG-LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-CC-CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999998864 44 69999999999999999999999999999999999999999753
Q ss_pred -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
++++++++|++++||+||+||||||+++|.+|++++++++.+++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~ 325 (472)
++||.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+.+.++.+++.|++|+++ +++++||||||+.+..
T Consensus 159 ~~~a~s~-~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vivvsEG~~~~~ 236 (338)
T cd00363 159 RDTASSH-QRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFI 236 (338)
T ss_pred HHhcccC-CCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCCCcccc
Confidence 9999995 689999999999999999999999 799999999999666666899999999887 6899999999996421
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
|++ ....+|+++|+++++. +.|+..|||+|||++|+++||.+|++||..||+++++|
T Consensus 237 --------------~~~---~~~~~l~~~i~~~~~~------~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g 293 (338)
T cd00363 237 --------------PKP---ITEKLLAKLVEERLGF------DTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEG 293 (338)
T ss_pred --------------ccC---chHHHHHHHHHHHcCC------ceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Confidence 221 1256899999998763 45678899999999999999999999999999999999
Q ss_pred CCceEEEEECC---eeeeechhhhhhcCCc--cCccHHHHHHH
Q 012056 406 YTGFTVGPVNG---RHAYIPFNRINERQNQ--VVITDRMWARV 443 (472)
Q Consensus 406 ~tg~mvgi~~~---~~~~vPl~~v~~~~~~--v~~~~~~~~~~ 443 (472)
+||+|++++++ ++.++||+++++.+|+ |++++.+|+.+
T Consensus 294 ~tg~mv~~~~~~~~~~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 294 TGGTPVGIQNLNENQVVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred CCCcEEEEECCccCEEEEecHHHHHhhhcccccCCChHHHHHh
Confidence 99999999999 9999999999999998 68888888754
No 12
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=1.4e-84 Score=715.92 Aligned_cols=393 Identities=21% Similarity=0.238 Sum_probs=340.6
Q ss_pred ccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC--------Ccccc
Q 012056 19 VLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PRQKV 85 (472)
Q Consensus 19 ~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~~~~~ 85 (472)
.++||.+|++.+|++|.+++.+.+|++.+.|++++|+.|+.|+++|. +++| +|+++|.+++ ++...
T Consensus 305 G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~~ 383 (762)
T cd00764 305 GVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMD-EKRFDEAAALRGKSFDKNWNLYKLLAIELPQP 383 (762)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhh-hhhHHHHHHhcchhHHHHHHHHHhccccCCcc
Confidence 48999999999999999999999999999999999999999999985 6776 7999999886 22111
Q ss_pred cccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC
Q 012056 86 YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (472)
Q Consensus 86 ~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~ 165 (472)
....+++||||+||||||||||++||++++++. +.+++||||++||+||+++++++|+|.+|++|+++|||+|||+|+
T Consensus 384 ~~~~~~~~IaIltsGG~apGmNaairavv~~a~--~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~ 461 (762)
T cd00764 384 LPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGL--AHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRT 461 (762)
T ss_pred CCcccccEEEEEecCCCchhHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCC
Confidence 123344899999999999999999999999875 346899999999999999999999999999999999999999998
Q ss_pred C--CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeeccccccccCccCcCcccCchhHHHHHHHH
Q 012056 166 G--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 166 ~--~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~ 242 (472)
. +++++++++|++++||+||+|||||||++|++|++++.++ .+.|+|||||||||||||+||+|||||||+|+++++
T Consensus 462 ~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~~ 541 (762)
T cd00764 462 LPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKY 541 (762)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHHH
Confidence 5 4799999999999999999999999999999999987665 478999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-----CCcEEEEE
Q 012056 243 INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-----NGHMVIVI 317 (472)
Q Consensus 243 i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-----~~~~vIvv 317 (472)
||+++++|+|+++||||||||||+|||||+++|||+ +||+|||||+||+++.+.+.++++.+++++ +.+.++++
T Consensus 542 id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~~ 620 (762)
T cd00764 542 CDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKC 620 (762)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeeee
Confidence 999999999988899999999999999999999999 899999999999999877777777777654 23567889
Q ss_pred eCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHH
Q 012056 318 AEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQS 397 (472)
Q Consensus 318 aEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~ 397 (472)
|||+.... ++..+++++++ .+..|...|||+||||.|+++||++|++||.+
T Consensus 621 se~~~~~~---------------------~~~~~~~~~~~--------~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~ 671 (762)
T cd00764 621 NENYTTVF---------------------TYELYSEEGKG--------VFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVK 671 (762)
T ss_pred ecCCcccc---------------------HHHHHHHHHhc--------CCceEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 99873211 23345555543 24567889999999999999999999999999
Q ss_pred HHHHHHcCC---------------CceEEEEECCeeeeechhhhhhcC-CccCccHHHHHHHH
Q 012056 398 AVHGAVAGY---------------TGFTVGPVNGRHAYIPFNRINERQ-NQVVITDRMWARVL 444 (472)
Q Consensus 398 AV~~~~~G~---------------tg~mvgi~~~~~~~vPl~~v~~~~-~~v~~~~~~~~~~l 444 (472)
||+++.+.. +..++|+++.++++.|+.++.... ..-.|...+|..+.
T Consensus 672 Av~~l~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~ 734 (762)
T cd00764 672 AMKWIEQKLKENYAAGNEFANDPDFNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLR 734 (762)
T ss_pred HHHHHHHhhhhhhcccccccCCCCceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHH
Confidence 999998853 889999999999999998887632 11115566776543
No 13
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=5.7e-84 Score=649.94 Aligned_cols=295 Identities=31% Similarity=0.463 Sum_probs=270.6
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-----C
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-----H 167 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-----~ 167 (472)
||||+||||||||||++||++++.+.+ + +.+|||+++||+||+++++++|+|+++++|+++|||+|||||+. +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 699999999999999999999998864 4 46999999999999999999999999999999999999999984 2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
++++++++|++++||+||+|||||||++|++|+++ ++++|||||||||||+++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999986 3688999999999999999999999999999999999999
Q ss_pred HhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcchh
Q 012056 248 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDLL 326 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~~ 326 (472)
++|.|| +||||||+|||+|||||+++|||+ +||+|||||.||+++ +++++|++|+++ +++++||||||+..
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~---~l~~~i~~r~~~g~~~~iIvvaEG~~~--- 225 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDID---ELIQRLKEQHEAGKKHSIIIVAEGNIV--- 225 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHH---HHHHHHHHHHHcCCCeEEEEEeCCCcC---
Confidence 999997 579999999999999999999999 899999999999987 799999999987 68999999999531
Q ss_pred HHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC
Q 012056 327 AESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 406 (472)
Q Consensus 327 ~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~ 406 (472)
+.+..|+++|+++++. ++|+..|||+|||++|+++||++|++||.+||+++++|+
T Consensus 226 -------------------~~~~~l~~~l~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~ 280 (301)
T TIGR02482 226 -------------------GSAKEVAKKIEEATGI------ETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGK 280 (301)
T ss_pred -------------------CcHHHHHHHHHHhcCC------eeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 0023578888776653 456788999999999999999999999999999999999
Q ss_pred CceEEEEECCeeeeechhhhh
Q 012056 407 TGFTVGPVNGRHAYIPFNRIN 427 (472)
Q Consensus 407 tg~mvgi~~~~~~~vPl~~v~ 427 (472)
+|+||++++++++++||++++
T Consensus 281 ~~~mv~~~~~~~~~~p~~~~~ 301 (301)
T TIGR02482 281 GGVMIGIQNNKIVTHPIEEAL 301 (301)
T ss_pred CCEEEEEECCEEEEeeHHHhC
Confidence 999999999999999999863
No 14
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=5.6e-83 Score=647.96 Aligned_cols=302 Identities=31% Similarity=0.460 Sum_probs=278.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
+||||+||||||||||++||++++++.. .+++|||+++||+||+++++++|+|+++++|.++|||+|||||+..
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS--EGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH--CCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 5899999999999999999999998864 3569999999999999999999999999999999999999999742
Q ss_pred -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
++++++++|++++||+||+|||||||++|++|+++ +++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999863 68899999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~ 325 (472)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++ ++++.|++|+++ +++++||||||+.+
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~---~l~~~i~~r~~~g~~~~vivvsEg~~~-- 226 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIE---ELCAKIKKGRERGKKHAIIVVAEGVMP-- 226 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHH---HHHHHHHHHHHhcCCcEEEEEeCCCCC--
Confidence 9999997 579999999999999999999999 899999999999987 799999999987 78999999999854
Q ss_pred hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056 326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 405 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G 405 (472)
...|++.|+++++. ++|+.+|||+|||++|+++||.+|++||.+||+++++|
T Consensus 227 ----------------------~~~l~~~i~~~~~~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g 278 (320)
T PRK03202 227 ----------------------AEELAKEIEERTGL------ETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEG 278 (320)
T ss_pred ----------------------HHHHHHHHHHHhCC------ceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 11378888888763 45788999999999999999999999999999999999
Q ss_pred CCceEEEEECCeeeeechhhhh-hcCCccCcc
Q 012056 406 YTGFTVGPVNGRHAYIPFNRIN-ERQNQVVIT 436 (472)
Q Consensus 406 ~tg~mvgi~~~~~~~vPl~~v~-~~~~~v~~~ 436 (472)
++|+||+++++++.++||++++ +++|.++++
T Consensus 279 ~~~~~v~~~~~~~~~vpl~~v~~~~~~~~~~~ 310 (320)
T PRK03202 279 KGGRMVGIQNNKIVHVPIEEAVENMKHPFDKD 310 (320)
T ss_pred CCCeEEEEECCEEEEEeHHHHHhcCCCCCCHH
Confidence 9999999999999999999999 666666653
No 15
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-80 Score=628.39 Aligned_cols=310 Identities=34% Similarity=0.470 Sum_probs=271.4
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC---
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH--- 167 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~--- 167 (472)
.+||||+|||||||||||+||++|+++.. .+.+||||++||+||+++++++|+++++++|+++|||+|||+|+++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~--~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK--EGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH--cCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 46999999999999999999999999864 3689999999999999999999999999999999999999999853
Q ss_pred --ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHH
Q 012056 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 168 --~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~ 245 (472)
..++++++|++++||+|++||||||+++|+.|+|+. .++|||||||||||+++||+|||||||+++++++||+
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999873 3789999999999999999999999999999999999
Q ss_pred HHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHH--hCCcEEEEEeCCCCc
Q 012056 246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLK--ENGHMVIVIAEGAGQ 323 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~--~~~~~vIvvaEG~~~ 323 (472)
++++++|| +|+||||||||+|||||++||||+ +||+|+|||.+|++ .+.+++..++++.+ .++|++||++||+.+
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~-~i~~~~~~i~~~~~~~gk~~~iIvvaEG~~~ 231 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADL-IIEELIAEIKAKREARGKKHAIIVVAEGAID 231 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccc-hHHHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 99888886 689999999999999999999999 79999999999987 23367777776444 357899999999975
Q ss_pred chhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHH
Q 012056 324 DLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAV 403 (472)
Q Consensus 324 ~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~ 403 (472)
.+. .+|+.. ...+++++... ..++|...|||+|||+.|+++||+||++||..||++++
T Consensus 232 ~~~-----------~~~~~~--------~~~i~~~~~~~---~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~ 289 (347)
T COG0205 232 QIG-----------ENGAEL--------LAAIEELLALG---DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLL 289 (347)
T ss_pred ccc-----------cchhhH--------HHHHHHHhhhc---ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 322 134433 33344443311 13567778999999999999999999999999999999
Q ss_pred cCCCceEEEEECCeeeeechhhhhhcCCc
Q 012056 404 AGYTGFTVGPVNGRHAYIPFNRINERQNQ 432 (472)
Q Consensus 404 ~G~tg~mvgi~~~~~~~vPl~~v~~~~~~ 432 (472)
+|++++||+++|+++++.|+.+.....+.
T Consensus 290 ~g~~~~~v~i~~~~~v~~~~~~~~~~~~~ 318 (347)
T COG0205 290 EGKTGYMVGIRNNKIVHVPIDEAVAPLKM 318 (347)
T ss_pred cCCCCceEEEeCCeeEeehhHhhhhhhhh
Confidence 99999999999999999999987775544
No 16
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=2.9e-79 Score=673.73 Aligned_cols=342 Identities=22% Similarity=0.312 Sum_probs=294.4
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeccChhHHhhhhhcCCcccccccCCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (472)
+++||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+.+
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~--~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 35799999999999999999999999875 3467999999999999998 7899999999999999999999999853
Q ss_pred -----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHH-----------------HHHHHcCCCceeeccccccccCccC
Q 012056 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY-----------------EEIRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~-----------------~~~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
++++++++|++++||+||+||||||+++|++|. ++..+++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 468999999999999999999999999999764 2333345678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHH
Q 012056 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEK 305 (472)
Q Consensus 226 td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~ 305 (472)
||+|||||||+++++++||++++||.|| +|+||||||||+|||||+++|||+ +||+|||||.||+.+.++++++.+++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh-~R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSH-QRTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999998 479999999999999999999999 89999999999993333456666665
Q ss_pred HHHh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCC
Q 012056 306 RLKE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSN 384 (472)
Q Consensus 306 r~~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~ 384 (472)
+.+. +++++||||||+. |..|++.. +.+|++.|+++++.+ +|...|||+|||++|+
T Consensus 238 ~~~~gk~~~iIVVaEGa~--------------d~~g~~i~---~~~l~~~l~~~~g~d------~R~t~LGh~QRGG~Ps 294 (762)
T cd00764 238 HRSRGKRLNIIIVAEGAI--------------DDQLKPIT---SEDVKDLVVERLGLD------TRVTTLGHVQRGGTPS 294 (762)
T ss_pred HHhcCCCcEEEEEeCCCc--------------cccCCCcc---HHHHHHHHHHhcCCC------eeEeecChhhcCCCCC
Confidence 5544 4789999999984 23344332 347888888887644 4567899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeeeeechhhhhhcCCccC--ccHHHHHHHHHhcCCCCCCChHHHH
Q 012056 385 ASDNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANELA 459 (472)
Q Consensus 385 a~Dr~~a~~lG~~AV~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~~~v~--~~~~~~~~~l~~t~qp~~~~~~~~~ 459 (472)
++||++|++||..||+++++|++ ++||++++|+++++||.+++..+|.|. .+...|.+.++. .-++|.++.+..
T Consensus 295 a~Dr~la~~~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~l-r~~~f~~~~~~~ 373 (762)
T cd00764 295 AFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAAL-RGKSFDKNWNLY 373 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHh-cchhHHHHHHHH
Confidence 99999999999999999999986 899999999999999999999999885 456677777665 445777665544
No 17
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=4.6e-79 Score=674.74 Aligned_cols=340 Identities=24% Similarity=0.331 Sum_probs=298.0
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeccChhHHhhhhhcCCcccccccCCC--
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH-- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~-- 167 (472)
+||||+||||||||||++||++++.+.+ .+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+.+
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~--~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY--VGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999998753 357999999999999999 9999999999999999999999999853
Q ss_pred ---ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHH-----------------HHHHcCCCceeeccccccccCccCcC
Q 012056 168 ---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-----------------EIRQRGLKVAVAGIPKTIDNDIPVID 227 (472)
Q Consensus 168 ---~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~-----------------~~~~~~~~i~vvgIPkTIDNDi~gtd 227 (472)
++++++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 3579999999999999999999999999997765 23344567899999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHH
Q 012056 228 KSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRL 307 (472)
Q Consensus 228 ~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~ 307 (472)
+|||||||+++++++||++++||.|| +|+||||||||+|||||+++|||+ +||+|||||.||+.+.++++++.++++.
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999997 579999999999999999999999 8999999999999665557777777654
Q ss_pred Hh-CCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChh
Q 012056 308 KE-NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNAS 386 (472)
Q Consensus 308 ~~-~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~ 386 (472)
+. +++++||||||+. |+.||+.. ..+|++.|+++++.+ .|...|||+|||++|+++
T Consensus 237 ~~gk~~~iIvvaEG~~--------------d~~g~~i~---~~~l~~~l~~~~g~~------~R~~~LGh~QRgg~Psa~ 293 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAI--------------DRDLNPIT---SEDVKDVLVERLGLD------TRITVLGHVQRGGAPSAY 293 (745)
T ss_pred HcCCCcEEEEEeCCcc--------------cccCCccc---HHHHHHHHHHhcCCc------eEEeecChhhcCCCCCHH
Confidence 44 5789999999984 34455432 357888888877643 456789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCC---ceEEEEECCeeeeechhhhhhcCCccCcc--HHHHHHHHHhcCCCCCCChHHHH
Q 012056 387 DNVYCTLLAQSAVHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVIT--DRMWARVLSSTNQPSFLSANELA 459 (472)
Q Consensus 387 Dr~~a~~lG~~AV~~~~~G~t---g~mvgi~~~~~~~vPl~~v~~~~~~v~~~--~~~~~~~l~~t~qp~~~~~~~~~ 459 (472)
||++|++||..||+++++|++ ++||+++++++.++||+++++.+|.++.+ ...|...++. .-++|.++.+..
T Consensus 294 Dr~la~~~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~-r~~~f~~~~~~~ 370 (745)
T TIGR02478 294 DRILATRQGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRL-RGREFVENLATF 370 (745)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHh-cCHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999854 4567777665 556787765555
No 18
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=4.3e-77 Score=638.04 Aligned_cols=341 Identities=26% Similarity=0.372 Sum_probs=295.3
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccCCC
Q 012056 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGGH 167 (472)
Q Consensus 89 ~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~~ 167 (472)
++.+||||++|||||||||++|+++++++...+.+.+||||++||+||+++++++|+++.|+.|+++||+ +|||||+..
T Consensus 65 ~~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~ 144 (539)
T TIGR02477 65 HQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKI 144 (539)
T ss_pred ccceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCC
Confidence 4558999999999999999999999998876667889999999999999999999999999999999996 999999853
Q ss_pred ----ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCcc--CcCcccCchhHHHHHHH
Q 012056 168 ----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQR 241 (472)
Q Consensus 168 ----~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--gtd~S~GfdTA~~~~~~ 241 (472)
++++++++|++++||+||+||||||+++|.+|++++.+++++|+|||||||||||++ +||+|||||||++++++
T Consensus 145 ~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~ 224 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSE 224 (539)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999998 59999999999999999
Q ss_pred HHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCC----Cccc-hhhHHHHHHHHHHh-CCcEEE
Q 012056 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEG-EGGLYEFIEKRLKE-NGHMVI 315 (472)
Q Consensus 242 ~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~----~l~~-~~~~~~~i~~r~~~-~~~~vI 315 (472)
+|+++..++.|++++|||||||||+|||||++||||+ +||+|||||+++ ++++ .+.+++.|.+|..+ ++|++|
T Consensus 225 ~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvI 303 (539)
T TIGR02477 225 LIGNICRDALSAKKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVI 303 (539)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9999988888888899999999999999999999999 899999999987 5443 34566677777765 589999
Q ss_pred EEeCCCCcc--------------------------hhHHHHhhh-----------------hcccccCCccccch--HHH
Q 012056 316 VIAEGAGQD--------------------------LLAESLQSM-----------------NQQDASGNKLLQDV--GLW 350 (472)
Q Consensus 316 vvaEG~~~~--------------------------~~~~~~~~~-----------------~~~D~~G~~~l~~i--g~~ 350 (472)
|||||+.+. ++.+.++.. ..+|++||++++++ ++.
T Consensus 304 vvsEGlie~ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~l 383 (539)
T TIGR02477 304 LIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKL 383 (539)
T ss_pred EEeCCchhhcchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHH
Confidence 999998541 110000000 24799999999998 788
Q ss_pred HHHHHHHhhcccce-eeeeeeee----CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC--e-----e
Q 012056 351 ISHKIKDHFARLHK-MAINLKYI----DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG--R-----H 418 (472)
Q Consensus 351 l~~~I~~~~~~~~~-~~~~l~~i----~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~--~-----~ 418 (472)
|++++++++..... .....++. .+||.|||+.||.+|+.||+.||..|++++++|.||+|++++|- . +
T Consensus 384 L~~lV~~~l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~ 463 (539)
T TIGR02477 384 LIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIA 463 (539)
T ss_pred HHHHHHHHHHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeE
Confidence 88888887763211 12345566 57999999999999999999999999999999999999999982 1 3
Q ss_pred eeechhhhhhcC
Q 012056 419 AYIPFNRINERQ 430 (472)
Q Consensus 419 ~~vPl~~v~~~~ 430 (472)
..+|+..+++..
T Consensus 464 ~~vPl~~~~n~e 475 (539)
T TIGR02477 464 GGVPLTMMMNME 475 (539)
T ss_pred ecccHHHHhChh
Confidence 679999988743
No 19
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=2.3e-76 Score=633.70 Aligned_cols=350 Identities=25% Similarity=0.376 Sum_probs=298.2
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccCC---
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG--- 166 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~--- 166 (472)
.+||||++|||||||||++|+++++++...+.+.+||||++||+||+++++++|+|+.|+.|+++||+ +|||+|+.
T Consensus 70 ~~~IgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~ 149 (555)
T PRK07085 70 PLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIET 149 (555)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCC
Confidence 57999999999999999999999987766667889999999999999999999999999999999998 99999985
Q ss_pred -CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchhHHHHHHHHH
Q 012056 167 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAI 243 (472)
Q Consensus 167 -~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdTA~~~~~~~i 243 (472)
+++++++++|++++||+||+||||||+++|.+|++++++++.+|+|||||||||||++++ |+|||||||+++++++|
T Consensus 150 ~e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I 229 (555)
T PRK07085 150 EEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMI 229 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999989999999999999999955 99999999999999999
Q ss_pred HHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCC----CCCccc-hhhHHHHHHHHHHh-CCcEEEEE
Q 012056 244 NAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES----PFYLEG-EGGLYEFIEKRLKE-NGHMVIVI 317 (472)
Q Consensus 244 ~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~----~~~l~~-~~~~~~~i~~r~~~-~~~~vIvv 317 (472)
+++..+|.|+++||||||+|||+|||||+++|||+ +||+|||||+ ++++++ .+.+++.|.+|..+ ++|++|||
T Consensus 230 ~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvv 308 (555)
T PRK07085 230 GNISRDALSAKKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILI 308 (555)
T ss_pred HHHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 99988888888899999999999999999999999 8999999999 555553 23344455566544 58999999
Q ss_pred eCCCCcchh------HH--------------------------HHhh-----------------hhcccccCCccccch-
Q 012056 318 AEGAGQDLL------AE--------------------------SLQS-----------------MNQQDASGNKLLQDV- 347 (472)
Q Consensus 318 aEG~~~~~~------~~--------------------------~~~~-----------------~~~~D~~G~~~l~~i- 347 (472)
|||+.+... .| .++. ...+|++||++++++
T Consensus 309 sEGlie~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~ 388 (555)
T PRK07085 309 PEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIE 388 (555)
T ss_pred eCCchhcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeecccc
Confidence 999864110 00 0100 014799999999998
Q ss_pred -HHHHHHHHHHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-e---
Q 012056 348 -GLWISHKIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-R--- 417 (472)
Q Consensus 348 -g~~l~~~I~~~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~-~--- 417 (472)
++.|+++|+++++.... ..+..+...+||.|||+.||.+|+.||+.||..|++++++|+||+|++++|- .
T Consensus 389 te~lL~~lV~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~ 468 (555)
T PRK07085 389 TEKLLIEMVKKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYT 468 (555)
T ss_pred HHHHHHHHHHHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcc
Confidence 88999999888764211 1244455679999999999999999999999999999999999999999982 2
Q ss_pred ---eeeechhhhhhcC------------CccCccHHHHH
Q 012056 418 ---HAYIPFNRINERQ------------NQVVITDRMWA 441 (472)
Q Consensus 418 ---~~~vPl~~v~~~~------------~~v~~~~~~~~ 441 (472)
+..+||..+++.. +.||.++..++
T Consensus 469 ~w~~~~vPl~~~~n~e~~~g~~~p~i~~~~Vdl~~~~f~ 507 (555)
T PRK07085 469 EWIAGAVPLTMMMNMERRHGKEKPVIKKALVDLDGPPFK 507 (555)
T ss_pred eeeEecccHHHHhcHHhhCCCCCceeeeeeeCCCCHHHH
Confidence 3679999988743 34666665555
No 20
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=1.8e-75 Score=624.77 Aligned_cols=343 Identities=25% Similarity=0.343 Sum_probs=296.3
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccCC-
Q 012056 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG- 166 (472)
Q Consensus 89 ~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~- 166 (472)
+..+||||++|||||||||++|+++++.+...+.+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++
T Consensus 70 ~~~~~IgIl~SGG~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~ 149 (550)
T cd00765 70 APKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKI 149 (550)
T ss_pred CCCCEEEEECCCCCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCC
Confidence 4558999999999999999999999998876566789999999999999999999999999999999999 99999984
Q ss_pred ---CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCchhHHHHHHH
Q 012056 167 ---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQR 241 (472)
Q Consensus 167 ---~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~GfdTA~~~~~~ 241 (472)
+++++++++|++++||+||+||||||+++|.+|++++.+++++|+|||||||||||+++| |+|||||||++++++
T Consensus 150 ~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~ 229 (550)
T cd00765 150 ETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSE 229 (550)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred HHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCC----Cccc-hhhHHHHHHHHHHh-CCcEEE
Q 012056 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEG-EGGLYEFIEKRLKE-NGHMVI 315 (472)
Q Consensus 242 ~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~----~l~~-~~~~~~~i~~r~~~-~~~~vI 315 (472)
+|++++.+|.|+++||+|||||||+|||||+++|||+ +||+|||||++| ++++ .+.+++.|++|..+ ++|++|
T Consensus 230 ~I~ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvI 308 (550)
T cd00765 230 LIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVV 308 (550)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999998888899999999999999999999999 899999999999 4332 12345555666554 578999
Q ss_pred EEeCCCCcchhH------------------------------------------------HHHhh--hhcccccCCcccc
Q 012056 316 VIAEGAGQDLLA------------------------------------------------ESLQS--MNQQDASGNKLLQ 345 (472)
Q Consensus 316 vvaEG~~~~~~~------------------------------------------------~~~~~--~~~~D~~G~~~l~ 345 (472)
||+||+.+.... +++.. ...+|++||++++
T Consensus 309 vVsEGlie~ipe~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls 388 (550)
T cd00765 309 LVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVS 388 (550)
T ss_pred EEeCCchhhCchHHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeec
Confidence 999998751100 11111 1248999999999
Q ss_pred ch--HHHHHHHHHHhhccc-ce----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC--
Q 012056 346 DV--GLWISHKIKDHFARL-HK----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-- 416 (472)
Q Consensus 346 ~i--g~~l~~~I~~~~~~~-~~----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~-- 416 (472)
++ ++.|+++++++++.. .+ ..+......+||.|||+.||.+|+.||+.||..|++++.+|.||+|++++|-
T Consensus 389 ~iete~lL~~lV~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~ 468 (550)
T cd00765 389 RIETEKLLIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAA 468 (550)
T ss_pred cchHHHHHHHHHHHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCC
Confidence 99 999999999887642 11 1133335568999999999999999999999999999999999999999972
Q ss_pred -----eeeeechhhhhhcCCc
Q 012056 417 -----RHAYIPFNRINERQNQ 432 (472)
Q Consensus 417 -----~~~~vPl~~v~~~~~~ 432 (472)
++..+||..+++.+|+
T Consensus 469 ~~~~w~~~~vPl~~~mn~e~~ 489 (550)
T cd00765 469 PVEEWTVGGVPLTMLMNMERR 489 (550)
T ss_pred CceEEEEecccHHHHhccccc
Confidence 2457999999885543
No 21
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=9.5e-75 Score=624.67 Aligned_cols=357 Identities=22% Similarity=0.326 Sum_probs=304.9
Q ss_pred Ccccccc---cCCcccccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhH
Q 012056 72 RGTHFRR---AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV 148 (472)
Q Consensus 72 ~~~~f~~---~~~~~~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~ 148 (472)
+...|.. ++|+.+.++.+..+|||||||||||||||+||+++++.+...+.+.+||||++||+||+++++++|+++.
T Consensus 57 p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~ 136 (610)
T PLN03028 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDV 136 (610)
T ss_pred cceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHH
Confidence 4455654 4578888887888999999999999999999999999887666678999999999999999999999999
Q ss_pred HhhhhhcCCc-ccccccCC----CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCc
Q 012056 149 VNDIHKRGGT-ILGTSRGG----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (472)
Q Consensus 149 v~~~~~~GGs-~LGssR~~----~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (472)
++.|+++||+ +|||+|.+ +++++++++|++++||+||+||||||+++|.+|++++++++.+|+|||||||||||+
T Consensus 137 v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 137 LSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred HHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCC
Confidence 9999999998 89999964 358999999999999999999999999999999999999988999999999999999
Q ss_pred c--CcCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCC-CCc---cc-h
Q 012056 224 P--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP-FYL---EG-E 296 (472)
Q Consensus 224 ~--gtd~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~-~~l---~~-~ 296 (472)
+ +||+|||||||+++++++|+++++||.|+++||||||+|||+|||||+++|||+ +||+|||||+. ++. .+ .
T Consensus 217 ~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv 295 (610)
T PLN03028 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDIT 295 (610)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHH
Confidence 8 799999999999999999999999999998899999999999999999999999 89999999974 322 22 2
Q ss_pred hhHHHHHHHHHHh-CCcEEEEEeCCCCcchh------HHH---H---------h---------------------hhhcc
Q 012056 297 GGLYEFIEKRLKE-NGHMVIVIAEGAGQDLL------AES---L---------Q---------------------SMNQQ 336 (472)
Q Consensus 297 ~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~~------~~~---~---------~---------------------~~~~~ 336 (472)
+.+++.|++|+++ ++|+||||+||+.+... .|. + . -...+
T Consensus 296 ~~i~~~I~~r~~~gk~~gvIvVsEGlie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~ 375 (610)
T PLN03028 296 KQICDAVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHP 375 (610)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhcc
Confidence 4788888888854 68999999999874311 000 0 0 01247
Q ss_pred cccCCccccc--hHHHHHHHHHHhhccccee------eeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCc
Q 012056 337 DASGNKLLQD--VGLWISHKIKDHFARLHKM------AINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG 408 (472)
Q Consensus 337 D~~G~~~l~~--ig~~l~~~I~~~~~~~~~~------~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg 408 (472)
|++||+++++ .+++|+++++++++.+.+. .+....-.+||.|||+.|+.+|+.||+.||..|++++.+|.||
T Consensus 376 D~~G~~qls~i~te~lL~~lV~~eL~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG 455 (610)
T PLN03028 376 ESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNG 455 (610)
T ss_pred CCCCCeeecchhHHHHHHHHHHHHHHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998 5678888888877643321 1222223689999999999999999999999999999999999
Q ss_pred eEEEEECC-------eeeeechhhhhhc
Q 012056 409 FTVGPVNG-------RHAYIPFNRINER 429 (472)
Q Consensus 409 ~mvgi~~~-------~~~~vPl~~v~~~ 429 (472)
+|++++|- ++..+||..+++.
T Consensus 456 ~M~~I~nl~~~~~~w~~~~vPl~~~m~~ 483 (610)
T PLN03028 456 YMATVTNLKSPVNKWRCGAAPITAMMSV 483 (610)
T ss_pred eEEEEEeCCCCCeEEEEcccCHHHHhhH
Confidence 99999972 1456999998763
No 22
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=2.5e-75 Score=583.66 Aligned_cols=275 Identities=36% Similarity=0.552 Sum_probs=241.7
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (472)
+||||+||||||||||++|+++++++.+ .+.+|||+++||+||+++++++|+|+++++|.++|||+|||+|+++
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 5999999999999999999999998753 4579999999999999999999999999999999999999999852
Q ss_pred -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
++++++++|++++||+||+|||||||++|++|++++. ++|||||||||||+|+||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 3568999999999999999999999999999997653 8899999999999999999999999999999999999
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC-CcEEEEEeCCCCcch
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAEGAGQDL 325 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~-~~~vIvvaEG~~~~~ 325 (472)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.|++++ .+++.|+++++++ ++++||||||+...
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~---~~~~~i~~~~~~~k~~~iVvvsEG~~~~- 227 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLD---ELLDDIKKRYERGKRYGIVVVSEGAKDG- 227 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHH---HHHHHHHHHHHTTSSEEEEEEETTSBSS-
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchH---HHHHHhhhhhcccCceEEEEeccccccc-
Confidence 9999986 679999999999999999999999 899999999998777 7999999988764 68899999999641
Q ss_pred hHHHHhhhhcccccCCccccch-HHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012056 326 LAESLQSMNQQDASGNKLLQDV-GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 404 (472)
Q Consensus 326 ~~~~~~~~~~~D~~G~~~l~~i-g~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~ 404 (472)
.++ .+.+++..++.++ +.+|+..|||+|||++|+++||++|++||.+||+++++
T Consensus 228 -------------------~~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 228 -------------------QPISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp -------------------HBHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------ccccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 011 1234444444333 45778889999999999999999999999999999864
No 23
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=1.8e-73 Score=610.71 Aligned_cols=341 Identities=24% Similarity=0.307 Sum_probs=292.6
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccCC-
Q 012056 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG- 166 (472)
Q Consensus 89 ~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~- 166 (472)
+..+|||||+|||||||||+||+++++++.....+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++
T Consensus 94 ~~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~ 173 (568)
T PLN02251 94 DQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKI 173 (568)
T ss_pred cccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCc
Confidence 3447999999999999999999999998866556789999999999999999999999999999999999 99999984
Q ss_pred ---CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC--cccCchhHHHHHHH
Q 012056 167 ---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQR 241 (472)
Q Consensus 167 ---~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd--~S~GfdTA~~~~~~ 241 (472)
+++++++++|++++||+||+||||||+++|..|++++++.+.+|+|||||||||||+++|| +|||||||++++++
T Consensus 174 ~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~ 253 (568)
T PLN02251 174 ETPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSE 253 (568)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred HHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCC----Cccch-hhHHHHHHHHHHh-CCcEEE
Q 012056 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEGE-GGLYEFIEKRLKE-NGHMVI 315 (472)
Q Consensus 242 ~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~----~l~~~-~~~~~~i~~r~~~-~~~~vI 315 (472)
+|++++.||.|++++++|||+|||+|||||+++|||+ +||+|||||+++ +++++ +.+++.|++|... ++|++|
T Consensus 254 ~I~ni~~da~S~~k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvI 332 (568)
T PLN02251 254 MIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVI 332 (568)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999998888999999999999999999999 899999999955 44322 2345566666654 589999
Q ss_pred EEeCCCCcch------hHH---------------------------------HHh--hhhcccccCCccccc--hHHHHH
Q 012056 316 VIAEGAGQDL------LAE---------------------------------SLQ--SMNQQDASGNKLLQD--VGLWIS 352 (472)
Q Consensus 316 vvaEG~~~~~------~~~---------------------------------~~~--~~~~~D~~G~~~l~~--ig~~l~ 352 (472)
||+||+.+.. +.+ ++. ....+|++||+++++ .++.|+
T Consensus 333 lVsEGlie~ipe~~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~ 412 (568)
T PLN02251 333 LIPEGLIDFIPEVQHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLI 412 (568)
T ss_pred EEeCCchhhCchHHHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHH
Confidence 9999983110 100 000 012479999999998 678899
Q ss_pred HHHHHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------eee
Q 012056 353 HKIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAY 420 (472)
Q Consensus 353 ~~I~~~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~~-------~~~ 420 (472)
++++++++.+.. ..+..+...+||.|||+.||.+|+.||+.||..|++++.+|+||+|++++|.. +..
T Consensus 413 ~lV~~~L~~rk~~~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~ 492 (568)
T PLN02251 413 QMVETELEKRKQEGSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGG 492 (568)
T ss_pred HHHHHHHhhhccccccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcC
Confidence 999888764211 12334556799999999999999999999999999999999999999999831 356
Q ss_pred echhhhhhcC
Q 012056 421 IPFNRINERQ 430 (472)
Q Consensus 421 vPl~~v~~~~ 430 (472)
+||..+++.+
T Consensus 493 vpl~~~mn~e 502 (568)
T PLN02251 493 TALTSLMDVE 502 (568)
T ss_pred ccHHHHhhhh
Confidence 9999988743
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=5.5e-71 Score=622.06 Aligned_cols=338 Identities=25% Similarity=0.322 Sum_probs=289.2
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccCC---
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG--- 166 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~--- 166 (472)
.+|||||||||||||||+||+++++.+...+.+.+||||++||+||+++++++|+++.|+.|+++||| +|||+|++
T Consensus 102 ~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ 181 (1328)
T PTZ00468 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIET 181 (1328)
T ss_pred CCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCC
Confidence 37999999999999999999999998764456779999999999999999999999999999999997 99999985
Q ss_pred -CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC--cCcccCchhHHHHHHHHH
Q 012056 167 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQRAI 243 (472)
Q Consensus 167 -~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g--td~S~GfdTA~~~~~~~i 243 (472)
+++++++++|++++||+||+||||||+++|.+|++++.+++.+++|||||||||||+++ ||+|||||||+++++++|
T Consensus 182 ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I 261 (1328)
T PTZ00468 182 EEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQI 261 (1328)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999985 899999999999999999
Q ss_pred HHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccc-----hhhHHHHHHHHHHh-CCcEEEEE
Q 012056 244 NAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG-----EGGLYEFIEKRLKE-NGHMVIVI 317 (472)
Q Consensus 244 ~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~-----~~~~~~~i~~r~~~-~~~~vIvv 317 (472)
++++++|.|+++||||||+|||+|||||+++|||+ +||+|||||++++-+. .+.+++.|.+|.+. ++|++|||
T Consensus 262 ~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvV 340 (1328)
T PTZ00468 262 GSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLL 340 (1328)
T ss_pred HHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999977899999999999999999999999 8999999999987321 22345555666544 57999999
Q ss_pred eCCCCcch----------------------hH---------------HHHhh--hhcccccCCccccchH--HHHHHHHH
Q 012056 318 AEGAGQDL----------------------LA---------------ESLQS--MNQQDASGNKLLQDVG--LWISHKIK 356 (472)
Q Consensus 318 aEG~~~~~----------------------~~---------------~~~~~--~~~~D~~G~~~l~~ig--~~l~~~I~ 356 (472)
+||+.+.. +. +++.. ...+|++||+++++++ +.|+++++
T Consensus 341 sEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~ 420 (1328)
T PTZ00468 341 PEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAK 420 (1328)
T ss_pred cCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHH
Confidence 99986211 00 00000 1248999999999988 88999888
Q ss_pred Hhhccccee--eeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------eeeechhhhh
Q 012056 357 DHFARLHKM--AINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAYIPFNRIN 427 (472)
Q Consensus 357 ~~~~~~~~~--~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~~-------~~~vPl~~v~ 427 (472)
+++...... .+.+++=.+||.|||+.|+.+|+.||+.||..|++++.+|+||+|++++|.+ +..+||..++
T Consensus 421 ~~L~~~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mm 500 (1328)
T PTZ00468 421 EKLEEVKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMM 500 (1328)
T ss_pred HHHHHhhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHh
Confidence 877422111 1122223589999999999999999999999999999999999999999843 4569999987
Q ss_pred hc
Q 012056 428 ER 429 (472)
Q Consensus 428 ~~ 429 (472)
+.
T Consensus 501 n~ 502 (1328)
T PTZ00468 501 NI 502 (1328)
T ss_pred hH
Confidence 73
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=3.2e-70 Score=619.63 Aligned_cols=338 Identities=29% Similarity=0.375 Sum_probs=286.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccCC--
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG-- 166 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~-- 166 (472)
+++||||++|||||||||++|+++++.+.....+++||||++||+||+++++++|+|.++++|+++||| +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 347999999999999999999999998865456789999999999999999999999999999999997 89999974
Q ss_pred --CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCcc--CcCcccCchhHHHHHHHH
Q 012056 167 --HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 167 --~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--gtd~S~GfdTA~~~~~~~ 242 (472)
+++++++++|++++||+||+||||||+++|.+|++++.+.+++++|||||||||||++ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCC----Cccchh-hHHHHHHHHHHh-CCcEEEE
Q 012056 243 INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEGEG-GLYEFIEKRLKE-NGHMVIV 316 (472)
Q Consensus 243 i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~----~l~~~~-~~~~~i~~r~~~-~~~~vIv 316 (472)
|+++++++.++++++||||||||+|||||+++|||+ +||+|||||++| +++++. .+++.+.+|... ++|+|||
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999888877889999999999999999999999 899999999854 444211 133444555543 5899999
Q ss_pred EeCCCCcchh------H-------------HHH----------hh------hhcccccCCccccchHH--HHHHHHHHhh
Q 012056 317 IAEGAGQDLL------A-------------ESL----------QS------MNQQDASGNKLLQDVGL--WISHKIKDHF 359 (472)
Q Consensus 317 vaEG~~~~~~------~-------------~~~----------~~------~~~~D~~G~~~l~~ig~--~l~~~I~~~~ 359 (472)
||||+.+... . +.+ .. ...+|++||+++++++. .|++++++++
T Consensus 415 VsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 415 IPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred EeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 9999875110 0 000 00 02479999999998765 6666666655
Q ss_pred ccc--ceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eeeeechhhhhh
Q 012056 360 ARL--HKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINE 428 (472)
Q Consensus 360 ~~~--~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~ 428 (472)
... ....+..+...+||.|||+.|+.+|..||+.||..|++++.+|.||+|++++|- ++..+||..++.
T Consensus 495 ~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 495 AKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 421 123456777889999999999999999999999999999999999999999972 245699999887
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.5e-63 Score=563.59 Aligned_cols=334 Identities=18% Similarity=0.197 Sum_probs=277.1
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCccc-ccccCC--
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTIL-GTSRGG-- 166 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~L-GssR~~-- 166 (472)
..+|||||||||||||||+|||++++++...+ +. ++| ++||.||+++++++|+.++|++|+++|||+| ||+|..
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~-g~-~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f 911 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLK-GV-CIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSL 911 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhC-Ce-EEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCC
Confidence 45899999999999999999999999886443 33 455 5599999999999999999999999999998 999963
Q ss_pred ---CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC--cCcccCchhHHHHHHH
Q 012056 167 ---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQR 241 (472)
Q Consensus 167 ---~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g--td~S~GfdTA~~~~~~ 241 (472)
+.+++++++|++++||+||+||||||+++|..|++++.+.|++++||||||||||||.+ ||+|||||||++++++
T Consensus 912 ~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~se 991 (1419)
T PTZ00287 912 FDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYAS 991 (1419)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccc-----hhhHHHHHHHHHHh-CCcEEE
Q 012056 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG-----EGGLYEFIEKRLKE-NGHMVI 315 (472)
Q Consensus 242 ~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~-----~~~~~~~i~~r~~~-~~~~vI 315 (472)
+|++|++||.|++++|||||||||+|||||+++|||+ +||+|||||++++-+. .+.+++.|++|.+. ++|+||
T Consensus 992 aI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIV 1070 (1419)
T PTZ00287 992 LIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTV 1070 (1419)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999998889999999999999999999999 8999999999987211 23566777777766 478999
Q ss_pred EEeCCCCcc------hhHH-------------------------------------------------H-----------
Q 012056 316 VIAEGAGQD------LLAE-------------------------------------------------S----------- 329 (472)
Q Consensus 316 vvaEG~~~~------~~~~-------------------------------------------------~----------- 329 (472)
||+||.-.. ++.| .
T Consensus 1071 lV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~ 1150 (1419)
T PTZ00287 1071 LIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLA 1150 (1419)
T ss_pred EEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHH
Confidence 999996421 1100 0
Q ss_pred --------H-hhhhcccccCCccccchH--HHHHHHHHHhhcccce-----eeeeeeeeCCCccccCCCCChhhHHHHHH
Q 012056 330 --------L-QSMNQQDASGNKLLQDVG--LWISHKIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTL 393 (472)
Q Consensus 330 --------~-~~~~~~D~~G~~~l~~ig--~~l~~~I~~~~~~~~~-----~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~ 393 (472)
+ .+.-.+|. ||+++..|. +.|++++++++..+.. ..+...+--+||..||+.||-+|+.||+.
T Consensus 1151 lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~HffGYegR~~~PS~FD~~y~Y~ 1229 (1419)
T PTZ00287 1151 LLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHFFGYQGRSSLPSEFDCKLAYS 1229 (1419)
T ss_pred HHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeeccccccccCCCCccchHHHHH
Confidence 0 00123577 888887543 4667777666542211 11221112379999999999999999999
Q ss_pred HHHHHHHHHHcCCCceEEEEECC-------eeeeechhhhhh
Q 012056 394 LAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINE 428 (472)
Q Consensus 394 lG~~AV~~~~~G~tg~mvgi~~~-------~~~~vPl~~v~~ 428 (472)
||..|..++.+|.||+|.+++|- +...+||..++.
T Consensus 1230 LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1230 YGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 99999999999999999999872 246799988776
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=1.6e-54 Score=488.95 Aligned_cols=334 Identities=16% Similarity=0.211 Sum_probs=264.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe--eccC----hhHHhhhhhcCCcccccc-
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT--INLT----PKVVNDIHKRGGTILGTS- 163 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~--~~L~----~~~v~~~~~~GGs~LGss- 163 (472)
.+++|||..|||+||+|+||.+++..+.+ . .++||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 675 ~~~vgIv~~g~~aPG~NnVI~g~~~~~~~-~---gvig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~ 750 (1328)
T PTZ00468 675 CESLGLILSCLSTPGTQNVICGLVNGLPS-L---KQLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGV 750 (1328)
T ss_pred ceeEEEEecCCCCccHHHHHHHHHHHHHh-C---CcEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeeccc
Confidence 47999999999999999999999998853 2 29999999999999874 4565 578999999999999998
Q ss_pred ---------cCC---------C---------------ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcC---
Q 012056 164 ---------RGG---------H---------------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG--- 207 (472)
Q Consensus 164 ---------R~~---------~---------------~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~--- 207 (472)
|+. + +.+.+.+.|++++||+||+||||||+++|..|++++.+++
T Consensus 751 ~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~ 830 (1328)
T PTZ00468 751 EIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNG 830 (1328)
T ss_pred cccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcccc
Confidence 631 1 3478999999999999999999999999999999987764
Q ss_pred --CCceeeccccccccCccC--cCcccCchhHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcce
Q 012056 208 --LKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDC 283 (472)
Q Consensus 208 --~~i~vvgIPkTIDNDi~g--td~S~GfdTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ 283 (472)
..++|||||||||||+++ ||+|||||||+++++++|.++..+|.|+++||||||||||+|||||+++|||+ +||+
T Consensus 831 ~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gani 909 (1328)
T PTZ00468 831 MKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPNL 909 (1328)
T ss_pred ccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCCE
Confidence 458999999999999988 99999999999999999955444444445789999999999999999999999 8999
Q ss_pred EecCCCC--------------CCccc-hhhHHHHHHHHHHh-CCcEEEEEeCCCCcch---------hHHH---------
Q 012056 284 CLIPESP--------------FYLEG-EGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL---------LAES--------- 329 (472)
Q Consensus 284 ilIPE~~--------------~~l~~-~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~---------~~~~--------- 329 (472)
|+|||++ +++++ .+.+++.|.+|.+. ++|++|||+||+.+.+ +.+.
T Consensus 910 vlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~~ 989 (1328)
T PTZ00468 910 VVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNAS 989 (1328)
T ss_pred EEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhcccccc
Confidence 9999997 44332 23455667777765 4789999999975332 1110
Q ss_pred -----------------------Hh---h-h---hcccccCCccccchH--HHHHHHHHHhhcccce-----eeeeeeee
Q 012056 330 -----------------------LQ---S-M---NQQDASGNKLLQDVG--LWISHKIKDHFARLHK-----MAINLKYI 372 (472)
Q Consensus 330 -----------------------~~---~-~---~~~D~~G~~~l~~ig--~~l~~~I~~~~~~~~~-----~~~~l~~i 372 (472)
+. . . --.|..||+++..|. ..|++++++++..+.. ..+..-+-
T Consensus 990 ~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~H 1069 (1328)
T PTZ00468 990 NSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCF 1069 (1328)
T ss_pred chhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceeec
Confidence 00 0 0 013444888887653 4677777766542211 12221122
Q ss_pred CCCccccCCCCChhhHHHHHHHHHHHHHHHHcCC-CceEEEEECC-------eeeeechhhhhhc
Q 012056 373 DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY-TGFTVGPVNG-------RHAYIPFNRINER 429 (472)
Q Consensus 373 ~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~-tg~mvgi~~~-------~~~~vPl~~v~~~ 429 (472)
-+||.-||+.||-+|+.||+.||+.|..++.+|. ||+|.+++|- +...+||..++.-
T Consensus 1070 ffGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~ 1134 (1328)
T PTZ00468 1070 SFTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTL 1134 (1328)
T ss_pred cccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCc
Confidence 3799999999999999999999999999999999 6999999872 2457999988763
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-50 Score=428.24 Aligned_cols=467 Identities=38% Similarity=0.467 Sum_probs=409.6
Q ss_pred CCCCCCceeecCCC------CcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHh--ccCCCCcc
Q 012056 3 HSGNLQLKVVNGDA------GYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVV--HKDSPRGT 74 (472)
Q Consensus 3 ~~~~~~~~~~~~~~------~~~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~--~~~~~~~~ 74 (472)
|-|....+|.||+. ....|+..+.....|+.|.+++++..++.+|.+...++..++.|.+.+.. .....+..
T Consensus 24 ~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl 103 (666)
T KOG2440|consen 24 YRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSL 103 (666)
T ss_pred ccCceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccch
Confidence 34566778899988 67789999999999999999999999999999999999999999888742 23334566
Q ss_pred cccccCCcccccccCCCeeEEEEccCCCCCchhHHHHHHHHHHH-HhcCCcEEEEEccc----------------ccccc
Q 012056 75 HFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLY-HMYGVSKILGIDGG----------------YRGFY 137 (472)
Q Consensus 75 ~f~~~~~~~~~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~-~~~~~~~v~Gi~~G----------------~~GL~ 137 (472)
.+.+++|+++.+|.++.+|++|+||||.|||.|.+|+++|-.+. ..|+..+++|+.-+ ++||+
T Consensus 104 ~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv 183 (666)
T KOG2440|consen 104 TGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFV 183 (666)
T ss_pred hHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEE
Confidence 78899999999999999999999999999999999999998775 56777899998877 88999
Q ss_pred cCCe--eccChhHHhhhhhcCCcccccccCCCC---hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCcee
Q 012056 138 SKNT--INLTPKVVNDIHKRGGTILGTSRGGHD---TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAV 212 (472)
Q Consensus 138 ~~~~--~~L~~~~v~~~~~~GGs~LGssR~~~~---~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~v 212 (472)
...+ .-+....|..|+..++++++++|..++ +.++++..++.++|.+|||||+++.++|..++++++++.++.-+
T Consensus 184 ~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv 263 (666)
T KOG2440|consen 184 AEVMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLV 263 (666)
T ss_pred eeehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheee
Confidence 8877 566677899999999999999999887 78899999999999999999999999999999999999999899
Q ss_pred eccccccccCccCcCcccCch--hHHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCC-
Q 012056 213 AGIPKTIDNDIPVIDKSFGFD--TAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES- 289 (472)
Q Consensus 213 vgIPkTIDNDi~gtd~S~Gfd--TA~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~- 289 (472)
+++||||||||+-.+.+++|| ||++..+++|.+++.+|.|+-+++.||++|||+|+++|+++++|++..|++++||.
T Consensus 264 ~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr 343 (666)
T KOG2440|consen 264 VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELR 343 (666)
T ss_pred ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhc
Confidence 999999999999888888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------CCCcc--chhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhh-hhcccccCCc
Q 012056 290 ------------------------PFYLE--GEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQS-MNQQDASGNK 342 (472)
Q Consensus 290 ------------------------~~~l~--~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~~~~~~-~~~~D~~G~~ 342 (472)
||..+ ..-..+....++++...|.+++++|++++.+....... .-..|.+++.
T Consensus 344 ~~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~ 423 (666)
T KOG2440|consen 344 GRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGEL 423 (666)
T ss_pred chhhhhhhhHHhhhhccccccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhh
Confidence 77766 32234566778888888899999999988665443221 1224999999
Q ss_pred cccchHHHHHHHHHHhhcccce-eeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCceEEEEECCeeeee
Q 012056 343 LLQDVGLWISHKIKDHFARLHK-MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 421 (472)
Q Consensus 343 ~l~~ig~~l~~~I~~~~~~~~~-~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mvgi~~~~~~~v 421 (472)
.+.|++.|+.+-.++++..... ....++||+|.|++|..+.++.|-.+++.+++.++|.++++++++.+++++....+.
T Consensus 424 ~~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~s 503 (666)
T KOG2440|consen 424 IWKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYS 503 (666)
T ss_pred HHHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeec
Confidence 9999999999988887653321 356899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCccCccHHHHHHHHHhcCCCCCCChHHHHHhhhcCCCCC
Q 012056 422 PFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPSCP 469 (472)
Q Consensus 422 Pl~~v~~~~~~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~~~~~~~~~ 469 (472)
|.-..+.....+|..+..|.++++.|.||+|++..+...-..+.+.|+
T Consensus 504 nnvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~g 551 (666)
T KOG2440|consen 504 NNVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSG 551 (666)
T ss_pred CCccccccccccchhHhhhhhhhhhccCCcccccceeEEEEecCCCcc
Confidence 988888889999999999999999999999999877655555577774
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-46 Score=397.38 Aligned_cols=350 Identities=19% Similarity=0.219 Sum_probs=307.8
Q ss_pred cccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-----CCcccccccC----------Cccc
Q 012056 20 LEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG----------PRQK 84 (472)
Q Consensus 20 ~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~----------~~~~ 84 (472)
.|||.|+++.+|+ .+.+|.++|+|+++++..|..+..++. .+++ +|+.+|..++ |+..
T Consensus 293 ~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~~-~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~ 365 (666)
T KOG2440|consen 293 QEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLASR-DKDFCLAPELRGRKFTLNLNTYKILDVVDPRAE 365 (666)
T ss_pred HHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhcC-ccceeehhhhcchhhhhhhhHHhhhhccccccc
Confidence 6799999998777 589999999999999999999999974 5665 6888888876 2222
Q ss_pred ccccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCccccccc
Q 012056 85 VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (472)
Q Consensus 85 ~~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR 164 (472)
.......+++++++.|-++.|||++++++++.+. ..++++|++.+||+||..+...++.|.+|..|..+||+.+||.|
T Consensus 366 ~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~gtk~ 443 (666)
T KOG2440|consen 366 QDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALGTKR 443 (666)
T ss_pred cCCCCceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhheecc
Confidence 1111222679999999999999999999999874 57789999999999999988999999999999999999999999
Q ss_pred CC---CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-CCCceeeccccccccCccCcCcccCchhHHHHHH
Q 012056 165 GG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQ 240 (472)
Q Consensus 165 ~~---~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~ 240 (472)
.. .+++.|..+|++++|++|+++||+.++.+...|...+..+ ++++++|.||.|+.|++|+|++|.|.|||+|.++
T Consensus 444 ~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N~~~ 523 (666)
T KOG2440|consen 444 ETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALNAWA 523 (666)
T ss_pred cCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHhhhh
Confidence 73 3799999999999999999999999999999998776666 8999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC-CcEEEEEeC
Q 012056 241 RAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN-GHMVIVIAE 319 (472)
Q Consensus 241 ~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~-~~~vIvvaE 319 (472)
+.+|.+++.|..+++++|++|+||.+|||||.+++|+. +++.+||||++|+++++++..+++..+++.. +..+++.+|
T Consensus 524 ~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l~~r~e 602 (666)
T KOG2440|consen 524 RVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGLQLRNE 602 (666)
T ss_pred hhhhhccCCcccccceeEEEEecCCCccceeccccccc-cccccccccccccHHHHHHHHHHHHHHhhhcCCCceEEeCC
Confidence 99999999999999999999999999999999999999 8999999999999999999999998888764 445999999
Q ss_pred CCCcchhHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHH
Q 012056 320 GAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAV 399 (472)
Q Consensus 320 G~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV 399 (472)
|+..++.+. +|.+.+.+.-+. .+..++..|||+|.|+.|+++||.++++||.+|+
T Consensus 603 ~a~~~~~t~---------------------~~~~~~~~~~~~----~f~~~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~ 657 (666)
T KOG2440|consen 603 GADANYTTL---------------------FLENIYSEEGKG----KFQARTNVLGHIQQGGSPSPFDRNMGTKMAVKAI 657 (666)
T ss_pred CcchhhhHH---------------------HHHHHHhhhccc----ccceeeccccceecCCCCChHHHHHHHHHHHHHH
Confidence 998877643 455555544221 3556778899999999999999999999999999
Q ss_pred HHHHc
Q 012056 400 HGAVA 404 (472)
Q Consensus 400 ~~~~~ 404 (472)
+++..
T Consensus 658 ~~~~~ 662 (666)
T KOG2440|consen 658 ELITI 662 (666)
T ss_pred HHHHh
Confidence 98754
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.43 E-value=0.16 Score=50.53 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=42.4
Q ss_pred HHHHHHHhCC------cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhH---HHHHHHH
Q 012056 172 IVDSIQDRGI------NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA---VEEAQRA 242 (472)
Q Consensus 172 i~~~l~~~~I------d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA---~~~~~~~ 242 (472)
.-+..++|++ |.+++||||||+-.|..... ...+||+||-. -++||-|. .+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~~ 75 (246)
T PRK04761 11 LEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLER 75 (246)
T ss_pred HHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHHH
Confidence 3444566777 99999999999876554432 34678999865 26899884 3555566
Q ss_pred HHHHHH
Q 012056 243 INAAHV 248 (472)
Q Consensus 243 i~~i~~ 248 (472)
++++..
T Consensus 76 l~~~~~ 81 (246)
T PRK04761 76 IAAAEP 81 (246)
T ss_pred HHHhhc
Confidence 666543
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.11 E-value=0.39 Score=48.92 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
+.|.+|+||||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++..
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHc
Confidence 6899999999999755544332 34678998853 379999884 556677777654
No 32
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.87 E-value=0.46 Score=47.86 Aligned_cols=56 Identities=30% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH--HHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~~i~~i~~ 248 (472)
+.|.+++||||||+-.|...... .-.++|++||.. -++||-|.++ .+-++++++..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~---~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc---cCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHc
Confidence 46899999999998665544321 114678999863 3799999753 45666666654
No 33
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=90.25 E-value=2.5 Score=42.27 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=76.1
Q ss_pred cccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC--ccCcCcccCchhHHH
Q 012056 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND--IPVIDKSFGFDTAVE 237 (472)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND--i~gtd~S~GfdTA~~ 237 (472)
|.++....+.++.++.|.++++|++|+.+-......-..+.+ . ++|+|.+=.+.+++ ++ ++.+| =.+
T Consensus 36 l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~~~----~V~~D-~~~ 104 (279)
T PF00532_consen 36 LCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEGVP----SVYID-NYE 104 (279)
T ss_dssp EEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCTSC----EEEEE-HHH
T ss_pred EecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCcccCC----EEEEc-chH
Confidence 334444445558899999999999999976666333333322 2 57788877777766 22 33333 112
Q ss_pred HHHHHHHHHHHhhhcCcce-EEEEEe-------cCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh
Q 012056 238 EAQRAINAAHVEAESIENG-IGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 309 (472)
Q Consensus 238 ~~~~~i~~i~~~A~s~~~r-v~iVEv-------MGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~ 309 (472)
...++.+.+. ..+| ++ |.++-. .-|..||..+....-- ..+-.+|.+..++.+ .=.+.+++-++.
T Consensus 105 a~~~a~~~Li--~~Gh-~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~---~g~~~~~~ll~~ 177 (279)
T PF00532_consen 105 AGYEATEYLI--KKGH-RRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYE---SGYEAARELLES 177 (279)
T ss_dssp HHHHHHHHHH--HTTC-CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHH--hccc-CCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHH---HHHHHHHHHHhh
Confidence 2223333333 2344 56 666654 3466688775554211 234556666667665 233445555555
Q ss_pred CCc--EEE
Q 012056 310 NGH--MVI 315 (472)
Q Consensus 310 ~~~--~vI 315 (472)
+.. +++
T Consensus 178 ~p~idai~ 185 (279)
T PF00532_consen 178 HPDIDAIF 185 (279)
T ss_dssp STT-SEEE
T ss_pred CCCCEEEE
Confidence 544 555
No 34
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.17 E-value=0.37 Score=48.40 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=40.9
Q ss_pred HHHHHHHHhCC-----cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH--HHHH-H
Q 012056 171 KIVDSIQDRGI-----NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQR-A 242 (472)
Q Consensus 171 ~i~~~l~~~~I-----d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~-~ 242 (472)
++.+.++.+++ |.+++||||||+-.|...+. ..++||+||-. -++||-|.++ .+.+ .
T Consensus 19 ~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFL~~~~~~~~~~~~ 83 (259)
T PRK00561 19 KLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSFNETDLDQNF 83 (259)
T ss_pred HHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec----------CCCccccccCHHHHHHHH
Confidence 44445555555 99999999999876554432 34678998862 2799999654 4444 4
Q ss_pred HHHHH
Q 012056 243 INAAH 247 (472)
Q Consensus 243 i~~i~ 247 (472)
++.+.
T Consensus 84 ~~~l~ 88 (259)
T PRK00561 84 ANKLD 88 (259)
T ss_pred HHHHh
Confidence 55553
No 35
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.96 E-value=0.48 Score=48.73 Aligned_cols=55 Identities=29% Similarity=0.421 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHHh
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~~ 249 (472)
+.|.++++|||||+-.|..... ..++||+||.. -++||-|.+ +.+.++++++...
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcC
Confidence 6899999999999876655432 34678999874 378998875 5566777776544
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.87 E-value=0.89 Score=45.78 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCC-CceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGL-KVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~-~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
+.|.+++||||||+-.|..... .. +++++||.. +-++||-|.+ +.+.++++++..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 3689999999999866554432 12 467787753 2489998763 455666666654
No 37
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.10 E-value=0.6 Score=47.76 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
+.|.++++|||||+-.|..... ..++|++||-. -++||-|.+ +.+.++++++..
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHc
Confidence 6899999999999876655432 24678999863 269999984 455666776653
No 38
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.07 E-value=0.68 Score=47.27 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHHhh
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVEA 250 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~~A 250 (472)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++...-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCC
Confidence 5899999999999765554432 34678999864 379999986 45677777776543
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.89 E-value=1.1 Score=44.89 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=36.5
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH--HHHHHHHHHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAHV 248 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~~i~~i~~ 248 (472)
.+.|.+++||||||+-.|.... ++||+||-. -++||-|..+ .+-++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~----------G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA----------GRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC----------CCCccccccCHHHHHHHHHHHHc
Confidence 4679999999999986554332 577888862 2689999754 34566666544
No 40
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.97 E-value=0.8 Score=47.08 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
+.|.+|+||||||+-.|..... ..++|++||-. -++||-|.+ +.+.++++++..
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVLA 123 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHHc
Confidence 6899999999999866554432 35688999842 389999874 445566666543
No 41
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.88 E-value=1 Score=46.03 Aligned_cols=53 Identities=26% Similarity=0.496 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH--HHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 247 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~~i~~i~ 247 (472)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.++ .+.++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999876654432 34678888763 3689998865 3445555554
No 42
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=87.82 E-value=0.27 Score=49.72 Aligned_cols=63 Identities=24% Similarity=0.527 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
.....+...+.|.++++|||||+..+.+... ..++||+||+. -+.||-|.. +.+.++++++..
T Consensus 67 ~~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 67 NALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp ECCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 3445566789999999999999987766543 35789999984 266776653 445555665544
No 43
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=87.49 E-value=33 Score=34.37 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=52.1
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
...||++...-..|-.+.++.++...+.. ++ ..++- .-+....+...
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 110 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFL-------------------------------LQGGKDGEQLA 110 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHH
Confidence 35899999776778888888888777643 22 22220 00111112345
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
..++.|...++|++|+.+.+.... .+.+.+.+.++ |+|.+
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~i--PvV~~ 150 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKGI--PVVFA 150 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcCC--CEEEE
Confidence 677888889999999998765322 22333444454 45533
No 44
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=86.62 E-value=1 Score=49.13 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
++|.+|+||||||+-.|..+.. ...+||+||. --++||-|.+ +.+.++++++..
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHHc
Confidence 6899999999999876665543 3457888883 2489999875 445566666643
No 45
>PLN02929 NADH kinase
Probab=85.81 E-value=0.96 Score=46.43 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=40.0
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccc---ccccCc-cC----cCcccCchhHH--HHHHHHHHHHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK---TIDNDI-PV----IDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk---TIDNDi-~g----td~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
.+.|.+|++|||||+-.|.... ..++||+||-. +.+.-- .. ...++||-|++ +.+-++++++..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 4579999999999987655432 23678999843 222210 00 12389999985 445566666653
No 46
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.13 E-value=1.4 Score=45.07 Aligned_cols=55 Identities=29% Similarity=0.413 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHHh
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~~ 249 (472)
+.|.++++|||||+-.+..... ..++||+||.. -++||-|.+ +.+.++++++...
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999876654332 34678999885 268999874 4566777776543
No 47
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=84.12 E-value=49 Score=33.21 Aligned_cols=70 Identities=6% Similarity=0.156 Sum_probs=44.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+||++...-..+=...+++++-+.+.. ++ .+++-+. +........
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~ 105 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILCN-------------------------------AWNNLEKQR 105 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHH
Confidence 35899998776777788888888776643 33 2322110 011111234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQ 193 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~ 193 (472)
+.++.|...++|++++.+.+.+-
T Consensus 106 ~~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 106 AYLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHHcCCCEEEEecCCCCH
Confidence 66677888999999999876443
No 48
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=83.89 E-value=1.1 Score=46.52 Aligned_cols=50 Identities=36% Similarity=0.635 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (472)
+|....++.+.++|+|-+++.|||||.+.+..- . +-++||.|||.=.-|=
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~a---v---~~~vPvLGipaGvk~~ 136 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVAEA---V---GADVPVLGIPAGVKNY 136 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHHhh---c---cCCCceEeecccccee
Confidence 578889999999999999999999998764432 2 4578999999866554
No 49
>PRK13337 putative lipid kinase; Reviewed
Probab=82.77 E-value=5.7 Score=40.27 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHH
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~ 245 (472)
..+.+++++.+.+.+.|.|+++|||||...+..- +...+..+++-.||.==-||.. +++|...-...+++.
T Consensus 43 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~g---l~~~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~~--- 113 (304)
T PRK13337 43 PGDATLAAERAVERKFDLVIAAGGDGTLNEVVNG---IAEKENRPKLGIIPVGTTNDFA---RALHVPRDIEKAADV--- 113 (304)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHH---HhhCCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHHH---
Confidence 3566777777777889999999999998775532 2222334567889988788875 355554433333333
Q ss_pred HHHhhhcCcceEEEEEecCCCc
Q 012056 246 AHVEAESIENGIGVVKLMGRYC 267 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMGr~~ 267 (472)
+. .+..+.+-+.++-+|..
T Consensus 114 i~---~g~~~~vDlg~vn~~~f 132 (304)
T PRK13337 114 II---EGHTVPVDIGKANNRYF 132 (304)
T ss_pred HH---cCCeEEEEEEEECCEEE
Confidence 32 12224566666666543
No 50
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=82.52 E-value=42 Score=31.30 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=71.7
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
|||++..+-..|-.+.+++++-..+.. .+ .++. +. .+........+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~l~-------------~~------------------~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AG-YQVL-------------LA------------------NSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cC-CeEE-------------EE------------------eCCCCHHHHHHH
Confidence 589999877788888888888776642 22 1111 00 010011234567
Q ss_pred HHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHhhhc
Q 012056 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAES 252 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~A~s 252 (472)
++.+.+.++|++++.+.+.+... ..+.+.+.+ +++|.+-.+.++ .....++++|.. +....+.+.+....
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~g-- 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEKG-- 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHhc--
Confidence 77777889999999988766543 223333334 567776666553 122345666544 33344444444332
Q ss_pred CcceEEEEEec
Q 012056 253 IENGIGVVKLM 263 (472)
Q Consensus 253 ~~~rv~iVEvM 263 (472)
++++.++-..
T Consensus 118 -~~~i~~i~~~ 127 (264)
T cd01537 118 -HRRIALLAGP 127 (264)
T ss_pred -CCcEEEEECC
Confidence 3567777543
No 51
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=82.33 E-value=15 Score=37.77 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=87.0
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~ 170 (472)
..||++..--.-|=....++++-..+.. ++ ..+ +|.++.. ++..+
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHH
Confidence 4788887644457777777887776642 22 222 3444443 34466
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc-cCc--cCcCcccCchhHHHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID-NDI--PVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID-NDi--~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
++.+.|...++|++|+.| ..... .+.+.+.+.+++ +|.|=.+.+ .++ -++|..-|...|++...+
T Consensus 105 ~~~~~l~~~~vdGiIi~~-~~~~~---~~~~~l~~~~~P--~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~------ 172 (333)
T COG1609 105 EYLETLLQKRVDGLILLG-ERPND---SLLELLAAAGIP--VVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE------ 172 (333)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCH---HHHHHHHhcCCC--EEEEeCCCccCCCCEEEEChHHHHHHHHHHHHH------
Confidence 888999999999999999 22222 122333444554 554433333 223 233444444444433322
Q ss_pred HhhhcCcceEEEEEe-------cCCCcchHHHHHhhccCCcc--eEecCCCCCCccchhhHHHHHHHHHHh
Q 012056 248 VEAESIENGIGVVKL-------MGRYCGFIAMYATLGSRDVD--CCLIPESPFYLEGEGGLYEFIEKRLKE 309 (472)
Q Consensus 248 ~~A~s~~~rv~iVEv-------MGr~~G~LA~~aaLA~~~ad--~ilIPE~~~~l~~~~~~~~~i~~r~~~ 309 (472)
.+| +++.++-. .-|..||+.+.... +.. -.++.+..|+.+ .-.+.+.+-+..
T Consensus 173 ---~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~---~~~~~~~~i~~~~~~~~---~g~~~~~~ll~~ 233 (333)
T COG1609 173 ---LGH-RRIAFIGGPLDSSASRERLEGYRAALREA---GLPINPEWIVEGDFSEE---SGYEAAERLLAR 233 (333)
T ss_pred ---CCC-ceEEEEeCCCccccHhHHHHHHHHHHHHC---CCCCCcceEEecCCChH---HHHHHHHHHHhc
Confidence 234 45666543 33446777765543 333 356667667555 344445544543
No 52
>PRK13055 putative lipid kinase; Reviewed
Probab=81.84 E-value=3.6 Score=42.50 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT 234 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT 234 (472)
.+.+++++.....+.|.|+++|||||+..+.. .+...+..+++--||.==-||+. +++|..+
T Consensus 46 ~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvn---gl~~~~~~~~LgiiP~GTgNdfA---r~Lgi~~ 107 (334)
T PRK13055 46 NSAKNEAKRAAEAGFDLIIAAGGDGTINEVVN---GIAPLEKRPKMAIIPAGTTNDYA---RALKIPR 107 (334)
T ss_pred ccHHHHHHHHhhcCCCEEEEECCCCHHHHHHH---HHhhcCCCCcEEEECCCchhHHH---HHcCCCC
Confidence 35566776667788999999999999876432 22222334567778987788875 3556543
No 53
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.83 E-value=1.7 Score=44.59 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHH---HHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA---QRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~---~~~i~~i~~ 248 (472)
+.|.++++|||||+-.+..... +.++|++||.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 5899999999999876554332 34677888865 3488999976422 466666654
No 54
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.62 E-value=0.95 Score=45.84 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=36.6
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH--HHHHHHHHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 247 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~~i~~i~ 247 (472)
.+.|.++++|||||+-.|..+. ..++|++|||. | ++||-|.++ .+-++++++.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~-------G---~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM-------G---TLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC-------C---CCCccccCCHHHHHHHHHHHH
Confidence 4789999999999997655432 23688999984 2 568888754 3344444443
No 55
>PRK13054 lipid kinase; Reviewed
Probab=81.41 E-value=5.1 Score=40.57 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHH
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~ 244 (472)
..+..++++...+.+.|.++++|||||+..+. .|.+. ..+.++++..||.==-||+. .++|-..-...+.+
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~--- 113 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALK--- 113 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHH---
Confidence 34566777777777899999999999987653 33221 01334678889988888886 34555433333333
Q ss_pred HHHHhhhcCcceEEEEEecCC
Q 012056 245 AAHVEAESIENGIGVVKLMGR 265 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVEvMGr 265 (472)
.+. ....+++-+.++-+|
T Consensus 114 ~i~---~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 114 LAI---EGRAQPIDLARVNDR 131 (300)
T ss_pred HHH---hCCceEEEEEEEcCc
Confidence 322 122345666666555
No 56
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.88 E-value=2.5 Score=43.13 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA--VEEAQRAINAAH 247 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA--~~~~~~~i~~i~ 247 (472)
+.|.+|++|||||+-.|..... +.+++++||- --++||-|. .+.+-++++++.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn----------~G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGIN----------HGRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEc----------CCCccccccCCHHHHHHHHHHHH
Confidence 5899999999999876654432 3467899886 237899996 345666777664
No 57
>PLN02727 NAD kinase
Probab=80.75 E-value=1.9 Score=50.15 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHHh
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~~ 249 (472)
++|.+|+||||||+-.|..+.. +..+||+||-. -++||-|-+ +.+.+.++++...
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999877766543 34678888753 389999865 4556777776543
No 58
>PRK11914 diacylglycerol kinase; Reviewed
Probab=80.09 E-value=2.6 Score=42.76 Aligned_cols=69 Identities=29% Similarity=0.532 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh-HHHHHHHHH
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT-AVEEAQRAI 243 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT-A~~~~~~~i 243 (472)
.+.+++++.+.+.+.|.++++|||||...+. +.+. +.++++-.||.==-||+. .++|..+ -.+.+.+.+
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv---~~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i 120 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNAL---QVLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVI 120 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHh---HHhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHH
Confidence 3566777777778899999999999987654 2222 335678889988889987 5778765 354444443
No 59
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.97 E-value=58 Score=31.24 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=53.8
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
.|||+...-..|-++.+++++.+.+.. ++ .+++- ..+........+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLI-------------------------------ANSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCChHHHHHH
Confidence 378888776788888889898877753 32 23321 0011111224567
Q ss_pred HHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
++.|..+++|++++.+++.... .+.+.+++.+ +|+|.+=...+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 7889999999999998864322 2333444444 55665543333
No 60
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.68 E-value=42 Score=32.19 Aligned_cols=127 Identities=7% Similarity=0.047 Sum_probs=67.2
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTSK 171 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~~ 171 (472)
+||++...-..|-...+++++.+.+.....+.+++ +.++... .....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47888876677888888888887764311111111 1111111 22346
Q ss_pred HHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHHHhhh
Q 012056 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~~~A~ 251 (472)
.++.+...++|++++.+.+... .....+.+.+++ +|||.+=. +.++.+.++++|.. .....+.+.+.....
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~~--~~~~i~~~~~~~--ipvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSKG--IAPAVKRAQAAG--IVVVAVDV----AAEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChhH--hHHHHHHHHHCC--CeEEEecC----CCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 6777888999999998765431 122224444445 45665522 22233456776642 233333334433323
Q ss_pred cCcceEEEEE
Q 012056 252 SIENGIGVVK 261 (472)
Q Consensus 252 s~~~rv~iVE 261 (472)
.+ +++.++-
T Consensus 120 g~-~~i~~i~ 128 (271)
T cd06321 120 GK-GNVAILN 128 (271)
T ss_pred CC-ceEEEEe
Confidence 43 5677774
No 61
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.37 E-value=3 Score=46.49 Aligned_cols=54 Identities=31% Similarity=0.446 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~ 248 (472)
++|.+|+||||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++..
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHHc
Confidence 5799999999999866554432 34678998854 379999975 445666666543
No 62
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=79.33 E-value=70 Score=31.81 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=38.8
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (472)
..||++...-..|=.+.++.++-+.+.. ++ .+++ + -++... ....
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~~-~g-~~~~---------i-----------------------~~~~~~~~~~~ 105 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIATM-YK-YNII---------L-----------------------SNSDEDPEKEV 105 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHHH-cC-CEEE---------E-----------------------EeCCCCHHHHH
Confidence 5899998654556666777777665532 22 2221 0 011111 1223
Q ss_pred HHHHHHHHhCCcEEEEEcCCC
Q 012056 171 KIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdg 191 (472)
+.++.|...++|++|+.+-..
T Consensus 106 ~~~~~l~~~~vdGiIi~~~~~ 126 (329)
T TIGR01481 106 QVLNTLLSKQVDGIIFMGGTI 126 (329)
T ss_pred HHHHHHHhCCCCEEEEeCCCC
Confidence 566778889999999987543
No 63
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=79.24 E-value=71 Score=31.79 Aligned_cols=67 Identities=4% Similarity=0.011 Sum_probs=41.4
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
..||++...-..|-.+.+++++.+.+.. ++ .++.-+ .+........+
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 108 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQARQ-RG-YQLLIA-------------------------------CSDDQPDNEMR 108 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 5899998765667778888887776642 22 222200 01111112346
Q ss_pred HHHHHHHhCCcEEEEEcCCC
Q 012056 172 IVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdg 191 (472)
+++.|...++|++|+.+.+.
T Consensus 109 ~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 109 CAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred HHHHHHHcCCCEEEEcCCCC
Confidence 67778889999999988754
No 64
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.88 E-value=1.6 Score=44.12 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH--HHHHHHHHH
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAA 246 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~--~~~~~i~~i 246 (472)
+.|.+++||||||+-.|..... ..++||+||-. -++||-|.++ .+.+.+.++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999876554432 34678998842 3699988753 334444443
No 65
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.17 E-value=50 Score=31.27 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
..+.++.+.+.++|++++...+.+-. ..+.+.+.+ +|+|.+
T Consensus 43 ~~~~i~~~~~~~vdgiii~~~~~~~~----~~~~~~~~~--ipvV~~ 83 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSSE----LAEECRRNG--IPVVLI 83 (266)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHH----HHHHHhhcC--CCEEEE
Confidence 44667778889999999988764432 133344445 456655
No 66
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=77.58 E-value=13 Score=40.74 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=60.4
Q ss_pred cEEEEEcccccccccCCeeccChhHHhhhhhcCCc---ccccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHH-HH
Q 012056 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT---ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VI 199 (472)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs---~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L 199 (472)
.+++-|.|=..|=- .-..+-++.+..+....|- +.-|.+ ..+..++++.+...+.|.++++|||||+.-+. -|
T Consensus 112 kr~lvIvNP~SGkg--~a~k~~~~~v~~~L~~~gi~~~v~~T~~-~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGKK--SASKIFFDVVKPLLEDADIQLTIQETKY-QLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCCc--chhHHHHHHHHHHHHHcCCeEEEEeccC-ccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 46777777776632 2222222346655555552 333433 34566777777777899999999999986543 23
Q ss_pred HHHHH-HcCCCceeeccccccccCccC
Q 012056 200 YEEIR-QRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 200 ~~~~~-~~~~~i~vvgIPkTIDNDi~g 225 (472)
.+.-. +.+.++++--||.==-||+.-
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhh
Confidence 21000 013467889999988999863
No 67
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.96 E-value=4.3 Score=41.08 Aligned_cols=52 Identities=29% Similarity=0.355 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH--HHHHHHHHHHHHh
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~--~~~~~~i~~i~~~ 249 (472)
+.|.++++|||||+-.|... +..||+||-. -++||-|.+ +.+.++++++...
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~--------~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR--------AKGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------cCCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcC
Confidence 68999999999998654432 1347888743 378998864 4456666666544
No 68
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=76.80 E-value=78 Score=30.98 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=54.5
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
+|||+...-.-|-...++.++...+.. ++ .++. +..+........+.
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~ 47 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE-LG-AEVI-------------------------------VQNANGDPAKQISQ 47 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EECCCCCHHHHHHH
Confidence 367777655667777777777766542 22 2222 01111111234567
Q ss_pred HHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc--CcccCch
Q 012056 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFD 233 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt--d~S~Gfd 233 (472)
++.+...++|++++.+.+.+. ...+.+++.+.+ +|||.+ |.+.+.. +.++++|
T Consensus 48 i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~----~~~~~~~~~~~~v~~d 102 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY----DRLILNSNVDYYVSFD 102 (288)
T ss_pred HHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE----CCCCCCCCcceEEEeC
Confidence 777888999999998866542 123334444445 456643 4444332 2345554
No 69
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=75.31 E-value=76 Score=30.13 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=66.1
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
.||++...-..|=.+..+.++.+.+.. ++ .+++-+. +..........
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIGN-------------------------------SDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHHHH
Confidence 377787666678888888888776643 33 2333110 11111223467
Q ss_pred HHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchhHHHHHHHHHHHHHHhhh
Q 012056 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINAAHVEAE 251 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdTA~~~~~~~i~~i~~~A~ 251 (472)
++.+...++|++++.+.+..... .+.+.+.++ |+|. +|++.+.. -.+++.|-. .....+++.+.. .
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~i--pvV~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~--~ 114 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAEQ----LEDLLKRGI--PVVF----VDREITGSPIPFVTSDPQ-PGMTEAVSLLVA--L 114 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChHH----HHHHHhCCC--CEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHHH--c
Confidence 78889999999999987655321 344445554 4553 45554321 134555532 122334444432 2
Q ss_pred cCcceEEEE
Q 012056 252 SIENGIGVV 260 (472)
Q Consensus 252 s~~~rv~iV 260 (472)
++ ++|.++
T Consensus 115 g~-~~I~~i 122 (265)
T cd06299 115 GH-KKIGYI 122 (265)
T ss_pred CC-CcEEEE
Confidence 43 456665
No 70
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=75.27 E-value=90 Score=30.94 Aligned_cols=70 Identities=7% Similarity=0.195 Sum_probs=44.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
...||++...-..|-.+.+++++-+.+.. ++ .+++-.. +........
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~ 102 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVLCN-------------------------------TEGDEQRMN 102 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEEEe-------------------------------CCCCHHHHH
Confidence 35899988666667888888888777643 22 2322000 000111234
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQ 193 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~ 193 (472)
+.++.|...++|++|+.+.+.+.
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcch
Confidence 66777888999999999876543
No 71
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=75.24 E-value=92 Score=31.01 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=41.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
..||++...-..|-.+.++.++.+.+.. ++ .+++-. -+........+
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~i~-------------------------------~~~~~~~~~~~ 107 (327)
T TIGR02417 61 RTIGLVIPDLENYSYARIAKELEQQCRE-AG-YQLLIA-------------------------------CSDDNPDQEKV 107 (327)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 5899998655567777778777776642 22 232210 00011112345
Q ss_pred HHHHHHHhCCcEEEEEcCCC
Q 012056 172 IVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdg 191 (472)
.++.|..+++|++|+.+.+.
T Consensus 108 ~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 108 VIENLLARQVDALIVASCMP 127 (327)
T ss_pred HHHHHHHcCCCEEEEeCCCC
Confidence 67778899999999988654
No 72
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=74.33 E-value=85 Score=30.21 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhCCcEEEEEcCC
Q 012056 169 TSKIVDSIQDRGINQVYIIGGD 190 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGd 190 (472)
..+..+.|...++|++|+.+.+
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 45 YEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHcCCCEEEECCcc
Confidence 4467777888999999998755
No 73
>PRK13059 putative lipid kinase; Reviewed
Probab=73.25 E-value=10 Score=38.43 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=41.1
Q ss_pred HHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHH
Q 012056 175 SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 175 ~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~ 242 (472)
...+.+.|.++++|||||...+. +.+.+.+.++++-.||.==-||.. .++|...-...+++.
T Consensus 51 ~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 112 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQ 112 (295)
T ss_pred HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHH
Confidence 33456889999999999987643 333334556778889988788875 356655444444443
No 74
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=73.17 E-value=12 Score=37.85 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=42.3
Q ss_pred cccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceeeccccccccCcc
Q 012056 162 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (472)
Q Consensus 162 ssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (472)
+.+...+.+++++.+.+.+.|.++++|||||+..+. .|.+. ..+.++++..||.==-||..
T Consensus 34 ~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~--~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 34 VTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI--RDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh--CCCCCCcEEEEcCCchhHHH
Confidence 334445677788777778899999999999987654 23221 11234568889988888875
No 75
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=72.73 E-value=7.2 Score=41.85 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=66.8
Q ss_pred CCeeEEEEccCCCCCchhH-HHHHHHHHHHHhcCC-----------cEEEEEccccccccc----CCeeccChhHHhhhh
Q 012056 90 DEVHACIVTCGGLCPGLNT-VIREIVCGLYHMYGV-----------SKILGIDGGYRGFYS----KNTINLTPKVVNDIH 153 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa-~Ir~vv~~~~~~~~~-----------~~v~Gi~~G~~GL~~----~~~~~L~~~~v~~~~ 153 (472)
++.|||++|+||.-|=-|. -+.+.-. ..|+. .+..-+|.||.--.- +.+++|+. +..+.
T Consensus 222 ~~akIALVTsgGivPkgnPd~i~ss~A---~~yg~Y~i~g~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLe 296 (431)
T TIGR01918 222 SKAKIAVVTSGGIVPKDNPDRIESSSA---SKYGMYDITGLDRLEGGVYETAHGGFDPAYANADPDRVVPVDV--LRDYE 296 (431)
T ss_pred hhCEEEEEecCCcccCCCCCcccccCC---CcceeEeCCCccccCccceEEeccccChHHHhcCCCeeeeHHH--HHHHH
Confidence 3469999999999998884 4432110 01111 123334555554431 12334332 22222
Q ss_pred hcC--C----ccc-----ccccC--CCChHHHHHHHHHhCCcEEEEEcCCCc-HHHHHHHHHHHHHcCCC
Q 012056 154 KRG--G----TIL-----GTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLK 209 (472)
Q Consensus 154 ~~G--G----s~L-----GssR~--~~~~~~i~~~l~~~~Id~LivIGGdgs-~~~a~~L~~~~~~~~~~ 209 (472)
..| | .+. ||++. ...-.+|++.|++.++|++|....=|| .+....+.+++++.|++
T Consensus 297 kEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiP 366 (431)
T TIGR01918 297 KEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIP 366 (431)
T ss_pred HcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC
Confidence 222 1 011 22221 134679999999999999999988777 55566778899888865
No 76
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=72.26 E-value=6.8 Score=39.28 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHH-HHHHHHHcCCCceeec-cccccccCcc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAV-IYEEIRQRGLKVAVAG-IPKTIDNDIP 224 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~-L~~~~~~~~~~i~vvg-IPkTIDNDi~ 224 (472)
...++...+.+.|.++++|||||+..+.. |.+ .. +.+.+| ||.==-||+.
T Consensus 47 ~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~----~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 47 ARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ----LD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc----CC-CCCcEEEEcCcCHHHHH
Confidence 34444455668999999999999986543 322 11 233455 8987777775
No 77
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=71.54 E-value=15 Score=39.71 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=60.3
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
+.+|||+|| ++. ||||-+...+...++..+|+-+.-=. +|=.. ...+-
T Consensus 135 p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~V---------------------QG~~A------~~eIv 182 (440)
T COG1570 135 PKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLV---------------------QGEGA------AEEIV 182 (440)
T ss_pred CCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccc---------------------cCCCc------HHHHH
Confidence 459999998 554 68999988887777765666332211 22100 11233
Q ss_pred HHHHHHHHhC-CcEEEEEcCCCcHHHHHHHHHHHHHc---CCCceeec
Q 012056 171 KIVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVAG 214 (472)
Q Consensus 171 ~i~~~l~~~~-Id~LivIGGdgs~~~a~~L~~~~~~~---~~~i~vvg 214 (472)
+.++.+.+.+ +|.|||.=|-||..--..+.+|...+ ..+||||.
T Consensus 183 ~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 183 EAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 4455555555 99999999999999887777764443 45677763
No 78
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=71.47 E-value=7.9 Score=41.52 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=67.3
Q ss_pred CCeeEEEEccCCCCCchhH-HHHH--HHHHHHHh------cCCcEEEEEccccccccc----CCeeccChhHHhhhhhcC
Q 012056 90 DEVHACIVTCGGLCPGLNT-VIRE--IVCGLYHM------YGVSKILGIDGGYRGFYS----KNTINLTPKVVNDIHKRG 156 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa-~Ir~--vv~~~~~~------~~~~~v~Gi~~G~~GL~~----~~~~~L~~~~v~~~~~~G 156 (472)
++.|||++|+||.-|--|. -|.+ +..+..+. ....+..-+|.||.--.- +.+++|+. +..+...|
T Consensus 222 ~~akIALvTsgGivPkgnPd~i~s~~A~~yg~Y~i~~~~~l~~~~~~~~HgGYD~~~~n~Dpn~v~PlD~--LreLe~EG 299 (431)
T TIGR01917 222 SKAKIAIVTSGGIVPKGNPDHIESSSASKYGKYDIDGFDDLSEADHETAHGGHDPTYANEDADRVIPVDV--LRDLEKEG 299 (431)
T ss_pred hhCEEEEEecCCcccCCCCCccccccCCCceEEeCCccCcCCccceEEeccccChHHHhcCCCeeeeHHH--HHHHHHcC
Confidence 3469999999999997776 2321 11110000 001233344556654431 12344332 33332222
Q ss_pred --C----ccc-----ccccC--CCChHHHHHHHHHhCCcEEEEEcCCCc-HHHHHHHHHHHHHcCCCc
Q 012056 157 --G----TIL-----GTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKV 210 (472)
Q Consensus 157 --G----s~L-----GssR~--~~~~~~i~~~l~~~~Id~LivIGGdgs-~~~a~~L~~~~~~~~~~i 210 (472)
| .+. ||++. ...-++|++.|++.++|++|..-.=|| .+....+.+++++.|+++
T Consensus 300 ~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 300 KIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred CcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 1 011 22222 134678999999999999999977776 555667788998888653
No 79
>PRK00861 putative lipid kinase; Reviewed
Probab=70.04 E-value=8.2 Score=38.95 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=47.4
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHH
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~ 242 (472)
..+..++++...+.+.|.++++|||||+..+.. .+.. ..+++..||.==-||.. .++|...-...+.+.
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~~--~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~ 111 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALIG--TDIPLGIIPRGTANAFA---AALGIPDTIEEACRT 111 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHhc--CCCcEEEEcCCchhHHH---HHcCCCCCHHHHHHH
Confidence 346677777777888999999999999876542 2222 24667888987778875 466766544444443
No 80
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.82 E-value=1e+02 Score=29.31 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCcEEEEEcCCC
Q 012056 170 SKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdg 191 (472)
.+.++.+...++|++++.+.+.
T Consensus 46 ~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 46 AAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred HHHHHHHHHcCCCEEEEecCCc
Confidence 4566777788999999988764
No 81
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=68.97 E-value=1.1e+02 Score=29.05 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=62.8
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHHH
Q 012056 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (472)
Q Consensus 94 iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (472)
||++..--+.|-.+..+.++.+.+.. ++ .++.-+. +..........+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRA-HG-YQVLVCN-------------------------------SDNDPEKEKEYL 48 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEEEc-------------------------------CCCCHHHHHHHH
Confidence 56666555678888888888877643 22 2322000 000011234567
Q ss_pred HHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHHHHHHhhhc
Q 012056 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAINAAHVEAES 252 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~~i~~~A~s 252 (472)
+.|...++|++++.+.+..-. .+ +.+.+.+ +|+|.+ |++++... .++|+|-- +....+.+.+... +
T Consensus 49 ~~l~~~~~dgiii~~~~~~~~---~l-~~~~~~~--ipvV~~----~~~~~~~~~~~v~~d~~-~~g~~~~~~l~~~--g 115 (267)
T cd06283 49 ESLLAYQVDGLIVNPTGNNKE---LY-QRLAKNG--KPVVLV----DRKIPELGVDTVTLDNY-EAAKEAVDHLIEK--G 115 (267)
T ss_pred HHHHHcCcCEEEEeCCCCChH---HH-HHHhcCC--CCEEEE----cCCCCCCCCCEEEeccH-HHHHHHHHHHHHc--C
Confidence 778889999999998765432 12 3333334 456643 45543322 34665531 1223333444322 4
Q ss_pred CcceEEEE
Q 012056 253 IENGIGVV 260 (472)
Q Consensus 253 ~~~rv~iV 260 (472)
+ +++.++
T Consensus 116 ~-~~i~~l 122 (267)
T cd06283 116 Y-ERILFV 122 (267)
T ss_pred C-CcEEEE
Confidence 3 456666
No 82
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=68.73 E-value=18 Score=36.99 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHH-HHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh-HHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKG-AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT-AVEEAQRAIN 244 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~-a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT-A~~~~~~~i~ 244 (472)
+..++++.+...+.|.+++.|||||... +..|. +.+.+. +--||.==-||+. +++|... ....+.+.+.
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGDGTv~evingl~----~~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i~ 116 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA----GTDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELIK 116 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh----cCCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHHH
Confidence 6788888888889999999999999874 34443 233332 6678877777765 4666666 3555555443
No 83
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=68.24 E-value=8.4 Score=39.00 Aligned_cols=44 Identities=34% Similarity=0.500 Sum_probs=33.9
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~ 237 (472)
...+.++++|||||+-.+..... ..+++|+||= --++||-|-.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin----------~G~lGFLt~~~ 97 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGIN----------LGHLGFLTDFE 97 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEe----------CCCcccccccC
Confidence 67899999999999987776543 2357788873 23899998876
No 84
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=68.12 E-value=8.5 Score=39.60 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH--cCCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ--RGLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~--~~~~i~vvgIPkT 218 (472)
..+++++.+++.+.|.++-|||--+++.|..++-.... ..-.+++|.||-|
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 46788999999999999999999999998876543221 1224789999988
No 85
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=67.78 E-value=1.1e+02 Score=28.97 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
....++.|...++|++++++.+.+... .+.+++.+ +|+|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 346677788889999999987654322 22333444 456654
No 86
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=67.73 E-value=9.2 Score=39.48 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
+..+++++.+++.+.|.+|-|||--.++.|..++. . + .+++|.||-|..+|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~-~--~--~~p~i~iPTT~~t~s~~ 118 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAY-K--L--GIPFISVPTAASHDGIA 118 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHH-h--c--CCCEEEecCcccCCccc
Confidence 34678888999999999999999999998887763 2 2 46799999998766443
No 87
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=66.94 E-value=5.9 Score=41.07 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.++++++ |.++-|||--.++.|..++... .++ +++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 70 TLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 46788999999998 9999999998888887665422 234 6799999997
No 88
>PRK13057 putative lipid kinase; Reviewed
Probab=66.73 E-value=11 Score=37.85 Aligned_cols=84 Identities=24% Similarity=0.402 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
+.+++++. ...+.|.++++|||||+..+.. .+.. .++++..||.==-||+. +++|...-...+. +.+.
T Consensus 39 ~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~---~l~~--~~~~lgiiP~GT~Ndfa---r~Lg~~~~~~~a~---~~i~ 106 (287)
T PRK13057 39 DLSEVIEA-YADGVDLVIVGGGDGTLNAAAP---ALVE--TGLPLGILPLGTANDLA---RTLGIPLDLEAAA---RVIA 106 (287)
T ss_pred HHHHHHHH-HHcCCCEEEEECchHHHHHHHH---HHhc--CCCcEEEECCCCccHHH---HHcCCCCCHHHHH---HHHH
Confidence 45555555 3567899999999999876542 2222 35678889987788875 3455543333333 3332
Q ss_pred HhhhcCcceEEEEEecCCC
Q 012056 248 VEAESIENGIGVVKLMGRY 266 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvMGr~ 266 (472)
.++.+++-+.++-+|+
T Consensus 107 ---~~~~~~vD~g~~~~~~ 122 (287)
T PRK13057 107 ---TGQVRRIDLGWVNGHY 122 (287)
T ss_pred ---cCCeEEeeEEEECCEE
Confidence 1223456666665543
No 89
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=66.64 E-value=1.2e+02 Score=28.77 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCch--hHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFD--TAVEEAQRAINA 245 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~Gfd--TA~~~~~~~i~~ 245 (472)
..++++.+...++|++++.+.+.+-. +.+++.+.+ +|+|.+ |++.+... .++++| .+.+.+++.+.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 34667778889999999998654432 223333344 456654 33333222 234443 455555544432
Q ss_pred HHHhhhcCcceEEEEE
Q 012056 246 AHVEAESIENGIGVVK 261 (472)
Q Consensus 246 i~~~A~s~~~rv~iVE 261 (472)
..+ ++|.++-
T Consensus 114 -----~g~-~~i~~l~ 123 (268)
T cd06298 114 -----NGH-KKIAFIS 123 (268)
T ss_pred -----cCC-ceEEEEe
Confidence 243 5677774
No 90
>PRK12361 hypothetical protein; Provisional
Probab=66.24 E-value=15 Score=40.45 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCcc
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (472)
..+..++++...+.+.|.++++|||||...+.. .+. +.++++-.||.==-||+.
T Consensus 283 ~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~--~~~~~lgiiP~GTgNdfA 336 (547)
T PRK12361 283 EISAEALAKQARKAGADIVIACGGDGTVTEVAS---ELV--NTDITLGIIPLGTANALS 336 (547)
T ss_pred CccHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHh--cCCCCEEEecCCchhHHH
Confidence 345677777777788999999999999876542 222 234667888987788876
No 91
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=65.83 E-value=7.6 Score=40.51 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
..+++++.+++.++ |.++.|||--.++.|..++-.. .+ .+++|.||-|. +..+|.++|--+++
T Consensus 77 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--gip~i~IPTT~---~s~~ds~~~~k~~i 142 (358)
T PRK00002 77 TLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MR--GIRFIQVPTTL---LAQVDSSVGGKTGI 142 (358)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cC--CCCEEEcCchh---hhccccCcCCceec
Confidence 46788888999887 9999999999999887776321 23 46799999996 33445555544443
No 92
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=65.63 E-value=6.2 Score=41.06 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc--------------CCCceeeccccccccC
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--------------GLKVAVAGIPKTIDND 222 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~--------------~~~i~vvgIPkTIDND 222 (472)
.+.+++++.++++++|.+|-|||--+++.|+.++-..... +-.+++|.||-|--+-
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtG 134 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTG 134 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSS
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccc
Confidence 3578999999999999999999999999998887654311 1127899999885543
No 93
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=65.42 E-value=9.6 Score=39.47 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (472)
+..+++++.+++.++|.+|-|||--.++.|..++... .+|+|.||-|-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 3577889999999999999999999999988887542 56799999996543
No 94
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=65.10 E-value=1.5e+02 Score=29.29 Aligned_cols=86 Identities=13% Similarity=0.219 Sum_probs=47.9
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCChHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSK 171 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~~ 171 (472)
+||++...=..|-...+++++-+.+.. ++ .++.- ++.+.. .....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~~-------------------------------~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAIY-------------------------------VGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEEE-------------------------------ECCCCCCHHHHHH
Confidence 477777555567777888888777643 33 23220 111111 122446
Q ss_pred HHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
.++.+...++|++++.+.+.+ ....+.+.+.+.++ |||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~i--PvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAGI--KVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCCC--eEEEE
Confidence 677777889999999875532 12233344444454 45543
No 95
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=64.36 E-value=12 Score=38.94 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceeeccccccccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (472)
..+++++.+++.+.|.+|-|||--.++.|+.++-..... .-.+++|.||-|-..+
T Consensus 68 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 68 NVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 467889999999999999999999999988776433110 1146899999885544
No 96
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=64.00 E-value=11 Score=38.91 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
+.+++++.+++++.|.+|-|||--+++.|+.++-. ..+|+|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTa 111 (351)
T cd08170 65 EIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIA 111 (351)
T ss_pred HHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcc
Confidence 46788888999999999999999999999888743 257899999984
No 97
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=61.25 E-value=14 Score=38.21 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
..+++++.+++.+.|.+|-|||--.++.|..++-.. ++++|.||-|-.
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtat 112 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLS 112 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCch
Confidence 467888999999999999999999999988876432 577999998853
No 98
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=61.24 E-value=1.5e+02 Score=28.03 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=42.6
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHHH
Q 012056 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (472)
Q Consensus 94 iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (472)
||++..+-..|.....++++-+.+.. ++ .+++-+. +.....+..+++
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEA-AG-YQLLLGN-------------------------------TGYSPEREEELL 48 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHH-cC-CEEEEec-------------------------------CCCCchhHHHHH
Confidence 67777777778888888888776643 22 2332111 001112345778
Q ss_pred HHHHHhCCcEEEEEcCCCc
Q 012056 174 DSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs 192 (472)
+.|...++|++++.+-+.+
T Consensus 49 ~~l~~~~vdgiii~~~~~~ 67 (268)
T cd01575 49 RTLLSRRPAGLILTGLEHT 67 (268)
T ss_pred HHHHHcCCCEEEEeCCCCC
Confidence 8888999999999987755
No 99
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=61.06 E-value=1.8e+02 Score=28.97 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=39.4
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
..||++...-..|-...++.++-+.+.. ++ .+++-.. +........+
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HG-YQTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CC-CEEEEec-------------------------------CCCCHHHHHH
Confidence 4889988655567777788887776642 22 2332100 0000011235
Q ss_pred HHHHHHHhCCcEEEEEcCC
Q 012056 172 IVDSIQDRGINQVYIIGGD 190 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGd 190 (472)
.++.+...++|++|+.+-+
T Consensus 111 ~~~~~~~~~vdgiI~~~~~ 129 (331)
T PRK14987 111 RLESMLSWNIDGLILTERT 129 (331)
T ss_pred HHHHHHhcCCCEEEEcCCC
Confidence 5677888999999998644
No 100
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=60.80 E-value=8.8 Score=40.17 Aligned_cols=64 Identities=33% Similarity=0.482 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHhCC----cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH
Q 012056 168 DTSKIVDSIQDRGI----NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (472)
Q Consensus 168 ~~~~i~~~l~~~~I----d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~ 237 (472)
..+++++.+.+.++ |.++.|||--.+..|..++-.. .+| +++|.||-|. +..+|.+.|.-++++
T Consensus 72 ~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i~ 139 (354)
T cd08199 72 TVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGVN 139 (354)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEEe
Confidence 46788888999998 9999999998888887766422 234 6799999996 333455555555543
No 101
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=60.25 E-value=15 Score=38.26 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
..+++++.+++.+.|.+|-|||--.++.|..++ + .+ .+++|.||-|..
T Consensus 75 ~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~r--gip~I~IPTT~~ 122 (350)
T PRK00843 75 EVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RL--GIPFISVPTAAS 122 (350)
T ss_pred HHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hc--CCCEEEeCCCcc
Confidence 467889999999999999999998888887776 2 13 467999999964
No 102
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=59.39 E-value=9.8 Score=39.34 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++.+++++. |.++.|||--.+..|..++... .+ .+++|.||-|.
T Consensus 66 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~--~~p~i~VPTT~ 117 (344)
T TIGR01357 66 TVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MR--GIRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-cc--CCCEEEecCch
Confidence 46788888999888 8999999999999888776322 23 46799999997
No 103
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=59.09 E-value=19 Score=37.80 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcC--------------CCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG--------------LKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~--------------~~i~vvgIPkTID 220 (472)
..+++++.+++.+.|.+|-|||--+++.|+.++-....-+ -.+++|.||-|--
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 137 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAG 137 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCc
Confidence 4678899999999999999999999999887764432111 1267899998853
No 104
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=58.65 E-value=18 Score=38.12 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE 202 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~ 202 (472)
..+++++.+++++.|.+|-|||--.++.|..++-.
T Consensus 72 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 72 QVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 46788999999999999999999999998877653
No 105
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=58.18 E-value=1.7e+02 Score=27.78 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCC
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdg 191 (472)
..++++.|...++|++++.+.+.
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~ 66 (264)
T cd06274 44 ERETVETLIARQVDALIVAGSLP 66 (264)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Confidence 45788889999999999998764
No 106
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=58.07 E-value=15 Score=37.51 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (472)
..+++++.+++.+.|.+|-|||--.++.|..++-... + .+++|.||-|...
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 4678888899999999999999999998887765432 2 4679999988554
No 107
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=56.85 E-value=20 Score=37.50 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~ 200 (472)
..+++++.+++.++|.+|-|||--+++.|+.++
T Consensus 69 ~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia 101 (375)
T cd08179 69 TVLKGAEAMREFEPDWIIALGGGSPIDAAKAMW 101 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999998876
No 108
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=56.81 E-value=14 Score=38.66 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHhCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCc
Q 012056 168 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGF 232 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~Gf 232 (472)
..+++++.+.++++| .++.|||--.+..|..++-.. .++ +++|.||-|. +..+|.++|-
T Consensus 69 ~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl---la~~da~i~~ 130 (355)
T cd08197 69 TLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL---LAQSDSVLSL 130 (355)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc---cccccccccC
Confidence 467889999999998 999999988888777665321 234 6799999985 2344444443
No 109
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.74 E-value=46 Score=31.00 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=52.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCCh
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (472)
+..||.++ |+ .|+ ++..+...+...|++.++.|.++||-+..+.. +.++.|...+-.++=.+=+.+..
T Consensus 45 ~~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~------~i~~~I~~~~pdiv~vglG~PkQ 112 (171)
T cd06533 45 KGLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEEE------EIIERINASGADILFVGLGAPKQ 112 (171)
T ss_pred cCCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhHH------HHHHHHHHcCCCEEEEECCCCHH
Confidence 34688777 33 454 44444444555689999999999998743211 24566666655544333333445
Q ss_pred HHHHHHHHH-hCCcEEEEEcC
Q 012056 170 SKIVDSIQD-RGINQVYIIGG 189 (472)
Q Consensus 170 ~~i~~~l~~-~~Id~LivIGG 189 (472)
|+.+..+++ .+-..++.+||
T Consensus 113 E~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 113 ELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHHCCCCEEEEece
Confidence 555544444 45677888888
No 110
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=56.65 E-value=13 Score=38.85 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHhCC---cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
..+++++.+.+.+. |.++.|||--++..|..++- .-.+|. +.+.||-|.- ...|-++|.-|++|.
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~-~~~rgi--~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVAS-IYMRGV--SWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHH-HHHcCC--CeEEecccHH---HhhhccccccceecC
Confidence 46788999999999 89999999988888776654 233564 6899999852 345667777777764
No 111
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=56.33 E-value=20 Score=37.61 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkT 218 (472)
..+++++.++++++|.+|-|||--.++.|+.++-.... ....+|+|.||-|
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 68 SVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 46788999999999999999999999998877521110 1234789999988
No 112
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=55.73 E-value=96 Score=34.69 Aligned_cols=95 Identities=24% Similarity=0.289 Sum_probs=64.3
Q ss_pred HHHHHHHHHhC--CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 170 ~~i~~~l~~~~--Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
++++..++..| ||++++-.|--++.-|..|-+++..-|++ -++-=|.||| +++.+ -+|
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe--------------qI~sv----i~I- 170 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE--------------QIRSV----IRI- 170 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH--------------HHHHH----HHH-
Confidence 45666666655 99999999999999999999998777765 3555677765 22221 122
Q ss_pred HhhhcCcceEEEEEecCCCcc-h----------HHHHHhhccCCcceEecC
Q 012056 248 VEAESIENGIGVVKLMGRYCG-F----------IAMYATLGSRDVDCCLIP 287 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvMGr~~G-~----------LA~~aaLA~~~ad~ilIP 287 (472)
|..++.-=.|+..-|+++| | ||+++.|-+ .+|++++-
T Consensus 171 --Aka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~v 218 (717)
T COG4981 171 --AKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCV 218 (717)
T ss_pred --HhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEe
Confidence 3333333346666665554 2 899999988 68877763
No 113
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=55.39 E-value=17 Score=37.74 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (472)
..+++++.+++.+.|.+|-|||--.++.|..++.. ..+|+|.||-|-..+-
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgs 115 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCA 115 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCc
Confidence 46788899999999999999999999998888743 2467999999854443
No 114
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=54.98 E-value=1.9e+02 Score=28.99 Aligned_cols=22 Identities=0% Similarity=-0.019 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCcEEEEEcCCC
Q 012056 170 SKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdg 191 (472)
.+.++.|...++|++++.+.+-
T Consensus 105 ~~~i~~l~~~~vdgiIi~~~~~ 126 (343)
T PRK10727 105 RQAIEQLIRHRCAALVVHAKMI 126 (343)
T ss_pred HHHHHHHHhcCCCEEEEecCCC
Confidence 3566778889999999997643
No 115
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=54.43 E-value=21 Score=37.85 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcC-------------CCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-------------LKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~-------------~~i~vvgIPkT 218 (472)
..++.++.+++.+.|.+|-|||--+++.|+.++-....-+ -.+|+|.||-|
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 4678889999999999999999999999987754321101 13578888876
No 116
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=54.32 E-value=21 Score=37.34 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
..+++++.+++++.|.+|-|||--.++.|..++-. ..+|+|.||-|
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTt 117 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTI 117 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCc
Confidence 46688899999999999999999999988877632 24679999998
No 117
>PLN02834 3-dehydroquinate synthase
Probab=54.28 E-value=12 Score=40.31 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHhCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 168 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
..+++++.+.++++| .+|.|||--.++.|..++-.. .+| +++|.||-|. +..+|.+.|--+++
T Consensus 148 ~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl---lA~vDss~ggK~~i 213 (433)
T PLN02834 148 TLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV---MAQVDSSVGGKTGV 213 (433)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC---CeEEecCCCceeEE
Confidence 467888889999998 999999998888887654321 234 6799999995 33445555544444
No 118
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=54.18 E-value=26 Score=37.06 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~ 200 (472)
..+++++.+++.++|.+|-|||--+++.|..++
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467888999999999999999999999988776
No 119
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=53.84 E-value=22 Score=37.30 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc---------------CCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---------------GLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~---------------~~~i~vvgIPkT 218 (472)
..+++++.+++.+.|.+|-|||--.++.|+.++-....- ...+|+|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 74 VVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 467889999999999999999999999987765322110 123678999988
No 120
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=53.61 E-value=2.5e+02 Score=28.24 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=41.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCChH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~ 170 (472)
..||++...-..|-...++.++-..+.. ++ ..++ + .++.. .....
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~-~g-y~~~---------~-----------------------~~~~~~~~~~~ 105 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQ-HQ-KYVL---------I-----------------------GNSYHEAEKER 105 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEE---------E-----------------------EcCCCChHHHH
Confidence 4799998766678888888888776643 22 2222 0 00111 11233
Q ss_pred HHHHHHHHhCCcEEEEEcCC
Q 012056 171 KIVDSIQDRGINQVYIIGGD 190 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGd 190 (472)
+.++.|...++|++|+.+..
T Consensus 106 ~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 106 HAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 56777888999999999754
No 121
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=53.04 E-value=23 Score=36.95 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-----------------cCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-----------------RGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-----------------~~~~i~vvgIPkTI 219 (472)
..+++++.++++++|.+|-|||--+++.|..++-.... ..-.+|+|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 46788899999999999999999999998877643210 01247899999883
No 122
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.73 E-value=2.1e+02 Score=27.21 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=40.6
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHHH
Q 012056 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (472)
Q Consensus 94 iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (472)
|||+...-..|-.+..++++-..+.. ++ .+++-+ -+....+...+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVLLC-------------------------------NTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHHHH
Confidence 67777666677777888887776643 22 232200 0111122345778
Q ss_pred HHHHHhCCcEEEEEcCC
Q 012056 174 DSIQDRGINQVYIIGGD 190 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGd 190 (472)
+.|...++|++++.+..
T Consensus 49 ~~l~~~~vdgiIi~~~~ 65 (273)
T cd06292 49 EDLLARGVRGVVFISSL 65 (273)
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999854
No 123
>PRK06186 hypothetical protein; Validated
Probab=52.59 E-value=26 Score=34.71 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCc--HHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHH
Q 012056 180 GINQVYIIGGDGT--QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQR 241 (472)
Q Consensus 180 ~Id~LivIGGdgs--~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~ 241 (472)
++|+++|-||+|. ..|.....++++++ |+|.--.|+|++.|+=..+.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~---------------~iP~LGIClGmQ~avIe~ar 101 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFAREN---------------GIPFLGTCGGFQHALLEYAR 101 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHc---------------CCCeEeechhhHHHHHHHHh
Confidence 5799999999997 34445555665544 44444459999987755544
No 124
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=52.28 E-value=26 Score=36.51 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH------------cCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------------RGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~------------~~~~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--+++.|+.++-.... ..-.+|+|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 71 TIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 46788999999999999999999999998876532110 12246789999884
No 125
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=52.17 E-value=26 Score=36.74 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (472)
..+++++.+++.++|.+|-|||--.++.|..++-.... ....+++|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 71 VVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 46788999999999999999999999998877643210 01246789998874
No 126
>PRK15138 aldehyde reductase; Provisional
Probab=51.23 E-value=25 Score=37.16 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE 201 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~ 201 (472)
..+++++.+++.+.|.+|-|||--+++.|+.++-
T Consensus 73 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 73 TLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 5778899999999999999999999999987764
No 127
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.94 E-value=2.2e+02 Score=26.94 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
..+.++.|...++|++++...+..-. ..+.+.+.+ +|||.+
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~i 84 (270)
T cd06296 44 ERQWVERLSARRTDGVILVTPELTSA----QRAALRRTG--IPFVVV 84 (270)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCChH----HHHHHhcCC--CCEEEE
Confidence 44677888899999999988764422 123333334 556654
No 128
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=49.74 E-value=26 Score=36.71 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH------------------cCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------------------RGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~------------------~~~~i~vvgIPkTI 219 (472)
..+++++.+++.++|.+|-|||--+++.|+.++-.... ..-.+|+|.||-|-
T Consensus 71 ~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 71 TVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 46788888999999999999999999998877543210 01246789999873
No 129
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.59 E-value=17 Score=31.91 Aligned_cols=42 Identities=31% Similarity=0.476 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCC---ceeeccccccccCcc
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLK---VAVAGIPKTIDNDIP 224 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~---i~vvgIPkTIDNDi~ 224 (472)
..|.++++|||||...+. +.+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vv---n~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVL---NALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHH---HHHHhcccccCCCcEEEeCCCChhHHH
Confidence 467999999999987653 222222322 678889987789885
No 130
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.20 E-value=33 Score=36.17 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--+++.|+.++-.... ....+|+|.||-|=
T Consensus 76 ~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 76 NVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 46789999999999999999999999999887632110 01246788898773
No 131
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.02 E-value=2.4e+02 Score=26.79 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCcEEEEEcCCC
Q 012056 170 SKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdg 191 (472)
..+.+.+...++|++++.+.+.
T Consensus 48 ~~~~~~l~~~~vdgiii~~~~~ 69 (268)
T cd06277 48 FELPSFLEDGKVDGIILLGGIS 69 (268)
T ss_pred HHHHHHHHHCCCCEEEEeCCCC
Confidence 3566778889999999998654
No 132
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=48.93 E-value=3e+02 Score=27.82 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=52.5
Q ss_pred CCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC-
Q 012056 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH- 167 (472)
Q Consensus 89 ~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~- 167 (472)
.+..+||++...-.-|-.+.++.++.+.+.. +++..++ +.++....
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 4456888888656678888888888777643 2221221 11112111
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
...+.++.|...++|++++.+.+..... ...+.+++.+++ +|.+
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~l~~l~~~giP--vV~v 112 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP--TVIEKARGQDVP--VVFF 112 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH--HHHHHHHHCCCc--EEEE
Confidence 1235677788999999999987754332 222344445554 5544
No 133
>PRK10586 putative oxidoreductase; Provisional
Probab=48.62 E-value=22 Score=37.32 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCch
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD 233 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~Gfd 233 (472)
.+++.+..+ .+.|.+|-|||--+++.|+.++.. .++|+|.||-|-.+|-+.|..++-++
T Consensus 76 v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~~ 134 (362)
T PRK10586 76 VAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWYN 134 (362)
T ss_pred HHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEEC
Confidence 445555443 578999999999999999988753 35789999999998887776666554
No 134
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=48.58 E-value=2.4e+02 Score=26.65 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (472)
...+.+.+..+++|++++...+.... .+.+.+.+.+ +|+|.+=
T Consensus 45 ~~~~~~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~--ipvv~i~ 87 (270)
T cd01545 45 AERVRALLQRSRVDGVILTPPLSDNP---ELLDLLDEAG--VPYVRIA 87 (270)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCcc---HHHHHHHhcC--CCEEEEe
Confidence 45667778889999999998874322 2223333344 4566553
No 135
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=48.50 E-value=1.3e+02 Score=30.66 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCccccccc-CCCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR-GGHD 168 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR-~~~~ 168 (472)
+..+||++..+-..|--+.+++++.+.+.. ++ .++. +.++. ....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 457999999888889899999999887753 22 2332 11111 1122
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+.++.|...++|++++.+.+.+.. ....+.+.+.+ +|||.+-..+
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~ 116 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMI 116 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCC
Confidence 44677888899999999997653311 12223344444 5577664444
No 136
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=48.47 E-value=2.5e+02 Score=26.80 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (472)
+++.+.+.+.++|++++.+.+..-. ..+++.+.+ +|||.+-
T Consensus 54 ~~~~~~l~~~~~dgiii~~~~~~~~----~~~~~~~~~--ipvV~~~ 94 (275)
T cd06295 54 DWLARYLASGRADGVILIGQHDQDP----LPERLAETG--LPFVVWG 94 (275)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEEC
Confidence 4566677788999999998765422 123444444 5566543
No 137
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=48.28 E-value=34 Score=35.91 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--.++.|+.++-.... ....+|+|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 46788899999999999999999999998877532110 11346788888774
No 138
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=47.95 E-value=35 Score=31.90 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.4
Q ss_pred Cceeeccccc
Q 012056 209 KVAVAGIPKT 218 (472)
Q Consensus 209 ~i~vvgIPkT 218 (472)
.+||||+|--
T Consensus 80 ~lPViGVPv~ 89 (162)
T COG0041 80 PLPVIGVPVQ 89 (162)
T ss_pred CCCeEeccCc
Confidence 5788888854
No 139
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.95 E-value=1.4e+02 Score=30.44 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=51.6
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..||||+|| -...|+..+++.+-+ .+...+++-+.-=+ +|=.. ..++-
T Consensus 14 p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~v---------------------QG~~A------~~~I~ 61 (319)
T PF02601_consen 14 PKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASV---------------------QGEGA------AASIV 61 (319)
T ss_pred CCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEeccc---------------------cccch------HHHHH
Confidence 459999998 456667777766544 34433444222111 11100 01222
Q ss_pred HHHHHHHHh----CCcEEEEEcCCCcHHHHHHHHHHHHHc---CCCceee-ccccc
Q 012056 171 KIVDSIQDR----GINQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVA-GIPKT 218 (472)
Q Consensus 171 ~i~~~l~~~----~Id~LivIGGdgs~~~a~~L~~~~~~~---~~~i~vv-gIPkT 218 (472)
+.++.+.+. .+|.++++=|-||...-..+.++.-.+ ..++||| ||=-.
T Consensus 62 ~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe 117 (319)
T PF02601_consen 62 SALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHE 117 (319)
T ss_pred HHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCC
Confidence 334444443 399999999999987765554442222 4455555 34333
No 140
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=47.19 E-value=19 Score=39.52 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=68.8
Q ss_pred EEEEEcccccccccCCeeccChhHHhhhhhc--CCcccccccCC-----CChHHHHHHHHHhCC---cEEEEEcCCCcHH
Q 012056 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKR--GGTILGTSRGG-----HDTSKIVDSIQDRGI---NQVYIIGGDGTQK 194 (472)
Q Consensus 125 ~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~--GGs~LGssR~~-----~~~~~i~~~l~~~~I---d~LivIGGdgs~~ 194 (472)
.|+-...+.... .+..+-++.+.|..++.. .-..+--.-++ ...+++++.|.++++ |.++.|||--...
T Consensus 173 ~v~~~~~~~~~~-~~~~~ii~d~~v~~ly~~~l~~~~~~~~~ge~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D 251 (488)
T PRK13951 173 LVKIILGGFKRV-RNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTD 251 (488)
T ss_pred eEEEeccccccC-CCeEEEEECCcHHHHHHHhhcccEEEecCCCCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHH
Confidence 444333444433 345566677777664422 00111000111 236789999999999 9999999988877
Q ss_pred HHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 195 GAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 195 ~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
.|.-++.. -.+| |+.|.||-|+- ...|.|+|-=||+|.
T Consensus 252 ~agf~A~~-y~RG--i~~i~vPTTll---a~vDssiggK~~vn~ 289 (488)
T PRK13951 252 FTGFVAST-FKRG--VGLSFYPTTLL---AQVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHH-HhcC--CCeEecCccHH---HHHhcCCCCCeeeeC
Confidence 76655543 3356 45999999984 667889999888876
No 141
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=47.05 E-value=31 Score=35.72 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
..+++++..++.+.|.++-|||--.++.|+.++-. +.+|+|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~ 112 (345)
T cd08171 66 NVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIA 112 (345)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcc
Confidence 45677888889999999999999999998887653 246799999884
No 142
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.82 E-value=2.6e+02 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
+.+.+.+.+.++|++|+...+..- .+.+.+.+.+ +|+|.+
T Consensus 50 ~~~~~~~~~~~~dgiii~~~~~~~----~~~~~~~~~~--ipvV~~ 89 (270)
T cd06294 50 EEVKKMIQQKRVDGFILLYSREDD----PIIDYLKEEK--FPFVVI 89 (270)
T ss_pred HHHHHHHHHcCcCEEEEecCcCCc----HHHHHHHhcC--CCEEEE
Confidence 344445667789999999754432 1233444445 446643
No 143
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=46.51 E-value=16 Score=31.96 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhC-CcEEEEEcCCCcHHHHHHHHHHHHHcCC--CceeeccccccccCccCcCcccCchhHHHH
Q 012056 169 TSKIVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQRGL--KVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 169 ~~~i~~~l~~~~-Id~LivIGGdgs~~~a~~L~~~~~~~~~--~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
.+.+....+..+ .+.++++|||||+..+. +.+.+... .+++.-||.==-||+. +++|+.+-...
T Consensus 42 ~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv---~~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 42 AEALARILALDDYPDVIVVVGGDGTLNEVV---NGLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHHTTS-SEEEEEESHHHHHHHH---HHHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred HHHHHHHHhhccCccEEEEEcCccHHHHHH---HHHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 344444333333 48999999999987643 33333332 4588999987777775 36666665555
No 144
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.25 E-value=35 Score=35.85 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHH--------Hc-------CCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR--------QR-------GLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~--------~~-------~~~i~vvgIPkT 218 (472)
..+++++.+++.+.|.+|-|||--+++.|+.++-... ++ .-.+++|.||-|
T Consensus 75 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 75 VVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 4678889999999999999999999999876642211 00 123688999988
No 145
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=45.67 E-value=30 Score=36.66 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 169 TSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 169 ~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
.+++.+.+.+++.+ .++.|||-=..+.|..++.. ..+| +++|.||-| =+..+|.++|--|++|.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 56888999999998 99999998888877766543 2345 679999999 23556777777766655
No 146
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=45.63 E-value=3.1e+02 Score=27.07 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
..+.++.|..+++|++++...+... .....+++++.++ |||.
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~gi--PvV~ 87 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKNI--PVIF 87 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCCC--CEEE
Confidence 3467888899999999998866432 1223344444454 4554
No 147
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=44.95 E-value=1.3e+02 Score=28.89 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=24.5
Q ss_pred hHHHHH-HHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceee
Q 012056 169 TSKIVD-SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVA 213 (472)
Q Consensus 169 ~~~i~~-~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vv 213 (472)
.++.++ .+..+++|++++.+.+-... ..+.+.+.++++-++
T Consensus 43 ~~~~~~~~l~~~~vdgvi~~~~~~~~~----~~~~l~~~~iPvv~~ 84 (269)
T cd06297 43 LKRYLESTTLAYLTDGLLLASYDLTER----LAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEecCccChH----HHHHHhhcCCCEEEE
Confidence 344554 58889999999998764432 233444455543333
No 148
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.70 E-value=1.6e+02 Score=26.62 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=68.0
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHh-hhhhcCCccccccc-C---
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVN-DIHKRGGTILGTSR-G--- 165 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~-~~~~~GGs~LGssR-~--- 165 (472)
+.|+.+.+.||+.=.+..-+-+.. + . ..|.+|+ |.|. ....+.+- -.....-.+++-|- .
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--l-r-~~G~eVi-----~LG~------~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--L-T-EAGFEVI-----NLGV------MTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--H-H-HCCCEEE-----ECCC------CCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 347888888888776655443332 2 2 2334555 2231 23333332 33333333444332 2
Q ss_pred CCChHHHHHHHHHhCC-cEEEEEcCCCcHHH--HHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHH
Q 012056 166 GHDTSKIVDSIQDRGI-NQVYIIGGDGTQKG--AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~I-d~LivIGGdgs~~~--a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~ 242 (472)
.....++++.|++.+. +..+++||.-+... .....+.+++.|+ |..|+-+|-.+.+++.
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~------------------~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF------------------DRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC------------------CEEECcCCCHHHHHHH
Confidence 2357888899999877 66789999764321 2334455566564 4455556666666666
Q ss_pred HHHH
Q 012056 243 INAA 246 (472)
Q Consensus 243 i~~i 246 (472)
+++.
T Consensus 130 l~~~ 133 (137)
T PRK02261 130 LKKD 133 (137)
T ss_pred HHHH
Confidence 6554
No 149
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=44.47 E-value=46 Score=34.77 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHh---CCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceeeccccccc
Q 012056 168 DTSKIVDSIQDR---GINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~---~Id~LivIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTID 220 (472)
..+++++.+++. ++|.++-|||--+++.|+.++-..... .-.+++|.||-|--
T Consensus 66 ~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaG 134 (347)
T cd08184 66 QIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSG 134 (347)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCc
Confidence 467888888888 999999999999999998876432210 11356888887743
No 150
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=44.46 E-value=37 Score=35.61 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE 201 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~ 201 (472)
..+++++.+++.+.|.+|-|||--.++.|..++-
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~ 96 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAA 96 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHH
Confidence 4678888899999999999999999999887754
No 151
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=44.30 E-value=40 Score=34.61 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHh-CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC
Q 012056 167 HDTSKIVDSIQDR-GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 167 ~~~~~i~~~l~~~-~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
...+++.+.+++. +.|.+|-|||--.++.|..++.. + .+++|.||-|..+|-..
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~--~~p~i~vPTt~~tgs~~ 115 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---R--GIPLSVPTTNLNDDGIA 115 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---c--CCCEEEecCccccCccc
Confidence 4567777777777 49999999999999988877652 3 46799999998775443
No 152
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=44.14 E-value=43 Score=34.98 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-----------------CCCceeecccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-----------------GLKVAVAGIPKTIDN 221 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-----------------~~~i~vvgIPkTIDN 221 (472)
..+++++.+++.+.|.+|-|||--.++.|+.++-..... .-.+++|.||-|--.
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagt 139 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGT 139 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCch
Confidence 467888999999999999999999999988775432100 113678889887543
No 153
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=43.86 E-value=2.3e+02 Score=26.68 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=40.2
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHHH
Q 012056 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (472)
Q Consensus 94 iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (472)
|||+...-..|-.+..+.++-+.+.. ++ .++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67777766777777777777666532 22 2221 011111122234666
Q ss_pred HHHHHhCCcEEEEEcCCCc
Q 012056 174 DSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs 192 (472)
+.|...++|++++.+.+.+
T Consensus 49 ~~l~~~~~dgii~~~~~~~ 67 (259)
T cd01542 49 ELLARQKVDGIILLATTIT 67 (259)
T ss_pred HHHHhcCCCEEEEeCCCCC
Confidence 7788899999999987654
No 154
>PRK05670 anthranilate synthase component II; Provisional
Probab=43.65 E-value=34 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHhCCcEEEEEcCCCcHHHHH
Q 012056 176 IQDRGINQVYIIGGDGTQKGAA 197 (472)
Q Consensus 176 l~~~~Id~LivIGGdgs~~~a~ 197 (472)
++.++.|+||+-||.|+...+.
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcc
Confidence 3556799999999999975543
No 155
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=43.60 E-value=61 Score=28.43 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=51.7
Q ss_pred cEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccc----cC-CC-ChHHHHHHHHHhCCcEEEEEcC-CCcHHHH
Q 012056 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS----RG-GH-DTSKIVDSIQDRGINQVYIIGG-DGTQKGA 196 (472)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss----R~-~~-~~~~i~~~l~~~~Id~LivIGG-dgs~~~a 196 (472)
.++++-.+|..--+. .+..++..++..|.. ||-++=|+ +. .+ ...+.++.|.+.++.+|.+--| +-. .--
T Consensus 12 ~~lvaG~~gL~r~V~-~v~v~e~~d~~~~l~-~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP 88 (123)
T PF07905_consen 12 AKLVAGENGLDRPVR-WVHVMEAPDPSDWLR-GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP 88 (123)
T ss_pred CEEecCCccCCCcEE-EEEEeecCCHHHhCC-CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC
Confidence 455554433322222 222344447778854 45444343 22 22 3788999999999999999555 333 333
Q ss_pred HHHHHHHHHcCCCceeecccc
Q 012056 197 AVIYEEIRQRGLKVAVAGIPK 217 (472)
Q Consensus 197 ~~L~~~~~~~~~~i~vvgIPk 217 (472)
..+.+++.+++ +|++-+|.
T Consensus 89 ~~~i~~A~~~~--lPli~ip~ 107 (123)
T PF07905_consen 89 EEIIELADELG--LPLIEIPW 107 (123)
T ss_pred HHHHHHHHHcC--CCEEEeCC
Confidence 45556666655 56899887
No 156
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=42.86 E-value=74 Score=31.88 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=63.2
Q ss_pred eEEEEc-cCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC-CCChH
Q 012056 93 HACIVT-CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (472)
Q Consensus 93 ~iaIlt-sGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~ 170 (472)
||+|+| |+.+-| .... ..++ ..++-++==+.|-.-.+-++++++.+-......+.+-.||-- ..++.
T Consensus 1 Ki~IitDS~~dl~------~~~~----~~~~-i~vvPl~i~~~~~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~ 69 (280)
T PF02645_consen 1 KIAIITDSTSDLP------PELA----EEYG-IYVVPLNIIIDGKEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFE 69 (280)
T ss_dssp -EEEEEEGGG---------HHHH----HHTT-EEEE--EEEETTEEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHH
T ss_pred CEEEEECCCCCCC------HHHH----HhCC-eEEEeEEEecCCeEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHH
Confidence 688888 655544 2222 2233 344443333333211122378988888877677777777664 35788
Q ss_pred HHHHHHHHhCCcEEEEE----cCCCcHHHHHHHHHHHHHcCCCceee
Q 012056 171 KIVDSIQDRGINQVYII----GGDGTQKGAAVIYEEIRQRGLKVAVA 213 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivI----GGdgs~~~a~~L~~~~~~~~~~i~vv 213 (472)
++.+.+.+.+-|.+++| |=.||+..|...++.+ .+.++.|+
T Consensus 70 ~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi 114 (280)
T PF02645_consen 70 EAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI 114 (280)
T ss_dssp HHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE
T ss_pred HHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE
Confidence 88888888999988887 5678888888877765 24454444
No 157
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=42.73 E-value=43 Score=35.57 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkT 218 (472)
..++.++.+++.+.|.+|-+||--++..|+.++-.... ..-+.++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 36788899999999999999999999988776532221 1112678888877
No 158
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.57 E-value=3e+02 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.419 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
..++++.+...++|++++.+.+.+... ..+.+.+.+ +++|.+
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~---~~~~~~~~~--ipvV~~ 85 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPD---LLKRLAESG--IPVVLV 85 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH---HHHHHHhcC--CCEEEE
Confidence 346778888999999999987654321 223344445 456654
No 159
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.24 E-value=3.3e+02 Score=26.35 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
+..+.+...++|++++.+-+.+.. ..+.+++.+++ ||.+
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~----~~~~~~~~~ip--vV~~ 85 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDP----LVAALLRRGLP--VVVV 85 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChH----HHHHHHHcCCC--EEEE
Confidence 455667889999999998765432 23334444554 5533
No 160
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=41.63 E-value=44 Score=31.34 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHH---hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 166 GHDTSKIVDSIQD---RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 166 ~~~~~~i~~~l~~---~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
.-|+..+++.++- .++|.++++-||+-|.- |.+.++++|..+-++|.|+.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 4678888887766 68999999999999964 55666778988888887653
No 161
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=41.58 E-value=43 Score=34.56 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (472)
..+++++.+++ +.|.++-|||--.++.|..++ +. + .+|+|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~--gip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--V--GKPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--c--CCCEEEeCCCcccC
Confidence 35677778888 999999999999898888776 32 2 46799999998654
No 162
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=41.49 E-value=3e+02 Score=25.69 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=47.3
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
|||++...-..|..+.+++++-+.+.. .+ .++. + .-+........+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~-~g-~~~~-------------~------------------~~~~~~~~~~~~~ 47 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE-LG-VELI-------------V------------------LDAQNDVSKQIQQ 47 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh-cC-ceEE-------------E------------------ECCCCCHHHHHHH
Confidence 578888766778888888888766632 11 1111 0 0011111223466
Q ss_pred HHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
++.|...++|++++.+.+.... ....+++.+.+ +++|.+
T Consensus 48 ~~~l~~~~vdgvi~~~~~~~~~--~~~~~~l~~~~--ip~V~~ 86 (267)
T cd01536 48 IEDLIAQGVDGIIISPVDSAAL--TPALKKANAAG--IPVVTV 86 (267)
T ss_pred HHHHHHcCCCEEEEeCCCchhH--HHHHHHHHHCC--CcEEEe
Confidence 7777788999999987653321 11223344444 455554
No 163
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=41.45 E-value=2.8e+02 Score=25.28 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC---ccCcCcccCchhHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND---IPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND---i~gtd~S~GfdTA~~~~~~~i~ 244 (472)
+..+.++.+...++++++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+...+++.+.
T Consensus 46 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (269)
T cd01391 46 RALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLA 120 (269)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 4567777788889999988877655432 334444444 5677664443321 1111233444455555555443
Q ss_pred HHHHhhhcCcceEEEEE
Q 012056 245 AAHVEAESIENGIGVVK 261 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVE 261 (472)
+.. ++++.++=
T Consensus 121 ~~~------~~~i~~i~ 131 (269)
T cd01391 121 EKG------WKRVALIY 131 (269)
T ss_pred HhC------CceEEEEe
Confidence 332 35677664
No 164
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=41.26 E-value=47 Score=35.40 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~ 200 (472)
..+++++.+++.++|.+|-|||--.++.|+.++
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 68 SFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999987765
No 165
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=41.22 E-value=3e+02 Score=29.89 Aligned_cols=140 Identities=17% Similarity=0.165 Sum_probs=93.4
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
.++||.-+ ||-==.||+++.+.+.. .+.-+ .++-|.+.|+.. ||- |.=++.|+..
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~ 69 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALA--NDSPL--------------LIEATSNQVDQF---GGY---TGMTPADFRG 69 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc---CCCCHHHHHH
Confidence 46677775 55444689998876643 22222 367888888776 774 5445556544
Q ss_pred H-HHHHHHhCCcE-EEEEcCCC-------------cHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 172 I-VDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 172 i-~~~l~~~~Id~-LivIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
. .+.-++.+++. .+++|||- +|.-|..+.+...+.|+. -|+|=.|++ ..+....+.-+|-+
T Consensus 70 ~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA 145 (426)
T PRK15458 70 FVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVA 145 (426)
T ss_pred HHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHH
Confidence 3 44456788888 99999973 466666666666666886 688888887 66656677778999
Q ss_pred HHHHHHHHHHHHhhh---cCcceEEEE
Q 012056 237 EEAQRAINAAHVEAE---SIENGIGVV 260 (472)
Q Consensus 237 ~~~~~~i~~i~~~A~---s~~~rv~iV 260 (472)
+.+++.|...-.++. ....-+++|
T Consensus 146 ~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 146 ERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 999888886555542 222346777
No 166
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.06 E-value=1.3e+02 Score=30.07 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred CCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC---CCChHHHHHHHHHh
Q 012056 103 CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDSIQDR 179 (472)
Q Consensus 103 apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~ 179 (472)
+|....-.+.+++.+....+..++.-+...+. +. ..+.....+.+...|+.+.++.+. ..|+...+..++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444445556665433344456655554332 11 111112223344567777776554 35788999999999
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
+-|++++.|..+. +..+.+.+.+.|++.++++
T Consensus 190 ~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 190 NPDAIILISYYND---GAPIARQARAVGLDIPVVA 221 (340)
T ss_pred CCCEEEEccccch---HHHHHHHHHHcCCCCcEEc
Confidence 9999888775432 3446666777788766654
No 167
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.90 E-value=3.2e+02 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
..++++.|..+++|++++.+.+-+
T Consensus 44 ~~~~i~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06290 44 ELEALELLKSRRVDALILLGGDLP 67 (265)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCC
Confidence 447788899999999999987643
No 168
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=40.77 E-value=46 Score=34.95 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHH-------------cCCCceeecccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTIDN 221 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTIDN 221 (472)
..+++++.+++.+.|.+|-|||--.++.|+.++-.... ....+|+|.||-|--.
T Consensus 74 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagT 140 (382)
T cd08187 74 TVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAAT 140 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCch
Confidence 46788899999999999999999999988876532111 0124678999987443
No 169
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=40.61 E-value=2.1e+02 Score=27.93 Aligned_cols=103 Identities=17% Similarity=0.313 Sum_probs=56.9
Q ss_pred EccCCCCCchhH-HHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC--------
Q 012056 97 VTCGGLCPGLNT-VIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH-------- 167 (472)
Q Consensus 97 ltsGG~apGmNa-~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~-------- 167 (472)
+.||+ +-|+.. +.+++. ..++..|.-+-.|..-.+. .-+++..+.+...||.+| |.+++
T Consensus 77 IVSG~-A~GiD~~ah~~al-----~~~g~tIaVl~~gld~~yp----~~n~~l~~~i~~~gglli--Se~p~~~~~~~~~ 144 (220)
T TIGR00732 77 IVSGL-ALGIDGIAHKAAL-----KVNGRTIAVLGTGLDQIYP----RQNSKLAAKIAENGGLLL--SEYPPDTKPIKYN 144 (220)
T ss_pred EEcCc-hhhHHHHHHHHHH-----HcCCCEEEEECCCCccCCc----hhhHHHHHHHHHcCCEEE--EecCCCCCCCccc
Confidence 44554 455554 333332 2355455555555543322 224455667777788766 22211
Q ss_pred --ChHHHHHHHHHhCCcEEEEEcC---CCcHHHHHHHHHHHHHcCCCceeecccccccc
Q 012056 168 --DTSKIVDSIQDRGINQVYIIGG---DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (472)
Q Consensus 168 --~~~~i~~~l~~~~Id~LivIGG---dgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (472)
.+.+++..| =+++|+++. .||+.+|..-. +.| .+|..+|..+++
T Consensus 145 f~~RNriia~l----s~~vivve~~~~sGtl~ta~~A~----~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 145 FPKRNRIISGL----SRAVLVVEAPLKSGALITARYAL----EQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHHHHh----cCEEEEEECCCCCchHHHHHHHH----HhC--CcEEEEcCCCCC
Confidence 234554444 367899887 47777665433 334 468999998885
No 170
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=40.37 E-value=32 Score=35.78 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHhC---CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH
Q 012056 168 DTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (472)
Q Consensus 168 ~~~~i~~~l~~~~---Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~ 237 (472)
..+++++.+.+++ .|.++.|||--.+..|..++... .++ +++|.||-|. +..+|.+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 4678888888877 89999999998888887766432 234 6799999993 244566777666655
No 171
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=40.21 E-value=2.2e+02 Score=27.75 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=47.7
Q ss_pred eEEEEccCCC-CCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 93 HACIVTCGGL-CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 93 ~iaIltsGG~-apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
||+|++...+ ..|+...++.+++.+........++.............. . ++..............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 67 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE--Q-----------EVVRVIVLDNPLDYRR 67 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc--c-----------cceeeeecCCchhHHH
Confidence 6888887766 789999999999988643222233333333222111100 0 1111111111234567
Q ss_pred HHHHHHHhCCcEEEEEcCC
Q 012056 172 IVDSIQDRGINQVYIIGGD 190 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGd 190 (472)
+.+.+++.+.|.+++--..
T Consensus 68 ~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 68 AARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHhhcCCCEEEEeecc
Confidence 7788899999988875533
No 172
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.07 E-value=59 Score=34.10 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-------CC------Cceeecccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------GL------KVAVAGIPKTI 219 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-------~~------~i~vvgIPkTI 219 (472)
..+++++.+++.+.|.+|-|||--.++.|+.++-..... +. .+++|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 356778888999999999999999999987665322110 11 36789998884
No 173
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=39.80 E-value=33 Score=32.04 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=34.7
Q ss_pred ccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 163 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 163 sR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
-|.++.+.+++++.++.+++.+|.+.|-...-. --++- ....||||+|-..
T Consensus 36 HRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 36 HRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCc
Confidence 466777889999999999988777766543221 11221 2467899999754
No 174
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=39.78 E-value=55 Score=34.11 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHhC--CcEEEEEcCCCcHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYE 201 (472)
Q Consensus 168 ~~~~i~~~l~~~~--Id~LivIGGdgs~~~a~~L~~ 201 (472)
..+++++.+++.+ .|.++-|||--.++.|..++-
T Consensus 66 ~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~ 101 (355)
T TIGR03405 66 QLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV 101 (355)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence 4667888888877 999999999999998876643
No 175
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=39.71 E-value=38 Score=35.81 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV 225 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g 225 (472)
.+.+++...+.+.+.|.++=|||--+++.|+.++.. +++|+|.||-+=++|=+.
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAIT 124 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCcccccccc
Confidence 467788888887899999999999999999988764 467899999998888544
No 176
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=39.50 E-value=37 Score=35.09 Aligned_cols=44 Identities=5% Similarity=0.234 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
.+++++.+++ +.|.++-|||--.++.|..++.. + .+|+|.||-|
T Consensus 70 v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTT 113 (348)
T cd08175 70 VGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTA 113 (348)
T ss_pred HHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 5567777777 99999999999999988887632 2 4679999999
No 177
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=38.69 E-value=45 Score=35.47 Aligned_cols=64 Identities=23% Similarity=0.376 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhCCc---EEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 169 TSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 169 ~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
.+++.+.+.+++.+ .++.|||-=+++.|..++-. ..++ +++|.||-| =+..+|.+.|.-++++.
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT---lla~vda~~g~~~~v~~ 163 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 163 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC---CccccCCCccchhheec
Confidence 67888999999998 99999998888887766532 2234 679999999 23455666665555543
No 178
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=38.62 E-value=49 Score=34.83 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc-------------CCCceeecccccc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTI 219 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTI 219 (472)
..+.++.+++.+.|.+|-|||--.++.|+.++-....- +-.+++|.||-|-
T Consensus 68 v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 68 LCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 45667888899999999999999999998876433110 1146788888774
No 179
>PRK05637 anthranilate synthase component II; Provisional
Probab=38.54 E-value=58 Score=31.47 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=34.0
Q ss_pred HHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
+.+.+.+.+++|+-||-|+...+....+.+++..-++||.|| |+|++.-...
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577899999999999997764433333221113556665 8998766554
No 180
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.15 E-value=2.3e+02 Score=25.43 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=61.8
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccCh-hHHhhhhhcCCcccccccCC---
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTP-KVVNDIHKRGGTILGTSRGG--- 166 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~-~~v~~~~~~GGs~LGssR~~--- 166 (472)
+.||-+-+.|||.=-+= ..++..... ..|.+|+ ..+-+ -+. +.++.....+..+++-|-..
T Consensus 2 ~~~v~~a~~g~D~Hd~g---~~iv~~~l~-~~GfeVi---------~lg~~--~s~e~~v~aa~e~~adii~iSsl~~~~ 66 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRG---AKVIATAYA-DLGFDVD---------VGPLF--QTPEEIARQAVEADVHVVGVSSLAGGH 66 (132)
T ss_pred CCEEEEEeeCCCccHHH---HHHHHHHHH-hCCcEEE---------ECCCC--CCHHHHHHHHHHcCCCEEEEcCchhhh
Confidence 35788888888654222 222222222 2334554 11111 122 34555666666666544421
Q ss_pred -CChHHHHHHHHHhCC-cEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHH
Q 012056 167 -HDTSKIVDSIQDRGI-NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 167 -~~~~~i~~~l~~~~I-d~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~ 244 (472)
+.+.++++.|++.+. +..+++||.=.-.. .+++++.|+ |..|+-.|-+..+++++.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~----~~~l~~~Gv------------------d~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQD----FDELKEMGV------------------AEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHh----HHHHHHCCC------------------CEEECCCCCHHHHHHHHH
Confidence 346777888888777 56677777544222 122333443 556666666666666655
Q ss_pred H
Q 012056 245 A 245 (472)
Q Consensus 245 ~ 245 (472)
+
T Consensus 125 ~ 125 (132)
T TIGR00640 125 K 125 (132)
T ss_pred H
Confidence 4
No 181
>PRK09492 treR trehalose repressor; Provisional
Probab=37.98 E-value=4e+02 Score=26.14 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=40.4
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
.+||++...-..|-.+.+++++...+.. ++ .+++- +-+........+
T Consensus 63 ~~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~g-y~~~~-------------------------------~~~~~~~~~~~~ 109 (315)
T PRK09492 63 KVVGIIVSRLDSLSENQAVRTMLPAFYE-QG-YDPII-------------------------------MESQFSPEKVNE 109 (315)
T ss_pred CeEEEEecCCcCcccHHHHHHHHHHHHH-cC-CeEEE-------------------------------EecCCChHHHHH
Confidence 4899998765667778888888776642 22 22210 001111112335
Q ss_pred HHHHHHHhCCcEEEEEcC
Q 012056 172 IVDSIQDRGINQVYIIGG 189 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGG 189 (472)
.++.|...++|++|+.+-
T Consensus 110 ~~~~l~~~~vdgiIi~~~ 127 (315)
T PRK09492 110 HLGVLKRRNVDGVILFGF 127 (315)
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 677788999999999874
No 182
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.68 E-value=1.6e+02 Score=29.48 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
..++.++.+++.|+|++++- |=.+.-+..+.+.++++|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 57899999999999999995 66778888888888889987655455655
No 183
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=37.09 E-value=39 Score=25.99 Aligned_cols=50 Identities=10% Similarity=0.303 Sum_probs=34.8
Q ss_pred cccccCCCChHHHHHHHHHhCCcE------------EEEEcCCCcHHHHHHHHHHHH-HcCCC
Q 012056 160 LGTSRGGHDTSKIVDSIQDRGINQ------------VYIIGGDGTQKGAAVIYEEIR-QRGLK 209 (472)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~------------LivIGGdgs~~~a~~L~~~~~-~~~~~ 209 (472)
+|+-+...+.++.++.|++.+++. -+.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 455555566788888888888874 678899999988888888877 45554
No 184
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=36.73 E-value=5.6e+02 Score=27.81 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=90.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (472)
.++||.-+ ||-==.||+++.+.+.. .+.-+ .++.|.+.|+.. ||- |.=++.|+..
T Consensus 11 ~~~gI~sV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~ 65 (420)
T TIGR02810 11 EPRGIYSV---CSAHPLVLEAAIRRARA--SGTPV--------------LIEATSNQVNQF---GGY---TGMTPADFRD 65 (420)
T ss_pred CCCeEEEE---CCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc---CCCCHHHHHH
Confidence 35677775 55444789998876643 22222 367888888776 775 4445556544
Q ss_pred -HHHHHHHhCCcE-EEEEcCCC-------------cHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHH
Q 012056 172 -IVDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (472)
Q Consensus 172 -i~~~l~~~~Id~-LivIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~ 236 (472)
+.+.-++.+++. .+++|||- +|..|..+.....+.|+. -|+|=.|++ ..+-..-+.-+|-+
T Consensus 66 ~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA 141 (420)
T TIGR02810 66 FVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVA 141 (420)
T ss_pred HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHH
Confidence 344566788988 99999983 455566666555566886 688888887 22222456678888
Q ss_pred HHHHHHHHHHHHhhh---cCcceEEEE
Q 012056 237 EEAQRAINAAHVEAE---SIENGIGVV 260 (472)
Q Consensus 237 ~~~~~~i~~i~~~A~---s~~~rv~iV 260 (472)
+.+++.|...-.++. ....-+++|
T Consensus 142 eRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 142 ERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 998888876555544 322346777
No 185
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.73 E-value=4e+02 Score=25.80 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=15.3
Q ss_pred cCCCC--CchhHHHHHHHHHHHH
Q 012056 99 CGGLC--PGLNTVIREIVCGLYH 119 (472)
Q Consensus 99 sGG~a--pGmNa~Ir~vv~~~~~ 119 (472)
.|||. |-...++.++.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~ 35 (269)
T cd06287 13 AGGPSRLGFMMEVAAAAAESALE 35 (269)
T ss_pred cCCcccCccHHHHHHHHHHHHHH
Confidence 46664 7788889998887753
No 186
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=36.62 E-value=83 Score=33.03 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=46.5
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC---CeeccChhHHhhhhhcCCccccccc-CCCC
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK---NTINLTPKVVNDIHKRGGTILGTSR-GGHD 168 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~---~~~~L~~~~v~~~~~~GGs~LGssR-~~~~ 168 (472)
||.| ..||...=+..+ ++.+.+.......+++|+-.+ .+-.. ...+++.-.+.++.. .|..-+ -..-
T Consensus 7 ki~i-~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~~----~l~~~~~~~~~ 77 (385)
T TIGR00215 7 TIAL-VAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLRE----VLGRLGRLLKI 77 (385)
T ss_pred eEEE-EeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHHH----HHHHHHHHHHH
Confidence 4433 334443336666 666666543334577876532 11110 113343334444321 121110 0123
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCC
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdg 191 (472)
+.++.+.+++.+.|.++.+||-+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~ 100 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPD 100 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC
Confidence 55888889999999999999844
No 187
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=36.49 E-value=1.2e+02 Score=30.17 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=48.9
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..|+.++ ||. |+ ++..+++.+...| +.++.|.++||-.- +-....++.|...+-.+|=.+=+.+..|
T Consensus 105 ~~~v~ll--G~~-~~---v~~~a~~~l~~~y-~l~i~g~~~Gyf~~------~e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGK-PE---VLAQTEAKLRTQW-NVNIVGSQDGYFTP------EQRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCC-HH---HHHHHHHHHHHHh-CCEEEEEeCCCCCH------HHHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 4577666 554 44 4444444444557 67999999998631 0112246667666665543333333344
Q ss_pred HHHHH-HHHhCCcEEEEEcC
Q 012056 171 KIVDS-IQDRGINQVYIIGG 189 (472)
Q Consensus 171 ~i~~~-l~~~~Id~LivIGG 189 (472)
..+.. ...++...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 44444 44446777788888
No 188
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=36.44 E-value=48 Score=31.29 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
+.+.+++.|+||+-||.|+......-.+.+++..-++||.|| |+|++-....
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422111122211224566665 8888755543
No 189
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=36.39 E-value=3.9e+02 Score=25.49 Aligned_cols=45 Identities=11% Similarity=0.261 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (472)
..+.++.|...++|++++.+.+.+. .....+++.+++ +|||.+-.
T Consensus 46 ~~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~ 90 (275)
T cd06320 46 QLSIAENMINKGYKGLLFSPISDVN--LVPAVERAKKKG--IPVVNVND 90 (275)
T ss_pred HHHHHHHHHHhCCCEEEECCCChHH--hHHHHHHHHHCC--CeEEEECC
Confidence 3467788888999999887655332 112234444444 55775543
No 190
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=36.29 E-value=37 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAA 197 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~ 197 (472)
..+.++.|++|+|| |+.||+-|+.-|.
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 34678889999999 7899999986543
No 191
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.96 E-value=1.8e+02 Score=28.22 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=43.6
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
+||++...-..|.....+.++.+.+.. ++ .+++ + .-++.......++
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~---------~----------------------~~~~~~~~~~~~~ 48 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLR---------I----------------------LDGRGSEAGQAAA 48 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEE---------E----------------------ECCCCCHHHHHHH
Confidence 688888777778888888888877743 22 2221 0 0011111234578
Q ss_pred HHHHHHhCCcEEEEEcCCC
Q 012056 173 VDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdg 191 (472)
++.|..+++|++|+.+.+.
T Consensus 49 i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHcCCCEEEEcCCCH
Confidence 8889999999999998653
No 192
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=35.73 E-value=1.4e+02 Score=28.59 Aligned_cols=90 Identities=21% Similarity=0.367 Sum_probs=57.7
Q ss_pred EEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------CCeeccChhHHhhhhhcCCcccccccC-
Q 012056 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG- 165 (472)
Q Consensus 96 IltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGssR~- 165 (472)
++.+||+.+-.... +.+. .....++++-.|..=|++ |++=-++.+..+.+...|-.+.-....
T Consensus 2 ~Ii~~g~~~~~~~~-----~~~~--~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~K 74 (208)
T cd07995 2 LILLGGPLPDSPLL-----LKLW--KKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEK 74 (208)
T ss_pred EEEECCcCCcchhH-----HHhh--ccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCC
Confidence 56778888744433 2222 233478999999876654 344344544555554443223322221
Q ss_pred -CCChHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 166 -GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 166 -~~~~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
.-|.+++++.+.+++.+-++++|+.|.
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 237999999999999999999999998
No 193
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=34.69 E-value=34 Score=37.91 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhC---CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH
Q 012056 169 TSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (472)
Q Consensus 169 ~~~i~~~l~~~~---Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~ 238 (472)
.+++.+.|.+.+ -|.++.|||--+++.|..++... .+| +++|.||-|. ++.+|-|+|.-|++|.
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTl---lA~vDss~ggkt~in~ 321 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSL---LAMVDASTGGKTGINT 321 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChH---HhhhccccCCceEEEC
Confidence 456778888884 89999999988888877765421 245 6699999996 2556667776666543
No 194
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.48 E-value=4.1e+02 Score=25.21 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC-cccCc--hhHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGF--DTAVEEAQRAINA 245 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd-~S~Gf--dTA~~~~~~~i~~ 245 (472)
..+.++.+...++|++++.+-.-.... +.+ +.+.+ +|+|.+ |++++..+ .++++ ..|...+++.+
T Consensus 44 ~~~~i~~~~~~~~dgiii~~~~~~~~~---~~~-~~~~~--~pvV~i----~~~~~~~~~~~V~~d~~~~~~~~~~~L-- 111 (269)
T cd06293 44 ELTYLRWLDTNHVDGLIFVTNRPDDGA---LAK-LINSY--GNIVLV----DEDVPGAKVPKVFCDNEQGGRLATRHL-- 111 (269)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHH---HHH-HHhcC--CCEEEE----CCCCCCCCCCEEEECCHHHHHHHHHHH--
Confidence 356788899999999999874322221 222 22334 456654 33333222 33443 34444444444
Q ss_pred HHHhhhcCcceEEEEEe-------cCCCcchHHHHH
Q 012056 246 AHVEAESIENGIGVVKL-------MGRYCGFIAMYA 274 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEv-------MGr~~G~LA~~a 274 (472)
.. .++ +++.++-- .-|..||.....
T Consensus 112 -~~--~G~-~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 112 -AR--AGH-RRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred -HH--CCC-ceEEEEecCcccccHHHHHHHHHHHHH
Confidence 32 244 56777742 235567766444
No 195
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.45 E-value=1.9e+02 Score=25.08 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHhhhhhcCCcccccccCC----CChHHHHHHHHHhCC-cEEEEEcCCCc
Q 012056 148 VVNDIHKRGGTILGTSRGG----HDTSKIVDSIQDRGI-NQVYIIGGDGT 192 (472)
Q Consensus 148 ~v~~~~~~GGs~LGssR~~----~~~~~i~~~l~~~~I-d~LivIGGdgs 192 (472)
.++.+...+-.+++-|-.. +..+++++.|++.+. +..+++||...
T Consensus 42 ~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 42 IVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3444555555555544321 346777888888877 66788888765
No 196
>CHL00101 trpG anthranilate synthase component 2
Probab=34.32 E-value=48 Score=31.27 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.1
Q ss_pred HHHHhCCcEEEEEcCCCcHHH
Q 012056 175 SIQDRGINQVYIIGGDGTQKG 195 (472)
Q Consensus 175 ~l~~~~Id~LivIGGdgs~~~ 195 (472)
.+.+.++|++|+.||.|+...
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHhhCCCCEEEECCCCCChHH
Confidence 345678999999999998754
No 197
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.33 E-value=62 Score=28.64 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccc
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (472)
.+++.+.++++|.++++.||+-|..+.. .++++|..+.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~---~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVE---RLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHH---HHHHcCCEEEEEccC
Confidence 3455556678999999999999876543 445568888777777
No 198
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.28 E-value=4.2e+02 Score=25.03 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=39.4
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHHH
Q 012056 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (472)
Q Consensus 94 iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (472)
|||+...=+-|=++.++.++.+.+.. ++ .+++ +.. +..........+
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~-~~-~~~~-~~~------------------------------~~~~~~~~~~~i 48 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAE-RG-YSTF-VAN------------------------------TGDNPDAQRRAI 48 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHH-CC-CEEE-EEe------------------------------CCCCHHHHHHHH
Confidence 56776554567788888888776643 32 1221 000 001111234667
Q ss_pred HHHHHhCCcEEEEEcCCCc
Q 012056 174 DSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs 192 (472)
+.+...++|++++.+-+..
T Consensus 49 ~~l~~~~~dgiii~~~~~~ 67 (265)
T cd06285 49 EMLLDRRVDGLILGDARSD 67 (265)
T ss_pred HHHHHcCCCEEEEecCCCC
Confidence 7889999999999875544
No 199
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=33.25 E-value=4.4e+02 Score=25.17 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCcc
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (472)
.+.++.+.+ ++|+++++..+.+. .....+++.+.++ |+| ++|++.+
T Consensus 49 ~~~i~~~~~-~vdgiii~~~~~~~--~~~~i~~~~~~~i--pvV----~~~~~~~ 94 (275)
T cd06307 49 AAALLRLGA-RSDGVALVAPDHPQ--VRAAVARLAAAGV--PVV----TLVSDLP 94 (275)
T ss_pred HHHHHHHHh-cCCEEEEeCCCcHH--HHHHHHHHHHCCC--cEE----EEeCCCC
Confidence 456677778 99999999876432 1223344445454 455 3355543
No 200
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=33.02 E-value=3.2e+02 Score=29.46 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHc---CCCceee-ccccccc
Q 012056 181 INQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVA-GIPKTID 220 (472)
Q Consensus 181 Id~LivIGGdgs~~~a~~L~~~~~~~---~~~i~vv-gIPkTID 220 (472)
+|.+|++=|-||...-..+.+|...+ ..++||| ||=--+|
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D 231 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETD 231 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCC
Confidence 79999999999998766655543222 5566665 3433333
No 201
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=32.79 E-value=1.2e+02 Score=31.33 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccC-ccCcC---cccCchhHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND-IPVID---KSFGFDTAVEEAQRAI 243 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND-i~gtd---~S~GfdTA~~~~~~~i 243 (472)
++++.+..|.+ ..|.+|||||..|-.+ .+|++-+++.+.+.-.|-=+.=||-+ +.+.+ -|=|-.|=-..+-+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 46777777765 6999999999999875 55777777766555455555555522 22221 2445555444444555
Q ss_pred HHHH
Q 012056 244 NAAH 247 (472)
Q Consensus 244 ~~i~ 247 (472)
+.+.
T Consensus 277 ~~l~ 280 (298)
T PRK01045 277 ARLK 280 (298)
T ss_pred HHHH
Confidence 4443
No 202
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.36 E-value=3.1e+02 Score=24.81 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=63.4
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChh-HHhhhhhcCCccccc-ccCC---C
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPK-VVNDIHKRGGTILGT-SRGG---H 167 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~-~v~~~~~~GGs~LGs-sR~~---~ 167 (472)
+|-+-+.|||.=-+..-+-+.. + .. .+.+|+ +.|. +.+.+ -++.....+-.++|- +... .
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~--l-~~-~GfeVi-----~LG~------~v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHA--F-TN-AGFNVV-----NLGV------LSPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHH--H-HH-CCCEEE-----ECCC------CCCHHHHHHHHHHcCCCEEEEecccccCHH
Confidence 6777788888765544332221 2 22 334665 3332 22322 344444444445553 2322 3
Q ss_pred ChHHHHHHHHHhCC-cEEEEEcCCCcHHHHH--HHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGI-NQVYIIGGDGTQKGAA--VIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 168 ~~~~i~~~l~~~~I-d~LivIGGdgs~~~a~--~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~ 244 (472)
.+.++++.|++.++ +..+++||.-..-... ...+.+++.|+ |..||-+|-.+.+++.++
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv------------------~~vF~pgt~~~~iv~~l~ 129 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF------------------DRVFAPGTPPEVVIADLK 129 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCC------------------CEEECcCCCHHHHHHHHH
Confidence 57889999999998 5567799974422111 12234455554 445555566666666554
Q ss_pred H
Q 012056 245 A 245 (472)
Q Consensus 245 ~ 245 (472)
.
T Consensus 130 ~ 130 (134)
T TIGR01501 130 K 130 (134)
T ss_pred H
Confidence 3
No 203
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=31.83 E-value=1.7e+02 Score=29.90 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCc-cCcC---cccCchhHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI-PVID---KSFGFDTAVEEAQRAI 243 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi-~gtd---~S~GfdTA~~~~~~~i 243 (472)
++++.+..|.+ .+|.++||||..|-. ..+|++-+++.+.+.-.|-=|.=|+.+. .+.+ -|=|-.|=-..+-+.+
T Consensus 198 ~RQ~a~~~La~-~vD~miVIGg~~SsN-T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi 275 (281)
T PF02401_consen 198 NRQEAARELAK-EVDAMIVIGGKNSSN-TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVI 275 (281)
T ss_dssp HHHHHHHHHHC-CSSEEEEES-TT-HH-HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHh-hCCEEEEecCCCCcc-HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHH
Confidence 46677777765 699999999999965 5778888888776544454455444322 2221 2344555444455554
Q ss_pred HHH
Q 012056 244 NAA 246 (472)
Q Consensus 244 ~~i 246 (472)
+.+
T Consensus 276 ~~l 278 (281)
T PF02401_consen 276 DRL 278 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 204
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.61 E-value=4.4e+02 Score=24.76 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=42.6
Q ss_pred EEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-CChHHH
Q 012056 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTSKI 172 (472)
Q Consensus 94 iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~~i 172 (472)
|||+...-+.|-.+.++.++.+.+.. .+ ..+. ++.+.... ....+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~~-~~~~-------------------------------~~~~~~~~~~~~~~~ 48 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAARE-AG-YAVT-------------------------------LSMLAEADEEALRAA 48 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHH-CC-CeEE-------------------------------EEeCCCCchHHHHHH
Confidence 67777777777777777777776643 22 2222 01111111 234567
Q ss_pred HHHHHHhCCcEEEEEcCCCcHH
Q 012056 173 VDSIQDRGINQVYIIGGDGTQK 194 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs~~ 194 (472)
++.+.+.++|++++.+-+....
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~ 70 (264)
T cd01574 49 VRRLLAQRVDGVIVNAPLDDAD 70 (264)
T ss_pred HHHHHhcCCCEEEEeCCCCChH
Confidence 8888899999999998766553
No 205
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=31.59 E-value=1.2e+02 Score=30.46 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=38.2
Q ss_pred ceEEEEEecCCCcchHHHHHhhccCCc---ceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEEEEeCCC
Q 012056 255 NGIGVVKLMGRYCGFIAMYATLGSRDV---DCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVIVIAEGA 321 (472)
Q Consensus 255 ~rv~iVEvMGr~~G~LA~~aaLA~~~a---d~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vIvvaEG~ 321 (472)
+.+.++|+ +.||+.+.||+-...+ .++|+||.|- +-.+.|++++++. ...-|+++.-.
T Consensus 90 ~~~~i~~~---~~G~v~anAGID~SNv~~g~~~LLP~DPd------~SA~~ir~~l~~~~g~~v~VIItDt~ 152 (245)
T PRK13293 90 APFILTET---KHGHVCANAGIDESNVPDGDLLLLPENPD------ESAERIREGLEELTGKKVGVIITDTN 152 (245)
T ss_pred CCeEEEEe---ccceEEeccccccccCCCCeEEecCCCHH------HHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 44677776 6799988888764333 3789999984 3456677666552 34446666643
No 206
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.21 E-value=47 Score=31.21 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=17.5
Q ss_pred HHHHHhCCcEEEEEcCCCcHHH
Q 012056 174 DSIQDRGINQVYIIGGDGTQKG 195 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs~~~ 195 (472)
+.+++++.|++|+-||-++-.-
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHh
Confidence 3456778999999999998643
No 207
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=30.58 E-value=3.4e+02 Score=29.03 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHHhCCcEEEEEcCCCcHHHHHHHHHHHHHc---CCCceee-cccccccc
Q 012056 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVA-GIPKTIDN 221 (472)
Q Consensus 176 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~---~~~i~vv-gIPkTIDN 221 (472)
+.+.++|.++++=|-||...-..+.++..-+ ..++||| ||=--+|.
T Consensus 188 ~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~ 237 (438)
T PRK00286 188 ANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDF 237 (438)
T ss_pred hcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCc
Confidence 3333469999999999987765444432221 4455555 44444443
No 208
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=30.53 E-value=2.1e+02 Score=25.33 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=41.9
Q ss_pred EEEEEccccccccc----------CCeeccChhHHhhhhhcCCcccccccC-CCChHHHHHHHHHhCCcEEEEEcCCCc
Q 012056 125 KILGIDGGYRGFYS----------KNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 125 ~v~Gi~~G~~GL~~----------~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~~i~~~l~~~~Id~LivIGGdgs 192 (472)
-++++-.|..=|++ |++=-++.+....+...|-.++-...- .-|++++++.+.+++.+-++++|+.|.
T Consensus 18 ~~i~aDgGa~~l~~~~g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 18 FIIAADGGANRLYELFGIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp EEEEETTHHHHHHHTTTT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred EEEEEchHHHHHHHhcCCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 34555555554433 344445555555555665555544411 237999999999999999999999997
No 209
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=30.10 E-value=3e+02 Score=22.35 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=42.9
Q ss_pred EEEccCCCCC-chhHHHHHHHHHHHHhcCCcEEE-EEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 95 CIVTCGGLCP-GLNTVIREIVCGLYHMYGVSKIL-GIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 95 aIltsGG~ap-GmNa~Ir~vv~~~~~~~~~~~v~-Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
.++.-|.+-| ..|..++.+.+.+....+...++ |+.+. ..++++.+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3444577877 89999999988775433222221 22111 24578889
Q ss_pred HHHHHHhCCcEEEEE-----cCCCcH
Q 012056 173 VDSIQDRGINQVYII-----GGDGTQ 193 (472)
Q Consensus 173 ~~~l~~~~Id~LivI-----GGdgs~ 193 (472)
++.|++.|++.++++ -|..+.
T Consensus 51 l~~l~~~g~~~vvvvPl~~~~g~h~~ 76 (101)
T cd03409 51 IRELAEEGYQRVVIVPLAPVSGDEVF 76 (101)
T ss_pred HHHHHHcCCCeEEEEeCccccChhhH
Confidence 999999898887764 455555
No 210
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.82 E-value=91 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHhCC-cEEEEEcCCC
Q 012056 167 HDTSKIVDSIQDRGI-NQVYIIGGDG 191 (472)
Q Consensus 167 ~~~~~i~~~l~~~~I-d~LivIGGdg 191 (472)
..++++++.|++.++ +..+++||.-
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 467899999999999 8889999984
No 211
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.50 E-value=80 Score=27.45 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
-+.+++++..++.++++ +.||-|.+.-...|++.+.+.|+ .++|-
T Consensus 61 l~~e~I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp TSHHHHHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccHHHHhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 57899999999997776 56999999999999998887775 46764
No 212
>PLN02204 diacylglycerol kinase
Probab=29.50 E-value=67 Score=36.23 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=41.7
Q ss_pred cEEEEEcccccccccCCeeccChhHHhhhhhcCCc---ccccccCCCChHHHHHHH---HHhCCcEEEEEcCCCcHHHH
Q 012056 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT---ILGTSRGGHDTSKIVDSI---QDRGINQVYIIGGDGTQKGA 196 (472)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs---~LGssR~~~~~~~i~~~l---~~~~Id~LivIGGdgs~~~a 196 (472)
.+++-|.|=+.|=- .- .-.|+.|..+....|- ++-|.|.++ ...+++.+ ...+.|++|++||||++.-+
T Consensus 160 k~llVivNP~sGkg--~~-~~~~~~V~p~f~~a~i~~~v~~T~~agh-A~d~~~~~~~~~l~~~D~VVaVGGDGt~nEV 234 (601)
T PLN02204 160 KNLLVFVHPLSGKG--SG-SRTWETVSPIFIRAKVKTKVIVTERAGH-AFDVMASISNKELKSYDGVIAVGGDGFFNEI 234 (601)
T ss_pred ceEEEEECCCCCCc--ch-HHHHHHHHHHHHHcCCeEEEEEecCcch-HHHHHHHHhhhhccCCCEEEEEcCccHHHHH
Confidence 36677777666532 21 1236667777666552 455666543 23333333 35678999999999998654
No 213
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.43 E-value=51 Score=28.75 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=24.0
Q ss_pred HHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 172 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
+.+.+.+..++.++++-||+-|..+. +.++++|.++-+++.|...
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~~ 131 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDSA 131 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGGS
T ss_pred HHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCCC
Confidence 33444445579999999999987654 3445678887788764443
No 214
>PRK04011 peptide chain release factor 1; Provisional
Probab=29.34 E-value=1.8e+02 Score=31.29 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=16.4
Q ss_pred chHHHHHhhccCCcceEecCCC
Q 012056 268 GFIAMYATLGSRDVDCCLIPES 289 (472)
Q Consensus 268 G~LA~~aaLA~~~ad~ilIPE~ 289 (472)
|.=....||..+.++..||+|.
T Consensus 300 G~~~V~~Ale~GAVetLLV~d~ 321 (411)
T PRK04011 300 GEEEVRKALEMGAVDTLLISED 321 (411)
T ss_pred cHHHHHHHHHcCCceEEEEecc
Confidence 5566677777767888889875
No 215
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.32 E-value=87 Score=34.52 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCcHHHHH--HHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHH
Q 012056 181 INQVYIIGGDGTQKGAA--VIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (472)
Q Consensus 181 Id~LivIGGdgs~~~a~--~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~ 245 (472)
+|+++|-||+|.--..- ...+++++ |++|.--.|+|++.|+=+.++.+-.
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yARE---------------n~iP~lGIClGmQ~aviE~ARnv~G 395 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARE---------------NNIPFLGICLGMQLAVIEFARNVLG 395 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHh---------------cCCCEEEEchhHHHHHHHHHHHhcC
Confidence 99999999999532222 33445544 3344444599999998777664433
No 216
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=29.23 E-value=1.7e+02 Score=32.36 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=58.4
Q ss_pred eEEEEccCCCCCch-hHHHHHHHHHHHHhcCCcEEEEEc-ccccc-cccCCeeccChhHHhhhhhc-------CCc--cc
Q 012056 93 HACIVTCGGLCPGL-NTVIREIVCGLYHMYGVSKILGID-GGYRG-FYSKNTINLTPKVVNDIHKR-------GGT--IL 160 (472)
Q Consensus 93 ~iaIltsGG~apGm-Na~Ir~vv~~~~~~~~~~~v~Gi~-~G~~G-L~~~~~~~L~~~~v~~~~~~-------GGs--~L 160 (472)
.|+|+++ ..+|| -.=|.++++.....+.+..|+-+. .||.| ..++-+.......++.+... .++ +|
T Consensus 131 ~I~V~tT--C~t~lIGDDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNli 208 (513)
T TIGR01861 131 RMTIYQT--CATALIGDDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYV 208 (513)
T ss_pred eEEEEcc--CchhhccCCHHHHHHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEe
Confidence 5677664 33332 222444444443334334566666 79999 44432211111112222110 111 34
Q ss_pred ccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHH
Q 012056 161 GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (472)
Q Consensus 161 GssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~ 200 (472)
|.-...-|++++.+.|+++||+.+.++.|+.++.....+.
T Consensus 209 G~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~ 248 (513)
T TIGR01861 209 GEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMH 248 (513)
T ss_pred CCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhc
Confidence 4323345789999999999999999999999987655443
No 217
>PLN02335 anthranilate synthase
Probab=29.15 E-value=69 Score=31.19 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchh
Q 012056 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT 234 (472)
Q Consensus 176 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdT 234 (472)
+..++.|++|+-||-++-.......+.+++.+-.+|+.|| |+||+-
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~Ql 103 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQC 103 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHHH
Confidence 4567899999999999876533333333333434556655 999883
No 218
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=28.98 E-value=33 Score=38.21 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHH-HHHHHH-HHcCCCceeeccccccccCccCcC-cccCchhHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VIYEEI-RQRGLKVAVAGIPKTIDNDIPVID-KSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L~~~~-~~~~~~i~vvgIPkTIDNDi~gtd-~S~GfdTA~~~~~~~i~ 244 (472)
...+++.++.--+-|+++++||||.+.-+. =|.+.- -+...+++|--||.==+|++..+= .+-||+-+++.....|
T Consensus 224 HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~ii- 302 (579)
T KOG1116|consen 224 HAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLII- 302 (579)
T ss_pred HHHHHHHhhhccccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHH-
Confidence 356888888888899999999999986442 121110 011457889999999999996643 5667642332222222
Q ss_pred HHHHhhhcCcceEEEEEecCCC--cchHHHHHhhcc
Q 012056 245 AAHVEAESIENGIGVVKLMGRY--CGFIAMYATLGS 278 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVEvMGr~--~G~LA~~aaLA~ 278 (472)
+.--. .--++.||.++++ -+||.+.-||-+
T Consensus 303 --rg~~t--~~dv~~v~~~~~~~~fSfLs~~wGlIA 334 (579)
T KOG1116|consen 303 --RGRLT--PMDVSVVEYAGKDRHFSFLSAAWGLIA 334 (579)
T ss_pred --ccCCC--chheeehhhccCcceEEEEeeeeeeEE
Confidence 21111 2248888888876 567766666654
No 219
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=28.96 E-value=2.7e+02 Score=28.56 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHh--CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcC
Q 012056 167 HDTSKIVDSIQDR--GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID 227 (472)
Q Consensus 167 ~~~~~i~~~l~~~--~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd 227 (472)
.++.++++.+++. +.|+++|.-|-+||.-...+...+- .+++.|||-.=.-.--+.+++|
T Consensus 57 ~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l-~~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 57 EDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLL-DNLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHE-ES-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHh-cCCCCCEEEeCCcCCCcCCCCc
Confidence 3444444444443 5999999999999987555544432 2345566644333333344444
No 220
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.82 E-value=2.7e+02 Score=29.43 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc-ccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~ 247 (472)
.-.+++.+++.--+.-++.|.-.|..++..|.+ .|.+.--||| |.+|..==.-+-.-.+--||+..++++....
T Consensus 138 ~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~----aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~- 212 (346)
T PRK05096 138 FVQFVAKAREAWPDKTICAGNVVTGEMVEELIL----SGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL- 212 (346)
T ss_pred HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH----cCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc-
Confidence 456677777765565566666688888877765 3666544666 6665432211111223456665555544321
Q ss_pred HhhhcCcceEEEEEecC-CCcchHHHHHhhccCCcceEecCC
Q 012056 248 VEAESIENGIGVVKLMG-RYCGFIAMYATLGSRDVDCCLIPE 288 (472)
Q Consensus 248 ~~A~s~~~rv~iVEvMG-r~~G~LA~~aaLA~~~ad~ilIPE 288 (472)
++-||===| |++|+++-+.+ . |||.+.+-.
T Consensus 213 --------gvpiIADGGi~~sGDI~KAla--a-GAd~VMlGs 243 (346)
T PRK05096 213 --------GGQIVSDGGCTVPGDVAKAFG--G-GADFVMLGG 243 (346)
T ss_pred --------CCCEEecCCcccccHHHHHHH--c-CCCEEEeCh
Confidence 233332212 68899986554 4 788887643
No 221
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=28.48 E-value=70 Score=31.86 Aligned_cols=88 Identities=26% Similarity=0.394 Sum_probs=52.3
Q ss_pred EEEEEcccccccccCCeeccChhHHhhhhhcCCc--ccc-cccCC--CChHHHHHHHHHhCCcEEEEEcCCCcHH-----
Q 012056 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT--ILG-TSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQK----- 194 (472)
Q Consensus 125 ~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs--~LG-ssR~~--~~~~~i~~~l~~~~Id~LivIGGdgs~~----- 194 (472)
..+-|.++-.| .....++.....+...+|- +.. |+|.. ..++..+..+...||+.+++++||-.-.
T Consensus 30 d~v~Vt~~~~g----~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~ 105 (274)
T cd00537 30 DFVSVTDGAGG----STRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPG 105 (274)
T ss_pred CEEEeCCCCCC----chhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCC
Confidence 34445554443 1223344445555555542 111 44442 4578888899999999999999986543
Q ss_pred -------HHHHHHHHHHHc---CCCceeeccc
Q 012056 195 -------GAAVIYEEIRQR---GLKVAVAGIP 216 (472)
Q Consensus 195 -------~a~~L~~~~~~~---~~~i~vvgIP 216 (472)
.|..|.+.+++. ++.+.+.+.|
T Consensus 106 ~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 106 AKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 367777776653 4555555555
No 222
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=28.44 E-value=1.1e+02 Score=33.32 Aligned_cols=52 Identities=10% Similarity=0.228 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
+++..+..|.+..+|.++||||.-|-.+ ..|++-+++++.+.-.|-=|.=|+
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT-~~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNT-SHLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHHhCCCEEEECCHHHcC
Confidence 5677888886678999999999999876 447777766665544455555555
No 223
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.68 E-value=5.6e+02 Score=24.64 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccC----cCcccCch--hHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV----IDKSFGFD--TAVEEAQRA 242 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~g----td~S~Gfd--TA~~~~~~~ 242 (472)
..+.++.+..+++|++++...+... ...+.+++.+.++ |||.+ |.+++. ...+++.| .+.+.+++.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~--~~~~i~~~~~~~i--PvV~~----~~~~~~~~~~~~~~v~~d~~~~g~~~~~~ 115 (272)
T cd06313 44 QVAAIENMASQGWDFIAVDPLGIGT--LTEAVQKAIARGI--PVIDM----GTLIAPLQINVHSFLAPDNYFMGASVAQA 115 (272)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChHH--hHHHHHHHHHCCC--cEEEe----CCCCCCCCCceEEEECCCcHHHHHHHHHH
Confidence 4467788889999999998654221 1223344444454 45554 333321 11223333 344444444
Q ss_pred HHHHHHhhhcCcceEEEEEe-------cCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhC
Q 012056 243 INAAHVEAESIENGIGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKEN 310 (472)
Q Consensus 243 i~~i~~~A~s~~~rv~iVEv-------MGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~ 310 (472)
+-+ ....+ +++.++.- .-|..||........ +...+-+.+..++.+ .-.+.+++.++++
T Consensus 116 l~~---~~~g~-~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 181 (272)
T cd06313 116 LCN---AMGGK-GKIAMLQGALGHTGAQGRAQGFNDVIKKYP--DIEVVDEQPANWDVS---KAARIWETWLTKY 181 (272)
T ss_pred HHH---HcCCC-ceEEEEECCCCCcchhHHHHHHHHHHHhCC--CCEEEeccCCCCCHH---HHHHHHHHHHHhC
Confidence 322 22233 46777741 236677776654321 233333333445443 3345555555543
No 224
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=27.64 E-value=2.1e+02 Score=30.98 Aligned_cols=101 Identities=24% Similarity=0.277 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc-ccccccCccCcCcccCch--hHHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDKSFGFD--TAVEEAQRAINA 245 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~gtd~S~Gfd--TA~~~~~~~i~~ 245 (472)
..+.++.+++.-.+..++.|+--|...|..+.+ .|.+.-.||+ |.+|.-.-..++ +|.. ||+..+.+++.
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~----aGad~i~vg~g~G~~~~t~~~~~--~g~p~~~~i~~~~~~~~- 324 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALID----AGADGLRVGIGPGSICTTRIVAG--VGVPQITAVYDVAEYAA- 324 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH----hCCCEEEECCCCCcCCccceecC--CCccHHHHHHHHHHHHh-
Confidence 445666666654577777778888888877765 3666555666 776643221111 3333 44444444332
Q ss_pred HHHhhhcCcceEEEEEecC--CCcchHHHHHhhccCCcceEecCC
Q 012056 246 AHVEAESIENGIGVVKLMG--RYCGFIAMYATLGSRDVDCCLIPE 288 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMG--r~~G~LA~~aaLA~~~ad~ilIPE 288 (472)
.. ++-++ ..| |+.|.++... |. ||+.+.+-.
T Consensus 325 ------~~--~vpvi-adGGi~~~~di~kAl--a~-GA~~V~~G~ 357 (450)
T TIGR01302 325 ------QS--GIPVI-ADGGIRYSGDIVKAL--AA-GADAVMLGS 357 (450)
T ss_pred ------hc--CCeEE-EeCCCCCHHHHHHHH--Hc-CCCEEEECc
Confidence 11 23322 233 5667776544 44 688777643
No 225
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=27.59 E-value=3.4e+02 Score=26.28 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=25.1
Q ss_pred hcCCcccccccCCCChHHHHHHHHH--hCCcEEEEEcCCCcH
Q 012056 154 KRGGTILGTSRGGHDTSKIVDSIQD--RGINQVYIIGGDGTQ 193 (472)
Q Consensus 154 ~~GGs~LGssR~~~~~~~i~~~l~~--~~Id~LivIGGdgs~ 193 (472)
..|||.|.+. +.++++++.+.+ .+.+-++|.+|-+..
T Consensus 5 K~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~ 43 (227)
T cd04234 5 KFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGGV 43 (227)
T ss_pred EECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCcc
Confidence 4688888653 245566655555 688999999775543
No 226
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.17 E-value=1.8e+02 Score=22.21 Aligned_cols=51 Identities=22% Similarity=0.478 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccc
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
...+++++..++.|++++.+- --+++.+...+.+..++.+++ .+.|+--++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iT-Dh~~~~~~~~~~~~~~~~gi~-~i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAIT-DHGNLFGAVEFYKAAKKAGIK-PIIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEe-eCCcccCHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 357899999999999987655 444788888888887777775 356665443
No 227
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=26.96 E-value=64 Score=27.87 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
..+.+.+++..++++|| |+|||-..-+. .=|++.+++.|+ +++|=
T Consensus 48 ~~d~~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~gi--~vfGP 92 (100)
T PF02844_consen 48 ITDPEELADFAKENKID-LVVVGPEAPLV--AGLADALRAAGI--PVFGP 92 (100)
T ss_dssp TT-HHHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES-
T ss_pred CCCHHHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCCC--cEECc
Confidence 35789999999999999 77888777664 456788877775 46653
No 228
>PLN00197 beta-amylase; Provisional
Probab=26.62 E-value=3.8e+02 Score=30.11 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhCCcEEEE------Ec--CCCc--HHHHHHHHHHHHHcCCCceee----------------cccccccc-
Q 012056 169 TSKIVDSIQDRGINQVYI------IG--GDGT--QKGAAVIYEEIRQRGLKVAVA----------------GIPKTIDN- 221 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~Liv------IG--Gdgs--~~~a~~L~~~~~~~~~~i~vv----------------gIPkTIDN- 221 (472)
++.-+..||..|+|++.+ += |.+- ..+=.+|++.+++.|+++++| -+|+-+-+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~ 208 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEE 208 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 566678889999999864 22 3332 445577888888888877664 37776543
Q ss_pred -----CccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcC-cceEEEEEecCCCcc
Q 012056 222 -----DIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESI-ENGIGVVKLMGRYCG 268 (472)
Q Consensus 222 -----Di~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~-~~rv~iVEvMGr~~G 268 (472)
||..||. |+|.| |+++...+....-+++-... ..-|.=|++=.+-||
T Consensus 209 g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~G 278 (573)
T PLN00197 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAG 278 (573)
T ss_pred hccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCc
Confidence 8998985 89998 55999999998888775542 334555555444443
No 229
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=26.55 E-value=43 Score=31.01 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=30.7
Q ss_pred ccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 163 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 163 sR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
-|.++.+.+.++++++.+++.+|.+-|-...-. --++-. ...||||+|-.
T Consensus 38 HR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 38 HRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE-
T ss_pred cCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeecC
Confidence 355566777888888778888887766654332 223321 36789999954
No 230
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=26.36 E-value=28 Score=37.12 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=37.8
Q ss_pred hCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHH--HHHHHHHHHH
Q 012056 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE--AQRAINAAHV 248 (472)
Q Consensus 179 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~--~~~~i~~i~~ 248 (472)
.-+|.++++|||||.--|..|++. -.+ ||. ++..-|+||-|-... ..+.+.++..
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq~----~VP-PV~----------sFslGslGFLtpf~f~~f~~~l~~v~~ 223 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLFQR----SVP-PVL----------SFSLGSLGFLTPFPFANFQEQLARVLN 223 (409)
T ss_pred cceeEEEEecCCccEEEehhhhcC----CCC-CeE----------EeecCCccccccccHHHHHHHHHHHhc
Confidence 459999999999998778877752 111 222 455669999997654 3566666543
No 231
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.30 E-value=7.2e+02 Score=25.49 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=91.4
Q ss_pred EEccCCCCCchh-HHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCc-ccccccC-----CCC
Q 012056 96 IVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRG-----GHD 168 (472)
Q Consensus 96 IltsGG~apGmN-a~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~-----~~~ 168 (472)
|+.|||+.==++ .-+..+++.+.. .+..+. ++-+-+..+. +...++.+.++.+...|=. .+++.-. .+.
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~~v~~--iri~Tr~~v~-~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-IDHVKI--VRFHTRVPVA-DPARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CCCccE--EEEeCCCccc-ChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 677888876554 567888877754 232222 3334444322 1234566666666555412 2433221 134
Q ss_pred hHHHHHHHHHhCCcEEE---EE-cCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGINQVY---II-GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~Li---vI-GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~ 244 (472)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|...--+.... .++|+ --|.+..+...+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g~---~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPGT---AHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCCc---ccccCcHHHHHHHHH
Confidence 66788889999987643 33 556777777778777766665321121111 22232 345677777777777
Q ss_pred HHHHhhhcCcceEEEEEecCCC
Q 012056 245 AAHVEAESIENGIGVVKLMGRY 266 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVEvMGr~ 266 (472)
.++...++.-.--+++|..|..
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7776555543345888988754
No 232
>PRK09526 lacI lac repressor; Reviewed
Probab=25.98 E-value=6.6e+02 Score=24.92 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCcEEEEEcCCC
Q 012056 170 SKIVDSIQDRGINQVYIIGGDG 191 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdg 191 (472)
.+.++.|...++|++++.+...
T Consensus 110 ~~~l~~l~~~~vdGiii~~~~~ 131 (342)
T PRK09526 110 QAAVNELLAQRVSGVIINVPLE 131 (342)
T ss_pred HHHHHHHHhcCCCEEEEecCCC
Confidence 4677888899999999975433
No 233
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.97 E-value=1.9e+02 Score=28.52 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=61.5
Q ss_pred cccccCccCcCcccCchhHHHHHHHHHH-HHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccc
Q 012056 217 KTIDNDIPVIDKSFGFDTAVEEAQRAIN-AAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG 295 (472)
Q Consensus 217 kTIDNDi~gtd~S~GfdTA~~~~~~~i~-~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~ 295 (472)
.|+.-|+.+-....|..-+ + +.+.++ .+.....++.+....-++-|+.-=-+|.++.||. ++++++.=|-...+|.
T Consensus 95 ~tV~~evafg~~n~g~~~~-e-~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD~ 171 (235)
T COG1122 95 PTVEDEVAFGLENLGLPRE-E-IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLDP 171 (235)
T ss_pred CcHHHHHhhchhhcCCCHH-H-HHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCCH
Confidence 5777888777778888775 2 222222 2333333333345677788888888999999999 7999888776555553
Q ss_pred --hhhHHHHHHHHHHhC-CcEEEEEe
Q 012056 296 --EGGLYEFIEKRLKEN-GHMVIVIA 318 (472)
Q Consensus 296 --~~~~~~~i~~r~~~~-~~~vIvva 318 (472)
.+.+++.++ +++.. +..+|+++
T Consensus 172 ~~~~~l~~~l~-~L~~~~~~tii~~t 196 (235)
T COG1122 172 KGRRELLELLK-KLKEEGGKTIIIVT 196 (235)
T ss_pred HHHHHHHHHHH-HHHhcCCCeEEEEe
Confidence 234555444 34444 45566554
No 234
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=25.90 E-value=4.4e+02 Score=25.93 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhh-hhhcCCcccccccCC---CChHHHHHHHHHhC
Q 012056 105 GLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND-IHKRGGTILGTSRGG---HDTSKIVDSIQDRG 180 (472)
Q Consensus 105 GmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~-~~~~GGs~LGssR~~---~~~~~i~~~l~~~~ 180 (472)
.-....+.+...+...++..+|.-+..-. .+-.-....+.. +...|.++.++...+ .++...+..+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~ 190 (334)
T cd06342 117 RDDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAAN 190 (334)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcC
Confidence 33455556665544344555655444321 111111122222 334577777665543 57889999999999
Q ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 181 Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
.+.+++.| .+. .+..+.+.+++.|++.++++
T Consensus 191 ~~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 191 PDAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred CCEEEEcC-cch--hHHHHHHHHHHcCCCCcEEe
Confidence 99887665 332 23446666777787655554
No 235
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=25.49 E-value=1.1e+02 Score=35.89 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~ 200 (472)
..+++++.+++.++|.+|-|||--+++.|..++
T Consensus 527 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 527 TVRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 367889999999999999999999999988775
No 236
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=25.01 E-value=1.6e+02 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=35.6
Q ss_pred EecCCCcchHHHHHhhccCCcceEecCCCCCCcc--chhhHHHHHHHHHHhCCcEEEEEeCC
Q 012056 261 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLE--GEGGLYEFIEKRLKENGHMVIVIAEG 320 (472)
Q Consensus 261 EvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~--~~~~~~~~i~~r~~~~~~~vIvvaEG 320 (472)
+.-|+..=-+++..+|+. .++++++=|---.+| ..+.+.+.+++..++.+..+|+++.-
T Consensus 137 ~LS~G~~qrv~laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 137 ELSGGEKQRISLIRNLQF-MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 444444445788999998 799999855433343 33344555554334446677777643
No 237
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=24.89 E-value=1.3e+02 Score=31.50 Aligned_cols=206 Identities=15% Similarity=0.218 Sum_probs=106.5
Q ss_pred CCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---eeccChhHHhhhhhcCCcccccccCC
Q 012056 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGG 166 (472)
Q Consensus 90 ~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGssR~~ 166 (472)
...||.|+=+|| |-|+++..+.+.. -.+-+.+.+.-..++|.... -+.+......+...-+--.+|-.-..
T Consensus 10 ~~~~I~VIGvGg---~G~n~v~~m~~~~---~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAe 83 (338)
T COG0206 10 LKARIKVIGVGG---AGGNAVNRMIEEG---VEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAAE 83 (338)
T ss_pred cCceEEEEEeCC---cchHHHHHHHHhh---hCceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHHH
Confidence 457999999987 5567777776643 23458899988888886433 11121111111100000011110012
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCc--HHH-HHHHHHHHHHcCC-CceeeccccccccCccCcCcccCchhHHHHHHHH
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGT--QKG-AAVIYEEIRQRGL-KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs--~~~-a~~L~~~~~~~~~-~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~ 242 (472)
++.+++.+.|+. .|++|++=|.|- -++ |-.+++.++++|. -+.|+..|-+-.- . .-.+.+.+.
T Consensus 84 e~~~~I~~~l~g--~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG-------~----~r~~~A~~g 150 (338)
T COG0206 84 ESIEEIEEALKG--ADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEG-------S----PRMENAEEG 150 (338)
T ss_pred HHHHHHHHHhcc--CCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcC-------c----hHHHHHHHH
Confidence 356777777754 567777654433 223 4567777777653 3445555543211 1 345566777
Q ss_pred HHHHHHhhhcC---cceEEEEEecCCCcchHHHHHhh-------ccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCc
Q 012056 243 INAAHVEAESI---ENGIGVVKLMGRYCGFIAMYATL-------GSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGH 312 (472)
Q Consensus 243 i~~i~~~A~s~---~~rv~iVEvMGr~~G~LA~~aaL-------A~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~ 312 (472)
|..++..+-+. ++ .-++|......-|-|...+. .+ =.|++..|- -..+ .++.++.-++..|.
T Consensus 151 i~~L~~~~DtlIvi~N-dkll~~~~~~~~~~Af~~ad~vl~~~v~~-i~e~I~~~g-linv-----DfaDv~~vm~~~G~ 222 (338)
T COG0206 151 IEELREVVDTLIVIPN-DKLLKGKDKTPIAEAFNEADDVLGNAVKG-ITELITKPG-LVNV-----DFADVRTVMKGGGF 222 (338)
T ss_pred HHHHHHhCCcEEEEec-HHHHhccCcccHHHHHHHHHHHHHHHHHH-HHHHhccCc-eEee-----cHHHHHHHHhcCCc
Confidence 77777765442 11 22445555333344433221 11 124444441 1122 24556777777777
Q ss_pred EEEEEeCCCC
Q 012056 313 MVIVIAEGAG 322 (472)
Q Consensus 313 ~vIvvaEG~~ 322 (472)
+.+-+.+...
T Consensus 223 A~mG~g~~~~ 232 (338)
T COG0206 223 ALMGIGRASG 232 (338)
T ss_pred eeEEEeeccc
Confidence 8777766654
No 238
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=24.83 E-value=48 Score=33.16 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCc
Q 012056 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (472)
.+++.+.++..+.|.++-+||--..+.++..+.. .+++.+.||-+.+||=
T Consensus 64 ~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 64 VEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHDG 113 (250)
T ss_dssp HHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSGG
T ss_pred HHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecccccccc
Confidence 5567777777899999999997766666655543 2577999999999993
No 239
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.83 E-value=5.4e+02 Score=25.89 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=42.0
Q ss_pred hhhhcCCcccccccC---CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 151 DIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 151 ~~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
.+...|+++..+.+. ..++...+..|++.+-|.+++.+.... +..+.+.+++.|+++++++
T Consensus 161 ~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 161 ALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPE---GAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChH---HHHHHHHHHHcCCCCcEec
Confidence 344567777766554 357889999999999999998874332 3345566677788765554
No 240
>PLN02803 beta-amylase
Probab=24.79 E-value=4.3e+02 Score=29.57 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhCCcEEEE------Ec--CCCc--HHHHHHHHHHHHHcCCCceee----------------ccccccc--
Q 012056 169 TSKIVDSIQDRGINQVYI------IG--GDGT--QKGAAVIYEEIRQRGLKVAVA----------------GIPKTID-- 220 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~Liv------IG--Gdgs--~~~a~~L~~~~~~~~~~i~vv----------------gIPkTID-- 220 (472)
++.-+..||..|+|++.+ += |.+- ..+-.+|++.+++.|+++++| -+|+-+-
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~ 188 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE 188 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556677888999999864 22 3332 445577888888888876654 3777654
Q ss_pred ----cCccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCc-ceEEEEEecCCCcc
Q 012056 221 ----NDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESIE-NGIGVVKLMGRYCG 268 (472)
Q Consensus 221 ----NDi~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~~-~rv~iVEvMGr~~G 268 (472)
.||..||. |+|.| |+++...+....-+++-...- .-|.=||+=.+-||
T Consensus 189 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlGP~G 258 (548)
T PLN02803 189 MSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMGPCG 258 (548)
T ss_pred hhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCc
Confidence 48988885 88888 788999998888887755432 33555555444333
No 241
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.64 E-value=3.1e+02 Score=25.42 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=44.1
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..+|.++ || .|+.. ..+...+...|++.++.|.++||- + .+-....++.|...+-.+|=..-+.+..|
T Consensus 48 ~~~ifll--G~-~~~~~---~~~~~~l~~~yP~l~ivg~~~g~f---~---~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 48 GKRIFLL--GG-SEEVL---EKAAANLRRRYPGLRIVGYHHGYF---D---EEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred CCeEEEE--eC-CHHHH---HHHHHHHHHHCCCeEEEEecCCCC---C---hhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 3466655 44 34443 444445556788999999999987 1 11122234455555544443333333444
Q ss_pred HHHHHH-HHhCCcEEEEEcC
Q 012056 171 KIVDSI-QDRGINQVYIIGG 189 (472)
Q Consensus 171 ~i~~~l-~~~~Id~LivIGG 189 (472)
..+..+ .+.+....+.+||
T Consensus 116 ~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 116 RWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred HHHHHHHHHCCCCEEEEECc
Confidence 444333 3334443444444
No 242
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=24.55 E-value=9.2e+02 Score=26.11 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=98.9
Q ss_pred EEEccCCCCCchhH-HHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCC-----CC
Q 012056 95 CIVTCGGLCPGLNT-VIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-----HD 168 (472)
Q Consensus 95 aIltsGG~apGmNa-~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-----~~ 168 (472)
-|+.|||+.==+++ .+..++..+...-+ .+.+.+ |-+-.+-- ...+|.+.+..+...+=..++++-.. +.
T Consensus 158 ~VlLSGGDPLll~d~~L~~iL~~L~~Iph-V~~IRI--~TR~pvv~-P~RIT~ell~~Lk~~~~~~v~~h~nhp~Eit~~ 233 (417)
T TIGR03820 158 DVLLSGGDPLLLSDDYLDWILTELRAIPH-VEVIRI--GTRVPVVL-PQRITDELVAILKKHHPVWLNTHFNHPREITAS 233 (417)
T ss_pred EEEEeCCccccCChHHHHHHHHHHhhcCC-CceEEE--eecccccc-ccccCHHHHHHHHhcCCeEEEEeCCChHhChHH
Confidence 37889999887777 55666666644222 233333 33322211 23466666665555543456554331 23
Q ss_pred hHHHHHHHHHhCCc----EEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHH
Q 012056 169 TSKIVDSIQDRGIN----QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (472)
Q Consensus 169 ~~~i~~~l~~~~Id----~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~ 244 (472)
..++++.|++.||. ..+.=|=|++-.....|.+.+.+.|+..==+..+ ..+.|+. -|.|-+..+.+.+.
T Consensus 234 a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~----d~v~G~~---hFrv~~~~g~~I~~ 306 (417)
T TIGR03820 234 SKKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQC----DLSEGLS---HFRTPVGKGIEIIE 306 (417)
T ss_pred HHHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeec----cCCCCcc---cccCcHHHHHHHHH
Confidence 56778888888875 4556677899888888988887766421111111 1224443 59999999999999
Q ss_pred HHHHhhhcCcceEEEEEecCC
Q 012056 245 AAHVEAESIENGIGVVKLMGR 265 (472)
Q Consensus 245 ~i~~~A~s~~~rv~iVEvMGr 265 (472)
.++...++.-.--++++..|.
T Consensus 307 ~lr~~~sG~~vP~~v~d~pgg 327 (417)
T TIGR03820 307 SLIGHTSGFAVPTYVVDAPGG 327 (417)
T ss_pred HHHHhCCCCCceEEEEecCCC
Confidence 998777665444689998874
No 243
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=24.51 E-value=9.3e+02 Score=26.16 Aligned_cols=139 Identities=20% Similarity=0.217 Sum_probs=88.3
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHH-
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK- 171 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~- 171 (472)
.+||--+ ||-==.||+++.+.+.. .+.-+ .++.|.+.|+.. ||- |.=++.|+..
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~--~~~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLN--STRKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhh--cCCcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4577665 55444689998876643 22222 367888888776 775 4444556544
Q ss_pred HHHHHHHhCCcE-EEEEcCCC-------------cHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHH
Q 012056 172 IVDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (472)
Q Consensus 172 i~~~l~~~~Id~-LivIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~ 237 (472)
+.+.-++.+++. .+++|||- +|..|..+.+...+.|+. -|+|=.|++ ..+-..-+.-+|-++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 344566788988 99999983 455566665555566886 688888887 222224556688888
Q ss_pred HHHHHHHHHHHhhhc--CcceEEEE
Q 012056 238 EAQRAINAAHVEAES--IENGIGVV 260 (472)
Q Consensus 238 ~~~~~i~~i~~~A~s--~~~rv~iV 260 (472)
.+++.|...-.++.. ...-+++|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 888888755555442 22346777
No 244
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=24.32 E-value=2.4e+02 Score=28.76 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccc
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (472)
.++++.+..|.+ .+|.+|||||--|-.+ .+|++-+++.+.+.-.|-=+.=||
T Consensus 196 ~~RQ~a~~~la~-~vD~miVVGg~nSsNT-~rL~ei~~~~~~~t~~Ie~~~el~ 247 (280)
T TIGR00216 196 QNRQDAVKELAP-EVDLMIVIGGKNSSNT-TRLYEIAEEHGPPSYLIETAEELP 247 (280)
T ss_pred HHHHHHHHHHHh-hCCEEEEECCCCCchH-HHHHHHHHHhCCCEEEECChHHCC
Confidence 357777777755 5999999999999875 567777777665433443344443
No 245
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.15 E-value=1.1e+02 Score=30.51 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (472)
..++.++.+++.|++++++- |....-...+.+.++++|++.-.+.-|.|
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 35788999999999999998 77888888888889999988666777777
No 246
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=23.93 E-value=2e+02 Score=29.35 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=32.5
Q ss_pred HHhhhhhcCCcccccccCCCChHHH-----------------------------HHHHHHhC-CcEEEE-EcCCCcHHHH
Q 012056 148 VVNDIHKRGGTILGTSRGGHDTSKI-----------------------------VDSIQDRG-INQVYI-IGGDGTQKGA 196 (472)
Q Consensus 148 ~v~~~~~~GGs~LGssR~~~~~~~i-----------------------------~~~l~~~~-Id~Liv-IGGdgs~~~a 196 (472)
.|......||.++-+.|+.+++|++ .|.|++-+ ||+||+ +||-|-+.+.
T Consensus 111 Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGllSgv 190 (323)
T KOG1251|consen 111 KVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLLSGV 190 (323)
T ss_pred HHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhCccceEEEeecCcchhhHH
Confidence 5777778888888777764433332 34444443 888876 5666666554
Q ss_pred HHHH
Q 012056 197 AVIY 200 (472)
Q Consensus 197 ~~L~ 200 (472)
...+
T Consensus 191 Alaa 194 (323)
T KOG1251|consen 191 ALAA 194 (323)
T ss_pred HHHH
Confidence 4443
No 247
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.53 E-value=1.7e+02 Score=27.44 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=35.5
Q ss_pred EEecCCCcchHHHHHhhccCC--cceEecCCC--CCCccchhhHHHHHHHHHHhCCcEEEEEeC
Q 012056 260 VKLMGRYCGFIAMYATLGSRD--VDCCLIPES--PFYLEGEGGLYEFIEKRLKENGHMVIVIAE 319 (472)
Q Consensus 260 VEvMGr~~G~LA~~aaLA~~~--ad~ilIPE~--~~~l~~~~~~~~~i~~r~~~~~~~vIvvaE 319 (472)
-++.|...=-+++..+|+. . ++++++=|- .+|.+..+.+.+.+++. .+.+..+|+++-
T Consensus 86 ~~LSgGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tvIivSH 147 (176)
T cd03238 86 STLSGGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEH 147 (176)
T ss_pred CcCCHHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCCEEEEEeC
Confidence 3455555555788888888 8 999998554 34444344555655543 334667766654
No 248
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.33 E-value=6.4e+02 Score=23.81 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCc-CcccCchhHHHHHHHHHHHHHH
Q 012056 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINAAHV 248 (472)
Q Consensus 170 ~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gt-d~S~GfdTA~~~~~~~i~~i~~ 248 (472)
.+.++.+...++|++++..++.... ..+.+++.++++ ++|.+ |++.+.. -.+++.|- .+....+.+.+..
T Consensus 45 ~~~l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~~i--pvV~~----~~~~~~~~~~~V~~d~-~~~g~~~~~~l~~ 115 (273)
T cd06305 45 ADQIDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDAGI--PVVAF----DVDSDNPKVNNTTQDD-YSLARLSLDQLVK 115 (273)
T ss_pred HHHHHHHHHcCCCEEEEecCChhhh--HHHHHHHHHcCC--CEEEe----cCCCCCCccceeeech-HHHHHHHHHHHHH
Confidence 3566677778999999998764321 222334445554 45544 4433221 12455543 1223334444444
Q ss_pred hhhcCcceEEEEE
Q 012056 249 EAESIENGIGVVK 261 (472)
Q Consensus 249 ~A~s~~~rv~iVE 261 (472)
....+ ++|.++-
T Consensus 116 ~~~g~-~~i~~i~ 127 (273)
T cd06305 116 DLGGK-GNVGYVN 127 (273)
T ss_pred HhCCC-CCEEEEE
Confidence 33344 5677775
No 249
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.15 E-value=9.6e+02 Score=25.84 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=67.7
Q ss_pred hHHhhhhhcCCcccc--cccC-CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc-ccccccC
Q 012056 147 KVVNDIHKRGGTILG--TSRG-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDND 222 (472)
Q Consensus 147 ~~v~~~~~~GGs~LG--ssR~-~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDND 222 (472)
+.++.+...|=.+|= ++.. +....++++.+++.-=+.+++.|+-.|...|..+.+ .|.+.-.+|+ |.||.--
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~----aGaD~I~vG~g~Gs~c~t 231 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS----VGADCLKVGIGPGSICTT 231 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH----cCCCEEEECCCCCcCCcc
Confidence 455555555555443 3333 345667777787643467788889999998888765 3776555675 6665322
Q ss_pred ccCcCcccCc--hhHHHHHHHHHHHHHHhhhcCcceEEEEEecC--CCcchHHHHHhhccCCcceEecC
Q 012056 223 IPVIDKSFGF--DTAVEEAQRAINAAHVEAESIENGIGVVKLMG--RYCGFIAMYATLGSRDVDCCLIP 287 (472)
Q Consensus 223 i~gtd~S~Gf--dTA~~~~~~~i~~i~~~A~s~~~rv~iVEvMG--r~~G~LA~~aaLA~~~ad~ilIP 287 (472)
-.-+ .+|. -||+..+.+.++. . .+-|| ..| |+.|.++-..+ . |||.+.+-
T Consensus 232 r~~~--g~g~p~ltai~~v~~~~~~-------~--~vpVI-AdGGI~~~~Di~KALa--l-GA~aVmvG 285 (404)
T PRK06843 232 RIVA--GVGVPQITAICDVYEVCKN-------T--NICII-ADGGIRFSGDVVKAIA--A-GADSVMIG 285 (404)
T ss_pred eeec--CCCCChHHHHHHHHHHHhh-------c--CCeEE-EeCCCCCHHHHHHHHH--c-CCCEEEEc
Confidence 1101 1233 2455555544331 1 12222 345 46677765444 4 67777663
No 250
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=23.10 E-value=1.8e+02 Score=27.80 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHHHhhccCCcceEecCCCCCCcc--chhhHHHHHHHHHHhCCcEEEEEeC
Q 012056 270 IAMYATLGSRDVDCCLIPESPFYLE--GEGGLYEFIEKRLKENGHMVIVIAE 319 (472)
Q Consensus 270 LA~~aaLA~~~ad~ilIPE~~~~l~--~~~~~~~~i~~r~~~~~~~vIvvaE 319 (472)
+++..+|+. +++++++=|---.+| ....+.+.|++..++++..+|+++.
T Consensus 154 l~la~al~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH 204 (233)
T PRK11629 154 VAIARALVN-NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204 (233)
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 678888888 799999866433333 3334555555333334667777664
No 251
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=22.84 E-value=6.4e+02 Score=23.70 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=42.9
Q ss_pred eEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChHHH
Q 012056 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (472)
Q Consensus 93 ~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (472)
.|||+...=+.|..+.+++++-+.+.. ++ .++.-+. +..........
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~ 47 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYK-KG-YKLILCN-------------------------------SDNDPEKEREY 47 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHH-CC-CeEEEec-------------------------------CCccHHHHHHH
Confidence 377888777788899999998777643 33 2332100 01111123466
Q ss_pred HHHHHHhCCcEEEEEcCCCc
Q 012056 173 VDSIQDRGINQVYIIGGDGT 192 (472)
Q Consensus 173 ~~~l~~~~Id~LivIGGdgs 192 (472)
++.+...++|++++.+.+..
T Consensus 48 i~~~~~~~~dgiii~~~~~~ 67 (265)
T cd06291 48 LEMLRQNQVDGIIAGTHNLG 67 (265)
T ss_pred HHHHHHcCCCEEEEecCCcC
Confidence 67888999999999987644
No 252
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=22.79 E-value=1.8e+02 Score=27.77 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=36.3
Q ss_pred EecCCCcchHHHHHhhccCCcceEecCCCCCCcc--chhhHHHHHHHHHHhCCcEEEEEeC
Q 012056 261 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLE--GEGGLYEFIEKRLKENGHMVIVIAE 319 (472)
Q Consensus 261 EvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~--~~~~~~~~i~~r~~~~~~~vIvvaE 319 (472)
++-|+..=-+++..+++. .++++++=|-.-.+| ....+.+.|++..++.+..+|+++-
T Consensus 129 ~LS~G~~qrv~laral~~-~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 129 QLSGGQRQRVALARCLVR-EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 444444456788889998 799999865433333 3344566666544444667777664
No 253
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=22.68 E-value=2.2e+02 Score=28.56 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=39.0
Q ss_pred ceEEEEEecCCCcchHHHHHhhccCCc---ceEecCCCCCCccchhhHHHHHHHHHHhC--CcEEEEEeCC
Q 012056 255 NGIGVVKLMGRYCGFIAMYATLGSRDV---DCCLIPESPFYLEGEGGLYEFIEKRLKEN--GHMVIVIAEG 320 (472)
Q Consensus 255 ~rv~iVEvMGr~~G~LA~~aaLA~~~a---d~ilIPE~~~~l~~~~~~~~~i~~r~~~~--~~~vIvvaEG 320 (472)
..+.++|+ ..||+.+.||+-...+ .++|+|+.|. +..+.|++++++. .+.-|+++.-
T Consensus 89 ~~~~i~~~---~~G~v~anAGID~SN~~~g~v~LLP~DPd------~sA~~ir~~l~~~~g~~v~VIItDt 150 (243)
T TIGR01916 89 TPFLITET---RHGHVCANAGIDESNVGNGELLLLPEDPD------ASAEKIRRGLRELTGVDVGVIITDT 150 (243)
T ss_pred CCeEEEEe---cCceEEeccccccccCCCCeEEecCCChH------HHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45788886 6789988888864333 3789999874 4567777777653 3444666654
No 254
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.51 E-value=8.1e+02 Score=24.74 Aligned_cols=114 Identities=24% Similarity=0.167 Sum_probs=0.0
Q ss_pred ccccccCccCcCccc-Cchh-HHHHHHHHHHHHHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcc-eEecCCCCCC
Q 012056 216 PKTIDNDIPVIDKSF-GFDT-AVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVD-CCLIPESPFY 292 (472)
Q Consensus 216 PkTIDNDi~gtd~S~-GfdT-A~~~~~~~i~~i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad-~ilIPE~~~~ 292 (472)
|+|=..|..|.++++ -||- |++.+.+.-+. .+..=.++=+||-...-=++.-+||- |+| .++|.-..|.
T Consensus 21 ~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~-------~~~~eV~vlt~Gp~~a~~~lr~aLAm-GaDraili~d~~~~ 92 (260)
T COG2086 21 PDTGTLDRSGVPLSINPFDLNAVEEALRLKEK-------GYGGEVTVLTMGPPQAEEALREALAM-GADRAILITDRAFA 92 (260)
T ss_pred cCCCccccCCCCcccChhhHHHHHHHHHhhcc-------CCCceEEEEEecchhhHHHHHHHHhc-CCCeEEEEeccccc
Q ss_pred ccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhHHHHhhhhcccccCCccccchHHHHHHHH
Q 012056 293 LEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKI 355 (472)
Q Consensus 293 l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I 355 (472)
--+...--..|.+.+++.+.-+|+..+.+.+.+. +-+|..|++++
T Consensus 93 ~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t------------------~qvg~~lAe~L 137 (260)
T COG2086 93 GADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT------------------GQVGPLLAELL 137 (260)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEecccccCCc------------------cchHHHHHHHh
No 255
>PLN02705 beta-amylase
Probab=22.51 E-value=5.1e+02 Score=29.55 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhCCcEEEE------Ec--CCCc--HHHHHHHHHHHHHcCCCceee----------------cccccccc-
Q 012056 169 TSKIVDSIQDRGINQVYI------IG--GDGT--QKGAAVIYEEIRQRGLKVAVA----------------GIPKTIDN- 221 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~Liv------IG--Gdgs--~~~a~~L~~~~~~~~~~i~vv----------------gIPkTIDN- 221 (472)
++.-+..||..|+|++.+ += |.+- ..+-.+|++.+++.|+++.+| -+|+-|-+
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~ 349 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEI 349 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHh
Confidence 455678899999999964 22 3332 445578888888889877664 37877654
Q ss_pred -----CccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcC--cceEEEEEecCCCcchH
Q 012056 222 -----DIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESI--ENGIGVVKLMGRYCGFI 270 (472)
Q Consensus 222 -----Di~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~--~~rv~iVEvMGr~~G~L 270 (472)
||..||. |+|.| |+++...+.....+++-... ..-|.=||+=.+-||-|
T Consensus 350 g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GEL 422 (681)
T PLN02705 350 GKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGEL 422 (681)
T ss_pred cccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccc
Confidence 8988885 88888 67899999988887775542 12466677766555544
No 256
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=22.38 E-value=5.1e+02 Score=26.65 Aligned_cols=63 Identities=22% Similarity=0.399 Sum_probs=43.3
Q ss_pred HhhhhhcCCcccccccC---CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 149 VNDIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 149 v~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
...+...|+.+.+..+. ..|+...+..++..+-|++++ +|++. . +..+.+.+++.|++.++++
T Consensus 182 ~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~-~~~~~k~~~~~G~~~~~i~ 247 (369)
T PRK15404 182 KDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-E-MGQILRQAREAGLKTQFMG 247 (369)
T ss_pred HHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-H-HHHHHHHHHHCCCCCeEEe
Confidence 34466778888776655 358899999999999998775 44443 2 2334566677788766653
No 257
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=22.26 E-value=1e+02 Score=30.85 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCc----------HHHHHHHHHHHHHc--CCCceeecccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGT----------QKGAAVIYEEIRQR--GLKVAVAGIPK 217 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs----------~~~a~~L~~~~~~~--~~~i~vvgIPk 217 (472)
.++..+..+...||+.+++++||-. +..|..|.+.+++. .+.|-+++.|-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4667778889999999999999976 23356566655543 34455555553
No 258
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=22.10 E-value=6.4e+02 Score=27.75 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc-ccccccCccCcCc--ccCch--hHHHHHHHHHHH
Q 012056 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDK--SFGFD--TAVEEAQRAINA 245 (472)
Q Consensus 171 ~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~gtd~--S~Gfd--TA~~~~~~~i~~ 245 (472)
+.++.+++.--+..++.|.-.|...|..+.+ .|.+.-.+|+ |.++. .|.. -+|.. ||+..+.++++
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~----aGad~I~vg~g~Gs~~----~t~~~~~~g~p~~~ai~~~~~~~~- 341 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLID----AGADGLRIGMGSGSIC----ITQEVCAVGRPQASAVYHVARYAR- 341 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHH----cCCCEEEECCcCCccc----ccchhccCCCChHHHHHHHHHHHh-
Confidence 3455555543355555555566666665543 3555444454 55542 1111 13333 34433333322
Q ss_pred HHHhhhcCcceEEEEEecC-CCcchHHHHHhhccCCcceEecCC
Q 012056 246 AHVEAESIENGIGVVKLMG-RYCGFIAMYATLGSRDVDCCLIPE 288 (472)
Q Consensus 246 i~~~A~s~~~rv~iVEvMG-r~~G~LA~~aaLA~~~ad~ilIPE 288 (472)
. ..+-++=-=| |+.|.++-+.++ |||.+.+--
T Consensus 342 ------~--~~v~vIadGGi~~~~di~kAla~---GA~~Vm~G~ 374 (495)
T PTZ00314 342 ------E--RGVPCIADGGIKNSGDICKALAL---GADCVMLGS 374 (495)
T ss_pred ------h--cCCeEEecCCCCCHHHHHHHHHc---CCCEEEECc
Confidence 1 1234443334 677888765554 688777643
No 259
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.09 E-value=96 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.2
Q ss_pred HHHHHhCCcEEEEEcCCCcHHHH
Q 012056 174 DSIQDRGINQVYIIGGDGTQKGA 196 (472)
Q Consensus 174 ~~l~~~~Id~LivIGGdgs~~~a 196 (472)
+.+++++.|++|+-||-|+-.-.
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHC
Confidence 44556789999999999987654
No 260
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=21.88 E-value=1.5e+02 Score=27.57 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHhCCcEEEEEcCCCcHHH---HHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHH
Q 012056 176 IQDRGINQVYIIGGDGTQKG---AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (472)
Q Consensus 176 l~~~~Id~LivIGGdgs~~~---a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~ 239 (472)
+...++|++++-||.++... ..++.+++.+++ +||.|| |.|++......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE-------------CHHHHHHHHHc
Confidence 34568999999999876433 223333333333 445554 78877655443
No 261
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.81 E-value=2.4e+02 Score=28.86 Aligned_cols=52 Identities=8% Similarity=0.167 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccccc
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (472)
++++.+..|. ...|.+|||||..|-.+ .+|++-+++.+.+.-.|-=|.=||-
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT-~rL~eia~~~~~~t~~Ie~~~el~~ 249 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNT-QKLVKICEKNCPNTFHIETADELDL 249 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccH-HHHHHHHHHHCCCEEEECChHHCCH
Confidence 5777788884 46999999999999875 5577777766654444555555543
No 262
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.78 E-value=3.4e+02 Score=25.57 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=47.7
Q ss_pred CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCCChH
Q 012056 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (472)
Q Consensus 91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (472)
..++.++ || .|+.++.. .+.+...|++.++.|. +||-. . +-....++.|...+-.+|-..-+.+..|
T Consensus 48 ~~~vfll--G~-~~~v~~~~---~~~l~~~yP~l~i~g~-~g~f~---~---~~~~~i~~~I~~s~~dil~VglG~PkQE 114 (177)
T TIGR00696 48 KLPIFLY--GG-KPDVLQQL---KVKLIKEYPKLKIVGA-FGPLE---P---EERKAALAKIARSGAGIVFVGLGCPKQE 114 (177)
T ss_pred CCeEEEE--CC-CHHHHHHH---HHHHHHHCCCCEEEEE-CCCCC---h---HHHHHHHHHHHHcCCCEEEEEcCCcHhH
Confidence 3566666 44 55544433 3344456888899887 66642 1 1122346677777766654444444455
Q ss_pred HHHHHH-HHhCCcEEEEEcC
Q 012056 171 KIVDSI-QDRGINQVYIIGG 189 (472)
Q Consensus 171 ~i~~~l-~~~~Id~LivIGG 189 (472)
..+... ..++...++-+||
T Consensus 115 ~~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 115 IWMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHHhHHhCCCcEEEEece
Confidence 555554 4444555566666
No 263
>PLN02801 beta-amylase
Probab=21.71 E-value=5.7e+02 Score=28.47 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhCCcEEEE------Ec--CCCc--HHHHHHHHHHHHHcCCCceee----------------ccccccc--
Q 012056 169 TSKIVDSIQDRGINQVYI------IG--GDGT--QKGAAVIYEEIRQRGLKVAVA----------------GIPKTID-- 220 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~Liv------IG--Gdgs--~~~a~~L~~~~~~~~~~i~vv----------------gIPkTID-- 220 (472)
++.-+..||..|+|++.+ += |.+- ..+-.+|++.+++.|+++++| -+|+-+-
T Consensus 39 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~~~ 118 (517)
T PLN02801 39 LEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQWVRDV 118 (517)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556677888999999864 22 3332 445577888888888876554 3677654
Q ss_pred ----cCccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCc--ceEEEEEecCCCcc
Q 012056 221 ----NDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESIE--NGIGVVKLMGRYCG 268 (472)
Q Consensus 221 ----NDi~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~~--~rv~iVEvMGr~~G 268 (472)
.||..||. |+|.| |+++...+...+.+++-...- .-|.=||+=.+-||
T Consensus 119 g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~~I~eI~VGlGP~G 189 (517)
T PLN02801 119 GDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEAGVIIDIEVGLGPAG 189 (517)
T ss_pred hccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEEcccccc
Confidence 38988884 77887 789999999988887765533 23555666444443
No 264
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.36 E-value=2.2e+02 Score=30.56 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecccccccc
Q 012056 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (472)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (472)
.+++..+..|...++|.+|||||--|-.+ .+|++-+++.+.+.-.|-=+.=|+-
T Consensus 275 ~~RQ~A~~~La~~~vD~miVVGG~nSSNT-~rL~eia~~~g~~ty~Ie~~~eL~~ 328 (387)
T PRK13371 275 QERQDAMFSLVEEPLDLMVVIGGYNSSNT-THLQEIAIERGIPSYHIDSPERILS 328 (387)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCCCccH-HHHHHHHHhcCCCEEEECCHHHcCC
Confidence 45788888887778999999999999765 5677777776655444544555554
No 265
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=21.18 E-value=6.8e+02 Score=24.65 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eccChhHHhhhhhcCCcccccccCC---CChHHHHHHHHHh
Q 012056 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRGG---HDTSKIVDSIQDR 179 (472)
Q Consensus 104 pGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~~---~~~~~i~~~l~~~ 179 (472)
|.-....+.+++.+.. .+..++.-+..- ..+ ...-..-...+...|+.+......+ .++...+..+++.
T Consensus 118 ~~~~~~~~~~~~~l~~-~g~~~v~~l~~~------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~ 190 (336)
T cd06326 118 ASYADEIAAIVRHLVT-LGLKRIAVFYQD------DAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA 190 (336)
T ss_pred CChHHHHHHHHHHHHH-hCCceEEEEEec------CcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc
Confidence 4444566677776653 344455444221 111 1111112334556677665554432 4677888888888
Q ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 180 ~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
+.|++|+.+-.. .+..+.+.+++.|++++++++
T Consensus 191 ~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 191 RPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred CCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEE
Confidence 899888876332 233455666777887766653
No 266
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.17 E-value=5.4e+02 Score=25.22 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=40.2
Q ss_pred hhcCCcccccccC---CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 153 HKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 153 ~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
...|++++.+... ..++...+..+++.+.|.+++.+..+.+ ..+.+.+.+.|+++++++
T Consensus 161 ~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~---~~~~~~~~~~g~~~~i~~ 222 (334)
T cd06347 161 KKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEV---GLIAKQARELGIKVPILG 222 (334)
T ss_pred HHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhH---HHHHHHHHHcCCCCcEEe
Confidence 3457777766443 3578888999999999998887655533 445566666777665554
No 267
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.15 E-value=1.4e+02 Score=24.41 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=27.4
Q ss_pred CCcccccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHH
Q 012056 156 GGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQK 194 (472)
Q Consensus 156 GGs~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~ 194 (472)
++-+|=+. . ...+.+.+.|+++++..+++|||.++..
T Consensus 50 ~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is 86 (92)
T PF04122_consen 50 NAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAIS 86 (92)
T ss_pred CCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccC
Confidence 34455555 2 2237888889999999999999999864
No 268
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.14 E-value=4.6e+02 Score=22.23 Aligned_cols=26 Identities=12% Similarity=0.428 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHhCC-cEEEEEcCCCcH
Q 012056 168 DTSKIVDSIQDRGI-NQVYIIGGDGTQ 193 (472)
Q Consensus 168 ~~~~i~~~l~~~~I-d~LivIGGdgs~ 193 (472)
...++++.+++.+- +..+++||...-
T Consensus 66 ~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 66 LMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 35566666777666 666777776543
No 269
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=21.11 E-value=2.3e+02 Score=27.52 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCC--cHHHHHHHHHHHHHcCCCceeeccccccccCccCcC
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDG--TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID 227 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdg--s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd 227 (472)
+.+++++.+.+.+-|+++ |||.. +......+.+.+++ ..++||+--|.+.+.=.++-|
T Consensus 12 ~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~i~~~aD 71 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNGLSRYAD 71 (205)
T ss_pred HHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccccCcCCC
Confidence 456778889999999875 56554 33444555566655 356788888988875555444
No 270
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.05 E-value=3.1e+02 Score=29.29 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=64.1
Q ss_pred eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEc------ccccccccCCeeccChhHHhhhhhcCCcccccc-c
Q 012056 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGID------GGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-R 164 (472)
Q Consensus 92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~------~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss-R 164 (472)
+||+|++ |-++| +-.-..+++.+..+|+..+.+|+- .|++-|++ .+.-.+-++.. .|+-= |
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~-----~~elsvmGf~E----VL~~lp~ 69 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFD-----MEELSVMGFVE----VLGRLPR 69 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccC-----HHHHHHhhHHH----HHHHHHH
Confidence 4677776 23333 224455667777778878999987 55554432 23323333321 12110 0
Q ss_pred CCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 165 GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 165 ~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
--.-+.++++++.+.+.|.|+.|= +..--..+++.+++.+.++++|.
T Consensus 70 llk~~~~~~~~i~~~kpD~~i~ID---sPdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 70 LLKIRRELVRYILANKPDVLILID---SPDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeC---CCCCchHHHHHHHHhCCCCCeEE
Confidence 012357888999999999999984 33333556677777786777764
No 271
>PRK15447 putative protease; Provisional
Probab=21.04 E-value=1.7e+02 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHhhccCCcceEecCCCCCC
Q 012056 270 IAMYATLGSRDVDCCLIPESPFY 292 (472)
Q Consensus 270 LA~~aaLA~~~ad~ilIPE~~~~ 292 (472)
.+.+++++..+||.||++|..|.
T Consensus 18 ~~~~~~~~~~gaDaVY~g~~~~~ 40 (301)
T PRK15447 18 RDFYQRAADSPVDIVYLGETVCS 40 (301)
T ss_pred HHHHHHHHcCCCCEEEECCccCC
Confidence 46778886668999999998743
No 272
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=20.95 E-value=1.5e+02 Score=22.96 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=26.8
Q ss_pred cChhHHhhhhhcCCcccccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHH
Q 012056 144 LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203 (472)
Q Consensus 144 L~~~~v~~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~ 203 (472)
++.+.|+.+.++| ++.+++++.|++.||+.+ ...+..+..++.+++
T Consensus 8 i~~~lVd~F~~mG----------F~~dkVvevlrrlgik~~----n~~dn~t~~~ilEEL 53 (55)
T PF09288_consen 8 IDKDLVDQFENMG----------FERDKVVEVLRRLGIKSM----NGVDNETENKILEEL 53 (55)
T ss_dssp -SHHHHHHHHHHT------------HHHHHHHHHHS--SS------SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHcC----------CcHHHHHHHHHHhCCCCC----CCccchhHHHHHHHH
Confidence 4556666666664 678999999999999854 113456677777765
No 273
>PRK02399 hypothetical protein; Provisional
Probab=20.93 E-value=1.2e+02 Score=32.53 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=46.4
Q ss_pred cEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccc--cCC------CChHHHHHHHHH-hCCcEEEEEcCCCcHH
Q 012056 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS--RGG------HDTSKIVDSIQD-RGINQVYIIGGDGTQK 194 (472)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss--R~~------~~~~~i~~~l~~-~~Id~LivIGGdgs~~ 194 (472)
.+++-+-=|..|=-. ...+++.+.|...+..+...+.+. |+. ....+++..|.+ .+|++++-+||.+.=.
T Consensus 31 ~~v~~iDv~~~~~p~-~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~L~~~g~i~gviglGGs~GT~ 109 (406)
T PRK02399 31 LEVVTVDVSGLGEPP-FEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAAFVRELYERGDVAGVIGLGGSGGTA 109 (406)
T ss_pred CceEEEecCCCCCCC-CCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCcchHH
Confidence 466656554433100 113667777766553333333332 332 123445554444 5599999999988643
Q ss_pred HHHHHHHHHHHcCCCceeecccccc
Q 012056 195 GAAVIYEEIRQRGLKVAVAGIPKTI 219 (472)
Q Consensus 195 ~a~~L~~~~~~~~~~i~vvgIPkTI 219 (472)
-+....+ .++ +|+||=|
T Consensus 110 lat~aMr-----~LP---iG~PKlm 126 (406)
T PRK02399 110 LATPAMR-----ALP---IGVPKLM 126 (406)
T ss_pred HHHHHHH-----hCC---CCCCeEE
Confidence 3333322 355 7899865
No 274
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=20.93 E-value=93 Score=29.64 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=22.9
Q ss_pred CcccccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHH
Q 012056 157 GTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195 (472)
Q Consensus 157 Gs~LGssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~ 195 (472)
|.-+-..|..+. -.+.++..+.|++|+-||-++-..
T Consensus 23 g~~v~v~~~~~~---~~~~~~~~~~d~iIlsgGP~~p~~ 58 (195)
T PRK07649 23 GQELVVKRNDEV---TISDIENMKPDFLMISPGPCSPNE 58 (195)
T ss_pred CCcEEEEeCCCC---CHHHHhhCCCCEEEECCCCCChHh
Confidence 444545554321 123345678999999999998654
No 275
>PRK04155 chaperone protein HchA; Provisional
Probab=20.90 E-value=9e+02 Score=24.64 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=26.1
Q ss_pred ChHHHHHHHH--HhCCcEEEEEcCCCcHHH------HHHHHHHHHHcCC
Q 012056 168 DTSKIVDSIQ--DRGINQVYIIGGDGTQKG------AAVIYEEIRQRGL 208 (472)
Q Consensus 168 ~~~~i~~~l~--~~~Id~LivIGGdgs~~~------a~~L~~~~~~~~~ 208 (472)
..+.+.+... ....|++|+-||-|.+.. ..+|.+++.+.+-
T Consensus 133 ~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K 181 (287)
T PRK04155 133 KLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDR 181 (287)
T ss_pred eHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCC
Confidence 3555555444 467899999999998654 3444455554443
No 276
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=20.86 E-value=9.3e+02 Score=24.81 Aligned_cols=104 Identities=20% Similarity=0.184 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc-ccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (472)
Q Consensus 168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i 246 (472)
...++++.+++..=+..++.|.-.|...|..+.+ .|.+.-++++ |.++...-.-+.....--|++..+.++++..
T Consensus 121 ~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~ 196 (325)
T cd00381 121 YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDY 196 (325)
T ss_pred HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhc
Confidence 3455666666654345566677777777766654 4666444433 5553211111111122224444444433211
Q ss_pred HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEec
Q 012056 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLI 286 (472)
Q Consensus 247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilI 286 (472)
.+-|| ..|+-.----...+|+. |||.+.+
T Consensus 197 ---------~vpVI-A~GGI~~~~di~kAla~-GA~~Vmi 225 (325)
T cd00381 197 ---------GVPVI-ADGGIRTSGDIVKALAA-GADAVML 225 (325)
T ss_pred ---------CCcEE-ecCCCCCHHHHHHHHHc-CCCEEEe
Confidence 23344 44544322233444555 7888887
No 277
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.74 E-value=7.3e+02 Score=23.56 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhCCcEEEEEcCC
Q 012056 169 TSKIVDSIQDRGINQVYIIGGD 190 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~LivIGGd 190 (472)
..+.++.|...++|++|+...+
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~ 65 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPID 65 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCC
Confidence 4567788889999999999765
No 278
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=20.72 E-value=45 Score=34.83 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCcHHHHH-HHHHHHHHcCCCceeecc
Q 012056 181 INQVYIIGGDGTQKGAA-VIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 181 Id~LivIGGdgs~~~a~-~L~~~~~~~~~~i~vvgI 215 (472)
.|++|-.||||||--|. ++.+ -..|||||
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~------~~~PViGv 135 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVID------DSKPVIGV 135 (395)
T ss_pred hhEEEEecCccceeehhhhhhc------cCCceeee
Confidence 37899999999986543 2433 24678886
No 279
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=20.59 E-value=1.3e+02 Score=30.68 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=23.5
Q ss_pred hcCcceEEEEEecCC-CcchHHHHHhhccCCcceEe
Q 012056 251 ESIENGIGVVKLMGR-YCGFIAMYATLGSRDVDCCL 285 (472)
Q Consensus 251 ~s~~~rv~iVEvMGr-~~G~LA~~aaLA~~~ad~il 285 (472)
..+.++|.+|=|||- |.||++|--.--. .+|.++
T Consensus 18 r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~-~~d~VV 52 (285)
T COG0414 18 RKEGKRVGLVPTMGNLHEGHLSLVRRAKK-ENDVVV 52 (285)
T ss_pred HHcCCEEEEEcCCcccchHHHHHHHHHhh-cCCeEE
Confidence 334578999999997 8899997654322 456443
No 280
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=20.46 E-value=1.9e+02 Score=27.53 Aligned_cols=53 Identities=13% Similarity=0.355 Sum_probs=36.9
Q ss_pred cCCcccccccCC-CChHHHHHHH-HHhCCcEEEEEcCCCc-HHHHHHHHHHHHHcCC
Q 012056 155 RGGTILGTSRGG-HDTSKIVDSI-QDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGL 208 (472)
Q Consensus 155 ~GGs~LGssR~~-~~~~~i~~~l-~~~~Id~LivIGGdgs-~~~a~~L~~~~~~~~~ 208 (472)
.|-.+.||+++. ..+++++.++ ..-+|..|++.|-+=. +.+.+.|. .+.++|+
T Consensus 40 ~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~-aLh~NGi 95 (176)
T PF04208_consen 40 AGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLL-ALHENGI 95 (176)
T ss_pred cCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHH-HHHHcCC
Confidence 455799999984 5799998887 5567999998887753 44444443 3445665
No 281
>PLN02905 beta-amylase
Probab=20.30 E-value=5.9e+02 Score=29.23 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhCCcEEEE------Ec--CCCc--HHHHHHHHHHHHHcCCCceee----------------ccccccc--
Q 012056 169 TSKIVDSIQDRGINQVYI------IG--GDGT--QKGAAVIYEEIRQRGLKVAVA----------------GIPKTID-- 220 (472)
Q Consensus 169 ~~~i~~~l~~~~Id~Liv------IG--Gdgs--~~~a~~L~~~~~~~~~~i~vv----------------gIPkTID-- 220 (472)
+..-+..||..|++++.+ += |.+- ..+-.+|++.+++.|+++++| -+|+-+-
T Consensus 288 l~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~ 367 (702)
T PLN02905 288 LLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEI 367 (702)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 455678899999999864 22 3332 455678888888888876664 3777653
Q ss_pred ----cCccCcCc---------ccCch--------hHHHHHHHHHHHHHHhhhcC--cceEEEEEecCCCcchH
Q 012056 221 ----NDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESI--ENGIGVVKLMGRYCGFI 270 (472)
Q Consensus 221 ----NDi~gtd~---------S~Gfd--------TA~~~~~~~i~~i~~~A~s~--~~rv~iVEvMGr~~G~L 270 (472)
.||..||. |+|.| |+++...+.....+++-... ..-|.=|++=.+-||-|
T Consensus 368 g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGEL 440 (702)
T PLN02905 368 GRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGEL 440 (702)
T ss_pred hhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccc
Confidence 48988885 88988 68899999888888775543 12366677655555543
No 282
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.23 E-value=2.8e+02 Score=30.05 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=57.9
Q ss_pred eEEEEccCCCCCchh-HHHHHHHHHHHHhcCCcEEEEEc-ccccccccCC-eeccChhHHhhhhh-------cCCc--cc
Q 012056 93 HACIVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGID-GGYRGFYSKN-TINLTPKVVNDIHK-------RGGT--IL 160 (472)
Q Consensus 93 ~iaIltsGG~apGmN-a~Ir~vv~~~~~~~~~~~v~Gi~-~G~~GL~~~~-~~~L~~~~v~~~~~-------~GGs--~L 160 (472)
-|+|+++ ..+++. .=|.++++.+...++...|+.+. .||.|-.... +......-++.+.. ..++ +|
T Consensus 128 ~I~V~st--C~~~lIGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNii 205 (457)
T TIGR01284 128 RMYTYAT--CTTALIGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLI 205 (457)
T ss_pred eEEEECC--ChHHhhccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEE
Confidence 4555554 555543 23556666555445434676665 7888832211 10000001111110 1122 45
Q ss_pred ccccCCCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHH
Q 012056 161 GTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVI 199 (472)
Q Consensus 161 GssR~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L 199 (472)
|......|.+++.+.|++.||+.+-++.|+.|+..-..+
T Consensus 206 G~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~ 244 (457)
T TIGR01284 206 GEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWM 244 (457)
T ss_pred ccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 544444578889999999999999888998887654433
No 283
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=20.21 E-value=7.2e+02 Score=23.26 Aligned_cols=60 Identities=28% Similarity=0.561 Sum_probs=36.7
Q ss_pred hhhcCCcccccccC---CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeec
Q 012056 152 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (472)
Q Consensus 152 ~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (472)
+...|..+...... ..+....+..|++.+.+.+++.+..+. +..+.+.+.+.++++++++
T Consensus 159 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---~~~~~~~~~~~g~~~~~~~ 221 (298)
T cd06268 159 LKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGD---AALFLKQAREAGLKVPIVG 221 (298)
T ss_pred HHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccch---HHHHHHHHHHcCCCCcEEe
Confidence 34455555444332 246778888888888898888765432 3345556666777666654
No 284
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.21 E-value=2.4e+02 Score=28.79 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=43.6
Q ss_pred hhhhcCCcccccccC---CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeecc
Q 012056 151 DIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (472)
Q Consensus 151 ~~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (472)
.|...|+.+.+..++ ..|+...+..++.-+-|.++++ +.++- +..+.+.+++.|++.+++++
T Consensus 171 ~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~~--~~~~~~~~~~~G~~~~~~~~ 235 (357)
T cd06337 171 ALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPPD--FATFWRQAAQAGFKPKIVTI 235 (357)
T ss_pred HHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCccH--HHHHHHHHHHCCCCCCeEEE
Confidence 344568888877765 3588999999999999997654 44443 34455667777887666643
Done!